Query 017143
Match_columns 376
No_of_seqs 132 out of 1558
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:59:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11579 putative oxidoreducta 100.0 5.3E-56 1.2E-60 414.6 38.1 331 5-363 3-345 (346)
2 COG0673 MviM Predicted dehydro 100.0 8.6E-55 1.9E-59 407.6 35.5 337 4-364 1-341 (342)
3 PRK10206 putative oxidoreducta 100.0 3.1E-51 6.8E-56 380.6 35.4 329 6-363 1-342 (344)
4 KOG2741 Dimeric dihydrodiol de 100.0 3.1E-47 6.7E-52 335.3 31.7 340 1-361 1-347 (351)
5 KOG2742 Predicted oxidoreducta 100.0 3.3E-35 7.2E-40 256.6 13.9 346 6-372 3-355 (367)
6 TIGR01761 thiaz-red thiazoliny 100.0 8E-29 1.7E-33 226.9 25.9 223 5-279 2-238 (343)
7 PF01408 GFO_IDH_MocA: Oxidore 100.0 8.9E-29 1.9E-33 195.8 12.6 120 7-135 1-120 (120)
8 PRK13302 putative L-aspartate 99.9 2.3E-23 5E-28 186.6 15.6 168 1-200 1-171 (271)
9 PRK08300 acetaldehyde dehydrog 99.8 2.1E-20 4.5E-25 166.8 13.3 142 4-160 2-154 (302)
10 PRK13303 L-aspartate dehydroge 99.8 2.1E-20 4.5E-25 167.3 12.4 227 6-278 1-233 (265)
11 TIGR03215 ac_ald_DH_ac acetald 99.8 4.1E-20 8.9E-25 164.7 13.5 140 6-160 1-148 (285)
12 TIGR03855 NAD_NadX aspartate d 99.8 1.9E-19 4.2E-24 156.0 14.4 122 32-168 1-123 (229)
13 PRK13304 L-aspartate dehydroge 99.8 2.4E-19 5.2E-24 160.5 14.5 146 6-168 1-147 (265)
14 TIGR01921 DAP-DH diaminopimela 99.8 6.4E-18 1.4E-22 152.3 17.7 189 5-215 2-194 (324)
15 PLN02819 lysine-ketoglutarate 99.8 1.1E-17 2.4E-22 171.4 18.4 153 5-170 568-740 (1042)
16 PRK06270 homoserine dehydrogen 99.8 6.4E-18 1.4E-22 156.7 14.6 150 6-162 2-179 (341)
17 PRK06349 homoserine dehydrogen 99.8 6.6E-18 1.4E-22 161.1 13.2 148 5-162 2-158 (426)
18 PRK00048 dihydrodipicolinate r 99.7 2.6E-17 5.6E-22 146.8 13.4 141 6-163 1-142 (257)
19 PRK05447 1-deoxy-D-xylulose 5- 99.7 6.8E-15 1.5E-19 135.1 19.4 208 7-248 2-256 (385)
20 TIGR00036 dapB dihydrodipicoli 99.7 1E-15 2.2E-20 137.0 12.4 132 7-150 2-138 (266)
21 PF08635 ox_reductase_C: Putat 99.4 6.8E-12 1.5E-16 94.9 10.1 130 138-270 1-140 (142)
22 PF02894 GFO_IDH_MocA_C: Oxido 99.3 1.3E-11 2.8E-16 96.1 8.8 101 147-254 1-104 (115)
23 PRK05472 redox-sensing transcr 99.2 8.2E-12 1.8E-16 108.4 5.3 103 5-115 83-186 (213)
24 COG1712 Predicted dinucleotide 99.1 8.1E-10 1.8E-14 92.6 12.2 142 7-164 1-142 (255)
25 PRK04207 glyceraldehyde-3-phos 99.1 7.3E-10 1.6E-14 102.8 11.0 95 6-109 1-111 (341)
26 PRK13301 putative L-aspartate 99.0 3.8E-09 8.1E-14 92.4 12.9 142 6-164 2-144 (267)
27 PRK08618 ornithine cyclodeamin 99.0 5.3E-10 1.2E-14 103.4 8.0 124 6-142 127-268 (325)
28 PRK07634 pyrroline-5-carboxyla 99.0 2.8E-08 6.1E-13 88.5 15.8 148 4-162 2-163 (245)
29 PRK08374 homoserine dehydrogen 98.9 1.3E-08 2.8E-13 94.2 12.4 148 6-163 2-174 (336)
30 PRK00436 argC N-acetyl-gamma-g 98.9 4.2E-09 9.1E-14 98.0 8.2 91 6-105 2-97 (343)
31 PF01113 DapB_N: Dihydrodipico 98.9 7.4E-09 1.6E-13 81.7 7.4 120 7-136 1-123 (124)
32 PF03807 F420_oxidored: NADP o 98.8 3.6E-08 7.9E-13 74.2 8.9 88 8-104 1-91 (96)
33 COG4693 PchG Oxidoreductase (N 98.8 8.3E-08 1.8E-12 82.9 11.5 163 7-205 5-172 (361)
34 TIGR01546 GAPDH-II_archae glyc 98.7 1.5E-07 3.3E-12 86.0 10.8 93 9-109 1-109 (333)
35 PF03447 NAD_binding_3: Homose 98.7 3E-08 6.4E-13 77.6 5.4 113 13-133 1-116 (117)
36 COG4091 Predicted homoserine d 98.6 2.4E-07 5.2E-12 82.7 10.1 145 4-161 15-183 (438)
37 COG1748 LYS9 Saccharopine dehy 98.6 5.1E-07 1.1E-11 84.0 12.7 150 6-168 1-155 (389)
38 PRK06476 pyrroline-5-carboxyla 98.6 8.1E-07 1.8E-11 79.7 13.5 134 8-161 2-149 (258)
39 PRK06046 alanine dehydrogenase 98.6 1.4E-07 3.1E-12 87.2 8.9 92 5-105 128-221 (326)
40 PF03446 NAD_binding_2: NAD bi 98.6 5.9E-07 1.3E-11 74.6 11.5 118 6-137 1-121 (163)
41 smart00859 Semialdhyde_dh Semi 98.6 2E-07 4.4E-12 73.4 6.9 90 8-104 1-96 (122)
42 COG0460 ThrA Homoserine dehydr 98.5 1.4E-06 3.1E-11 79.0 12.4 147 4-161 1-166 (333)
43 TIGR01850 argC N-acetyl-gamma- 98.5 3.3E-07 7.1E-12 85.5 8.2 90 7-105 1-97 (346)
44 PRK07679 pyrroline-5-carboxyla 98.5 6.1E-06 1.3E-10 74.9 15.3 146 6-161 3-162 (279)
45 PF10727 Rossmann-like: Rossma 98.5 4.5E-07 9.8E-12 71.2 6.7 100 5-115 9-111 (127)
46 TIGR02371 ala_DH_arch alanine 98.5 8.9E-07 1.9E-11 81.9 9.4 94 5-106 127-221 (325)
47 PF01118 Semialdhyde_dh: Semia 98.4 2.8E-07 6.2E-12 72.4 4.4 87 8-104 1-94 (121)
48 PRK06392 homoserine dehydrogen 98.4 1E-05 2.3E-10 74.4 14.6 147 7-163 1-168 (326)
49 PRK12490 6-phosphogluconate de 98.4 7.8E-06 1.7E-10 74.9 13.2 111 8-131 2-115 (299)
50 TIGR01532 E4PD_g-proteo D-eryt 98.4 2E-06 4.2E-11 78.9 9.0 101 8-112 1-126 (325)
51 COG2084 MmsB 3-hydroxyisobutyr 98.3 9.7E-06 2.1E-10 72.5 13.0 119 7-139 1-124 (286)
52 PRK11559 garR tartronate semia 98.3 1.1E-05 2.3E-10 74.0 13.5 110 7-133 3-119 (296)
53 PRK11880 pyrroline-5-carboxyla 98.3 5.2E-06 1.1E-10 74.9 11.2 100 6-115 2-101 (267)
54 PRK08291 ectoine utilization p 98.3 1.7E-06 3.7E-11 80.3 8.0 104 6-123 132-240 (330)
55 PF02629 CoA_binding: CoA bind 98.3 5.8E-07 1.3E-11 67.5 3.9 90 5-105 2-92 (96)
56 PRK07502 cyclohexadienyl dehyd 98.3 1.2E-05 2.5E-10 74.1 13.3 122 1-137 1-126 (307)
57 PF03435 Saccharop_dh: Sacchar 98.3 4.8E-06 1E-10 79.3 11.0 146 9-167 1-156 (386)
58 PLN02350 phosphogluconate dehy 98.3 1.4E-05 3E-10 77.4 14.2 119 1-131 1-128 (493)
59 COG0289 DapB Dihydrodipicolina 98.3 1.9E-05 4.1E-10 68.8 13.2 144 6-163 2-154 (266)
60 cd01065 NAD_bind_Shikimate_DH 98.3 4.4E-06 9.6E-11 68.7 9.0 121 6-141 19-145 (155)
61 PLN02696 1-deoxy-D-xylulose-5- 98.3 8.7E-05 1.9E-09 70.1 18.2 214 6-248 57-314 (454)
62 PRK07340 ornithine cyclodeamin 98.2 3.6E-06 7.9E-11 77.1 8.1 90 5-106 124-216 (304)
63 PRK07680 late competence prote 98.2 6.2E-05 1.3E-09 68.1 15.5 103 7-119 1-107 (273)
64 PRK12491 pyrroline-5-carboxyla 98.2 1.5E-05 3.2E-10 71.9 10.9 106 7-120 3-109 (272)
65 PRK15461 NADH-dependent gamma- 98.2 3.6E-05 7.7E-10 70.5 13.6 116 7-139 2-124 (296)
66 TIGR00872 gnd_rel 6-phosphoglu 98.2 2.8E-05 6.1E-10 71.2 12.8 110 7-131 1-114 (298)
67 PRK09599 6-phosphogluconate de 98.2 3.7E-05 8.1E-10 70.5 13.5 113 7-134 1-118 (301)
68 COG0345 ProC Pyrroline-5-carbo 98.2 0.00016 3.6E-09 64.1 16.4 146 6-162 1-158 (266)
69 KOG0409 Predicted dehydrogenas 98.2 2.5E-05 5.5E-10 69.0 11.0 114 6-135 35-155 (327)
70 COG3804 Uncharacterized conser 98.1 6.2E-05 1.3E-09 65.6 13.1 147 6-164 2-158 (350)
71 PRK06928 pyrroline-5-carboxyla 98.1 2.3E-05 4.9E-10 71.0 11.1 105 7-120 2-110 (277)
72 PRK06813 homoserine dehydrogen 98.1 5.8E-05 1.3E-09 69.9 13.5 149 6-163 2-174 (346)
73 TIGR02992 ectoine_eutC ectoine 98.1 1.2E-05 2.6E-10 74.6 8.7 89 6-105 129-222 (326)
74 COG1064 AdhP Zn-dependent alco 98.1 6.6E-05 1.4E-09 68.7 13.1 143 7-158 168-333 (339)
75 PRK06141 ornithine cyclodeamin 98.1 1.4E-05 3.1E-10 73.6 8.8 109 5-126 124-235 (314)
76 PLN02700 homoserine dehydrogen 98.1 0.0002 4.3E-09 66.8 16.2 149 4-163 1-192 (377)
77 KOG0455 Homoserine dehydrogena 98.1 0.00021 4.6E-09 61.3 14.4 151 4-163 1-174 (364)
78 PF01210 NAD_Gly3P_dh_N: NAD-d 98.0 3.8E-05 8.2E-10 63.3 9.7 89 8-105 1-101 (157)
79 COG4569 MhpF Acetaldehyde dehy 98.0 2.6E-05 5.7E-10 64.6 8.4 101 5-111 3-106 (310)
80 TIGR01505 tartro_sem_red 2-hyd 98.0 9.9E-05 2.1E-09 67.4 12.4 109 8-133 1-116 (291)
81 PRK09466 metL bifunctional asp 98.0 0.00038 8.3E-09 71.8 17.3 153 4-163 456-628 (810)
82 PLN02775 Probable dihydrodipic 98.0 0.00014 3E-09 64.9 12.1 131 5-150 10-147 (286)
83 PF03721 UDPG_MGDP_dh_N: UDP-g 98.0 5.2E-05 1.1E-09 64.1 9.1 124 7-139 1-153 (185)
84 PLN02256 arogenate dehydrogena 97.9 5.7E-05 1.2E-09 69.1 9.8 79 4-94 34-112 (304)
85 PRK09436 thrA bifunctional asp 97.9 0.0003 6.6E-09 73.0 16.2 154 5-163 464-634 (819)
86 cd05213 NAD_bind_Glutamyl_tRNA 97.9 4.5E-05 9.7E-10 70.3 9.1 97 5-109 177-274 (311)
87 PRK14618 NAD(P)H-dependent gly 97.9 9E-05 1.9E-09 69.0 11.2 109 6-123 4-121 (328)
88 COG2344 AT-rich DNA-binding pr 97.9 1.6E-05 3.5E-10 65.1 5.2 102 4-113 82-184 (211)
89 PTZ00142 6-phosphogluconate de 97.9 0.0002 4.3E-09 69.4 13.7 109 7-126 2-118 (470)
90 COG0743 Dxr 1-deoxy-D-xylulose 97.9 0.00095 2.1E-08 60.8 16.8 215 6-249 1-255 (385)
91 PLN02688 pyrroline-5-carboxyla 97.9 0.00014 3.1E-09 65.4 11.6 78 7-92 1-79 (266)
92 PRK06823 ornithine cyclodeamin 97.9 6.9E-05 1.5E-09 68.8 9.5 94 5-106 127-221 (315)
93 PRK15059 tartronate semialdehy 97.9 0.00019 4.2E-09 65.4 12.4 109 8-134 2-117 (292)
94 TIGR00243 Dxr 1-deoxy-D-xylulo 97.9 0.0025 5.4E-08 59.2 18.6 212 7-248 2-259 (389)
95 PRK07589 ornithine cyclodeamin 97.8 9.5E-05 2.1E-09 68.6 9.5 95 5-108 128-226 (346)
96 PRK06407 ornithine cyclodeamin 97.8 7.1E-05 1.5E-09 68.4 8.4 95 5-106 116-211 (301)
97 PF01488 Shikimate_DH: Shikima 97.8 3.6E-05 7.7E-10 61.7 5.7 92 5-107 11-108 (135)
98 PF02423 OCD_Mu_crystall: Orni 97.8 3.9E-05 8.5E-10 70.6 6.5 98 5-108 127-225 (313)
99 PLN02358 glyceraldehyde-3-phos 97.8 0.0001 2.2E-09 67.9 8.9 101 5-109 4-129 (338)
100 TIGR01692 HIBADH 3-hydroxyisob 97.8 0.00031 6.8E-09 64.0 12.0 108 11-133 1-113 (288)
101 TIGR00978 asd_EA aspartate-sem 97.8 4.6E-05 1E-09 71.1 6.1 146 7-161 1-170 (341)
102 PRK05479 ketol-acid reductoiso 97.7 0.00018 4E-09 66.0 9.3 74 6-91 17-90 (330)
103 PLN02858 fructose-bisphosphate 97.7 0.00043 9.4E-09 75.4 13.5 136 1-157 319-481 (1378)
104 TIGR03026 NDP-sugDHase nucleot 97.7 0.00032 6.9E-09 67.4 11.1 71 7-87 1-89 (411)
105 TIGR00873 gnd 6-phosphoglucona 97.7 0.00063 1.4E-08 66.0 13.1 111 8-130 1-118 (467)
106 TIGR01019 sucCoAalpha succinyl 97.7 0.0004 8.7E-09 62.6 10.9 121 5-141 5-128 (286)
107 TIGR00871 zwf glucose-6-phosph 97.7 0.0003 6.6E-09 67.9 10.6 119 6-124 2-163 (482)
108 PRK06199 ornithine cyclodeamin 97.7 0.00018 3.8E-09 67.9 8.7 96 5-105 154-257 (379)
109 PRK08507 prephenate dehydrogen 97.7 0.00065 1.4E-08 61.5 12.1 99 7-118 1-99 (275)
110 COG2423 Predicted ornithine cy 97.7 0.00026 5.7E-09 64.9 9.2 111 7-128 131-243 (330)
111 PTZ00187 succinyl-CoA syntheta 97.7 0.00068 1.5E-08 61.7 11.7 126 5-142 28-155 (317)
112 PRK08655 prephenate dehydrogen 97.7 0.00074 1.6E-08 65.2 12.7 114 7-134 1-115 (437)
113 PRK07417 arogenate dehydrogena 97.6 0.00028 6.1E-09 64.0 9.0 79 7-96 1-79 (279)
114 PRK05678 succinyl-CoA syntheta 97.6 0.00057 1.2E-08 61.8 10.8 120 4-141 6-130 (291)
115 PRK11064 wecC UDP-N-acetyl-D-m 97.6 0.001 2.2E-08 63.9 13.1 71 6-85 3-86 (415)
116 COG0677 WecC UDP-N-acetyl-D-ma 97.6 0.00066 1.4E-08 62.6 11.0 106 6-122 9-145 (436)
117 PLN02712 arogenate dehydrogena 97.6 0.00024 5.1E-09 71.9 9.0 77 5-93 368-444 (667)
118 PLN02712 arogenate dehydrogena 97.6 0.00071 1.5E-08 68.5 12.4 77 5-93 51-127 (667)
119 TIGR00465 ilvC ketol-acid redu 97.6 0.00032 6.9E-09 64.4 9.0 76 6-93 3-78 (314)
120 PRK05722 glucose-6-phosphate 1 97.6 0.00064 1.4E-08 65.9 11.4 122 3-124 6-172 (495)
121 PRK08293 3-hydroxybutyryl-CoA 97.6 0.0011 2.5E-08 60.3 11.9 104 6-115 3-127 (287)
122 PLN00125 Succinyl-CoA ligase [ 97.5 0.00097 2.1E-08 60.4 11.0 84 5-102 11-95 (300)
123 PRK06130 3-hydroxybutyryl-CoA 97.5 0.0012 2.5E-08 61.1 11.8 104 6-115 4-122 (311)
124 PF07991 IlvN: Acetohydroxy ac 97.5 0.00031 6.8E-09 56.9 6.9 133 6-163 4-140 (165)
125 PRK13403 ketol-acid reductoiso 97.5 0.0006 1.3E-08 61.9 9.4 73 6-91 16-88 (335)
126 PRK00094 gpsA NAD(P)H-dependen 97.5 0.00056 1.2E-08 63.5 9.5 71 7-86 2-83 (325)
127 PRK12464 1-deoxy-D-xylulose 5- 97.5 0.0098 2.1E-07 55.3 17.1 208 11-248 1-251 (383)
128 TIGR02130 dapB_plant dihydrodi 97.5 0.0028 6E-08 56.4 13.0 130 7-151 1-137 (275)
129 PRK11863 N-acetyl-gamma-glutam 97.5 0.00038 8.2E-09 63.5 7.7 126 5-158 1-137 (313)
130 COG1004 Ugd Predicted UDP-gluc 97.5 0.0032 7E-08 58.3 13.6 110 7-123 1-137 (414)
131 TIGR01915 npdG NADPH-dependent 97.5 0.00077 1.7E-08 58.8 9.3 96 7-111 1-106 (219)
132 COG0002 ArgC Acetylglutamate s 97.5 0.00049 1.1E-08 62.6 8.0 91 5-104 1-98 (349)
133 PRK15182 Vi polysaccharide bio 97.5 0.0014 3E-08 63.0 11.6 103 4-121 4-136 (425)
134 PF02670 DXP_reductoisom: 1-de 97.4 0.0013 2.9E-08 51.5 9.3 92 9-105 1-119 (129)
135 PRK06129 3-hydroxyacyl-CoA deh 97.4 0.0016 3.5E-08 59.9 11.5 111 7-128 3-134 (308)
136 PLN02858 fructose-bisphosphate 97.4 0.0023 5E-08 69.9 14.2 107 6-126 4-115 (1378)
137 COG2085 Predicted dinucleotide 97.4 0.0012 2.7E-08 55.8 9.6 81 6-95 1-81 (211)
138 smart00846 Gp_dh_N Glyceraldeh 97.4 0.0017 3.7E-08 52.8 10.1 36 7-44 1-37 (149)
139 COG0057 GapA Glyceraldehyde-3- 97.4 0.00094 2E-08 60.3 9.0 102 6-111 1-126 (335)
140 PRK09260 3-hydroxybutyryl-CoA 97.4 0.0048 1E-07 56.3 13.7 76 7-88 2-95 (288)
141 PRK06545 prephenate dehydrogen 97.4 0.0023 4.9E-08 60.3 11.8 117 8-135 2-119 (359)
142 PRK07531 bifunctional 3-hydrox 97.4 0.0037 7.9E-08 61.5 13.6 74 7-87 5-93 (495)
143 PF13380 CoA_binding_2: CoA bi 97.4 0.00048 1E-08 53.5 5.9 101 8-132 2-106 (116)
144 PRK05671 aspartate-semialdehyd 97.4 0.00043 9.4E-09 64.1 6.5 88 5-104 3-94 (336)
145 PRK08040 putative semialdehyde 97.3 0.00036 7.7E-09 64.5 5.8 140 4-158 2-153 (336)
146 COG0373 HemA Glutamyl-tRNA red 97.3 0.0015 3.2E-08 61.6 9.6 91 6-106 178-272 (414)
147 PRK08664 aspartate-semialdehyd 97.3 0.00087 1.9E-08 62.8 8.1 91 5-105 2-105 (349)
148 PRK05808 3-hydroxybutyryl-CoA 97.3 0.0058 1.3E-07 55.5 13.1 81 6-93 3-103 (282)
149 PRK15057 UDP-glucose 6-dehydro 97.3 0.0032 6.9E-08 59.8 11.4 72 7-85 1-84 (388)
150 PLN02353 probable UDP-glucose 97.3 0.0074 1.6E-07 58.7 14.0 75 6-84 1-88 (473)
151 PF00044 Gp_dh_N: Glyceraldehy 97.2 0.0011 2.3E-08 53.9 6.9 100 7-111 1-124 (151)
152 PLN03139 formate dehydrogenase 97.2 0.0011 2.5E-08 62.4 8.1 70 6-87 199-268 (386)
153 COG0074 SucD Succinyl-CoA synt 97.2 0.0018 4E-08 56.9 8.5 117 5-137 7-124 (293)
154 TIGR01851 argC_other N-acetyl- 97.2 0.0017 3.7E-08 58.9 8.5 125 7-158 2-136 (310)
155 COG0240 GpsA Glycerol-3-phosph 97.2 0.0072 1.6E-07 55.0 12.3 108 6-123 1-123 (329)
156 PF02826 2-Hacid_dh_C: D-isome 97.2 0.0011 2.3E-08 55.9 6.4 67 6-85 36-102 (178)
157 cd01075 NAD_bind_Leu_Phe_Val_D 97.2 0.0057 1.2E-07 52.4 11.0 108 6-133 28-137 (200)
158 PTZ00431 pyrroline carboxylate 97.2 0.0015 3.3E-08 58.5 7.8 98 6-119 3-101 (260)
159 KOG2380 Prephenate dehydrogena 97.1 0.0017 3.7E-08 58.4 7.5 67 5-83 51-117 (480)
160 COG1023 Gnd Predicted 6-phosph 97.1 0.0091 2E-07 51.3 11.5 110 7-153 1-112 (300)
161 TIGR02717 AcCoA-syn-alpha acet 97.1 0.0047 1E-07 59.8 11.0 109 5-132 6-125 (447)
162 PRK07530 3-hydroxybutyryl-CoA 97.1 0.0046 9.9E-08 56.5 10.3 75 6-87 4-96 (292)
163 PRK07574 formate dehydrogenase 97.1 0.0021 4.6E-08 60.6 8.1 69 7-87 193-261 (385)
164 PRK06035 3-hydroxyacyl-CoA deh 97.1 0.0067 1.4E-07 55.4 11.2 74 7-87 4-98 (291)
165 PRK12549 shikimate 5-dehydroge 97.1 0.0017 3.6E-08 59.0 7.1 123 7-147 128-262 (284)
166 COG1063 Tdh Threonine dehydrog 97.0 0.0084 1.8E-07 56.3 11.8 139 8-158 171-317 (350)
167 PRK13940 glutamyl-tRNA reducta 97.0 0.0017 3.6E-08 62.0 7.1 72 6-85 181-253 (414)
168 PRK07066 3-hydroxybutyryl-CoA 97.0 0.0048 1E-07 56.8 9.5 78 7-90 8-99 (321)
169 PRK00258 aroE shikimate 5-dehy 97.0 0.0019 4.1E-08 58.6 6.8 127 6-147 123-256 (278)
170 COG0059 IlvC Ketol-acid reduct 97.0 0.0036 7.8E-08 55.7 8.1 76 7-94 19-94 (338)
171 COG0136 Asd Aspartate-semialde 97.0 0.0084 1.8E-07 54.6 10.5 149 6-164 1-160 (334)
172 TIGR02853 spore_dpaA dipicolin 97.0 0.004 8.6E-08 56.6 8.5 116 7-143 152-272 (287)
173 PRK08306 dipicolinate synthase 96.9 0.0041 8.9E-08 56.8 8.6 115 6-141 152-271 (296)
174 PRK07819 3-hydroxybutyryl-CoA 96.9 0.0056 1.2E-07 55.7 9.4 79 7-92 6-102 (286)
175 PRK00045 hemA glutamyl-tRNA re 96.9 0.002 4.4E-08 62.0 6.7 82 6-95 182-266 (423)
176 cd05211 NAD_bind_Glu_Leu_Phe_V 96.9 0.0083 1.8E-07 52.1 9.9 111 5-133 22-148 (217)
177 PRK12439 NAD(P)H-dependent gly 96.9 0.0061 1.3E-07 57.0 9.6 101 1-111 1-116 (341)
178 PLN02968 Probable N-acetyl-gam 96.9 0.0026 5.6E-08 60.1 6.6 139 5-156 37-204 (381)
179 PLN02545 3-hydroxybutyryl-CoA 96.8 0.014 3.1E-07 53.4 11.2 74 7-88 5-97 (295)
180 PRK14620 NAD(P)H-dependent gly 96.8 0.0051 1.1E-07 57.2 8.3 80 7-94 1-91 (326)
181 PRK14619 NAD(P)H-dependent gly 96.8 0.0054 1.2E-07 56.5 8.3 63 6-93 4-66 (308)
182 PRK06522 2-dehydropantoate 2-r 96.8 0.007 1.5E-07 55.5 9.1 77 7-94 1-86 (304)
183 TIGR01035 hemA glutamyl-tRNA r 96.8 0.003 6.4E-08 60.7 6.8 83 6-96 180-265 (417)
184 PRK08818 prephenate dehydrogen 96.8 0.0043 9.4E-08 58.1 7.6 68 6-95 4-72 (370)
185 KOG0024 Sorbitol dehydrogenase 96.8 0.024 5.3E-07 51.1 11.5 146 7-163 171-324 (354)
186 PLN02383 aspartate semialdehyd 96.7 0.003 6.5E-08 58.8 5.9 140 5-158 6-160 (344)
187 COG0111 SerA Phosphoglycerate 96.7 0.0046 9.9E-08 57.0 7.0 111 7-156 143-253 (324)
188 PRK09880 L-idonate 5-dehydroge 96.7 0.044 9.6E-07 51.2 13.9 134 7-156 171-309 (343)
189 PRK14806 bifunctional cyclohex 96.7 0.023 4.9E-07 59.0 12.9 106 7-122 4-110 (735)
190 PRK13243 glyoxylate reductase; 96.7 0.0057 1.2E-07 56.9 7.5 67 6-86 150-216 (333)
191 PRK06728 aspartate-semialdehyd 96.7 0.0035 7.5E-08 58.1 5.9 140 1-160 1-155 (347)
192 TIGR03376 glycerol3P_DH glycer 96.7 0.011 2.3E-07 55.1 9.2 99 8-111 1-121 (342)
193 PRK04148 hypothetical protein; 96.7 0.013 2.8E-07 46.3 8.2 94 6-113 17-114 (134)
194 PLN00203 glutamyl-tRNA reducta 96.6 0.0044 9.5E-08 60.8 6.7 82 6-95 266-353 (519)
195 PRK08605 D-lactate dehydrogena 96.6 0.011 2.3E-07 55.0 9.0 69 6-88 146-214 (332)
196 PRK12921 2-dehydropantoate 2-r 96.6 0.011 2.3E-07 54.4 8.8 77 7-94 1-88 (305)
197 COG0287 TyrA Prephenate dehydr 96.6 0.038 8.2E-07 49.8 11.9 125 6-142 3-128 (279)
198 PRK12480 D-lactate dehydrogena 96.6 0.0094 2E-07 55.3 8.3 65 7-87 147-211 (330)
199 KOG0023 Alcohol dehydrogenase, 96.6 0.024 5.1E-07 51.1 10.3 134 7-153 183-344 (360)
200 PLN02272 glyceraldehyde-3-phos 96.6 0.011 2.4E-07 55.8 8.7 100 6-109 85-208 (421)
201 cd01487 E1_ThiF_like E1_ThiF_l 96.6 0.017 3.6E-07 48.4 8.9 33 8-43 1-33 (174)
202 TIGR01809 Shik-DH-AROM shikima 96.6 0.013 2.9E-07 53.1 8.9 134 6-149 125-268 (282)
203 PF02737 3HCDH_N: 3-hydroxyacy 96.5 0.0082 1.8E-07 50.6 6.9 101 8-115 1-121 (180)
204 PF02056 Glyco_hydro_4: Family 96.5 0.012 2.6E-07 49.3 7.6 76 8-85 1-84 (183)
205 TIGR03025 EPS_sugtrans exopoly 96.5 0.015 3.2E-07 56.6 9.4 90 6-105 125-220 (445)
206 PRK14874 aspartate-semialdehyd 96.5 0.0063 1.4E-07 56.6 6.4 137 6-157 1-149 (334)
207 PRK08955 glyceraldehyde-3-phos 96.5 0.018 3.9E-07 53.2 9.1 98 6-108 2-121 (334)
208 PRK06436 glycerate dehydrogena 96.4 0.0094 2E-07 54.5 7.1 64 6-86 122-185 (303)
209 PRK15438 erythronate-4-phospha 96.4 0.01 2.2E-07 55.9 7.4 62 6-84 116-177 (378)
210 PRK08268 3-hydroxy-acyl-CoA de 96.4 0.07 1.5E-06 52.6 13.6 140 6-159 7-182 (507)
211 PRK12550 shikimate 5-dehydroge 96.4 0.014 3.1E-07 52.4 8.1 119 8-148 124-252 (272)
212 cd05297 GH4_alpha_glucosidase_ 96.4 0.034 7.4E-07 53.5 11.1 83 7-92 1-92 (423)
213 PTZ00082 L-lactate dehydrogena 96.4 0.013 2.9E-07 54.1 8.0 76 1-83 1-83 (321)
214 KOG0172 Lysine-ketoglutarate r 96.4 0.023 4.9E-07 52.4 9.1 152 6-171 2-161 (445)
215 PRK05225 ketol-acid reductoiso 96.4 0.008 1.7E-07 57.0 6.4 75 6-92 36-115 (487)
216 COG1052 LdhA Lactate dehydroge 96.4 0.011 2.3E-07 54.6 7.0 66 6-85 146-211 (324)
217 PRK14106 murD UDP-N-acetylmura 96.4 0.029 6.4E-07 54.6 10.5 92 5-105 4-97 (450)
218 PRK06598 aspartate-semialdehyd 96.3 0.034 7.3E-07 52.0 10.3 139 7-160 2-158 (369)
219 COG0362 Gnd 6-phosphogluconate 96.3 0.07 1.5E-06 49.5 11.8 109 5-123 2-117 (473)
220 TIGR00507 aroE shikimate 5-deh 96.3 0.038 8.2E-07 49.8 10.4 124 7-149 118-251 (270)
221 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.3 0.1 2.2E-06 51.4 13.7 102 7-115 6-127 (503)
222 COG1486 CelF Alpha-galactosida 96.2 0.016 3.5E-07 54.8 7.6 80 4-86 1-89 (442)
223 PTZ00345 glycerol-3-phosphate 96.2 0.02 4.4E-07 53.7 8.1 104 5-111 10-134 (365)
224 PRK08410 2-hydroxyacid dehydro 96.2 0.012 2.6E-07 54.2 6.5 63 6-85 145-207 (311)
225 COG0569 TrkA K+ transport syst 96.2 0.023 5.1E-07 49.6 8.0 93 7-107 1-99 (225)
226 PTZ00023 glyceraldehyde-3-phos 96.2 0.024 5.2E-07 52.3 8.3 100 7-110 3-125 (337)
227 PLN02928 oxidoreductase family 96.2 0.014 3E-07 54.6 6.9 72 7-85 160-237 (347)
228 PRK13397 3-deoxy-7-phosphohept 96.2 0.067 1.5E-06 47.1 10.6 88 44-135 66-157 (250)
229 PRK09310 aroDE bifunctional 3- 96.2 0.045 9.8E-07 53.5 10.6 119 6-146 332-450 (477)
230 PRK15409 bifunctional glyoxyla 96.1 0.018 4E-07 53.2 7.4 66 6-85 145-211 (323)
231 TIGR02356 adenyl_thiF thiazole 96.1 0.042 9.2E-07 47.2 9.1 36 5-43 20-55 (202)
232 TIGR01202 bchC 2-desacetyl-2-h 96.1 0.12 2.7E-06 47.4 12.9 125 8-156 147-275 (308)
233 PRK07729 glyceraldehyde-3-phos 96.1 0.037 8E-07 51.1 9.1 98 6-108 2-122 (343)
234 PRK00257 erythronate-4-phospha 96.1 0.018 3.9E-07 54.3 7.3 62 6-84 116-177 (381)
235 PLN02306 hydroxypyruvate reduc 96.1 0.022 4.7E-07 53.9 7.8 71 6-84 165-246 (386)
236 PRK12475 thiamine/molybdopteri 96.1 0.034 7.4E-07 51.8 8.8 35 6-43 24-58 (338)
237 cd01076 NAD_bind_1_Glu_DH NAD( 96.0 0.079 1.7E-06 46.4 10.5 115 4-134 29-158 (227)
238 PRK08229 2-dehydropantoate 2-r 96.0 0.035 7.6E-07 51.9 8.9 76 6-93 2-92 (341)
239 TIGR03023 WcaJ_sugtrans Undeca 96.0 0.025 5.5E-07 55.0 8.2 90 6-105 128-223 (451)
240 PRK05476 S-adenosyl-L-homocyst 96.0 0.045 9.7E-07 52.3 9.5 65 7-84 213-277 (425)
241 TIGR01361 DAHP_synth_Bsub phos 96.0 0.092 2E-06 46.9 10.8 88 43-134 75-166 (260)
242 PRK11790 D-3-phosphoglycerate 96.0 0.018 4E-07 55.1 6.8 64 6-85 151-214 (409)
243 TIGR01470 cysG_Nterm siroheme 96.0 0.066 1.4E-06 46.1 9.6 129 7-152 10-142 (205)
244 KOG0069 Glyoxylate/hydroxypyru 95.9 0.027 5.9E-07 51.6 7.3 69 6-87 162-230 (336)
245 PRK03369 murD UDP-N-acetylmura 95.9 0.047 1E-06 53.7 9.5 89 7-107 13-101 (488)
246 PRK06988 putative formyltransf 95.9 0.028 6.1E-07 51.7 7.5 76 6-84 2-87 (312)
247 cd05293 LDH_1 A subgroup of L- 95.9 0.038 8.2E-07 50.9 8.2 73 6-83 3-80 (312)
248 PRK14027 quinate/shikimate deh 95.9 0.031 6.8E-07 50.6 7.6 122 7-146 128-263 (283)
249 TIGR03450 mycothiol_INO1 inosi 95.9 0.1 2.2E-06 47.6 10.5 144 7-156 1-206 (351)
250 PRK08644 thiamine biosynthesis 95.9 0.06 1.3E-06 46.6 8.9 36 5-43 27-62 (212)
251 PLN03096 glyceraldehyde-3-phos 95.9 0.04 8.7E-07 51.8 8.3 101 6-109 60-184 (395)
252 PRK06932 glycerate dehydrogena 95.9 0.025 5.5E-07 52.1 7.0 62 6-85 147-208 (314)
253 PRK15469 ghrA bifunctional gly 95.9 0.02 4.4E-07 52.6 6.3 67 6-87 136-203 (312)
254 TIGR01327 PGDH D-3-phosphoglyc 95.8 0.029 6.3E-07 55.6 7.5 66 7-85 139-204 (525)
255 cd00401 AdoHcyase S-adenosyl-L 95.8 0.06 1.3E-06 51.3 9.3 77 7-96 203-280 (413)
256 PRK07403 glyceraldehyde-3-phos 95.8 0.056 1.2E-06 49.8 8.8 100 6-108 1-123 (337)
257 PRK10124 putative UDP-glucose 95.8 0.1 2.2E-06 50.9 11.1 88 6-106 143-236 (463)
258 cd05311 NAD_bind_2_malic_enz N 95.8 0.084 1.8E-06 46.2 9.5 115 6-134 25-150 (226)
259 PRK13581 D-3-phosphoglycerate 95.7 0.028 6.1E-07 55.7 7.1 66 6-85 140-205 (526)
260 PRK15425 gapA glyceraldehyde-3 95.7 0.094 2E-06 48.3 9.9 100 6-110 2-124 (331)
261 PRK15076 alpha-galactosidase; 95.7 0.027 6E-07 54.2 6.7 115 7-126 2-137 (431)
262 KOG2653 6-phosphogluconate deh 95.7 0.16 3.4E-06 46.4 10.8 115 1-123 1-120 (487)
263 PRK13535 erythrose 4-phosphate 95.6 0.083 1.8E-06 48.9 9.3 104 6-110 1-126 (336)
264 PRK06718 precorrin-2 dehydroge 95.6 0.047 1E-06 46.8 7.4 130 6-152 10-142 (202)
265 PRK11199 tyrA bifunctional cho 95.6 0.096 2.1E-06 49.6 10.1 104 6-141 98-202 (374)
266 PF02844 GARS_N: Phosphoribosy 95.6 0.0069 1.5E-07 45.2 1.9 90 7-104 1-90 (100)
267 PF00056 Ldh_1_N: lactate/mala 95.5 0.029 6.2E-07 45.2 5.1 74 7-84 1-79 (141)
268 PRK00066 ldh L-lactate dehydro 95.5 0.044 9.5E-07 50.5 7.0 79 1-84 1-83 (315)
269 COG1648 CysG Siroheme synthase 95.5 0.087 1.9E-06 45.4 8.3 131 6-152 12-145 (210)
270 PRK12595 bifunctional 3-deoxy- 95.5 0.15 3.2E-06 47.9 10.4 81 44-128 169-253 (360)
271 TIGR01296 asd_B aspartate-semi 95.5 0.022 4.8E-07 53.1 5.0 136 8-158 1-148 (339)
272 cd05292 LDH_2 A subgroup of L- 95.5 0.061 1.3E-06 49.5 7.9 74 7-85 1-78 (308)
273 PRK00683 murD UDP-N-acetylmura 95.5 0.082 1.8E-06 51.0 9.1 87 6-106 3-89 (418)
274 PTZ00075 Adenosylhomocysteinas 95.4 0.083 1.8E-06 51.0 8.8 65 6-83 254-318 (476)
275 PRK08223 hypothetical protein; 95.4 0.15 3.2E-06 46.0 10.0 37 5-44 26-62 (287)
276 TIGR03022 WbaP_sugtrans Undeca 95.4 0.067 1.5E-06 52.2 8.5 91 6-105 125-221 (456)
277 PRK12749 quinate/shikimate deh 95.4 0.048 1.1E-06 49.5 7.0 78 7-87 125-209 (288)
278 PRK10309 galactitol-1-phosphat 95.4 0.3 6.5E-06 45.6 12.6 136 7-156 162-312 (347)
279 PLN02602 lactate dehydrogenase 95.4 0.051 1.1E-06 50.8 7.2 72 7-83 38-114 (350)
280 cd05197 GH4_glycoside_hydrolas 95.4 0.064 1.4E-06 51.5 8.0 77 7-86 1-86 (425)
281 cd00757 ThiF_MoeB_HesA_family 95.4 0.11 2.3E-06 45.6 8.9 37 5-44 20-56 (228)
282 cd05291 HicDH_like L-2-hydroxy 95.4 0.048 1E-06 50.2 6.9 69 8-84 2-78 (306)
283 PRK06249 2-dehydropantoate 2-r 95.4 0.097 2.1E-06 48.3 9.0 80 1-90 1-88 (313)
284 COG1062 AdhC Zn-dependent alco 95.4 0.096 2.1E-06 47.8 8.4 96 7-111 187-290 (366)
285 PRK00141 murD UDP-N-acetylmura 95.3 0.093 2E-06 51.4 9.2 86 7-106 16-104 (473)
286 PRK13398 3-deoxy-7-phosphohept 95.3 0.44 9.5E-06 42.7 12.6 101 46-150 80-189 (266)
287 COG0771 MurD UDP-N-acetylmuram 95.3 0.068 1.5E-06 51.3 7.9 93 5-106 6-99 (448)
288 PRK08762 molybdopterin biosynt 95.3 0.097 2.1E-06 49.6 8.9 34 6-42 135-168 (376)
289 PLN02586 probable cinnamyl alc 95.3 0.31 6.6E-06 46.0 12.3 132 7-156 185-322 (360)
290 TIGR01362 KDO8P_synth 3-deoxy- 95.3 0.16 3.4E-06 44.6 9.3 87 43-133 59-149 (258)
291 TIGR00936 ahcY adenosylhomocys 95.3 0.13 2.8E-06 49.0 9.5 78 6-96 195-273 (406)
292 PRK06487 glycerate dehydrogena 95.2 0.056 1.2E-06 49.9 7.0 60 7-85 149-208 (317)
293 PRK12853 glucose-6-phosphate 1 95.2 0.26 5.6E-06 47.9 11.6 122 3-124 5-162 (482)
294 TIGR01763 MalateDH_bact malate 95.2 0.089 1.9E-06 48.3 8.1 71 7-84 2-79 (305)
295 PRK00005 fmt methionyl-tRNA fo 95.2 0.065 1.4E-06 49.3 7.1 76 7-85 1-89 (309)
296 PRK05198 2-dehydro-3-deoxyphos 95.1 0.2 4.2E-06 44.2 9.5 87 43-133 67-157 (264)
297 COG0364 Zwf Glucose-6-phosphat 95.1 0.32 7E-06 46.5 11.6 120 5-124 6-162 (483)
298 PRK07688 thiamine/molybdopteri 95.1 0.12 2.5E-06 48.3 8.6 36 5-43 23-58 (339)
299 PRK12548 shikimate 5-dehydroge 95.1 0.097 2.1E-06 47.7 8.0 76 7-87 127-212 (289)
300 PRK13396 3-deoxy-7-phosphohept 95.1 0.24 5.3E-06 46.0 10.5 80 45-128 153-236 (352)
301 PRK05600 thiamine biosynthesis 95.1 0.16 3.5E-06 47.9 9.5 36 5-43 40-75 (370)
302 COG1832 Predicted CoA-binding 95.1 0.4 8.7E-06 37.7 10.0 100 7-123 17-119 (140)
303 PRK02472 murD UDP-N-acetylmura 95.0 0.12 2.7E-06 50.2 9.0 92 7-106 6-98 (447)
304 PRK08328 hypothetical protein; 95.0 0.18 4E-06 44.2 9.1 36 6-44 27-62 (231)
305 PTZ00117 malate dehydrogenase; 95.0 0.1 2.2E-06 48.2 7.9 71 5-82 4-81 (319)
306 cd08298 CAD2 Cinnamyl alcohol 95.0 0.63 1.4E-05 43.0 13.3 88 7-106 169-256 (329)
307 PRK01438 murD UDP-N-acetylmura 94.9 0.12 2.5E-06 50.9 8.6 90 6-105 16-107 (480)
308 PLN02285 methionyl-tRNA formyl 94.9 0.069 1.5E-06 49.6 6.6 81 4-84 4-103 (334)
309 cd08237 ribitol-5-phosphate_DH 94.9 0.65 1.4E-05 43.3 13.3 126 7-153 165-297 (341)
310 cd08281 liver_ADH_like1 Zinc-d 94.9 0.39 8.5E-06 45.4 11.9 138 7-156 193-339 (371)
311 PRK09287 6-phosphogluconate de 94.9 0.4 8.7E-06 46.6 11.9 102 17-130 1-109 (459)
312 cd01483 E1_enzyme_family Super 94.9 0.27 5.9E-06 39.5 9.2 33 8-43 1-33 (143)
313 PTZ00434 cytosolic glyceraldeh 94.9 0.11 2.5E-06 48.0 7.6 105 5-110 2-139 (361)
314 PRK00421 murC UDP-N-acetylmura 94.9 0.16 3.4E-06 49.7 9.2 90 5-107 6-97 (461)
315 PLN02237 glyceraldehyde-3-phos 94.8 0.19 4E-06 47.9 9.2 101 5-108 74-198 (442)
316 PLN02539 glucose-6-phosphate 1 94.8 0.34 7.3E-06 47.1 11.1 121 4-124 15-182 (491)
317 cd01078 NAD_bind_H4MPT_DH NADP 94.8 0.14 3.1E-06 43.5 7.9 73 6-87 28-110 (194)
318 cd05298 GH4_GlvA_pagL_like Gly 94.8 0.12 2.6E-06 49.9 8.0 91 7-101 1-102 (437)
319 PRK09414 glutamate dehydrogena 94.8 0.43 9.3E-06 45.9 11.7 107 5-120 231-356 (445)
320 COG0223 Fmt Methionyl-tRNA for 94.8 0.1 2.2E-06 47.4 7.1 74 6-84 1-89 (307)
321 TIGR02822 adh_fam_2 zinc-bindi 94.8 0.88 1.9E-05 42.2 13.7 133 7-156 167-299 (329)
322 PRK11873 arsM arsenite S-adeno 94.8 0.88 1.9E-05 41.0 13.3 98 6-107 78-184 (272)
323 TIGR02354 thiF_fam2 thiamine b 94.8 0.14 3.1E-06 43.8 7.7 35 5-42 20-54 (200)
324 COG0169 AroE Shikimate 5-dehyd 94.8 0.12 2.7E-06 46.6 7.5 76 7-88 127-204 (283)
325 PLN02494 adenosylhomocysteinas 94.8 0.21 4.5E-06 48.2 9.4 77 7-96 255-332 (477)
326 PF00899 ThiF: ThiF family; I 94.8 0.18 3.8E-06 40.2 7.8 35 6-43 2-36 (135)
327 PF05368 NmrA: NmrA-like famil 94.7 0.23 4.9E-06 43.5 9.2 71 9-85 1-75 (233)
328 PRK06223 malate dehydrogenase; 94.7 0.14 3.1E-06 47.0 8.2 72 6-83 2-79 (307)
329 cd08239 THR_DH_like L-threonin 94.7 1 2.3E-05 41.8 14.0 134 7-156 165-306 (339)
330 cd01492 Aos1_SUMO Ubiquitin ac 94.6 0.36 7.7E-06 41.3 9.8 35 6-43 21-55 (197)
331 PLN02827 Alcohol dehydrogenase 94.6 0.48 1E-05 45.0 11.7 138 7-156 195-343 (378)
332 PRK14982 acyl-ACP reductase; P 94.6 0.14 3E-06 47.5 7.7 109 6-133 155-264 (340)
333 TIGR00518 alaDH alanine dehydr 94.6 0.11 2.5E-06 49.0 7.3 70 5-83 166-239 (370)
334 PRK03659 glutathione-regulated 94.6 0.1 2.2E-06 52.8 7.2 127 6-151 400-532 (601)
335 TIGR03451 mycoS_dep_FDH mycoth 94.6 0.64 1.4E-05 43.7 12.3 138 7-156 178-325 (358)
336 PRK12457 2-dehydro-3-deoxyphos 94.6 0.32 6.9E-06 43.2 9.3 77 44-124 74-154 (281)
337 PRK05597 molybdopterin biosynt 94.5 0.2 4.4E-06 47.0 8.7 36 5-43 27-62 (355)
338 PRK08673 3-deoxy-7-phosphohept 94.5 0.67 1.5E-05 42.9 11.8 89 43-135 143-235 (335)
339 COG1810 Uncharacterized protei 94.5 0.76 1.7E-05 39.2 11.1 133 6-159 1-137 (224)
340 PLN03033 2-dehydro-3-deoxyphos 94.5 0.24 5.2E-06 44.0 8.4 88 43-134 73-164 (290)
341 cd05296 GH4_P_beta_glucosidase 94.5 0.17 3.6E-06 48.6 8.2 78 7-86 1-87 (419)
342 PRK05562 precorrin-2 dehydroge 94.5 0.21 4.6E-06 43.3 8.0 129 6-151 25-157 (223)
343 TIGR01724 hmd_rel H2-forming N 94.5 0.72 1.6E-05 42.1 11.5 82 31-122 42-129 (341)
344 PRK09424 pntA NAD(P) transhydr 94.4 0.26 5.6E-06 48.4 9.4 43 6-52 165-207 (509)
345 cd08230 glucose_DH Glucose deh 94.4 0.97 2.1E-05 42.4 13.2 135 7-154 174-317 (355)
346 PRK09496 trkA potassium transp 94.4 0.15 3.2E-06 49.7 7.9 76 7-90 1-81 (453)
347 PRK01710 murD UDP-N-acetylmura 94.4 0.24 5.1E-06 48.4 9.2 91 7-106 15-107 (458)
348 PF13727 CoA_binding_3: CoA-bi 94.4 0.075 1.6E-06 44.1 5.0 91 7-104 78-172 (175)
349 PLN02178 cinnamyl-alcohol dehy 94.3 1.7 3.7E-05 41.2 14.7 132 7-156 180-317 (375)
350 TIGR00460 fmt methionyl-tRNA f 94.2 0.15 3.3E-06 47.0 7.1 76 7-85 1-89 (313)
351 TIGR00112 proC pyrroline-5-car 94.2 0.99 2.1E-05 40.0 12.1 118 33-162 10-141 (245)
352 COG1086 Predicted nucleoside-d 94.2 0.23 4.9E-06 48.5 8.3 89 5-104 115-208 (588)
353 TIGR02355 moeB molybdopterin s 94.2 0.28 6.1E-06 43.3 8.5 36 6-44 24-59 (240)
354 PRK10669 putative cation:proto 94.2 0.28 6.1E-06 49.2 9.5 122 7-151 418-545 (558)
355 PF00670 AdoHcyase_NAD: S-aden 94.2 0.23 4.9E-06 40.7 7.1 83 7-106 24-108 (162)
356 cd00755 YgdL_like Family of ac 94.2 0.38 8.1E-06 42.2 9.1 140 5-161 10-178 (231)
357 PRK03562 glutathione-regulated 94.2 0.26 5.7E-06 49.9 9.2 127 6-151 400-532 (621)
358 TIGR01087 murD UDP-N-acetylmur 94.1 0.22 4.7E-06 48.3 8.3 90 8-107 1-93 (433)
359 COG2910 Putative NADH-flavin r 94.0 0.17 3.6E-06 42.1 6.1 68 7-83 1-71 (211)
360 PLN02514 cinnamyl-alcohol dehy 94.0 2.1 4.5E-05 40.3 14.5 134 7-158 182-321 (357)
361 PRK15116 sulfur acceptor prote 94.0 0.33 7.1E-06 43.5 8.5 131 5-152 29-187 (268)
362 cd01491 Ube1_repeat1 Ubiquitin 94.0 0.25 5.5E-06 44.6 7.8 115 5-136 18-138 (286)
363 PRK14573 bifunctional D-alanyl 93.9 0.3 6.6E-06 51.3 9.4 90 6-108 4-95 (809)
364 PF00208 ELFV_dehydrog: Glutam 93.9 1.5 3.3E-05 38.7 12.4 137 5-151 31-186 (244)
365 PTZ00353 glycosomal glyceralde 93.9 0.36 7.9E-06 44.7 8.7 100 7-109 3-126 (342)
366 PRK06719 precorrin-2 dehydroge 93.8 0.17 3.6E-06 41.6 5.9 128 6-152 13-142 (157)
367 PRK09496 trkA potassium transp 93.8 0.42 9E-06 46.5 9.7 73 6-86 231-309 (453)
368 TIGR03013 EpsB_2 sugar transfe 93.8 0.28 6.1E-06 47.6 8.4 87 7-105 125-218 (442)
369 PLN02520 bifunctional 3-dehydr 93.8 0.28 6E-06 48.7 8.4 127 7-148 380-511 (529)
370 TIGR03570 NeuD_NnaD sugar O-ac 93.7 0.23 5E-06 42.2 6.9 79 8-96 1-81 (201)
371 PRK01368 murD UDP-N-acetylmura 93.7 0.38 8.2E-06 46.9 9.1 94 1-107 1-94 (454)
372 PF02254 TrkA_N: TrkA-N domain 93.7 0.43 9.3E-06 36.6 7.7 100 9-120 1-106 (116)
373 TIGR01745 asd_gamma aspartate- 93.6 0.29 6.2E-06 45.8 7.6 146 7-164 1-161 (366)
374 PRK01390 murD UDP-N-acetylmura 93.6 0.46 1E-05 46.4 9.5 86 7-106 10-99 (460)
375 COG3268 Uncharacterized conser 93.6 0.39 8.5E-06 43.7 8.0 148 1-163 1-163 (382)
376 TIGR03201 dearomat_had 6-hydro 93.5 2.3 5E-05 39.7 13.9 131 7-156 168-316 (349)
377 cd05313 NAD_bind_2_Glu_DH NAD( 93.5 2.2 4.7E-05 37.9 12.6 110 5-120 37-166 (254)
378 PRK04690 murD UDP-N-acetylmura 93.4 0.37 8E-06 47.2 8.5 90 7-107 9-100 (468)
379 PRK14852 hypothetical protein; 93.4 0.6 1.3E-05 49.1 10.1 97 5-108 331-457 (989)
380 cd00650 LDH_MDH_like NAD-depen 93.3 0.25 5.3E-06 44.4 6.7 71 9-83 1-79 (263)
381 PRK12854 glucose-6-phosphate 1 93.3 1.1 2.5E-05 43.5 11.3 120 5-124 10-170 (484)
382 PF13241 NAD_binding_7: Putati 93.3 0.44 9.6E-06 35.9 7.0 84 5-105 6-90 (103)
383 PRK04308 murD UDP-N-acetylmura 93.2 0.57 1.2E-05 45.6 9.4 95 1-107 1-98 (445)
384 PRK04663 murD UDP-N-acetylmura 93.2 0.48 1E-05 46.0 8.9 89 7-107 8-99 (438)
385 PRK06395 phosphoribosylamine-- 93.2 0.25 5.4E-06 47.8 6.8 90 6-106 2-95 (435)
386 TIGR03569 NeuB_NnaB N-acetylne 93.0 0.86 1.9E-05 42.1 9.8 78 46-126 78-158 (329)
387 KOG1255 Succinyl-CoA synthetas 93.0 0.73 1.6E-05 39.7 8.4 123 6-142 38-162 (329)
388 PRK03806 murD UDP-N-acetylmura 93.0 0.61 1.3E-05 45.2 9.3 89 6-107 6-96 (438)
389 PRK14851 hypothetical protein; 93.0 0.63 1.4E-05 47.5 9.6 96 6-108 43-168 (679)
390 COG4566 TtrR Response regulato 93.0 0.46 1E-05 39.6 7.0 77 33-111 4-109 (202)
391 TIGR03366 HpnZ_proposed putati 93.0 0.53 1.2E-05 42.5 8.4 90 7-105 122-217 (280)
392 PF00185 OTCace: Aspartate/orn 93.0 0.54 1.2E-05 38.6 7.6 75 6-85 2-84 (158)
393 cd08238 sorbose_phosphate_red 92.9 2.7 5.9E-05 40.3 13.6 94 8-104 178-286 (410)
394 TIGR03586 PseI pseudaminic aci 92.9 1.4 3E-05 40.8 10.8 78 48-128 81-161 (327)
395 PRK02705 murD UDP-N-acetylmura 92.8 0.65 1.4E-05 45.3 9.3 88 8-106 2-98 (459)
396 PRK06153 hypothetical protein; 92.8 0.89 1.9E-05 42.7 9.5 35 6-43 176-210 (393)
397 COG0151 PurD Phosphoribosylami 92.8 0.86 1.9E-05 43.0 9.3 142 7-161 1-143 (428)
398 PRK03803 murD UDP-N-acetylmura 92.7 0.54 1.2E-05 45.7 8.5 91 7-106 7-98 (448)
399 PTZ00309 glucose-6-phosphate 1 92.6 0.97 2.1E-05 44.5 9.9 118 6-123 54-217 (542)
400 PRK06091 membrane protein FdrA 92.6 0.5 1.1E-05 46.4 7.9 71 62-137 104-175 (555)
401 cd01485 E1-1_like Ubiquitin ac 92.6 0.44 9.6E-06 40.7 6.8 35 6-43 19-53 (198)
402 KOG2666 UDP-glucose/GDP-mannos 92.6 1.4 3E-05 39.9 9.8 141 6-151 1-170 (481)
403 PRK00107 gidB 16S rRNA methylt 92.6 1.7 3.6E-05 36.8 10.2 73 6-82 46-120 (187)
404 cd05290 LDH_3 A subgroup of L- 92.5 0.28 6E-06 45.1 5.8 71 8-83 1-77 (307)
405 KOG2711 Glycerol-3-phosphate d 92.5 0.67 1.4E-05 42.3 7.9 106 4-112 19-145 (372)
406 PRK08287 cobalt-precorrin-6Y C 92.5 2.8 6.1E-05 35.3 11.6 71 7-82 33-105 (187)
407 PRK12557 H(2)-dependent methyl 92.4 2.8 6.1E-05 39.1 12.4 84 31-123 42-131 (342)
408 PLN02740 Alcohol dehydrogenase 92.4 1.1 2.4E-05 42.6 10.0 137 7-156 200-348 (381)
409 TIGR01759 MalateDH-SF1 malate 92.4 0.53 1.2E-05 43.5 7.6 75 5-84 2-89 (323)
410 PRK14031 glutamate dehydrogena 92.3 1.8 4E-05 41.6 11.2 106 6-120 228-355 (444)
411 cd01484 E1-2_like Ubiquitin ac 92.2 1.3 2.8E-05 38.9 9.4 34 8-44 1-34 (234)
412 KOG0022 Alcohol dehydrogenase, 92.1 1.1 2.4E-05 40.6 8.7 96 7-109 194-297 (375)
413 TIGR03693 ocin_ThiF_like putat 92.1 1.5 3.4E-05 43.5 10.6 99 6-109 129-240 (637)
414 cd08296 CAD_like Cinnamyl alco 92.1 4.2 9.1E-05 37.6 13.4 88 8-105 166-258 (333)
415 PRK14967 putative methyltransf 92.1 7.5 0.00016 33.8 14.7 72 7-83 38-110 (223)
416 PRK05086 malate dehydrogenase; 92.1 0.31 6.6E-06 44.9 5.5 75 7-84 1-79 (312)
417 PLN02477 glutamate dehydrogena 92.0 1.6 3.5E-05 41.7 10.4 103 5-120 205-323 (410)
418 PF13460 NAD_binding_10: NADH( 92.0 0.28 6.1E-06 41.0 4.9 65 9-85 1-71 (183)
419 PRK15204 undecaprenyl-phosphat 92.0 2.7 5.7E-05 41.3 12.2 83 7-101 147-235 (476)
420 PRK05442 malate dehydrogenase; 92.0 0.4 8.6E-06 44.4 6.2 75 5-83 3-89 (326)
421 TIGR01757 Malate-DH_plant mala 91.9 0.65 1.4E-05 43.9 7.6 77 4-83 42-129 (387)
422 PLN02333 glucose-6-phosphate 1 91.9 1.7 3.8E-05 43.2 10.7 119 6-124 117-278 (604)
423 cd08285 NADP_ADH NADP(H)-depen 91.9 4.2 9.2E-05 37.9 13.2 90 7-105 168-265 (351)
424 PRK05708 2-dehydropantoate 2-r 91.8 0.3 6.4E-06 44.9 5.2 35 6-44 2-36 (305)
425 PLN03154 putative allyl alcoho 91.8 6.1 0.00013 36.9 14.2 89 7-105 160-257 (348)
426 KOG0068 D-3-phosphoglycerate d 91.7 0.54 1.2E-05 42.8 6.5 62 8-83 148-209 (406)
427 cd01339 LDH-like_MDH L-lactate 91.7 0.74 1.6E-05 42.2 7.7 68 9-83 1-75 (300)
428 PRK06444 prephenate dehydrogen 91.7 0.33 7.1E-06 41.4 4.9 27 7-36 1-28 (197)
429 cd08300 alcohol_DH_class_III c 91.6 3 6.6E-05 39.3 12.0 91 7-106 188-288 (368)
430 PTZ00079 NADP-specific glutama 91.6 2.5 5.4E-05 40.8 11.1 109 6-120 237-365 (454)
431 COG2242 CobL Precorrin-6B meth 91.5 7.3 0.00016 32.7 12.5 105 8-123 37-148 (187)
432 cd01486 Apg7 Apg7 is an E1-lik 91.5 1.1 2.3E-05 40.7 8.2 33 8-43 1-33 (307)
433 PRK07411 hypothetical protein; 91.5 1.2 2.7E-05 42.4 9.1 36 6-44 38-73 (390)
434 PTZ00325 malate dehydrogenase; 91.4 0.52 1.1E-05 43.5 6.3 77 3-84 5-86 (321)
435 PRK00885 phosphoribosylamine-- 91.4 0.54 1.2E-05 45.3 6.7 88 7-105 1-91 (420)
436 PRK06027 purU formyltetrahydro 91.4 0.77 1.7E-05 41.7 7.3 75 5-85 88-176 (286)
437 PRK12825 fabG 3-ketoacyl-(acyl 91.4 0.8 1.7E-05 40.1 7.4 43 1-46 1-44 (249)
438 PLN02640 glucose-6-phosphate 1 91.3 2.7 5.9E-05 41.6 11.3 120 5-124 87-249 (573)
439 cd08277 liver_alcohol_DH_like 91.3 4.5 9.8E-05 38.0 12.8 135 7-155 186-332 (365)
440 PF10100 DUF2338: Uncharacteri 91.3 2.4 5.1E-05 39.9 10.2 134 7-152 2-191 (429)
441 cd01490 Ube1_repeat2 Ubiquitin 91.2 1.2 2.6E-05 42.8 8.6 34 8-44 1-39 (435)
442 cd01489 Uba2_SUMO Ubiquitin ac 91.2 1.4 3E-05 40.5 8.7 34 8-44 1-34 (312)
443 TIGR02964 xanthine_xdhC xanthi 91.0 0.76 1.7E-05 40.7 6.8 83 5-96 99-184 (246)
444 cd01336 MDH_cytoplasmic_cytoso 91.0 0.44 9.6E-06 44.1 5.5 75 5-84 1-88 (325)
445 TIGR00138 gidB 16S rRNA methyl 91.0 4.6 0.0001 33.9 11.2 109 6-123 43-157 (181)
446 PRK05690 molybdopterin biosynt 90.9 2 4.3E-05 38.1 9.3 36 6-44 32-67 (245)
447 TIGR01082 murC UDP-N-acetylmur 90.9 1.2 2.7E-05 43.3 8.7 86 8-106 1-88 (448)
448 cd01338 MDH_choloroplast_like 90.9 0.35 7.5E-06 44.8 4.6 76 5-84 1-88 (322)
449 cd08233 butanediol_DH_like (2R 90.9 5.2 0.00011 37.3 12.8 131 7-155 174-315 (351)
450 TIGR01534 GAPDH-I glyceraldehy 90.8 1.3 2.9E-05 40.9 8.3 98 8-108 1-123 (327)
451 cd08246 crotonyl_coA_red croto 90.7 15 0.00032 35.0 15.8 89 7-106 195-315 (393)
452 cd08301 alcohol_DH_plants Plan 90.7 5.3 0.00011 37.6 12.7 131 7-155 189-336 (369)
453 TIGR00561 pntA NAD(P) transhyd 90.7 1.9 4.1E-05 42.4 9.6 42 6-51 164-205 (511)
454 COG0039 Mdh Malate/lactate deh 90.7 0.45 9.7E-06 43.5 5.0 71 7-82 1-77 (313)
455 cd01337 MDH_glyoxysomal_mitoch 90.5 0.57 1.2E-05 43.0 5.7 73 7-84 1-78 (310)
456 PRK13011 formyltetrahydrofolat 90.5 0.78 1.7E-05 41.6 6.4 75 5-85 88-176 (286)
457 PRK00377 cbiT cobalt-precorrin 90.5 2.4 5.2E-05 36.1 9.2 73 7-82 42-119 (198)
458 COG0773 MurC UDP-N-acetylmuram 90.4 1.2 2.5E-05 42.8 7.7 98 8-126 9-107 (459)
459 PRK13789 phosphoribosylamine-- 90.4 0.96 2.1E-05 43.7 7.4 145 5-163 3-150 (426)
460 PRK07877 hypothetical protein; 90.2 1.4 2.9E-05 45.4 8.5 95 6-108 107-229 (722)
461 PRK02006 murD UDP-N-acetylmura 90.1 2 4.4E-05 42.4 9.6 91 7-106 8-103 (498)
462 KOG1502 Flavonol reductase/cin 90.0 2.6 5.6E-05 38.8 9.3 78 1-84 1-89 (327)
463 TIGR00877 purD phosphoribosyla 90.0 0.98 2.1E-05 43.6 7.2 89 7-104 1-92 (423)
464 cd05279 Zn_ADH1 Liver alcohol 90.0 9.1 0.0002 36.0 13.6 133 7-156 185-333 (365)
465 TIGR02818 adh_III_F_hyde S-(hy 89.9 7.1 0.00015 36.8 12.8 91 7-106 187-287 (368)
466 TIGR00091 tRNA (guanine-N(7)-) 89.9 5.2 0.00011 34.0 10.8 76 6-85 17-98 (194)
467 PRK04284 ornithine carbamoyltr 89.9 1.5 3.3E-05 40.6 8.0 76 5-85 154-235 (332)
468 TIGR02437 FadB fatty oxidation 89.8 5.5 0.00012 41.3 12.6 142 7-161 314-490 (714)
469 PLN02522 ATP citrate (pro-S)-l 89.8 2 4.2E-05 43.1 9.0 125 6-142 10-145 (608)
470 TIGR00639 PurN phosphoribosylg 89.7 2 4.4E-05 36.4 8.0 74 8-85 2-90 (190)
471 PRK05647 purN phosphoribosylgl 89.7 1.2 2.5E-05 38.2 6.5 75 7-84 2-90 (200)
472 TIGR02469 CbiT precorrin-6Y C5 89.6 3.9 8.4E-05 31.3 9.1 74 7-84 21-98 (124)
473 PRK11154 fadJ multifunctional 89.6 5.4 0.00012 41.3 12.5 112 7-128 310-441 (708)
474 KOG4354 N-acetyl-gamma-glutamy 89.5 0.29 6.2E-06 42.3 2.6 92 5-106 18-117 (340)
475 COG0604 Qor NADPH:quinone redu 89.5 14 0.00031 34.2 14.1 140 7-160 144-297 (326)
476 cd05284 arabinose_DH_like D-ar 89.5 13 0.00027 34.4 14.0 134 7-156 169-309 (340)
477 PLN00106 malate dehydrogenase 89.4 0.75 1.6E-05 42.5 5.5 74 6-84 18-96 (323)
478 PF12847 Methyltransf_18: Meth 89.4 1.9 4.1E-05 32.5 7.1 72 7-82 3-78 (112)
479 TIGR01142 purT phosphoribosylg 89.3 1.6 3.4E-05 41.4 7.9 86 8-104 1-89 (380)
480 cd05294 LDH-like_MDH_nadp A la 89.2 0.73 1.6E-05 42.4 5.3 70 7-83 1-81 (309)
481 TIGR02440 FadJ fatty oxidation 89.2 6.9 0.00015 40.4 12.8 113 7-129 305-437 (699)
482 PRK08125 bifunctional UDP-gluc 89.1 1 2.3E-05 46.1 6.9 75 7-84 1-85 (660)
483 PRK00994 F420-dependent methyl 89.1 4.9 0.00011 34.8 9.5 67 6-85 2-71 (277)
484 TIGR01081 mpl UDP-N-acetylmura 89.0 2.3 4.9E-05 41.4 8.9 90 8-106 1-90 (448)
485 cd08255 2-desacetyl-2-hydroxye 88.9 3.9 8.5E-05 36.5 9.9 90 7-105 99-189 (277)
486 PRK10637 cysG siroheme synthas 88.9 1.9 4.1E-05 42.1 8.2 87 6-104 12-101 (457)
487 COG5495 Uncharacterized conser 88.8 3.2 6.9E-05 35.9 8.3 93 6-111 10-102 (289)
488 PRK11730 fadB multifunctional 88.8 6.7 0.00014 40.7 12.5 112 7-129 314-445 (715)
489 cd00300 LDH_like L-lactate deh 88.8 1.4 3E-05 40.4 6.8 68 9-84 1-76 (300)
490 TIGR00658 orni_carb_tr ornithi 88.8 2.2 4.7E-05 39.2 8.0 73 5-82 147-224 (304)
491 PF00479 G6PD_N: Glucose-6-pho 88.7 0.73 1.6E-05 38.8 4.5 48 76-123 107-160 (183)
492 PRK07236 hypothetical protein; 88.5 0.6 1.3E-05 44.4 4.5 40 1-44 1-40 (386)
493 PRK09288 purT phosphoribosylgl 88.5 2.7 5.9E-05 40.0 9.0 87 5-103 11-101 (395)
494 PLN02427 UDP-apiose/xylose syn 88.5 1.7 3.8E-05 41.2 7.6 37 5-44 13-50 (386)
495 TIGR02441 fa_ox_alpha_mit fatt 88.5 21 0.00046 37.1 15.8 74 7-87 336-427 (737)
496 PF04321 RmlD_sub_bind: RmlD s 88.3 0.68 1.5E-05 42.1 4.4 59 7-83 1-60 (286)
497 PRK12815 carB carbamoyl phosph 88.3 0.66 1.4E-05 50.2 5.0 80 1-85 1-93 (1068)
498 cd08242 MDR_like Medium chain 88.2 3.6 7.8E-05 37.7 9.4 87 7-105 157-243 (319)
499 PRK02102 ornithine carbamoyltr 88.0 2.5 5.4E-05 39.2 7.9 74 5-83 154-233 (331)
500 PLN02948 phosphoribosylaminoim 88.0 2.9 6.3E-05 42.1 9.0 90 3-103 19-109 (577)
No 1
>PRK11579 putative oxidoreductase; Provisional
Probab=100.00 E-value=5.3e-56 Score=414.62 Aligned_cols=331 Identities=18% Similarity=0.232 Sum_probs=256.5
Q ss_pred CceeEEEEeCChhhH-HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 5 DTVKYGIIGMGMMGR-EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
+++||||||+|.+|+ .|++.+... +++++++|||+++++ +. ++++. ++.|+|+++||+++++|+|+||||
T Consensus 3 ~~irvgiiG~G~i~~~~~~~~~~~~--~~~~l~av~d~~~~~---~~---~~~~~-~~~~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 3 DKIRVGLIGYGYASKTFHAPLIAGT--PGLELAAVSSSDATK---VK---ADWPT-VTVVSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred CcceEEEECCCHHHHHHHHHHHhhC--CCCEEEEEECCCHHH---HH---hhCCC-CceeCCHHHHhcCCCCCEEEEcCC
Confidence 369999999999998 588988887 899999999998763 32 34543 268999999999999999999999
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~ 163 (376)
+..|++++++||+ +|||||||||++.|.+|+++|.++| +++|+.+++++++||+|.++++|++|++|.||+|+.++.
T Consensus 74 ~~~H~~~~~~al~--aGkhVl~EKPla~t~~ea~~l~~~a-~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~i~~~~~ 150 (346)
T PRK11579 74 NDTHFPLAKAALE--AGKHVVVDKPFTVTLSQARELDALA-KSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGEVAYFES 150 (346)
T ss_pred cHHHHHHHHHHHH--CCCeEEEeCCCCCCHHHHHHHHHHH-HHhCCEEEEEeeccCCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 9999999999999 9999999999999999999999999 556999999999999999999999999999999999988
Q ss_pred eeccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEec
Q 017143 164 REHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFE 243 (376)
Q Consensus 164 ~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~ 243 (376)
++.++.. ..+..|+.+...+||+++|+|+|.+|+++||+| .|.+|++....... ..+++|.+.++++|+
T Consensus 151 ~~~~~~~-~~~~~w~~~~~~ggG~l~d~g~H~id~~~~l~G-~~~~v~a~~~~~~~---------~~~~~D~~~~~l~f~ 219 (346)
T PRK11579 151 HFDRFRP-QVRQRWREQGGPGSGIWYDLAPHLLDQAIQLFG-LPVSITVDLAQLRP---------GAQSTDYFHAILSYP 219 (346)
T ss_pred EecccCC-CCccccccCCCCCCcchhhhhhhHHHHHHHHhC-CCeEEEEEeeeecC---------CCCCCceEEEEEEEC
Confidence 6543321 123468766678899999999999999999999 58999987654211 125789999999999
Q ss_pred CCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce-eee--ecc-------cCCccceEEeeccCc-cccccCCCC
Q 017143 244 NGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI-VRF--ATR-------EAGREDVQTLKAEDD-RIEYEGLHH 312 (376)
Q Consensus 244 ~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~-~~~--~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~ 312 (376)
||.. ++..++..... ..+++|+|++|++.+...... ..+ ... .....+......... .........
T Consensus 220 ~g~~-~~~~s~~~~~~--~~~~~i~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (346)
T PRK11579 220 QRRV-VLHGTMLAAAE--SARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDGVLTLVEGEERVEETLLTLP 296 (346)
T ss_pred CeEE-EEEEEeeecCC--CCEEEEEecCceEEEcCCCccHHHHhCCCCCCCCCCCCCCccCeEEEecCCccceeeecCCC
Confidence 9855 77777765432 348999999999875321111 000 000 000001111100000 000011112
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEe
Q 017143 313 GSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAI 363 (376)
Q Consensus 313 ~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~ 363 (376)
+.+..++++|+++|+ ++.+++++.+++++++++++|+++|+++|++|.|
T Consensus 297 ~~~~~~~~~f~~~i~--~~~~~~~~~e~a~~~l~i~~a~~~Sa~~g~~v~l 345 (346)
T PRK11579 297 GNYPAYYAAIRDALN--GDGENPVPASQAIQVMELIELGIESAKHRATLCL 345 (346)
T ss_pred CCHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHHHHhcCCEEec
Confidence 445577899999998 7788899999999999999999999999999986
No 2
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=100.00 E-value=8.6e-55 Score=407.55 Aligned_cols=337 Identities=27% Similarity=0.370 Sum_probs=270.5
Q ss_pred CCceeEEEEeCChhh-HHHHHHhhhhcCCC-cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143 4 NDTVKYGIIGMGMMG-REHFINLHHLRSQG-VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g-~~~~~~~~~~~~~~-~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
|+++||||||+|.++ +.|++.+.+. ++ ++++++||++++ ++++++++|+++ ..|+|+++||+++++|+|+|+
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~--~~~~~~vav~d~~~~---~a~~~a~~~~~~-~~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAAL--GGGLELVAVVDRDPE---RAEAFAEEFGIA-KAYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhC--CCceEEEEEecCCHH---HHHHHHHHcCCC-cccCCHHHHhcCCCCCEEEEc
Confidence 458999999999766 4699999998 56 799999999998 788999999987 899999999999999999999
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV 161 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~ 161 (376)
||+..|++++++||+ +|||||||||++.|++|+++|+++|++ +|++++|++++||.|.++++|++|++|.||+|..+
T Consensus 75 tp~~~H~e~~~~AL~--aGkhVl~EKPla~t~~ea~~l~~~a~~-~~~~l~v~~~~Rf~p~~~~~k~li~~g~lG~v~~~ 151 (342)
T COG0673 75 TPNALHAELALAALE--AGKHVLCEKPLALTLEEAEELVELARK-AGVKLMVGFNRRFDPAVQALKELIDSGALGEVVSV 151 (342)
T ss_pred CCChhhHHHHHHHHh--cCCEEEEcCCCCCCHHHHHHHHHHHHH-cCCceeeehhhhcCHHHHHHHHHHhcCCcCceEEE
Confidence 999999999999999 999999999999999999999999954 59999999999999999999999999999999999
Q ss_pred EEeeccCCcc-cccCccccccccCCcccccccccHHHHHHHHhCC-CCeEEEEecccccccCccccCCCCCcccccEEEE
Q 017143 162 AIREHRFPFL-VKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGS-NPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI 239 (376)
Q Consensus 162 ~~~~~~~~~~-~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~-~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 239 (376)
+..+...... ..+..|+.....+||+++|+|+|.+|+++||+|. ++.+|++...... ....+.+|.+.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~gG~l~d~giH~lD~~~~l~G~~~~~~v~a~~~~~~--------~~~~~~~d~~~~~ 223 (342)
T COG0673 152 QASFSRDRPNPPPPPWWRFDRADGGGALLDLGIHDLDLLRFLLGSPEPVSVSAKARNSP--------PGEAGVDDSASAI 223 (342)
T ss_pred EEEeeccccccCCccceecccccCCCchhhhHHHHHHHHHHHcCCcchhheeeecccCC--------CCcccccceEEEE
Confidence 9865544332 3345665566678899999999999999999997 6888888766532 1123688999999
Q ss_pred EEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccceeeeecccCCccceEEeeccCccccccCCCCCCCHHHH
Q 017143 240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEH 319 (376)
Q Consensus 240 l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (376)
++|+||.......++........ .++|+|++|++.++.......... . ......................+..++
T Consensus 224 l~~~~g~~~~~~~~~~~~~~~~~-~~~i~G~~G~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (342)
T COG0673 224 LRFENGVLAVSWASRTAAGGYDV-RLEVYGTKGSLEVDDGNPTGELLD---G-RIGLDVRGGDGELLLVPRRGNPYEGEL 298 (342)
T ss_pred EEecCCceEEEEEEeeccCCcCc-eEEEEeccceEEecccccccccee---e-eccccccCCCccccCCCcccchhHHHH
Confidence 99999888887766554444433 389999999999875443322110 0 000000000000000011111567899
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEeh
Q 017143 320 LNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIE 364 (376)
Q Consensus 320 ~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~ 364 (376)
++|+++++ +..++..+.++++.++++++++++|..++++|.++
T Consensus 299 ~~f~~~i~--~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~v~~~ 341 (342)
T COG0673 299 EAFADAIR--GGGEPLVSGEDALKALRLAEAAYESAKEGRTVKLA 341 (342)
T ss_pred HHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHHHhhccCceeeCC
Confidence 99999998 66666899999999999999999999999999875
No 3
>PRK10206 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.1e-51 Score=380.60 Aligned_cols=329 Identities=15% Similarity=0.136 Sum_probs=248.4
Q ss_pred ceeEEEEeCChhhH-HHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGR-EHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
++||||||+|.++. .|++.+.... ++++|++|||++++ ++ +++++|+.. +.|+|+++||+++++|+|+|+||+
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~-~~~~l~av~d~~~~---~~-~~~~~~~~~-~~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK-DSWHVAHIFRRHAK---PE-EQAPIYSHI-HFTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC-CCEEEEEEEcCChh---HH-HHHHhcCCC-cccCCHHHHhcCCCCCEEEEeCCc
Confidence 48999999999774 6888775431 68999999999875 23 566778743 689999999999999999999999
Q ss_pred CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143 85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR 164 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~ 164 (376)
..|++++++||+ +|||||||||++.+.+|+++|++++ +++|+.+++++++||+|.++++|++|++|.||+|+.++.+
T Consensus 75 ~~H~~~~~~al~--aGkhVl~EKPla~~~~ea~~l~~~a-~~~~~~l~v~~~~R~~p~~~~~k~li~~g~iG~i~~i~~~ 151 (344)
T PRK10206 75 DSHFEYAKRALE--AGKNVLVEKPFTPTLAEAKELFALA-KSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESH 151 (344)
T ss_pred hHHHHHHHHHHH--cCCcEEEecCCcCCHHHHHHHHHHH-HHhCCEEEEEEeeeECHHHHHHHHHHHcCCCCCeEEEEEE
Confidence 999999999999 9999999999999999999999999 5569999999999999999999999999999999999886
Q ss_pred eccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecC
Q 017143 165 EHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN 244 (376)
Q Consensus 165 ~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~ 244 (376)
+..+. +..+......+||+++|+|+|.+|+++||+| +|.+|++....... ..+++|++.++++| +
T Consensus 152 ~~~~~----~~~~~~~~~~~gG~l~d~g~H~ld~~~~l~G-~~~~v~a~~~~~~~---------~~~~~d~~~~~l~f-~ 216 (344)
T PRK10206 152 FDYYR----PVAETKPGLPQDGAFYGLGVHTMDQIISLFG-RPDHVAYDIRSLRN---------KANPDDTFEAQLFY-G 216 (344)
T ss_pred ecccC----CccccccCCCCCceeechhHHHHHHHHHHcC-CCeEEEEEeecccC---------CCCCCceEEEEEEe-C
Confidence 43321 1111122235789999999999999999999 68899887543211 11578999999999 5
Q ss_pred CcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce-eeeec--ccC-------CccceEEeeccCcc-c-cccCCCC
Q 017143 245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI-VRFAT--REA-------GREDVQTLKAEDDR-I-EYEGLHH 312 (376)
Q Consensus 245 G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~-~~~~~--~~~-------~~~~~~~~~~~~~~-~-~~~~~~~ 312 (376)
|.++++..++..... ..+++|+|++|++..+..+.. +.+.. ... ...+......+... . .......
T Consensus 217 ~~~~~i~~s~~~~~~--~~~~~i~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (344)
T PRK10206 217 DLKAIVKTSHLVKID--YPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGVLEYVNDEGVTVREEMKPEM 294 (344)
T ss_pred CEEEEEEEeeeecCC--CCeEEEEeccceEEEecCCccHHHHhCCCCCCCCCCCcCCCCceEEEeccCCcceeeeeCCCC
Confidence 688999988865432 347999999999976422111 11000 000 00111111111110 0 0011123
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEe
Q 017143 313 GSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAI 363 (376)
Q Consensus 313 ~~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~ 363 (376)
+.+..++++|+++|+ ++.+|..+.++++++++|++|+++|+ +-.+|++
T Consensus 295 ~~~~~~~~~f~~ai~--~g~~p~v~~e~al~~l~iiea~~~sa-~~~~~~~ 342 (344)
T PRK10206 295 GDYGRVYDALYQTLT--HGAPNYVKESEVLTNLEILERGFEQA-SPATVTL 342 (344)
T ss_pred CCHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHHHhcC-Cccceec
Confidence 467788999999998 78888899999999999999999973 3445544
No 4
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-47 Score=335.25 Aligned_cols=340 Identities=26% Similarity=0.373 Sum_probs=270.8
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEE
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVV 79 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~ 79 (376)
|+..+.+|+||+|+|.++..++.++...+..+.+|+||+|++.+ +|+++|+++++| ++.|.+||+|++++++|+|+
T Consensus 1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~---~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVy 77 (351)
T KOG2741|consen 1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLE---RAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVY 77 (351)
T ss_pred CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHH---HHHHHHHhcCCCCCccccCHHHHhcCCCcCEEE
Confidence 66778899999999999999999999984459999999999776 899999999994 59999999999999999999
Q ss_pred EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceE
Q 017143 80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVK 159 (376)
Q Consensus 80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~ 159 (376)
|++|+..|++.++.+|. +|||||||||+|.|++|+++|+++|++ .|+.+|.|...||.|.+.++|+++.+|.+|+|.
T Consensus 78 i~~~~~qH~evv~l~l~--~~K~VL~EKPla~n~~e~~~iveaA~~-rgv~~meg~~~R~~P~~~~lke~l~~~~~Gdvk 154 (351)
T KOG2741|consen 78 ISTPNPQHYEVVMLALN--KGKHVLCEKPLAMNVAEAEEIVEAAEA-RGVFFMEGLWWRFFPRYAKLKELLSSGVLGDVK 154 (351)
T ss_pred eCCCCccHHHHHHHHHH--cCCcEEecccccCCHHHHHHHHHHHHH-cCcEEEeeeeeecCcHHHHHHHHHhccccccce
Confidence 99999999999999999 999999999999999999999999954 589999999999999999999999999999999
Q ss_pred EEEEeeccCCcccc--cCccc-cccccCCcccccccccHHHHHHHH--hCCCCeEEEEecccccccCccccCCCCCcccc
Q 017143 160 MVAIREHRFPFLVK--VNDWN-RFNENTGGTLVEKCCHFFDLMRLF--VGSNPMRVMASGAVDVNHKDEMYNGKVPDIID 234 (376)
Q Consensus 160 ~~~~~~~~~~~~~~--~~~w~-~~~~~~gG~l~d~g~H~ld~~~~l--~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d 234 (376)
.+.+. ++++...+ ++.-+ +....++|+++|+|+|.+.+.+|. |+ .+.++.+...+..+ ..+++|
T Consensus 155 ~v~~~-~~f~~~~~~l~~~~r~~~~~~g~G~l~D~g~Y~i~~~~~~~~f~-~~p~~~~~~g~v~n---------~~~v~~ 223 (351)
T KOG2741|consen 155 SVEVE-FGFPFPEDELPHKSRLRTGLLGGGALGDLGIYPIQAALWVNNFQ-EPPEVIAVDGRVLN---------SEGVDD 223 (351)
T ss_pred EEEEe-cCCCcchhhcccccchheecccCceehhhHHHHHHHHHHHHHhc-CCcceeecCccccc---------CCCccc
Confidence 99994 44443311 11111 223467899999999999999999 77 45555555433211 237899
Q ss_pred cEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEecCCeeeeeccc-ceeeeecccCCccceEEeeccCccccccCCCCC
Q 017143 235 NAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPE-SIVRFATREAGREDVQTLKAEDDRIEYEGLHHG 313 (376)
Q Consensus 235 ~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (376)
++.++|.|.+|+.+.+.+|+.. .......|.||+|.+++.+-. +...+.....+..+...+ ..++..+..-.+..
T Consensus 224 s~~~~l~f~~~~~~~~~cSf~~---~l~n~~~i~GtkG~~~l~d~~~p~~~~~~~~~~~~~~~~~-~p~~~~~~~~~n~~ 299 (351)
T KOG2741|consen 224 SVGAILDFTGGRTALILCSFLE---KLTNEAVITGTKGSLKLLDYWIPTKETLSRFGGREKEFPL-LPGEDVDTHYDNEA 299 (351)
T ss_pred ccceEEEeCCCceEEEEEehhh---hCCCceEEEecccceeeeeccccceeeeeeecCCCccccC-CCCCCcccccccch
Confidence 9999999999999999877632 233468889999999986211 111111222222222221 22333333334667
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCEE
Q 017143 314 SSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI 361 (376)
Q Consensus 314 ~~~~~l~~f~~~i~~~~~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v 361 (376)
++..|.+.+..+|+.++.+.+..+..+.+.++.+.++++++...+-++
T Consensus 300 ~m~~E~~~v~~~I~~~~~ea~~~~~~~S~~~~~i~D~i~~qi~v~~~~ 347 (351)
T KOG2741|consen 300 GMVYEAERVRECIKKGGKEADDIPHAESLKLMLIVDAIRRQIGVVYKA 347 (351)
T ss_pred hhHHHHHHHHHHHHhcCcCCCCCCchHHHHHHHHHHHHHHHhccccch
Confidence 888899999999998777778889999999999999999998765443
No 5
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.3e-35 Score=256.59 Aligned_cols=346 Identities=21% Similarity=0.222 Sum_probs=258.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
+. |||+|+|..++-.+|.++.. .|++.|++.|... .+++.++.-+++ ..|+.+++.|.++++|.|.|..||.
T Consensus 3 Pg-v~v~GTg~~arv~iP~l~e~---~f~v~A~w~Rt~~---ea~a~aa~~~v~-~~t~~~deiLl~~~vdlv~i~lpp~ 74 (367)
T KOG2742|consen 3 PG-VGVFGTGIFARVLIPLLKEE---GFEVKAIWGRTKT---EAKAKAAEMNVR-KYTSRLDEILLDQDVDLVCISLPPP 74 (367)
T ss_pred Cc-eeEeccChhHhhhhhhhhhc---cchHhhhhchhhh---HHHHhhhccchh-hccccchhhhccCCcceeEeccCCc
Confidence 45 99999999999889998887 4999999999443 455566666665 6677999999999999999999999
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEee
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIRE 165 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~~ 165 (376)
.|++++.+|+. .||||.||||. .++.+++++.+++ +...+...++++.||.|.+..+|+.|+.+.+|++..+..+.
T Consensus 75 ~~~eI~~kal~--~Gk~Vvcek~a-~~~d~~k~~~~~~-~s~~L~~lv~~~lrflp~f~~~k~~ie~i~~g~vv~~~~~v 150 (367)
T KOG2742|consen 75 LHAEIVVKALG--IGKHVVCEKPA-TNLDAAKMVVALA-YSPKLMSLVGHVLRFLPAFVTAKELIEEIYVGEVVRCDVRV 150 (367)
T ss_pred cceeeeecccc--CCceEEeccCC-cchhhhhhHHHHh-hchhHHHHhhhhhhhhHHHHHHHHHHHhccCCCeeeeeeee
Confidence 99999999999 99999999999 8999999999999 77899999999999999999999999999999999999988
Q ss_pred ccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEE-ecccccccCccccCCCCCcccccEEEEEEecC
Q 017143 166 HRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMA-SGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN 244 (376)
Q Consensus 166 ~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a-~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~ 244 (376)
.++..+....+|..+...+||.++|+|+|.+|++..||| .|.++.+ .-........+.-+-.....+|.+..+....+
T Consensus 151 ~~~~l~~k~~~W~~~p~~ggG~l~d~Gsh~Idl~~~L~G-~~~~~~~gl~~~~~~~~~ei~g~~~I~~~~~~~~~~l~~~ 229 (367)
T KOG2742|consen 151 DRGRLFRKSYNWKCDPLMGGGFLYDMGSHLIDLLTSLLG-TPASVVHGLLSQRTRQPLEIEGIRRITLHDFCLFQMLPIG 229 (367)
T ss_pred ecceecccCCccccccccCCceeecchHHHHHHHHHHhC-CchhhhhhhhhhhccCchhhcccceeeecchhhhceeecc
Confidence 888777777899998889999999999999999999999 4555433 32222222222222334567788888888889
Q ss_pred CcEEEEEEEEeecCCCCceEEEEEecCCeeeeecccce--eeeecccCCccceEEeeccCccccccCCCCCCCHHHHHHH
Q 017143 245 GSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESI--VRFATREAGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNF 322 (376)
Q Consensus 245 G~~~~l~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f 322 (376)
|.+++...+.. ++ . .++.|+|++|++..+..++. .......+... .... +....+....-.+.-.+.+.|
T Consensus 230 ~i~~t~~l~~~-~~--~-~~~~I~Gs~Gt~~~~g~DpqE~~l~~~m~~~~~---~~g~-d~~~~Y~~g~~~~V~a~~~~f 301 (367)
T KOG2742|consen 230 GILSTVALSCG-PG--F-MEVRIVGSKGTLVVRGGDPQEEQLHGDMLPVSE---GGGT-DRPILYLKGTLWMVPAERDAF 301 (367)
T ss_pred ceEEeeecccC-Cc--c-eEEEEEecCceEEEecCCcchhhhhccccccCC---CCCc-cceeEeecCccccccHHHHhh
Confidence 88888665433 33 3 58999999999987654421 11100000000 0000 000111011111222455666
Q ss_pred HHHHHhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHcCCEEEehhhhhhhcc
Q 017143 323 LSAIRAKG----AKVPAVDLQDGLISVAIGVAAQLSIEKGRFIAIEEVMEELNC 372 (376)
Q Consensus 323 ~~~i~~~~----~~~~~~~~~d~~~~~~ii~a~~~S~~~g~~v~~~~~~~~~~~ 372 (376)
....-... ...+..+++|++...-+.+++..|+++|+++.+..+++.-++
T Consensus 302 ~~~~s~ks~~~tp~~~~~~F~d~l~~a~V~~aie~s~k~gq~~~Vek~~e~~~~ 355 (367)
T KOG2742|consen 302 HNPESTKSWVQTPVSMYATFEDGLYVACVVAAIESSAKNGQVVAVEKITEAPYK 355 (367)
T ss_pred cCCCCccccccccccchhhhhhhhHHHHHHHHHhcccCCCceEEeeeccccccc
Confidence 66543100 112347899999999999999999999999999888876554
No 6
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=99.97 E-value=8e-29 Score=226.90 Aligned_cols=223 Identities=15% Similarity=0.136 Sum_probs=169.8
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCC-CcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEe--
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQ-GVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS-- 81 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~-~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~-- 81 (376)
+++||||||+ .+|+.|++++.+. + +++|+||||++++ ++++++++||++ .|+|+++|+++.++|+|+|+
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~--~~~~eLvaV~d~~~e---rA~~~A~~~gi~--~y~~~eell~d~Di~~V~ipt~ 73 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAA--PERFELAGILAQGSE---RSRALAHRLGVP--LYCEVEELPDDIDIACVVVRSA 73 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhC--CCCcEEEEEEcCCHH---HHHHHHHHhCCC--ccCCHHHHhcCCCEEEEEeCCC
Confidence 4799999999 5799999999987 6 8999999999998 788999999987 89999999988777777773
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC----CCCc
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG----SIGQ 157 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g----~iG~ 157 (376)
+|+..|++++++||+ +|||||||||++ .+|+++|+++|+ ++|+.+++ .||.|.+..+|++|++| .+|+
T Consensus 74 ~P~~~H~e~a~~aL~--aGkHVL~EKPla--~~Ea~el~~~A~-~~g~~l~v---~~f~p~~~~vr~~i~~~~~i~~~~~ 145 (343)
T TIGR01761 74 IVGGQGSALARALLA--RGIHVLQEHPLH--PRDIQDLLRLAE-RQGRRYLV---NTFYPHLPAVRRFIEYARQLHHRRG 145 (343)
T ss_pred CCCccHHHHHHHHHh--CCCeEEEcCCCC--HHHHHHHHHHHH-HcCCEEEE---EecCHHHHHHHHHHHcchhHhhcCC
Confidence 478899999999999 999999999998 799999999995 55999998 46999999999999998 6777
Q ss_pred eEEEEEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhC-CCCeEEEEecccccccCccccCCCCCcccccE
Q 017143 158 VKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVG-SNPMRVMASGAVDVNHKDEMYNGKVPDIIDNA 236 (376)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G-~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~ 236 (376)
+.++...+. -++++++ +|++.+++| ..+.++.+.+... . ...+-
T Consensus 146 ~~~i~~~~~------------------~~v~~dl----ldil~~~lgg~~~~~i~~~~~~~---~----------~~~f~ 190 (343)
T TIGR01761 146 PRFVEATCG------------------VQVLYST----LDILARALGGVGPWSLESPGGDL---S----------PFPMR 190 (343)
T ss_pred CCcceeecC------------------Cccccch----HHHHHHHhCCCCceEEEeecccc---C----------CCCce
Confidence 766665321 1234554 889999998 6777887765210 0 01234
Q ss_pred EEEEEecCCcEEEEEEEEeecCCCC------ceEEEEEecCCeeeeecc
Q 017143 237 YVIVEFENGSRGMLDLCMFAEGSKN------EQEIVVVGNTGKGEAFVP 279 (376)
Q Consensus 237 ~~~l~~~~G~~~~l~~~~~~~~~~~------~~~~~i~Gt~G~i~~~~~ 279 (376)
.+.+...+ ...+|..-........ -.++.+..+.|++.+...
T Consensus 191 ~~~~~i~~-~p~~l~~~n~l~~~dpD~~~~~~hri~~g~~~G~L~L~~~ 238 (343)
T TIGR01761 191 GLQGVIAG-VPLSLNLQNYLDPADPDGHSLIMHRLSLGTPEGHLSLVSS 238 (343)
T ss_pred EEEEEECC-ceEEEEEecccCCCCCcchhhhheeEEEeccCcEEEEecC
Confidence 44555533 4445544222211111 227888888888887543
No 7
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.96 E-value=8.9e-29 Score=195.78 Aligned_cols=120 Identities=34% Similarity=0.590 Sum_probs=111.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
+||||||+|.+|+.|++.+.... +++++++++|++++ ++++++++++++ .|+|+++|++++++|+|+|+||+..
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~~~~---~~~~~~~~~~~~--~~~~~~~ll~~~~~D~V~I~tp~~~ 74 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDPDPE---RAEAFAEKYGIP--VYTDLEELLADEDVDAVIIATPPSS 74 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECSSHH---HHHHHHHHTTSE--EESSHHHHHHHTTESEEEEESSGGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeCCHH---HHHHHHHHhccc--chhHHHHHHHhhcCCEEEEecCCcc
Confidence 69999999999999998887763 79999999999998 677788899987 9999999999888999999999999
Q ss_pred cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143 87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~ 135 (376)
|.+++++|++ +|+||+||||++.+.+++++|.++++ ++|+.++|||
T Consensus 75 h~~~~~~~l~--~g~~v~~EKP~~~~~~~~~~l~~~a~-~~~~~~~Vg~ 120 (120)
T PF01408_consen 75 HAEIAKKALE--AGKHVLVEKPLALTLEEAEELVEAAK-EKGVKVMVGY 120 (120)
T ss_dssp HHHHHHHHHH--TTSEEEEESSSSSSHHHHHHHHHHHH-HHTSCEEEE-
T ss_pred hHHHHHHHHH--cCCEEEEEcCCcCCHHHHHHHHHHHH-HhCCEEEEeC
Confidence 9999999999 99999999999999999999999995 4599999986
No 8
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.91 E-value=2.3e-23 Score=186.60 Aligned_cols=168 Identities=17% Similarity=0.249 Sum_probs=138.8
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhh-hcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHH-LRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV 79 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~-~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~ 79 (376)
|++|+++||||||+|.+|+.|+..+.. . +++++++|+|++++ ++++++++++.. ..|+++++++.+ +|+|+
T Consensus 1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~--~~~el~aV~dr~~~---~a~~~a~~~g~~-~~~~~~eell~~--~D~Vv 72 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRGL--PGLTLSAVAVRDPQ---RHADFIWGLRRP-PPVVPLDQLATH--ADIVV 72 (271)
T ss_pred CCCCCeeEEEEECccHHHHHHHHHHHhcC--CCeEEEEEECCCHH---HHHHHHHhcCCC-cccCCHHHHhcC--CCEEE
Confidence 888889999999999999999999876 4 78999999999987 677888888864 688999999865 89999
Q ss_pred EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE--eeccccCHHHHHHHHHHHcCCCCc
Q 017143 80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV--GLEYRYMPPVAKLIQIVKSGSIGQ 157 (376)
Q Consensus 80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v--~~~~r~~p~~~~~k~~i~~g~iG~ 157 (376)
+|+|++.|.+++.++|+ +||||+|++.. .+.++++|.+++ +++|+++++ |+..+| +.+++|.+|+
T Consensus 73 i~tp~~~h~e~~~~aL~--aGk~Vi~~s~g--al~~~~~L~~~A-~~~g~~l~v~sGa~~g~--------d~l~~g~iG~ 139 (271)
T PRK13302 73 EAAPASVLRAIVEPVLA--AGKKAIVLSVG--ALLRNEDLIDLA-RQNGGQIIVPTGALLGL--------DAVTAAAEGT 139 (271)
T ss_pred ECCCcHHHHHHHHHHHH--cCCcEEEecch--hHHhHHHHHHHH-HHcCCEEEEcchHHHhH--------HHHHHHHcCC
Confidence 99999999999999999 99999999755 446889999999 556999999 555555 5789999999
Q ss_pred eEEEEEeeccCCcccccCccccccccCCcccccccccHHHHHH
Q 017143 158 VKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMR 200 (376)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~ 200 (376)
+..+.+.....+ ..|. |++.++...|++|.++
T Consensus 140 ~~~v~~~trkpp-----~~~~------g~~~~~~~~~dld~~~ 171 (271)
T PRK13302 140 IHSVKMITRKPP-----DGLK------GAPFLVTNNIDIDGLT 171 (271)
T ss_pred ceEEEEEEecCc-----hHhc------cChhhhhcCCCccccc
Confidence 999988533322 4453 5566677788888543
No 9
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.84 E-value=2.1e-20 Score=166.77 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=125.8
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC---CCCCEEEE
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS---GLCDVVVV 80 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~D~V~i 80 (376)
|+++||||||+|.+|..|+..+.+. +++++++++|+++++ ...+.++++|++ ..|+++++|+++ +++|+|++
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdid~es--~gla~A~~~Gi~-~~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGIDPES--DGLARARRLGVA-TSAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeCChhh--HHHHHHHHcCCC-cccCCHHHHHhCcCCCCCCEEEE
Confidence 4689999999999999999998886 899999999999874 344668889987 567999999998 78999999
Q ss_pred eCCCCccHHHHHHHHcCCCCCeEEEecCCC--------CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143 81 STPNMTHYQILMDIINHPKPHHVLVEKPLC--------TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS 152 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a--------~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 152 (376)
+||+..|.+++.++++ +|+||++|||.+ .|.++. . +..++.+..+.+.++.|.+..+++ +.+
T Consensus 77 AT~a~~H~e~a~~a~e--aGk~VID~sPA~~~PlvVP~VN~~~~------~-~~~~~~iia~p~~ati~~v~Al~~-v~~ 146 (302)
T PRK08300 77 ATSAGAHVRHAAKLRE--AGIRAIDLTPAAIGPYCVPAVNLDEH------L-DAPNVNMVTCGGQATIPIVAAVSR-VAP 146 (302)
T ss_pred CCCHHHHHHHHHHHHH--cCCeEEECCccccCCcccCcCCHHHH------h-cccCCCEEECccHHHHHHHHHhcc-cCc
Confidence 9999999999999999 999999999999 888865 3 334678999999999999999999 888
Q ss_pred CCCCceEE
Q 017143 153 GSIGQVKM 160 (376)
Q Consensus 153 g~iG~i~~ 160 (376)
+.+|+|..
T Consensus 147 ~~~~eIva 154 (302)
T PRK08300 147 VHYAEIVA 154 (302)
T ss_pred Cceeeeee
Confidence 89999983
No 10
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.84 E-value=2.1e-20 Score=167.26 Aligned_cols=227 Identities=17% Similarity=0.169 Sum_probs=156.9
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
|+||||||+|.+|+.|+..+.+. ++++++++++++... ++ ..+.++..+..|+|++++ .+++|+|++|||+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~-~~---~~~~~~~~~~~~~d~~~l--~~~~DvVve~t~~~ 72 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD--PDLRVDWVIVPEHSI-DA---VRRALGEAVRVVSSVDAL--PQRPDLVVECAGHA 72 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC--CCceEEEEEEcCCCH-HH---HhhhhccCCeeeCCHHHh--ccCCCEEEECCCHH
Confidence 47999999999999999999887 899999999765431 11 222221113588999998 46799999999999
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCCC-HHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCTT-VADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR 164 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~-~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~ 164 (376)
.|.+++.++|+ +||||+||||.+.+ .+...+|.++| +++|+.+++ .+.+...+.+++.+.+|.+..+.++
T Consensus 73 ~~~e~~~~aL~--aGk~Vvi~s~~Al~d~~~~~~L~~~A-~~~g~~l~v------~sga~gg~d~l~~~~~g~~~~v~~~ 143 (265)
T PRK13303 73 ALKEHVVPILK--AGIDCAVISVGALADEALRERLEQAA-EAGGARLHL------LSGAIGGIDALAAAKEGGLDEVTYT 143 (265)
T ss_pred HHHHHHHHHHH--cCCCEEEeChHHhcCHHHHHHHHHHH-HHCCCEEEE------eChHhhCHHHHHHHHhCCceEEEEE
Confidence 99999999999 99999999999876 55578899999 556888777 5566677899999999999999885
Q ss_pred eccCCcccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecC
Q 017143 165 EHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN 244 (376)
Q Consensus 165 ~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~ 244 (376)
....+ ..|+.... ...+| +.++.| +..-..+........ | ...+++.+.+.+.+
T Consensus 144 ~~k~p-----~~~~~~~~----------~~~~d-l~~~~~-~~~~f~G~a~ea~~~----~-----p~n~nvaaa~~la~ 197 (265)
T PRK13303 144 GRKPP-----KSWRGTPA----------EQLCD-LDALTE-PTVIFEGSAREAARL----F-----PKNANVAATVALAG 197 (265)
T ss_pred EecCh-----hHhCcChh----------Hhccc-cccccc-CeEEEEeCHHHHHHH----C-----CchhhHHHHHHHhc
Confidence 43322 35543221 12567 667777 455555554432211 1 12234444444432
Q ss_pred -C---cEEEEEEEEeecC-CCCceEEEEEecCCeeeeec
Q 017143 245 -G---SRGMLDLCMFAEG-SKNEQEIVVVGNTGKGEAFV 278 (376)
Q Consensus 245 -G---~~~~l~~~~~~~~-~~~~~~~~i~Gt~G~i~~~~ 278 (376)
| ..+.+..+ |+ ..+..++++.|+-|.+++..
T Consensus 198 ~g~d~~~v~~~ad---p~~~~n~h~i~~~g~~g~~~~~~ 233 (265)
T PRK13303 198 LGLDRTRVELIAD---PAVTRNVHEIEARGAFGEFEFEM 233 (265)
T ss_pred cCccceEEEEEEC---CCCCCceEEEEEEeccEEEEEEE
Confidence 2 34444322 22 23445999999999987653
No 11
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.83 E-value=4.1e-20 Score=164.68 Aligned_cols=140 Identities=18% Similarity=0.197 Sum_probs=119.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
++||||||+|.+|..|+..+.+. +++++++++|+++++. ..++++++|++ ..|++++++++++++|+|+++||+.
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~d~es~--~la~A~~~Gi~-~~~~~~e~ll~~~dIDaV~iaTp~~ 75 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGIDPESD--GLARARELGVK-TSAEGVDGLLANPDIDIVFDATSAK 75 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeCCcccH--HHHHHHHCCCC-EEECCHHHHhcCCCCCEEEECCCcH
Confidence 48999999999999998888876 8999999999998742 33567889987 6678999999998999999999999
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCC--------CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCc
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLC--------TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQ 157 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a--------~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~ 157 (376)
.|.+++.++++ +||||+||||++ .+.+++. +..++.+..+.+.++.|.+..++++.+.+ .++
T Consensus 76 ~H~e~a~~al~--aGk~VIdekPa~~~plvvp~VN~~~~~-------~~~~~~iv~c~~~atip~~~al~r~~d~~-~~~ 145 (285)
T TIGR03215 76 AHARHARLLAE--LGKIVIDLTPAAIGPYVVPAVNLDEHL-------DAPNVNMVTCGGQATIPIVAAISRVAPVH-YAE 145 (285)
T ss_pred HHHHHHHHHHH--cCCEEEECCccccCCccCCCcCHHHHh-------cCcCCCEEEcCcHHHHHHHHHHHHhhccc-cEE
Confidence 99999999999 999999999999 5655433 33366788889999999999999998876 556
Q ss_pred eEE
Q 017143 158 VKM 160 (376)
Q Consensus 158 i~~ 160 (376)
+..
T Consensus 146 iv~ 148 (285)
T TIGR03215 146 IVA 148 (285)
T ss_pred EEE
Confidence 554
No 12
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=99.82 E-value=1.9e-19 Score=156.00 Aligned_cols=122 Identities=14% Similarity=0.175 Sum_probs=110.5
Q ss_pred CcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143 32 GVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCT 111 (376)
Q Consensus 32 ~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~ 111 (376)
++++++|||++++ +++++++++|++ .|+++++|++ +++|+|++|||+..|.+++.++|+ +||||+||||.++
T Consensus 1 ~~eLvaV~D~~~e---~a~~~a~~~g~~--~~~d~~eLl~-~~vDaVviatp~~~H~e~a~~aL~--aGkhVl~~s~gAl 72 (229)
T TIGR03855 1 NFEIAAVYDRNPK---DAKELAERCGAK--IVSDFDEFLP-EDVDIVVEAASQEAVKEYAEKILK--NGKDLLIMSVGAL 72 (229)
T ss_pred CeEEEEEECCCHH---HHHHHHHHhCCc--eECCHHHHhc-CCCCEEEECCChHHHHHHHHHHHH--CCCCEEEECCccc
Confidence 4789999999988 788889999965 8999999998 469999999999999999999999 9999999999998
Q ss_pred -CHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEeeccC
Q 017143 112 -TVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRF 168 (376)
Q Consensus 112 -~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~ 168 (376)
+.+++++|.+++ +++|++++++ +.+...++.|++|.+|.+..+.++....
T Consensus 73 ad~e~~~~l~~aA-~~~g~~l~i~------sGai~g~d~l~a~~ig~~~~V~i~~~k~ 123 (229)
T TIGR03855 73 ADRELRERLREVA-RSSGRKVYIP------SGAIGGLDALKAASLGRIERVVLTTTKP 123 (229)
T ss_pred CCHHHHHHHHHHH-HhcCCEEEEC------hHHHHHHHHHHhcccCCceEEEEEEecC
Confidence 789999999999 5569999999 5889999999999999999999864443
No 13
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.82 E-value=2.4e-19 Score=160.53 Aligned_cols=146 Identities=17% Similarity=0.170 Sum_probs=124.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
|+||||||+|.+|+.|+..+.+.. .++++++++|++++ ++++++++++.+ .|+++++++. ++|+|++|+|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~~~~---~a~~~a~~~~~~--~~~~~~ell~--~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGR-INAELYAFYDRNLE---KAENLASKTGAK--ACLSIDELVE--DVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECCCHH---HHHHHHHhcCCe--eECCHHHHhc--CCCEEEEcCChH
Confidence 369999999999999999887751 27999999999987 567777788854 8999999993 599999999999
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCC-CHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCT-TVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR 164 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~-~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~ 164 (376)
.|.+++.++++ +|+||+|++|.++ +.+.+++|.++| +++|+.+++ .+.....++.|+++.+|++..+.+.
T Consensus 73 ~~~~~~~~al~--~Gk~Vvv~s~gAl~d~~~~~~L~~aA-~~~g~~l~v------~sga~~g~d~i~a~~~G~i~~V~~~ 143 (265)
T PRK13304 73 AVEEVVPKSLE--NGKDVIIMSVGALADKELFLKLYKLA-KENNCKIYL------PSGAIVGLDGIKAASLGEIKSVTLT 143 (265)
T ss_pred HHHHHHHHHHH--cCCCEEEEchHHhcCHHHHHHHHHHH-HHcCCEEEE------eCchHHhHHHHHHHhcCCccEEEEE
Confidence 99999999999 8999999999876 788899999999 556888877 2345666899999999999999886
Q ss_pred eccC
Q 017143 165 EHRF 168 (376)
Q Consensus 165 ~~~~ 168 (376)
....
T Consensus 144 ~~k~ 147 (265)
T PRK13304 144 TRKP 147 (265)
T ss_pred EecC
Confidence 4443
No 14
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=99.79 E-value=6.4e-18 Score=152.34 Aligned_cols=189 Identities=10% Similarity=0.033 Sum_probs=132.5
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
+++||+|||+|.+|+.|++.+.+. ++++|++|+|+++.. +. .+..++ ..+.+.++++ +++|+|++|||+
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~--~~---~~~~~v--~~~~d~~e~l--~~iDVViIctPs 70 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAE--TL---DTETPV--YAVADDEKHL--DDVDVLILCMGS 70 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHH--HH---hhcCCc--cccCCHHHhc--cCCCEEEEcCCC
Confidence 479999999999999999999887 899999999998631 22 222332 2445666666 459999999999
Q ss_pred CccHHHHHHHHcCCCCCeEEEecCCCCCH-HHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143 85 MTHYQILMDIINHPKPHHVLVEKPLCTTV-ADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~-~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~ 163 (376)
..|.+.+.++|+ +|+||.++||...+. +..++|-++| ++++....++ ..|+|.+..+++++.+..+-+=....+
T Consensus 71 ~th~~~~~~~L~--aG~NVV~s~~~h~~~p~~~~~ld~AA-k~~g~vsvi~--~GwDPG~~si~r~~~ea~lp~g~~yt~ 145 (324)
T TIGR01921 71 ATDIPEQAPYFA--QFANTVDSFDNHRDIPRHRQVMDAAA-KAAGNVSVIS--TGWDPGMFSINRVYGEAVLPKGQTYTF 145 (324)
T ss_pred ccCHHHHHHHHH--cCCCEEECCCcccCCHHHHHHHHHHH-HHcCCEEEEE--CCCCcChHHHHHHHHhccCCCCcceec
Confidence 999999999999 999999999987765 4555566666 5433333333 799999999999998777654433332
Q ss_pred eeccCCcccccCccccccccCC--cccccccccHHHHHHHHh-CCCCeEEEEecc
Q 017143 164 REHRFPFLVKVNDWNRFNENTG--GTLVEKCCHFFDLMRLFV-GSNPMRVMASGA 215 (376)
Q Consensus 164 ~~~~~~~~~~~~~w~~~~~~~g--G~l~d~g~H~ld~~~~l~-G~~~~~V~a~~~ 215 (376)
+++...+..++--+...|. +..+. +..+|.+.+++ | ++.++.+...
T Consensus 146 ---wG~g~s~ghs~a~~~~~Gv~~a~~~t--ip~~dal~~v~~G-e~~~l~~~~~ 194 (324)
T TIGR01921 146 ---WGPGLSQGHSDAVRRIDGVKKAVQYT--LPSEDALEKARRG-EAPELTGKQT 194 (324)
T ss_pred ---cCCCcCchhhhhhcccCCcccceEEE--EehHHHHHHHHcC-Cccccccccc
Confidence 2233333333322222221 13444 55999999999 7 6667766643
No 15
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.77 E-value=1.1e-17 Score=171.37 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=132.3
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcE------------EEEEeCCChhhHHHHHHHHHhc-CCC-CCc-cCCHHHH
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVS------------VVCIADPHLQSRQQALKLANAF-DWP-LKV-FPGHQEL 69 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~------------~~~v~d~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~ 69 (376)
++.||+|||+|.+|+.|+..|.+. ++++ +++|+|++.+ .++++++++ ++. +.. +.|.+++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~~~~---~a~~la~~~~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASLYLK---DAKETVEGIENAEAVQLDVSDSESL 642 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECCCHH---HHHHHHHhcCCCceEEeecCCHHHH
Confidence 356999999999999999999887 6655 7899999987 677777776 543 233 7888888
Q ss_pred hhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHH--H
Q 017143 70 LDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAK--L 146 (376)
Q Consensus 70 l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~--~ 146 (376)
++. ..+|+|++|+|+..|.++++.|++ +|+||++|| .+.+++++|.++| +++|+.+++++. |+|.+.. +
T Consensus 643 ~~~v~~~DaVIsalP~~~H~~VAkaAie--aGkHvv~ek---y~~~e~~~L~e~A-k~AGV~~m~e~G--lDPGid~~lA 714 (1042)
T PLN02819 643 LKYVSQVDVVISLLPASCHAVVAKACIE--LKKHLVTAS---YVSEEMSALDSKA-KEAGITILCEMG--LDPGIDHMMA 714 (1042)
T ss_pred HHhhcCCCEEEECCCchhhHHHHHHHHH--cCCCEEECc---CCHHHHHHHHHHH-HHcCCEEEECCc--cCHHHHHHHH
Confidence 872 349999999999999999999999 999999999 7899999999999 556999999999 9999999 9
Q ss_pred HHHHHcC--CCCceEEEEEeeccCCc
Q 017143 147 IQIVKSG--SIGQVKMVAIREHRFPF 170 (376)
Q Consensus 147 k~~i~~g--~iG~i~~~~~~~~~~~~ 170 (376)
+++|+++ ++|+|..+..++...|.
T Consensus 715 ~~~Id~~~~~~GkI~s~~s~~GGLP~ 740 (1042)
T PLN02819 715 MKMIDDAHERGGKVKSFTSYCGGLPS 740 (1042)
T ss_pred HHHHHhhcccCCcEEEEEEEEcCccC
Confidence 9999988 89999999997766663
No 16
>PRK06270 homoserine dehydrogenase; Provisional
Probab=99.77 E-value=6.4e-18 Score=156.66 Aligned_cols=150 Identities=22% Similarity=0.226 Sum_probs=120.8
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhc-------CCCcEEEEEeCCChh-------hHHHHHHHHHhcCCCCCc------cCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLR-------SQGVSVVCIADPHLQ-------SRQQALKLANAFDWPLKV------FPG 65 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~-------~~~~~~~~v~d~~~~-------~~~~~~~~~~~~~~~~~~------~~~ 65 (376)
++||+|+|+|.+|+.++..+.+.+ +.+++|++|+|++.. ..+++.+++++++.. .. +.+
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~-~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKL-ADYPEGGGEIS 80 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCc-ccCccccccCC
Confidence 599999999999999998886652 237999999996421 223556666666532 23 348
Q ss_pred HHHHhhCCCCCEEEEeCCCCcc-----HHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEEE-Eeecc
Q 017143 66 HQELLDSGLCDVVVVSTPNMTH-----YQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILVQ-VGLEY 137 (376)
Q Consensus 66 ~~~~l~~~~~D~V~i~t~~~~h-----~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~ 137 (376)
+++++.++++|+|+++||+..| .+++++||+ +|+||+|+ ||++.+. .+|.++|+ ++|+.++ .+...
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVtaNK~pla~~~---~eL~~~A~-~~g~~~~~ea~v~ 154 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVTSNKGPLALAY---KELKELAK-KNGVRFRYEATVG 154 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEcCCcHHHHhhH---HHHHHHHH-HcCCEEEEeeeee
Confidence 9999998889999999999887 789999999 99999996 8998865 46888884 4577665 58899
Q ss_pred ccCHHHHHHHHHHHcCCCCceEEEE
Q 017143 138 RYMPPVAKLIQIVKSGSIGQVKMVA 162 (376)
Q Consensus 138 r~~p~~~~~k~~i~~g~iG~i~~~~ 162 (376)
++.|.++.+|+++..+.||+|..+-
T Consensus 155 ~glPii~~l~~~l~g~~I~~I~GIl 179 (341)
T PRK06270 155 GAMPIINLAKETLAGNDIKSIKGIL 179 (341)
T ss_pred echhHHHHHHhhcccCceEEEEEEE
Confidence 9999999999999999999987764
No 17
>PRK06349 homoserine dehydrogenase; Provisional
Probab=99.76 E-value=6.6e-18 Score=161.07 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=122.1
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhc-------CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCE
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLR-------SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDV 77 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~-------~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~ 77 (376)
+++||||||+|.+|+.++..+.+.. +.++++++|++++.++ ...+ ...+ ...++|+++++.++++|+
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~---~~~~-~~~~--~~~~~d~~~ll~d~~iDv 75 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK---DRGV-DLPG--ILLTTDPEELVNDPDIDI 75 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh---ccCC-CCcc--cceeCCHHHHhhCCCCCE
Confidence 4799999999999998887775541 2379999999998763 2211 1112 357899999999999999
Q ss_pred EEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE-EEeeccccCHHHHHHHHHHHcCCC
Q 017143 78 VVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV-QVGLEYRYMPPVAKLIQIVKSGSI 155 (376)
Q Consensus 78 V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~-~v~~~~r~~p~~~~~k~~i~~g~i 155 (376)
|+++|++ ..|++++++||+ +||||+||+| +....++++|.++|+ ++|+.+ +.+...++.|.++.+++.+.++.|
T Consensus 76 Vve~tg~~~~~~~~~~~aL~--~GkhVVtaNK-~~~a~~~~eL~~lA~-~~gv~l~fEasV~ggiPii~~l~~~l~~~~I 151 (426)
T PRK06349 76 VVELMGGIEPARELILKALE--AGKHVVTANK-ALLAVHGAELFAAAE-EKGVDLYFEAAVAGGIPIIKALREGLAANRI 151 (426)
T ss_pred EEECCCCchHHHHHHHHHHH--CCCeEEEcCH-HHHHHHHHHHHHHHH-HcCCcEEEEEEeeccCchHHHHHhhcccCCe
Confidence 9999876 688999999999 9999999988 678899999999995 457754 567888999999999999999999
Q ss_pred CceEEEE
Q 017143 156 GQVKMVA 162 (376)
Q Consensus 156 G~i~~~~ 162 (376)
|+|..+-
T Consensus 152 ~~I~GIl 158 (426)
T PRK06349 152 TRVMGIV 158 (426)
T ss_pred eEEEEEE
Confidence 9998763
No 18
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.74 E-value=2.6e-17 Score=146.78 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=121.1
Q ss_pred ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
++||+|||+ |.||+.++..+... ++++|++++|+++++. ... .+++++ .|++++++++ ++|+|+.+|||
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~~~~---~~~-~~~~i~--~~~dl~~ll~--~~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPGSPL---VGQ-GALGVA--ITDDLEAVLA--DADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccc---ccc-CCCCcc--ccCCHHHhcc--CCCEEEECCCH
Confidence 479999998 99999999888877 8899999999988742 222 456654 8899999997 49999999999
Q ss_pred CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143 85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~ 163 (376)
+.|.+++..|++ +|+||+|+ |.+.+.+++++|.+++ ++.++.+..++..++....+.++++. +.+|. +.+++
T Consensus 71 ~~~~~~~~~al~--~G~~vvig-ttG~s~~~~~~l~~aa-~~~~v~~s~n~s~g~~~~~~l~~~aa--~~l~~-~d~ei 142 (257)
T PRK00048 71 EATLENLEFALE--HGKPLVIG-TTGFTEEQLAELEEAA-KKIPVVIAPNFSIGVNLLMKLAEKAA--KYLGD-YDIEI 142 (257)
T ss_pred HHHHHHHHHHHH--cCCCEEEE-CCCCCHHHHHHHHHHh-cCCCEEEECcchHHHHHHHHHHHHHH--HhcCC-CCEEE
Confidence 999999999999 99999999 8899999999999977 66788889999999999999999988 47884 44444
No 19
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=99.67 E-value=6.8e-15 Score=135.11 Aligned_cols=208 Identities=17% Similarity=0.171 Sum_probs=156.0
Q ss_pred eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEe-CCChhhHHHHHHHHHhcCCC-C-----------------------
Q 017143 7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIA-DPHLQSRQQALKLANAFDWP-L----------------------- 60 (376)
Q Consensus 7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~-d~~~~~~~~~~~~~~~~~~~-~----------------------- 60 (376)
.||+|+| +|.+|..|+..+.+++ ..++|++++ +.+.+ ++.+++++|+-. +
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p-~~f~VvaLaa~~n~~---~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~ 77 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNP-DRFRVVALSAGKNVE---LLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVL 77 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCc-cccEEEEEEcCCCHH---HHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEE
Confidence 5899999 8999999999998873 489999999 66665 555566655432 0
Q ss_pred CccCCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc
Q 017143 61 KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY 139 (376)
Q Consensus 61 ~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~ 139 (376)
..-+.+.++++.+++|+|+++.+-..|...+++|++ +||+|.+ +|+.-. .....+.+++++. |+.+..-
T Consensus 78 ~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~--aGK~VaLANKEslV--~aG~~i~~~a~~~-g~~i~PV----- 147 (385)
T PRK05447 78 AGEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIR--AGKRIALANKESLV--CAGELVMDAAKKS-GAQILPV----- 147 (385)
T ss_pred EChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHH--CCCcEEEeCHHHHH--hhHHHHHHHHHHc-CCeEEEE-----
Confidence 012346677777889999999999999999999999 9999999 999754 7777888888544 5444333
Q ss_pred CHHHHHHHHHHHcC---CCCceEEEEEeeccCCccc---------------ccCccccccccC--CcccccccccHHHHH
Q 017143 140 MPPVAKLIQIVKSG---SIGQVKMVAIREHRFPFLV---------------KVNDWNRFNENT--GGTLVEKCCHFFDLM 199 (376)
Q Consensus 140 ~p~~~~~k~~i~~g---~iG~i~~~~~~~~~~~~~~---------------~~~~w~~~~~~~--gG~l~d~g~H~ld~~ 199 (376)
++....+++.+++| .++++.... ..+++.. .-++|..-++.. .-.|++-|.|.++ +
T Consensus 148 DSEh~ai~q~l~~~~~~~i~~iilTA---SGGpFr~~~~~~l~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IE-A 223 (385)
T PRK05447 148 DSEHSAIFQCLPGEKQEGVEKIILTA---SGGPFRDWPLEELANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIE-A 223 (385)
T ss_pred CHHHHHHHHHhcCCCccccceEEEec---CCCcccCCCHHHHhcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHh-H
Confidence 99999999999988 466665432 3444332 125677654432 3368999999999 9
Q ss_pred HHHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143 200 RLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG 248 (376)
Q Consensus 200 ~~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~ 248 (376)
.||||-++.+|.+..+. ....+.+++|.||.+.
T Consensus 224 ~~Lf~~~~~~I~vvIHp----------------qSivHsmVef~DGsv~ 256 (385)
T PRK05447 224 HWLFGLPYEQIEVVIHP----------------QSIIHSMVEYVDGSVL 256 (385)
T ss_pred HHHcCCChhhEEEEECC----------------cCceeEEEEEeCCcEE
Confidence 99999878888877543 2458899999998664
No 20
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.65 E-value=1e-15 Score=137.04 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=102.7
Q ss_pred eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCC-hhhH-HHHHHHHH--hcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143 7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPH-LQSR-QQALKLAN--AFDWPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~-~~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
+||+|+| +|.||+.++..+.+. ++++|++++|+. +... ..+.++.. .+++ ..|+|++++ . .++|+|+++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv--~~~~d~~~l-~-~~~DvVIdf 75 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQGTDAGELAGIGKVGV--PVTDDLEAV-E-TDPDVLIDF 75 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccCCCHHHhcCcCcCCc--eeeCCHHHh-c-CCCCEEEEC
Confidence 7999999 699999999999887 899999999953 3211 01112211 1344 478999999 3 359999999
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV 150 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i 150 (376)
|||..|.+++..|++ +|+||+|+|| +.+.+++++|.++| +++|+++++++|+-. .+..+.+++
T Consensus 76 T~p~~~~~~~~~al~--~g~~vVigtt-g~~~e~~~~l~~aA-~~~g~~v~~a~NfSl--Gv~ll~~~~ 138 (266)
T TIGR00036 76 TTPEGVLNHLKFALE--HGVRLVVGTT-GFSEEDKQELADLA-EKAGIAAVIAPNFSI--GVNLMFKLL 138 (266)
T ss_pred CChHHHHHHHHHHHH--CCCCEEEECC-CCCHHHHHHHHHHH-hcCCccEEEECcccH--HHHHHHHHH
Confidence 999999999999999 9999999999 78999999999999 666888888766544 343333333
No 21
>PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases.
Probab=99.36 E-value=6.8e-12 Score=94.87 Aligned_cols=130 Identities=24% Similarity=0.373 Sum_probs=93.2
Q ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEeecc-CCcccccCccccccccCCcccccccccHHHHHHHHhCC-CCeEEEEecc
Q 017143 138 RYMPPVAKLIQIVKSGSIGQVKMVAIREHR-FPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGS-NPMRVMASGA 215 (376)
Q Consensus 138 r~~p~~~~~k~~i~~g~iG~i~~~~~~~~~-~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~-~~~~V~a~~~ 215 (376)
||.+.++++|++|++..+ ++..+..++.. +..... ..| +++..+||++.++++|..|+++||.|+ +..+|.+.+.
T Consensus 1 RYl~~vq~~K~ii~en~l-~vm~~~aRY~~ay~~~~K-~~W-W~ks~sgGpiVEQaTHfcDL~RYfgGeVdldtV~a~sv 77 (142)
T PF08635_consen 1 RYLKAVQKMKQIIKENNL-PVMATNARYNCAYEHIAK-PFW-WNKSKSGGPIVEQATHFCDLSRYFGGEVDLDTVQAHSV 77 (142)
T ss_pred CchHHHHHHHHHHHhcCC-ceEEEEeeeeeehhccCC-chh-hhhcccCCCeeeehhhHHHHHHHhcCceeeeeEEEEec
Confidence 899999999999987654 44545554322 222222 333 466889999999999999999999996 5677887765
Q ss_pred cccccCccc----cC----CCCCcccccEEEEEEecCCcEEEEEEEEeecCCCCceEEEEEec
Q 017143 216 VDVNHKDEM----YN----GKVPDIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGN 270 (376)
Q Consensus 216 ~~~~~~~~~----~~----~~~~~~~d~~~~~l~~~~G~~~~l~~~~~~~~~~~~~~~~i~Gt 270 (376)
......+.. ++ +....++....++.+|++|++++++......|..+.-+++|+++
T Consensus 78 e~~e~~g~LskipvdEs~Ip~e~RiPR~T~A~Wky~sGAVGsl~H~~~LqG~~y~telev~aD 140 (142)
T PF08635_consen 78 EWDEPPGKLSKIPVDESKIPPENRIPRATSATWKYKSGAVGSLTHALALQGTNYSTELEVYAD 140 (142)
T ss_pred cccCCCCcCCCCCcCcccCChhhcCcceeeeEEEeccCceehhhhhhhccccccceEEEEecc
Confidence 533322211 11 12234667899999999999999998887788888878888874
No 22
>PF02894 GFO_IDH_MocA_C: Oxidoreductase family, C-terminal alpha/beta domain; InterPro: IPR004104 Enzymes containing this domain utilise NADP or NAD, and are known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, C-terminal domain is almost always associated with the oxidoreductase, N-terminal domain (see IPR000683 from INTERPRO).; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3IP3_E 3DTY_B 3Q2I_A 2P2S_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A 3NT2_A 3NT4_A ....
Probab=99.30 E-value=1.3e-11 Score=96.15 Aligned_cols=101 Identities=27% Similarity=0.378 Sum_probs=70.9
Q ss_pred HHHHHcCCCCceEEEEEeeccCCc-ccccCccccccccCCcccccccccHHHHHHHHhCCCCeEEEEecccccccCcccc
Q 017143 147 IQIVKSGSIGQVKMVAIREHRFPF-LVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMY 225 (376)
Q Consensus 147 k~~i~~g~iG~i~~~~~~~~~~~~-~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~~~~~V~a~~~~~~~~~~~~~ 225 (376)
|++|++|.||+|+.+++.+..... ......|+.....+||.++|+|+|.+|+++||+|.++..+.+.......
T Consensus 1 KelI~~g~iG~v~~v~~~~~~~~~~~~~~~~~~~~~~~~gG~l~d~g~H~id~~~~l~G~~~~~~~~~~~~~~~------ 74 (115)
T PF02894_consen 1 KELIEEGEIGKVRSVQGEFRFYRAPRPPRWRWRRDPEAGGGALLDLGIHQIDLVRWLFGSPPTVVAAAGGQRQL------ 74 (115)
T ss_dssp HHHHHTTTTSSEEEEEEEEEEEEBHTHHHHSGGGSHHTTTSHHHHTHHHHHHHHHHHHTSEEEEEEEEEESESS------
T ss_pred ChhhcCCCCCCEEEEEEeeecccccCCccccccccccCCceEEEeehhHHHHHHHHHhCCCcEEEEEEEecccc------
Confidence 789999999999999863322211 1112233333357899999999999999999999777777766432111
Q ss_pred CCCCCcccccE--EEEEEecCCcEEEEEEEE
Q 017143 226 NGKVPDIIDNA--YVIVEFENGSRGMLDLCM 254 (376)
Q Consensus 226 ~~~~~~~~d~~--~~~l~~~~G~~~~l~~~~ 254 (376)
....+.+|.. .+.+++.+|..+++.+++
T Consensus 75 -~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 104 (115)
T PF02894_consen 75 -PEAQEDEDAADRFANFEFGSGAVATLTASF 104 (115)
T ss_dssp -TTTTSSESEEEEEEEEEETTEEEEEEEEES
T ss_pred -CCCCCccccceEEEEEEeCCEEEEEEEEcc
Confidence 1122566777 899999999999887654
No 23
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=99.24 E-value=8.2e-12 Score=108.41 Aligned_cols=103 Identities=14% Similarity=0.199 Sum_probs=81.5
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
.+.+|+|||+|.+|..++..+.. ...++++++++|.++++ ..... .++++..++++++++.+.++|.|+||+|+
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~-~~~g~~ivgv~D~d~~~---~~~~i--~g~~v~~~~~l~~li~~~~iD~ViIa~P~ 156 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGF-EKRGFKIVAAFDVDPEK---IGTKI--GGIPVYHIDELEEVVKENDIEIGILTVPA 156 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhc-ccCCcEEEEEEECChhh---cCCEe--CCeEEcCHHHHHHHHHHCCCCEEEEeCCc
Confidence 46899999999999987765332 23689999999998763 22111 13333355788999988889999999999
Q ss_pred CccHHHHHHHHcCCCC-CeEEEecCCCCCHHH
Q 017143 85 MTHYQILMDIINHPKP-HHVLVEKPLCTTVAD 115 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g-~~Vl~EKP~a~~~~e 115 (376)
..|.+++..+++ +| ++|+|+||++.++.+
T Consensus 157 ~~~~~i~~~l~~--~Gi~~il~~~p~~~~v~~ 186 (213)
T PRK05472 157 EAAQEVADRLVE--AGIKGILNFAPVRLSVPE 186 (213)
T ss_pred hhHHHHHHHHHH--cCCCEEeecCceeecCCC
Confidence 999999999999 77 799999999998763
No 24
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=99.14 E-value=8.1e-10 Score=92.58 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=108.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
++|+|||||.||+..+..+...+ .+++++++||++.+ +++++.+.++.. ..+++++++++ +|+|+=|..+..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~~~e---k~~~~~~~~~~~--~~s~ide~~~~--~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDRDEE---KAKELEASVGRR--CVSDIDELIAE--VDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecCCHH---HHHHHHhhcCCC--ccccHHHHhhc--cceeeeeCCHHH
Confidence 58999999999999888777654 68999999999998 788888777754 45999999954 999999999999
Q ss_pred cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143 87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR 164 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~ 164 (376)
-.+++.++|+ +|++|++=-=.|+.-++..+......+.++..+++-. ...=.-..+.+-..|.|..+...
T Consensus 73 v~e~~~~~L~--~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pS------GAiGGlD~l~aar~g~i~~V~lt 142 (255)
T COG1712 73 VREYVPKILK--AGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPS------GAIGGLDALAAARVGGIEEVVLT 142 (255)
T ss_pred HHHHhHHHHh--cCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecC------ccchhHHHHHHhhcCCeeEEEEE
Confidence 9999999999 9999999888888766666655444366666655432 22222334444456777777663
No 25
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.09 E-value=7.3e-10 Score=102.76 Aligned_cols=95 Identities=18% Similarity=0.215 Sum_probs=78.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC----------------CCccCCHHHH
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP----------------LKVFPGHQEL 69 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 69 (376)
|+||||+|+|.||+.++..+... ++++|++++|++++ ....+++++|++ +.++++++++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d~~~~---~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAKTKPD---YEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC--CCcEEEEEECCChH---HHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 58999999999999999998887 89999999998765 445555544432 1245678888
Q ss_pred hhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143 70 LDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL 109 (376)
Q Consensus 70 l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~ 109 (376)
+.. +|+|+.|||+..|.+.+..+++ +|+.|+.--|.
T Consensus 76 ~~~--vDVVIdaT~~~~~~e~a~~~~~--aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEK--ADIVVDATPGGVGAKNKELYEK--AGVKAIFQGGE 111 (341)
T ss_pred hcc--CCEEEECCCchhhHHHHHHHHH--CCCEEEEcCCC
Confidence 854 9999999999999999999999 88999997774
No 26
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=99.04 E-value=3.8e-09 Score=92.44 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=108.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
++||||||+|.+|+.....+.....+++++++|++++++ ++++++.+ . ..++|+++|+.. ++|+|+=|..+.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~---~~~~~~~~--~--~~~~~l~~ll~~-~~DlVVE~A~~~ 73 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAAD---LPPALAGR--V--ALLDGLPGLLAW-RPDLVVEAAGQQ 73 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHH---HHHHhhcc--C--cccCCHHHHhhc-CCCEEEECCCHH
Confidence 489999999999998888776643357999999999886 56666654 3 488999999765 499999999999
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCC-CHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEEEEe
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCT-TVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR 164 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~-~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~~ 164 (376)
.=.+++.++|+ +|+++++=-+.|+ +.+-.++|.++| ++++..+++-.---. --..|+....|.+..+.++
T Consensus 74 av~e~~~~iL~--~g~dlvv~SvGALaD~~~~~~l~~~A-~~~g~~i~ipSGAig------GlD~l~aa~~~~~~~v~~~ 144 (267)
T PRK13301 74 AIAEHAEGCLT--AGLDMIICSAGALADDALRARLIAAA-EAGGARIRVPAGAIA------GLDYLQAVAGRDDAEVVYE 144 (267)
T ss_pred HHHHHHHHHHh--cCCCEEEEChhHhcCHHHHHHHHHHH-HhCCCEEEEeChHHH------hHHHHHHhhccCceEEEEE
Confidence 99999999999 9999999999887 566667788888 556777777543322 2233433345666665553
No 27
>PRK08618 ornithine cyclodeaminase; Validated
Probab=99.04 E-value=5.3e-10 Score=103.40 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=92.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH----hcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN----AFDWPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
.-+++|||+|.+|+.|+..+... .+++.+.|+++++++ ++++++ ++++++..++++++++.+ .|+|+.|
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~--~~~~~v~v~~r~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~--aDiVi~a 199 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAV--RDIERVRVYSRTFEK---AYAFAQEIQSKFNTEIYVVNSADEAIEE--ADIIVTV 199 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc--CCccEEEEECCCHHH---HHHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEc
Confidence 46899999999999999888776 688999999999984 444444 456654568999999965 8999999
Q ss_pred CCCCccHHHHHHHHcCCCCCeE---------EEecCCCCCHHHHHHHH-----HHHHhCCCeEEEEeeccccCHH
Q 017143 82 TPNMTHYQILMDIINHPKPHHV---------LVEKPLCTTVADCKKVV-----DAARKRPDILVQVGLEYRYMPP 142 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~V---------l~EKP~a~~~~e~~~l~-----~~a~~~~~~~~~v~~~~r~~p~ 142 (376)
||.. |..+. .+++ .|+|| ..|+|. .....++.++ +.+ ++.|.........++.+.
T Consensus 200 T~s~-~p~i~-~~l~--~G~hV~~iGs~~p~~~E~~~-~~~~~a~~vvvD~~~~~~-~e~G~~~~~~~~~~~~~~ 268 (325)
T PRK08618 200 TNAK-TPVFS-EKLK--KGVHINAVGSFMPDMQELPS-EAIARANKVVVESKEAAL-EETGDLIVPLKEGLISKD 268 (325)
T ss_pred cCCC-CcchH-HhcC--CCcEEEecCCCCcccccCCH-HHHhhCCEEEECCHHHHH-HhcCCcccHHHcCCCChh
Confidence 9866 88777 9999 99999 689997 3444554433 444 334555555555666554
No 28
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.96 E-value=2.8e-08 Score=88.49 Aligned_cols=148 Identities=14% Similarity=0.192 Sum_probs=95.6
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t 82 (376)
|+++||+|||+|.+|..++..+.+.....++.+.++++ +++ +++++++++++. .++++++++++ .|+|++++
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~--~DiViiav 74 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVE---KLDQLQARYNVS--TTTDWKQHVTS--VDTIVLAM 74 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHH---HHHHHHHHcCcE--EeCChHHHHhc--CCEEEEec
Confidence 44689999999999999988887652124553334555 455 567777778864 77899999875 89999999
Q ss_pred CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHH------------HHhCCCeEEEEeeccccCH-HHHHHHHH
Q 017143 83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA------------ARKRPDILVQVGLEYRYMP-PVAKLIQI 149 (376)
Q Consensus 83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~------------a~~~~~~~~~v~~~~r~~p-~~~~~k~~ 149 (376)
|++.|.+++.+....-.++ +++--..+.+.+..++.... +.-..+....+ +....++ ....++++
T Consensus 75 p~~~~~~v~~~l~~~~~~~-~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~-~~~~~~~~~~~~v~~l 152 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQ-LVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYT-MGQSVNETHKETLQLI 152 (245)
T ss_pred CHHHHHHHHHHHHhhccCC-EEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEe-eCCCCCHHHHHHHHHH
Confidence 9999999887653211233 55555666777776665421 00111333332 2223333 34667777
Q ss_pred HHcCCCCceEEEE
Q 017143 150 VKSGSIGQVKMVA 162 (376)
Q Consensus 150 i~~g~iG~i~~~~ 162 (376)
++ .+|.+..+.
T Consensus 153 f~--~~G~~~~~~ 163 (245)
T PRK07634 153 LK--GIGTSQLCT 163 (245)
T ss_pred HH--hCCCEEEEC
Confidence 76 488887653
No 29
>PRK08374 homoserine dehydrogenase; Provisional
Probab=98.92 E-value=1.3e-08 Score=94.24 Aligned_cols=148 Identities=19% Similarity=0.215 Sum_probs=103.4
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhc-------CCCcEEEEEeCCChhh-------HHHHHHHHHhcCCCCCcc--------
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLR-------SQGVSVVCIADPHLQS-------RQQALKLANAFDWPLKVF-------- 63 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~-------~~~~~~~~v~d~~~~~-------~~~~~~~~~~~~~~~~~~-------- 63 (376)
+++|+|+|+|.+|...+..+.+.. +-+++|++|+|++... .+++.+..++.+.. ..|
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~-~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKL-SNWGNDYEVYN 80 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCch-hhccccccccC
Confidence 599999999999997666655421 1358999999865221 12334444444321 112
Q ss_pred CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEE-Eec-CCCCCHHHHHHHHHHHHhCCCeEEEEee-ccccC
Q 017143 64 PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVL-VEK-PLCTTVADCKKVVDAARKRPDILVQVGL-EYRYM 140 (376)
Q Consensus 64 ~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl-~EK-P~a~~~~e~~~l~~~a~~~~~~~~~v~~-~~r~~ 140 (376)
-++++++.+.++|+|+-+|++..+.++..++++ +|+||. ..| |++...+ +|.+++++ +++.+.... ..---
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~--~G~~VVtanK~~la~~~~---el~~la~~-~~~~~~~ea~v~~Gi 154 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALK--EGKSVVTSNKPPIAFHYD---ELLDLANE-RNLPYLFEATVMAGT 154 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHh--hCCcEEECCHHHHHhCHH---HHHHHHHH-cCCeEEEeccccccC
Confidence 178899987779999999999999999999999 999998 788 8885555 56677744 466665444 33357
Q ss_pred HHHHHHHHHHHcCCCCceEEEEE
Q 017143 141 PPVAKLIQIVKSGSIGQVKMVAI 163 (376)
Q Consensus 141 p~~~~~k~~i~~g~iG~i~~~~~ 163 (376)
|.+..+++.+... +|..++.
T Consensus 155 Pii~~l~~~l~g~---~i~~i~G 174 (336)
T PRK08374 155 PIIGLLRENLLGD---TVKRIEA 174 (336)
T ss_pred CchHHHHhhcccc---ceEEEEE
Confidence 8999999988543 4555544
No 30
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.90 E-value=4.2e-09 Score=98.02 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=69.8
Q ss_pred ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CC---CCccCCHHHHhhCCCCCEEEE
Q 017143 6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WP---LKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~l~~~~~D~V~i 80 (376)
|+||+|||+ |.+|+.|+..+.++ +++++++++++... .+.+++.++ +. ...|++++++. ..++|+|++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~----g~~l~~~~~~~~~~~~~~~~~~~~~~-~~~vD~Vf~ 74 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSA----GKPLSDVHPHLRGLVDLVLEPLDPEI-LAGADVVFL 74 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECcccc----CcchHHhCcccccccCceeecCCHHH-hcCCCEEEE
Confidence 489999996 99999999999988 89999999985432 223333322 11 12466666653 345999999
Q ss_pred eCCCCccHHHHHHHHcCCCCCeEEE
Q 017143 81 STPNMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
|+|+..|.+++.++++ +|+||+-
T Consensus 75 alP~~~~~~~v~~a~~--aG~~VID 97 (343)
T PRK00436 75 ALPHGVSMDLAPQLLE--AGVKVID 97 (343)
T ss_pred CCCcHHHHHHHHHHHh--CCCEEEE
Confidence 9999999999999999 8898875
No 31
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.87 E-value=7.4e-09 Score=81.72 Aligned_cols=120 Identities=22% Similarity=0.238 Sum_probs=86.6
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH--HHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ--QALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
|||+|+|+ |.||+..+..+.+. ++++|++++++.++... ...++.......+..+++++++++. +|+|+-+|.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~--~DVvIDfT~ 76 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE--ADVVIDFTN 76 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH---SEEEEES-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--CCEEEEcCC
Confidence 79999999 99999999999887 89999999999872110 0112221111224588999999998 999999998
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE 136 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~ 136 (376)
+..-.+.+..|++ +|+++.+=--. .+.++.++|.+++ ++ +++....|
T Consensus 77 p~~~~~~~~~~~~--~g~~~ViGTTG-~~~~~~~~l~~~a-~~--~~vl~a~N 123 (124)
T PF01113_consen 77 PDAVYDNLEYALK--HGVPLVIGTTG-FSDEQIDELEELA-KK--IPVLIAPN 123 (124)
T ss_dssp HHHHHHHHHHHHH--HT-EEEEE-SS-SHHHHHHHHHHHT-TT--SEEEE-SS
T ss_pred hHHhHHHHHHHHh--CCCCEEEECCC-CCHHHHHHHHHHh-cc--CCEEEeCC
Confidence 8888899999999 88999885553 4778888888888 44 55655544
No 32
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.80 E-value=3.6e-08 Score=74.15 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=68.3
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-CHHHHhhCCCCCEEEEeCCCCc
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-GHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
||||||+|.+|...+..+.+..-...++..+++++++ +++++++++++. .+. +.+++++. .|+|++|+||+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~---~~~~~~~~~~~~--~~~~~~~~~~~~--advvilav~p~~ 73 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE---KAAELAKEYGVQ--ATADDNEEAAQE--ADVVILAVKPQQ 73 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH---HHHHHHHHCTTE--EESEEHHHHHHH--TSEEEE-S-GGG
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH---HHHHHHHhhccc--cccCChHHhhcc--CCEEEEEECHHH
Confidence 7999999999999999887761123787777799998 677888888854 555 89999986 899999999999
Q ss_pred cHHHHHHH--HcCCCCCeEE
Q 017143 87 HYQILMDI--INHPKPHHVL 104 (376)
Q Consensus 87 h~~~~~~a--l~~~~g~~Vl 104 (376)
..+++.+. +. .++.|+
T Consensus 74 ~~~v~~~i~~~~--~~~~vi 91 (96)
T PF03807_consen 74 LPEVLSEIPHLL--KGKLVI 91 (96)
T ss_dssp HHHHHHHHHHHH--TTSEEE
T ss_pred HHHHHHHHhhcc--CCCEEE
Confidence 98888775 55 555554
No 33
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.78 E-value=8.3e-08 Score=82.86 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=118.3
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC--
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN-- 84 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~-- 84 (376)
-+|.|.|+- +|..++.+++.- .++++++++.....+ +..+++.+||+| .|.+.|++-.+ +|+..|....
T Consensus 5 ksVvV~Gtr-FGq~Ylaaf~~~-~~~~eLaGiLaqGSe---RSRaLAh~~GVp--ly~~~eelpd~--idiACVvVrsai 75 (361)
T COG4693 5 KSVVVCGTR-FGQFYLAAFAAA-PPRFELAGILAQGSE---RSRALAHRLGVP--LYCEVEELPDD--IDIACVVVRSAI 75 (361)
T ss_pred ceEEEecch-HHHHHHHHhccC-CCCceeehhhhcccH---HHHHHHHHhCCc--cccCHhhCCCC--CCeEEEEEeeee
Confidence 388888875 678888887665 389999999988777 678899999998 99999999887 6654444332
Q ss_pred --CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC-CCCceEEE
Q 017143 85 --MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG-SIGQVKMV 161 (376)
Q Consensus 85 --~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g-~iG~i~~~ 161 (376)
..=.++++..|+ +|+||+.|-|+ -++|..+|.++|+ +.|....||-.+-.-|+.++..+..+.- .--++..+
T Consensus 76 ~Gg~Gs~larall~--RGi~VlqEHPl--~p~di~~l~rlA~-rqG~~y~vNTfYPhlpA~rrfi~~~rql~~~~~p~~v 150 (361)
T COG4693 76 VGGQGSALARALLA--RGIHVLQEHPL--HPRDIQDLLRLAE-RQGRRYLVNTFYPHLPAVRRFIEYARQLHRRRGPRFV 150 (361)
T ss_pred ecCCcHHHHHHHHH--cccHHHHhCCC--CHHHHHHHHHHHH-HhCcEEEEeccCCCcHHHHHHHHHHHHHHHhcCCCeE
Confidence 355788888899 99999999997 5789999999995 4599999987666666665544433210 11234444
Q ss_pred EEeeccCCcccccCccccccccCCcccccccccHHHHHHHHhCC
Q 017143 162 AIREHRFPFLVKVNDWNRFNENTGGTLVEKCCHFFDLMRLFVGS 205 (376)
Q Consensus 162 ~~~~~~~~~~~~~~~w~~~~~~~gG~l~d~g~H~ld~~~~l~G~ 205 (376)
+..+. ..+++-.+|++..++|.
T Consensus 151 eat~g----------------------vQvlystLDil~~aLgg 172 (361)
T COG4693 151 EATCG----------------------VQVLYSTLDILARALGG 172 (361)
T ss_pred Eeecc----------------------hhhhHHHHHHHHHHhcC
Confidence 44321 12245568988888885
No 34
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=98.68 E-value=1.5e-07 Score=85.97 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=73.7
Q ss_pred EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC----------------CccCCHHHHhhC
Q 017143 9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL----------------KVFPGHQELLDS 72 (376)
Q Consensus 9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~~ 72 (376)
|||+|+|.||+.|++++... ++++|++|+|.+++ .+..++.+++++. ..+.++++++..
T Consensus 1 VaInG~GrIGr~varav~~~--~d~elVaVnD~~~~---~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTKTSPD---FEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--CCcEEEEEecCChH---HHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998876 89999999998887 4555555555431 125579999954
Q ss_pred CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143 73 GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL 109 (376)
Q Consensus 73 ~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~ 109 (376)
+|+|+.|||...|..-+...++.| -|.|++=-|.
T Consensus 76 --vDiVve~Tp~~~~~~na~~~~~~G-akaVl~~~p~ 109 (333)
T TIGR01546 76 --VDIVVDATPGGIGAKNKPLYEKAG-VKAIFQGGEK 109 (333)
T ss_pred --CCEEEECCCCCCChhhHHHHHhCC-cCEEEECCCC
Confidence 999999999999998888888854 3678886664
No 35
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.68 E-value=3e-08 Score=77.60 Aligned_cols=113 Identities=22% Similarity=0.245 Sum_probs=82.4
Q ss_pred eCChhhHHHHHHhhhhcCC-CcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHHH
Q 017143 13 GMGMMGREHFINLHHLRSQ-GVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQIL 91 (376)
Q Consensus 13 G~G~~g~~~~~~~~~~~~~-~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~ 91 (376)
|+|.+|+..+..+...+.. ++++++|++++ ...... ......+. ..+++++++++..++|+|+=||++..-.++.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~ 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD-WAASFPDE--AFTTDLEELIDDPDIDVVVECTSSEAVAEYY 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT-HHHHHTHS--CEESSHHHHHTHTT-SEEEE-SSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh-hhhhcccc--cccCCHHHHhcCcCCCEEEECCCchHHHHHH
Confidence 8999999999988877322 89999999998 110001 11111122 4789999999977799999999999889999
Q ss_pred HHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143 92 MDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILVQV 133 (376)
Q Consensus 92 ~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~v 133 (376)
.++|+ +|+||..- +|++ +....++|.++| +++|+.++.
T Consensus 77 ~~~L~--~G~~VVt~nk~ala-~~~~~~~L~~~A-~~~g~~~~~ 116 (117)
T PF03447_consen 77 EKALE--RGKHVVTANKGALA-DEALYEELREAA-RKNGVRIYY 116 (117)
T ss_dssp HHHHH--TTCEEEES-HHHHH-SHHHHHHHHHHH-HHHT-EEEE
T ss_pred HHHHH--CCCeEEEECHHHhh-hHHHHHHHHHHH-HHcCCEEEe
Confidence 99999 99999884 4666 889999999999 455777653
No 36
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.63 E-value=2.4e-07 Score=82.74 Aligned_cols=145 Identities=19% Similarity=0.303 Sum_probs=100.5
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH-------------------HhcCCCCCccC
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA-------------------NAFDWPLKVFP 64 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 64 (376)
.+++|||+||+|.+|...+.....+ ++++++++.|++.....++-..+ -+-|- +.+++
T Consensus 15 G~PiRVGlIGAG~mG~~ivtQi~~m--~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGK-i~vT~ 91 (438)
T COG4091 15 GKPIRVGLIGAGEMGTGIVTQIASM--PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGK-IAVTD 91 (438)
T ss_pred CCceEEEEecccccchHHHHHHhhc--CCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCc-EEEec
Confidence 4689999999999999999999998 99999999999887433322211 01111 23567
Q ss_pred CHHHHhhCCCCCEEEEeCCC-CccHHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccC
Q 017143 65 GHQELLDSGLCDVVVVSTPN-MTHYQILMDIINHPKPHHVLV---EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYM 140 (376)
Q Consensus 65 ~~~~~l~~~~~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~ 140 (376)
|.+.++..+.+|+|+-+|-. ..-.++++.|+. +|||+.+ |--++.- --|.+.+ ++.|+....+.----
T Consensus 92 D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~--h~KHlVMmNVEaDvtIG----p~Lk~~A-d~~GviyS~~~GDeP- 163 (438)
T COG4091 92 DAELIIANDLIDVIIDATGVPEVGAKIALEAIL--HGKHLVMMNVEADVTIG----PILKQQA-DAAGVIYSGGAGDEP- 163 (438)
T ss_pred chhhhhcCCcceEEEEcCCCcchhhHhHHHHHh--cCCeEEEEEeeeceeec----HHHHHHH-hhcCeEEeccCCCCc-
Confidence 89999999999999998874 577899999999 9999876 4333322 2366777 555877665543222
Q ss_pred HHHHHHHHHHHcCCCC-ceEEE
Q 017143 141 PPVAKLIQIVKSGSIG-QVKMV 161 (376)
Q Consensus 141 p~~~~~k~~i~~g~iG-~i~~~ 161 (376)
.....|-++.++ +| +|+++
T Consensus 164 ~~~mEL~efa~a--~G~evv~a 183 (438)
T COG4091 164 SSCMELYEFASA--LGFEVVSA 183 (438)
T ss_pred HHHHHHHHHHHh--cCCeEEec
Confidence 234455555553 66 45444
No 37
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.63 E-value=5.1e-07 Score=83.96 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=101.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH----hcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN----AFDWPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
|++|.|||+|.+|+..+..|++. .+.+|+ +.||+.++..++.+... -.-+++.-.+.+.++|++ .|+|+.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~--~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~--~d~VIn~ 75 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN--GDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKD--FDLVINA 75 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC--CCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhc--CCEEEEe
Confidence 47899999999999988888887 457766 78999884443333210 011122234567788887 5999999
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC-ceEE
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG-QVKM 160 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG-~i~~ 160 (376)
.|+..+..++..|++ .|+|++--- ...+...++.+.| +++|+..+.+ .=|+|.+..+--.-....+. +|.+
T Consensus 76 ~p~~~~~~i~ka~i~--~gv~yvDts---~~~~~~~~~~~~a-~~Agit~v~~--~G~dPGi~nv~a~~a~~~~~~~i~s 147 (389)
T COG1748 76 APPFVDLTILKACIK--TGVDYVDTS---YYEEPPWKLDEEA-KKAGITAVLG--CGFDPGITNVLAAYAAKELFDEIES 147 (389)
T ss_pred CCchhhHHHHHHHHH--hCCCEEEcc---cCCchhhhhhHHH-HHcCeEEEcc--cCcCcchHHHHHHHHHHHhhccccE
Confidence 999999999999999 899987511 1111137788888 5558665554 55788665544333333456 8888
Q ss_pred EEEeeccC
Q 017143 161 VAIREHRF 168 (376)
Q Consensus 161 ~~~~~~~~ 168 (376)
+.+.....
T Consensus 148 i~iy~g~~ 155 (389)
T COG1748 148 IDIYVGGL 155 (389)
T ss_pred EEEEEecC
Confidence 87765443
No 38
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.62 E-value=8.1e-07 Score=79.68 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=92.4
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
||+|||+|.+|...+..+.+.. .....+.+++++++ +++++++++ ++ ..+++.++++.+ .|+|++|+|++.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g-~~~~~i~v~~r~~~---~~~~l~~~~~~~--~~~~~~~~~~~~--aDvVilav~p~~ 73 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSP-ADVSEIIVSPRNAQ---IAARLAERFPKV--RIAKDNQAVVDR--SDVVFLAVRPQI 73 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCC-CChheEEEECCCHH---HHHHHHHHcCCc--eEeCCHHHHHHh--CCEEEEEeCHHH
Confidence 7999999999999998887651 23444678999887 566777776 34 477899999876 899999999754
Q ss_pred cHHHHHHH-HcCCCCCeEEEecCCCCCHHHHHHHHHHH------------HhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143 87 HYQILMDI-INHPKPHHVLVEKPLCTTVADCKKVVDAA------------RKRPDILVQVGLEYRYMPPVAKLIQIVKSG 153 (376)
Q Consensus 87 h~~~~~~a-l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a------------~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g 153 (376)
-.+++.+. ++ .|++|+... .+.+.++.+++.... ....++.. +.+....++++++
T Consensus 74 ~~~vl~~l~~~--~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~-------~~~~~~~~~~l~~-- 141 (258)
T PRK06476 74 AEEVLRALRFR--PGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTA-------IYPPDPFVAALFD-- 141 (258)
T ss_pred HHHHHHHhccC--CCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeE-------ecCCHHHHHHHHH--
Confidence 44444332 34 678888876 567888887776431 01223222 2344567888887
Q ss_pred CCCceEEE
Q 017143 154 SIGQVKMV 161 (376)
Q Consensus 154 ~iG~i~~~ 161 (376)
.+|....+
T Consensus 142 ~lG~~~~~ 149 (258)
T PRK06476 142 ALGTAVEC 149 (258)
T ss_pred hcCCcEEE
Confidence 58887664
No 39
>PRK06046 alanine dehydrogenase; Validated
Probab=98.62 E-value=1.4e-07 Score=87.24 Aligned_cols=92 Identities=23% Similarity=0.408 Sum_probs=70.3
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH-HHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL-KLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
...+++|||+|.+|+.|+..+... ++++.+.|+|+++++.++.. ++.+.+++++..+++++++++ .|+|++|||
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~--~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aTp 202 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV--FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTTP 202 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh--CCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEecC
Confidence 457999999999999999999887 78999999999998543322 222334554456899999984 899999999
Q ss_pred CCccHHHH-HHHHcCCCCCeEEE
Q 017143 84 NMTHYQIL-MDIINHPKPHHVLV 105 (376)
Q Consensus 84 ~~~h~~~~-~~al~~~~g~~Vl~ 105 (376)
+.. +++ .+.++ .|.||.+
T Consensus 203 s~~--P~~~~~~l~--~g~hV~~ 221 (326)
T PRK06046 203 SRK--PVVKAEWIK--EGTHINA 221 (326)
T ss_pred CCC--cEecHHHcC--CCCEEEe
Confidence 753 333 34578 8999985
No 40
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.61 E-value=5.9e-07 Score=74.62 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=82.8
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
|.||||||+|.+|......|.+. +++|. ++|++++ +++++.++ |. ...+|.+++.+. .|+|+++.|+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~---g~~v~-~~d~~~~---~~~~~~~~-g~--~~~~s~~e~~~~--~dvvi~~v~~~ 68 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA---GYEVT-VYDRSPE---KAEALAEA-GA--EVADSPAEAAEQ--ADVVILCVPDD 68 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT---TTEEE-EEESSHH---HHHHHHHT-TE--EEESSHHHHHHH--BSEEEE-SSSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc---CCeEE-eeccchh---hhhhhHHh-hh--hhhhhhhhHhhc--ccceEeecccc
Confidence 47999999999999999998774 88876 6899988 56666655 53 588999999998 79999999997
Q ss_pred ccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143 86 THYQILMDI---INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY 137 (376)
Q Consensus 86 ~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~ 137 (376)
...+-+... +..-..-.++++-- +.++++.+++.+.+.++ |+.+.-+...
T Consensus 69 ~~v~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~-g~~~vdapV~ 121 (163)
T PF03446_consen 69 DAVEAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAK-GVRYVDAPVS 121 (163)
T ss_dssp HHHHHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHT-TEEEEEEEEE
T ss_pred hhhhhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhc-cceeeeeeee
Confidence 765554442 22111235777655 57999999999999554 7666665544
No 41
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.55 E-value=2e-07 Score=73.44 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=60.2
Q ss_pred eEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CCCCccCCHH-HHhhCCCCCEEEEeCCC
Q 017143 8 KYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WPLKVFPGHQ-ELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 8 ~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~~D~V~i~t~~ 84 (376)
|++|||+ |.+|..+++.+... ++++++++++++.+ +.+.+...++ +.-..+++++ +.++..+.|+|++|+|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAASARS---AGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--CCceEEEEEechhh---cCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 6899995 88899999999988 89999999886543 2333333332 2101122332 33333468999999999
Q ss_pred CccHHHHH---HHHcCCCCCeEE
Q 017143 85 MTHYQILM---DIINHPKPHHVL 104 (376)
Q Consensus 85 ~~h~~~~~---~al~~~~g~~Vl 104 (376)
..|.+.+. .+++ .|+.|+
T Consensus 76 ~~~~~~~~~~~~~~~--~g~~vi 96 (122)
T smart00859 76 GVSKEIAPLLPKAAE--AGVKVI 96 (122)
T ss_pred HHHHHHHHHHHhhhc--CCCEEE
Confidence 99999644 4456 676554
No 42
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.52 E-value=1.4e-06 Score=78.95 Aligned_cols=147 Identities=19% Similarity=0.190 Sum_probs=101.9
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhcC-------CCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCH-----HHH
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLRS-------QGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGH-----QEL 69 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~-------~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~ 69 (376)
|+++||+|+|+|.+|...+..+++..+ -.+++++|.+++..... .+..+ ....++. .++
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 73 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-------DLDLLNAEVWTTDGALSLGDEV 73 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-------cccccchhhheecccccccHhh
Confidence 468999999999999988877766521 48999999999876321 11111 1233445 677
Q ss_pred hhCCCCCEEEEeCCC-----CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHH
Q 017143 70 LDSGLCDVVVVSTPN-----MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVA 144 (376)
Q Consensus 70 l~~~~~D~V~i~t~~-----~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~ 144 (376)
+.+.++|+|+=+++. .. .++.++||+ +||||..---.. -.....+|.++|++.+....+-+-..=--|.+.
T Consensus 74 ~~~~~~dvvve~~~~d~~~~~~-~~~~~~al~--~GkhVVTaNK~~-lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~ 149 (333)
T COG0460 74 LLDEDIDVVVELVGGDVEPAEP-ADLYLKALE--NGKHVVTANKAL-LALHYHELREAAEKNGVKLLYEATVGGGIPIIK 149 (333)
T ss_pred hccccCCEEEecCcccCCchhh-HHHHHHHHH--cCCeEECCCchH-hHhhHHHHHHHHHHhCCeEEEEeeeccCcchHH
Confidence 777889988866654 33 689999999 999998753221 233488899999554334455555666689999
Q ss_pred HHHHHHHcCCCCceEEE
Q 017143 145 KLIQIVKSGSIGQVKMV 161 (376)
Q Consensus 145 ~~k~~i~~g~iG~i~~~ 161 (376)
.+|+.+...+|-+|..|
T Consensus 150 ~lr~~l~g~~I~~i~GI 166 (333)
T COG0460 150 LLRELLAGDEILSIRGI 166 (333)
T ss_pred HHHhhcccCceEEEEEE
Confidence 99999985555555544
No 43
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.51 E-value=3.3e-07 Score=85.47 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=67.6
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CC---CCccC--CHHHHhhCCCCCEEE
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WP---LKVFP--GHQELLDSGLCDVVV 79 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~---~~~~~--~~~~~l~~~~~D~V~ 79 (376)
+||+|||+ |.+|..+++.|.++ |.++++++++.+.. ..+.+...++ +. ...++ +.++++. ++|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~s---agk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRES---AGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccchh---cCCChHHhCccccccCCceeecCCHHHhhc--CCCEEE
Confidence 58999997 99999999999988 99999988765542 2223333332 11 01233 5566664 499999
Q ss_pred EeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143 80 VSTPNMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 80 i~t~~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
+|+|+..|.+++.++++ +|++|+-
T Consensus 74 ~alP~~~s~~~~~~~~~--~G~~VID 97 (346)
T TIGR01850 74 LALPHGVSAELAPELLA--AGVKVID 97 (346)
T ss_pred ECCCchHHHHHHHHHHh--CCCEEEe
Confidence 99999999999999999 8888874
No 44
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.47 E-value=6.1e-06 Score=74.87 Aligned_cols=146 Identities=10% Similarity=0.157 Sum_probs=90.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
.+||+|||+|.||...+..+.+.. -+..+ +.++++++++ ++++++.++|+. .+++..++++. .|+|++++|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~-v~v~~r~~~~--~~~~l~~~~g~~--~~~~~~e~~~~--aDvVilav~p 75 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQ-ITVSNRSNET--RLQELHQKYGVK--GTHNKKELLTD--ANILFLAMKP 75 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcce-EEEECCCCHH--HHHHHHHhcCce--EeCCHHHHHhc--CCEEEEEeCH
Confidence 469999999999999888887651 01134 4568887642 456777777854 67888888765 7999999999
Q ss_pred CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHH------------HHhCCCeEEEEeecccc-CHHHHHHHHHHH
Q 017143 85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA------------ARKRPDILVQVGLEYRY-MPPVAKLIQIVK 151 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~------------a~~~~~~~~~v~~~~r~-~p~~~~~k~~i~ 151 (376)
+.-.+.+......-...++++.==-+.+.+..+++... +....++.++++ .... ......++++++
T Consensus 76 ~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~-~~~~~~~~~~~v~~l~~ 154 (279)
T PRK07679 76 KDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP-SKHATAEHIQTAKALFE 154 (279)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee-CCCCCHHHHHHHHHHHH
Confidence 88777665543210123566664345577777665421 102223333332 1222 224566777777
Q ss_pred cCCCCceEEE
Q 017143 152 SGSIGQVKMV 161 (376)
Q Consensus 152 ~g~iG~i~~~ 161 (376)
. +|++..+
T Consensus 155 ~--~G~~~~v 162 (279)
T PRK07679 155 T--IGLVSVV 162 (279)
T ss_pred h--CCcEEEe
Confidence 4 7876544
No 45
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.47 E-value=4.5e-07 Score=71.21 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=60.4
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
.++||+|||+|..|......|.+. +..|++|++++.+ .+++.++..+- ..+.++++++.+ .|+++|++|+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a---g~~v~~v~srs~~---sa~~a~~~~~~--~~~~~~~~~~~~--aDlv~iavpD 78 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA---GHEVVGVYSRSPA---SAERAAAFIGA--GAILDLEEILRD--ADLVFIAVPD 78 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT---TSEEEEESSCHH----HHHHHHC--TT-------TTGGGCC---SEEEE-S-C
T ss_pred CccEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeCCcc---ccccccccccc--cccccccccccc--CCEEEEEech
Confidence 479999999999999988888875 8999999999887 44455555442 355677788876 8999999999
Q ss_pred CccHHHHHHHHcCC---CCCeEEEecCCCCCHHH
Q 017143 85 MTHYQILMDIINHP---KPHHVLVEKPLCTTVAD 115 (376)
Q Consensus 85 ~~h~~~~~~al~~~---~g~~Vl~EKP~a~~~~e 115 (376)
+.=.+++.+....+ .| .+++=--.+.+.+-
T Consensus 79 daI~~va~~La~~~~~~~g-~iVvHtSGa~~~~v 111 (127)
T PF10727_consen 79 DAIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDV 111 (127)
T ss_dssp CHHHHHHHHHHCC--S-TT--EEEES-SS--GGG
T ss_pred HHHHHHHHHHHHhccCCCC-cEEEECCCCChHHh
Confidence 97666666655410 23 35555455554443
No 46
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.45 E-value=8.9e-07 Score=81.87 Aligned_cols=94 Identities=20% Similarity=0.375 Sum_probs=71.7
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
...++||||+|.+|+.|+.++... ..++-+.|+|+++++.+...+..+++++++..+++.++++++ .|+|+.|||.
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~--aDiVitaT~s 202 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEG--CDILVTTTPS 202 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhcc--CCEEEEecCC
Confidence 457899999999999999999887 578889999999995443333223567554568999999975 8999999986
Q ss_pred CccHHHH-HHHHcCCCCCeEEEe
Q 017143 85 MTHYQIL-MDIINHPKPHHVLVE 106 (376)
Q Consensus 85 ~~h~~~~-~~al~~~~g~~Vl~E 106 (376)
.. +++ .+.++ .|.||.+=
T Consensus 203 ~~--P~~~~~~l~--~g~~v~~v 221 (325)
T TIGR02371 203 RK--PVVKADWVS--EGTHINAI 221 (325)
T ss_pred CC--cEecHHHcC--CCCEEEec
Confidence 43 333 34578 89998763
No 47
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.41 E-value=2.8e-07 Score=72.44 Aligned_cols=87 Identities=22% Similarity=0.346 Sum_probs=64.2
Q ss_pred eEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC----CC-CCccC-CHHHHhhCCCCCEEEE
Q 017143 8 KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD----WP-LKVFP-GHQELLDSGLCDVVVV 80 (376)
Q Consensus 8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~~-~~~~~-~~~~~l~~~~~D~V~i 80 (376)
||+||| +|.+|...+..|.++ |.++++.+++++.+ ..+.+...++ +. ...-+ +.+++ .++|+|+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Dvvf~ 72 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRS---AGKPLSEVFPHPKGFEDLSVEDADPEEL---SDVDVVFL 72 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTT---TTSBHHHTTGGGTTTEEEBEEETSGHHH---TTESEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccc---cCCeeehhccccccccceeEeecchhHh---hcCCEEEe
Confidence 799999 899999999999998 99999999998873 2333443332 11 11112 23333 34999999
Q ss_pred eCCCCccHHHHHHHHcCCCCCeEE
Q 017143 81 STPNMTHYQILMDIINHPKPHHVL 104 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~Vl 104 (376)
|+|+..+.+++.++++ +|..|+
T Consensus 73 a~~~~~~~~~~~~~~~--~g~~Vi 94 (121)
T PF01118_consen 73 ALPHGASKELAPKLLK--AGIKVI 94 (121)
T ss_dssp -SCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCchhHHHHHHHHHhh--CCcEEE
Confidence 9999999999999999 887554
No 48
>PRK06392 homoserine dehydrogenase; Provisional
Probab=98.38 E-value=1e-05 Score=74.36 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=94.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhh-----cCCCcEEEEEeCCChhh-------HHHHHHHHHhcCCCCCccC--CHHHHhhC
Q 017143 7 VKYGIIGMGMMGREHFINLHHL-----RSQGVSVVCIADPHLQS-------RQQALKLANAFDWPLKVFP--GHQELLDS 72 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~-----~~~~~~~~~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 72 (376)
+||+|||+|.+|+..+..+.+. ...+++|++|+|++... .+...+..++-.+....++ ++++++.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~- 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE- 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc-
Confidence 4899999999999887776553 12579999999976421 1122222222011101123 6788876
Q ss_pred CCCCEEEEeCCCCc----cHHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEEEE-eeccccCHHHHH
Q 017143 73 GLCDVVVVSTPNMT----HYQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILVQV-GLEYRYMPPVAK 145 (376)
Q Consensus 73 ~~~D~V~i~t~~~~----h~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~v-~~~~r~~p~~~~ 145 (376)
.++|+|+=|||... ...+..+||+ +|+||..- .|++ ....+|.++|++ +++.+.. +-..---|....
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~--~G~hVVTaNKgalA---~~~~eL~~lA~~-~g~~~~~eatV~~g~Pii~~ 153 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFE--HGIDVVTANKSGLA---NHWHDIMDSASK-NRRIIRYEATVAGGVPLFSL 153 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHH--CCCEEEcCCHHHHH---hhHHHHHHHHHH-cCCeEEEeeeeeeccchhhh
Confidence 47999999998532 4677799999 99999875 3444 556888889954 4655553 334445788887
Q ss_pred HHHHHHcCCCCceEEEEE
Q 017143 146 LIQIVKSGSIGQVKMVAI 163 (376)
Q Consensus 146 ~k~~i~~g~iG~i~~~~~ 163 (376)
++..+... +|..++.
T Consensus 154 ~~~~~~g~---~i~~i~G 168 (326)
T PRK06392 154 RDYSTLPS---RIKNFRG 168 (326)
T ss_pred hhhhcccC---CEEEEEE
Confidence 75544433 5666655
No 49
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.36 E-value=7.8e-06 Score=74.94 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=78.6
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCC-CCCEEEEeCCCCc
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSG-LCDVVVVSTPNMT 86 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~D~V~i~t~~~~ 86 (376)
||||||+|.||..+...+.+. +++|+ ++|++++ +++++. +.|. ..+++.+++++.. ..|+|++++|+..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~---g~~v~-v~dr~~~---~~~~~~-~~g~--~~~~s~~~~~~~~~~advVi~~vp~~~ 71 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED---GHEVV-GYDVNQE---AVDVAG-KLGI--TARHSLEELVSKLEAPRTIWVMVPAGE 71 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC---CCEEE-EEECCHH---HHHHHH-HCCC--eecCCHHHHHHhCCCCCEEEEEecCch
Confidence 799999999999998888774 77877 7999987 444443 4564 4788999998753 3799999999997
Q ss_pred cHHHHHHHHcC-C-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143 87 HYQILMDIINH-P-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILV 131 (376)
Q Consensus 87 h~~~~~~al~~-~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 131 (376)
+.+-+..-+.. - .| .++++-- +.++.+.+++.+.+.+ .++.+
T Consensus 72 ~~~~v~~~i~~~l~~g-~ivid~s-t~~~~~~~~~~~~~~~-~g~~~ 115 (299)
T PRK12490 72 VTESVIKDLYPLLSPG-DIVVDGG-NSRYKDDLRRAEELAE-RGIHY 115 (299)
T ss_pred HHHHHHHHHhccCCCC-CEEEECC-CCCchhHHHHHHHHHH-cCCeE
Confidence 76554433221 0 33 5777653 4567788888888744 36544
No 50
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=98.35 E-value=2e-06 Score=78.94 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=72.7
Q ss_pred eEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCC---------------------CCcc--
Q 017143 8 KYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWP---------------------LKVF-- 63 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---------------------~~~~-- 63 (376)
||||+|+|.+|+.+++.+.... .+++++++|.|.... +.....-+|+.. ++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~---~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 77 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQ---ASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHS 77 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCH---HHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEc
Confidence 6999999999999999987652 257999999997654 222233333310 1111
Q ss_pred CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCC
Q 017143 64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTT 112 (376)
Q Consensus 64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~ 112 (376)
.+.+++-. +.++|+|+.||+...+.+.+.+++++| .+.|++.+|+..+
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aG-a~~V~~SaP~~~d 126 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAG-AKRVLFSHPGASD 126 (325)
T ss_pred CChhhccccccCCCEEEEccchhccHHHHHHHHHcC-CeEEEecCCCcCC
Confidence 24444433 247999999999999999999999943 3999999997643
No 51
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=98.35 E-value=9.7e-06 Score=72.52 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=90.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
.|||+||+|.||......|.+. ++++. ++|++++ ++.++....|.. .+.+..++.+. .|+|+.+.|+..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a---G~~v~-v~~r~~~---ka~~~~~~~Ga~--~a~s~~eaa~~--aDvVitmv~~~~ 69 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA---GHEVT-VYNRTPE---KAAELLAAAGAT--VAASPAEAAAE--ADVVITMLPDDA 69 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC---CCEEE-EEeCChh---hhhHHHHHcCCc--ccCCHHHHHHh--CCEEEEecCCHH
Confidence 4899999999999998888884 78865 8999998 556677777854 88899899887 899999999999
Q ss_pred cHHHHHHH----HcC-CCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc
Q 017143 87 HYQILMDI----INH-PKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY 139 (376)
Q Consensus 87 h~~~~~~a----l~~-~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~ 139 (376)
|...+... ++. +.| -++++-- +.+++.++++.+.++ ..|+.+.-+....-
T Consensus 70 ~V~~V~~g~~g~~~~~~~G-~i~IDmS-Tisp~~a~~~a~~~~-~~G~~~lDAPVsGg 124 (286)
T COG2084 70 AVRAVLFGENGLLEGLKPG-AIVIDMS-TISPETARELAAALA-AKGLEFLDAPVSGG 124 (286)
T ss_pred HHHHHHhCccchhhcCCCC-CEEEECC-CCCHHHHHHHHHHHH-hcCCcEEecCccCC
Confidence 98877742 210 023 4666654 679999999999994 44766665554443
No 52
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.33 E-value=1.1e-05 Score=74.02 Aligned_cols=110 Identities=21% Similarity=0.347 Sum_probs=78.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
+||+|||+|.+|..+...+.+. +.+|+ ++|+++++ .+++. +.+. ..++++++++++ .|+|++++|+..
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~---g~~v~-~~d~~~~~---~~~~~-~~g~--~~~~~~~e~~~~--~d~vi~~vp~~~ 70 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA---GYSLV-VYDRNPEA---VAEVI-AAGA--ETASTAKAVAEQ--CDVIITMLPNSP 70 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC---CCeEE-EEcCCHHH---HHHHH-HCCC--eecCCHHHHHhc--CCEEEEeCCCHH
Confidence 5899999999999988888774 77876 68998874 33433 3454 367889999876 899999999988
Q ss_pred cHHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143 87 HYQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV 133 (376)
Q Consensus 87 h~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v 133 (376)
|...+. ..++ .|+ ++++-- +.++..+++|.+.+.+ .++.+.-
T Consensus 71 ~~~~v~~~~~~~~~~~~--~g~-iiid~s-t~~~~~~~~l~~~~~~-~g~~~~d 119 (296)
T PRK11559 71 HVKEVALGENGIIEGAK--PGT-VVIDMS-SIAPLASREIAAALKA-KGIEMLD 119 (296)
T ss_pred HHHHHHcCcchHhhcCC--CCc-EEEECC-CCCHHHHHHHHHHHHH-cCCcEEE
Confidence 766553 2334 443 455543 4567888888888844 3554433
No 53
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.33 E-value=5.2e-06 Score=74.90 Aligned_cols=100 Identities=21% Similarity=0.225 Sum_probs=70.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
++||+|||+|.+|..++..+.+.. .....+.+++++++ .++++..++|+. .+++.++++.+ .|+|++|+|+.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g-~~~~~v~v~~r~~~---~~~~~~~~~g~~--~~~~~~~~~~~--advVil~v~~~ 73 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASG-VPAKDIIVSDPSPE---KRAALAEEYGVR--AATDNQEAAQE--ADVVVLAVKPQ 73 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCC-CCcceEEEEcCCHH---HHHHHHHhcCCe--ecCChHHHHhc--CCEEEEEcCHH
Confidence 468999999999999988887651 12234568899887 456666667764 67888888765 89999999999
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCTTVAD 115 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e 115 (376)
.+.+++.++... .++.|+.--. +.+.++
T Consensus 74 ~~~~v~~~l~~~-~~~~vvs~~~-gi~~~~ 101 (267)
T PRK11880 74 VMEEVLSELKGQ-LDKLVVSIAA-GVTLAR 101 (267)
T ss_pred HHHHHHHHHHhh-cCCEEEEecC-CCCHHH
Confidence 888887776552 1344444333 334443
No 54
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.32 E-value=1.7e-06 Score=80.33 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=77.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH----hcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN----AFDWPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
..+++|||+|.+|+.|+.++... .+++-+.|++|+++ +++++++ ++++++..++++++++.+ .|+|+.+
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~--~~~~~V~v~~R~~~---~a~~l~~~~~~~~g~~v~~~~d~~~al~~--aDiVi~a 204 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLV--RPIREVRVWARDAA---KAEAYAADLRAELGIPVTVARDVHEAVAG--ADIIVTT 204 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEcCCHH---HHHHHHHHHhhccCceEEEeCCHHHHHcc--CCEEEEe
Confidence 36899999999999999998875 46888889999998 4555554 346654568999999976 7999999
Q ss_pred CCCCccHHHHHH-HHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143 82 TPNMTHYQILMD-IINHPKPHHVLVEKPLCTTVADCKKVVDAA 123 (376)
Q Consensus 82 t~~~~h~~~~~~-al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a 123 (376)
||... +++.. .++ .|.||.+ +..+....+++-...
T Consensus 205 T~s~~--p~i~~~~l~--~g~~v~~---vg~d~~~~rEld~~~ 240 (330)
T PRK08291 205 TPSEE--PILKAEWLH--PGLHVTA---MGSDAEHKNEIAPAV 240 (330)
T ss_pred eCCCC--cEecHHHcC--CCceEEe---eCCCCCCcccCCHHH
Confidence 98653 44433 478 8899987 656665556554444
No 55
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=98.32 E-value=5.8e-07 Score=67.45 Aligned_cols=90 Identities=17% Similarity=0.270 Sum_probs=69.4
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
++.+++|+|+|..|+..+....+. .++.+++++|.++++.. + .-.|+| +|++.+++.+..++|+.+|++|.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~--~g~~i~~~~dv~~~~~G--~---~i~gip--V~~~~~~l~~~~~i~iaii~VP~ 72 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSM--RGFGIVAVFDVDPEKIG--K---EIGGIP--VYGSMDELEEFIEIDIAIITVPA 72 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHH--HCECEEEEEEECTTTTT--S---EETTEE--EESSHHHHHHHCTTSEEEEES-H
T ss_pred CCCeEEEECCCCcHHHHHHhHHHH--cCCCCEEEEEcCCCccC--c---EECCEE--eeccHHHhhhhhCCCEEEEEcCH
Confidence 578999999999998766555555 69999999999998421 1 123665 89999999887569999999999
Q ss_pred CccHHHHHHHHcCCCCC-eEEE
Q 017143 85 MTHYQILMDIINHPKPH-HVLV 105 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~-~Vl~ 105 (376)
..-.+.+.++++ +|. .|++
T Consensus 73 ~~a~~~~~~~~~--~gIk~i~n 92 (96)
T PF02629_consen 73 EAAQEVADELVE--AGIKGIVN 92 (96)
T ss_dssp HHHHHHHHHHHH--TT-SEEEE
T ss_pred HHHHHHHHHHHH--cCCCEEEE
Confidence 999999999999 554 3443
No 56
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.31 E-value=1.2e-05 Score=74.13 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=77.5
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCC-cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQG-VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV 79 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~-~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~ 79 (376)
|+.+...+|+|||+|.+|......+... .. .+ +.++|+++++.+.+ .+.|+....+.+.+++++. .|+|+
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~--g~~~~-V~~~dr~~~~~~~a----~~~g~~~~~~~~~~~~~~~--aDvVi 71 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRL--GLAGE-IVGADRSAETRARA----RELGLGDRVTTSAAEAVKG--ADLVI 71 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhc--CCCcE-EEEEECCHHHHHHH----HhCCCCceecCCHHHHhcC--CCEEE
Confidence 7777667999999999999988888765 22 24 45789988743332 3455432345678887765 89999
Q ss_pred EeCCCCccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143 80 VSTPNMTHYQILMDI---INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY 137 (376)
Q Consensus 80 i~t~~~~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~ 137 (376)
+|+|+..+.+++.+. ++ .|. +++.- .+.+..-.+++.+.. .. ++.++.++..
T Consensus 72 iavp~~~~~~v~~~l~~~l~--~~~-iv~dv-gs~k~~~~~~~~~~~-~~-~~~~v~~hPm 126 (307)
T PRK07502 72 LCVPVGASGAVAAEIAPHLK--PGA-IVTDV-GSVKASVIAAMAPHL-PE-GVHFIPGHPL 126 (307)
T ss_pred ECCCHHHHHHHHHHHHhhCC--CCC-EEEeC-ccchHHHHHHHHHhC-CC-CCeEEeCCCC
Confidence 999998776665544 34 444 44442 233444444444443 22 5556655443
No 57
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.31 E-value=4.8e-06 Score=79.32 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=98.0
Q ss_pred EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc---CCC-----CCccCCHHHHhhCCCCCEEEE
Q 017143 9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF---DWP-----LKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~l~~~~~D~V~i 80 (376)
|.|+|+|.+|+..+..|.+. ..+.-+.|+|++.+ ++++++++. .+. +.-.++++++++. .|+|+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~--~~~~~v~va~r~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~--~dvVin 73 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR--GPFEEVTVADRNPE---KAERLAEKLLGDRVEAVQVDVNDPESLAELLRG--CDVVIN 73 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT--TCE-EEEEEESSHH---HHHHHHT--TTTTEEEEE--TTTHHHHHHHHTT--SSEEEE
T ss_pred CEEEcCcHHHHHHHHHHhcC--CCCCcEEEEECCHH---HHHHHHhhccccceeEEEEecCCHHHHHHHHhc--CCEEEE
Confidence 78999999999999988887 66634558999998 566666531 111 1112235667766 799999
Q ss_pred eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc--CCCCce
Q 017143 81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS--GSIGQV 158 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i 158 (376)
|.|+..+..++..|++ +|.|.+- .+.-.++..++-+.++ ++|+.+..+.-.---.....++.+++. +.++++
T Consensus 74 ~~gp~~~~~v~~~~i~--~g~~yvD---~~~~~~~~~~l~~~a~-~~g~~~l~~~G~~PGl~~~~a~~~~~~~~~~~~~v 147 (386)
T PF03435_consen 74 CAGPFFGEPVARACIE--AGVHYVD---TSYVTEEMLALDEEAK-EAGVTALPGCGFDPGLSNLLARYAADELDAEGDEV 147 (386)
T ss_dssp -SSGGGHHHHHHHHHH--HT-EEEE---SS-HHHHHHHCHHHHH-HTTSEEE-S-BTTTBHHHHHHHHHHHHHHHTTHEE
T ss_pred CCccchhHHHHHHHHH--hCCCeec---cchhHHHHHHHHHHHH-hhCCEEEeCcccccchHHHHHHHHHHHhhhhcccc
Confidence 9999999999999999 8899666 2223677888888884 458888888776666655556666542 245588
Q ss_pred EEEEEeecc
Q 017143 159 KMVAIREHR 167 (376)
Q Consensus 159 ~~~~~~~~~ 167 (376)
..+.++...
T Consensus 148 ~~~~~~~g~ 156 (386)
T PF03435_consen 148 ESVDIYVGG 156 (386)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEcc
Confidence 888865443
No 58
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.31 E-value=1.4e-05 Score=77.43 Aligned_cols=119 Identities=12% Similarity=0.191 Sum_probs=87.9
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cCCC-CCccCCHHHHhhC-CCC
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FDWP-LKVFPGHQELLDS-GLC 75 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~-~~~ 75 (376)
|.+..+.+||+||+|.||......|.+. +++|+ |+||+++ +++++.+. .|.. +..+++.+++.+. ..+
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~---G~~V~-V~NRt~~---k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~ 73 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEK---GFPIS-VYNRTTS---KVDETVERAKKEGNLPLYGFKDPEDFVLSIQKP 73 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhC---CCeEE-EECCCHH---HHHHHHHhhhhcCCcccccCCCHHHHHhcCCCC
Confidence 6666778999999999999999998875 88866 8999998 45555442 2421 2367899999975 358
Q ss_pred CEEEEeCCCCccHHHHH----HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143 76 DVVVVSTPNMTHYQILM----DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV 131 (376)
Q Consensus 76 D~V~i~t~~~~h~~~~~----~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 131 (376)
|+|+++.|+....+-+. ..++ .| .|+++-- +.+..+.+++.+.++++ |+.+
T Consensus 74 dvIi~~v~~~~aV~~Vi~gl~~~l~--~G-~iiID~s-T~~~~~t~~~~~~l~~~-Gi~f 128 (493)
T PLN02350 74 RSVIILVKAGAPVDQTIKALSEYME--PG-DCIIDGG-NEWYENTERRIKEAAEK-GLLY 128 (493)
T ss_pred CEEEEECCCcHHHHHHHHHHHhhcC--CC-CEEEECC-CCCHHHHHHHHHHHHHc-CCeE
Confidence 99999999998876664 3445 44 5788763 55789999998888444 5543
No 59
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=98.29 E-value=1.9e-05 Score=68.78 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=100.1
Q ss_pred ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--HHHHHHH--HhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143 6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSR--QQALKLA--NAFDWPLKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~D~V~i 80 (376)
+|||+|+|+ |.||+..++.+.+. ++++|++.+++.+... ..+.+++ ...+++ ++++..... .++|+++-
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~--v~~~~~~~~--~~~DV~ID 75 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVP--VTDDLLLVK--ADADVLID 75 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEecCCccccccchhhhccccccCce--eecchhhcc--cCCCEEEE
Confidence 699999997 99999999999888 8999999999987532 1122222 234554 667743333 45999999
Q ss_pred eCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH--cCCCC--
Q 017143 81 STPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK--SGSIG-- 156 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~--~g~iG-- 156 (376)
.|.|..-.+++..|++ +|+++.+=-- ..+.++.++|.+++ ++ +.+..+.| |+=.+..+.++++ +..++
T Consensus 76 FT~P~~~~~~l~~~~~--~~~~lVIGTT-Gf~~e~~~~l~~~a-~~--v~vv~a~N--fSiGvnll~~l~~~aak~l~~~ 147 (266)
T COG0289 76 FTTPEATLENLEFALE--HGKPLVIGTT-GFTEEQLEKLREAA-EK--VPVVIAPN--FSLGVNLLFKLAEQAAKVLDDY 147 (266)
T ss_pred CCCchhhHHHHHHHHH--cCCCeEEECC-CCCHHHHHHHHHHH-hh--CCEEEecc--chHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999 7776655443 45889999999999 54 44444433 4444444444442 33567
Q ss_pred ceEEEEE
Q 017143 157 QVKMVAI 163 (376)
Q Consensus 157 ~i~~~~~ 163 (376)
+|--++.
T Consensus 148 DiEIiE~ 154 (266)
T COG0289 148 DIEIIEA 154 (266)
T ss_pred CEEehhh
Confidence 5555555
No 60
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.29 E-value=4.4e-06 Score=68.68 Aligned_cols=121 Identities=21% Similarity=0.241 Sum_probs=78.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
..+++|||+|.+|..++..+.+. +...+.+++++++ ++++++++++.. ...+.+.++++++ +|+|++++|
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~---g~~~v~v~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Dvvi~~~~ 90 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAEL---GAAKIVIVNRTLE---KAKALAERFGELGIAIAYLDLEELLAE--ADLIINTTP 90 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCCEEEEEcCCHH---HHHHHHHHHhhcccceeecchhhcccc--CCEEEeCcC
Confidence 57899999999999999998775 3555668899887 455555555531 0245677777654 899999999
Q ss_pred CCcc----HHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCH
Q 017143 84 NMTH----YQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP 141 (376)
Q Consensus 84 ~~~h----~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p 141 (376)
+..| .......++ .|+ ++++=- ...... ++.+.+++. |..+..|+..--..
T Consensus 91 ~~~~~~~~~~~~~~~~~--~~~-~v~D~~--~~~~~~-~l~~~~~~~-g~~~v~g~~~~~~q 145 (155)
T cd01065 91 VGMKPGDELPLPPSLLK--PGG-VVYDVV--YNPLET-PLLKEARAL-GAKTIDGLEMLVYQ 145 (155)
T ss_pred CCCCCCCCCCCCHHHcC--CCC-EEEEcC--cCCCCC-HHHHHHHHC-CCceeCCHHHHHHH
Confidence 9987 223334566 554 444331 111212 777888444 77777665544333
No 61
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=98.28 E-value=8.7e-05 Score=70.12 Aligned_cols=214 Identities=14% Similarity=0.105 Sum_probs=137.1
Q ss_pred ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------------------CC
Q 017143 6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------------------LK 61 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------------------~~ 61 (376)
+.||+|+|+ |.+|..-+.-+++++ ..|+++++...+.- +.+.+.+++|.-. +.
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~p-d~f~vvaLaag~Ni--~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~ 133 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENP-DKFKVVALAAGSNV--TLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPE 133 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCc-cccEEEEEECCCCH--HHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcE
Confidence 479999997 999999888888763 56999999876543 2344433333211 11
Q ss_pred cc---CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccc
Q 017143 62 VF---PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYR 138 (376)
Q Consensus 62 ~~---~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r 138 (376)
++ +++.++++.+++|.|+.+..-..=......||+ +||+|.+.--= .=+.....|.+++ +++++.+..-
T Consensus 134 vl~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIk--aGK~VALANKE-SLV~aG~lI~~~a-k~~~~~IlPV---- 205 (454)
T PLN02696 134 IIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIE--AGKDIALANKE-TLIAGGPFVLPLA-KKHGVKILPA---- 205 (454)
T ss_pred EEECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHH--CCCcEEEecHH-HHHhhHHHHHHHH-HHcCCeEeec----
Confidence 22 356677778889999998887666777799999 89998774331 1233344566777 4446554433
Q ss_pred cCHHHHHHHHHHHcCCCCceEEEEEeeccCCccc---------------ccCccccccccC--CcccccccccHHHHHHH
Q 017143 139 YMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLV---------------KVNDWNRFNENT--GGTLVEKCCHFFDLMRL 201 (376)
Q Consensus 139 ~~p~~~~~k~~i~~g~iG~i~~~~~~~~~~~~~~---------------~~~~w~~~~~~~--gG~l~d~g~H~ld~~~~ 201 (376)
+.....+-|.++...-++|..+...-..+++.. .-++|..-++-+ .-.|++-|.-.+ =+.|
T Consensus 206 -DSEHsAIfQ~L~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vT~~~ALkHP~W~MG~KITIDSATmmNKglEvI-EA~~ 283 (454)
T PLN02696 206 -DSEHSAIFQCIQGLPEGGLRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLMNKGLEVI-EAHY 283 (454)
T ss_pred -chhhHHHHHHccCCCccCccEEEEECCchhccCCCHHHHhCCCHHHHhhCCCCcCCCeeeeehHhhhhhhHHHH-HHHH
Confidence 444556667776544455777777655665543 135776554422 334555544333 3578
Q ss_pred HhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143 202 FVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG 248 (376)
Q Consensus 202 l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~ 248 (376)
|||-++.++.+..+. ....+.+++|.||.+.
T Consensus 284 LF~~~~d~I~vvIHP----------------qSiIHsmVef~DGS~~ 314 (454)
T PLN02696 284 LFGADYDDIDIVIHP----------------QSIIHSMVETQDSSVL 314 (454)
T ss_pred HcCCCHHHeEEEECc----------------CCeeeEEEEEcCCcEE
Confidence 999777777776443 2458899999998664
No 62
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.24 E-value=3.6e-06 Score=77.07 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=69.1
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc---CCCCCccCCHHHHhhCCCCCEEEEe
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF---DWPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
...+++|||+|.+|+.|+.++... .+++-+.|++++++ +++++++++ ++++. +++.++++.+ .|+|+.|
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~--~~~~~v~v~~r~~~---~a~~~a~~~~~~~~~~~-~~~~~~av~~--aDiVita 195 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAG--LPVRRVWVRGRTAA---SAAAFCAHARALGPTAE-PLDGEAIPEA--VDLVVTA 195 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh--CCCCEEEEEcCCHH---HHHHHHHHHHhcCCeeE-ECCHHHHhhc--CCEEEEc
Confidence 346899999999999999999876 45677889999998 555666554 44422 6889999875 8999999
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEe
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~E 106 (376)
||... .++...++ .|.||.+=
T Consensus 196 T~s~~--Pl~~~~~~--~g~hi~~i 216 (304)
T PRK07340 196 TTSRT--PVYPEAAR--AGRLVVAV 216 (304)
T ss_pred cCCCC--ceeCccCC--CCCEEEec
Confidence 99654 33444578 88999883
No 63
>PRK07680 late competence protein ComER; Validated
Probab=98.21 E-value=6.2e-05 Score=68.09 Aligned_cols=103 Identities=17% Similarity=0.291 Sum_probs=69.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
++|+|||+|.+|...+..+.+...-...-+.+++++++ +++++++++ ++. .+.+.++++.. .|+|++++|+.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~---~~~~~~~~~~g~~--~~~~~~~~~~~--aDiVilav~p~ 73 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPA---KAYHIKERYPGIH--VAKTIEEVISQ--SDLIFICVKPL 73 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHH---HHHHHHHHcCCeE--EECCHHHHHHh--CCEEEEecCHH
Confidence 37999999999999988887651001234668999887 455666665 553 67788888865 89999999988
Q ss_pred ccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHH
Q 017143 86 THYQILMDI---INHPKPHHVLVEKPLCTTVADCKKV 119 (376)
Q Consensus 86 ~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l 119 (376)
...+++.+. ++ .++ +++-=.-+.+.++..++
T Consensus 74 ~~~~vl~~l~~~l~--~~~-~iis~~ag~~~~~L~~~ 107 (273)
T PRK07680 74 DIYPLLQKLAPHLT--DEH-CLVSITSPISVEQLETL 107 (273)
T ss_pred HHHHHHHHHHhhcC--CCC-EEEEECCCCCHHHHHHH
Confidence 776666553 33 343 44433334466655544
No 64
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.19 E-value=1.5e-05 Score=71.86 Aligned_cols=106 Identities=13% Similarity=0.205 Sum_probs=74.8
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
+||+|||+|.||...+..+.+..- +..+ +.+++++++ +++++.+++|+. .+++.++++.+ .|+|++|++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~-I~v~~r~~~---~~~~l~~~~g~~--~~~~~~e~~~~--aDiIiLavkP~ 74 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQ-IICSDLNVS---NLKNASDKYGIT--ITTNNNEVANS--ADILILSIKPD 74 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCce-EEEECCCHH---HHHHHHHhcCcE--EeCCcHHHHhh--CCEEEEEeChH
Confidence 589999999999998888876410 1224 457899887 566666667854 67788888875 79999999986
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~ 120 (376)
.-.+++......-.+.++++.==...+.++.+++.
T Consensus 75 ~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l 109 (272)
T PRK12491 75 LYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEF 109 (272)
T ss_pred HHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhc
Confidence 55555544321002346777777788888877765
No 65
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=98.19 E-value=3.6e-05 Score=70.47 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=82.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
.||+|||+|.||......+.+. +.+| .++|++++ +.+++.+. |. ....+..+++++ .|+|++|+|+..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~---G~~V-~v~d~~~~---~~~~~~~~-g~--~~~~s~~~~~~~--aDvVi~~vp~~~ 69 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQ---GHQL-QVFDVNPQ---AVDALVDK-GA--TPAASPAQAAAG--AEFVITMLPNGD 69 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHC---CCeE-EEEcCCHH---HHHHHHHc-CC--cccCCHHHHHhc--CCEEEEecCCHH
Confidence 3899999999999988888775 6676 47899988 44455443 54 367888888876 799999999987
Q ss_pred cHHHHHH-------HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc
Q 017143 87 HYQILMD-------IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY 139 (376)
Q Consensus 87 h~~~~~~-------al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~ 139 (376)
+.+.+.. .++ .| .++++.- +.++...+++.+...++ |+.+.-+.....
T Consensus 70 ~~~~vl~~~~~i~~~l~--~g-~lvid~s-T~~p~~~~~l~~~l~~~-g~~~ldapV~g~ 124 (296)
T PRK15461 70 LVRSVLFGENGVCEGLS--RD-ALVIDMS-TIHPLQTDKLIADMQAK-GFSMMDVPVGRT 124 (296)
T ss_pred HHHHHHcCcccHhhcCC--CC-CEEEECC-CCCHHHHHHHHHHHHHc-CCcEEEccCCCC
Confidence 6555532 123 33 4666664 56888999998888444 666554444443
No 66
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.19 E-value=2.8e-05 Score=71.23 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=74.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~t~~~ 85 (376)
+||+|||+|.||..+...+.+. +.+|+ ++|++++ +++++.+ .+.. .+.+.+++.+. ..+|+|++++|+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~---g~~V~-~~dr~~~---~~~~l~~-~g~~--~~~s~~~~~~~~~~~dvIi~~vp~~ 70 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR---GHDCV-GYDHDQD---AVKAMKE-DRTT--GVANLRELSQRLSAPRVVWVMVPHG 70 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC---CCEEE-EEECCHH---HHHHHHH-cCCc--ccCCHHHHHhhcCCCCEEEEEcCch
Confidence 3799999999999988888774 78876 5899988 4555554 3543 55778887653 3589999999998
Q ss_pred ccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEE
Q 017143 86 THYQILMDI---INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILV 131 (376)
Q Consensus 86 ~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 131 (376)
...+++.+. ++ .| .++++-. .....+..++.+.+++ .|+.+
T Consensus 71 ~~~~v~~~l~~~l~--~g-~ivid~s-t~~~~~t~~~~~~~~~-~g~~~ 114 (298)
T TIGR00872 71 IVDAVLEELAPTLE--KG-DIVIDGG-NSYYKDSLRRYKLLKE-KGIHL 114 (298)
T ss_pred HHHHHHHHHHhhCC--CC-CEEEECC-CCCcccHHHHHHHHHh-cCCeE
Confidence 545554433 34 44 5667622 2344667777777734 36543
No 67
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.18 E-value=3.7e-05 Score=70.54 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=79.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCC-CCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSG-LCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~D~V~i~t~~~ 85 (376)
+||||||+|.||......|.+. +.+|+ ++|++++ +++++. +.|. ..+++.+++.+.. ++|+|+++.|+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~---g~~v~-v~dr~~~---~~~~~~-~~g~--~~~~~~~e~~~~~~~~dvvi~~v~~~ 70 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG---GHEVV-GYDRNPE---AVEALA-EEGA--TGADSLEELVAKLPAPRVVWLMVPAG 70 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC---CCeEE-EEECCHH---HHHHHH-HCCC--eecCCHHHHHhhcCCCCEEEEEecCC
Confidence 3899999999999998888774 77765 6899987 444543 3565 4788999998752 479999999998
Q ss_pred ccHHHHH-H---HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143 86 THYQILM-D---IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG 134 (376)
Q Consensus 86 ~h~~~~~-~---al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~ 134 (376)
.+..-+. . .++ .| +++++-- +.+....+++.+.++++ |+.+.-+
T Consensus 71 ~~~~~v~~~l~~~l~--~g-~ivid~s-t~~~~~~~~~~~~~~~~-g~~~~da 118 (301)
T PRK09599 71 EITDATIDELAPLLS--PG-DIVIDGG-NSYYKDDIRRAELLAEK-GIHFVDV 118 (301)
T ss_pred cHHHHHHHHHHhhCC--CC-CEEEeCC-CCChhHHHHHHHHHHHc-CCEEEeC
Confidence 5544333 2 234 34 5666653 45777888888888444 7665543
No 68
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.16 E-value=0.00016 Score=64.09 Aligned_cols=146 Identities=16% Similarity=0.204 Sum_probs=97.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
++||+|||+|.||...+..+.+...-..+-+.|++++++ +.+.++.+||+. .+++.+++... .|+|+++..|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e---~~~~l~~~~g~~--~~~~~~~~~~~--advv~LavKPq 73 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEE---KRAALAAEYGVV--TTTDNQEAVEE--ADVVFLAVKPQ 73 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHH---HHHHHHHHcCCc--ccCcHHHHHhh--CCEEEEEeChH
Confidence 468999999999999999888862112345668999998 555788899976 47888888876 79999999998
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHH-----------HHHhCCCeEEEEeeccccCHHH-HHHHHHHHcC
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD-----------AARKRPDILVQVGLEYRYMPPV-AKLIQIVKSG 153 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~-----------~a~~~~~~~~~v~~~~r~~p~~-~~~k~~i~~g 153 (376)
...+++.+.-....++.|+. --...+.+..+++.. .+.-..|+. .+..+...++.. ..+.++++
T Consensus 74 ~~~~vl~~l~~~~~~~lvIS-iaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t-~i~~~~~~~~~~~~~v~~l~~-- 149 (266)
T COG0345 74 DLEEVLSKLKPLTKDKLVIS-IAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVT-AISANANVSEEDKAFVEALLS-- 149 (266)
T ss_pred hHHHHHHHhhcccCCCEEEE-EeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcce-eeecCccCCHHHHHHHHHHHH--
Confidence 77777666531114555544 334578888877774 110111222 222233334433 36777777
Q ss_pred CCCceEEEE
Q 017143 154 SIGQVKMVA 162 (376)
Q Consensus 154 ~iG~i~~~~ 162 (376)
.+|+++.+.
T Consensus 150 ~~G~v~~v~ 158 (266)
T COG0345 150 AVGKVVEVE 158 (266)
T ss_pred hcCCeEEec
Confidence 489998876
No 69
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.15 E-value=2.5e-05 Score=68.96 Aligned_cols=114 Identities=19% Similarity=0.233 Sum_probs=86.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
+-+||+||+|.||...+..|.+. +++|+ |+|++.+ +++.|.+. |. ++.++..|+.++ .|.|+.+.|+.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~---G~kVt-V~dr~~~---k~~~f~~~-Ga--~v~~sPaeVae~--sDvvitmv~~~ 102 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKA---GYKVT-VYDRTKD---KCKEFQEA-GA--RVANSPAEVAED--SDVVITMVPNP 102 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHc---CCEEE-EEeCcHH---HHHHHHHh-ch--hhhCCHHHHHhh--cCEEEEEcCCh
Confidence 57999999999999999888885 89977 8999888 78887754 53 589999999988 89999999999
Q ss_pred ccHHHHHH-------HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143 86 THYQILMD-------IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135 (376)
Q Consensus 86 ~h~~~~~~-------al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~ 135 (376)
.|..-+.. .++ .|+...++-. +.++.-.++|.+++..+ +..+.-+.
T Consensus 103 ~~v~~v~~g~~Gvl~g~~--~g~~~~vDmS-Tidp~~s~ei~~~i~~~-~~~~vDAP 155 (327)
T KOG0409|consen 103 KDVKDVLLGKSGVLSGIR--PGKKATVDMS-TIDPDTSLEIAKAISNK-GGRFVDAP 155 (327)
T ss_pred HhhHHHhcCCCcceeecc--CCCceEEecc-ccCHHHHHHHHHHHHhC-CCeEEecc
Confidence 98776553 333 3344434433 45788889999888433 54544443
No 70
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=98.15 E-value=6.2e-05 Score=65.60 Aligned_cols=147 Identities=13% Similarity=0.106 Sum_probs=107.9
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---CCccCCHHHHhhCCCCCEEEEeC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---LKVFPGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~D~V~i~t 82 (376)
.+++.+.|+|.+|...++.+.+. ++++||++++++.++ +.+++++--|.+ +...++++..++...-++++...
T Consensus 2 ~~~vvqyGtG~vGv~air~l~ak--pe~elvgawv~s~ak--~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~ 77 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAK--PELELVGAWVHSAAK--SGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPL 77 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcC--CCCceEEEEecCccc--ccccHHHhcCCCCceeEeecccccceeccccceeeecc
Confidence 38999999999999999998887 899999999999985 334444433333 34567788777764334455444
Q ss_pred CCCccHHHHHHHHcCCCCCeEEEe-----cCCCCCHHHHHHHHHHHHhCCCe-EEEEeeccccCH-HHHHHHHHHHcCCC
Q 017143 83 PNMTHYQILMDIINHPKPHHVLVE-----KPLCTTVADCKKVVDAARKRPDI-LVQVGLEYRYMP-PVAKLIQIVKSGSI 155 (376)
Q Consensus 83 ~~~~h~~~~~~al~~~~g~~Vl~E-----KP~a~~~~e~~~l~~~a~~~~~~-~~~v~~~~r~~p-~~~~~k~~i~~g~i 155 (376)
-+ . ++-..++|+ +|++|.|- -|-...++.+.+..+.|.+. |. .+... --+| ....+--++-+|-.
T Consensus 78 ~~-~-~~~y~rlL~--aGiNVv~~g~~l~yPw~~~PelaeKpl~lAara-Gn~Tl~gt---GI~pGF~~dllpmlLsgpc 149 (350)
T COG3804 78 LP-S-VDEYARLLR--AGINVVTPGPVLQYPWFYPPELAEKPLELAARA-GNATLHGT---GIGPGFVTDLLPMLLSGPC 149 (350)
T ss_pred cc-h-HHHHHHHHH--cCCceeccCccccCCCcCChHHhhchHHHHHhc-CCceEEec---ccCccHHHHHHHHHHcccc
Confidence 44 3 788889999 89999998 67777899999999999554 54 33322 2234 46666677788888
Q ss_pred CceEEEEEe
Q 017143 156 GQVKMVAIR 164 (376)
Q Consensus 156 G~i~~~~~~ 164 (376)
-+|.+++..
T Consensus 150 teve~ir~~ 158 (350)
T COG3804 150 TEVEFIRSE 158 (350)
T ss_pred cceEEEeee
Confidence 888888875
No 71
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.14 E-value=2.3e-05 Score=71.00 Aligned_cols=105 Identities=16% Similarity=0.278 Sum_probs=70.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
.||+|||+|.+|...+..+.+.. -+..+++. ++++++. +.+.+..+++. ...+.+.++++.. .|+|++|+|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~-~~r~~~~--~~~~l~~~~~~-~~~~~~~~e~~~~--aDvVilavpp~ 75 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIIL-YSSSKNE--HFNQLYDKYPT-VELADNEAEIFTK--CDHSFICVPPL 75 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEE-EeCCcHH--HHHHHHHHcCC-eEEeCCHHHHHhh--CCEEEEecCHH
Confidence 57999999999999888887651 01246664 4554321 34455555532 2356788888765 89999999998
Q ss_pred ccHHHHHHH---HcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143 86 THYQILMDI---INHPKPHHVLVEKPLCTTVADCKKVV 120 (376)
Q Consensus 86 ~h~~~~~~a---l~~~~g~~Vl~EKP~a~~~~e~~~l~ 120 (376)
.+.+++.+. ++ .+++|+ -.....+.++.+++.
T Consensus 76 ~~~~vl~~l~~~l~--~~~~iv-S~~aGi~~~~l~~~~ 110 (277)
T PRK06928 76 AVLPLLKDCAPVLT--PDRHVV-SIAAGVSLDDLLEIT 110 (277)
T ss_pred HHHHHHHHHHhhcC--CCCEEE-EECCCCCHHHHHHHc
Confidence 888877655 44 455544 466677888766644
No 72
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.13 E-value=5.8e-05 Score=69.89 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=91.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhc-------CCCcEEEEEeCCChhhHHH----HHHHHH-h---cCCCCCccCCHHHHh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLR-------SQGVSVVCIADPHLQSRQQ----ALKLAN-A---FDWPLKVFPGHQELL 70 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~-------~~~~~~~~v~d~~~~~~~~----~~~~~~-~---~~~~~~~~~~~~~~l 70 (376)
+++|+|+|+|.+|+..+..+.+.. +-+++|++|++++...... ..++.+ . ..+......+.++++
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERA 81 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHh
Confidence 599999999999997777764432 2478999999875542110 001110 0 011000112344445
Q ss_pred hCC-CCCEEEEeCCCC-----ccHHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCH
Q 017143 71 DSG-LCDVVVVSTPNM-----THYQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMP 141 (376)
Q Consensus 71 ~~~-~~D~V~i~t~~~-----~h~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p 141 (376)
.++ ++|+|+=+||+. .-.+++.+||+ +|+||..- +|++.. ..+|.++|++. |+.+. .+...---|
T Consensus 82 ~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~--~G~hVVTANK~~la~~---~~eL~~lA~~~-g~~~~yEasVggGiP 155 (346)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIE--KKMDIVAISKGALVTN---WREINEAAKIA-NVRIRYSGATAAALP 155 (346)
T ss_pred cCCCCCCEEEECCCCccCCchHHHHHHHHHHH--CCCeEEcCCcHHHhcc---HHHHHHHHHHc-CCeEEEeeeeeeccc
Confidence 444 689999999875 34677899999 99999774 355544 47788888544 55544 343445678
Q ss_pred HHHHHHHHHHcCCCCceEEEEE
Q 017143 142 PVAKLIQIVKSGSIGQVKMVAI 163 (376)
Q Consensus 142 ~~~~~k~~i~~g~iG~i~~~~~ 163 (376)
.+..++..+... +|..++.
T Consensus 156 iI~~l~~~~~g~---~I~~i~G 174 (346)
T PRK06813 156 TLDIGQFSLAGC---HIEKIEG 174 (346)
T ss_pred hHHHHhhhcccC---cEEEEEE
Confidence 888885544433 5555554
No 73
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.11 E-value=1.2e-05 Score=74.55 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=69.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh----cCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA----FDWPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
.-+++|||+|..|+.|+.++... .+++-+.|++|+++ ++++++++ +++++..++++++.+.+ .|+|+.|
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~--~~i~~v~V~~R~~~---~a~~~a~~~~~~~g~~v~~~~~~~~av~~--aDiVvta 201 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLV--RDIRSARIWARDSA---KAEALALQLSSLLGIDVTAATDPRAAMSG--ADIIVTT 201 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHh--CCccEEEEECCCHH---HHHHHHHHHHhhcCceEEEeCCHHHHhcc--CCEEEEe
Confidence 46899999999999999999876 57888889999998 45555543 46654457899999875 8999999
Q ss_pred CCCCccHHHH-HHHHcCCCCCeEEE
Q 017143 82 TPNMTHYQIL-MDIINHPKPHHVLV 105 (376)
Q Consensus 82 t~~~~h~~~~-~~al~~~~g~~Vl~ 105 (376)
||... +++ .+.++ .|.||..
T Consensus 202 T~s~~--p~i~~~~l~--~g~~i~~ 222 (326)
T TIGR02992 202 TPSET--PILHAEWLE--PGQHVTA 222 (326)
T ss_pred cCCCC--cEecHHHcC--CCcEEEe
Confidence 98743 333 35688 8899884
No 74
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.10 E-value=6.6e-05 Score=68.67 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=97.8
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
-+|+|+|+|..|...++-.+.+ +.++++ +|+++++++.++++.+.+.+..+ -.+.-+.+.. .+|+++.+.+ ..
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~---ga~Via-~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~-~~d~ii~tv~-~~ 240 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAM---GAEVIA-ITRSEEKLELAKKLGADHVINSS-DSDALEAVKE-IADAIIDTVG-PA 240 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHc---CCeEEE-EeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHh-hCcEEEECCC-hh
Confidence 5899999998777666665655 699886 57888866655655443333211 1222233332 2999999999 87
Q ss_pred cHHHHHHHHcCCCCCeEEEecCC----C-------------------CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHH
Q 017143 87 HYQILMDIINHPKPHHVLVEKPL----C-------------------TTVADCKKVVDAARKRPDILVQVGLEYRYMPPV 143 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~EKP~----a-------------------~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~ 143 (376)
-.+..+++|+.+ |..|++=-|. . -+..|.+++++.+ .++++.-.+......+...
T Consensus 241 ~~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~-~~g~Ikp~i~e~~~l~~in 318 (339)
T COG1064 241 TLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFA-AEGKIKPEILETIPLDEIN 318 (339)
T ss_pred hHHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHH-HhCCceeeEEeeECHHHHH
Confidence 888999999864 8888874442 1 1458999999999 6678888887667777766
Q ss_pred HHHHHHHHcCCCCce
Q 017143 144 AKLIQIVKSGSIGQV 158 (376)
Q Consensus 144 ~~~k~~i~~g~iG~i 158 (376)
....++.+....|++
T Consensus 319 ~A~~~m~~g~v~gR~ 333 (339)
T COG1064 319 EAYERMEKGKVRGRA 333 (339)
T ss_pred HHHHHHHcCCeeeEE
Confidence 666666554445555
No 75
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.09 E-value=1.4e-05 Score=73.65 Aligned_cols=109 Identities=14% Similarity=0.178 Sum_probs=74.0
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc---CCCCCccCCHHHHhhCCCCCEEEEe
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF---DWPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
...+|+|||+|.+|+.|+..+... .+++-+.|++|+++ +++++++++ ++++..+++.++++.+ .|+|+.+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~--~~~~~V~V~~Rs~~---~a~~~a~~~~~~g~~~~~~~~~~~av~~--aDIVi~a 196 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV--RPIKQVRVWGRDPA---KAEALAAELRAQGFDAEVVTDLEAAVRQ--ADIISCA 196 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc--CCCCEEEEEcCCHH---HHHHHHHHHHhcCCceEEeCCHHHHHhc--CCEEEEe
Confidence 346899999999999999887775 34565668999988 555666553 4334467899988876 8999888
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~ 126 (376)
|+.. +.-+-.+.++ .|.||.+=- .+....+|+-....++
T Consensus 197 T~s~-~pvl~~~~l~--~g~~i~~ig---~~~~~~~El~~~~~~~ 235 (314)
T PRK06141 197 TLST-EPLVRGEWLK--PGTHLDLVG---NFTPDMRECDDEAIRR 235 (314)
T ss_pred eCCC-CCEecHHHcC--CCCEEEeeC---CCCcccccCCHHHHhc
Confidence 8765 3222335678 788887632 3333444444444233
No 76
>PLN02700 homoserine dehydrogenase family protein
Probab=98.09 E-value=0.0002 Score=66.77 Aligned_cols=149 Identities=19% Similarity=0.214 Sum_probs=94.2
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhc------CCCcEEEEEeCCChhhH-----------HHHHH-H---HHhcCCCCCc
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLR------SQGVSVVCIADPHLQSR-----------QQALK-L---ANAFDWPLKV 62 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~------~~~~~~~~v~d~~~~~~-----------~~~~~-~---~~~~~~~~~~ 62 (376)
|++++|+|||+|.+|+..+..+.+.+ +-+++|++|++....-. +...+ + .+...+. .
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~--~ 78 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLS--A 78 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchh--h
Confidence 45799999999999987777654432 23578899987532111 01111 1 1111111 1
Q ss_pred c-------------------CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHH
Q 017143 63 F-------------------PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVD 121 (376)
Q Consensus 63 ~-------------------~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~ 121 (376)
+ .+..+.+.+...++++-||+...-.++..++|+ +|+||..- +|++.+.++..+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ViVD~T~s~~~~~~y~~aL~--~G~hVVTaNK~~~a~~~~~~~~la- 155 (377)
T PLN02700 79 LGALAGGCQVFNNSELSRKVIDIATLLGKSTGLVVVDCSASMETIGALNEAVD--LGCCIVLANKKPLTSTLEDYDKLA- 155 (377)
T ss_pred hhhccccccccccccccchhhhHHHHhhccCCCEEEECCCChHHHHHHHHHHH--CCCeEEcCCchHhccCHHHHHHHH-
Confidence 1 223344433346899999998776889999999 99999874 57777777766655
Q ss_pred HHHhCCCeEE-EEeeccccCHHHHHHHHHHHcCCCCceEEEEE
Q 017143 122 AARKRPDILV-QVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163 (376)
Q Consensus 122 ~a~~~~~~~~-~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~~~ 163 (376)
++ ++.+ +-+-..---|.+..+++++.+|. +|..++.
T Consensus 156 ---~~-~~~~~yEatVgaGlPiI~tl~~ll~sGd--~I~~I~G 192 (377)
T PLN02700 156 ---AH-PRRIRHESTVGAGLPVIASLNRILSSGD--PVHRIVG 192 (377)
T ss_pred ---Hc-CCeEEEEeeeeeccchHHHHHHHhhccC--CEEEEEE
Confidence 33 4443 33444446799999999997643 5666655
No 77
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=98.06 E-value=0.00021 Score=61.27 Aligned_cols=151 Identities=18% Similarity=0.253 Sum_probs=105.3
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhc------CCCcEEEEEeCCCh---------hhH--HHHHHHHHhcCCCCCccCCH
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLR------SQGVSVVCIADPHL---------QSR--QQALKLANAFDWPLKVFPGH 66 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~------~~~~~~~~v~d~~~---------~~~--~~~~~~~~~~~~~~~~~~~~ 66 (376)
|+++.|+++|||.+|+..+..+...+ .-.+.++++||... ..+ +...++..+-+- .+ ++
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~---al-sL 76 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGS---AL-SL 76 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCC---cc-cH
Confidence 45799999999999986655544332 23689999997522 111 112223333231 22 25
Q ss_pred HHHhh----CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE--ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccC
Q 017143 67 QELLD----SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV--EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYM 140 (376)
Q Consensus 67 ~~~l~----~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~--EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~ 140 (376)
+++++ .+.+=+++-+|....-.++-.++++ .|+.+.. -||++.+.+..+.|.... +.++.....+-.----
T Consensus 77 daLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~--~gi~IatpNKKafss~l~~y~~l~~~~-~s~~fi~HEatVGAGL 153 (364)
T KOG0455|consen 77 DALIAKLLGSPTPLILVDNTASMEIAEIYMKFVD--LGICIATPNKKAFSSTLEHYDKLALHS-KSPRFIRHEATVGAGL 153 (364)
T ss_pred HHHHHHHcCCCCceEEEecccHHHHHHHHHHHHh--cCceEecCCcccccccHHHHHHHHhcC-CCCceEEeeccccCCc
Confidence 65554 4777888888888888899999999 7777765 699999999999999888 5555555555555668
Q ss_pred HHHHHHHHHHHcCCCCceEEEEE
Q 017143 141 PPVAKLIQIVKSGSIGQVKMVAI 163 (376)
Q Consensus 141 p~~~~~k~~i~~g~iG~i~~~~~ 163 (376)
|....++++|..|. +|..+..
T Consensus 154 PiIs~L~eiI~tGD--ev~kIeG 174 (364)
T KOG0455|consen 154 PIISSLNEIISTGD--EVHKIEG 174 (364)
T ss_pred hhHHHHHHHHhcCC--ceeEEEE
Confidence 99999999999865 5555554
No 78
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.05 E-value=3.8e-05 Score=63.32 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=60.4
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-------C----CCCccCCHHHHhhCCCCC
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-------W----PLKVFPGHQELLDSGLCD 76 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~l~~~~~D 76 (376)
||+|||+|.+|......+... +.+ |-++.++++. .+.+.+... + .+..++|+++++++ .|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~---g~~-V~l~~~~~~~---~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~--ad 71 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN---GHE-VTLWGRDEEQ---IEEINETRQNPKYLPGIKLPENIKATTDLEEALED--AD 71 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC---TEE-EEEETSCHHH---HHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT---S
T ss_pred CEEEECcCHHHHHHHHHHHHc---CCE-EEEEeccHHH---HHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc--cc
Confidence 799999999999877777765 566 4489999874 444433211 1 13467899999986 79
Q ss_pred EEEEeCCCCccHHHHHHHHcCC-CCCeEEE
Q 017143 77 VVVVSTPNMTHYQILMDIINHP-KPHHVLV 105 (376)
Q Consensus 77 ~V~i~t~~~~h~~~~~~al~~~-~g~~Vl~ 105 (376)
+|++++|...|.+++.+....- .+..+++
T Consensus 72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 72 IIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp EEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred EEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 9999999999998888764311 4444443
No 79
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.04 E-value=2.6e-05 Score=64.56 Aligned_cols=101 Identities=20% Similarity=0.201 Sum_probs=77.2
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCC---CCCEEEEe
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSG---LCDVVVVS 81 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~D~V~i~ 81 (376)
+|.||+|||.|++|...+..+.++. ..++.-+.+..|+.+.. ..-+.++|++ ......+-+|..| ++|+|+-+
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr~g-~~le~~~mvgidp~sdg--laraarlgv~-tt~egv~~ll~~p~~~di~lvfda 78 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILRHG-QHLEMAVMVGIDPQSDG--LARAARLGVA-TTHEGVIGLLNMPEFADIDLVFDA 78 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHhcC-CcccceeEEccCCCccH--HHHHHhcCCc-chhhHHHHHHhCCCCCCcceEEec
Confidence 4899999999999987555444431 67777777878777533 3335678987 6667788888864 67899999
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVEKPLCT 111 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~ 111 (376)
|....|...+-+..+ .|...+-=.|.+.
T Consensus 79 tsa~~h~~~a~~~ae--~gi~~idltpaai 106 (310)
T COG4569 79 TSAGAHVKNAAALAE--AGIRLIDLTPAAI 106 (310)
T ss_pred cccchhhcchHhHHh--cCCceeecchhcc
Confidence 999999999999999 8888776666554
No 80
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.99 E-value=9.9e-05 Score=67.44 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=76.1
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH 87 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h 87 (376)
||+|||+|.+|......+.+. +++|+ ++|+++++ ++++. +.|. ..+++.++++++ .|+|++|.|+..+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~---G~~V~-~~dr~~~~---~~~~~-~~g~--~~~~~~~~~~~~--aDivi~~vp~~~~ 68 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA---GYQLH-VTTIGPEV---ADELL-AAGA--VTAETARQVTEQ--ADVIFTMVPDSPQ 68 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC---CCeEE-EEcCCHHH---HHHHH-HCCC--cccCCHHHHHhc--CCEEEEecCCHHH
Confidence 699999999999988888775 67876 68999874 44443 3354 356788888876 8999999998766
Q ss_pred HHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143 88 YQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV 133 (376)
Q Consensus 88 ~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v 133 (376)
...+. ..++ .| .+++.-- +.++...+++.+.++++ ++.+..
T Consensus 69 ~~~v~~~~~~~~~~~~--~g-~iivd~s-t~~~~~~~~l~~~l~~~-g~~~~~ 116 (291)
T TIGR01505 69 VEEVAFGENGIIEGAK--PG-KTLVDMS-SISPIESKRFAKAVKEK-GIDYLD 116 (291)
T ss_pred HHHHHcCcchHhhcCC--CC-CEEEECC-CCCHHHHHHHHHHHHHc-CCCEEe
Confidence 55443 1223 33 3555533 55678888888888443 555444
No 81
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.97 E-value=0.00038 Score=71.79 Aligned_cols=153 Identities=14% Similarity=0.025 Sum_probs=98.0
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhc-------CCCcEEEEEeCCChhh-------HHHHH-HHHHhcCCCCCccCCHHH
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLR-------SQGVSVVCIADPHLQS-------RQQAL-KLANAFDWPLKVFPGHQE 68 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~-------~~~~~~~~v~d~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~ 68 (376)
+++++|+|+|+|.+|+..+..+.+.+ +-+++|++|++++... .+... .+..... + .-.+.+-+
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~-~-~~~~~~~e 533 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAV-E-WDEESLFL 533 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcC-C-ccHHHHHH
Confidence 46799999999999987777664432 2478899999875431 11111 1111111 1 11122334
Q ss_pred HhhC--CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe-c-CCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCHHH
Q 017143 69 LLDS--GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE-K-PLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMPPV 143 (376)
Q Consensus 69 ~l~~--~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E-K-P~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p~~ 143 (376)
++.. .+.++|+=||+...-..+..+||+ +|+||..- | +++.......+|.++++++ |+.+. -+-..---|..
T Consensus 534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~--~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~-~~~~~yEasV~~giPii 610 (810)
T PRK09466 534 WLRAHPYDELVVLDVTASEQLALQYPDFAS--HGFHVISANKLAGSSPSNFYRQIKDAFAKT-GRHWLYNATVGAGLPIN 610 (810)
T ss_pred HHhhcCCCCcEEEECCCChHHHHHHHHHHH--cCCEEEcCCcccccccHHHHHHHHHHHHHc-CCeEEEeceeeeccChH
Confidence 4442 234588889987766667779999 99999875 3 3445678999999999554 65544 33334456888
Q ss_pred HHHHHHHHcCCCCceEEEEE
Q 017143 144 AKLIQIVKSGSIGQVKMVAI 163 (376)
Q Consensus 144 ~~~k~~i~~g~iG~i~~~~~ 163 (376)
..++.++++|. +|..++.
T Consensus 611 ~~l~~l~~~gd--~i~~i~G 628 (810)
T PRK09466 611 HTVRDLRNSGD--SILAISG 628 (810)
T ss_pred HHHHHHHhccC--cEEEEEE
Confidence 88888887632 7777776
No 82
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.96 E-value=0.00014 Score=64.87 Aligned_cols=131 Identities=9% Similarity=0.042 Sum_probs=93.0
Q ss_pred CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhCC---CCC-E
Q 017143 5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELLDSG---LCD-V 77 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~---~~D-~ 77 (376)
+.+||.|.|+ |.||+..+.++.+ ++++|++..|+.+...+..-++. |.++..+ +|++++|... .+| +
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~---~~~~Lv~~~~~~~~~~~~~~~~~---g~~v~~~~~~dl~~~l~~~~~~~~~~V 83 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS---AGLQLVPVSFTGPAGVGVTVEVC---GVEVRLVGPSEREAVLSSVKAEYPNLI 83 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc---CCCEEEEEeccccccccccceec---cceeeeecCccHHHHHHHhhccCCCEE
Confidence 4699999996 8899998888777 58999999997664211110222 2223477 9999999653 689 7
Q ss_pred EEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH
Q 017143 78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV 150 (376)
Q Consensus 78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i 150 (376)
+|-.|.|..-.+.+..|++ +|+++.+=-.. .+.++. .+.+ +++++.+.+..| |+-.+..+.+++
T Consensus 84 vIDFT~P~a~~~~~~~~~~--~g~~~VvGTTG-~~~e~l---~~~~-~~~~i~vv~apN--fSiGv~ll~~l~ 147 (286)
T PLN02775 84 VVDYTLPDAVNDNAELYCK--NGLPFVMGTTG-GDRDRL---LKDV-EESGVYAVIAPQ--MGKQVVAFQAAM 147 (286)
T ss_pred EEECCChHHHHHHHHHHHH--CCCCEEEECCC-CCHHHH---HHHH-hcCCccEEEECc--ccHHHHHHHHHH
Confidence 8889999999999999999 89999987775 455654 4445 334666555544 555565555655
No 83
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.96 E-value=5.2e-05 Score=64.14 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=66.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH------------HHHh-c-CCCCCccCCHHHHhhC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK------------LANA-F-DWPLKVFPGHQELLDS 72 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~------------~~~~-~-~~~~~~~~~~~~~l~~ 72 (376)
|||+|||+|.+|.-..-.+++. ++++++ +|.++++.+...+ +-++ . .-..+.++++++.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~---G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK---GHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKD 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT---TSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC---CCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhc
Confidence 6999999999999988888885 899886 6999985433321 1111 0 0112355677777766
Q ss_pred CCCCEEEEeCCCCcc---------H----HHHHHHHcCCCCCeEEEec--CCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143 73 GLCDVVVVSTPNMTH---------Y----QILMDIINHPKPHHVLVEK--PLCTTVADCKKVVDAARKRPDILVQVGLEY 137 (376)
Q Consensus 73 ~~~D~V~i~t~~~~h---------~----~~~~~al~~~~g~~Vl~EK--P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~ 137 (376)
.|+++||.|+... . +.+.+.++ .++-|.+|- |..++.+-.+.+.+.. ...+..+.++|+.
T Consensus 77 --adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~--~~~lvV~~STvppGtt~~~~~~ile~~-~~~~~~f~la~~P 151 (185)
T PF03721_consen 77 --ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLR--PGDLVVIESTVPPGTTEELLKPILEKR-SGKKEDFHLAYSP 151 (185)
T ss_dssp ---SEEEE----EBETTTSBETHHHHHHHHHHHHHHC--SCEEEEESSSSSTTHHHHHHHHHHHHH-CCTTTCEEEEE--
T ss_pred --cceEEEecCCCccccCCccHHHHHHHHHHHHHHHh--hcceEEEccEEEEeeehHhhhhhhhhh-cccccCCeEEECC
Confidence 7999999986432 1 12333456 566666665 4444555566676666 3223455555554
Q ss_pred cc
Q 017143 138 RY 139 (376)
Q Consensus 138 r~ 139 (376)
-|
T Consensus 152 Er 153 (185)
T PF03721_consen 152 ER 153 (185)
T ss_dssp --
T ss_pred Cc
Confidence 44
No 84
>PLN02256 arogenate dehydrogenase
Probab=97.95 E-value=5.7e-05 Score=69.11 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=59.1
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
+++++|+|||+|.+|..++..+.+. +.++++ +++++. .+.+.++|+. .+++.++++.. ++|+|++|+|
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~---G~~V~~-~d~~~~-----~~~a~~~gv~--~~~~~~e~~~~-~aDvVilavp 101 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ---GHTVLA-TSRSDY-----SDIAAELGVS--FFRDPDDFCEE-HPDVVLLCTS 101 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC---CCEEEE-EECccH-----HHHHHHcCCe--eeCCHHHHhhC-CCCEEEEecC
Confidence 3568999999999999998888764 578774 566642 2345567764 67889888753 4899999999
Q ss_pred CCccHHHHHHH
Q 017143 84 NMTHYQILMDI 94 (376)
Q Consensus 84 ~~~h~~~~~~a 94 (376)
+....+++.+.
T Consensus 102 ~~~~~~vl~~l 112 (304)
T PLN02256 102 ILSTEAVLRSL 112 (304)
T ss_pred HHHHHHHHHhh
Confidence 98776666554
No 85
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.95 E-value=0.0003 Score=72.96 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=98.5
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhc------CCCcEEEEEeCCChhhHH----HHHHHHHhcC--CCCCccCCHHHHhhC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLR------SQGVSVVCIADPHLQSRQ----QALKLANAFD--WPLKVFPGHQELLDS 72 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~------~~~~~~~~v~d~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~l~~ 72 (376)
++++|+|+|+|.+|...+..+.+.+ +-+++|++|++++..... ....+..... ......+.+-+++..
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVKE 543 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 5799999999999998777765432 237889999976433110 0011111100 000011223344443
Q ss_pred C--CCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe--cCCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCHHHHHHH
Q 017143 73 G--LCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE--KPLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMPPVAKLI 147 (376)
Q Consensus 73 ~--~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E--KP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p~~~~~k 147 (376)
. ..|+|+=||+...-.....+||+ +|+||..- +|++.+.....+|.++|+++ ++.+. .+-..---|....++
T Consensus 544 ~~~~~~vvvd~t~~~~~~~~~~~al~--~g~~VVtaNK~~~a~~~~~~~el~~~a~~~-~~~~~yeatV~~giPii~~l~ 620 (819)
T PRK09436 544 YHLLNPVIVDCTSSQAVADQYADFLA--AGFHVVTPNKKANTSSYAYYHQLREAARKS-RRKFLYETNVGAGLPVIETLQ 620 (819)
T ss_pred cCCCCCEEEECCCChHHHHHHHHHHH--cCCEEEcCCchhccCCHHHHHHHHHHHHHc-CCeEEEeeeeccccchHHHHH
Confidence 2 35899999997655666789999 99999874 46676778999999999554 65554 333444579999999
Q ss_pred HHHHcCCCCceEEEEE
Q 017143 148 QIVKSGSIGQVKMVAI 163 (376)
Q Consensus 148 ~~i~~g~iG~i~~~~~ 163 (376)
++++.|. +|..++.
T Consensus 621 ~~~~~g~--~i~~i~G 634 (819)
T PRK09436 621 NLLNAGD--ELLKFEG 634 (819)
T ss_pred HHHhccC--cEEEEEE
Confidence 9986543 4555554
No 86
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.94 E-value=4.5e-05 Score=70.28 Aligned_cols=97 Identities=24% Similarity=0.267 Sum_probs=67.7
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
...+|+|||+|.+|..++..+... +...+.+++++++ ++.++++++|..+..++++.+.+.. .|+|+.+|+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~---g~~~V~v~~r~~~---ra~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~ 248 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK---GVAEITIANRTYE---RAEELAKELGGNAVPLDELLELLNE--ADVVISATGA 248 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc---CCCEEEEEeCCHH---HHHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCC
Confidence 357999999999999988888764 5555678899887 6778888887542223455666654 8999999998
Q ss_pred CccHHHHHHHHcCCC-CCeEEEecCC
Q 017143 85 MTHYQILMDIINHPK-PHHVLVEKPL 109 (376)
Q Consensus 85 ~~h~~~~~~al~~~~-g~~Vl~EKP~ 109 (376)
.........+++... +..++++=.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 249 PHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 776555555554111 3456766544
No 87
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.94 E-value=9e-05 Score=68.96 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=68.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--hc--CCC----CCccCCHHHHhhCCCCCE
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--AF--DWP----LKVFPGHQELLDSGLCDV 77 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--~~--~~~----~~~~~~~~~~l~~~~~D~ 77 (376)
++||+|||+|.||......|.+. +.+|+ +++++++..+...+... .+ |.. +..+++.++.++. .|+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~---G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~--aD~ 77 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK---GVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG--ADF 77 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC---CCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC--CCE
Confidence 46999999999999988888774 67755 78998874333322110 00 211 1245688887765 899
Q ss_pred EEEeCCCCccHHHHHHHHcCCCCCe-EEEecCCCCCHHHHHHHHHHH
Q 017143 78 VVVSTPNMTHYQILMDIINHPKPHH-VLVEKPLCTTVADCKKVVDAA 123 (376)
Q Consensus 78 V~i~t~~~~h~~~~~~al~~~~g~~-Vl~EKP~a~~~~e~~~l~~~a 123 (376)
|++++|+....+ +.+.++ .+.. |.+-|.+.......+++.+..
T Consensus 78 Vi~~v~~~~~~~-v~~~l~--~~~~vi~~~~Gi~~~~~~~~~l~~~l 121 (328)
T PRK14618 78 AVVAVPSKALRE-TLAGLP--RALGYVSCAKGLAPDGGRLSELARVL 121 (328)
T ss_pred EEEECchHHHHH-HHHhcC--cCCEEEEEeeccccCCCccchHHHHH
Confidence 999999986533 445565 4443 557777654322244444444
No 88
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.93 E-value=1.6e-05 Score=65.14 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCceeEEEEeCChhhHHHHH-HhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143 4 NDTVKYGIIGMGMMGREHFI-NLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~-~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t 82 (376)
.++.++.|||+|.+|+..+. .+... .++++++++|.+++... .+. -++++..-++++..++..++|++++|+
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~--~~~~iv~~FDv~~~~VG--~~~---~~v~V~~~d~le~~v~~~dv~iaiLtV 154 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKK--NGMKIVAAFDVDPDKVG--TKI---GDVPVYDLDDLEKFVKKNDVEIAILTV 154 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhh--cCceEEEEecCCHHHhC--ccc---CCeeeechHHHHHHHHhcCccEEEEEc
Confidence 45789999999999985332 22323 69999999999998321 221 246555567899999988899999999
Q ss_pred CCCccHHHHHHHHcCCCCCeEEEecCCCCCH
Q 017143 83 PNMTHYQILMDIINHPKPHHVLVEKPLCTTV 113 (376)
Q Consensus 83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~ 113 (376)
|...-.+.+...+++| -|.||-=-|+-+..
T Consensus 155 Pa~~AQ~vad~Lv~aG-VkGIlNFtPv~l~~ 184 (211)
T COG2344 155 PAEHAQEVADRLVKAG-VKGILNFTPVRLQV 184 (211)
T ss_pred cHHHHHHHHHHHHHcC-CceEEeccceEecC
Confidence 9666566666677854 45566666655433
No 89
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.93 E-value=0.0002 Score=69.36 Aligned_cols=109 Identities=13% Similarity=0.247 Sum_probs=74.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cCCCCCccCCHHHHhhC-CCCCEEEEeC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FDWPLKVFPGHQELLDS-GLCDVVVVST 82 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~-~~~D~V~i~t 82 (376)
.+|||||+|.||......|.+. +++|+ ++|+++++ ++++.+. .|..+..+++++++++. .++|+|+++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~---G~~V~-v~dr~~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v 74 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR---GFKIS-VYNRTYEK---TEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLI 74 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC---CCeEE-EEeCCHHH---HHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEe
Confidence 4799999999999999988875 77755 79999984 4444332 24323468899999975 3589999998
Q ss_pred CCCccHHHHHH----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143 83 PNMTHYQILMD----IINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126 (376)
Q Consensus 83 ~~~~h~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~ 126 (376)
|+....+-+++ .|+ .| .++++-- ..+..+..++.+.+.++
T Consensus 75 ~~~~~v~~vi~~l~~~L~--~g-~iIID~g-n~~~~dt~~r~~~l~~~ 118 (470)
T PTZ00142 75 KAGEAVDETIDNLLPLLE--KG-DIIIDGG-NEWYLNTERRIKRCEEK 118 (470)
T ss_pred CChHHHHHHHHHHHhhCC--CC-CEEEECC-CCCHHHHHHHHHHHHHc
Confidence 87655444433 234 34 5666653 33567777777777444
No 90
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=97.92 E-value=0.00095 Score=60.81 Aligned_cols=215 Identities=17% Similarity=0.139 Sum_probs=141.3
Q ss_pred ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-------------------C---c
Q 017143 6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-------------------K---V 62 (376)
Q Consensus 6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-------------------~---~ 62 (376)
+.|+.|+| +|.||..-+.-+++++ ..|+|+++..... .+...+.+++|+-.. . .
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~n--~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~~~~v~~G 77 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGKN--VELLAEQIREFKPKYVVIADESAAKELEDLLPGTEVLVG 77 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCC-CcEEEEEEecCCc--HHHHHHHHHHhCCceEEecChHHHHHHHhhccCceEEec
Confidence 36899999 6999999999888884 5689999986642 334555555554220 1 1
Q ss_pred cCCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHH
Q 017143 63 FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPP 142 (376)
Q Consensus 63 ~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~ 142 (376)
.+.+.++.+..+.|.|+.+.--..=....++|++ +||.|.+.--=++ +.-..-+.+++ +++|..+..- +..
T Consensus 78 ~~~l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~--aGK~iaLANKEsL-V~aG~l~~~~~-k~~g~~llPV-----DSE 148 (385)
T COG0743 78 EEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIK--AGKTIALANKESL-VTAGELVMDAA-KESGAQLLPV-----DSE 148 (385)
T ss_pred HHHHHHHHhcCCCCEEeehhhhhcccHHHHHHHH--cCCceeecchhhh-hcccHHHHHHH-HHcCCEEecc-----Cch
Confidence 2335666677789999988887777788999999 8999987543221 22233455666 4446555443 445
Q ss_pred HHHHHHHHHcCCCCceEEEEEeeccCCcccc---------------cCccccccccC--CcccccccccHHHHHHHHhCC
Q 017143 143 VAKLIQIVKSGSIGQVKMVAIREHRFPFLVK---------------VNDWNRFNENT--GGTLVEKCCHFFDLMRLFVGS 205 (376)
Q Consensus 143 ~~~~k~~i~~g~iG~i~~~~~~~~~~~~~~~---------------~~~w~~~~~~~--gG~l~d~g~H~ld~~~~l~G~ 205 (376)
...+-|.++...-+.|..+-..-..+++... -++|..-.+.+ +-.|++-|--.+. +.||||-
T Consensus 149 H~AifQ~L~~~~~~~v~~iiLTASGGpFR~~~~~~L~~VT~eqAl~HPnWsMG~KITvDSATmmNKGLEvIE-A~~LF~~ 227 (385)
T COG0743 149 HNAIFQCLQGETQKGVKKIILTASGGPFRDKSLEELANVTPEQALKHPNWSMGRKITVDSATMMNKGLEVIE-AHWLFGL 227 (385)
T ss_pred hHHHHHHcCccccCcceEEEEecCCCCcCCCCHHHHccCCHHHHhcCCCCCCCCcccccHHHHhhhhHHHHH-HHHHhCC
Confidence 6677778877777778777666555554431 36787655532 3456666554443 5799997
Q ss_pred CCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEEE
Q 017143 206 NPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRGM 249 (376)
Q Consensus 206 ~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~ 249 (376)
+..++....+. ....+.+++|.||.+..
T Consensus 228 ~~~~IeVvIHP----------------QSiIHsmV~~~DGSviA 255 (385)
T COG0743 228 PYEQIEVVIHP----------------QSIIHSMVEYVDGSVIA 255 (385)
T ss_pred CHHHeeEEEcc----------------cchheeeEEeccCCEEE
Confidence 77777765443 13577899999986643
No 91
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.90 E-value=0.00014 Score=65.45 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=54.3
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
+||+|||+|.||...+..|.+... +..+++...++++++ ++.+. ++|+. ..++.++++++ .|+|++|+++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~---~~~~~-~~g~~--~~~~~~e~~~~--aDvVil~v~~~ 72 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPAR---RDVFQ-SLGVK--TAASNTEVVKS--SDVIILAVKPQ 72 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH---HHHHH-HcCCE--EeCChHHHHhc--CCEEEEEECcH
Confidence 579999999999998888876510 112666433988873 44443 46754 67888888865 79999999865
Q ss_pred ccHHHHH
Q 017143 86 THYQILM 92 (376)
Q Consensus 86 ~h~~~~~ 92 (376)
.-.++..
T Consensus 73 ~~~~vl~ 79 (266)
T PLN02688 73 VVKDVLT 79 (266)
T ss_pred HHHHHHH
Confidence 5444443
No 92
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.90 E-value=6.9e-05 Score=68.84 Aligned_cols=94 Identities=16% Similarity=0.302 Sum_probs=72.3
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
+.-+++|||+|..++.|+.++... ..++-+-|+++++++.++..+..++.++++...++.++++.. .|+|+-+|+.
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v--~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~--ADIV~taT~s 202 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV--TDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHA--ANLIVTTTPS 202 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcC--CCEEEEecCC
Confidence 457899999999999999999888 567888899999996554444444446665557899999976 8999999875
Q ss_pred CccHHHH-HHHHcCCCCCeEEEe
Q 017143 85 MTHYQIL-MDIINHPKPHHVLVE 106 (376)
Q Consensus 85 ~~h~~~~-~~al~~~~g~~Vl~E 106 (376)
.. +++ .+-++ .|.||..=
T Consensus 203 ~~--P~~~~~~l~--~G~hi~~i 221 (315)
T PRK06823 203 RE--PLLQAEDIQ--PGTHITAV 221 (315)
T ss_pred CC--ceeCHHHcC--CCcEEEec
Confidence 43 333 35688 89999863
No 93
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.90 E-value=0.00019 Score=65.44 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=77.6
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH 87 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h 87 (376)
||+|||+|.||......|.+. +++++ ++++++. ++++. +.|.. .+.+..++.+. .|+|++|.|+..+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~---G~~v~-v~~~~~~----~~~~~-~~g~~--~~~s~~~~~~~--advVi~~v~~~~~ 68 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARA---GHQLH-VTTIGPV----ADELL-SLGAV--SVETARQVTEA--SDIIFIMVPDTPQ 68 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHC---CCeEE-EEeCCHh----HHHHH-HcCCe--ecCCHHHHHhc--CCEEEEeCCChHH
Confidence 799999999999988888774 67766 7888763 23333 45653 67888888865 8999999999865
Q ss_pred HHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143 88 YQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG 134 (376)
Q Consensus 88 ~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~ 134 (376)
..-+. ..+. .| .++++- -+.++...+++.+.+.++ |+.+..+
T Consensus 69 v~~v~~~~~g~~~~~~--~g-~ivvd~-sT~~p~~~~~~~~~~~~~-G~~~vda 117 (292)
T PRK15059 69 VEEVLFGENGCTKASL--KG-KTIVDM-SSISPIETKRFARQVNEL-GGDYLDA 117 (292)
T ss_pred HHHHHcCCcchhccCC--CC-CEEEEC-CCCCHHHHHHHHHHHHHc-CCCEEEe
Confidence 44432 1123 34 466665 367899999999998554 6665554
No 94
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=97.85 E-value=0.0025 Score=59.19 Aligned_cols=212 Identities=16% Similarity=0.157 Sum_probs=133.0
Q ss_pred eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------------------CCc
Q 017143 7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------------------LKV 62 (376)
Q Consensus 7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------------------~~~ 62 (376)
.||+|+| +|.+|..-+.-+++++ ..|+|++++..+.- +.+.+.+++|+-. +++
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~-~~f~v~~Laa~~n~--~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v 78 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNP-DHFQVVALSAGKNV--ALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEV 78 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCc-cccEEEEEEcCCCH--HHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEE
Confidence 4899999 5999999888887763 46999999876543 2445555554322 111
Q ss_pred c---CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH-HHHHHhCCCeEEEEeeccc
Q 017143 63 F---PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV-VDAARKRPDILVQVGLEYR 138 (376)
Q Consensus 63 ~---~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l-~~~a~~~~~~~~~v~~~~r 138 (376)
+ +.+.++.+.+++|.|+.+..-..=......|++ +||.|.+.-- .++--+-.+ .+.++++ +..+..-
T Consensus 79 ~~G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~--~gk~iaLANK--EsLV~aG~li~~~a~~~-~~~I~PV---- 149 (389)
T TIGR00243 79 LVGEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIR--AGKTIALANK--ESLVTAGHLFLDAVKKY-GVQLLPV---- 149 (389)
T ss_pred EECHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHH--CCCcEEEech--hHHHhhHHHHHHHHHHc-CCeEEee----
Confidence 1 134455555679999999998888899999999 8888877433 233333334 4566343 5343332
Q ss_pred cCHHHHHHHHHHHcC-CCCceEEEEEeeccCCccc---------------ccCccccccccC--CcccccccccHHHHHH
Q 017143 139 YMPPVAKLIQIVKSG-SIGQVKMVAIREHRFPFLV---------------KVNDWNRFNENT--GGTLVEKCCHFFDLMR 200 (376)
Q Consensus 139 ~~p~~~~~k~~i~~g-~iG~i~~~~~~~~~~~~~~---------------~~~~w~~~~~~~--gG~l~d~g~H~ld~~~ 200 (376)
+.....+-|.+++| ...+|..+..+-..+++.. .-+.|..-++-+ .-.|++-|.-.+ =+.
T Consensus 150 -DSEHsAIfQ~L~~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vt~~~AL~HP~W~MG~KITIDSATmmNKglEvI-EA~ 227 (389)
T TIGR00243 150 -DSEHNAIFQSLQHGLEELGVVSIILTASGGAFRDTPLEDLPTVTPQQALKHPNWSMGRKITIDSATMMNKGLEYI-EAR 227 (389)
T ss_pred -cchHhHHHHHcccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHH-HHH
Confidence 33445556666633 2345777766655666543 135776554422 334555544333 357
Q ss_pred HHhCCCCeEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143 201 LFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG 248 (376)
Q Consensus 201 ~l~G~~~~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~ 248 (376)
||||-++.++.+..+. ....+.+++|.||.+.
T Consensus 228 ~LF~~~~d~I~vvIHp----------------qSiIHsmVef~DGSv~ 259 (389)
T TIGR00243 228 WLFGASAEQIDVLIHP----------------QSIIHSMVEFQDGSVI 259 (389)
T ss_pred HHcCCCHHHeEEEECC----------------CCceeEEEEEcCccEE
Confidence 8999777777776443 2468899999998664
No 95
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.84 E-value=9.5e-05 Score=68.61 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=71.2
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---cCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---FDWPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
..-+++|||+|..+..|+.++... -.++=+-|+++++++ +++++++ .++++...++.++++.+ .|+|+-+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~v--r~i~~V~v~~r~~~~---a~~~~~~~~~~~~~v~~~~~~~~av~~--ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKAL--LGIEEIRLYDIDPAA---TAKLARNLAGPGLRIVACRSVAEAVEG--ADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHh--CCceEEEEEeCCHHH---HHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEe
Confidence 346899999999999999999888 467778899999985 4444433 35555567999999987 8999999
Q ss_pred CCCCccHHHH-HHHHcCCCCCeEEEecC
Q 017143 82 TPNMTHYQIL-MDIINHPKPHHVLVEKP 108 (376)
Q Consensus 82 t~~~~h~~~~-~~al~~~~g~~Vl~EKP 108 (376)
|+.....+++ .+.++ .|.||.+=-.
T Consensus 201 T~S~~~~Pvl~~~~lk--pG~hV~aIGs 226 (346)
T PRK07589 201 TADKTNATILTDDMVE--PGMHINAVGG 226 (346)
T ss_pred cCCCCCCceecHHHcC--CCcEEEecCC
Confidence 9754322333 34678 8999987433
No 96
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.83 E-value=7.1e-05 Score=68.41 Aligned_cols=95 Identities=12% Similarity=0.185 Sum_probs=71.8
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
+.-+++|||+|..|..|+.++... ..++=+-|+++++++.+.. +++.+++++++...++.++++.+ .|+|+-+|+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v--~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~--aDIV~taT~ 191 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV--YNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD--ADTITSITN 191 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEecC
Confidence 347899999999999999999988 5788888999999854332 23333457665667999999977 899999988
Q ss_pred CCccHHHHHHHHcCCCCCeEEEe
Q 017143 84 NMTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~E 106 (376)
... .-+-.+-|+ .|.||..=
T Consensus 192 s~~-P~~~~~~l~--pg~hV~ai 211 (301)
T PRK06407 192 SDT-PIFNRKYLG--DEYHVNLA 211 (301)
T ss_pred CCC-cEecHHHcC--CCceEEec
Confidence 543 222234578 88999873
No 97
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.83 E-value=3.6e-05 Score=61.71 Aligned_cols=92 Identities=22% Similarity=0.304 Sum_probs=66.7
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC---CCCCccCCHHHHhhCCCCCEEEEe
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD---WPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
+.-|+.|||+|.+|+..+..+... +++-+.|++|+.+ ++++++++++ +.+..++++.+.+.. .|+|+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~---g~~~i~i~nRt~~---ra~~l~~~~~~~~~~~~~~~~~~~~~~~--~DivI~a 82 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL---GAKEITIVNRTPE---RAEALAEEFGGVNIEAIPLEDLEEALQE--ADIVINA 82 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT---TSSEEEEEESSHH---HHHHHHHHHTGCSEEEEEGGGHCHHHHT--ESEEEE-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEEECCHH---HHHHHHHHcCccccceeeHHHHHHHHhh--CCeEEEe
Confidence 357999999999999999988886 6776668999988 6778887772 222346667777776 8999999
Q ss_pred CCCCccHHHHHHHHcCCCCC---eEEEec
Q 017143 82 TPNMTHYQILMDIINHPKPH---HVLVEK 107 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~---~Vl~EK 107 (376)
||...+ .+-...++ ... .++++=
T Consensus 83 T~~~~~-~i~~~~~~--~~~~~~~~v~Dl 108 (135)
T PF01488_consen 83 TPSGMP-IITEEMLK--KASKKLRLVIDL 108 (135)
T ss_dssp SSTTST-SSTHHHHT--TTCHHCSEEEES
T ss_pred cCCCCc-ccCHHHHH--HHHhhhhceecc
Confidence 997665 44445566 443 477775
No 98
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.82 E-value=3.9e-05 Score=70.61 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=62.9
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
..-+++|||+|..|..|+..+.... .++-+-|++|++++.++..+..+++++++...+|.++++.+ .|+|+-|||.
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~--~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~--aDii~taT~s 202 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVR--PIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRG--ADIIVTATPS 202 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS----SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTT--SSEEEE----
T ss_pred CCceEEEECCCHHHHHHHHHHHHhC--CceEEEEEccChhHHHHHHHhhccccccceeccchhhhccc--CCEEEEccCC
Confidence 3468999999999999999998884 48888999999986554433333467776678999999987 8999999987
Q ss_pred CccHHHHH-HHHcCCCCCeEEEecC
Q 017143 85 MTHYQILM-DIINHPKPHHVLVEKP 108 (376)
Q Consensus 85 ~~h~~~~~-~al~~~~g~~Vl~EKP 108 (376)
....+++. .-|+ .|.||..=-.
T Consensus 203 ~~~~P~~~~~~l~--~g~hi~~iGs 225 (313)
T PF02423_consen 203 TTPAPVFDAEWLK--PGTHINAIGS 225 (313)
T ss_dssp SSEEESB-GGGS---TT-EEEE-S-
T ss_pred CCCCccccHHHcC--CCcEEEEecC
Confidence 66423222 4578 8899987433
No 99
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=97.80 E-value=0.0001 Score=67.91 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=67.7
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH------hcCC-CCC---------------c
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN------AFDW-PLK---------------V 62 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~------~~~~-~~~---------------~ 62 (376)
+++||||+|+|.||+.|++.+.+. +++++++|+|++.+.. ...-+-+ +|.- ++. +
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~-~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v 80 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTE-YMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 80 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHH-HHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEE
Confidence 369999999999999999998876 8999999999765432 2222211 1110 100 0
Q ss_pred --cCCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143 63 --FPGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL 109 (376)
Q Consensus 63 --~~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~ 109 (376)
.++.+++-. +..+|+|+-||......+.+..++++|+ |-|++--|.
T Consensus 81 ~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGa-k~ViiSap~ 129 (338)
T PLN02358 81 FGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGA-KKVVISAPS 129 (338)
T ss_pred EEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCC-EEEEeCCCC
Confidence 011222211 2469999999999999999999999542 556666553
No 100
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.80 E-value=0.00031 Score=64.03 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=76.9
Q ss_pred EEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHH
Q 017143 11 IIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQI 90 (376)
Q Consensus 11 iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~ 90 (376)
|||+|.||......+.+. +.+|+ ++|+++++ .+.+. +.|. ...++.++++++ .|+|++|.|+..+.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~---G~~V~-v~dr~~~~---~~~l~-~~g~--~~~~s~~~~~~~--advVil~vp~~~~~~~ 68 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA---GHPVR-VFDLFPDA---VEEAV-AAGA--QAAASPAEAAEG--ADRVITMLPAGQHVIS 68 (288)
T ss_pred CCcccHhHHHHHHHHHhC---CCeEE-EEeCCHHH---HHHHH-HcCC--eecCCHHHHHhc--CCEEEEeCCChHHHHH
Confidence 689999999888888774 67755 78999874 44443 3464 367889999887 7999999999777555
Q ss_pred HH----HHHcCC-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143 91 LM----DIINHP-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV 133 (376)
Q Consensus 91 ~~----~al~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v 133 (376)
+. ..+... .| .++++-. +.+++..+++.+.+.++ |+.+.-
T Consensus 69 v~~g~~~l~~~~~~g-~~vid~s-t~~p~~~~~~~~~~~~~-g~~~vd 113 (288)
T TIGR01692 69 VYSGDEGILPKVAKG-SLLIDCS-TIDPDSARKLAELAAAH-GAVFMD 113 (288)
T ss_pred HHcCcchHhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHHc-CCcEEE
Confidence 44 222210 33 4666666 88999999999998554 655433
No 101
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=97.76 E-value=4.6e-05 Score=71.09 Aligned_cols=146 Identities=12% Similarity=0.161 Sum_probs=85.8
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC------CCC----CccCCHH-HHhhCCC
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD------WPL----KVFPGHQ-ELLDSGL 74 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------~~~----~~~~~~~-~~l~~~~ 74 (376)
+||+|+|+ |.+|...+..+..+ +.++|+++++.+.. ..+.+...+. .+. ..+.+++ +.+ .+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 73 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRS---AGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS--KD 73 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEEChhh---cCCcchhhccccccCCCccccceeEEEeCCHHHh--cc
Confidence 58999995 88899888888777 78999999875543 2222222221 110 0111222 222 35
Q ss_pred CCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-------e--cCCCC-CH-HHHHHHHHHHHhC-CCeEEEEeeccccCHH
Q 017143 75 CDVVVVSTPNMTHYQILMDIINHPKPHHVLV-------E--KPLCT-TV-ADCKKVVDAARKR-PDILVQVGLEYRYMPP 142 (376)
Q Consensus 75 ~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-------E--KP~a~-~~-~e~~~l~~~a~~~-~~~~~~v~~~~r~~p~ 142 (376)
+|+|+.++|+..|.+++.++++ +|++|+. + .|... .+ .++..+.+.-+++ .+-.+.-+-.+.-...
T Consensus 74 ~DvVf~a~p~~~s~~~~~~~~~--~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~~t~~ 151 (341)
T TIGR00978 74 VDIVFSALPSEVAEEVEPKLAE--AGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTTAGL 151 (341)
T ss_pred CCEEEEeCCHHHHHHHHHHHHH--CCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcHHHHH
Confidence 9999999999999999999999 8899987 2 22211 11 1222332222111 0112333434444555
Q ss_pred HHHHHHHHHcCCCCceEEE
Q 017143 143 VAKLIQIVKSGSIGQVKMV 161 (376)
Q Consensus 143 ~~~~k~~i~~g~iG~i~~~ 161 (376)
...++-+.+.+.|-++...
T Consensus 152 ~lal~pL~~~~~i~~v~v~ 170 (341)
T TIGR00978 152 TLALKPLIDAFGIKKVHVT 170 (341)
T ss_pred HHHHHHHHHhCCCcEEEEE
Confidence 6667777787777654433
No 102
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=97.73 E-value=0.00018 Score=65.96 Aligned_cols=74 Identities=28% Similarity=0.341 Sum_probs=56.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
..+|+|||+|.+|..++..|+.. +++++.. ++... +..+.+++.|+. .. +.+++++. .|+|++++|+.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~s---G~~Vvv~-~r~~~---~s~~~A~~~G~~--~~-s~~eaa~~--ADVVvLaVPd~ 84 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDS---GVDVVVG-LREGS---KSWKKAEADGFE--VL-TVAEAAKW--ADVIMILLPDE 84 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHC---CCEEEEE-ECCch---hhHHHHHHCCCe--eC-CHHHHHhc--CCEEEEcCCHH
Confidence 46899999999999999998775 7787754 44333 233445566764 43 78999887 79999999999
Q ss_pred ccHHHH
Q 017143 86 THYQIL 91 (376)
Q Consensus 86 ~h~~~~ 91 (376)
.+..+.
T Consensus 85 ~~~~V~ 90 (330)
T PRK05479 85 VQAEVY 90 (330)
T ss_pred HHHHHH
Confidence 887776
No 103
>PLN02858 fructose-bisphosphate aldolase
Probab=97.72 E-value=0.00043 Score=75.43 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=93.3
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i 80 (376)
|.+++..+||+||+|.||......|... +++++ ++|++++ +++++... |. ...++.+++.+. .|+|++
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~---G~~V~-v~dr~~~---~~~~l~~~-Ga--~~~~s~~e~~~~--aDvVi~ 386 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKS---NFSVC-GYDVYKP---TLVRFENA-GG--LAGNSPAEVAKD--VDVLVI 386 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHC---CCEEE-EEeCCHH---HHHHHHHc-CC--eecCCHHHHHhc--CCEEEE
Confidence 5454558999999999999998888774 78865 7899987 44555443 43 256889999887 899999
Q ss_pred eCCCCccHHHHH-------HHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHh--------------------CCCeEEEE
Q 017143 81 STPNMTHYQILM-------DIINHPKPHHVLVEKPLCTTVADCKKVVDAARK--------------------RPDILVQV 133 (376)
Q Consensus 81 ~t~~~~h~~~~~-------~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~--------------------~~~~~~~v 133 (376)
|.|+.....-+. ..++ .| .++++-. +.++...+++.+.+.+ .+.+.+|+
T Consensus 387 ~V~~~~~v~~Vl~g~~g~~~~l~--~g-~ivVd~S-TvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imv 462 (1378)
T PLN02858 387 MVANEVQAENVLFGDLGAVSALP--AG-ASIVLSS-TVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMA 462 (1378)
T ss_pred ecCChHHHHHHHhchhhHHhcCC--CC-CEEEECC-CCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEE
Confidence 999876654443 2334 44 4566653 5688888888887744 22345555
Q ss_pred eeccccCHHHHHHHHHHHcCCCCc
Q 017143 134 GLEYRYMPPVAKLIQIVKSGSIGQ 157 (376)
Q Consensus 134 ~~~~r~~p~~~~~k~~i~~g~iG~ 157 (376)
|-. ...+.+++.+++. +|+
T Consensus 463 gG~---~~~~~~~~plL~~--lg~ 481 (1378)
T PLN02858 463 SGT---DEALKSAGSVLSA--LSE 481 (1378)
T ss_pred ECC---HHHHHHHHHHHHH--HhC
Confidence 532 2457777777763 554
No 104
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.71 E-value=0.00032 Score=67.39 Aligned_cols=71 Identities=23% Similarity=0.327 Sum_probs=51.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh------------------cCCCCCccCCHHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA------------------FDWPLKVFPGHQE 68 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 68 (376)
+||+|||+|.+|......+++. +.+|+ ++|+++++. +++.+. .|- +...+++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~---G~~V~-~~d~~~~~v---~~l~~g~~~~~e~~l~~~~~~~~~~g~-l~~~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL---GHEVT-GVDIDQEKV---DKLNKGKSPIYEPGLDELLAKALAAGR-LRATTDYED 72 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc---CCeEE-EEECCHHHH---HHhhcCCCCCCCCCHHHHHHHhhhcCC-eEEECCHHH
Confidence 3799999999999988888774 77866 579988844 333321 121 235567888
Q ss_pred HhhCCCCCEEEEeCCCCcc
Q 017143 69 LLDSGLCDVVVVSTPNMTH 87 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h 87 (376)
++++ .|+|+||+|+..+
T Consensus 73 ~~~~--advvii~vpt~~~ 89 (411)
T TIGR03026 73 AIRD--ADVIIICVPTPLK 89 (411)
T ss_pred HHhh--CCEEEEEeCCCCC
Confidence 8765 8999999998765
No 105
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=97.71 E-value=0.00063 Score=65.96 Aligned_cols=111 Identities=13% Similarity=0.231 Sum_probs=75.6
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc--CCCCCccCCHHHHhhC-CCCCEEEEeCCC
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF--DWPLKVFPGHQELLDS-GLCDVVVVSTPN 84 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~-~~~D~V~i~t~~ 84 (376)
.|||||+|.||...+..+.+. +++|+ ++|++++ +++++.+++ |-.+..+++.+++.+. ..+|+|+++.|+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~---G~~V~-v~drt~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~ 73 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH---GFTVS-VYNRTPE---KTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA 73 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc---CCeEE-EEeCCHH---HHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC
Confidence 489999999999999988875 77755 7899988 555665542 2012367888888864 358999999999
Q ss_pred CccHHHHHHH----HcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeE
Q 017143 85 MTHYQILMDI----INHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL 130 (376)
Q Consensus 85 ~~h~~~~~~a----l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~ 130 (376)
....+.++.. |+ .| +++++-- .....+..++.+.+.++ |+.
T Consensus 74 ~~~v~~Vi~~l~~~L~--~g-~iIID~g-ns~~~~t~~~~~~l~~~-gi~ 118 (467)
T TIGR00873 74 GAPVDAVINQLLPLLE--KG-DIIIDGG-NSHYPDTERRYKELKAK-GIL 118 (467)
T ss_pred cHHHHHHHHHHHhhCC--CC-CEEEECC-CcCHHHHHHHHHHHHhc-CCE
Confidence 7665555443 34 34 5777743 23556666666666343 544
No 106
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.70 E-value=0.0004 Score=62.62 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=83.0
Q ss_pred CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
++-||.|.| +|..|..|.+.+... ++++++-+.+..- . .+-+|++ .|.+++|+-+..++|+++|++|
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~---g~~~v~~V~p~~~----~---~~v~G~~--~y~sv~dlp~~~~~Dlavi~vp 72 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAY---GTNIVGGVTPGKG----G---TTVLGLP--VFDSVKEAVEETGANASVIFVP 72 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhC---CCCEEEEECCCCC----c---ceecCee--ccCCHHHHhhccCCCEEEEecC
Confidence 467999999 599999999998776 5556665555511 1 1135766 9999999987645899999999
Q ss_pred CCccHHHHHHHHcCCCCC-eEEEecCCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCH
Q 017143 84 NMTHYQILMDIINHPKPH-HVLVEKPLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMP 141 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~-~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p 141 (376)
...=.+.+.+|.+ +|. .+.+--.. ....+.++|.+.|++ +|+.+. .|+.--++|
T Consensus 73 a~~v~~~l~e~~~--~Gvk~avIis~G-f~e~~~~~l~~~a~~-~girilGPNc~Giin~ 128 (286)
T TIGR01019 73 APFAADAIFEAID--AGIELIVCITEG-IPVHDMLKVKRYMEE-SGTRLIGPNCPGIITP 128 (286)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEECCC-CCHHHHHHHHHHHHH-cCCEEECCCCceEEcc
Confidence 9999999999999 554 44342221 223355889999955 465543 333333444
No 107
>TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase. This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff.
Probab=97.69 E-value=0.0003 Score=67.87 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=77.0
Q ss_pred ceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HH----------------HHHHHHhc---
Q 017143 6 TVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQ----------------ALKLANAF--- 56 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~----------------~~~~~~~~--- 56 (376)
+..+.|+|+ |-.++ ..+|+|.++. ++++.|+|+.-.+-+.. +. .++|.+..
T Consensus 2 ~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~Iig~aR~~~s~e~f~~~v~~~l~~~~~~~~~~~~~~F~~~~~Y~ 81 (482)
T TIGR00871 2 PCILVIFGASGDLARKKLFPALYRLFRNGLLPPDFRIVGVARRDLSVEDFRKQVREAIIKFETEEIDEQLDDFAQRLSYV 81 (482)
T ss_pred CeEEEEECCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcCcchHHHHHHHHhcCEEE
Confidence 356888885 66665 5777776652 25899998763322211 00 12222211
Q ss_pred --CCC-CCccCCHHHHhhCC-------CCCEEEEeCCCCccHHHHHHHHcCC---CC-CeEEEecCCCCCHHHHHHHHHH
Q 017143 57 --DWP-LKVFPGHQELLDSG-------LCDVVVVSTPNMTHYQILMDIINHP---KP-HHVLVEKPLCTTVADCKKVVDA 122 (376)
Q Consensus 57 --~~~-~~~~~~~~~~l~~~-------~~D~V~i~t~~~~h~~~~~~al~~~---~g-~~Vl~EKP~a~~~~e~~~l~~~ 122 (376)
++. ...|..+.+++.+. .-+++++++||..|..++..+.++| .| ++|+||||++.+++.|++|.+.
T Consensus 82 ~~d~~~~~~y~~L~~~l~~~e~~~~~~~n~lfYLA~PP~~f~~i~~~L~~~gl~~~g~~RIVvEKPFG~DL~SA~~Ln~~ 161 (482)
T TIGR00871 82 SGDYDDDESYDSLNEHLEQLDKTRGTEGNRLFYLATPPSVFGTIIKQLKKHGLNEQGWSRVVVEKPFGHDLASAQELNKQ 161 (482)
T ss_pred ecCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEECChHHHHHHHHHHHHhCCCcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 111 12233444445431 2369999999999999999888833 12 7999999999999999999998
Q ss_pred HH
Q 017143 123 AR 124 (376)
Q Consensus 123 a~ 124 (376)
..
T Consensus 162 l~ 163 (482)
T TIGR00871 162 LR 163 (482)
T ss_pred HH
Confidence 84
No 108
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.68 E-value=0.00018 Score=67.87 Aligned_cols=96 Identities=18% Similarity=0.326 Sum_probs=69.1
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHHhc-CC-CCCccCCHHHHhhCCCCCEEEEe
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLANAF-DW-PLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
..-+++|||+|..+..|+..+...+ +.++-+-|+++++++.++. +++.+++ ++ ++...+|.++++.+ .|+|+-|
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~-~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~--ADIVvta 230 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC-PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG--SDIVTYC 230 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc-CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC--CCEEEEc
Confidence 3468999999999999999998864 5588889999999854332 2233333 33 34567999999987 8999999
Q ss_pred CCCCc----cHHHH-HHHHcCCCCCeEEE
Q 017143 82 TPNMT----HYQIL-MDIINHPKPHHVLV 105 (376)
Q Consensus 82 t~~~~----h~~~~-~~al~~~~g~~Vl~ 105 (376)
|+... -.+++ .+-|+ .|.||.+
T Consensus 231 T~s~~~~~s~~Pv~~~~~lk--pG~hv~~ 257 (379)
T PRK06199 231 NSGETGDPSTYPYVKREWVK--PGAFLLM 257 (379)
T ss_pred cCCCCCCCCcCcEecHHHcC--CCcEEec
Confidence 97422 11222 34678 8899986
No 109
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.68 E-value=0.00065 Score=61.53 Aligned_cols=99 Identities=23% Similarity=0.301 Sum_probs=64.3
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
+||+|||+|.||......+.+.. ...+|+ ++|+++++.+ .+ .+.|+. ..+.+.+++. + .|+|++|+|+..
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g-~~~~v~-~~d~~~~~~~---~~-~~~g~~-~~~~~~~~~~-~--aD~Vilavp~~~ 70 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKG-LISKVY-GYDHNELHLK---KA-LELGLV-DEIVSFEELK-K--CDVIFLAIPVDA 70 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcC-CCCEEE-EEcCCHHHHH---HH-HHCCCC-cccCCHHHHh-c--CCEEEEeCcHHH
Confidence 37999999999999888887651 123544 5799887433 32 345652 3455777754 3 899999999998
Q ss_pred cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143 87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKK 118 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~ 118 (376)
..+.+.+......+. ++++ ++.+.....+
T Consensus 71 ~~~~~~~l~~l~~~~-iv~d--~gs~k~~i~~ 99 (275)
T PRK08507 71 IIEILPKLLDIKENT-TIID--LGSTKAKIIE 99 (275)
T ss_pred HHHHHHHHhccCCCC-EEEE--CccchHHHHH
Confidence 877776654211343 6665 4544444333
No 110
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00026 Score=64.89 Aligned_cols=111 Identities=15% Similarity=0.244 Sum_probs=80.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH-HHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL-KLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.++|||+|..+..|+.++... -+++=+-|++++++..++.. .+.++++.++...+|.+++++. .|+|+-+||..
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v--~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~ 206 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAV--RDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG--ADIVVTATPST 206 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhh--CCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc--CCEEEEecCCC
Confidence 5799999999999999999999 56888889999999655443 4445666545678999999987 89999999987
Q ss_pred ccHHHHHH-HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Q 017143 86 THYQILMD-IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD 128 (376)
Q Consensus 86 ~h~~~~~~-al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~ 128 (376)
. +++.. =|+ .|-||-. +..+..+..||-.....+.+
T Consensus 207 ~--Pil~~~~l~--~G~hI~a---iGad~p~k~Eld~e~l~ra~ 243 (330)
T COG2423 207 E--PVLKAEWLK--PGTHINA---IGADAPGKRELDPEVLARAD 243 (330)
T ss_pred C--CeecHhhcC--CCcEEEe---cCCCCcccccCCHHHHHhcC
Confidence 6 44433 477 7888875 33334444444444434433
No 111
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=97.66 E-value=0.00068 Score=61.66 Aligned_cols=126 Identities=18% Similarity=0.128 Sum_probs=86.1
Q ss_pred CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
+.-||.+-| +|..|..|.+.+... +-++||-+.+..- .+++. .+|+| +|++++|+.+..++|+++|++|
T Consensus 28 ~~t~v~vqGitg~~g~~h~~~~~~y---gt~iv~GV~Pgkg----g~~v~-~~Gvp--vy~sv~ea~~~~~~D~avI~VP 97 (317)
T PTZ00187 28 KNTKVICQGITGKQGTFHTEQAIEY---GTKMVGGVNPKKA----GTTHL-KHGLP--VFATVKEAKKATGADASVIYVP 97 (317)
T ss_pred CCCeEEEecCCChHHHHHHHHHHHh---CCcEEEEECCCCC----CceEe-cCCcc--ccCCHHHHhcccCCCEEEEecC
Confidence 346999999 599999999999887 7788988887651 01110 23776 9999999999877999999999
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCe-EEEEeeccccCHH
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDI-LVQVGLEYRYMPP 142 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~-~~~v~~~~r~~p~ 142 (376)
+..-.+.+++|++ +|....+==.-.....+..++.+.+++++++ .+-.|+.--++|.
T Consensus 98 a~~v~dai~Ea~~--aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~ 155 (317)
T PTZ00187 98 PPHAASAIIEAIE--AEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPG 155 (317)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcch
Confidence 9999999999999 6655433211122233455566665333353 3333333444554
No 112
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.66 E-value=0.00074 Score=65.16 Aligned_cols=114 Identities=16% Similarity=0.247 Sum_probs=73.5
Q ss_pred eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
+||+||| +|.+|......+.+. +.+++ +++++++ .+.+++.++|+. ..++.++++.+ .|+|++|+|+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~---G~~V~-v~~r~~~---~~~~~a~~~gv~--~~~~~~e~~~~--aDvVIlavp~~ 69 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK---GFEVI-VTGRDPK---KGKEVAKELGVE--YANDNIDAAKD--ADIVIISVPIN 69 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC---CCEEE-EEECChH---HHHHHHHHcCCe--eccCHHHHhcc--CCEEEEecCHH
Confidence 4899998 899999988888774 56765 5788876 455667777864 66788888876 89999999987
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG 134 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~ 134 (376)
.-.+++.+....-....++++-- +....-...|.+.. .. ++.+.-+
T Consensus 70 ~~~~vl~~l~~~l~~~~iViDvs-SvK~~~~~~l~~~~-~~-~~~~V~~ 115 (437)
T PRK08655 70 VTEDVIKEVAPHVKEGSLLMDVT-SVKERPVEAMEEYA-PE-GVEILPT 115 (437)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcc-cccHHHHHHHHHhc-CC-CCEEEEc
Confidence 65555555432101224666532 12244445555554 32 4444333
No 113
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.63 E-value=0.00028 Score=63.99 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=53.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
+||+|||+|.||......+.+. +.+|+ ++|++++..+.+ .+ .|.-....++. +.+.+ .|+|++|+|+..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~---g~~V~-~~d~~~~~~~~a---~~-~g~~~~~~~~~-~~~~~--aDlVilavp~~~ 69 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL---GHTVY-GVSRRESTCERA---IE-RGLVDEASTDL-SLLKD--CDLVILALPIGL 69 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC---CCEEE-EEECCHHHHHHH---HH-CCCcccccCCH-hHhcC--CCEEEEcCCHHH
Confidence 3799999999999988888774 66755 678888743333 22 24311233444 44544 899999999887
Q ss_pred cHHHHHHHHc
Q 017143 87 HYQILMDIIN 96 (376)
Q Consensus 87 h~~~~~~al~ 96 (376)
-.+.+.+...
T Consensus 70 ~~~~~~~l~~ 79 (279)
T PRK07417 70 LLPPSEQLIP 79 (279)
T ss_pred HHHHHHHHHH
Confidence 7666655443
No 114
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.63 E-value=0.00057 Score=61.81 Aligned_cols=120 Identities=17% Similarity=0.177 Sum_probs=82.4
Q ss_pred CCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCC--hhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143 4 NDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPH--LQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 4 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i 80 (376)
.++-||.|.|. |.+|...+..+.+. +++.+.-+.+. .+ +-+|++ .|.+++++-+..++|+++|
T Consensus 6 ~~~~~~~v~~~~~~~g~~~l~~l~~~---g~~~v~pVnp~~~~~---------~v~G~~--~y~sv~dlp~~~~~DlAvi 71 (291)
T PRK05678 6 NKDTKVIVQGITGKQGTFHTEQMLAY---GTNIVGGVTPGKGGT---------TVLGLP--VFNTVAEAVEATGANASVI 71 (291)
T ss_pred cCCCeEEEeCCCchHHHHHHHHHHHC---CCCEEEEECCCCCCC---------eEeCee--ccCCHHHHhhccCCCEEEE
Confidence 35789999995 77999999888876 34455455554 22 124766 9999999987435899999
Q ss_pred eCCCCccHHHHHHHHcCCCCCe-EEEecCCCCCHHHHHHHHHHHHhCCCeEEE-EeeccccCH
Q 017143 81 STPNMTHYQILMDIINHPKPHH-VLVEKPLCTTVADCKKVVDAARKRPDILVQ-VGLEYRYMP 141 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~-Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~-v~~~~r~~p 141 (376)
++|...=.+.+.+|.+ +|.. +.+--- ....++.++|.+.|++ +|+.+. .|+.--++|
T Consensus 72 ~vp~~~v~~~l~e~~~--~gvk~avI~s~-Gf~~~~~~~l~~~a~~-~girvlGPNc~Gi~~~ 130 (291)
T PRK05678 72 YVPPPFAADAILEAID--AGIDLIVCITE-GIPVLDMLEVKAYLER-KKTRLIGPNCPGIITP 130 (291)
T ss_pred EcCHHHHHHHHHHHHH--CCCCEEEEECC-CCCHHHHHHHHHHHHH-cCCEEECCCCCccccc
Confidence 9999999999999999 5543 333221 1235666799999954 475553 333333444
No 115
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.62 E-value=0.001 Score=63.86 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=49.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhh-------------C
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLD-------------S 72 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------~ 72 (376)
++||+|||+|.+|......|++. +++++ ++|+++++ .+.+. +-.++ ..-.++++++. .
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~---G~~V~-~~D~~~~~---v~~l~-~g~~~-~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR---QKQVI-GVDINQHA---VDTIN-RGEIH-IVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC---CCEEE-EEeCCHHH---HHHHH-CCCCC-cCCCCHHHHHHHHhhcCceeeeccc
Confidence 57899999999999998888875 78876 57999884 33332 22232 22235555543 1
Q ss_pred CCCCEEEEeCCCC
Q 017143 73 GLCDVVVVSTPNM 85 (376)
Q Consensus 73 ~~~D~V~i~t~~~ 85 (376)
.+.|+|+||.|+.
T Consensus 74 ~~aDvvii~vptp 86 (415)
T PRK11064 74 EPADAFLIAVPTP 86 (415)
T ss_pred ccCCEEEEEcCCC
Confidence 2589999999985
No 116
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=0.00066 Score=62.56 Aligned_cols=106 Identities=21% Similarity=0.340 Sum_probs=73.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH----------------HHHHhcCCCCCccCCHHHH
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL----------------KLANAFDWPLKVFPGHQEL 69 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 69 (376)
..+|||||+|.+|......++.. +++++| +|.++.+.++.. +..+.-. .+.+++.+++
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~---G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~--lraTtd~~~l 82 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASA---GFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGK--LRATTDPEEL 82 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHc---CCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCC--ceEecChhhc
Confidence 48999999999999887777774 999998 589887543322 1111112 2466777666
Q ss_pred hhCCCCCEEEEeCCCCcc-------------HHHHHHHHcCCCCCeEEEec--CCCCCHHHHHHHHHH
Q 017143 70 LDSGLCDVVVVSTPNMTH-------------YQILMDIINHPKPHHVLVEK--PLCTTVADCKKVVDA 122 (376)
Q Consensus 70 l~~~~~D~V~i~t~~~~h-------------~~~~~~al~~~~g~~Vl~EK--P~a~~~~e~~~l~~~ 122 (376)
- ..|+.+||.|+..- .+.+...|+ .|--|.+|- |..+|-+-++-|.+.
T Consensus 83 ~---~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~--kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 83 K---ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLK--KGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred c---cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcC--CCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 4 37999999886432 223344588 899999996 666677777777665
No 117
>PLN02712 arogenate dehydrogenase
Probab=97.61 E-value=0.00024 Score=71.94 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=57.4
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
+++||||||+|.||..++..+.+. +.+|+ ++|++.. . +.+.++|+. .+++.++++.. ..|+|++|+|+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~---G~~V~-~~dr~~~----~-~~a~~~Gv~--~~~~~~el~~~-~aDvVILavP~ 435 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQ---GHTVL-AYSRSDY----S-DEAQKLGVS--YFSDADDLCEE-HPEVILLCTSI 435 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC---cCEEE-EEECChH----H-HHHHHcCCe--EeCCHHHHHhc-CCCEEEECCCh
Confidence 568999999999999999988774 67877 5677643 1 224456754 67899998864 37999999998
Q ss_pred CccHHHHHH
Q 017143 85 MTHYQILMD 93 (376)
Q Consensus 85 ~~h~~~~~~ 93 (376)
..-.+++.+
T Consensus 436 ~~~~~vi~~ 444 (667)
T PLN02712 436 LSTEKVLKS 444 (667)
T ss_pred HHHHHHHHH
Confidence 655555544
No 118
>PLN02712 arogenate dehydrogenase
Probab=97.61 E-value=0.00071 Score=68.53 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=57.4
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
++++|+|||+|.||..++..+.+. +.+|++ +|++... +.+.++|+. .+++.++++.. +.|+|++|+|+
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~---G~~V~~-~dr~~~~-----~~A~~~Gv~--~~~d~~e~~~~-~aDvViLavP~ 118 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ---GHTVLA-HSRSDHS-----LAARSLGVS--FFLDPHDLCER-HPDVILLCTSI 118 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC---CCEEEE-EeCCHHH-----HHHHHcCCE--EeCCHHHHhhc-CCCEEEEcCCH
Confidence 468999999999999999988875 678765 6666431 235567864 68889987754 38999999998
Q ss_pred CccHHHHHH
Q 017143 85 MTHYQILMD 93 (376)
Q Consensus 85 ~~h~~~~~~ 93 (376)
..-.+++.+
T Consensus 119 ~~~~~vl~~ 127 (667)
T PLN02712 119 ISTENVLKS 127 (667)
T ss_pred HHHHHHHHh
Confidence 755555444
No 119
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.61 E-value=0.00032 Score=64.40 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=54.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
..+|+|||+|.+|..++..+... +++++...+++.++ .+++. ++|+. .. +.++++++ .|+|++++|++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~s---G~~Viv~~~~~~~~---~~~a~-~~Gv~--~~-s~~ea~~~--ADiVvLaVpp~ 70 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDS---GLNVIVGLRKGGAS---WKKAT-EDGFK--VG-TVEEAIPQ--ADLIMNLLPDE 70 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC---CCeEEEEECcChhh---HHHHH-HCCCE--EC-CHHHHHhc--CCEEEEeCCcH
Confidence 35799999999999999998875 67766555554442 22322 55764 43 57788766 89999999998
Q ss_pred ccHHHHHH
Q 017143 86 THYQILMD 93 (376)
Q Consensus 86 ~h~~~~~~ 93 (376)
.+...+.+
T Consensus 71 ~~~~~v~~ 78 (314)
T TIGR00465 71 VQHEVYEA 78 (314)
T ss_pred hHHHHHHH
Confidence 66665554
No 120
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=97.61 E-value=0.00064 Score=65.91 Aligned_cols=122 Identities=18% Similarity=0.268 Sum_probs=79.3
Q ss_pred CCCceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HHH-----------------HHHHHh
Q 017143 3 ANDTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQA-----------------LKLANA 55 (376)
Q Consensus 3 ~~~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~~-----------------~~~~~~ 55 (376)
.+.+..+.|+|+ |-.++ ..+|+|.++. ++++.|+|+.-.+-+.. +.. .+|.+.
T Consensus 6 ~~~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~~r~~v~~~l~~~~~~~~~~~~~~~F~~~ 85 (495)
T PRK05722 6 TAEPCDLVIFGATGDLARRKLLPALYNLYKAGLLPEDFRIIGVARRDWSDEDFREVVREALKEFARTPFDEEVWERFLSR 85 (495)
T ss_pred CCCCeEEEEeCCchHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhccCccCHHHHHHHHhh
Confidence 345688999995 66665 5778876662 25899999874432211 111 112221
Q ss_pred c-----CCC-CCccCCHHHHhhC-------CCCCEEEEeCCCCccHHHHHHHHcCCC-----CCeEEEecCCCCCHHHHH
Q 017143 56 F-----DWP-LKVFPGHQELLDS-------GLCDVVVVSTPNMTHYQILMDIINHPK-----PHHVLVEKPLCTTVADCK 117 (376)
Q Consensus 56 ~-----~~~-~~~~~~~~~~l~~-------~~~D~V~i~t~~~~h~~~~~~al~~~~-----g~~Vl~EKP~a~~~~e~~ 117 (376)
. ++. ...|..+.+.+.+ +.-.++++++||..+..++...-++|. ...|.+|||++.+++.|+
T Consensus 86 ~~Y~~~d~~~~e~y~~L~~~L~~~e~~~~~~~nrlFYLAvPPs~F~~I~~~L~~~gl~~~~g~~RIVIEKPFG~DL~SA~ 165 (495)
T PRK05722 86 LYYVSGDVTDPESYERLKELLEELDEERGTGGNRVFYLATPPSLFGTICENLAAAGLNEGGGWRRVVIEKPFGHDLASAR 165 (495)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEEEECCHHHHHHHHHHHHHhCCCcCCCCcEEEEECCCCCCHHHHH
Confidence 1 011 1223344455543 234689999999999999988777331 279999999999999999
Q ss_pred HHHHHHH
Q 017143 118 KVVDAAR 124 (376)
Q Consensus 118 ~l~~~a~ 124 (376)
+|-+...
T Consensus 166 ~Ln~~l~ 172 (495)
T PRK05722 166 ELNDQVG 172 (495)
T ss_pred HHHHHHH
Confidence 9998884
No 121
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.55 E-value=0.0011 Score=60.32 Aligned_cols=104 Identities=12% Similarity=0.178 Sum_probs=64.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--------hcCCC-----------CCccCCH
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--------AFDWP-----------LKVFPGH 66 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--------~~~~~-----------~~~~~~~ 66 (376)
..||+|||+|.+|......++.. +.+|+ ++|++++..+++.+..+ ...+. +...+|+
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~---G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~ 78 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH---GFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDL 78 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCH
Confidence 35899999999999888777664 66754 78999886655543211 11110 2356788
Q ss_pred HHHhhCCCCCEEEEeCCCCc--cHHHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143 67 QELLDSGLCDVVVVSTPNMT--HYQILMDIINHPKPHHVLVEKPLCTTVAD 115 (376)
Q Consensus 67 ~~~l~~~~~D~V~i~t~~~~--h~~~~~~al~~~~g~~Vl~EKP~a~~~~e 115 (376)
++++++ .|+|+.|.|... ..++..+..+......+++--.-+..+.+
T Consensus 79 ~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~ 127 (287)
T PRK08293 79 AEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ 127 (287)
T ss_pred HHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence 888866 899999999773 33433333221112345555444445544
No 122
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=97.54 E-value=0.00097 Score=60.43 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=68.4
Q ss_pred CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
+.-||.|.| +|..|..|.+.+... +-++++-+.+... ..+ -+|++ +|.+++|+.+.+++|+++|++|
T Consensus 11 ~~~~v~~~gi~~~~~~~~~~~~~~y---gt~~~~gV~p~~~----~~~---i~G~~--~y~sv~dlp~~~~~DlAvI~vP 78 (300)
T PLN00125 11 KNTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKG----GTE---HLGLP--VFNTVAEAKAETKANASVIYVP 78 (300)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHHh---CCcEEEEECCCCC----Cce---EcCee--ccCCHHHHhhccCCCEEEEecC
Confidence 357999999 699999999999888 7778887777631 001 24776 9999999997656899999999
Q ss_pred CCccHHHHHHHHcCCCCCe
Q 017143 84 NMTHYQILMDIINHPKPHH 102 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~ 102 (376)
...=.+.+.+|++ +|.+
T Consensus 79 a~~v~~al~e~~~--~Gvk 95 (300)
T PLN00125 79 PPFAAAAILEAME--AELD 95 (300)
T ss_pred HHHHHHHHHHHHH--cCCC
Confidence 9999999999999 6665
No 123
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.54 E-value=0.0012 Score=61.05 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=64.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH-HHhcCC------------CCCccCCHHHHhhC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL-ANAFDW------------PLKVFPGHQELLDS 72 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~l~~ 72 (376)
..||+|||+|.+|......+... +.+|+ ++|++++..+++.+. ....+. .+...+++++++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~---g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK---GLQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG 79 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC---CCeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc
Confidence 35799999999999988888764 67766 578988866554431 111121 01345678887765
Q ss_pred CCCCEEEEeCCCCcc--HHHHHHHHcCCCCCeEEEecCCCCCHHH
Q 017143 73 GLCDVVVVSTPNMTH--YQILMDIINHPKPHHVLVEKPLCTTVAD 115 (376)
Q Consensus 73 ~~~D~V~i~t~~~~h--~~~~~~al~~~~g~~Vl~EKP~a~~~~e 115 (376)
.|+|++|+|+..+ ..+..+.-....+..+++--..+.+..+
T Consensus 80 --aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~ 122 (311)
T PRK06130 80 --ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITA 122 (311)
T ss_pred --CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence 8999999999864 2333222110023446655555555443
No 124
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.53 E-value=0.00031 Score=56.90 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=76.8
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
.-+|+|||.|..|+.|..+|+.. +++|+ |..+... +..+.+++-|+. + .+++|+.+. .|+|++.+|+.
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS---G~~V~-Vglr~~s---~s~~~A~~~Gf~--v-~~~~eAv~~--aDvV~~L~PD~ 71 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS---GVNVI-VGLREGS---ASWEKAKADGFE--V-MSVAEAVKK--ADVVMLLLPDE 71 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC---C-EEE-EEE-TTC---HHHHHHHHTT-E--C-CEHHHHHHC---SEEEE-S-HH
T ss_pred CCEEEEECCChHHHHHHHHHHhC---CCCEE-EEecCCC---cCHHHHHHCCCe--e-ccHHHHHhh--CCEEEEeCChH
Confidence 35899999999999999888875 88877 4444443 233445566875 4 468889887 89999999999
Q ss_pred ccHHHH----HHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143 86 THYQIL----MDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV 161 (376)
Q Consensus 86 ~h~~~~----~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~ 161 (376)
.|.++- ...|+ .|+.+..--.+... -.+++- ..++.+.+-...--.+.+ |+...+|. |-+-.+
T Consensus 72 ~q~~vy~~~I~p~l~--~G~~L~fahGfni~----~~~i~p---p~~vdV~mvAPKgpG~~v---R~~y~~G~-Gvp~l~ 138 (165)
T PF07991_consen 72 VQPEVYEEEIAPNLK--PGATLVFAHGFNIH----YGLIKP---PKDVDVIMVAPKGPGHLV---RREYVEGR-GVPALI 138 (165)
T ss_dssp HHHHHHHHHHHHHS---TT-EEEESSSHHHH----CTTS------TTSEEEEEEESSSCHHH---HHHHHCCT-S--EEE
T ss_pred HHHHHHHHHHHhhCC--CCCEEEeCCcchhh----cCcccC---CCCCeEEEEecCCCChHH---HHHHHcCC-CceEEE
Confidence 997775 34578 67666655444321 112222 235555555555444444 45555555 666666
Q ss_pred EE
Q 017143 162 AI 163 (376)
Q Consensus 162 ~~ 163 (376)
.+
T Consensus 139 AV 140 (165)
T PF07991_consen 139 AV 140 (165)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 125
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=97.52 E-value=0.0006 Score=61.90 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=54.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
--+|||||+|.+|+.++..++.. +++|++ +++... ..+.+...|+. . .+++++++. .|+|++++|..
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~---G~~ViV-~~r~~~----s~~~A~~~G~~--v-~sl~Eaak~--ADVV~llLPd~ 82 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDS---GVEVVV-GVRPGK----SFEVAKADGFE--V-MSVSEAVRT--AQVVQMLLPDE 82 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC---cCEEEE-EECcch----hhHHHHHcCCE--E-CCHHHHHhc--CCEEEEeCCCh
Confidence 36899999999999999998875 899875 444322 33344555754 3 389999988 79999999987
Q ss_pred ccHHHH
Q 017143 86 THYQIL 91 (376)
Q Consensus 86 ~h~~~~ 91 (376)
.+..+.
T Consensus 83 ~t~~V~ 88 (335)
T PRK13403 83 QQAHVY 88 (335)
T ss_pred HHHHHH
Confidence 665554
No 126
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.51 E-value=0.00056 Score=63.50 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=50.8
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-------C--C--CCCccCCHHHHhhCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-------D--W--PLKVFPGHQELLDSGLC 75 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-------~--~--~~~~~~~~~~~l~~~~~ 75 (376)
+||+|||+|.+|......+.+. +.++ .+++++++. .+++.++. + . .+...++.++.++. .
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~---g~~V-~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 72 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN---GHDV-TLWARDPEQ---AAEINADRENPRYLPGIKLPDNLRATTDLAEALAD--A 72 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEE-EEEECCHHH---HHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC--C
Confidence 5899999999999988888774 6775 578998874 44444321 0 0 12345678877765 8
Q ss_pred CEEEEeCCCCc
Q 017143 76 DVVVVSTPNMT 86 (376)
Q Consensus 76 D~V~i~t~~~~ 86 (376)
|+|++|+|+..
T Consensus 73 D~vi~~v~~~~ 83 (325)
T PRK00094 73 DLILVAVPSQA 83 (325)
T ss_pred CEEEEeCCHHH
Confidence 99999999853
No 127
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=97.50 E-value=0.0098 Score=55.27 Aligned_cols=208 Identities=14% Similarity=0.092 Sum_probs=130.3
Q ss_pred EEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---------------------CCcc---CC
Q 017143 11 IIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---------------------LKVF---PG 65 (376)
Q Consensus 11 iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---------------------~~~~---~~ 65 (376)
|+| +|.+|+.-+.-+++++ ..|+|++++..+.- +.+.+.+++|.-. ++++ +.
T Consensus 1 ILGsTGSIG~qtLdVi~~~~-d~f~v~~Laa~~n~--~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~ 77 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHP-EHFKVVGLTANYNI--ELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDG 77 (383)
T ss_pred CCccccHHHHHHHHHHHhCc-cccEEEEEECCCCH--HHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHH
Confidence 467 5999999888887763 57999999875543 2455555554322 0111 13
Q ss_pred HHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHH-HHHHHHHHhCCCeEEEEeeccccCHHHH
Q 017143 66 HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADC-KKVVDAARKRPDILVQVGLEYRYMPPVA 144 (376)
Q Consensus 66 ~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~-~~l~~~a~~~~~~~~~v~~~~r~~p~~~ 144 (376)
+.++.+.+++|.|+.+..-..=......|++ +||.|.+.--= ++--+ .-+.+.++++ +..+..- +....
T Consensus 78 l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~--~gk~iaLANKE--SLV~aG~li~~~~~~~-~~~iiPV-----DSEHs 147 (383)
T PRK12464 78 LIAVATHPGSDLVLSSVVGAAGLLPTIEALK--AKKDIALANKE--TLVAAGHIVTDLAKQN-GCRLIPV-----DSEHS 147 (383)
T ss_pred HHHHHcCCCCCEEEEhhhcHhhHHHHHHHHH--CCCcEEEechh--hHhhhHHHHHHHHHHc-CCeEEee-----chhHH
Confidence 4556666779999999998888899999999 88888774331 22223 3344566444 5443332 34455
Q ss_pred HHHHHHHcCCCCceEEEEEeeccCCcccc---------------cCccccccccC--CcccccccccHHHHHHHHhCCCC
Q 017143 145 KLIQIVKSGSIGQVKMVAIREHRFPFLVK---------------VNDWNRFNENT--GGTLVEKCCHFFDLMRLFVGSNP 207 (376)
Q Consensus 145 ~~k~~i~~g~iG~i~~~~~~~~~~~~~~~---------------~~~w~~~~~~~--gG~l~d~g~H~ld~~~~l~G~~~ 207 (376)
.+-|.++.+...+|..+..+-..+++... -++|..-++-+ .-.|++-|--.+ =+.||||-++
T Consensus 148 AIfQ~L~~~~~~~v~kiiLTASGGpFr~~~~e~l~~vT~~~AL~HP~W~MG~KITIDSATmmNKglEvI-EA~~LF~i~~ 226 (383)
T PRK12464 148 AIFQCLNGENNKEIDKLIVTASGGAFRDKTREEMATLTAKDALKHPNWLMGAKLTIDSATLMNKGFEVI-EAHWLFDIPY 226 (383)
T ss_pred HHHHHccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHH-HHHHHcCCCH
Confidence 56666665444557777776666665431 35776554422 334555543333 3578999777
Q ss_pred eEEEEecccccccCccccCCCCCcccccEEEEEEecCCcEE
Q 017143 208 MRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENGSRG 248 (376)
Q Consensus 208 ~~V~a~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~ 248 (376)
.++....+. ....+.+++|.||.+.
T Consensus 227 d~I~vvIHP----------------qSiVHsmVef~DGSv~ 251 (383)
T PRK12464 227 EKIDVLIHK----------------ESIIHSLVEFIDGSVL 251 (383)
T ss_pred HHeEEEECC----------------CCceeEEEEEcCccEE
Confidence 777776443 2458899999999664
No 128
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=97.50 E-value=0.0028 Score=56.43 Aligned_cols=130 Identities=9% Similarity=0.049 Sum_probs=88.1
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEE-eCCChhhHHHHHHHHHhcCCCC----CccCCHHHHhhCCCCC-EEE
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCI-ADPHLQSRQQALKLANAFDWPL----KVFPGHQELLDSGLCD-VVV 79 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v-~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~D-~V~ 79 (376)
+||.|.|+ |.||+..+.++.+ ++++|++. +|+..... ...++... ++++ ..+++++++++. .+| +++
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~~~~~~~~~~-~~~~~~g~-~v~v~~~~~~~~~l~~~~~~-~~d~VvI 74 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPTSFGGEEEAE-NEAEVAGK-EILLHGPSEREARIGEVFAK-YPELICI 74 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEeeEcccccccc-chhhhccc-ceeeeccccccccHHHHHhh-cCCEEEE
Confidence 58999996 8999998888665 59999998 77543211 12223221 4441 228999999965 388 889
Q ss_pred EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143 80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK 151 (376)
Q Consensus 80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~ 151 (376)
-.|.|+.-.+.+..|++ +|+++.+=-.. .+.++.++|.++ .++.+.+..| |+-.+..+.++++
T Consensus 75 DFT~P~~~~~n~~~~~~--~gv~~ViGTTG-~~~~~~~~l~~~----~~i~~l~apN--fSiGv~ll~~~~~ 137 (275)
T TIGR02130 75 DYTHPSAVNDNAAFYGK--HGIPFVMGTTG-GDREALAKLVAD----AKHPAVIAPN--MAKQIVAFLAAIE 137 (275)
T ss_pred ECCChHHHHHHHHHHHH--CCCCEEEcCCC-CCHHHHHHHHHh----cCCCEEEECc--ccHHHHHHHHHHH
Confidence 99999999999999999 88998875553 566676666433 2455554444 4445555555553
No 129
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.49 E-value=0.00038 Score=63.52 Aligned_cols=126 Identities=16% Similarity=0.115 Sum_probs=81.2
Q ss_pred CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
+|+|||||| +|..|...++.|..+ |.++++++...... . . .+.++.++ ++|+|+.|+|
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~h--p~~~l~~~~s~~~~--------------~--~-~~~~~~~~--~~DvvFlalp 59 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGR--SDIELLSIPEAKRK--------------D--A-AARRELLN--AADVAILCLP 59 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcC--CCeEEEEEecCCCC--------------c--c-cCchhhhc--CCCEEEECCC
Confidence 369999999 588999999999999 89999999754322 1 1 22334444 3899999999
Q ss_pred CCccHHHHHHHHcCCCCCeEEE---------ecCCCCCHHHHH-HHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143 84 NMTHYQILMDIINHPKPHHVLV---------EKPLCTTVADCK-KVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG 153 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~---------EKP~a~~~~e~~-~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g 153 (376)
+....+++.++.+ +|+.|+= +-|... .|.. +-.+.. +..+ +..+..+.-......++-+++.|
T Consensus 60 ~~~s~~~~~~~~~--~g~~VIDlSadfRl~~~~~ygl--PEvn~~~~~~i-~~~~--~IanPgC~~Ta~~laL~PL~~~~ 132 (313)
T PRK11863 60 DDAAREAVALIDN--PATRVIDASTAHRTAPGWVYGF--PELAPGQRERI-AAAK--RVANPGCYPTGAIALLRPLVDAG 132 (313)
T ss_pred HHHHHHHHHHHHh--CCCEEEECChhhhcCCCCeEEc--CccCHHHHHHh-hcCC--eEEcCCcHHHHHHHHHHHHHHcC
Confidence 9999999999988 7765542 222222 1110 011122 1223 33333333345666788888888
Q ss_pred CCCce
Q 017143 154 SIGQV 158 (376)
Q Consensus 154 ~iG~i 158 (376)
.+-++
T Consensus 133 li~~~ 137 (313)
T PRK11863 133 LLPAD 137 (313)
T ss_pred CcccC
Confidence 77553
No 130
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.48 E-value=0.0032 Score=58.30 Aligned_cols=110 Identities=23% Similarity=0.250 Sum_probs=70.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH------------HHHHhcCCC--CCccCCHHHHhhC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL------------KLANAFDWP--LKVFPGHQELLDS 72 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~------------~~~~~~~~~--~~~~~~~~~~l~~ 72 (376)
|||.|||+|..|......++++ +-+|++ +|.++++.+... ++.++..-. .+.++|+++.+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~---GHeVv~-vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL---GHEVVC-VDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc---CCeEEE-EeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc
Confidence 6899999999999888888887 778886 699998654332 222221111 3456788888877
Q ss_pred CCCCEEEEeCCCCcc------HHH----HHHHHcCCCCCeEEEec---CCCCCHHHHHHHHHHH
Q 017143 73 GLCDVVVVSTPNMTH------YQI----LMDIINHPKPHHVLVEK---PLCTTVADCKKVVDAA 123 (376)
Q Consensus 73 ~~~D~V~i~t~~~~h------~~~----~~~al~~~~g~~Vl~EK---P~a~~~~e~~~l~~~a 123 (376)
.|+++||+|+... ..+ +....+.-.+.||++-| |+. +.++.++.+...
T Consensus 77 --adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG-t~~~v~~~i~~~ 137 (414)
T COG1004 77 --ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG-TTEEVRAKIREE 137 (414)
T ss_pred --CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC-chHHHHHHHHhh
Confidence 6888888775432 222 22222222456999999 444 555555555555
No 131
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.47 E-value=0.00077 Score=58.81 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=60.9
Q ss_pred eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-------cCCCCCc-cCCHHHHhhCCCCCE
Q 017143 7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-------FDWPLKV-FPGHQELLDSGLCDV 77 (376)
Q Consensus 7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~l~~~~~D~ 77 (376)
|||+||| +|.+|......+.+. +.+|+ ++++++++. ++++++ .++.... ..+..+.+++ .|+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~---G~~V~-v~~r~~~~~---~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~--aDv 71 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA---GNKII-IGSRDLEKA---EEAAAKALEELGHGGSDIKVTGADNAEAAKR--ADV 71 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC---CCEEE-EEEcCHHHH---HHHHHHHHhhccccCCCceEEEeChHHHHhc--CCE
Confidence 4799997 899999988888774 56765 568888743 333332 1322111 2355667765 799
Q ss_pred EEEeCCCCccHHHHHHHHcCCCCC-eEEEecCCCC
Q 017143 78 VVVSTPNMTHYQILMDIINHPKPH-HVLVEKPLCT 111 (376)
Q Consensus 78 V~i~t~~~~h~~~~~~al~~~~g~-~Vl~EKP~a~ 111 (376)
|++++|++...+.+.+......++ -|-|-+|+..
T Consensus 72 Vilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 72 VILAVPWDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred EEEECCHHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 999999998877765542211233 2335567653
No 132
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00049 Score=62.56 Aligned_cols=91 Identities=19% Similarity=0.336 Sum_probs=62.5
Q ss_pred CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CC--C-CccC--CHHHHhhCCCCCE
Q 017143 5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WP--L-KVFP--GHQELLDSGLCDV 77 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~--~-~~~~--~~~~~l~~~~~D~ 77 (376)
+|+||+|||. |..|...++.|..+ |++++..+..+.. +-+.+.+.+. .. . ..+. +.+++ ...++|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H--p~ve~~~~ss~~~----~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~Dv 73 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRER----AGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDV 73 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC--CCeEEEEeechhh----cCCchHHhCcccccccccccccCChhhh-hcccCCE
Confidence 3699999995 88899999999999 9999666554431 2233333321 11 0 1111 33444 4445899
Q ss_pred EEEeCCCCccHHHHHHHHcCCCCCeEE
Q 017143 78 VVVSTPNMTHYQILMDIINHPKPHHVL 104 (376)
Q Consensus 78 V~i~t~~~~h~~~~~~al~~~~g~~Vl 104 (376)
|++|+|+..-.+++.+.++ .|..|+
T Consensus 74 vFlalPhg~s~~~v~~l~~--~g~~VI 98 (349)
T COG0002 74 VFLALPHGVSAELVPELLE--AGCKVI 98 (349)
T ss_pred EEEecCchhHHHHHHHHHh--CCCeEE
Confidence 9999999999999999998 777643
No 133
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.46 E-value=0.0014 Score=62.95 Aligned_cols=103 Identities=23% Similarity=0.387 Sum_probs=62.2
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---------------CCccCCHHH
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---------------LKVFPGHQE 68 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~ 68 (376)
-+++||+|||+|.+|..+...+++ +++|++ +|+++++ .+++.+ |.. ....++.+
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la~----~~~V~g-~D~~~~~---ve~l~~--G~~~~~e~~~~~l~~~g~l~~t~~~~- 72 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFGK----SRQVVG-FDVNKKR---ILELKN--GVDVNLETTEEELREARYLKFTSEIE- 72 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHhc----CCEEEE-EeCCHHH---HHHHHC--cCCCCCCCCHHHHHhhCCeeEEeCHH-
Confidence 346899999999999988777554 478764 8999984 444441 111 12233443
Q ss_pred HhhCCCCCEEEEeCCCCccH------HHHH-------HHHcCCCCCeEEEecCC--CCCHHHHHHHHH
Q 017143 69 LLDSGLCDVVVVSTPNMTHY------QILM-------DIINHPKPHHVLVEKPL--CTTVADCKKVVD 121 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h~------~~~~-------~al~~~~g~~Vl~EKP~--a~~~~e~~~l~~ 121 (376)
.+++ .|+++||.|+..+. +.+. +.++ .|.-|+.+.-+ .++.+-++.+.+
T Consensus 73 ~~~~--advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~--~g~lVI~~STv~pgtt~~~~~~~l~ 136 (425)
T PRK15182 73 KIKE--CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLN--RGDIVVYESTVYPGCTEEECVPILA 136 (425)
T ss_pred HHcC--CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcC--CCCEEEEecCCCCcchHHHHHHHHH
Confidence 4544 89999999987432 3333 2345 56666666533 333333444444
No 134
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=97.45 E-value=0.0013 Score=51.55 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=64.9
Q ss_pred EEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------------------CCccC
Q 017143 9 YGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------------------LKVFP 64 (376)
Q Consensus 9 v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------------------~~~~~ 64 (376)
|+|+| +|.+|+.-+.-+++++ +.|+|+++...+.- ++..+.+++|+.+ ++++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~--~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~ 77 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNI--EKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLS 77 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTH--HHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCH--HHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEe
Confidence 68999 5999999999888883 58999999875432 2444444444322 12222
Q ss_pred ---CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143 65 ---GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 65 ---~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
.+.++.+.+++|.|+.+..-..=......|++ +||.|.+
T Consensus 78 G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~--~gk~iaL 119 (129)
T PF02670_consen 78 GPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIK--AGKDIAL 119 (129)
T ss_dssp SHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHH--TTSEEEE
T ss_pred ChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHH--CCCeEEE
Confidence 24466666789999999999999999999999 8998875
No 135
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.44 E-value=0.0016 Score=59.94 Aligned_cols=111 Identities=23% Similarity=0.305 Sum_probs=68.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHhcCCC-----------CCccCCHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANAFDWP-----------LKVFPGHQ 67 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~~~~~-----------~~~~~~~~ 67 (376)
.+|+|||+|.||......+++. +.+|+ ++|++++..+.+.+ +. +.|.- +....+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~---G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~~~~~~~~~i~~~~~~~ 77 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA---GHEVR-LWDADPAAAAAAPAYIAGRLEDLA-AFDLLDGEAPDAVLARIRVTDSLA 77 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC---CCeeE-EEeCCHHHHHHHHHHHHHHHHHHH-HcCCCchhhHHHHhcCeEEECcHH
Confidence 4899999999999888888775 67766 68999875544332 11 12310 13567888
Q ss_pred HHhhCCCCCEEEEeCCCCccHHH-HHHHHc-CCCCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Q 017143 68 ELLDSGLCDVVVVSTPNMTHYQI-LMDIIN-HPKPHHVLVEKPLCTTVADCKKVVDAARKRPD 128 (376)
Q Consensus 68 ~~l~~~~~D~V~i~t~~~~h~~~-~~~al~-~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~ 128 (376)
+++++ .|+|+.++|....... +...++ ...+..+++ .+++.....++.+.+ ...+
T Consensus 78 ~a~~~--ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~---ssts~~~~~~la~~~-~~~~ 134 (308)
T PRK06129 78 DAVAD--ADYVQESAPENLELKRALFAELDALAPPHAILA---SSTSALLASAFTEHL-AGRE 134 (308)
T ss_pred HhhCC--CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE---EeCCCCCHHHHHHhc-CCcc
Confidence 88876 8999999998743222 222222 112333332 334444566677777 4444
No 136
>PLN02858 fructose-bisphosphate aldolase
Probab=97.44 E-value=0.0023 Score=69.94 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=80.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
--|||+||+|.||......|.+. +++|. +||++++ +++++++. |. ..+++..++.+. .|+|++|.|+.
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~---G~~v~-v~dr~~~---~~~~l~~~-Ga--~~~~s~~e~a~~--advVi~~l~~~ 71 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRS---GFKVQ-AFEISTP---LMEKFCEL-GG--HRCDSPAEAAKD--AAALVVVLSHP 71 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHC---CCeEE-EEcCCHH---HHHHHHHc-CC--eecCCHHHHHhc--CCEEEEEcCCh
Confidence 35799999999999998888774 78875 7999988 56666543 54 477899999987 89999999998
Q ss_pred ccHHHHH----HHHcCC-CCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143 86 THYQILM----DIINHP-KPHHVLVEKPLCTTVADCKKVVDAARKR 126 (376)
Q Consensus 86 ~h~~~~~----~al~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~ 126 (376)
.+.+-+. .++... .| .++++-- +.+++..+++.+.+.++
T Consensus 72 ~~v~~V~~g~~g~~~~l~~g-~iivd~S-Ti~p~~~~~la~~l~~~ 115 (1378)
T PLN02858 72 DQVDDVFFGDEGAAKGLQKG-AVILIRS-TILPLQLQKLEKKLTER 115 (1378)
T ss_pred HHHHHHHhchhhHHhcCCCc-CEEEECC-CCCHHHHHHHHHHHHhc
Confidence 8766554 122210 34 5777764 67888999998887444
No 137
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.43 E-value=0.0012 Score=55.84 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=60.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
|++++|+|+|.+|......+... +.+++....+.++ +.+..++..+..+. -.+.+++.+. .|+|+++.|..
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a---g~eV~igs~r~~~---~~~a~a~~l~~~i~-~~~~~dA~~~--aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA---GHEVIIGSSRGPK---ALAAAAAALGPLIT-GGSNEDAAAL--ADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC---CCeEEEecCCChh---HHHHHHHhhccccc-cCChHHHHhc--CCEEEEeccHH
Confidence 47899999999999999888885 7888866566665 33444555554322 2456777776 79999999988
Q ss_pred ccHHHHHHHH
Q 017143 86 THYQILMDII 95 (376)
Q Consensus 86 ~h~~~~~~al 95 (376)
.+...+.+.-
T Consensus 72 a~~~v~~~l~ 81 (211)
T COG2085 72 AIPDVLAELR 81 (211)
T ss_pred HHHhHHHHHH
Confidence 8888777665
No 138
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=97.43 E-value=0.0017 Score=52.77 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=31.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-Chh
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-HLQ 44 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-~~~ 44 (376)
+||||+|+|.||+.++..+... ++++++++.|+ +++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~ 37 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPE 37 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHH
Confidence 5899999999999999988876 89999999995 443
No 139
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.00094 Score=60.31 Aligned_cols=102 Identities=23% Similarity=0.222 Sum_probs=72.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCC-CcEEEEEeC-CChhhHHHHHHHHHhcC-C----------------CCCccCCH
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQ-GVSVVCIAD-PHLQSRQQALKLANAFD-W----------------PLKVFPGH 66 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~-~~~~~~v~d-~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~ 66 (376)
++||||-|.|.||+..++++... + +++++||-| .+++......+.-.-+| + .++++.+.
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~--~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALER--DGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhC--CCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecC
Confidence 48999999999999999998887 6 799999999 66663322222111011 0 01234444
Q ss_pred H-HHhhC--CCCCEEEEeCCCCccHHHHHHHHcCCCC--CeEEEecCCCC
Q 017143 67 Q-ELLDS--GLCDVVVVSTPNMTHYQILMDIINHPKP--HHVLVEKPLCT 111 (376)
Q Consensus 67 ~-~~l~~--~~~D~V~i~t~~~~h~~~~~~al~~~~g--~~Vl~EKP~a~ 111 (376)
+ +.|.. ..+|+|+=|||-....+-+.+-++ +| |-|++--|...
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~--agGaKkV~isap~~~ 126 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLK--AGGAKKVLISAPGKD 126 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHH--hcCCCEEEEcCCCCC
Confidence 4 55654 347899999999998888888888 54 89999888765
No 140
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.38 E-value=0.0048 Score=56.27 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=53.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH----H---hcC-CC----------CCccCCHHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA----N---AFD-WP----------LKVFPGHQE 68 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~----~---~~~-~~----------~~~~~~~~~ 68 (376)
-||+|||+|.||......+... +.+|+ ++|++++..+++.+.. . +.+ +. +...+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~---G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS---GFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKA 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC---CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHH
Confidence 3799999999999987777764 67766 6899998665543211 0 001 10 124678888
Q ss_pred HhhCCCCCEEEEeCCCCccH
Q 017143 69 LLDSGLCDVVVVSTPNMTHY 88 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h~ 88 (376)
.+++ .|+|+.|.|.....
T Consensus 78 ~~~~--aD~Vi~avpe~~~~ 95 (288)
T PRK09260 78 AVAD--ADLVIEAVPEKLEL 95 (288)
T ss_pred hhcC--CCEEEEeccCCHHH
Confidence 8876 89999999998653
No 141
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.38 E-value=0.0023 Score=60.31 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=66.7
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH 87 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h 87 (376)
+|+|||+|.||......+.+. +.++. +++++++...... +...++.....+++++++++ .|+|++|+|+..-
T Consensus 2 ~I~iIG~GliG~siA~~L~~~---G~~v~-i~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~--aDlVilavP~~~~ 73 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAA---GPDVF-IIGYDPSAAQLAR--ALGFGVIDELAADLQRAAAE--ADLIVLAVPVDAT 73 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhc---CCCeE-EEEeCCCHHHHHH--HhcCCCCcccccCHHHHhcC--CCEEEEeCCHHHH
Confidence 699999999999999888775 44443 4566655322221 23344432334677887765 8999999999765
Q ss_pred HHHHHHHHcC-CCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEee
Q 017143 88 YQILMDIINH-PKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135 (376)
Q Consensus 88 ~~~~~~al~~-~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~ 135 (376)
.+++.+.... -....|++. =.+....-.+.+.+.. .. +..+.-++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtD-v~SvK~~i~~~~~~~~-~~-~~~~ig~H 119 (359)
T PRK06545 74 AALLAELADLELKPGVIVTD-VGSVKGAILAEAEALL-GD-LIRFVGGH 119 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEe-CccccHHHHHHHHHhc-CC-CCeEEeeC
Confidence 5555444320 011234444 2233444444454442 22 34444444
No 142
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.37 E-value=0.0037 Score=61.51 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=53.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH----Hh-----------cCCCCCccCCHHHHhh
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA----NA-----------FDWPLKVFPGHQELLD 71 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~l~ 71 (376)
.||||||+|.||...+..+... +++|+ ++|++++..+...+.. +. .+ .+...++++++++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~---G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-~i~~~~~~~ea~~ 79 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA---GIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG-RLTFCASLAEAVA 79 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh-ceEeeCCHHHHhc
Confidence 4899999999999988888774 78865 7899988654332210 00 11 0235678888887
Q ss_pred CCCCCEEEEeCCCCcc
Q 017143 72 SGLCDVVVVSTPNMTH 87 (376)
Q Consensus 72 ~~~~D~V~i~t~~~~h 87 (376)
+ .|+|+.+.|+...
T Consensus 80 ~--aD~Vieavpe~~~ 93 (495)
T PRK07531 80 G--ADWIQESVPERLD 93 (495)
T ss_pred C--CCEEEEcCcCCHH
Confidence 6 8999999999864
No 143
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.36 E-value=0.00048 Score=53.48 Aligned_cols=101 Identities=22% Similarity=0.306 Sum_probs=64.6
Q ss_pred eEEEEeC----ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 8 KYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 8 ~v~iiG~----G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
+|+|||+ +.+|...+..+.+. +++++.|--...+ -.|+ +.|.+++| . -..+|+++|++|
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~---G~~v~~Vnp~~~~----------i~G~--~~y~sl~e-~-p~~iDlavv~~~ 64 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA---GYEVYPVNPKGGE----------ILGI--KCYPSLAE-I-PEPIDLAVVCVP 64 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT---T-EEEEESTTCSE----------ETTE--E-BSSGGG-C-SST-SEEEE-S-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC---CCEEEEECCCceE----------ECcE--EeeccccC-C-CCCCCEEEEEcC
Confidence 6999995 56788888888774 7898887433222 2365 49999998 3 235999999999
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEE
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQ 132 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~ 132 (376)
+..-.+++.+|.+.| -+.|++--- .+-.++.+.+++ .|+.+.
T Consensus 65 ~~~~~~~v~~~~~~g-~~~v~~~~g-----~~~~~~~~~a~~-~gi~vi 106 (116)
T PF13380_consen 65 PDKVPEIVDEAAALG-VKAVWLQPG-----AESEELIEAARE-AGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHHT--SEEEE-TT-----S--HHHHHHHHH-TT-EEE
T ss_pred HHHHHHHHHHHHHcC-CCEEEEEcc-----hHHHHHHHHHHH-cCCEEE
Confidence 999999999998843 244555433 556678888844 477654
No 144
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.35 E-value=0.00043 Score=64.11 Aligned_cols=88 Identities=7% Similarity=0.030 Sum_probs=59.7
Q ss_pred CceeEEEEeC-ChhhHHHHHHhh--hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH-HhhCCCCCEEEE
Q 017143 5 DTVKYGIIGM-GMMGREHFINLH--HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE-LLDSGLCDVVVV 80 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~--~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~D~V~i 80 (376)
+|+||+|+|+ |..|...+..|. .+ |.++++.+.+.+.. .+.+. ..+.+ ..+.+.++ -++ ++|+|+.
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~h--P~~~l~~v~s~~~a----G~~l~-~~~~~-l~~~~~~~~~~~--~vD~vFl 72 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDF--PVGTLHLLASSESA----GHSVP-FAGKN-LRVREVDSFDFS--QVQLAFF 72 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCC--CceEEEEEECcccC----CCeec-cCCcc-eEEeeCChHHhc--CCCEEEE
Confidence 4589999995 999999999998 45 89999998876432 11111 11111 12222221 133 4999999
Q ss_pred eCCCCccHHHHHHHHcCCCCCeEE
Q 017143 81 STPNMTHYQILMDIINHPKPHHVL 104 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~Vl 104 (376)
++|+....+++.++++ +|+-|+
T Consensus 73 a~p~~~s~~~v~~~~~--~G~~VI 94 (336)
T PRK05671 73 AAGAAVSRSFAEKARA--AGCSVI 94 (336)
T ss_pred cCCHHHHHHHHHHHHH--CCCeEE
Confidence 9999888899999999 776443
No 145
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.34 E-value=0.00036 Score=64.51 Aligned_cols=140 Identities=9% Similarity=0.060 Sum_probs=87.2
Q ss_pred CCceeEEEEeC-ChhhHHHHHHhhh--hcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143 4 NDTVKYGIIGM-GMMGREHFINLHH--LRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 4 ~~~~~v~iiG~-G~~g~~~~~~~~~--~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i 80 (376)
++++||||||+ |..|...++.|.+ + |.++|+.+.+.+.. .+.+. -.+.+ ..+++.++..- .++|+|+.
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~h--P~~~l~~laS~~sa----G~~~~-~~~~~-~~v~~~~~~~~-~~~Dvvf~ 72 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQF--PVGELYALASEESA----GETLR-FGGKS-VTVQDAAEFDW-SQAQLAFF 72 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCC--CceEEEEEEccCcC----CceEE-ECCcc-eEEEeCchhhc-cCCCEEEE
Confidence 35799999995 9999999999988 6 89999998765332 11111 00212 23335555421 24899999
Q ss_pred eCCCCccHHHHHHHHcCCCCCeEEE---------ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143 81 STPNMTHYQILMDIINHPKPHHVLV---------EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK 151 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~Vl~---------EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~ 151 (376)
|+|+....+++.++++ +|..|+= +.|+....--. +.++.. ++.+ +.-+.++.-......++-+++
T Consensus 73 a~p~~~s~~~~~~~~~--~g~~VIDlS~~fRl~~~vP~~lPEvn~-~~l~~i-~~~~--iIAnPgC~~t~~~laL~PL~~ 146 (336)
T PRK08040 73 VAGREASAAYAEEATN--AGCLVIDSSGLFALEPDVPLVVPEVNP-FVLADY-RNRN--IIAVADSLTSQLLTAIKPLID 146 (336)
T ss_pred CCCHHHHHHHHHHHHH--CCCEEEECChHhcCCCCCceEccccCH-HHHhhh-ccCC--EEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999 7765432 12332211111 111222 1223 445555555667777888888
Q ss_pred cCCCCce
Q 017143 152 SGSIGQV 158 (376)
Q Consensus 152 ~g~iG~i 158 (376)
.+.|-+|
T Consensus 147 ~~~i~~v 153 (336)
T PRK08040 147 QAGLSRL 153 (336)
T ss_pred hCCCeEE
Confidence 8777653
No 146
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.32 E-value=0.0015 Score=61.56 Aligned_cols=91 Identities=25% Similarity=0.311 Sum_probs=70.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC-
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN- 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~- 84 (376)
.-++.|||+|-||..-+..|... ++.-+.|+.|+.+ ++++++.++|..+..++++.+.|.+ .|+|+.+|..
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~---g~~~i~IaNRT~e---rA~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~ 249 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEK---GVKKITIANRTLE---RAEELAKKLGAEAVALEELLEALAE--ADVVISSTSAP 249 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhC---CCCEEEEEcCCHH---HHHHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCC
Confidence 46799999999999888778775 7777889999888 8999999999554455666666665 8999999763
Q ss_pred --CccHHHHHHHHcCCCCCe-EEEe
Q 017143 85 --MTHYQILMDIINHPKPHH-VLVE 106 (376)
Q Consensus 85 --~~h~~~~~~al~~~~g~~-Vl~E 106 (376)
-.....+..+++ ..++ ++++
T Consensus 250 ~~ii~~~~ve~a~~--~r~~~livD 272 (414)
T COG0373 250 HPIITREMVERALK--IRKRLLIVD 272 (414)
T ss_pred ccccCHHHHHHHHh--cccCeEEEE
Confidence 255677778877 5566 5553
No 147
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.30 E-value=0.00087 Score=62.81 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=60.7
Q ss_pred CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC------C----CCcc--CCHHHHhh
Q 017143 5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW------P----LKVF--PGHQELLD 71 (376)
Q Consensus 5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~----~~~~--~~~~~~l~ 71 (376)
+++||+|+| +|.+|...+..+..+ +.++|+++. .+++.. .+.+..-+++ + ...+ .+.+++ .
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~-~s~~~~--G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 75 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANH--PWFEVTALA-ASERSA--GKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D 75 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEE-cChhhc--CCcccccccccccccccccccceEEEeCCHHHh-c
Confidence 369999998 799999999999888 899999982 222211 1111111111 0 0011 133333 3
Q ss_pred CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143 72 SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 72 ~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
++|+|+.++|+..+.+++.++.+ +|+.|+.
T Consensus 76 --~~DvVf~a~p~~~s~~~~~~~~~--~G~~vID 105 (349)
T PRK08664 76 --DVDIVFSALPSDVAGEVEEEFAK--AGKPVFS 105 (349)
T ss_pred --CCCEEEEeCChhHHHHHHHHHHH--CCCEEEE
Confidence 48999999999999999988888 7777654
No 148
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.28 E-value=0.0058 Score=55.54 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=53.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH--------HHHHhcCCC----------CCccCCHH
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL--------KLANAFDWP----------LKVFPGHQ 67 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--------~~~~~~~~~----------~~~~~~~~ 67 (376)
..||+|||+|.+|......++.. +.+|+ ++|++++..+++. ++.++..+. +...++++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~---g~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 78 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA---GYDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD 78 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC---CCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH
Confidence 35899999999999888888765 67766 5799988664332 222221111 12456776
Q ss_pred HHhhCCCCCEEEEeCCCCcc--HHHHHH
Q 017143 68 ELLDSGLCDVVVVSTPNMTH--YQILMD 93 (376)
Q Consensus 68 ~~l~~~~~D~V~i~t~~~~h--~~~~~~ 93 (376)
+ +++ .|+|++|.|++.. .++..+
T Consensus 79 ~-~~~--aDlVi~av~e~~~~k~~~~~~ 103 (282)
T PRK05808 79 D-LKD--ADLVIEAATENMDLKKKIFAQ 103 (282)
T ss_pred H-hcc--CCeeeecccccHHHHHHHHHH
Confidence 5 444 8999999998655 344444
No 149
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.27 E-value=0.0032 Score=59.76 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=46.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH------------HHHhcCCCCCccCCHHHHhhCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK------------LANAFDWPLKVFPGHQELLDSGL 74 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~ 74 (376)
|||+|||+|.+|......++ . +.+|+ ++|+++++.+...+ +..+.+.......+..++..+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~---G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~-- 73 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q---NHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD-- 73 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h---CCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC--
Confidence 37999999999998775544 3 57766 68999986544432 000112111222345566654
Q ss_pred CCEEEEeCCCC
Q 017143 75 CDVVVVSTPNM 85 (376)
Q Consensus 75 ~D~V~i~t~~~ 85 (376)
.|+|++|+|+.
T Consensus 74 ad~vii~Vpt~ 84 (388)
T PRK15057 74 ADYVIIATPTD 84 (388)
T ss_pred CCEEEEeCCCC
Confidence 89999999976
No 150
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.26 E-value=0.0074 Score=58.66 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=48.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH------------HHHHh-cCCCCCccCCHHHHhhC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL------------KLANA-FDWPLKVFPGHQELLDS 72 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~l~~ 72 (376)
++||+|||+|.+|....-.|+... .+++++++ |.++++.+... ++..+ .+-.....+++++.+.+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKC-PDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC-CCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc
Confidence 368999999999998888787751 36888864 89888544321 11111 01011244566666655
Q ss_pred CCCCEEEEeCCC
Q 017143 73 GLCDVVVVSTPN 84 (376)
Q Consensus 73 ~~~D~V~i~t~~ 84 (376)
.|+++||.|+
T Consensus 79 --advi~I~V~T 88 (473)
T PLN02353 79 --ADIVFVSVNT 88 (473)
T ss_pred --CCEEEEEeCC
Confidence 7988888764
No 151
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=97.25 E-value=0.0011 Score=53.90 Aligned_cols=100 Identities=21% Similarity=0.217 Sum_probs=67.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-------CC--------------c--c
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-------LK--------------V--F 63 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-------~~--------------~--~ 63 (376)
+||||-|.|+||+..++++... ++++|++|.|+.++.. ...- .-+|... +. + .
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~--~~~evvaInd~~~~~~-~~a~-LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~ 76 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQ--PDIEVVAINDPAPDPE-YLAY-LLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEE 76 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTS--TTEEEEEEEESSSSHH-HHHH-HHHEETTTESGSSHEEEETTEEEETTEEEEEEHT
T ss_pred CEEEEECCCcccHHHHHhhccc--ceEEEEEEecccccch-hhhh-hhhccccccceecccccccceeEeecccccchhh
Confidence 6999999999999999998876 8999999999984421 1222 2223210 00 0 0
Q ss_pred CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143 64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCT 111 (376)
Q Consensus 64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~ 111 (376)
.+.+++-. ...+|+|+=||+.....+-+..-+++| -|-|++--|...
T Consensus 77 ~dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~G-akkViisap~~~ 124 (151)
T PF00044_consen 77 RDPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAG-AKKVIISAPSKD 124 (151)
T ss_dssp SSGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTT-ESEEEESSS-SS
T ss_pred hhhcccccccccccEEEeccccceeccccccccccc-ccceeecccccc
Confidence 11111111 124899999999999888888888865 477998888754
No 152
>PLN03139 formate dehydrogenase; Provisional
Probab=97.25 E-value=0.0011 Score=62.35 Aligned_cols=70 Identities=23% Similarity=0.340 Sum_probs=52.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.+|||||+|.||+..+..++.. +.+|.+ +|++..+. +...+.|+. .++++++++.+ .|+|++++|..
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af---G~~V~~-~d~~~~~~----~~~~~~g~~--~~~~l~ell~~--sDvV~l~lPlt 266 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF---NCNLLY-HDRLKMDP----ELEKETGAK--FEEDLDAMLPK--CDVVVINTPLT 266 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC---CCEEEE-ECCCCcch----hhHhhcCce--ecCCHHHHHhh--CCEEEEeCCCC
Confidence 35899999999999999888876 888764 78875321 222345643 56799999977 89999999965
Q ss_pred cc
Q 017143 86 TH 87 (376)
Q Consensus 86 ~h 87 (376)
..
T Consensus 267 ~~ 268 (386)
T PLN03139 267 EK 268 (386)
T ss_pred HH
Confidence 43
No 153
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=97.22 E-value=0.0018 Score=56.89 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
+.-|+.+-| +|..|..|...+... +.++++-+.+..- .+. -.++| +|++.+|+++....|+.+|..|
T Consensus 7 k~tkvivqGitg~~gtfh~~~~l~y---Gt~~V~GvtPgkg----G~~---~~g~P--Vf~tV~EA~~~~~a~~svI~Vp 74 (293)
T COG0074 7 KDTKVIVQGITGKQGTFHTEQMLAY---GTKIVGGVTPGKG----GQT---ILGLP--VFNTVEEAVKETGANASVIFVP 74 (293)
T ss_pred CCCeEEEeccccccchHHHHHHHHh---CCceeecccCCCC----ceE---EcCcc--HHHHHHHHHHhhCCCEEEEecC
Confidence 457899999 588999999988887 7778877766543 121 23666 9999999999988999999999
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY 137 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~ 137 (376)
+..-.+.+++|++ +|...++==-=...+.|..++.+.++++ + ..++|.++
T Consensus 75 ~~~aadai~EAid--a~i~liv~ITEgIP~~D~~~~~~~a~~~-g-~~iiGPnc 124 (293)
T COG0074 75 PPFAADAILEAID--AGIKLVVIITEGIPVLDMLELKRYAREK-G-TRLIGPNC 124 (293)
T ss_pred cHHHHHHHHHHHh--CCCcEEEEEeCCCCHHHHHHHHHHHHhc-C-CEEECCCC
Confidence 9999999999999 6555443333356788999999999666 5 44455443
No 154
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=97.21 E-value=0.0017 Score=58.93 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=80.7
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
.||+|+|. |..|...++.|..+ |+++++.+.+... +. . .+.++++++ +|+|+.|+|+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~~~--------------~~--~-~~~~~~~~~--~D~vFlalp~~ 60 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPDRR--------------KD--A-AERAKLLNA--ADVAILCLPDD 60 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecccc--------------cC--c-CCHhHhhcC--CCEEEECCCHH
Confidence 58999995 88999999999999 9999999986532 11 1 134566654 99999999999
Q ss_pred ccHHHHHHHHcCCCCCeEEE---------ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143 86 THYQILMDIINHPKPHHVLV---------EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~---------EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG 156 (376)
...+++.++.+ +|+.|+= +-|.....--.. -.+.. +..+ +..+..+.-......++-+++.|.+-
T Consensus 61 ~s~~~~~~~~~--~g~~VIDlSadfRl~~~~~yglPEln~~-~~~~i-~~a~--lIAnPgC~aTa~~LaL~PL~~~~li~ 134 (310)
T TIGR01851 61 AAREAVSLVDN--PNTCIIDASTAYRTADDWAYGFPELAPG-QREKI-RNSK--RIANPGCYPTGFIALMRPLVEAGILP 134 (310)
T ss_pred HHHHHHHHHHh--CCCEEEECChHHhCCCCCeEEccccCHH-HHHhh-ccCC--EEECCCCHHHHHHHHHHHHHHcCCcc
Confidence 99999998888 7765542 122222111001 11111 1122 33333333345666788888888876
Q ss_pred ce
Q 017143 157 QV 158 (376)
Q Consensus 157 ~i 158 (376)
++
T Consensus 135 ~~ 136 (310)
T TIGR01851 135 AD 136 (310)
T ss_pred cc
Confidence 54
No 155
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.20 E-value=0.0072 Score=55.04 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=75.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-----c--CCC----CCccCCHHHHhhCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-----F--DWP----LKVFPGHQELLDSGL 74 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-----~--~~~----~~~~~~~~~~l~~~~ 74 (376)
++||+|||.|.||......+.++ +.+ |-+|.++++- ..++-.. | |+. +..++|+++++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n---g~~-V~lw~r~~~~---~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~-- 71 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN---GHE-VRLWGRDEEI---VAEINETRENPKYLPGILLPPNLKATTDLAEALDG-- 71 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc---CCe-eEEEecCHHH---HHHHHhcCcCccccCCccCCcccccccCHHHHHhc--
Confidence 46899999999999888878775 444 5588998884 3344332 1 222 3568899999987
Q ss_pred CCEEEEeCCCCccHHHHHHH---HcCCCCCeEEEecCCCCC-HHHHHHHHHHH
Q 017143 75 CDVVVVSTPNMTHYQILMDI---INHPKPHHVLVEKPLCTT-VADCKKVVDAA 123 (376)
Q Consensus 75 ~D~V~i~t~~~~h~~~~~~a---l~~~~g~~Vl~EKP~a~~-~~e~~~l~~~a 123 (376)
.|+|++++|.+...+.+.+. ++. .-+-|.|-|=+..+ ..-..++++..
T Consensus 72 ad~iv~avPs~~~r~v~~~l~~~l~~-~~~iv~~sKGie~~t~~l~seii~e~ 123 (329)
T COG0240 72 ADIIVIAVPSQALREVLRQLKPLLLK-DAIIVSATKGLEPETGRLLSEIIEEE 123 (329)
T ss_pred CCEEEEECChHHHHHHHHHHhhhccC-CCeEEEEeccccCCCcchHHHHHHHH
Confidence 89999999999998888874 332 34568888877653 33333344333
No 156
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.17 E-value=0.0011 Score=55.90 Aligned_cols=67 Identities=28% Similarity=0.414 Sum_probs=48.8
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.+|||||+|.+|+..+..++.. +.+|++ +|++..... .....++ .+.+++++++. .|+|+++.|-.
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~-~d~~~~~~~----~~~~~~~---~~~~l~ell~~--aDiv~~~~plt 102 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAF---GMRVIG-YDRSPKPEE----GADEFGV---EYVSLDELLAQ--ADIVSLHLPLT 102 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHT---T-EEEE-EESSCHHHH----HHHHTTE---EESSHHHHHHH---SEEEE-SSSS
T ss_pred CCEEEEEEEcCCcCeEeeeeecC---CceeEE-ecccCChhh----hcccccc---eeeehhhhcch--hhhhhhhhccc
Confidence 46899999999999999888887 888775 677776321 1223343 46799999998 89999999943
No 157
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.16 E-value=0.0057 Score=52.44 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=69.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
..+|+|+|+|.+|......|.+. +.+|+ ++|++++ +.+++.+.++.. ..+ .++++.. ++|+++-|+...
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~---G~~Vv-v~D~~~~---~~~~~~~~~g~~--~v~-~~~l~~~-~~Dv~vp~A~~~ 96 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEE---GAKLI-VADINEE---AVARAAELFGAT--VVA-PEEIYSV-DADVFAPCALGG 96 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EEcCCHH---HHHHHHHHcCCE--EEc-chhhccc-cCCEEEeccccc
Confidence 46899999999999888888775 78988 8899887 455666666643 333 3666664 599998666543
Q ss_pred -ccHHHHHHHHcCCCCCeEEEecCCCCCH-HHHHHHHHHHHhCCCeEEEE
Q 017143 86 -THYQILMDIINHPKPHHVLVEKPLCTTV-ADCKKVVDAARKRPDILVQV 133 (376)
Q Consensus 86 -~h~~~~~~al~~~~g~~Vl~EKP~a~~~-~e~~~l~~~a~~~~~~~~~v 133 (376)
.+.+.+ +.|+ ..+++|+--.... .++.++++ ++ |+.+..
T Consensus 97 ~I~~~~~-~~l~----~~~v~~~AN~~~~~~~~~~~L~---~~-Gi~~~P 137 (200)
T cd01075 97 VINDDTI-PQLK----AKAIAGAANNQLADPRHGQMLH---ER-GILYAP 137 (200)
T ss_pred ccCHHHH-HHcC----CCEEEECCcCccCCHhHHHHHH---HC-CCEEeC
Confidence 333333 4444 3478887544333 45544443 33 555543
No 158
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.16 E-value=0.0015 Score=58.52 Aligned_cols=98 Identities=14% Similarity=0.271 Sum_probs=60.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
.+||+|||+|.||...+..+.+... ..-+++ ++++++++ .++ ....+.++++.+ .|+|++|+|+
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~~~----------~~~--~~~~~~~~~~~~--~D~Vilavkp 67 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIY-YHTPSKKN----------TPF--VYLQSNEELAKT--CDIIVLAVKP 67 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEE-EECCChhc----------CCe--EEeCChHHHHHh--CCEEEEEeCH
Confidence 4689999999999998888876510 112344 56776542 122 245677777765 7999999998
Q ss_pred CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143 85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV 119 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l 119 (376)
+.-.+++.+....-.++.|++--. ..+.+..+++
T Consensus 68 ~~~~~vl~~i~~~l~~~~iIS~~a-Gi~~~~l~~~ 101 (260)
T PTZ00431 68 DLAGKVLLEIKPYLGSKLLISICG-GLNLKTLEEM 101 (260)
T ss_pred HHHHHHHHHHHhhccCCEEEEEeC-CccHHHHHHH
Confidence 876666655432101244444333 3345555544
No 159
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.13 E-value=0.0017 Score=58.40 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=53.7
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
.+++|||||.|.+|+.....+-.. +..|. +|||++- ...+++||.. .|+.+.++.++. +|.|+.||.
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~a---Gh~li-~hsRsdy-----ssaa~~yg~~--~ft~lhdlcerh-pDvvLlcts 117 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDA---GHGLI-CHSRSDY-----SSAAEKYGSA--KFTLLHDLCERH-PDVVLLCTS 117 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhc---CceeE-ecCcchh-----HHHHHHhccc--ccccHHHHHhcC-CCEEEEEeh
Confidence 368999999999999988877775 77766 5787652 3456688864 899999988875 999999986
No 160
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.0091 Score=51.34 Aligned_cols=110 Identities=20% Similarity=0.196 Sum_probs=73.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~t~~~ 85 (376)
++|++||+|.||...+..+.+. +.++|+ +|++++..+ ++ ..++. ...+|++++++. +.|.+|.+-.|
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~---ghdvV~-yD~n~~av~---~~-~~~ga--~~a~sl~el~~~L~~pr~vWlMvP-- 68 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG---GHDVVG-YDVNQTAVE---EL-KDEGA--TGAASLDELVAKLSAPRIVWLMVP-- 68 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC---CCeEEE-EcCCHHHHH---HH-HhcCC--ccccCHHHHHHhcCCCcEEEEEcc--
Confidence 5799999999999999888885 889885 899997433 32 24453 467888888876 33455555554
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCC-CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLC-TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG 153 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a-~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g 153 (376)
.+ .+-+-.++|.... +. |=.+.-|=|..|....++.+++-+.|
T Consensus 69 -----------------------ag~it~~vi~~la~~L-~~-GDivIDGGNS~y~Ds~rr~~~l~~kg 112 (300)
T COG1023 69 -----------------------AGDITDAVIDDLAPLL-SA-GDIVIDGGNSNYKDSLRRAKLLAEKG 112 (300)
T ss_pred -----------------------CCCchHHHHHHHHhhc-CC-CCEEEECCccchHHHHHHHHHHHhcC
Confidence 44 3334444454444 44 44566666777777777777776653
No 161
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.10 E-value=0.0047 Score=59.84 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=75.3
Q ss_pred CceeEEEEeC----ChhhHHHHHHhhhhcCCCc--EEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143 5 DTVKYGIIGM----GMMGREHFINLHHLRSQGV--SVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV 78 (376)
Q Consensus 5 ~~~~v~iiG~----G~~g~~~~~~~~~~~~~~~--~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V 78 (376)
.+-+|+|||+ |.+|...+..+.+. ++ +|+.| .+... +-.|++ +|.+++++-+. +|++
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~---gf~g~v~~V-np~~~---------~i~G~~--~~~sl~~lp~~--~Dla 68 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEG---GYKGKIYPV-NPKAG---------EILGVK--AYPSVLEIPDP--VDLA 68 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhC---CCCCcEEEE-CCCCC---------ccCCcc--ccCCHHHCCCC--CCEE
Confidence 4678999998 66888888888875 44 55543 44322 134765 99999998543 8999
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEE-ecCCCC----CHHHHHHHHHHHHhCCCeEEE
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLV-EKPLCT----TVADCKKVVDAARKRPDILVQ 132 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~-EKP~a~----~~~e~~~l~~~a~~~~~~~~~ 132 (376)
+|++|+..-.+.+.+|.+.| -+.+++ -.-++. ..+.-++|.+.++ ++|+.+.
T Consensus 69 vi~vp~~~~~~~l~e~~~~g-v~~~vi~s~gf~e~g~~g~~~~~~l~~~a~-~~girvl 125 (447)
T TIGR02717 69 VIVVPAKYVPQVVEECGEKG-VKGAVVITAGFKEVGEEGAELEQELVEIAR-KYGMRLL 125 (447)
T ss_pred EEecCHHHHHHHHHHHHhcC-CCEEEEECCCccccCcchHHHHHHHHHHHH-HcCCEEE
Confidence 99999999999999999943 234544 111211 2333478999995 4576643
No 162
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.09 E-value=0.0046 Score=56.53 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=50.9
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH-HHh------cC-CC----------CCccCCHH
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL-ANA------FD-WP----------LKVFPGHQ 67 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~-~~~------~~-~~----------~~~~~~~~ 67 (376)
..||+|||+|.||......+... +.+|+ ++|++++.++++.+. .+. .| ++ +...++++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~---G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 79 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA---GYDVL-LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE 79 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH
Confidence 46899999999999888777764 77866 789998866543221 111 12 11 13456775
Q ss_pred HHhhCCCCCEEEEeCCCCcc
Q 017143 68 ELLDSGLCDVVVVSTPNMTH 87 (376)
Q Consensus 68 ~~l~~~~~D~V~i~t~~~~h 87 (376)
+ ++ +.|+|+.|+|...+
T Consensus 80 ~-~~--~aD~Vieavpe~~~ 96 (292)
T PRK07530 80 D-LA--DCDLVIEAATEDET 96 (292)
T ss_pred H-hc--CCCEEEEcCcCCHH
Confidence 4 44 48999999998755
No 163
>PRK07574 formate dehydrogenase; Provisional
Probab=97.08 E-value=0.0021 Score=60.57 Aligned_cols=69 Identities=22% Similarity=0.390 Sum_probs=52.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
.+|||||+|.||+..+..++.. +.+|. ++|+...+ .+..+++++ ..+.+++++++. .|+|++++|...
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f---G~~V~-~~dr~~~~----~~~~~~~g~--~~~~~l~ell~~--aDvV~l~lPlt~ 260 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF---DVKLH-YTDRHRLP----EEVEQELGL--TYHVSFDSLVSV--CDVVTIHCPLHP 260 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEE-EECCCCCc----hhhHhhcCc--eecCCHHHHhhc--CCEEEEcCCCCH
Confidence 5899999999999988888776 88877 46876532 122334454 357899999987 899999999765
Q ss_pred c
Q 017143 87 H 87 (376)
Q Consensus 87 h 87 (376)
+
T Consensus 261 ~ 261 (385)
T PRK07574 261 E 261 (385)
T ss_pred H
Confidence 4
No 164
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.07 E-value=0.0067 Score=55.41 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=49.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh----------cCC-C----------CCccCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA----------FDW-P----------LKVFPG 65 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~----------~~~-~----------~~~~~~ 65 (376)
-||+|||+|.||......++.. +.+|+ ++|++++.++++.+..++ .+. . +...++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~-l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART---GYDVT-IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc---CCeEE-EEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 5799999999999988777764 67755 689999876544331111 011 0 123345
Q ss_pred HHHHhhCCCCCEEEEeCCCCcc
Q 017143 66 HQELLDSGLCDVVVVSTPNMTH 87 (376)
Q Consensus 66 ~~~~l~~~~~D~V~i~t~~~~h 87 (376)
+ +.+++ .|+|+.+.|++..
T Consensus 80 ~-~~~~~--aDlVieav~e~~~ 98 (291)
T PRK06035 80 Y-ESLSD--ADFIVEAVPEKLD 98 (291)
T ss_pred H-HHhCC--CCEEEEcCcCcHH
Confidence 5 44544 8999999999863
No 165
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.06 E-value=0.0017 Score=58.96 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=74.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC--C---CCccCCHHHHhhCCCCCEEEEe
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW--P---LKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
-++.|||+|..|+..+..+... ++.-+.|++|+.+ ++++++++++- + +..++++.+.+.+ .|+|+.+
T Consensus 128 k~vlIlGaGGaaraia~aL~~~---G~~~I~I~nR~~~---ka~~la~~l~~~~~~~~~~~~~~~~~~~~~--aDiVIna 199 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL---GVERLTIFDVDPA---RAAALADELNARFPAARATAGSDLAAALAA--ADGLVHA 199 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc---CCCEEEEECCCHH---HHHHHHHHHHhhCCCeEEEeccchHhhhCC--CCEEEEC
Confidence 4899999999999998888876 5654678999987 56666655421 1 1223444455544 8999999
Q ss_pred CCCCccH----HHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHH
Q 017143 82 TPNMTHY----QILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLI 147 (376)
Q Consensus 82 t~~~~h~----~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k 147 (376)
||-..+. .+-...++ .+. +.++ +|.- -.+.+.|+++ |..+.-|............+
T Consensus 200 Tp~Gm~~~~~~~~~~~~l~--~~~-~v~DivY~P~~------T~ll~~A~~~-G~~~~~G~~ML~~Qa~~~f~ 262 (284)
T PRK12549 200 TPTGMAKHPGLPLPAELLR--PGL-WVADIVYFPLE------TELLRAARAL-GCRTLDGGGMAVFQAVDAFE 262 (284)
T ss_pred CcCCCCCCCCCCCCHHHcC--CCc-EEEEeeeCCCC------CHHHHHHHHC-CCeEecCHHHHHHHHHHHHH
Confidence 9965432 12223344 333 2222 3432 1366666444 77777776655544444433
No 166
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.04 E-value=0.0084 Score=56.26 Aligned_cols=139 Identities=16% Similarity=0.114 Sum_probs=84.2
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC----C-HHHHhhC---CCCCEEE
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP----G-HQELLDS---GLCDVVV 79 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~l~~---~~~D~V~ 79 (376)
+++|+|+|.+|...+..++.. +...+.+.|+++++++.++++ .+.+ .... + .+.+++. ..+|+|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~---Ga~~Viv~d~~~~Rl~~A~~~---~g~~-~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL---GASVVIVVDRSPERLELAKEA---GGAD-VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCHHHHHHHHHh---CCCe-EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 799999999999876665555 555555679999876655542 3332 1111 1 2222232 2589999
Q ss_pred EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCce
Q 017143 80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV 158 (376)
Q Consensus 80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i 158 (376)
-|+........++++++.+ |.-+++=-+..... ...+.... .+ ++.+.-++.......+..+.+++.+|++---
T Consensus 244 e~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~--~~~~~~~~-~k-el~l~gs~~~~~~~~~~~~~~ll~~g~i~~~ 317 (350)
T COG1063 244 EAVGSPPALDQALEALRPG-GTVVVVGVYGGEDI--PLPAGLVV-SK-ELTLRGSLRPSGREDFERALDLLASGKIDPE 317 (350)
T ss_pred ECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccC--ccCHHHHH-hc-ccEEEeccCCCCcccHHHHHHHHHcCCCChh
Confidence 9999766677888888843 55555543332211 12233334 33 4455554333334578889999999886533
No 167
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.04 E-value=0.0017 Score=62.02 Aligned_cols=72 Identities=19% Similarity=0.349 Sum_probs=55.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
..|+.|||+|.+|+..+..+... ++.-+.|+.|+.+ ++++++++++ ..+..|+++.+++.+ .|+|+.||+.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~---g~~~I~V~nRt~~---ra~~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a 252 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTAL---APKQIMLANRTIE---KAQKITSAFRNASAHYLSELPQLIKK--ADIIIAAVNV 252 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEECCCHH---HHHHHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCC
Confidence 46899999999999988888775 6656678999887 7888988886 332345666666765 8999999975
Q ss_pred C
Q 017143 85 M 85 (376)
Q Consensus 85 ~ 85 (376)
.
T Consensus 253 ~ 253 (414)
T PRK13940 253 L 253 (414)
T ss_pred C
Confidence 3
No 168
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.00 E-value=0.0048 Score=56.82 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=54.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH-------HhcCCC-------CCccCCHHHHhhC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA-------NAFDWP-------LKVFPGHQELLDS 72 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~-------~~~~~~-------~~~~~~~~~~l~~ 72 (376)
-||||||+|.||......++.. +++|+ ++|++++..+.+.+.. .+.+.. +...+++++++++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a---G~~V~-l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH---GLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC
Confidence 5799999999999988877764 89977 7899987654432210 111110 2456788888876
Q ss_pred CCCCEEEEeCCCCccHHH
Q 017143 73 GLCDVVVVSTPNMTHYQI 90 (376)
Q Consensus 73 ~~~D~V~i~t~~~~h~~~ 90 (376)
.|+|+-+.|.......
T Consensus 84 --aDlViEavpE~l~vK~ 99 (321)
T PRK07066 84 --ADFIQESAPEREALKL 99 (321)
T ss_pred --CCEEEECCcCCHHHHH
Confidence 8999999998765433
No 169
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.00 E-value=0.0019 Score=58.56 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=77.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
.-++.|+|+|.+|+..+..+... ++.-+.|++|+.+ ++++++++++.. +....+..+.+. +.|+|+-+||
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~---g~~~V~v~~R~~~---~a~~l~~~~~~~~~~~~~~~~~~~~~--~~DivInaTp 194 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDL---GVAEITIVNRTVE---RAEELAKLFGALGKAELDLELQEELA--DFDLIINATS 194 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEEeCCHH---HHHHHHHHhhhccceeecccchhccc--cCCEEEECCc
Confidence 35899999999999999998875 5444668899987 566666655411 011012234443 4899999999
Q ss_pred CCccH-----HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHH
Q 017143 84 NMTHY-----QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLI 147 (376)
Q Consensus 84 ~~~h~-----~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k 147 (376)
-..+. ++....+. .+ .++++- .-++.+ -.|.+.|+++ |+.+.-|............+
T Consensus 195 ~g~~~~~~~~~~~~~~l~--~~-~~v~Di--vY~P~~-T~ll~~A~~~-G~~~~~G~~Ml~~Qa~~~f~ 256 (278)
T PRK00258 195 AGMSGELPLPPLPLSLLR--PG-TIVYDM--IYGPLP-TPFLAWAKAQ-GARTIDGLGMLVHQAAEAFE 256 (278)
T ss_pred CCCCCCCCCCCCCHHHcC--CC-CEEEEe--ecCCCC-CHHHHHHHHC-cCeecCCHHHHHHHHHHHHH
Confidence 87763 23345566 43 333332 112222 2466777444 88888777666544444443
No 170
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.98 E-value=0.0036 Score=55.70 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=56.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
-+|+|||+|.-|+.|..+|+.. +++|+.-.-.... ..+.|.+-|+. + -+++|+... .|+|++.+|+..
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS---GlnViiGlr~g~~----s~~kA~~dGf~--V-~~v~ea~k~--ADvim~L~PDe~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS---GLNVIIGLRKGSS----SWKKAKEDGFK--V-YTVEEAAKR--ADVVMILLPDEQ 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc---CCcEEEEecCCch----hHHHHHhcCCE--e-ecHHHHhhc--CCEEEEeCchhh
Confidence 5899999999999998777664 7776543333222 23445566765 5 458899987 899999999999
Q ss_pred cHHHHHHH
Q 017143 87 HYQILMDI 94 (376)
Q Consensus 87 h~~~~~~a 94 (376)
|.++-...
T Consensus 87 q~~vy~~~ 94 (338)
T COG0059 87 QKEVYEKE 94 (338)
T ss_pred HHHHHHHH
Confidence 98887743
No 171
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0084 Score=54.64 Aligned_cols=149 Identities=11% Similarity=0.137 Sum_probs=97.4
Q ss_pred ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
++||||+| +|..|+.++..|.+. ...++.+.++.....-=.+..++..+ +. .-++..++..-.++|+|+-|.+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~-~f~~~~~~~~AS~rSaG~~~~~f~~~~~~----v~~~~~~~~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEER-HFPFEELVLLASARSAGKKYIEFGGKSIG----VPEDAADEFVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhc-CCCcceEEEEecccccCCccccccCcccc----CccccccccccccCCEEEEeCc
Confidence 47999999 598999999888873 27777555554332200011222211 12 2233333444457999999999
Q ss_pred CCccHHHHHHHHcCCCCCeEEE---------ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143 84 NMTHYQILMDIINHPKPHHVLV---------EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS 154 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~---------EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~ 154 (376)
.+.-.+++.++.+ +|.-|+- +-|+-...--...|.+.- ++ | .+..+-|+.-...+..++-+.+...
T Consensus 76 ~~~s~~~~p~~~~--~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~-~r-g-~IianpNCst~~l~~aL~PL~~~~~ 150 (334)
T COG0136 76 GSVSKEVEPKAAE--AGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQ-KR-G-FIIANPNCSTIQLVLALKPLHDAFG 150 (334)
T ss_pred hHHHHHHHHHHHH--cCCEEEeCCcccccCCCCCEecCCcCHHHHHhhh-hC-C-CEEECCChHHHHHHHHHHHHHhhcC
Confidence 9888999999999 8876665 335433222222366666 44 5 7888999999999999999998666
Q ss_pred CCceEEEEEe
Q 017143 155 IGQVKMVAIR 164 (376)
Q Consensus 155 iG~i~~~~~~ 164 (376)
|-+|...+.+
T Consensus 151 i~~v~VsTyQ 160 (334)
T COG0136 151 IKRVVVSTYQ 160 (334)
T ss_pred ceEEEEEEee
Confidence 6666655554
No 172
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.95 E-value=0.004 Score=56.58 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=75.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
-+++|||+|.+|+..+..++.. +.+++ ++++++++.+ .. .+.+.....++++++++.+ .|+|+.++|...
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~---G~~V~-v~~R~~~~~~---~~-~~~g~~~~~~~~l~~~l~~--aDiVint~P~~i 221 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL---GARVF-VGARSSADLA---RI-TEMGLIPFPLNKLEEKVAE--IDIVINTIPALV 221 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC---CCEEE-EEeCCHHHHH---HH-HHCCCeeecHHHHHHHhcc--CCEEEECCChHH
Confidence 5899999999999988888876 56755 7888876432 22 2345432234567777765 899999998653
Q ss_pred cHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEE--EeeccccCHHH
Q 017143 87 HYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQ--VGLEYRYMPPV 143 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~--v~~~~r~~p~~ 143 (376)
--.-..+.++ .+ .++++ +|..++. +.|++ .|+... .|....+.|..
T Consensus 222 i~~~~l~~~k--~~-aliIDlas~Pg~tdf-------~~Ak~-~G~~a~~~~glPg~~ap~t 272 (287)
T TIGR02853 222 LTADVLSKLP--KH-AVIIDLASKPGGTDF-------EYAKK-RGIKALLAPGLPGIVAPKT 272 (287)
T ss_pred hCHHHHhcCC--CC-eEEEEeCcCCCCCCH-------HHHHH-CCCEEEEeCCCCcccCchh
Confidence 2222344455 43 45553 6766654 34533 366655 67788888843
No 173
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.95 E-value=0.0041 Score=56.79 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=74.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
.-|++|||+|.+|+..+..++.+ +.+++ ++++++++. +.++.+|.....++++.+.+.. .|+|+.++|+.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~---Ga~V~-v~~r~~~~~----~~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p~~ 221 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL---GANVT-VGARKSAHL----ARITEMGLSPFHLSELAEEVGK--IDIIFNTIPAL 221 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCEEE-EEECCHHHH----HHHHHcCCeeecHHHHHHHhCC--CCEEEECCChh
Confidence 46999999999999988888876 66655 678887632 2344566542234566677765 89999999865
Q ss_pred ccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEE--EeeccccCH
Q 017143 86 THYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQ--VGLEYRYMP 141 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~--v~~~~r~~p 141 (376)
.-.+-..+.++ .| .++++ .|..++. +.+ ++.|+... .+...++.|
T Consensus 222 ~i~~~~l~~~~--~g-~vIIDla~~pggtd~-------~~a-~~~Gv~~~~~~~lpg~vap 271 (296)
T PRK08306 222 VLTKEVLSKMP--PE-ALIIDLASKPGGTDF-------EYA-EKRGIKALLAPGLPGKVAP 271 (296)
T ss_pred hhhHHHHHcCC--CC-cEEEEEccCCCCcCe-------eeh-hhCCeEEEEECCCCccCCH
Confidence 33333334455 43 45554 3433332 355 44577776 777778866
No 174
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.94 E-value=0.0056 Score=55.68 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=54.8
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHhcCCC----------CCccCCHHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANAFDWP----------LKVFPGHQE 68 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~~~~~----------~~~~~~~~~ 68 (376)
-||||||+|.||......++.. +++|+ ++|++++.++++.+ +.++..+. +...+++++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~---G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA---GVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC---CCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 4899999999999988777764 88866 78999987655322 22222211 125677744
Q ss_pred HhhCCCCCEEEEeCCCCccHHHHH
Q 017143 69 LLDSGLCDVVVVSTPNMTHYQILM 92 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h~~~~~ 92 (376)
+++ .|+|+-|.|.+.......
T Consensus 82 -~~~--~d~ViEav~E~~~~K~~l 102 (286)
T PRK07819 82 -FAD--RQLVIEAVVEDEAVKTEI 102 (286)
T ss_pred -hCC--CCEEEEecccCHHHHHHH
Confidence 544 899999999987755544
No 175
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.93 E-value=0.002 Score=62.00 Aligned_cols=82 Identities=26% Similarity=0.267 Sum_probs=58.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
..+|+|||+|.+|...+..+... ++.-+.+++++++ ++.++++++|..+..+++..+.+.. .|+|+.||+..
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~---G~~~V~v~~r~~~---ra~~la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~ 253 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEK---GVRKITVANRTLE---RAEELAEEFGGEAIPLDELPEALAE--ADIVISSTGAP 253 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHC---CCCeEEEEeCCHH---HHHHHHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCC
Confidence 46899999999999988888764 6655668899887 6677888877432223455556654 89999999854
Q ss_pred c---cHHHHHHHH
Q 017143 86 T---HYQILMDII 95 (376)
Q Consensus 86 ~---h~~~~~~al 95 (376)
. ..+.+..++
T Consensus 254 ~~~i~~~~l~~~~ 266 (423)
T PRK00045 254 HPIIGKGMVERAL 266 (423)
T ss_pred CcEEcHHHHHHHH
Confidence 3 344555554
No 176
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.92 E-value=0.0083 Score=52.05 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=71.6
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh----------hhHHHHHHHHHhcCCCCCcc-----CCHHHH
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL----------QSRQQALKLANAFDWPLKVF-----PGHQEL 69 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 69 (376)
+..||+|.|+|.+|...+..|.+. +..+++|+|.+. +. .+...+..++. .| .+-+++
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~---G~~vV~vsD~~g~i~~~Gld~~~l---~~~~~~~~~~~--~~~~~~~~~~~~l 93 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE---GGKVLAVSDPDGYIYDPGITTEEL---INYAVALGGSA--RVKVQDYFPGEAI 93 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEEcCCCcEECCCCCHHHH---HHHHHhhCCcc--ccCcccccCcccc
Confidence 468999999999999888888775 899999999987 53 22222233332 22 233566
Q ss_pred hhCCCCCEEEEeCCCC-ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143 70 LDSGLCDVVVVSTPNM-THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV 133 (376)
Q Consensus 70 l~~~~~D~V~i~t~~~-~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v 133 (376)
+.. ++|+++-|++.. .+.+.+.+ ++ ..+++|+-=.....++.++++ ++ |+.+..
T Consensus 94 ~~~-~~DVlipaA~~~~i~~~~a~~-l~----a~~V~e~AN~p~t~~a~~~L~---~~-Gi~v~P 148 (217)
T cd05211 94 LGL-DVDIFAPCALGNVIDLENAKK-LK----AKVVAEGANNPTTDEALRILH---ER-GIVVAP 148 (217)
T ss_pred eec-cccEEeeccccCccChhhHhh-cC----ccEEEeCCCCCCCHHHHHHHH---HC-CcEEEC
Confidence 665 699999999865 44333332 33 458888754443446666653 33 655443
No 177
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.91 E-value=0.0061 Score=56.95 Aligned_cols=101 Identities=21% Similarity=0.184 Sum_probs=64.2
Q ss_pred CCC-CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh------c--CC--C--CCccCCHH
Q 017143 1 MAA-NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA------F--DW--P--LKVFPGHQ 67 (376)
Q Consensus 1 m~~-~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~------~--~~--~--~~~~~~~~ 67 (376)
|++ ..++||+|||+|.||......+.+. + .++ ++.++++. .+++.+. + ++ + +...++.+
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~---g-~v~-l~~~~~~~---~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~ 72 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGTTVASICARR---G-PTL-QWVRSAET---ADDINDNHRNSRYLGNDVVLSDTLRATTDFA 72 (341)
T ss_pred CccccCCCeEEEECCCHHHHHHHHHHHHC---C-CEE-EEeCCHHH---HHHHHhcCCCcccCCCCcccCCCeEEECCHH
Confidence 533 4568999999999999888877775 3 333 45577763 3333321 1 11 1 13456777
Q ss_pred HHhhCCCCCEEEEeCCCCccHHHHHHHHcCC-CCC-eEEEecCCCC
Q 017143 68 ELLDSGLCDVVVVSTPNMTHYQILMDIINHP-KPH-HVLVEKPLCT 111 (376)
Q Consensus 68 ~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~-~g~-~Vl~EKP~a~ 111 (376)
+.+++ .|+|++++|+....+.+.+....- ... -|.+-|-+..
T Consensus 73 ~a~~~--aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 73 EAANC--ADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HHHhc--CCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 77765 899999999887777666543210 232 3567886653
No 178
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.85 E-value=0.0026 Score=60.08 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=81.0
Q ss_pred CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCCCCccCCHHHH-hhCCCCCEE
Q 017143 5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWPLKVFPGHQEL-LDSGLCDVV 78 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-l~~~~~D~V 78 (376)
+++||+|||+ |..|...++.|..+ |.++|+.+...... .+.+...+ +.+...+.+++.. ++ ++|+|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~sa----G~~i~~~~~~l~~~~~~~~~~~~~~~~~--~~DvV 108 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKA----GQSFGSVFPHLITQDLPNLVAVKDADFS--DVDAV 108 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhhc----CCCchhhCccccCccccceecCCHHHhc--CCCEE
Confidence 4679999995 89999999999988 99999998764221 22222111 1111123333332 33 49999
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEEec-----------------CCCC---C---HHHHHHHHHHHHhCCCeEEEEee
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLVEK-----------------PLCT---T---VADCKKVVDAARKRPDILVQVGL 135 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EK-----------------P~a~---~---~~e~~~l~~~a~~~~~~~~~v~~ 135 (376)
+.++|+....+++.+ ++ +|+.|+-=. |... + ....-|+.+.-.+ +..+..+.
T Consensus 109 f~Alp~~~s~~i~~~-~~--~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~--~~~iIAnP 183 (381)
T PLN02968 109 FCCLPHGTTQEIIKA-LP--KDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIK--SARLVANP 183 (381)
T ss_pred EEcCCHHHHHHHHHH-Hh--CCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhc--CCCEEECC
Confidence 999999888888877 47 666544311 1110 0 0111112111101 22344554
Q ss_pred ccccCHHHHHHHHHHHcCCCC
Q 017143 136 EYRYMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 136 ~~r~~p~~~~~k~~i~~g~iG 156 (376)
++--......++-+++.+.|.
T Consensus 184 gC~~t~~~laL~PL~~~~~i~ 204 (381)
T PLN02968 184 GCYPTGIQLPLVPLVKAGLIE 204 (381)
T ss_pred CCHHHHHHHHHHHHHHcCCCC
Confidence 444466777788888988884
No 179
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.83 E-value=0.014 Score=53.38 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=49.8
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHh-----------cCCCCCccCCHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANA-----------FDWPLKVFPGHQ 67 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~-----------~~~~~~~~~~~~ 67 (376)
.||+|||+|.||...+..+... +.+|+ ++|++++..+++++ +.++ ++. ....++++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~---G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~ 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA---GMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGR-IRCTTNLE 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc-eEeeCCHH
Confidence 4799999999999988888775 67765 68999886554322 2211 111 12334554
Q ss_pred HHhhCCCCCEEEEeCCCCccH
Q 017143 68 ELLDSGLCDVVVVSTPNMTHY 88 (376)
Q Consensus 68 ~~l~~~~~D~V~i~t~~~~h~ 88 (376)
.+++ .|+|+.|.|...+.
T Consensus 80 -~~~~--aD~Vieav~e~~~~ 97 (295)
T PLN02545 80 -ELRD--ADFIIEAIVESEDL 97 (295)
T ss_pred -HhCC--CCEEEEcCccCHHH
Confidence 4554 89999999966553
No 180
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.82 E-value=0.0051 Score=57.18 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=55.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-----c--CC--C--CCccCCHHHHhhCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-----F--DW--P--LKVFPGHQELLDSGLC 75 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-----~--~~--~--~~~~~~~~~~l~~~~~ 75 (376)
|||+|||+|.+|......|.+. +.+|. +++++++. .+.+.+. + +. + ++.+.+.++.+.. +.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~---g~~V~-l~~r~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~ 72 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK---KISVN-LWGRNHTT---FESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD-NA 72 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC---CCeEE-EEecCHHH---HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC-CC
Confidence 3799999999999888877764 66765 88888764 3333321 1 11 1 2345677777643 38
Q ss_pred CEEEEeCCCCccHHHHHHH
Q 017143 76 DVVVVSTPNMTHYQILMDI 94 (376)
Q Consensus 76 D~V~i~t~~~~h~~~~~~a 94 (376)
|+|+|++|+....+.+.+.
T Consensus 73 Dliiiavks~~~~~~l~~l 91 (326)
T PRK14620 73 TCIILAVPTQQLRTICQQL 91 (326)
T ss_pred CEEEEEeCHHHHHHHHHHH
Confidence 9999999988776666554
No 181
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.82 E-value=0.0054 Score=56.52 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=48.8
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
++||+|||+|.+|......+... +.+|. ++++++. .+.++++++ .|+|++++|..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~---G~~V~-~~~r~~~-------------------~~~~~~~~~--advvi~~vp~~ 58 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN---GHRVR-VWSRRSG-------------------LSLAAVLAD--ADVIVSAVSMK 58 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC---CCEEE-EEeCCCC-------------------CCHHHHHhc--CCEEEEECChH
Confidence 47899999999999988888775 67765 7887642 356677765 89999999997
Q ss_pred ccHHHHHH
Q 017143 86 THYQILMD 93 (376)
Q Consensus 86 ~h~~~~~~ 93 (376)
.+.+++..
T Consensus 59 ~~~~v~~~ 66 (308)
T PRK14619 59 GVRPVAEQ 66 (308)
T ss_pred HHHHHHHH
Confidence 66665544
No 182
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.81 E-value=0.007 Score=55.53 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=49.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC---------CccCCHHHHhhCCCCCE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL---------KVFPGHQELLDSGLCDV 77 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~D~ 77 (376)
+||+|||+|.+|......|.+. +.+|+ +++++++. .+.+.+. |+.+ ...++.+++ .++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~---g~~V~-~~~r~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~---~~~d~ 69 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA---GHDVT-LVARRGAH---LDALNEN-GLRLEDGEITVPVLAADDPAEL---GPQDL 69 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCeEE-EEECChHH---HHHHHHc-CCcccCCceeecccCCCChhHc---CCCCE
Confidence 4799999999999888877764 56765 55676653 3333322 3311 234455554 34899
Q ss_pred EEEeCCCCccHHHHHHH
Q 017143 78 VVVSTPNMTHYQILMDI 94 (376)
Q Consensus 78 V~i~t~~~~h~~~~~~a 94 (376)
|++++++....+.+...
T Consensus 70 vila~k~~~~~~~~~~l 86 (304)
T PRK06522 70 VILAVKAYQLPAALPSL 86 (304)
T ss_pred EEEecccccHHHHHHHH
Confidence 99999987665544433
No 183
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.81 E-value=0.003 Score=60.70 Aligned_cols=83 Identities=25% Similarity=0.245 Sum_probs=57.9
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
.-+++|||+|.+|...+..+... ++.-+.+++++.+ ++.+++++++.....+++..+++.. .|+|+.||+..
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~---G~~~V~v~~rs~~---ra~~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~ 251 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRK---GVGKILIANRTYE---RAEDLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAP 251 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHC---CCCEEEEEeCCHH---HHHHHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCC
Confidence 36899999999999988888775 5444557899887 5667777776431223556666654 89999999755
Q ss_pred cc---HHHHHHHHc
Q 017143 86 TH---YQILMDIIN 96 (376)
Q Consensus 86 ~h---~~~~~~al~ 96 (376)
.+ .+.+..++.
T Consensus 252 ~~ii~~e~l~~~~~ 265 (417)
T TIGR01035 252 HPIVSKEDVERALR 265 (417)
T ss_pred CceEcHHHHHHHHh
Confidence 43 344555544
No 184
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.80 E-value=0.0043 Score=58.15 Aligned_cols=68 Identities=24% Similarity=0.267 Sum_probs=53.2
Q ss_pred ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
+.+|+|||+ |.||......+++. .+.+|++ +|++. ....+.++++.+ .|+|++|+|.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~--~~~~V~g-~D~~d-----------------~~~~~~~~~v~~--aDlVilavPv 61 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR--MQLEVIG-HDPAD-----------------PGSLDPATLLQR--ADVLIFSAPI 61 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc--CCCEEEE-EcCCc-----------------cccCCHHHHhcC--CCEEEEeCCH
Confidence 689999999 99999999999875 4778775 67632 133567777765 8999999998
Q ss_pred CccHHHHHHHH
Q 017143 85 MTHYQILMDII 95 (376)
Q Consensus 85 ~~h~~~~~~al 95 (376)
..-.+++.+..
T Consensus 62 ~~~~~~l~~l~ 72 (370)
T PRK08818 62 RHTAALIEEYV 72 (370)
T ss_pred HHHHHHHHHHh
Confidence 87777776654
No 185
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.75 E-value=0.024 Score=51.11 Aligned_cols=146 Identities=21% Similarity=0.218 Sum_probs=90.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHH---hh----CCCCCEEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQEL---LD----SGLCDVVV 79 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~----~~~~D~V~ 79 (376)
-|+.|+|+|.+|...+...+.+ +..-+.+.|.++.+++.|+++..+.-.+.....+.+++ ++ ...+|.++
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~---GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAM---GASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHc---CCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 5899999999998877777777 44445578999987766655433211111122233332 22 24499999
Q ss_pred EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCH-HHHHHHHHHHcCCCCce
Q 017143 80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP-PVAKLIQIVKSGSIGQV 158 (376)
Q Consensus 80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p-~~~~~k~~i~~g~iG~i 158 (376)
-||--+.-.+.++.|++.+ |.-|+..- .....+.. +.+.+ -+ .+. +.| .+||.. .+..+-+++.+|++--=
T Consensus 248 dCsG~~~~~~aai~a~r~g-Gt~vlvg~--g~~~~~fp-i~~v~-~k-E~~-~~g-~fry~~~~y~~ai~li~sGki~~k 319 (354)
T KOG0024|consen 248 DCSGAEVTIRAAIKATRSG-GTVVLVGM--GAEEIQFP-IIDVA-LK-EVD-LRG-SFRYCNGDYPTAIELVSSGKIDVK 319 (354)
T ss_pred EccCchHHHHHHHHHhccC-CEEEEecc--CCCccccC-hhhhh-hh-eee-eee-eeeeccccHHHHHHHHHcCCcCch
Confidence 9999998899999999964 66555541 11111221 23333 22 222 233 567766 88999999999887533
Q ss_pred EEEEE
Q 017143 159 KMVAI 163 (376)
Q Consensus 159 ~~~~~ 163 (376)
-.++.
T Consensus 320 ~lIT~ 324 (354)
T KOG0024|consen 320 PLITH 324 (354)
T ss_pred hheec
Confidence 33433
No 186
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.72 E-value=0.003 Score=58.81 Aligned_cols=140 Identities=11% Similarity=0.084 Sum_probs=84.9
Q ss_pred CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeC
Q 017143 5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVST 82 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t 82 (376)
+++||+|||+ |..|...++.|....-|.+++..+.+..... +.+.. .+.+ ..+.+.+ +.+. ++|+|+.|+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaG----k~~~~-~~~~-~~v~~~~~~~~~--~~D~vf~a~ 77 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAG----KKVTF-EGRD-YTVEELTEDSFD--GVDIALFSA 77 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCC----Ceeee-cCce-eEEEeCCHHHHc--CCCEEEECC
Confidence 5799999995 8889999988887211889998887653321 11111 1222 2233332 3343 499999999
Q ss_pred CCCccHHHHHHHHcCCCCCeEEE---------ecCCCC---CHHHHHHHHHHHHh-CCCeEEEEeeccccCHHHHHHHHH
Q 017143 83 PNMTHYQILMDIINHPKPHHVLV---------EKPLCT---TVADCKKVVDAARK-RPDILVQVGLEYRYMPPVAKLIQI 149 (376)
Q Consensus 83 ~~~~h~~~~~~al~~~~g~~Vl~---------EKP~a~---~~~e~~~l~~~a~~-~~~~~~~v~~~~r~~p~~~~~k~~ 149 (376)
|+....+++.++.+ +|+-|+= ..|... +.++ |.. ++. +.+..+..+.++.-......++-+
T Consensus 78 p~~~s~~~~~~~~~--~g~~VIDlS~~fR~~~~~p~~vPEvn~~~---i~~-~~~~~~~~~iIanPgC~~t~~~laL~PL 151 (344)
T PLN02383 78 GGSISKKFGPIAVD--KGAVVVDNSSAFRMEEGVPLVIPEVNPEA---MKH-IKLGKGKGALIANPNCSTIICLMAVTPL 151 (344)
T ss_pred CcHHHHHHHHHHHh--CCCEEEECCchhhcCCCCceECCCcCHHH---HHh-hhhcccCCcEEECCCcHHHHHHHHHHHH
Confidence 99999999999989 7765542 112221 2232 222 311 111235556565556677788888
Q ss_pred HHcCCCCce
Q 017143 150 VKSGSIGQV 158 (376)
Q Consensus 150 i~~g~iG~i 158 (376)
.+.+.|-+|
T Consensus 152 ~~~~~i~~v 160 (344)
T PLN02383 152 HRHAKVKRM 160 (344)
T ss_pred HHcCCeeEE
Confidence 887777443
No 187
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0046 Score=57.03 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=70.3
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
.++||||+|.+|+.....++.. +++|.+ +|+...+ . .+...+. ...++++++|++ .|+|++.+|-..
T Consensus 143 kTvGIiG~G~IG~~va~~l~af---gm~v~~-~d~~~~~---~--~~~~~~~--~~~~~Ld~lL~~--sDiv~lh~PlT~ 209 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF---GMKVIG-YDPYSPR---E--RAGVDGV--VGVDSLDELLAE--ADILTLHLPLTP 209 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCeEEE-ECCCCch---h--hhccccc--eecccHHHHHhh--CCEEEEcCCCCc
Confidence 5899999999999988888887 999885 7873331 1 1111222 356889999998 799999999532
Q ss_pred cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143 87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG 156 (376)
- -+|+ .+.++. +.. +. |. +++|..+=--=....|.+.+++|+|.
T Consensus 210 e------------T~g~-------i~~~~~----a~M-K~-ga-ilIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 210 E------------TRGL-------INAEEL----AKM-KP-GA-ILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred c------------hhcc-------cCHHHH----hhC-CC-Ce-EEEECCCcceecHHHHHHHHHcCCcc
Confidence 1 0111 122222 222 22 43 66665555544567777888875543
No 188
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.72 E-value=0.044 Score=51.22 Aligned_cols=134 Identities=15% Similarity=0.182 Sum_probs=80.3
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHHHhhC-CCCCEEEEe
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQELLDS-GLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~-~~~D~V~i~ 81 (376)
-+|.|+|+|.+|...+..++.. +.+.+.++++++++++ +++++|.. .++ .+++++... ..+|+|+-+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~---G~~~Vi~~~~~~~~~~----~a~~lGa~-~vi~~~~~~~~~~~~~~g~~D~vid~ 242 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTL---GAAEIVCADVSPRSLS----LAREMGAD-KLVNPQNDDLDHYKAEKGYFDVSFEV 242 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEEeCCHHHHH----HHHHcCCc-EEecCCcccHHHHhccCCCCCEEEEC
Confidence 3789999999999877665554 6654445677777443 44556654 222 235555443 238999999
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG 156 (376)
+....-.+.+.++++.+ |+-|++--+.... +. .+.... .+ ++.+.-.+ .+...+..+.+++++|.|-
T Consensus 243 ~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~--~~-~~~~~~-~k-~~~i~g~~--~~~~~~~~~~~l~~~g~i~ 309 (343)
T PRK09880 243 SGHPSSINTCLEVTRAK-GVMVQVGMGGAPP--EF-PMMTLI-VK-EISLKGSF--RFTEEFNTAVSWLANGVIN 309 (343)
T ss_pred CCCHHHHHHHHHHhhcC-CEEEEEccCCCCC--cc-CHHHHH-hC-CcEEEEEe--eccccHHHHHHHHHcCCCC
Confidence 98766677788888853 6666664322111 11 122333 22 33333222 3445678888899888764
No 189
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.71 E-value=0.023 Score=59.03 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=63.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCC-CcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQ-GVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~-~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
.||+|||+|.+|...+..+... . ..+ +.++|+++++.+. +.++|+.....+++++++++ .|+|++|+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~--G~~~~-V~~~d~~~~~~~~----a~~~g~~~~~~~~~~~~~~~--aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER--GLARE-VVAVDRRAKSLEL----AVSLGVIDRGEEDLAEAVSG--ADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCCE-EEEEECChhHHHH----HHHCCCCCcccCCHHHHhcC--CCEEEECCCHH
Confidence 6899999999999988888775 2 235 4467998874332 33456421245678888865 89999999987
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHH
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~ 122 (376)
.-.+++.+..+.-....|++.-- +....-.+.+.+.
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~-svk~~~~~~l~~~ 110 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVG-STKGNVVDAARAV 110 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcC-CCchHHHHHHHHh
Confidence 43333333222101234666543 3333333444444
No 190
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.69 E-value=0.0057 Score=56.87 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=50.9
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.+|||||+|.+|+.....+... +.+|. ++|+++.. . ....++. .+.++++++++ .|+|++++|..
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~---G~~V~-~~d~~~~~---~--~~~~~~~---~~~~l~ell~~--aDiV~l~lP~t 215 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF---GMRIL-YYSRTRKP---E--AEKELGA---EYRPLEELLRE--SDFVSLHVPLT 215 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEE-EECCCCCh---h--hHHHcCC---EecCHHHHHhh--CCEEEEeCCCC
Confidence 36999999999999988888776 77876 57887652 1 1234454 35689999987 79999999965
Q ss_pred c
Q 017143 86 T 86 (376)
Q Consensus 86 ~ 86 (376)
.
T Consensus 216 ~ 216 (333)
T PRK13243 216 K 216 (333)
T ss_pred h
Confidence 4
No 191
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.68 E-value=0.0035 Score=58.09 Aligned_cols=140 Identities=11% Similarity=0.170 Sum_probs=84.8
Q ss_pred CCCCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcE---EEEEeCCChhhHHHHHHHHHhcCCCCCccC--CHHHHhhCCC
Q 017143 1 MAANDTVKYGIIGM-GMMGREHFINLHHLRSQGVS---VVCIADPHLQSRQQALKLANAFDWPLKVFP--GHQELLDSGL 74 (376)
Q Consensus 1 m~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~---~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 74 (376)
|+. +.+||||||+ |..|...+..|..+ ++++ |..+.+....- +.-.+. +.+ ..+. +.+++ . +
T Consensus 1 ~~~-~~~~VaIvGATG~vG~ell~lL~~h--~~f~v~~l~~~aS~~saG--k~~~~~---~~~-l~v~~~~~~~~-~--~ 68 (347)
T PRK06728 1 MSE-KGYHVAVVGATGAVGQKIIELLEKE--TKFNIAEVTLLSSKRSAG--KTVQFK---GRE-IIIQEAKINSF-E--G 68 (347)
T ss_pred CCC-CCCEEEEEeCCCHHHHHHHHHHHHC--CCCCcccEEEEECcccCC--CCeeeC---Ccc-eEEEeCCHHHh-c--C
Confidence 544 3589999995 88999999999877 7888 66665542210 111111 111 1222 33333 3 4
Q ss_pred CCEEEEeCCCCccHHHHHHHHcCCCCCeEEE-------ec--CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHH
Q 017143 75 CDVVVVSTPNMTHYQILMDIINHPKPHHVLV-------EK--PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAK 145 (376)
Q Consensus 75 ~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~-------EK--P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~ 145 (376)
+|+|+.++|+....+++.++.+ +|..|+= |. |+....--...|.+ ..+ +..+.++--......
T Consensus 69 ~Divf~a~~~~~s~~~~~~~~~--~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~----~~~--iIanPnC~tt~~~la 140 (347)
T PRK06728 69 VDIAFFSAGGEVSRQFVNQAVS--SGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKE----HKG--IIAVPNCSALQMVTA 140 (347)
T ss_pred CCEEEECCChHHHHHHHHHHHH--CCCEEEECchhhcCCCCCCeEeCCcCHHHHhc----cCC--EEECCCCHHHHHHHH
Confidence 9999999999999999999999 7765542 21 22221111112221 124 455555555667778
Q ss_pred HHHHHHcCCCCceEE
Q 017143 146 LIQIVKSGSIGQVKM 160 (376)
Q Consensus 146 ~k~~i~~g~iG~i~~ 160 (376)
++-+.+.+.|-+|..
T Consensus 141 L~PL~~~~~i~~v~V 155 (347)
T PRK06728 141 LQPIRKVFGLERIIV 155 (347)
T ss_pred HHHHHHcCCccEEEE
Confidence 888888877755433
No 192
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.68 E-value=0.011 Score=55.09 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=61.0
Q ss_pred eEEEEeCChhhHHHHHHhhhhc--CC---CcEEEEEeCCChh--hHHHHHHHHHh-----c--CC--C--CCccCCHHHH
Q 017143 8 KYGIIGMGMMGREHFINLHHLR--SQ---GVSVVCIADPHLQ--SRQQALKLANA-----F--DW--P--LKVFPGHQEL 69 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~--~~---~~~~~~v~d~~~~--~~~~~~~~~~~-----~--~~--~--~~~~~~~~~~ 69 (376)
||+|||+|.||......+.... .+ +.+|. +|.+++. ..+..+.+.+. | ++ | ++.++|++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~-lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVR-MWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEE-EEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 6899999999998777776541 00 14533 5666320 00123333221 1 32 2 2356889999
Q ss_pred hhCCCCCEEEEeCCCCccHHHHHHH---HcCCCCC-eEEEecCCCC
Q 017143 70 LDSGLCDVVVVSTPNMTHYQILMDI---INHPKPH-HVLVEKPLCT 111 (376)
Q Consensus 70 l~~~~~D~V~i~t~~~~h~~~~~~a---l~~~~g~-~Vl~EKP~a~ 111 (376)
+++ .|+|++++|++.+.+++.+. ++ .++ -|.|-|=+..
T Consensus 80 l~~--ADiIIlAVPs~~i~~vl~~l~~~l~--~~~~iVs~tKGie~ 121 (342)
T TIGR03376 80 AKG--ADILVFVIPHQFLEGICKQLKGHVK--PNARAISCIKGLEV 121 (342)
T ss_pred Hhc--CCEEEEECChHHHHHHHHHHHhhcC--CCCEEEEEeCCccc
Confidence 976 79999999999998887764 44 343 3555665543
No 193
>PRK04148 hypothetical protein; Provisional
Probab=96.66 E-value=0.013 Score=46.34 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=63.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC---CCccCCHHHHhhCCCCCEEEEeC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP---LKVFPGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~D~V~i~t 82 (376)
..|+..||+| .|......|.+. +.+|++ .|.++...+.+++ .++. ...|+.--++.+. .|+|+-.-
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~---G~~Via-IDi~~~aV~~a~~----~~~~~v~dDlf~p~~~~y~~--a~liysir 85 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES---GFDVIV-IDINEKAVEKAKK----LGLNAFVDDLFNPNLEIYKN--AKLIYSIR 85 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC---CCEEEE-EECCHHHHHHHHH----hCCeEEECcCCCCCHHHHhc--CCEEEEeC
Confidence 4789999999 777777777764 889887 5999985444433 3433 1445545566665 89999888
Q ss_pred CCC-ccHHHHHHHHcCCCCCeEEEecCCCCCH
Q 017143 83 PNM-THYQILMDIINHPKPHHVLVEKPLCTTV 113 (376)
Q Consensus 83 ~~~-~h~~~~~~al~~~~g~~Vl~EKP~a~~~ 113 (376)
||. .|..++.-|-+ -|-. ++=||++-+.
T Consensus 86 pp~el~~~~~~la~~--~~~~-~~i~~l~~e~ 114 (134)
T PRK04148 86 PPRDLQPFILELAKK--INVP-LIIKPLSGEE 114 (134)
T ss_pred CCHHHHHHHHHHHHH--cCCC-EEEEcCCCCC
Confidence 874 66666666666 4444 4457776543
No 194
>PLN00203 glutamyl-tRNA reductase
Probab=96.65 E-value=0.0044 Score=60.81 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=57.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-CC--CCccCCHHHHhhCCCCCEEEEeC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-WP--LKVFPGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~l~~~~~D~V~i~t 82 (376)
..+|+|||+|.+|..++..+... +++-+.|++++.+ ++++++++++ .. ...+++..+.+.. .|+|+.||
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~---G~~~V~V~nRs~e---ra~~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT 337 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSK---GCTKMVVVNRSEE---RVAALREEFPDVEIIYKPLDEMLACAAE--ADVVFTST 337 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhC---CCCeEEEEeCCHH---HHHHHHHHhCCCceEeecHhhHHHHHhc--CCEEEEcc
Confidence 57899999999999998888765 5654667899887 6777877763 22 1234566666655 89999998
Q ss_pred CC---CccHHHHHHHH
Q 017143 83 PN---MTHYQILMDII 95 (376)
Q Consensus 83 ~~---~~h~~~~~~al 95 (376)
+. -...+.+..+.
T Consensus 338 ~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 338 SSETPLFLKEHVEALP 353 (519)
T ss_pred CCCCCeeCHHHHHHhh
Confidence 63 23455555554
No 195
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.64 E-value=0.011 Score=55.05 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=49.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.+|||||+|.||+.....+++. -+.+|.+ +|++.... . . . .+ ...+++++++++ .|+|++++|..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~--~g~~V~~-~d~~~~~~--~---~-~-~~--~~~~~l~ell~~--aDvIvl~lP~t 211 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKG--YGSDVVA-YDPFPNAK--A---A-T-YV--DYKDTIEEAVEG--ADIVTLHMPAT 211 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc--CCCEEEE-ECCCccHh--H---H-h-hc--cccCCHHHHHHh--CCEEEEeCCCC
Confidence 36899999999999888887432 3778764 78776421 1 1 1 22 245689999987 89999999976
Q ss_pred ccH
Q 017143 86 THY 88 (376)
Q Consensus 86 ~h~ 88 (376)
...
T Consensus 212 ~~t 214 (332)
T PRK08605 212 KYN 214 (332)
T ss_pred cch
Confidence 543
No 196
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.60 E-value=0.011 Score=54.38 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=49.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-----------CCccCCHHHHhhCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-----------LKVFPGHQELLDSGLC 75 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~ 75 (376)
+||+|||+|.+|......|.+. +.+|+ ++++ +++ .+++.+ .|+. ....++.+++.. ++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~---g~~V~-~~~r-~~~---~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 69 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA---GRDVT-FLVR-PKR---AKALRE-RGLVIRSDHGDAVVPGPVITDPEELTG--PF 69 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC---CCceE-EEec-HHH---HHHHHh-CCeEEEeCCCeEEecceeecCHHHccC--CC
Confidence 4899999999999888888774 56655 4556 543 333332 2321 112445555543 48
Q ss_pred CEEEEeCCCCccHHHHHHH
Q 017143 76 DVVVVSTPNMTHYQILMDI 94 (376)
Q Consensus 76 D~V~i~t~~~~h~~~~~~a 94 (376)
|+|++|++...+.+.+.+.
T Consensus 70 d~vilavk~~~~~~~~~~l 88 (305)
T PRK12921 70 DLVILAVKAYQLDAAIPDL 88 (305)
T ss_pred CEEEEEecccCHHHHHHHH
Confidence 9999999988776655444
No 197
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.038 Score=49.84 Aligned_cols=125 Identities=21% Similarity=0.239 Sum_probs=69.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH-HHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH-QELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~D~V~i~t~~ 84 (376)
+.+|+|+|+|.||......++.. +..+ .|++++... ...+.+.++|+.-....+. .+.+. +.|+|++++|-
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~---g~~v-~i~g~d~~~--~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi 74 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA---GLVV-RIIGRDRSA--ATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPI 74 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc---CCeE-EEEeecCcH--HHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccH
Confidence 58999999999999999888875 5543 244444432 1222334456531111222 33333 47999999998
Q ss_pred CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHH
Q 017143 85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPP 142 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~ 142 (376)
..-.+++.+.... -.+..++==-.+....-...+.+.. .. ++ -+++-..-|.|.
T Consensus 75 ~~~~~~l~~l~~~-l~~g~iv~Dv~S~K~~v~~a~~~~~-~~-~~-~~vg~HPM~G~~ 128 (279)
T COG0287 75 EATEEVLKELAPH-LKKGAIVTDVGSVKSSVVEAMEKYL-PG-DV-RFVGGHPMFGPE 128 (279)
T ss_pred HHHHHHHHHhccc-CCCCCEEEecccccHHHHHHHHHhc-cC-CC-eeEecCCCCCCc
Confidence 7766666654421 1222333233333444444444444 22 33 556666666665
No 198
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.60 E-value=0.0094 Score=55.31 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=49.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
.+|||||+|.+|+.....+... +.+|++ +|+++.. ... .. ....+++++++. .|+|++++|...
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~---G~~V~~-~d~~~~~---~~~-----~~--~~~~~l~ell~~--aDiVil~lP~t~ 210 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF---GATITA-YDAYPNK---DLD-----FL--TYKDSVKEAIKD--ADIISLHVPANK 210 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEE-EeCChhH---hhh-----hh--hccCCHHHHHhc--CCEEEEeCCCcH
Confidence 5899999999999988888765 788774 6887652 111 11 244689999987 899999999775
Q ss_pred c
Q 017143 87 H 87 (376)
Q Consensus 87 h 87 (376)
+
T Consensus 211 ~ 211 (330)
T PRK12480 211 E 211 (330)
T ss_pred H
Confidence 3
No 199
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.60 E-value=0.024 Score=51.09 Aligned_cols=134 Identities=17% Similarity=0.225 Sum_probs=80.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHH---HHhhCCCCCEEEEe
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQ---ELLDSGLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~l~~~~~D~V~i~ 81 (376)
.+++|+|+|..|...++-.+++ +.++++|...+..+ ++..+.+|-+ +..+.+-+ ++... .|.++.+
T Consensus 183 ~~vgI~GlGGLGh~aVq~AKAM---G~rV~vis~~~~kk----eea~~~LGAd~fv~~~~d~d~~~~~~~~--~dg~~~~ 253 (360)
T KOG0023|consen 183 KWVGIVGLGGLGHMAVQYAKAM---GMRVTVISTSSKKK----EEAIKSLGADVFVDSTEDPDIMKAIMKT--TDGGIDT 253 (360)
T ss_pred cEEEEecCcccchHHHHHHHHh---CcEEEEEeCCchhH----HHHHHhcCcceeEEecCCHHHHHHHHHh--hcCccee
Confidence 6899999999888777766777 89999765443332 2333344544 11232332 22222 5665555
Q ss_pred CC--CCccHHHHHHHHcCCCCCeEEE---ecCCCC------------------CHHHHHHHHHHHHhCCCeEEEEeeccc
Q 017143 82 TP--NMTHYQILMDIINHPKPHHVLV---EKPLCT------------------TVADCKKVVDAARKRPDILVQVGLEYR 138 (376)
Q Consensus 82 t~--~~~h~~~~~~al~~~~g~~Vl~---EKP~a~------------------~~~e~~~l~~~a~~~~~~~~~v~~~~r 138 (376)
++ ..--.+.+...++. +|+-|++ |+|+-. +..|.+|+++.+ .++++...+-...-
T Consensus 254 v~~~a~~~~~~~~~~lk~-~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~-a~~~ik~~IE~v~~ 331 (360)
T KOG0023|consen 254 VSNLAEHALEPLLGLLKV-NGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFV-ARGLIKSPIELVKL 331 (360)
T ss_pred eeeccccchHHHHHHhhc-CCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHH-HcCCCcCceEEEeh
Confidence 55 33346677778876 5888887 555443 458999999999 55576655443221
Q ss_pred cCHHHHHHHHHHHcC
Q 017143 139 YMPPVAKLIQIVKSG 153 (376)
Q Consensus 139 ~~p~~~~~k~~i~~g 153 (376)
+ .+..+-+.+++|
T Consensus 332 -~-~v~~a~erm~kg 344 (360)
T KOG0023|consen 332 -S-EVNEAYERMEKG 344 (360)
T ss_pred -h-HHHHHHHHHHhc
Confidence 1 244455555543
No 200
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=96.59 E-value=0.011 Score=55.81 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=65.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC-CC--CC---------------cc-
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD-WP--LK---------------VF- 63 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~-~~--~~---------------~~- 63 (376)
|+||||.|.|+||+..++.+... .++++++|-|+..+.. ...-+-+ -+| ++ +. ++
T Consensus 85 ~~kvgInGFGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~-~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~ 161 (421)
T PLN02272 85 KTKIGINGFGRIGRLVLRIATSR--DDIEVVAVNDPFIDAK-YMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTS 161 (421)
T ss_pred ceEEEEECcCHHHHHHHHHHhhc--CCcEEEEecCCCCCHH-HHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEe
Confidence 47999999999999888776543 6899999998643321 2222211 111 11 11 11
Q ss_pred -CCHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143 64 -PGHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL 109 (376)
Q Consensus 64 -~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~ 109 (376)
.+.+++-.. .++|+|+-||......+.+..++++|+ |-|++..|.
T Consensus 162 ~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGA-kkVVIdap~ 208 (421)
T PLN02272 162 KRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGA-KKVVISAPS 208 (421)
T ss_pred cCCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCC-CEEEECCCC
Confidence 123333221 269999999999999999999999542 679999883
No 201
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.58 E-value=0.017 Score=48.40 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=27.5
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
||+|||+|.+|...+..+... ++.-+.++|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~---Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS---GVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCE
Confidence 689999999999998888875 666566888876
No 202
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.55 E-value=0.013 Score=53.08 Aligned_cols=134 Identities=15% Similarity=0.135 Sum_probs=74.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhC-CCCCEEEEeC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDS-GLCDVVVVST 82 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~-~~~D~V~i~t 82 (376)
..++.|||+|..|+..+..+... +++-+.|++|+.+ ++++++++++.. +..+...+++... .+.|+||-||
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~---G~~~i~I~nRt~~---ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaT 198 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASL---GVTDITVINRNPD---KLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTV 198 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHc---CCCeEEEEeCCHH---HHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECC
Confidence 35899999999999988888876 6666678899987 677777765421 1122322332111 3489999999
Q ss_pred CCCccHHHHH-H-H----H-cCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHH
Q 017143 83 PNMTHYQILM-D-I----I-NHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQI 149 (376)
Q Consensus 83 ~~~~h~~~~~-~-a----l-~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~ 149 (376)
|-....+... . . + ..-....++.+ +.-++.+ -.|.+.|++ .|..+.-|.......+....+-+
T Consensus 199 p~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D--~vY~P~~-T~ll~~A~~-~G~~~~~Gl~MLv~Qa~~~f~lw 268 (282)
T TIGR01809 199 PADVPADYVDLFATVPFLLLKRKSSEGIFLD--AAYDPWP-TPLVAIVSA-AGWRVISGLQMLLHQGFAQFEQW 268 (282)
T ss_pred CCCCCCCHHHhhhhhhhhccccCCCCcEEEE--EeeCCCC-CHHHHHHHH-CCCEEECcHHHHHHHHHHHHHHH
Confidence 9654322111 0 0 0 00001223322 1111222 235566634 36777777666665555544443
No 203
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.54 E-value=0.0082 Score=50.56 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=56.4
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh--------cCCC----------CCccCCHHHH
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA--------FDWP----------LKVFPGHQEL 69 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~--------~~~~----------~~~~~~~~~~ 69 (376)
||+|||+|.+|......++.. +++|+ ++|++++.++++.+..++ ..+. +...+|++++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA---GYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT---TSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH
Confidence 699999999999887777775 88866 789999876554332221 1110 2356777777
Q ss_pred hhCCCCCEEEEeCCCCccHHHHH-HHHc-CCCCCeEEEecCCCCCHHH
Q 017143 70 LDSGLCDVVVVSTPNMTHYQILM-DIIN-HPKPHHVLVEKPLCTTVAD 115 (376)
Q Consensus 70 l~~~~~D~V~i~t~~~~h~~~~~-~al~-~~~g~~Vl~EKP~a~~~~e 115 (376)
. + .|+|+=+.|......... +-|+ .....-|++----+.++.+
T Consensus 77 ~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~ 121 (180)
T PF02737_consen 77 V-D--ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE 121 (180)
T ss_dssp C-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred h-h--hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence 6 3 788888888765533322 2222 1112335554444555554
No 204
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.53 E-value=0.012 Score=49.32 Aligned_cols=76 Identities=18% Similarity=0.116 Sum_probs=49.5
Q ss_pred eEEEEeCChhh--HHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH----hcCCC--CCccCCHHHHhhCCCCCEEE
Q 017143 8 KYGIIGMGMMG--REHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN----AFDWP--LKVFPGHQELLDSGLCDVVV 79 (376)
Q Consensus 8 ~v~iiG~G~~g--~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~l~~~~~D~V~ 79 (376)
||+|||.|+.- ......+.....-...-+.++|+|+++++...++++ +.+.+ +..++|.+++|+. .|.|+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g--ADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG--ADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT--ESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC--CCEEE
Confidence 79999999853 333333433322233346689999999876655554 55666 3568999999986 89999
Q ss_pred EeCCCC
Q 017143 80 VSTPNM 85 (376)
Q Consensus 80 i~t~~~ 85 (376)
......
T Consensus 79 ~~irvG 84 (183)
T PF02056_consen 79 NQIRVG 84 (183)
T ss_dssp E---TT
T ss_pred EEeeec
Confidence 988765
No 205
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=96.51 E-value=0.015 Score=56.60 Aligned_cols=90 Identities=21% Similarity=0.243 Sum_probs=62.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC---HHHHhhCCCCCEEEEeC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG---HQELLDSGLCDVVVVST 82 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~D~V~i~t 82 (376)
.-|+.|||.|..|...+..+.+....+++++|++|.++.. . ..-.|+| ++.+ +.+++.+.++|-|+|+.
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~---~---~~i~g~p--Vlg~~~~l~~~i~~~~id~ViIa~ 196 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSD---R---VEVAGLP--VLGKLDDLVELVRAHRVDEVIIAL 196 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCccc---c---cccCCCc--ccCCHHHHHHHHHhCCCCEEEEec
Confidence 4689999999999988888877644689999999876542 1 1224665 5544 55666677899999998
Q ss_pred CCCccH---HHHHHHHcCCCCCeEEE
Q 017143 83 PNMTHY---QILMDIINHPKPHHVLV 105 (376)
Q Consensus 83 ~~~~h~---~~~~~al~~~~g~~Vl~ 105 (376)
|...+. +++..|-+ .|..|.+
T Consensus 197 p~~~~~~~~~ll~~~~~--~gv~V~~ 220 (445)
T TIGR03025 197 PLSEEARILELLLQLRD--LGVDVRL 220 (445)
T ss_pred CcccHHHHHHHHHHHHh--cCCEEEE
Confidence 876543 33444545 5565554
No 206
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.49 E-value=0.0063 Score=56.64 Aligned_cols=137 Identities=10% Similarity=0.081 Sum_probs=79.6
Q ss_pred ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t~ 83 (376)
++||+|||+ |..|...++.|.+..-|.++++++...... .+.+. -.+.. ..+.+.+ ..+. ++|+|+.|+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~----g~~l~-~~g~~-i~v~d~~~~~~~--~vDvVf~A~g 72 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSA----GKELS-FKGKE-LKVEDLTTFDFS--GVDIALFSAG 72 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccC----CCeee-eCCce-eEEeeCCHHHHc--CCCEEEECCC
Confidence 369999995 889999998888721278899998754322 11111 01222 2223332 2233 5999999999
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecCCCCCHH----------HHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcC
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVA----------DCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSG 153 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~----------e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g 153 (376)
+....+++.++++ +|. +.++-..+.-.+ --..+.. + .+.+ +..+.++.-......++-+.+.+
T Consensus 73 ~g~s~~~~~~~~~--~G~-~VIDlS~~~R~~~~~p~~lpevn~~~i~~-~-~~~~--iVanp~C~~t~~~l~l~pL~~~~ 145 (334)
T PRK14874 73 GSVSKKYAPKAAA--AGA-VVIDNSSAFRMDPDVPLVVPEVNPEALAE-H-RKKG--IIANPNCSTIQMVVALKPLHDAA 145 (334)
T ss_pred hHHHHHHHHHHHh--CCC-EEEECCchhhcCCCCCeEcCCcCHHHHhh-h-hcCC--eEECccHHHHHHHHHHHHHHHhc
Confidence 9999999999999 777 555332221111 1112222 2 1113 33444444455666677777766
Q ss_pred CCCc
Q 017143 154 SIGQ 157 (376)
Q Consensus 154 ~iG~ 157 (376)
.|-+
T Consensus 146 ~i~~ 149 (334)
T PRK14874 146 GIKR 149 (334)
T ss_pred CceE
Confidence 6644
No 207
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=96.46 E-value=0.018 Score=53.18 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=66.4
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcCC---C--------------CCcc--
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFDW---P--------------LKVF-- 63 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~~---~--------------~~~~-- 63 (376)
++||||.|+|.||+..++.+... ++++++++.|+..+.. ...-+-+ -||- + ++++
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~--~~~~ivaind~~~~~~-~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~ 78 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDW--PELEFVQINDPAGDAA-TLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQN 78 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCHH-HHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEec
Confidence 48999999999999888887765 7899999998543211 2222211 1110 0 1111
Q ss_pred CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143 64 PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP 108 (376)
Q Consensus 64 ~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP 108 (376)
.+.+++-.. ++|+|+-||......+.+..++++| -|-|.+--|
T Consensus 79 ~~~~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aG-ak~V~iSap 121 (334)
T PRK08955 79 KAIADTDWS-GCDVVIEASGVMKTKALLQAYLDQG-VKRVVVTAP 121 (334)
T ss_pred CChhhCCcc-CCCEEEEccchhhcHHHHHHHHHCC-CEEEEECCC
Confidence 244444443 6999999999999999999999954 256766666
No 208
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.44 E-value=0.0094 Score=54.53 Aligned_cols=64 Identities=17% Similarity=0.349 Sum_probs=48.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.+|||||+|.||+.....++.. +.++++ +|++... .+.. ..+.++++++++ .|+|+++.|..
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af---G~~V~~-~~r~~~~----------~~~~-~~~~~l~ell~~--aDiv~~~lp~t 184 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF---GMNIYA-YTRSYVN----------DGIS-SIYMEPEDIMKK--SDFVLISLPLT 184 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEE-ECCCCcc----------cCcc-cccCCHHHHHhh--CCEEEECCCCC
Confidence 46899999999999888776665 888774 6776431 1332 236789999987 89999999965
Q ss_pred c
Q 017143 86 T 86 (376)
Q Consensus 86 ~ 86 (376)
.
T Consensus 185 ~ 185 (303)
T PRK06436 185 D 185 (303)
T ss_pred c
Confidence 3
No 209
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.44 E-value=0.01 Score=55.87 Aligned_cols=62 Identities=27% Similarity=0.436 Sum_probs=47.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
-.+|||||+|.+|+.....+... +.++.+ ||+... . . +.. ..+.++++++++ .|+|++++|-
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~---G~~V~~-~dp~~~---~-~------~~~-~~~~~L~ell~~--sDiI~lh~PL 177 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEAL---GIKTLL-CDPPRA---D-R------GDE-GDFRSLDELVQE--ADILTFHTPL 177 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEE-ECCccc---c-c------ccc-cccCCHHHHHhh--CCEEEEeCCC
Confidence 46899999999999988888876 899875 676432 0 0 111 246789999987 7999999993
No 210
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.43 E-value=0.07 Score=52.62 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=82.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHhcCC-C----------CCccCCH
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANAFDW-P----------LKVFPGH 66 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~~~~-~----------~~~~~~~ 66 (376)
.-||||||+|.||......++.. +++|+ ++|++++.++++.+ +.+ .|. . +...+++
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~a---G~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~-~G~~~~~~~~~~~~~i~~~~~~ 81 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQA---GHTVL-LYDARAGAAAAARDGIAARLAKLVE-KGKLTAEQADAALARLRPVEAL 81 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHhCeEEeCCH
Confidence 35799999999999988877764 88876 79999997655421 121 121 0 2355777
Q ss_pred HHHhhCCCCCEEEEeCCCCccHHHHHH-HHcC-CCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec--------
Q 017143 67 QELLDSGLCDVVVVSTPNMTHYQILMD-IINH-PKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE-------- 136 (376)
Q Consensus 67 ~~~l~~~~~D~V~i~t~~~~h~~~~~~-al~~-~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~-------- 136 (376)
+++ . +.|+|+-+.|.........- .++. .....|+.----+.++. +|...+ .+.+..+-+.|-
T Consensus 82 ~~~-~--~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~-~~p~r~~G~hff~Pa~v~~L 154 (507)
T PRK08268 82 ADL-A--DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAAL-KHPERVAGLHFFNPVPLMKL 154 (507)
T ss_pred HHh-C--CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhc-CCcccEEEEeecCCcccCee
Confidence 663 4 48999999999877655431 1220 02334554333455665 455555 332321111111
Q ss_pred -------cccCHHHHHHHHHHHcCCCCceE
Q 017143 137 -------YRYMPPVAKLIQIVKSGSIGQVK 159 (376)
Q Consensus 137 -------~r~~p~~~~~k~~i~~g~iG~i~ 159 (376)
.--...+.+++.+++ .+|+.-
T Consensus 155 vEvv~g~~Ts~~~~~~~~~l~~--~lgk~p 182 (507)
T PRK08268 155 VEVVSGLATDPAVADALYALAR--AWGKTP 182 (507)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH--HcCCce
Confidence 112346677777776 477554
No 211
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.43 E-value=0.014 Score=52.43 Aligned_cols=119 Identities=19% Similarity=0.196 Sum_probs=75.2
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH 87 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h 87 (376)
++.|+|+|..++..+.++... ++.-+.|++|+++ ++++++++++++ . . ++ +.....|+||-|||-..+
T Consensus 124 ~vlilGaGGaarAi~~aL~~~---g~~~i~i~nR~~~---~a~~la~~~~~~--~-~--~~-~~~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA---GFTDGTIVARNEK---TGKALAELYGYE--W-R--PD-LGGIEADILVNVTPIGMA 191 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCHH---HHHHHHHHhCCc--c-h--hh-cccccCCEEEECCccccC
Confidence 899999999999988888876 6655668999987 677888776543 1 1 12 222348999999996654
Q ss_pred H-------HHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143 88 Y-------QILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ 148 (376)
Q Consensus 88 ~-------~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~ 148 (376)
. .+-...+. .+ .+.++ +|.- -.|.+.|+++ |..+.-|............+-
T Consensus 192 ~~~~~~~~pi~~~~l~--~~-~~v~D~vY~P~~------T~ll~~A~~~-G~~~i~Gl~MLi~Qa~~~f~l 252 (272)
T PRK12550 192 GGPEADKLAFPEAEID--AA-SVVFDVVALPAE------TPLIRYARAR-GKTVITGAEVIALQAVEQFVL 252 (272)
T ss_pred CCCccccCCCCHHHcC--CC-CEEEEeecCCcc------CHHHHHHHHC-cCeEeCCHHHHHHHHHHHHHH
Confidence 2 12223344 33 33333 3431 2366666444 778777776665554444443
No 212
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.42 E-value=0.034 Score=53.54 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=55.0
Q ss_pred eeEEEEeCChhhHH--HHHHhhhh-cCCCcEEEEEeCCChhhHHHHHHHHH----hcCCC--CCccCCHHHHhhCCCCCE
Q 017143 7 VKYGIIGMGMMGRE--HFINLHHL-RSQGVSVVCIADPHLQSRQQALKLAN----AFDWP--LKVFPGHQELLDSGLCDV 77 (376)
Q Consensus 7 ~~v~iiG~G~~g~~--~~~~~~~~-~~~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~l~~~~~D~ 77 (376)
+||+|||+|.+|.. ++..+... .-.+.+|+ ++|+++++++......+ ..+.+ +..++|+++.+++ .|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~--AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG--ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC--CCE
Confidence 58999999998874 33234321 11455654 78999987655443332 23332 3457888999986 899
Q ss_pred EEEeCCCCccHHHHH
Q 017143 78 VVVSTPNMTHYQILM 92 (376)
Q Consensus 78 V~i~t~~~~h~~~~~ 92 (376)
|+++.+...+.....
T Consensus 78 Vi~ai~~~~~~~~~~ 92 (423)
T cd05297 78 VINTIQVGGHEYTET 92 (423)
T ss_pred EEEeeEecCccchhh
Confidence 999999876655554
No 213
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.40 E-value=0.013 Score=54.10 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=49.3
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH--H---HhcCCC--CCccCCHHHHhhCC
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL--A---NAFDWP--LKVFPGHQELLDSG 73 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--~---~~~~~~--~~~~~~~~~~l~~~ 73 (376)
|++-++.||+|||+|.+|......++.. .-.+ +.++|++++.. +++.+ . ..++.. +..++|+++ +++
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~--gl~~-i~LvDi~~~~~-~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l~~- 74 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLK--NLGD-VVLFDIVKNIP-QGKALDISHSNVIAGSNSKVIGTNNYED-IAG- 74 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhC--CCCe-EEEEeCCCchh-hHHHHHHHhhhhccCCCeEEEECCCHHH-hCC-
Confidence 7777788999999999998766655553 2246 77899998743 22222 1 112322 344578864 444
Q ss_pred CCCEEEEeCC
Q 017143 74 LCDVVVVSTP 83 (376)
Q Consensus 74 ~~D~V~i~t~ 83 (376)
.|+|+++..
T Consensus 75 -aDiVI~tag 83 (321)
T PTZ00082 75 -SDVVIVTAG 83 (321)
T ss_pred -CCEEEECCC
Confidence 899999763
No 214
>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]
Probab=96.39 E-value=0.023 Score=52.42 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=104.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC---CccCCHHHHhhC-CCCCEEEEe
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL---KVFPGHQELLDS-GLCDVVVVS 81 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~-~~~D~V~i~ 81 (376)
+-+|.++|.|++.+..+.-+.+. .+++|+.. ++... .+++++...++.. .+.+.-..|... ...|+|+--
T Consensus 2 ~~~vlllgsg~v~~p~~d~ls~~--~dv~vtva-~~~~~---~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSL 75 (445)
T KOG0172|consen 2 KKGVLLLGSGFVSRPVADFLSRK--KDVNVTVA-SRTLK---DAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISL 75 (445)
T ss_pred CcceEEecCccccchHHHHHhhc--CCceEEEe-hhhHH---HHHHHhcCCCccceEEEccchHHHHHhhhcccceeeee
Confidence 46899999999999888878777 88998854 44443 6888888766551 222221122221 238999999
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH----HcCCCCc
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV----KSGSIGQ 157 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i----~~g~iG~ 157 (376)
+|...|.-+++.|+. ..+|+--- +-.-.|.++|-+.+ ...|..++- ..- +.|....+-++= ....+|+
T Consensus 76 lP~t~h~lVaK~~i~--~~~~~vts---Syv~pe~~~L~~~~-v~AG~ti~~-e~g-ldpGidhm~a~~ti~~vh~hgg~ 147 (445)
T KOG0172|consen 76 LPYTFHPLVAKGCII--TKEDSVTS---SYVDPELEELEKAA-VPAGSTIMN-EIG-LDPGIDHMPAMKTIDLVHEHGGK 147 (445)
T ss_pred ccchhhHHHHHHHHH--hhcccccc---cccCHHHHhhhhhc-cCCCceEec-ccc-cCcchhhhhhhccchHHHhhcce
Confidence 999999999999999 77776432 22446788888888 666866554 333 888877765432 1235789
Q ss_pred eEEEEEeeccCCcc
Q 017143 158 VKMVAIREHRFPFL 171 (376)
Q Consensus 158 i~~~~~~~~~~~~~ 171 (376)
+.++..++.+.+.+
T Consensus 148 i~sf~sycGglpap 161 (445)
T KOG0172|consen 148 IKSFKSYCGGLPAP 161 (445)
T ss_pred eeehhhhcCCccCh
Confidence 98888766655543
No 215
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.38 E-value=0.008 Score=57.02 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=51.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEe-----CCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIA-----DPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~-----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i 80 (376)
..+|+|||+|.+|+.|...++. .+++++.-. |.+... .+.+.+-|++ + .++++++.. .|+|++
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrd---SGvnVvvglr~~~id~~~~s----~~kA~~dGF~--v-~~~~Ea~~~--ADvVvi 103 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRD---SGLDISYALRKEAIAEKRAS----WRKATENGFK--V-GTYEELIPQ--ADLVIN 103 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCcc---ccceeEEeccccccccccch----HHHHHhcCCc--c-CCHHHHHHh--CCEEEE
Confidence 4689999999999987766555 488877222 222222 2223334765 3 679999877 899999
Q ss_pred eCCCCccHHHHH
Q 017143 81 STPNMTHYQILM 92 (376)
Q Consensus 81 ~t~~~~h~~~~~ 92 (376)
.+|...|..+-.
T Consensus 104 LlPDt~q~~v~~ 115 (487)
T PRK05225 104 LTPDKQHSDVVR 115 (487)
T ss_pred cCChHHHHHHHH
Confidence 999987766543
No 216
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.35 E-value=0.011 Score=54.57 Aligned_cols=66 Identities=24% Similarity=0.400 Sum_probs=48.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.++||||+|.||+...+.++.. +.+|. .+++.+.+ .. .++.+. .|-++++++++ .|+|++.+|-.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~F---gm~v~-y~~~~~~~--~~---~~~~~~---~y~~l~ell~~--sDii~l~~Plt 211 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGF---GMKVL-YYDRSPNP--EA---EKELGA---RYVDLDELLAE--SDIISLHCPLT 211 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC---CCEEE-EECCCCCh--HH---HhhcCc---eeccHHHHHHh--CCEEEEeCCCC
Confidence 36899999999999988888754 88876 47887641 11 223333 34449999998 79999999954
No 217
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.35 E-value=0.029 Score=54.57 Aligned_cols=92 Identities=22% Similarity=0.203 Sum_probs=60.7
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-hhHHH-HHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-QSRQQ-ALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t 82 (376)
+..++.|+|.|.+|......|++. +.+|+ ++|++. +..+. .+++ .+.|+.+...+..++.+. ++|+|++++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~---G~~V~-~~d~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~--~~d~vv~~~ 76 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL---GAKVI-LTDEKEEDQLKEALEEL-GELGIELVLGEYPEEFLE--GVDLVVVSP 76 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCCchHHHHHHHHHH-HhcCCEEEeCCcchhHhh--cCCEEEECC
Confidence 457899999999999877778775 78876 567664 22211 1222 344654111122334443 389999998
Q ss_pred CCCccHHHHHHHHcCCCCCeEEE
Q 017143 83 PNMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 83 ~~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
......+.+.+|.+ .|++|+-
T Consensus 77 g~~~~~~~~~~a~~--~~i~~~~ 97 (450)
T PRK14106 77 GVPLDSPPVVQAHK--KGIEVIG 97 (450)
T ss_pred CCCCCCHHHHHHHH--CCCcEEe
Confidence 87666778888888 8888875
No 218
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.35 E-value=0.034 Score=52.03 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=84.9
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcE---EEEEeCCChhhHHHHHHHHHhc-CCCCCccC--CHHHHhhCCCCCEEE
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVS---VVCIADPHLQSRQQALKLANAF-DWPLKVFP--GHQELLDSGLCDVVV 79 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~---~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~l~~~~~D~V~ 79 (376)
++|||||+ |..|...+..+.++ +++. ++.+.+... .++. ..+ |.....++ +.++ +. ++|+|+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~--~~f~~~~l~~~ss~~s-----g~~~-~~f~g~~~~v~~~~~~~~-~~--~~Divf 70 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEE--NDFDLIEPVFFSTSQA-----GGAA-PSFGGKEGTLQDAFDIDA-LK--KLDIII 70 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhC--CCCCcCcEEEecchhh-----CCcc-cccCCCcceEEecCChhH-hc--CCCEEE
Confidence 79999995 88999998866666 6777 776443211 1121 111 11112333 2233 33 499999
Q ss_pred EeCCCCccHHHHHHHHcCCCCCe-EEEec----------CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143 80 VSTPNMTHYQILMDIINHPKPHH-VLVEK----------PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ 148 (376)
Q Consensus 80 i~t~~~~h~~~~~~al~~~~g~~-Vl~EK----------P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~ 148 (376)
.|+|+....+++.++.+ +|.. +.++- |+....--...|.. . .+.|..+..+.++.-......++-
T Consensus 71 ~a~~~~~s~~~~~~~~~--aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~-~~~g~~iIanPnC~tt~~~laL~P 146 (369)
T PRK06598 71 TCQGGDYTNEVYPKLRA--AGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-A-LANGVKTFVGGNCTVSLMLMALGG 146 (369)
T ss_pred ECCCHHHHHHHHHHHHh--CCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-h-hhcCCCEEEcCChHHHHHHHHHHH
Confidence 99999999999999999 7763 55543 33332222223433 2 223644555767766777788888
Q ss_pred HHHcCCCCceEE
Q 017143 149 IVKSGSIGQVKM 160 (376)
Q Consensus 149 ~i~~g~iG~i~~ 160 (376)
+.+.+.|-+|..
T Consensus 147 L~~~~~i~~viV 158 (369)
T PRK06598 147 LFKNDLVEWVSV 158 (369)
T ss_pred HHhcCCceEEEE
Confidence 888766655433
No 219
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.07 Score=49.48 Aligned_cols=109 Identities=11% Similarity=0.170 Sum_probs=66.5
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC-C-CCCccCCHHHHhhC-CCCCEEEEe
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD-W-PLKVFPGHQELLDS-GLCDVVVVS 81 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~-~~~D~V~i~ 81 (376)
++.-||+||++-||+..+.++... ++. |+|+.|+.+ +..++.++.+ - .+.-+.|++|+.+. ..|.-|++.
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~---G~~-VavyNRt~~---ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lM 74 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADH---GYT-VAVYNRTTE---KTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLM 74 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhc---Cce-EEEEeCCHH---HHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEE
Confidence 357899999999999998888775 888 558999998 5666665543 1 13456678888764 234444433
Q ss_pred CCC----CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143 82 TPN----MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA 123 (376)
Q Consensus 82 t~~----~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a 123 (376)
.-. +.-.+..+..|+ .| .|+++--=+.-.+-.++..++.
T Consensus 75 VkAG~~VD~~I~~L~p~Le--~g-DIiIDGGNs~y~DT~RR~~eL~ 117 (473)
T COG0362 75 VKAGTPVDAVIEQLLPLLE--KG-DIIIDGGNSHYKDTIRRNKELS 117 (473)
T ss_pred EecCCcHHHHHHHHHhhcC--CC-CEEEeCCCcCCchHHHHHHHHH
Confidence 221 333333344455 33 5666655554445555555555
No 220
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.33 E-value=0.038 Score=49.85 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=77.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC--CCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDW--PLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
-++.|+|+|.+|+..+..+... +.+++ +++++++ ++++++++++- .... .++++... .+.|+|+.+||.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~---g~~v~-v~~R~~~---~~~~la~~~~~~~~~~~-~~~~~~~~-~~~DivInatp~ 188 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA---DCNVI-IANRTVS---KAEELAERFQRYGEIQA-FSMDELPL-HRVDLIINATSA 188 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC---CCEEE-EEeCCHH---HHHHHHHHHhhcCceEE-echhhhcc-cCccEEEECCCC
Confidence 4799999999999998888875 56654 7889887 45555554321 0112 23444322 358999999997
Q ss_pred CccHH-----HHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHH
Q 017143 85 MTHYQ-----ILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQI 149 (376)
Q Consensus 85 ~~h~~-----~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~ 149 (376)
..+.. +....++ .++ ++++ +|..+ .|.+.|++ .|..+.-|............+-+
T Consensus 189 gm~~~~~~~~~~~~~l~--~~~-~v~D~~y~p~~T------~ll~~A~~-~G~~~vdG~~Ml~~Qa~~~f~~w 251 (270)
T TIGR00507 189 GMSGNIDEPPVPAEKLK--EGM-VVYDMVYNPGET------PFLAEAKS-LGTKTIDGLGMLVAQAALAFELW 251 (270)
T ss_pred CCCCCCCCCCCCHHHcC--CCC-EEEEeccCCCCC------HHHHHHHH-CCCeeeCCHHHHHHHHHHHHHHH
Confidence 65432 2244566 544 4454 34322 48888845 48888888776665555544433
No 221
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.27 E-value=0.1 Score=51.40 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=64.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH--------HHHhcCCC----------CCccCCHHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK--------LANAFDWP----------LKVFPGHQE 68 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--------~~~~~~~~----------~~~~~~~~~ 68 (376)
.||+|||+|.||......++.. +++|+ ++|++++.++++.+ +.++..+. +...+++++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a---G~~V~-l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 81 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA---GHQVL-LYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA 81 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH
Confidence 5799999999999988887764 88876 78999987654421 12211110 235677866
Q ss_pred HhhCCCCCEEEEeCCCCccHHHHHH-HHc-CCCCCeEEEecCCCCCHHH
Q 017143 69 LLDSGLCDVVVVSTPNMTHYQILMD-IIN-HPKPHHVLVEKPLCTTVAD 115 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h~~~~~~-al~-~~~g~~Vl~EKP~a~~~~e 115 (376)
+ . +.|+|+-+.|.........- -|+ ...+..|++----+.++.+
T Consensus 82 l-~--~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~ 127 (503)
T TIGR02279 82 L-A--DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITA 127 (503)
T ss_pred h-C--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHH
Confidence 4 4 48999999998766444321 121 1134456655555666654
No 222
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.016 Score=54.83 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=56.7
Q ss_pred CCceeEEEEeCChhhH--HHHHHhhhhcC-CCcEEEEEeCCChhhHH----HHHHHHHhcCCC--CCccCCHHHHhhCCC
Q 017143 4 NDTVKYGIIGMGMMGR--EHFINLHHLRS-QGVSVVCIADPHLQSRQ----QALKLANAFDWP--LKVFPGHQELLDSGL 74 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~--~~~~~~~~~~~-~~~~~~~v~d~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~l~~~~ 74 (376)
|+++||+|||.|+... ...-.+.+.+. +..+ ++++|.++++.+ .++.+.++.|.+ +..++|.+++|+.
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~e-l~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g-- 77 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRE-LALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG-- 77 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcce-EEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC--
Confidence 3579999999998653 22223333311 3445 568999999886 556667777877 4668899999987
Q ss_pred CCEEEEeCCCCc
Q 017143 75 CDVVVVSTPNMT 86 (376)
Q Consensus 75 ~D~V~i~t~~~~ 86 (376)
.|.|+.+-....
T Consensus 78 AdfVi~~~rvG~ 89 (442)
T COG1486 78 ADFVITQIRVGG 89 (442)
T ss_pred CCEEEEEEeeCC
Confidence 899998877643
No 223
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.20 E-value=0.02 Score=53.67 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=63.9
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCC----CcEEEEEeCCChh--hHHHHHHHHHh-----c--C--CC--CCccCCHH
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQ----GVSVVCIADPHLQ--SRQQALKLANA-----F--D--WP--LKVFPGHQ 67 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~----~~~~~~v~d~~~~--~~~~~~~~~~~-----~--~--~~--~~~~~~~~ 67 (376)
+++||+|||+|.||......+...... +-+ |-+|.++++ ....++.+.+. | | +| +...+|++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~-V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNE-VRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCe-EEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 468999999999999887777765100 123 446666663 11123333321 1 2 22 23467888
Q ss_pred HHhhCCCCCEEEEeCCCCccHHHHHHHHc--CC-CCC-eEEEecCCCC
Q 017143 68 ELLDSGLCDVVVVSTPNMTHYQILMDIIN--HP-KPH-HVLVEKPLCT 111 (376)
Q Consensus 68 ~~l~~~~~D~V~i~t~~~~h~~~~~~al~--~~-~g~-~Vl~EKP~a~ 111 (376)
+++++ .|+|++++|++...+++.+.-. .- .+. -|.|-|=+..
T Consensus 89 eav~~--aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 89 EAVED--ADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred HHHhc--CCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 88876 7999999999988777766432 10 232 3556776653
No 224
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.20 E-value=0.012 Score=54.20 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=47.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.++||||+|.+|+..++.++.. +.+|.+ +|+.... ...++ .+.+++++|+. .|+|++++|-.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f---gm~V~~-~d~~~~~--------~~~~~---~~~~l~ell~~--sDvv~lh~Plt 207 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF---GAKVVY-YSTSGKN--------KNEEY---ERVSLEELLKT--SDIISIHAPLN 207 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc---CCEEEE-ECCCccc--------cccCc---eeecHHHHhhc--CCEEEEeCCCC
Confidence 46899999999999988888776 888775 6775321 01132 35689999988 79999999943
No 225
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.023 Score=49.64 Aligned_cols=93 Identities=23% Similarity=0.233 Sum_probs=60.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH-HHHhcCCC-CCccCCHHHHhhC---CCCCEEEEe
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK-LANAFDWP-LKVFPGHQELLDS---GLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~---~~~D~V~i~ 81 (376)
+++.|||+|.+|...++.|... +-+++. .|.+++ ++++ .+.+++.. +....+-.+.|++ .+.|+|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~---g~~Vv~-Id~d~~---~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE---GHNVVL-IDRDEE---RVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC---CCceEE-EEcCHH---HHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 5899999999999999888885 777774 578887 4444 33344433 1223344555554 468999999
Q ss_pred CCCCccHH-HHHHHHcCCCCCeEEEec
Q 017143 82 TPNMTHYQ-ILMDIINHPKPHHVLVEK 107 (376)
Q Consensus 82 t~~~~h~~-~~~~al~~~~g~~Vl~EK 107 (376)
|.++.--. ++..|++. .|.+-.+-|
T Consensus 74 t~~d~~N~i~~~la~~~-~gv~~viar 99 (225)
T COG0569 74 TGNDEVNSVLALLALKE-FGVPRVIAR 99 (225)
T ss_pred eCCCHHHHHHHHHHHHh-cCCCcEEEE
Confidence 99865444 44445553 244544444
No 226
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.19 E-value=0.024 Score=52.29 Aligned_cols=100 Identities=25% Similarity=0.268 Sum_probs=65.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC-C--C--------------CCcc--C
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD-W--P--------------LKVF--P 64 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~-~--~--------------~~~~--~ 64 (376)
+||||-|.|+||+..++.+... +++++++|-|+..+. +...-+-+ -+| + + ++++ .
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~-~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALER--EDVEVVAINDPFMTL-DYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEK 79 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhc--CCeEEEEecCCCCCh-HHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCC
Confidence 8999999999999988886654 789999998843221 12222211 011 0 0 1111 2
Q ss_pred CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143 65 GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC 110 (376)
Q Consensus 65 ~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a 110 (376)
+.+++-. +.++|+|+-||......+.+..++++|+ +-|.+--|+.
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGa-k~V~iSap~~ 125 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGA-KKVIMSAPPK 125 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCC-EEEEeCCCCC
Confidence 3444433 2469999999999999999999999553 5566655643
No 227
>PLN02928 oxidoreductase family protein
Probab=96.18 E-value=0.014 Score=54.61 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=48.3
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH------HhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA------NAFDWPLKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~D~V~i 80 (376)
.++||||+|.||+..+..++.. +.+|++ +|++..+. ....+. ..+......+.++++++.+ .|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af---G~~V~~-~dr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF---GVKLLA-TRRSWTSE-PEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC---CCEEEE-ECCCCChh-hhhhhccccccccccccccCcccCHHHHHhh--CCEEEE
Confidence 5899999999999988888776 788875 68764311 111000 0110000135789999988 799999
Q ss_pred eCCCC
Q 017143 81 STPNM 85 (376)
Q Consensus 81 ~t~~~ 85 (376)
++|-.
T Consensus 233 ~lPlt 237 (347)
T PLN02928 233 CCTLT 237 (347)
T ss_pred CCCCC
Confidence 99954
No 228
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.16 E-value=0.067 Score=47.09 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143 44 QSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV 119 (376)
Q Consensus 44 ~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l 119 (376)
+-+...++.++++|+++ ..++ +.+.+.+ .+|++-|++.+-.+.+++.++-+ .||+|++-|+...+++|....
T Consensus 66 ~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e--~vdilqIgs~~~~n~~LL~~va~--tgkPVilk~G~~~t~~e~~~A 141 (250)
T PRK13397 66 QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD--YLDVIQVGARNMQNFEFLKTLSH--IDKPILFKRGLMATIEEYLGA 141 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh--cCCEEEECcccccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHH
Confidence 34466778888999982 3332 4445544 39999999999999999999999 899999999988999999999
Q ss_pred HHHHHhCCCeEEEEee
Q 017143 120 VDAARKRPDILVQVGL 135 (376)
Q Consensus 120 ~~~a~~~~~~~~~v~~ 135 (376)
++...+.++-.+.+.+
T Consensus 142 ~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 142 LSYLQDTGKSNIILCE 157 (250)
T ss_pred HHHHHHcCCCeEEEEc
Confidence 9988655443344443
No 229
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.15 E-value=0.045 Score=53.52 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=73.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
..+++|+|+|.+|+.....+... +.+++ +++++.+ ++++++++++.. . -+++++-.-.+.|+|+.|||..
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~---G~~V~-i~~R~~~---~~~~la~~~~~~--~-~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARA---GAELL-IFNRTKA---HAEALASRCQGK--A-FPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHC---CCEEE-EEeCCHH---HHHHHHHHhccc--e-echhHhcccCCCCEEEEcCCCC
Confidence 35899999999999888888775 56765 6788876 566666665532 2 2233332224589999999988
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHH
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKL 146 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~ 146 (376)
...+ ..+. +++++= ..++.+.. +.+.|++ .|..+.-|.......+..+.
T Consensus 402 ~~~~---~~l~-----~~v~D~--~Y~P~~T~-ll~~A~~-~G~~~~~G~~Ml~~Qa~~~f 450 (477)
T PRK09310 402 VTIP---KAFP-----PCVVDI--NTLPKHSP-YTQYARS-QGSSIIYGYEMFAEQALLQF 450 (477)
T ss_pred Ccch---hHHh-----hhEEec--cCCCCCCH-HHHHHHH-CcCEEECcHHHHHHHHHHHH
Confidence 7532 2222 144441 11222222 6677744 48888777666554444444
No 230
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.14 E-value=0.018 Score=53.20 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=48.1
Q ss_pred ceeEEEEeCChhhHHHHHHhh-hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
-.++||||+|.||+...+.++ .. +.+|+ ++|+.... +....+++ .+.+++++|+. .|+|++++|-
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f---gm~V~-~~~~~~~~-----~~~~~~~~---~~~~l~ell~~--sDvv~lh~pl 210 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF---NMPIL-YNARRHHK-----EAEERFNA---RYCDLDTLLQE--SDFVCIILPL 210 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC---CCEEE-EECCCCch-----hhHHhcCc---EecCHHHHHHh--CCEEEEeCCC
Confidence 368999999999998887776 55 77877 46765421 11223453 35699999987 8999999994
Q ss_pred C
Q 017143 85 M 85 (376)
Q Consensus 85 ~ 85 (376)
.
T Consensus 211 t 211 (323)
T PRK15409 211 T 211 (323)
T ss_pred C
Confidence 3
No 231
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.12 E-value=0.042 Score=47.18 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=29.2
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
+.-||.|||+|.+|...+..|... ++.-+.++|.|.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~---Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA---GVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc---CCCeEEEecCCE
Confidence 357899999999999999888886 665556788874
No 232
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.12 E-value=0.12 Score=47.43 Aligned_cols=125 Identities=14% Similarity=0.201 Sum_probs=74.8
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH 87 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h 87 (376)
++.|+|+|.+|...+..++.. +.+.+.+++.++++++.+. .+. .++.-++ ....+|+|+-++....-
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~---G~~~v~~~~~~~~rl~~a~----~~~----~i~~~~~--~~~g~Dvvid~~G~~~~ 213 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA---GGSPPAVWETNPRRRDGAT----GYE----VLDPEKD--PRRDYRAIYDASGDPSL 213 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc---CCceEEEeCCCHHHHHhhh----hcc----ccChhhc--cCCCCCEEEECCCCHHH
Confidence 689999999999877655554 7777777788777543332 222 2221111 22358999999997766
Q ss_pred HHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc-CHHHHHHHHHHHcCCCC
Q 017143 88 YQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRY-MPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 88 ~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~-~p~~~~~k~~i~~g~iG 156 (376)
.+.+.++++. .|+-|++= .|...+. .... .+ ++.+.-.. .+ ...+..+.+++++|.+-
T Consensus 214 ~~~~~~~l~~-~G~iv~~G~~~~~~~~~~------~~~~-~~-~~~i~~~~--~~~~~~~~~~~~l~~~g~i~ 275 (308)
T TIGR01202 214 IDTLVRRLAK-GGEIVLAGFYTEPVNFDF------VPAF-MK-EARLRIAA--EWQPGDLHAVRELIESGALS 275 (308)
T ss_pred HHHHHHhhhc-CcEEEEEeecCCCccccc------chhh-hc-ceEEEEec--ccchhHHHHHHHHHHcCCCC
Confidence 6778888875 37766653 2322221 1222 22 33333222 22 23577888999988774
No 233
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=96.11 E-value=0.037 Score=51.14 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=64.9
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC-C--C--------------CCcc--
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD-W--P--------------LKVF-- 63 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~-~--~--------------~~~~-- 63 (376)
++||||-|.|+||+..++++... +++++++|-|.... +...-+-+ -+| + + ++++
T Consensus 2 ~~ki~INGfGRIGR~~~r~~~~~--~~~~vvaINd~~~~--~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 2 KTKVAINGFGRIGRMVFRKAIKE--SAFEIVAINASYPS--ETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNN 77 (343)
T ss_pred ceEEEEECcChHHHHHHHHHhhc--CCcEEEEecCCCCH--HHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 38999999999999988886654 78999999886432 22222222 111 0 0 1111
Q ss_pred CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143 64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP 108 (376)
Q Consensus 64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP 108 (376)
.+.+++-. +.++|+|+-||....+.+.+..++++|+ +-|.+--|
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGa-k~V~iSap 122 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGA-KKVILTAP 122 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCC-eEEEeCCC
Confidence 23444433 2369999999999999999999999542 55555544
No 234
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.11 E-value=0.018 Score=54.33 Aligned_cols=62 Identities=32% Similarity=0.550 Sum_probs=47.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
-.+|||||+|.+|+.....+... ++++. ++|+.... . . +. ..+.++++++++ .|+|++++|-
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~---G~~V~-~~Dp~~~~---~-----~-~~--~~~~~l~ell~~--aDiV~lh~Pl 177 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL---GWKVL-VCDPPRQE---A-----E-GD--GDFVSLERILEE--CDVISLHTPL 177 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC---CCEEE-EECCcccc---c-----c-cC--ccccCHHHHHhh--CCEEEEeCcC
Confidence 36899999999999988888876 88977 46764321 1 1 11 246789999987 8999999995
No 235
>PLN02306 hydroxypyruvate reductase
Probab=96.09 E-value=0.022 Score=53.95 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=47.6
Q ss_pred ceeEEEEeCChhhHHHHHHhh-hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCC----------CCCccCCHHHHhhCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDW----------PLKVFPGHQELLDSGL 74 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~ 74 (376)
-.+|||||+|.+|+..++.+. .. +.+|.+ +|+.... ....+...++. ....+.+++++|+.
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~f---Gm~V~~-~d~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~-- 236 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGF---KMNLIY-YDLYQST--RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE-- 236 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC---CCEEEE-ECCCCch--hhhhhhhhhcccccccccccccccccCCHHHHHhh--
Confidence 368999999999999887764 54 788774 6876532 11111112221 01124689999988
Q ss_pred CCEEEEeCCC
Q 017143 75 CDVVVVSTPN 84 (376)
Q Consensus 75 ~D~V~i~t~~ 84 (376)
.|+|++++|-
T Consensus 237 sDiV~lh~Pl 246 (386)
T PLN02306 237 ADVISLHPVL 246 (386)
T ss_pred CCEEEEeCCC
Confidence 7999999984
No 236
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.06 E-value=0.034 Score=51.76 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=29.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
.-+|.|||+|..|...+..|... ++.-+.++|+|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a---Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA---GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCc
Confidence 46899999999999998888886 776677889875
No 237
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.04 E-value=0.079 Score=46.36 Aligned_cols=115 Identities=22% Similarity=0.311 Sum_probs=69.2
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC----------ChhhHHHHHHHHHhcCCCCCcc-----CCHHH
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP----------HLQSRQQALKLANAFDWPLKVF-----PGHQE 68 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 68 (376)
.+.+||+|.|+|.+|+..+..|.+. +.+|++|+|. |.+ ...+..++.|- +..| -+.++
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~---g~~vv~v~D~~g~~~~~~Gld~~---~l~~~~~~~g~-l~~~~~~~~~~~~~ 101 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEA---GAKVVAVSDSDGTIYNPDGLDVP---ALLAYKKEHGS-VLGFPGAERITNEE 101 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCeEECCCCCCHH---HHHHHHHhcCC-cccCCCceecCCcc
Confidence 3568999999999999988888774 8999999998 655 44444444431 1122 13455
Q ss_pred HhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 017143 69 LLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVG 134 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~ 134 (376)
++.. ++|+++=|++...=-.-....++ ..+++|--=.....++.++++ ++ |+.+...
T Consensus 102 i~~~-~~Dvlip~a~~~~i~~~~~~~l~----a~~I~egAN~~~t~~a~~~L~---~r-Gi~~~PD 158 (227)
T cd01076 102 LLEL-DCDILIPAALENQITADNADRIK----AKIIVEAANGPTTPEADEILH---ER-GVLVVPD 158 (227)
T ss_pred ceee-cccEEEecCccCccCHHHHhhce----eeEEEeCCCCCCCHHHHHHHH---HC-CCEEECh
Confidence 6665 58999988876533333333444 247777522111144444432 33 6665443
No 238
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.02 E-value=0.035 Score=51.89 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=47.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC---------------CccCCHHHHh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL---------------KVFPGHQELL 70 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l 70 (376)
++||+|||+|.+|......+... +.+|+. +++++. .+.+. +.|+.+ ...++. +.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~---G~~V~~-~~r~~~----~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 71 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA---GADVTL-IGRARI----GDELR-AHGLTLTDYRGRDVRVPPSAIAFSTDP-AAL 71 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc---CCcEEE-EecHHH----HHHHH-hcCceeecCCCcceecccceeEeccCh-hhc
Confidence 36899999999999888888775 667664 566542 22222 223221 122344 333
Q ss_pred hCCCCCEEEEeCCCCccHHHHHH
Q 017143 71 DSGLCDVVVVSTPNMTHYQILMD 93 (376)
Q Consensus 71 ~~~~~D~V~i~t~~~~h~~~~~~ 93 (376)
. +.|+|++++++....+.+..
T Consensus 72 ~--~~D~vil~vk~~~~~~~~~~ 92 (341)
T PRK08229 72 A--TADLVLVTVKSAATADAAAA 92 (341)
T ss_pred c--CCCEEEEEecCcchHHHHHH
Confidence 3 48999999998766555443
No 239
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=96.02 E-value=0.025 Score=55.04 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=61.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC---CHHHHhhCCCCCEEEEeC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP---GHQELLDSGLCDVVVVST 82 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~D~V~i~t 82 (376)
.-|+.|||+|..|...+..+.+....++++++++|.++.+ ... ..|++ ++. ++.+++++.++|.|+|+.
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~---~~~---~~gvp--Vlg~~~dl~~~i~~~~vd~ViIA~ 199 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDA---RTG---VRGVP--VLGKLDDLEELIREGEVDEVYIAL 199 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCcc---ccc---cCCCC--ccCCHHHHHHHHHhcCCCEEEEee
Confidence 4689999999999988888877644579999999876652 111 14665 444 455667777899999999
Q ss_pred CCCccH---HHHHHHHcCCCCCeEEE
Q 017143 83 PNMTHY---QILMDIINHPKPHHVLV 105 (376)
Q Consensus 83 ~~~~h~---~~~~~al~~~~g~~Vl~ 105 (376)
|...+. +++..|-+ .|..|.+
T Consensus 200 p~~~~~~~~~ll~~~~~--~gv~V~v 223 (451)
T TIGR03023 200 PLAAEDRILELLDALED--LTVDVRL 223 (451)
T ss_pred CcccHHHHHHHHHHHHh--cCCEEEE
Confidence 875542 22333444 4555544
No 240
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.01 E-value=0.045 Score=52.31 Aligned_cols=65 Identities=25% Similarity=0.264 Sum_probs=47.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
-+++|+|+|.+|+..+..++.+ +.+| .++|+++.+ +.+ +...|+. + .+++++++. .|+|+.+|.+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~---Ga~V-iV~d~dp~r---a~~-A~~~G~~--v-~~l~eal~~--aDVVI~aTG~ 277 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL---GARV-IVTEVDPIC---ALQ-AAMDGFR--V-MTMEEAAEL--GDIFVTATGN 277 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEE-EEEcCCchh---hHH-HHhcCCE--e-cCHHHHHhC--CCEEEECCCC
Confidence 5899999999999988888876 6775 478998874 322 2334654 3 367888864 8999988864
No 241
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.98 E-value=0.092 Score=46.94 Aligned_cols=88 Identities=13% Similarity=0.193 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143 43 LQSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK 118 (376)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~ 118 (376)
.+.+...++.++++|+++ ..++ +.+.+. +. +|++-|++..-.+.+++.++.+ .||+|++.++++.+++|...
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~-~~-~d~lkI~s~~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~ 150 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVA-EY-ADILQIGARNMQNFELLKEVGK--QGKPVLLKRGMGNTIEEWLY 150 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHH-hh-CCEEEECcccccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHH
Confidence 344556778889999981 3333 444444 44 8999999999999999999999 89999999999999999999
Q ss_pred HHHHHHhCCCeEEEEe
Q 017143 119 VVDAARKRPDILVQVG 134 (376)
Q Consensus 119 l~~~a~~~~~~~~~v~ 134 (376)
.++..++.++-.+.+.
T Consensus 151 Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 151 AAEYILSSGNGNVILC 166 (260)
T ss_pred HHHHHHHcCCCcEEEE
Confidence 9999965544344443
No 242
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.98 E-value=0.018 Score=55.05 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=47.9
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.++||||+|.+|+..+..+... +.++++ +|+.+.. ...++ ....+++++++. .|+|++++|-.
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~f---Gm~V~~-~d~~~~~--------~~~~~--~~~~~l~ell~~--sDiVslh~Plt 214 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESL---GMRVYF-YDIEDKL--------PLGNA--RQVGSLEELLAQ--SDVVSLHVPET 214 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEE-ECCCccc--------ccCCc--eecCCHHHHHhh--CCEEEEcCCCC
Confidence 35899999999999988888876 889875 6765321 01122 245689999988 79999999953
No 243
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.97 E-value=0.066 Score=46.09 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=79.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccCCHHHHhhCCCCCEEEEeCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
-||.|||.|.+|..-+..|... +..++ |++++.. +..++++++.++.. +.|. .+.+. +.|+|+++|.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~---ga~Vt-Vvsp~~~--~~l~~l~~~~~i~~~~~~~~--~~dl~--~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA---GAQLR-VIAEELE--SELTLLAEQGGITWLARCFD--ADILE--GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC---CCEEE-EEcCCCC--HHHHHHHHcCCEEEEeCCCC--HHHhC--CcEEEEECCCC
Confidence 5899999999998888888775 67766 5566544 24556666555431 2333 23344 48999999998
Q ss_pred C-ccHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143 85 M-THYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS 152 (376)
Q Consensus 85 ~-~h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 152 (376)
. ....+...|-+ +|+.|-+ ..|-- +.=..-+.-+++++.+.+.-+-.---..+.+|+.|++
T Consensus 80 ~~ln~~i~~~a~~--~~ilvn~~d~~e~-----~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 80 EELNRRVAHAARA--RGVPVNVVDDPEL-----CSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred HHHHHHHHHHHHH--cCCEEEECCCccc-----CeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 6 77777777877 7777742 23321 1111111224556666666554444455666666653
No 244
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.92 E-value=0.027 Score=51.61 Aligned_cols=69 Identities=26% Similarity=0.373 Sum_probs=50.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
--+|+|+|+|.||+..+..|... + ..+..+.|.+.+- +.+.+++- -+-|+++++.. .|+|+|++|-.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~F---g-~~i~y~~r~~~~~----~~~~~~~~---~~~d~~~~~~~--sD~ivv~~pLt 228 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPF---G-CVILYHSRTQLPP----EEAYEYYA---EFVDIEELLAN--SDVIVVNCPLT 228 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhc---c-ceeeeecccCCch----hhHHHhcc---cccCHHHHHhh--CCEEEEecCCC
Confidence 35899999999999998888776 4 5555677766532 22333332 26789999988 79999999965
Q ss_pred cc
Q 017143 86 TH 87 (376)
Q Consensus 86 ~h 87 (376)
.+
T Consensus 229 ~~ 230 (336)
T KOG0069|consen 229 KE 230 (336)
T ss_pred HH
Confidence 43
No 245
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.92 E-value=0.047 Score=53.74 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=58.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
-||.|+|+|..|...+..+... +.++++ +|..+.. .+. .++.|+.+....+..+.+.+ +|+|+++..-..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~---G~~v~~-~D~~~~~---~~~-l~~~g~~~~~~~~~~~~l~~--~D~VV~SpGi~~ 82 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF---GARPTV-CDDDPDA---LRP-HAERGVATVSTSDAVQQIAD--YALVVTSPGFRP 82 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEEE-EcCCHHH---HHH-HHhCCCEEEcCcchHhHhhc--CCEEEECCCCCC
Confidence 4899999999999888766654 788775 8876553 223 34467641111223344544 797777665554
Q ss_pred cHHHHHHHHcCCCCCeEEEec
Q 017143 87 HYQILMDIINHPKPHHVLVEK 107 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~EK 107 (376)
..+.+.+|.+ +|++|+-|-
T Consensus 83 ~~p~~~~a~~--~gi~v~~~i 101 (488)
T PRK03369 83 TAPVLAAAAA--AGVPIWGDV 101 (488)
T ss_pred CCHHHHHHHH--CCCcEeeHH
Confidence 5577888888 889998653
No 246
>PRK06988 putative formyltransferase; Provisional
Probab=95.92 E-value=0.028 Score=51.71 Aligned_cols=76 Identities=11% Similarity=0.050 Sum_probs=52.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-----HHHHHHHHhcCCCCCccCC-----HHHHhhCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-----QQALKLANAFDWPLKVFPG-----HQELLDSGLC 75 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~ 75 (376)
|+||+++|.+.+|...+..|.+. ++++++|+...+.+. ...+++|+++|+|+....+ ..+.+....+
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~---~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~~~~ 78 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR---GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAAAAP 78 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC---CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHhcCC
Confidence 37999999999998888888764 688888886532211 2467889999998221122 3345666679
Q ss_pred CEEEEeCCC
Q 017143 76 DVVVVSTPN 84 (376)
Q Consensus 76 D~V~i~t~~ 84 (376)
|+++++.-.
T Consensus 79 Dliv~~~~~ 87 (312)
T PRK06988 79 DFIFSFYYR 87 (312)
T ss_pred CEEEEehhc
Confidence 988877643
No 247
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.90 E-value=0.038 Score=50.86 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=46.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHHh---cCCC-CCccCCHHHHhhCCCCCEEEE
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLANA---FDWP-LKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~---~~~~-~~~~~~~~~~l~~~~~D~V~i 80 (376)
..||+|||+|.+|...+..+... +-..-+.++|++++.. ..+.++..- ++.. +..+++|++ +++ .|+|+|
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~--~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~--adivvi 77 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TAN--SKVVIV 77 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCC--CCEEEE
Confidence 57999999999999877777665 4444455889877633 223333221 1111 233478887 454 899999
Q ss_pred eCC
Q 017143 81 STP 83 (376)
Q Consensus 81 ~t~ 83 (376)
+.-
T Consensus 78 taG 80 (312)
T cd05293 78 TAG 80 (312)
T ss_pred CCC
Confidence 554
No 248
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.89 E-value=0.031 Score=50.61 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=71.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCC-CCccC--CHHHHhhCCCCCEEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWP-LKVFP--GHQELLDSGLCDVVV 79 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~-~~~~~--~~~~~l~~~~~D~V~ 79 (376)
-++.|+|+|..|+..+.++... ++.-+.|++|+.+ +++++++++ +.. +...+ ++++.+. ..|+|+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~---g~~~i~i~nR~~~---ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~--~~divI 199 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTH---GVQKLQVADLDTS---RAQALADVINNAVGREAVVGVDARGIEDVIA--AADGVV 199 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHC---CCCEEEEEcCCHH---HHHHHHHHHhhccCcceEEecCHhHHHHHHh--hcCEEE
Confidence 4799999999999988888876 6666778999987 566666554 211 01111 2233444 389999
Q ss_pred EeCCCCccHH----HHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHH
Q 017143 80 VSTPNMTHYQ----ILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKL 146 (376)
Q Consensus 80 i~t~~~~h~~----~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~ 146 (376)
-+||-..+.. +-...+. .+ +++++ +|.- -.+.+.|++. |..+.-|............
T Consensus 200 NaTp~Gm~~~~~~~~~~~~l~--~~-~~v~D~vY~P~~------T~ll~~A~~~-G~~~~~Gl~MLv~Qa~~~f 263 (283)
T PRK14027 200 NATPMGMPAHPGTAFDVSCLT--KD-HWVGDVVYMPIE------TELLKAARAL-GCETLDGTRMAIHQAVDAF 263 (283)
T ss_pred EcCCCCCCCCCCCCCCHHHcC--CC-cEEEEcccCCCC------CHHHHHHHHC-CCEEEccHHHHHHHHHHHH
Confidence 9999655421 1122334 22 33333 3321 1355556343 6666666655554444433
No 249
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=95.87 E-value=0.1 Score=47.62 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=84.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhc--------------------CCCcEEEEEeCCChhhHH--HHHHHHHhcCCCCC---
Q 017143 7 VKYGIIGMGMMGREHFINLHHLR--------------------SQGVSVVCIADPHLQSRQ--QALKLANAFDWPLK--- 61 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~--------------------~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~--- 61 (376)
+||||+|.|+-+...+..+.-.+ ..++++|+-+|.|..+.. ..+++-++-+...+
T Consensus 1 irvai~GvGncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~~ 80 (351)
T TIGR03450 1 VRVAIVGVGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIAD 80 (351)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeeec
Confidence 69999999998775555432111 137999999999988652 22222222221100
Q ss_pred ------------ccC------------------CHHHHhhCCCCCEEEEeCCCCcc---HHHHHHHHcCCCCCeEEEecC
Q 017143 62 ------------VFP------------------GHQELLDSGLCDVVVVSTPNMTH---YQILMDIINHPKPHHVLVEKP 108 (376)
Q Consensus 62 ------------~~~------------------~~~~~l~~~~~D~V~i~t~~~~h---~~~~~~al~~~~g~~Vl~EKP 108 (376)
+.+ |.-+.|.+..+|+++...|.... .-+|..||+ +|.+-.-=-|
T Consensus 81 vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk~~~~dVlvnylPvGs~~A~~~YA~AAl~--aG~afVN~~P 158 (351)
T TIGR03450 81 VPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAID--AGVAFVNALP 158 (351)
T ss_pred cCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHHhcCCCEEEECCccchHHHHHHHHHHHHH--cCCceEeccC
Confidence 111 34455777789999998887533 345778899 7777777777
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeeccc----cCHHHHHHHHHHHcCCCC
Q 017143 109 LCTTVADCKKVVDAARKRPDILVQVGLEYR----YMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 109 ~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r----~~p~~~~~k~~i~~g~iG 156 (376)
.... ...++.+.+++ .|+++ +|--.. -....+.+-+++.+-.+.
T Consensus 159 ~~ia--~~p~~a~~f~e-~glPi-~GDD~Ksq~GaTi~h~vLa~lf~~Rgl~ 206 (351)
T TIGR03450 159 VFIA--SDPEWAKKFTD-AGVPI-VGDDIKSQVGATITHRVLAKLFEDRGVR 206 (351)
T ss_pred cccc--CCHHHHHHHHH-CCCCE-ecccccccCCCchHHHHHHHHHHHcCCc
Confidence 4222 33457777744 47764 444433 233445556666544443
No 250
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.87 E-value=0.06 Score=46.60 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=29.4
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
+..+|+|||+|.+|...+..|... ++.-+.++|.|.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~---Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS---GVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCE
Confidence 357999999999999999988876 666566888873
No 251
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=95.87 E-value=0.04 Score=51.82 Aligned_cols=101 Identities=24% Similarity=0.215 Sum_probs=67.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHH---HHHHhcC------------------CCCCcc-
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQAL---KLANAFD------------------WPLKVF- 63 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---~~~~~~~------------------~~~~~~- 63 (376)
++||||+|.|.+|+..++.+.....+.++|++|-|.... +... ++...+| -+++++
T Consensus 60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~~~--~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTGGV--KQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCCCH--HHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEE
Confidence 489999999999999998877543368999999886542 1221 2222111 001112
Q ss_pred -CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143 64 -PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL 109 (376)
Q Consensus 64 -~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~ 109 (376)
.+.+++-. +.++|+|+-||......+.+...+++| -|-|++--|.
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aG-AkkV~iSap~ 184 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAG-AKKVLITAPG 184 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCC-CEEEEeCCCC
Confidence 12444333 246999999999999999999999965 3677777663
No 252
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.86 E-value=0.025 Score=52.09 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=46.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.++||||+|.+|+.....++.. +.+|++ +++... . ... ..+.+++++|+. .|+|++++|-.
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f---g~~V~~-~~~~~~-----~----~~~---~~~~~l~ell~~--sDiv~l~~Plt 208 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL---GMKVLY-AEHKGA-----S----VCR---EGYTPFEEVLKQ--ADIVTLHCPLT 208 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC---CCEEEE-ECCCcc-----c----ccc---cccCCHHHHHHh--CCEEEEcCCCC
Confidence 36999999999999988888776 888876 465422 0 111 136789999988 89999999943
No 253
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.86 E-value=0.02 Score=52.61 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=49.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
-.+|||||+|.||+.....+... ++++.+ +|++.... . ++. ...+.++++++.+ .|+|+++.|.
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af---G~~V~~-~~~~~~~~---~------~~~~~~~~~~l~e~l~~--aDvvv~~lPl 200 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW---GFPLRC-WSRSRKSW---P------GVQSFAGREELSAFLSQ--TRVLINLLPN 200 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEE-EeCCCCCC---C------CceeecccccHHHHHhc--CCEEEECCCC
Confidence 36899999999999988888876 888875 67755421 1 111 1134689999987 8999999996
Q ss_pred Ccc
Q 017143 85 MTH 87 (376)
Q Consensus 85 ~~h 87 (376)
...
T Consensus 201 t~~ 203 (312)
T PRK15469 201 TPE 203 (312)
T ss_pred CHH
Confidence 543
No 254
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.80 E-value=0.029 Score=55.59 Aligned_cols=66 Identities=26% Similarity=0.441 Sum_probs=49.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
.+|||||+|.+|+.....++.. +.++++ +|+.... +. +.++++. ..+++++++++ .|+|++++|..
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f---G~~V~~-~d~~~~~-~~----~~~~g~~--~~~~l~ell~~--aDvV~l~lPlt 204 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF---GMKVLA-YDPYISP-ER----AEQLGVE--LVDDLDELLAR--ADFITVHTPLT 204 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEE-ECCCCCh-hH----HHhcCCE--EcCCHHHHHhh--CCEEEEccCCC
Confidence 5899999999999988888776 788775 6775321 11 2345643 45789999987 89999999954
No 255
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.79 E-value=0.06 Score=51.32 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=53.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
-+|+|+|+|.+|...+..++.. +.+++ ++|+++.+++ .+.++|+. .. +.++++.. .|+|+.+|.+..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~---Ga~Vi-V~d~d~~R~~----~A~~~G~~--~~-~~~e~v~~--aDVVI~atG~~~ 269 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ---GARVI-VTEVDPICAL----QAAMEGYE--VM-TMEEAVKE--GDIFVTTTGNKD 269 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEECChhhHH----HHHhcCCE--Ec-cHHHHHcC--CCEEEECCCCHH
Confidence 4899999999999988887775 67755 5899887433 34456754 22 45677754 899999887543
Q ss_pred cHHHH-HHHHc
Q 017143 87 HYQIL-MDIIN 96 (376)
Q Consensus 87 h~~~~-~~al~ 96 (376)
=.... ..+++
T Consensus 270 ~i~~~~l~~mk 280 (413)
T cd00401 270 IITGEHFEQMK 280 (413)
T ss_pred HHHHHHHhcCC
Confidence 23333 55566
No 256
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=95.79 E-value=0.056 Score=49.85 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=64.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC---CC--------------CCccC-
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD---WP--------------LKVFP- 64 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~---~~--------------~~~~~- 64 (376)
|+||||-|.|+||+..++.+....++++++++|-|.... +...-+-+ -+| -+ ++++.
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~--~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~ 78 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDP--RTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSD 78 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCH--HHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEc
Confidence 579999999999999888765532258999999886422 22222221 111 00 11111
Q ss_pred -CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143 65 -GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP 108 (376)
Q Consensus 65 -~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP 108 (376)
+.+++-. +.++|+|+-||......+.+..++++|+ |-|++--|
T Consensus 79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGa-k~V~iSap 123 (337)
T PRK07403 79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGA-KKVLITAP 123 (337)
T ss_pred CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCc-EEEEeCCC
Confidence 1222222 1269999999999999999999999552 56666656
No 257
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=95.77 E-value=0.1 Score=50.90 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=59.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH---HHHhhCCCCCEEEEeC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH---QELLDSGLCDVVVVST 82 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~D~V~i~t 82 (376)
.-|+.|||+|..|......+.+.+..+++++|++|.++. . +.++.++.+. .+++++.++|-|+|+.
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~---------~--g~~VpvlG~~~dL~~~v~~~~IdeViIAi 211 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPKP---------G--GVSNDWAGNLQQLVEDAKAGKIHNVYIAM 211 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCcc---------c--cCCCCcCCCHHHHHHHHHhCCCCEEEEeC
Confidence 357999999999998888887764458999999986542 0 2222245554 4556667899999999
Q ss_pred CCCccHH---HHHHHHcCCCCCeEEEe
Q 017143 83 PNMTHYQ---ILMDIINHPKPHHVLVE 106 (376)
Q Consensus 83 ~~~~h~~---~~~~al~~~~g~~Vl~E 106 (376)
|...+.+ ++..|-+ .|.+|.+=
T Consensus 212 p~~~~~~l~ell~~~~~--~~v~V~iv 236 (463)
T PRK10124 212 SMCDGARVKKLVRQLAD--TTCSVLLI 236 (463)
T ss_pred CCcchHHHHHHHHHHHH--cCCeEEEe
Confidence 8765432 3334555 56666543
No 258
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.75 E-value=0.084 Score=46.20 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=68.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcE--EEEEeCCC----hhhH----HHHHHHHHhcCCCCCccCCHHHHhhCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVS--VVCIADPH----LQSR----QQALKLANAFDWPLKVFPGHQELLDSGLC 75 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~--~~~v~d~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (376)
..|+.|+|+|..|...+..+... ++. -+.++|++ .++. +..++++++++.. ....++.+.+.. +
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~---G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~-~~~~~l~~~l~~--~ 98 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA---GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE-KTGGTLKEALKG--A 98 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc---CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC-cccCCHHHHHhc--C
Confidence 46999999999999888777665 665 66789998 4432 1235566665422 121367677765 8
Q ss_pred CEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeE-EEEe
Q 017143 76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL-VQVG 134 (376)
Q Consensus 76 D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~-~~v~ 134 (376)
|+|+-+||....-+...+.+. . .++++ |+. ++.+ ..+.+.+++. |.. +..|
T Consensus 99 dvlIgaT~~G~~~~~~l~~m~--~-~~ivf--~ls-nP~~-e~~~~~A~~~-ga~i~a~G 150 (226)
T cd05311 99 DVFIGVSRPGVVKKEMIKKMA--K-DPIVF--ALA-NPVP-EIWPEEAKEA-GADIVATG 150 (226)
T ss_pred CEEEeCCCCCCCCHHHHHhhC--C-CCEEE--EeC-CCCC-cCCHHHHHHc-CCcEEEeC
Confidence 999999986554444455554 2 23333 333 2211 2255555343 663 5555
No 259
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.72 E-value=0.028 Score=55.71 Aligned_cols=66 Identities=27% Similarity=0.470 Sum_probs=49.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-.+|||||+|.+|+.....++.. +.++++ +|+.... +. +..+++. .. ++++++++ .|+|++++|..
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f---G~~V~~-~d~~~~~-~~----~~~~g~~--~~-~l~ell~~--aDiV~l~lP~t 205 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF---GMKVIA-YDPYISP-ER----AAQLGVE--LV-SLDELLAR--ADFITLHTPLT 205 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEE-ECCCCCh-hH----HHhcCCE--EE-cHHHHHhh--CCEEEEccCCC
Confidence 35899999999999988888776 788774 6775431 11 2344653 33 89999987 79999999964
No 260
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=95.70 E-value=0.094 Score=48.33 Aligned_cols=100 Identities=21% Similarity=0.208 Sum_probs=66.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC-C--C--------------CCcc--
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD-W--P--------------LKVF-- 63 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~-~--~--------------~~~~-- 63 (376)
++||||-|.|+||+..++.+... +++++++|-|.... +...-+-+ -+| + + +.++
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~--~~~~vvaiNd~~~~--~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~ 77 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDA--DYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAE 77 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHC--CCCEEEEEecCCCH--HHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEc
Confidence 38999999999999988886654 78999999886432 22222221 011 0 0 1111
Q ss_pred CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143 64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC 110 (376)
Q Consensus 64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a 110 (376)
.+.+++-. +.++|+|+-||......+.+.+++++| -|-|.+--|+.
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aG-ak~V~iSap~~ 124 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPSK 124 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCC-CEEEEeCCCCC
Confidence 13444332 236999999999999999999999955 36677776643
No 261
>PRK15076 alpha-galactosidase; Provisional
Probab=95.69 E-value=0.027 Score=54.19 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=67.3
Q ss_pred eeEEEEeCChhhH--HHHHHhhhhcC-CCcEEEEEeCCChhhHHHHHHHHH----hcCCC--CCccCCHHHHhhCCCCCE
Q 017143 7 VKYGIIGMGMMGR--EHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLAN----AFDWP--LKVFPGHQELLDSGLCDV 77 (376)
Q Consensus 7 ~~v~iiG~G~~g~--~~~~~~~~~~~-~~~~~~~v~d~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~l~~~~~D~ 77 (376)
+||+|||+|.+|. .++..+..... ++.+| .++|+++++++.+.++.+ ..+.+ +..++|..+.+++ .|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~ev-vLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d--ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEI-ALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG--ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEE-EEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC--CCE
Confidence 6999999999874 34445542211 34464 489999987765544433 33432 4557788888876 899
Q ss_pred EEEeCCCC-ccHH--HH-HHHHcCCCCCeE-EEec--C-----CCCCHHHHHHHHHHHHhC
Q 017143 78 VVVSTPNM-THYQ--IL-MDIINHPKPHHV-LVEK--P-----LCTTVADCKKVVDAARKR 126 (376)
Q Consensus 78 V~i~t~~~-~h~~--~~-~~al~~~~g~~V-l~EK--P-----~a~~~~e~~~l~~~a~~~ 126 (376)
|+++.... .+.. .= .=.++ .|..- ..|- | .-.|....+++.+..++.
T Consensus 79 Vv~ti~vg~~~~~~~~De~Iplk--~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~ 137 (431)
T PRK15076 79 VINAIQVGGYEPCTVTDFEIPKK--YGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEV 137 (431)
T ss_pred EeEeeeeCCcchhhhhhhhhHHH--cCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHH
Confidence 99988875 3322 11 12466 55330 0132 1 233566666666666443
No 262
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.66 E-value=0.16 Score=46.44 Aligned_cols=115 Identities=12% Similarity=0.197 Sum_probs=67.9
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEE
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVV 79 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~ 79 (376)
|+...+..||+||++-||+..+-++.. .+|.|. ++.|...+.+...+-. ..|.++-...|+++|... ..|..|+
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d---~Gf~v~-~yNRT~skvD~flane-ak~~~i~ga~S~ed~v~klk~PR~ii 75 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIAD---KGFTVC-AYNRTTSKVDEFLANE-AKGTKIIGAYSLEDFVSKLKKPRVII 75 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhcccc---cCceEE-EeccchHhHHHHHHHh-hcCCcccCCCCHHHHHHhcCCCcEEE
Confidence 666567899999999999998766666 489866 5788777443222111 125544456789999875 3477776
Q ss_pred EeCCCCccHHHHHHH----HcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143 80 VSTPNMTHYQILMDI----INHPKPHHVLVEKPLCTTVADCKKVVDAA 123 (376)
Q Consensus 80 i~t~~~~h~~~~~~a----l~~~~g~~Vl~EKP~a~~~~e~~~l~~~a 123 (376)
+..-...-.+..++. |+ .| .|+++--=..-...-++-.+++
T Consensus 76 llvkAG~pVD~~I~~L~p~Le--kg-DiIIDGGNs~y~dT~RR~~el~ 120 (487)
T KOG2653|consen 76 LLVKAGAPVDQFIEELVPYLE--KG-DIIIDGGNSEYQDTERRCRELA 120 (487)
T ss_pred EEeeCCCcHHHHHHHHHhhcC--CC-CEEEeCCcccCcchHHHHHHHH
Confidence 655443333333332 33 22 4555444444444444444444
No 263
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=95.64 E-value=0.083 Score=48.88 Aligned_cols=104 Identities=20% Similarity=0.157 Sum_probs=68.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhc-CCCcEEEEEeCCChhh-HHHHHHHHHhcC-----------------CCCCcc--C
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLR-SQGVSVVCIADPHLQS-RQQALKLANAFD-----------------WPLKVF--P 64 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~-~~~~~~~~~~~~-----------------~~~~~~--~ 64 (376)
++||||+|.|.+|+..++.+.... ++++++++|-|..... ..-..+....+| -++.++ .
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER 80 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence 479999999999999988876531 2689999998765321 111111112111 001122 2
Q ss_pred CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143 65 GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC 110 (376)
Q Consensus 65 ~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a 110 (376)
+.+++-. +.++|+|+-||......+.+..++++| -|-|.+--|..
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aG-Ak~V~iSap~~ 126 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAG-AKKVLFSHPGS 126 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcC-CEEEEecCCcc
Confidence 4444433 246999999999999999999999954 26788887764
No 264
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.64 E-value=0.047 Score=46.85 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=71.8
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t~~ 84 (376)
.-+|.|||.|.+|..-+..|... +.+++ |++++... ...+++.+..+. ..-..++ +.+. +.|+|+.+|.+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~---ga~V~-VIs~~~~~--~l~~l~~~~~i~-~~~~~~~~~~l~--~adlViaaT~d 80 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY---GAHIV-VISPELTE--NLVKLVEEGKIR-WKQKEFEPSDIV--DAFLVIAATND 80 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCeEE-EEcCCCCH--HHHHHHhCCCEE-EEecCCChhhcC--CceEEEEcCCC
Confidence 46999999999998888777775 56766 44554431 344555443332 1111222 2233 48999999988
Q ss_pred Cc-cHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143 85 MT-HYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS 152 (376)
Q Consensus 85 ~~-h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 152 (376)
.. ...+...| + +++.|-+ ..| +.+.=..-+.-+++++.+.+.-+..---..+.+|+.|++
T Consensus 81 ~elN~~i~~~a-~--~~~lvn~~d~~-----~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 81 PRVNEQVKEDL-P--ENALFNVITDA-----ESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEA 142 (202)
T ss_pred HHHHHHHHHHH-H--hCCcEEECCCC-----ccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 64 44444445 6 5555544 222 222222222224556666666554433345566666653
No 265
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.64 E-value=0.096 Score=49.60 Aligned_cols=104 Identities=20% Similarity=0.232 Sum_probs=65.0
Q ss_pred ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
..+|+||| +|.||......+... +.+|+ ++|+++. ++.++++.+ .|+|++|+|.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~---G~~V~-~~d~~~~-------------------~~~~~~~~~--aDlVilavP~ 152 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS---GYQVR-ILEQDDW-------------------DRAEDILAD--AGMVIVSVPI 152 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC---CCeEE-EeCCCcc-------------------hhHHHHHhc--CCEEEEeCcH
Confidence 47899999 999999999888875 66755 5676421 235566655 8999999999
Q ss_pred CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCH
Q 017143 85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP 141 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p 141 (376)
..-.+++.+.... ..-.|+++- .+....-..++.+.. . + . ++|...-+.|
T Consensus 153 ~~~~~~~~~l~~l-~~~~iv~Dv-~SvK~~~~~~~~~~~-~--~-~-fvg~HPm~G~ 202 (374)
T PRK11199 153 HLTEEVIARLPPL-PEDCILVDL-TSVKNAPLQAMLAAH-S--G-P-VLGLHPMFGP 202 (374)
T ss_pred HHHHHHHHHHhCC-CCCcEEEEC-CCccHHHHHHHHHhC-C--C-C-EEeeCCCCCC
Confidence 8766666554331 112455554 333334445554433 1 2 2 5655555555
No 266
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=95.63 E-value=0.0069 Score=45.16 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=49.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
|||.|||.| |+.|.-+++-.+.+.++-+.++--++- ...++..+.++..-++.+.++..+..+|+|+|..-..+
T Consensus 1 MkVLviGsG--gREHAia~~l~~s~~v~~v~~aPGN~G----~~~~~~~~~~~~~d~~~l~~~a~~~~idlvvvGPE~pL 74 (100)
T PF02844_consen 1 MKVLVIGSG--GREHAIAWKLSQSPSVEEVYVAPGNPG----TAELGKNVPIDITDPEELADFAKENKIDLVVVGPEAPL 74 (100)
T ss_dssp EEEEEEESS--HHHHHHHHHHTTCTTEEEEEEEE--TT----GGGTSEEE-S-TT-HHHHHHHHHHTTESEEEESSHHHH
T ss_pred CEEEEECCC--HHHHHHHHHHhcCCCCCEEEEeCCCHH----HHhhceecCCCCCCHHHHHHHHHHcCCCEEEECChHHH
Confidence 799999999 566666554433367766666544443 22222222222122333444444567999999876555
Q ss_pred cHHHHHHHHcCCCCCeEE
Q 017143 87 HYQILMDIINHPKPHHVL 104 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl 104 (376)
-.=++-..-+ +|..||
T Consensus 75 ~~Gl~D~l~~--~gi~vf 90 (100)
T PF02844_consen 75 VAGLADALRA--AGIPVF 90 (100)
T ss_dssp HTTHHHHHHH--TT-CEE
T ss_pred HHHHHHHHHH--CCCcEE
Confidence 5555555556 677665
No 267
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.48 E-value=0.029 Score=45.21 Aligned_cols=74 Identities=24% Similarity=0.380 Sum_probs=45.2
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHH---HhcCCCCCccCCHHHHhhCCCCCEEEEe
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLA---NAFDWPLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
+||+|||+ |.+|...+..+... +-..-+.++|+++++.+ .+.++. ...+.+.....+..+.+++ .|+|+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~--~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~--aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ--GLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKD--ADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT--TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTT--ESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccccc--ccEEEEe
Confidence 59999999 99999888777776 44443668999976331 222222 1122222223333444444 7999998
Q ss_pred CCC
Q 017143 82 TPN 84 (376)
Q Consensus 82 t~~ 84 (376)
...
T Consensus 77 ag~ 79 (141)
T PF00056_consen 77 AGV 79 (141)
T ss_dssp TST
T ss_pred ccc
Confidence 753
No 268
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.48 E-value=0.044 Score=50.55 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=48.4
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHHh--cCCCCCc-cCCHHHHhhCCCCC
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLANA--FDWPLKV-FPGHQELLDSGLCD 76 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~--~~~~~~~-~~~~~~~l~~~~~D 76 (376)
|..+...||+|||+|.+|...+..+... +-+.-+.++|++++.+ ..+.++..- +...+.. .+++++ +++ .|
T Consensus 1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~~--ad 75 (315)
T PRK00066 1 MMKKQHNKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CKD--AD 75 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hCC--CC
Confidence 4344568999999999999877777765 4554466889987743 122222211 1011112 356766 454 89
Q ss_pred EEEEeCCC
Q 017143 77 VVVVSTPN 84 (376)
Q Consensus 77 ~V~i~t~~ 84 (376)
+|+|+.-.
T Consensus 76 ivIitag~ 83 (315)
T PRK00066 76 LVVITAGA 83 (315)
T ss_pred EEEEecCC
Confidence 99997653
No 269
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.47 E-value=0.087 Score=45.36 Aligned_cols=131 Identities=12% Similarity=0.019 Sum_probs=80.9
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~~ 84 (376)
.-+|.|||.|..|..-++.+.+. +..++.++..... ..+.+.++.++. .. +.++.-.. .++++|+++|++
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~---ga~v~Vvs~~~~~---el~~~~~~~~i~--~~~~~~~~~~~-~~~~lviaAt~d 82 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKA---GADVTVVSPEFEP---ELKALIEEGKIK--WIEREFDAEDL-DDAFLVIAATDD 82 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc---CCEEEEEcCCccH---HHHHHHHhcCcc--hhhcccChhhh-cCceEEEEeCCC
Confidence 46899999999999888888775 8888866655523 567777776654 22 23322222 238999999998
Q ss_pred C-ccHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143 85 M-THYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS 152 (376)
Q Consensus 85 ~-~h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 152 (376)
. .-..++..|-+ +++.|-+ ++|--.+ =+.-+.-+++.+.+.+.-...---..+.+|+.|++
T Consensus 83 ~~ln~~i~~~a~~--~~i~vNv~D~p~~~~-----f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~ 145 (210)
T COG1648 83 EELNERIAKAARE--RRILVNVVDDPELCD-----FIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEA 145 (210)
T ss_pred HHHHHHHHHHHHH--hCCceeccCCcccCc-----eecceeeccCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 4 66667777777 6776654 5554322 22333325555554444333333355666776653
No 270
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.46 E-value=0.15 Score=47.88 Aligned_cols=81 Identities=12% Similarity=0.205 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143 44 QSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV 119 (376)
Q Consensus 44 ~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l 119 (376)
+.....++.++++|+++ ..++ +.+. +.+. +|++-|++..-.+.+++.++-+ .||+|++.++++.+++|...-
T Consensus 169 e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~-l~~~-vd~lkI~s~~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~A 244 (360)
T PRK12595 169 EGLKILKQVADEYGLAVISEIVNPADVEV-ALDY-VDVIQIGARNMQNFELLKAAGR--VNKPVLLKRGLSATIEEFIYA 244 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCCHHHHHH-HHHh-CCeEEECcccccCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHH
Confidence 33456677888999982 3333 3444 4444 9999999999999999999999 899999999999999999988
Q ss_pred HHHHHhCCC
Q 017143 120 VDAARKRPD 128 (376)
Q Consensus 120 ~~~a~~~~~ 128 (376)
++...+.++
T Consensus 245 ve~i~~~Gn 253 (360)
T PRK12595 245 AEYIMSQGN 253 (360)
T ss_pred HHHHHHCCC
Confidence 888855433
No 271
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.46 E-value=0.022 Score=53.07 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=79.0
Q ss_pred eEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH-HHhhCCCCCEEEEeCCCC
Q 017143 8 KYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ-ELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~D~V~i~t~~~ 85 (376)
||+||| +|..|...++.|.+..-|.++++.++..... .+.+. ..+.+ ..+.+.+ +.+. ++|+|+.|+|+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~----g~~~~-~~~~~-~~~~~~~~~~~~--~~D~v~~a~g~~ 72 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSA----GRKVT-FKGKE-LEVNEAKIESFE--GIDIALFSAGGS 72 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccC----CCeee-eCCee-EEEEeCChHHhc--CCCEEEECCCHH
Confidence 689999 5999999999887721178888776544221 12221 11222 2233222 2333 499999999999
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCCC--------HHH--HHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCTT--------VAD--CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI 155 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~--------~~e--~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i 155 (376)
...+++.++++ +|.. .++-+.+.- +.| -..|.+ + ...+ +..+-++.-......++-+.+.+.|
T Consensus 73 ~s~~~a~~~~~--~G~~-VID~ss~~R~~~~~p~~vpevN~~~i~~-~-~~~~--iianp~C~~t~~~l~l~pL~~~~~i 145 (339)
T TIGR01296 73 VSKEFAPKAAK--CGAI-VIDNTSAFRMDPDVPLVVPEVNLEDLKE-F-NTKG--IIANPNCSTIQMVVVLKPLHDEAKI 145 (339)
T ss_pred HHHHHHHHHHH--CCCE-EEECCHHHhCCCCCCEEeCCcCHHHHhh-C-ccCC--EEECCCcHHHHHHHHHHHHHHhcCc
Confidence 99999999999 7774 443332111 111 112222 2 1123 4444444446666777788777776
Q ss_pred Cce
Q 017143 156 GQV 158 (376)
Q Consensus 156 G~i 158 (376)
-++
T Consensus 146 ~~i 148 (339)
T TIGR01296 146 KRV 148 (339)
T ss_pred cEE
Confidence 444
No 272
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.46 E-value=0.061 Score=49.50 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=46.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH-HHHHHHHhc--CCCC-CccCCHHHHhhCCCCCEEEEeC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ-QALKLANAF--DWPL-KVFPGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~--~~~~-~~~~~~~~~l~~~~~D~V~i~t 82 (376)
+||+|||+|.+|...+..+... .-..-+.++|+++++.+ .+..+.... .-+. ...+++++ +.+ .|+|+|+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~--g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~~--aDiViita 75 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR--GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CKG--ADVVVITA 75 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hCC--CCEEEEcc
Confidence 4899999999999877777765 33455668999887432 222332111 0011 12356655 444 89999998
Q ss_pred CCC
Q 017143 83 PNM 85 (376)
Q Consensus 83 ~~~ 85 (376)
+..
T Consensus 76 ~~~ 78 (308)
T cd05292 76 GAN 78 (308)
T ss_pred CCC
Confidence 853
No 273
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.45 E-value=0.082 Score=50.95 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=56.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
.-+|.|||+|.+|...+..+++. +.+++ ++|+++........+... ...+.+.++. +.|+|+.+.+..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~---G~~V~-g~D~~~~~~~~~~~~~~~------~~~~~~~~~~--~~dlvV~s~gi~ 70 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQK---GVYVI-GVDKSLEALQSCPYIHER------YLENAEEFPE--QVDLVVRSPGIK 70 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHC---CCEEE-EEeCCccccchhHHHhhh------hcCCcHHHhc--CCCEEEECCCCC
Confidence 45899999999999877777664 66755 578766532211111111 1122333333 379888888777
Q ss_pred ccHHHHHHHHcCCCCCeEEEe
Q 017143 86 THYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~E 106 (376)
...+.+.+|++ +|.+|..+
T Consensus 71 ~~~~~l~~A~~--~g~~vv~~ 89 (418)
T PRK00683 71 KEHPWVQAAIA--SHIPVVTD 89 (418)
T ss_pred CCcHHHHHHHH--CCCcEEEH
Confidence 77889999999 88775544
No 274
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.44 E-value=0.083 Score=50.95 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=47.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
--+++|||+|.+|+..+..++.. +.+|+ ++++++.+ +.+ +...|+. +.+++++++. .|+|++++.
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~---Ga~Vi-V~e~dp~~---a~~-A~~~G~~---~~~leell~~--ADIVI~atG 318 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGF---GARVV-VTEIDPIC---ALQ-AAMEGYQ---VVTLEDVVET--ADIFVTATG 318 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCCchh---HHH-HHhcCce---eccHHHHHhc--CCEEEECCC
Confidence 35899999999999988888775 77754 68888763 212 2224643 3468899876 899999864
No 275
>PRK08223 hypothetical protein; Validated
Probab=95.43 E-value=0.15 Score=46.02 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=30.5
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
+.-||.|||+|..|...+..|+.. ++.-+.++|.|.=
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~a---GVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARL---GIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHh---CCCeEEEEeCCCc
Confidence 356999999999999999998886 6766778887653
No 276
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=95.41 E-value=0.067 Score=52.19 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=59.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~D~V~i~t~ 83 (376)
+-|+.|||+|..|...+..+.+.+..+++++|++|.++... ... -.|+| ++ +++.+.+.+.++|.|+|+.|
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~--~~~---i~g~p--Vlg~~~l~~~i~~~~id~ViIAip 197 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAAS--GRL---LTGLP--VVGADDALRLYARTRYAYVIVAMP 197 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCcccc--ccc---cCCCc--ccChhHHHHHHHhCCCCEEEEecC
Confidence 35799999999999888888765445799999998765421 111 13555 33 45556666677999999998
Q ss_pred CCcc---HHHHHHHHcCCCCC-eEEE
Q 017143 84 NMTH---YQILMDIINHPKPH-HVLV 105 (376)
Q Consensus 84 ~~~h---~~~~~~al~~~~g~-~Vl~ 105 (376)
.... .+++.++-+ .|. +|.+
T Consensus 198 ~~~~~~~~~ll~~l~~--~~v~~V~~ 221 (456)
T TIGR03022 198 GTQAEDMARLVRKLGA--LHFRNVLI 221 (456)
T ss_pred CccHHHHHHHHHHHHh--CCCeEEEE
Confidence 5433 333444544 455 5444
No 277
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.41 E-value=0.048 Score=49.55 Aligned_cols=78 Identities=10% Similarity=0.006 Sum_probs=50.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--C-CccCCHHHH--hh--CCCCCEEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--L-KVFPGHQEL--LD--SGLCDVVV 79 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~--l~--~~~~D~V~ 79 (376)
-++.|+|+|..++..+..+... ++.-+.|++|+++..+++++++++++.. . ..+.++++. +. ..+.|+|+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~---g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivI 201 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIE---GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT 201 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEE
Confidence 4799999999988766666664 6666778999865445778887765321 0 112333221 11 12489999
Q ss_pred EeCCCCcc
Q 017143 80 VSTPNMTH 87 (376)
Q Consensus 80 i~t~~~~h 87 (376)
.+||...+
T Consensus 202 NaTp~Gm~ 209 (288)
T PRK12749 202 NGTKVGMK 209 (288)
T ss_pred ECCCCCCC
Confidence 99997654
No 278
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.40 E-value=0.3 Score=45.63 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=77.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC----CHHH---HhhCCCCC-EE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP----GHQE---LLDSGLCD-VV 78 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~l~~~~~D-~V 78 (376)
-+|.|.|+|.+|...+...+.. +.+.+.++++++++++ +++++|.. .+++ +.++ +.....+| +|
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~---G~~~v~~~~~~~~~~~----~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL---GAKSVTAIDINSEKLA----LAKSLGAM-QTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEECCCHHHHH----HHHHcCCc-eEecCcccCHHHHHHHhcCCCCCeEE
Confidence 4789999999998877666554 7775556677776443 33455643 2221 2233 23333578 77
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEEecCC---CCCHHHHHHHHHHHHhCCCeEEEEeecc---cc-CHHHHHHHHHHH
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPL---CTTVADCKKVVDAARKRPDILVQVGLEY---RY-MPPVAKLIQIVK 151 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~---a~~~~e~~~l~~~a~~~~~~~~~v~~~~---r~-~p~~~~~k~~i~ 151 (376)
+-|+....+...+.++++.+ |+-|++--+. ..+... +.... .+ ++.+.-.+.. .+ ...+..+.++++
T Consensus 234 ~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~---~~~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~ 307 (347)
T PRK10309 234 LETAGVPQTVELAIEIAGPR-AQLALVGTLHHDLHLTSAT---FGKIL-RK-ELTVIGSWMNYSSPWPGQEWETASRLLT 307 (347)
T ss_pred EECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCcccChhh---hhHHh-hc-CcEEEEEeccccCCcchhHHHHHHHHHH
Confidence 77888777888889999853 6666664332 222212 22233 22 3333221111 11 145677888888
Q ss_pred cCCCC
Q 017143 152 SGSIG 156 (376)
Q Consensus 152 ~g~iG 156 (376)
+|.+.
T Consensus 308 ~g~i~ 312 (347)
T PRK10309 308 ERKLS 312 (347)
T ss_pred cCCCC
Confidence 87763
No 279
>PLN02602 lactate dehydrogenase
Probab=95.40 E-value=0.051 Score=50.75 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=44.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHH---hcCC-CCCccCCHHHHhhCCCCCEEEEe
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLAN---AFDW-PLKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~---~~~~-~~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
.||+|||+|.+|...+..+... +-+.-+.++|++++.+ ..+.++.. -++. .+....++++ +++ .|+|+|+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~--~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d--aDiVVit 112 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ--DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG--SDLCIVT 112 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC--CCEEEEC
Confidence 6999999999999877776655 4444566889887633 12222221 1121 1122357776 544 8999998
Q ss_pred CC
Q 017143 82 TP 83 (376)
Q Consensus 82 t~ 83 (376)
.-
T Consensus 113 AG 114 (350)
T PLN02602 113 AG 114 (350)
T ss_pred CC
Confidence 54
No 280
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.40 E-value=0.064 Score=51.53 Aligned_cols=77 Identities=18% Similarity=0.086 Sum_probs=54.6
Q ss_pred eeEEEEeCChh-hHHHHHHhhhhc-C-CCcEEEEEeCCChhhHHHHHHHH----HhcCCC--CCccCCHHHHhhCCCCCE
Q 017143 7 VKYGIIGMGMM-GREHFINLHHLR-S-QGVSVVCIADPHLQSRQQALKLA----NAFDWP--LKVFPGHQELLDSGLCDV 77 (376)
Q Consensus 7 ~~v~iiG~G~~-g~~~~~~~~~~~-~-~~~~~~~v~d~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~l~~~~~D~ 77 (376)
+||+|||.|+. +...+..+.+.. . +.-+ +.++|+|+++++...+++ ++.|.+ +..++|.+++|.+ .|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~e-i~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g--ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISE-VTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID--ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCE-EEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC--CCE
Confidence 68999999984 445666665542 1 3344 558999999886654444 455644 5678999999987 899
Q ss_pred EEEeCCCCc
Q 017143 78 VVVSTPNMT 86 (376)
Q Consensus 78 V~i~t~~~~ 86 (376)
|+......-
T Consensus 78 Vi~~irvGg 86 (425)
T cd05197 78 VINQFRVGG 86 (425)
T ss_pred EEEeeecCC
Confidence 998877653
No 281
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.39 E-value=0.11 Score=45.61 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=30.3
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
+..||.|||+|.+|...+..|... ++.-+.++|.|.-
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~---Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAA---GVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCEE
Confidence 357999999999999999999886 6766778877653
No 282
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.37 E-value=0.048 Score=50.16 Aligned_cols=69 Identities=20% Similarity=0.164 Sum_probs=45.1
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-------CCCC-CccCCHHHHhhCCCCCEEE
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-------DWPL-KVFPGHQELLDSGLCDVVV 79 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~l~~~~~D~V~ 79 (376)
||+|||+|.+|...+..+... .-..-+.++|+++++ ++.++..+ +... ....++++ +. +.|+|+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~--g~~~ei~l~D~~~~~---~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~--~aDIVI 73 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ--GIADELVLIDINEEK---AEGEALDLEDALAFLPSPVKIKAGDYSD-CK--DADIVV 73 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCcch---hhHhHhhHHHHhhccCCCeEEEcCCHHH-hC--CCCEEE
Confidence 799999999999888877765 333235578998874 44333322 2111 12356665 44 489999
Q ss_pred EeCCC
Q 017143 80 VSTPN 84 (376)
Q Consensus 80 i~t~~ 84 (376)
+++..
T Consensus 74 itag~ 78 (306)
T cd05291 74 ITAGA 78 (306)
T ss_pred EccCC
Confidence 99985
No 283
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.36 E-value=0.097 Score=48.30 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=46.0
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----C---C-CCCccCCHHHHhhC
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----D---W-PLKVFPGHQELLDS 72 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~---~-~~~~~~~~~~~l~~ 72 (376)
|+++ ++||+|||+|.+|......|.+. +.+++. +.+++. +...+-.-.. + + ++..+++.++ +
T Consensus 1 ~~~~-~m~I~IiG~GaiG~~lA~~L~~~---g~~V~~-~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~-- 70 (313)
T PRK06249 1 MDSE-TPRIGIIGTGAIGGFYGAMLARA---GFDVHF-LLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED-M-- 70 (313)
T ss_pred CCCc-CcEEEEECCCHHHHHHHHHHHHC---CCeEEE-EEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh-c--
Confidence 5544 47999999999999888888774 667664 455542 1111100000 1 0 0112333332 2
Q ss_pred CCCCEEEEeCCCCccHHH
Q 017143 73 GLCDVVVVSTPNMTHYQI 90 (376)
Q Consensus 73 ~~~D~V~i~t~~~~h~~~ 90 (376)
..+|+|++|++.....+.
T Consensus 71 ~~~D~vilavK~~~~~~~ 88 (313)
T PRK06249 71 PPCDWVLVGLKTTANALL 88 (313)
T ss_pred CCCCEEEEEecCCChHhH
Confidence 348999999997755443
No 284
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.36 E-value=0.096 Score=47.78 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=68.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC-----HHHHhh---CCCCCEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG-----HQELLD---SGLCDVV 78 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~---~~~~D~V 78 (376)
-.++|+|+|.+|...+...+.. +...+...|.++++++ +++++|-. +.+++ +.+.+. +..+|.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~a---gA~~IiAvD~~~~Kl~----~A~~fGAT-~~vn~~~~~~vv~~i~~~T~gG~d~~ 258 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAA---GAGRIIAVDINPEKLE----LAKKFGAT-HFVNPKEVDDVVEAIVELTDGGADYA 258 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHc---CCceEEEEeCCHHHHH----HHHhcCCc-eeecchhhhhHHHHHHHhcCCCCCEE
Confidence 4799999999999888777665 4444445699998654 45556653 44443 333333 2368999
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCT 111 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~ 111 (376)
+.++-+..+...+++++.. -|+-|++=-|-+.
T Consensus 259 ~e~~G~~~~~~~al~~~~~-~G~~v~iGv~~~~ 290 (366)
T COG1062 259 FECVGNVEVMRQALEATHR-GGTSVIIGVAGAG 290 (366)
T ss_pred EEccCCHHHHHHHHHHHhc-CCeEEEEecCCCC
Confidence 9999999999999998875 4888888766544
No 285
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.33 E-value=0.093 Score=51.43 Aligned_cols=86 Identities=24% Similarity=0.273 Sum_probs=55.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC--CHHHHhhCCCCCEEEEeCC-
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--GHQELLDSGLCDVVVVSTP- 83 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~D~V~i~t~- 83 (376)
-||.|+|+|..|...+..+.+. +.+++ ++|++... ..++.++.|+. .+. +..+.+. ++|+|+++..
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~---G~~V~-~~D~~~~~---~~~~l~~~gi~--~~~~~~~~~~~~--~~d~vV~Spgi 84 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL---GCDVV-VADDNETA---RHKLIEVTGVA--DISTAEASDQLD--SFSLVVTSPGW 84 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC---CCEEE-EECCChHH---HHHHHHhcCcE--EEeCCCchhHhc--CCCEEEeCCCC
Confidence 5799999999999766666664 66655 68876542 33444566875 332 2234444 4788766543
Q ss_pred CCccHHHHHHHHcCCCCCeEEEe
Q 017143 84 NMTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~E 106 (376)
+..| +...+|.+ +|++|+-+
T Consensus 85 ~~~~-p~~~~a~~--~gi~v~~~ 104 (473)
T PRK00141 85 RPDS-PLLVDAQS--QGLEVIGD 104 (473)
T ss_pred CCCC-HHHHHHHH--CCCceeeH
Confidence 3455 55667777 78888753
No 286
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.32 E-value=0.44 Score=42.71 Aligned_cols=101 Identities=12% Similarity=0.244 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHH
Q 017143 46 RQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121 (376)
Q Consensus 46 ~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~ 121 (376)
....+++++++|+++ ..++ +.+. +.+. +|++-|++.+-.+.++..++-+ .||+|++.++++.+++|+....+
T Consensus 80 l~~l~~~~~~~Gl~~~te~~d~~~~~~-l~~~-vd~~kIga~~~~n~~LL~~~a~--~gkPV~lk~G~~~s~~e~~~A~e 155 (266)
T PRK13398 80 LKILKEVGDKYNLPVVTEVMDTRDVEE-VADY-ADMLQIGSRNMQNFELLKEVGK--TKKPILLKRGMSATLEEWLYAAE 155 (266)
T ss_pred HHHHHHHHHHcCCCEEEeeCChhhHHH-HHHh-CCEEEECcccccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHHH
Confidence 356677888999982 3332 3444 4444 8999999999999999999988 89999999999999999999998
Q ss_pred HHHhCCCeEEEEeec-----cccCHHHHHHHHHH
Q 017143 122 AARKRPDILVQVGLE-----YRYMPPVAKLIQIV 150 (376)
Q Consensus 122 ~a~~~~~~~~~v~~~-----~r~~p~~~~~k~~i 150 (376)
.....++-.+.+.+. ..|.+....++.+.
T Consensus 156 ~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~ 189 (266)
T PRK13398 156 YIMSEGNENVVLCERGIRTFETYTRNTLDLAAVA 189 (266)
T ss_pred HHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHH
Confidence 886555544444442 24554444444443
No 287
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.32 E-value=0.068 Score=51.27 Aligned_cols=93 Identities=19% Similarity=0.154 Sum_probs=57.7
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC-
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP- 83 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~- 83 (376)
...||+|+|+|..|...+..|.+. +.+++ ++|.++.......+....-+++ ....+... +.-..+|+|++.-.
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~---G~~v~-v~D~~~~~~~~~~~~~~~~~i~-~~~g~~~~-~~~~~~d~vV~SPGi 79 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKL---GAEVT-VSDDRPAPEGLAAQPLLLEGIE-VELGSHDD-EDLAEFDLVVKSPGI 79 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHC---CCeEE-EEcCCCCccchhhhhhhccCce-eecCccch-hccccCCEEEECCCC
Confidence 368999999999999888888875 77766 5776665421112222233554 11222222 22223787776544
Q ss_pred CCccHHHHHHHHcCCCCCeEEEe
Q 017143 84 NMTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~E 106 (376)
+..| +++.+|.+ +|.+|+.|
T Consensus 80 ~~~~-p~v~~A~~--~gi~i~~d 99 (448)
T COG0771 80 PPTH-PLVEAAKA--AGIEIIGD 99 (448)
T ss_pred CCCC-HHHHHHHH--cCCcEEeH
Confidence 4455 48888889 88999865
No 288
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.31 E-value=0.097 Score=49.65 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=28.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH 42 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~ 42 (376)
.-||.|||+|..|...+..|... ++.-+.++|.|
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~---Gvg~i~lvD~d 168 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA---GVGTLGIVDHD 168 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC
Confidence 46899999999999999888886 67666688887
No 289
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=95.29 E-value=0.31 Score=45.97 Aligned_cols=132 Identities=14% Similarity=0.226 Sum_probs=75.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhC-CCCCEEEEeCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELLDS-GLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~~D~V~i~t~ 83 (376)
-+|.|.|+|.+|...+...+.. +.+++++... ++ +..++++++|.+ .++ .+.+++.+. ..+|+|+-++.
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~---Ga~vi~~~~~-~~---~~~~~~~~~Ga~-~vi~~~~~~~~~~~~~~~D~vid~~g 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAF---GLKVTVISSS-SN---KEDEAINRLGAD-SFLVSTDPEKMKAAIGTMDYIIDTVS 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC-cc---hhhhHHHhCCCc-EEEcCCCHHHHHhhcCCCCEEEECCC
Confidence 3789999999999877666654 6777765443 33 233455567764 222 222222111 24899999887
Q ss_pred CCccHHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143 84 NMTHYQILMDIINHPKPHHVLV---EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG 156 (376)
.......+.++++.+ |+-|.+ ++|...+. .... .+ +..+ .+....-...+..+-+++++|+|-
T Consensus 257 ~~~~~~~~~~~l~~~-G~iv~vG~~~~~~~~~~------~~~~-~~-~~~i-~g~~~~~~~~~~~~~~li~~g~i~ 322 (360)
T PLN02586 257 AVHALGPLLGLLKVN-GKLITLGLPEKPLELPI------FPLV-LG-RKLV-GGSDIGGIKETQEMLDFCAKHNIT 322 (360)
T ss_pred CHHHHHHHHHHhcCC-cEEEEeCCCCCCCccCH------HHHH-hC-CeEE-EEcCcCCHHHHHHHHHHHHhCCCC
Confidence 655566788888753 665655 33433332 2223 22 3222 232211123567777888888775
No 290
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=95.28 E-value=0.16 Score=44.56 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHhcCCCC--Ccc--CCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143 43 LQSRQQALKLANAFDWPL--KVF--PGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK 118 (376)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~--~~~--~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~ 118 (376)
++-++..++..+++|+|+ .+. .+.+.+.+. +|++=|.+.+...+++++++-+ .||+|++=|+++.+++|..-
T Consensus 59 eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~--vDilQIgArn~rn~~LL~a~g~--t~kpV~lKrG~~~t~~e~l~ 134 (258)
T TIGR01362 59 EEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV--VDIIQIPAFLCRQTDLLVAAAK--TGRIVNVKKGQFLSPWDMKN 134 (258)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh--CcEEEeCchhcchHHHHHHHhc--cCCeEEecCCCcCCHHHHHH
Confidence 345567788888999982 222 234444444 9999999999999999999999 89999999999999999877
Q ss_pred HHHHHHhCCCeEEEE
Q 017143 119 VVDAARKRPDILVQV 133 (376)
Q Consensus 119 l~~~a~~~~~~~~~v 133 (376)
.++.....++-.++.
T Consensus 135 aaeyi~~~Gn~~viL 149 (258)
T TIGR01362 135 VVEKVLSTGNKNILL 149 (258)
T ss_pred HHHHHHHcCCCcEEE
Confidence 777765554444444
No 291
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.28 E-value=0.13 Score=48.95 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=51.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
--+|+|+|+|.+|+..+..++.. +.+++ |+|+++.+ +. .+...|+. . .+.++++.. .|+|+.+|.+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~---Ga~Vi-V~d~dp~r---~~-~A~~~G~~--v-~~leeal~~--aDVVItaTG~~ 261 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM---GARVI-VTEVDPIR---AL-EAAMDGFR--V-MTMEEAAKI--GDIFITATGNK 261 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC---cCEEE-EEeCChhh---HH-HHHhcCCE--e-CCHHHHHhc--CCEEEECCCCH
Confidence 35899999999999998888876 77855 68888863 22 22334643 3 356777765 79998887643
Q ss_pred ccHH-HHHHHHc
Q 017143 86 THYQ-ILMDIIN 96 (376)
Q Consensus 86 ~h~~-~~~~al~ 96 (376)
.=.. .....++
T Consensus 262 ~vI~~~~~~~mK 273 (406)
T TIGR00936 262 DVIRGEHFENMK 273 (406)
T ss_pred HHHHHHHHhcCC
Confidence 2222 2344556
No 292
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.25 E-value=0.056 Score=49.91 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=45.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
.++||||+|.+|+...+.++.. +.++++ +++.... ... .+.+++++|+. .|+|++++|-.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f---gm~V~~-~~~~~~~----------~~~---~~~~l~ell~~--sDiv~l~lPlt 208 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF---GMRVLI-GQLPGRP----------ARP---DRLPLDELLPQ--VDALTLHCPLT 208 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC---CCEEEE-ECCCCCc----------ccc---cccCHHHHHHh--CCEEEECCCCC
Confidence 5899999999999988888776 888876 5654320 011 24589999988 79999999953
No 293
>PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=95.24 E-value=0.26 Score=47.87 Aligned_cols=122 Identities=15% Similarity=0.212 Sum_probs=70.4
Q ss_pred CCCceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HH-----------------HHHHHHh
Q 017143 3 ANDTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQ-----------------ALKLANA 55 (376)
Q Consensus 3 ~~~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~-----------------~~~~~~~ 55 (376)
+..+..+.|.|+ |-.++ ..+|+|.++- ++++.|+|+.-.+-... +. .++|.+.
T Consensus 5 ~~~~~~~vIfGAtGDLA~RkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~F~~~ 84 (482)
T PRK12853 5 PAPPCTLVIFGATGDLARRKLLPALYRLARAGLLPEDLRIIGVGRDDWSDEQWRARVRESLRAFGADGFDDAVWDRLAAR 84 (482)
T ss_pred CCCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCEEEEEeCCcCCHHHHHHHHHHHHHhhccCccCHHHHHHHHhc
Confidence 334677888885 66665 5777776652 35799999764332211 00 1122221
Q ss_pred cCCCCCccC---CHHHH---hhCCCCCEEEEeCCCCccHHHHHHHHcCC---CCCeEEEecCCCCCHHHHHHHHHHHH
Q 017143 56 FDWPLKVFP---GHQEL---LDSGLCDVVVVSTPNMTHYQILMDIINHP---KPHHVLVEKPLCTTVADCKKVVDAAR 124 (376)
Q Consensus 56 ~~~~~~~~~---~~~~~---l~~~~~D~V~i~t~~~~h~~~~~~al~~~---~g~~Vl~EKP~a~~~~e~~~l~~~a~ 124 (376)
...-..-|+ +|++| +..+.--+.++++||..=..++...-+.+ ...-|.+|||++.+++.|++|-+...
T Consensus 85 ~~Y~~~d~~~~~~~~~L~~~l~~~~~~lfYLA~PP~~f~~i~~~L~~~~l~~~~~RiviEKPFG~Dl~SA~~Ln~~l~ 162 (482)
T PRK12853 85 LSYVQGDVTDPADYARLAEALGPGGNPVFYLAVPPSLFAPVVENLGAAGLLPEGRRVVLEKPFGHDLASARALNATLA 162 (482)
T ss_pred CEEEecCCCCHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 100000122 23333 43222348899999887655554433311 13479999999999999999987773
No 294
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.22 E-value=0.089 Score=48.30 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=45.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH--HH---hcCCC--CCccCCHHHHhhCCCCCEEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL--AN---AFDWP--LKVFPGHQELLDSGLCDVVV 79 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--~~---~~~~~--~~~~~~~~~~l~~~~~D~V~ 79 (376)
+||+|||+|.+|...+..++.. ...+ +.++|+.++. .+++.+ .. ..... ++.++++++ +++ .|+|+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~--g~~~-VvlvDi~~~l-~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~--aDiVI 74 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK--ELAD-LVLLDVVEGI-PQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN--SDIVV 74 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCe-EEEEeCCCCh-hHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC--CCEEE
Confidence 5899999999999888777765 2236 5578886653 222221 11 11111 234578887 444 89999
Q ss_pred EeCCC
Q 017143 80 VSTPN 84 (376)
Q Consensus 80 i~t~~ 84 (376)
|+.+.
T Consensus 75 itag~ 79 (305)
T TIGR01763 75 ITAGL 79 (305)
T ss_pred EcCCC
Confidence 99884
No 295
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=95.16 E-value=0.065 Score=49.31 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=53.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhh--------HHHHHHHHHhcCCCCCccCC-----HHHHhhCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQS--------RQQALKLANAFDWPLKVFPG-----HQELLDSG 73 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~ 73 (376)
|||.++|++.++...+..|.+. ++++++|+...+.+ ....+++|++.|+|+....+ +.+.+.+.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~---~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~~ 77 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES---GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAELAAL 77 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHHHHhc
Confidence 5899999999999888888764 78999998643321 12357888999998322222 23456666
Q ss_pred CCCEEEEeCCCC
Q 017143 74 LCDVVVVSTPNM 85 (376)
Q Consensus 74 ~~D~V~i~t~~~ 85 (376)
++|+++++.-..
T Consensus 78 ~~Dliv~~~~~~ 89 (309)
T PRK00005 78 NADVIVVVAYGQ 89 (309)
T ss_pred CcCEEEEehhhc
Confidence 799998877543
No 296
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.14 E-value=0.2 Score=44.16 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143 43 LQSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK 118 (376)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~ 118 (376)
++-++..++..+++|+|+ .+.+ +.+.+.+. +|++=|.+.+...+++++++-+ .||+|++=|+++.+++|..-
T Consensus 67 eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~--~DilQIgArn~rn~~LL~a~g~--t~kpV~lKrG~~~t~~e~~~ 142 (264)
T PRK05198 67 EEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV--VDVLQIPAFLCRQTDLLVAAAK--TGKVVNIKKGQFLAPWDMKN 142 (264)
T ss_pred HHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh--CcEEEECchhcchHHHHHHHhc--cCCeEEecCCCcCCHHHHHH
Confidence 345567778888999982 2222 34444444 9999999999999999999999 89999999999999999888
Q ss_pred HHHHHHhCCCeEEEE
Q 017143 119 VVDAARKRPDILVQV 133 (376)
Q Consensus 119 l~~~a~~~~~~~~~v 133 (376)
..+.....++-.++.
T Consensus 143 aaeyi~~~Gn~~vil 157 (264)
T PRK05198 143 VVDKVREAGNDKIIL 157 (264)
T ss_pred HHHHHHHcCCCeEEE
Confidence 888876555444443
No 297
>COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.14 E-value=0.32 Score=46.49 Aligned_cols=120 Identities=17% Similarity=0.255 Sum_probs=74.9
Q ss_pred CceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH--------------------HHHHHHHHhcC
Q 017143 5 DTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR--------------------QQALKLANAFD 57 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~--------------------~~~~~~~~~~~ 57 (376)
.+..+.|.|+ |-.++ ..+|+|-++. .+++.|+|+.-..-+.. +..++|++++-
T Consensus 6 ~~~~lvIFGatGDLA~RKL~PALy~L~~~g~l~~~~~IiG~aR~~~s~e~f~~~~~~~i~~~~~~~~~~~~~~~F~~~~~ 85 (483)
T COG0364 6 EPFDLVIFGATGDLARRKLFPALYRLYKEGLLPEDFRIIGVARSKWSNEEFRALVREAIEFAKTEEIDEAVWEEFASRLS 85 (483)
T ss_pred CcceEEEEcccchhhhhhHHHHHHHHHHcCCCCCCceEEEEecCcCChHHHHHHHHHHhhhcccccccHHHHHHHHhceE
Confidence 4578888985 77775 5788876652 36888998763321111 01233443321
Q ss_pred -----CC-CCccCCHHHHhhCCC-CCEEEEeCCCCccHHHHHHHHcCC---CCCeEEEecCCCCCHHHHHHHHHHHH
Q 017143 58 -----WP-LKVFPGHQELLDSGL-CDVVVVSTPNMTHYQILMDIINHP---KPHHVLVEKPLCTTVADCKKVVDAAR 124 (376)
Q Consensus 58 -----~~-~~~~~~~~~~l~~~~-~D~V~i~t~~~~h~~~~~~al~~~---~g~~Vl~EKP~a~~~~e~~~l~~~a~ 124 (376)
+. ...|..+.+++...+ .-+.++++||+.-..++...-++| .+.-|.+|||+..+++.|++|-+...
T Consensus 86 Y~~~d~~~~~~~~~L~~~l~~~~~~~vfYLa~pP~~f~~i~~~L~~~~l~~~~~RlviEKPfG~dL~SA~~Ln~~i~ 162 (483)
T COG0364 86 YVSGDYDDPESFDELKDLLGELEGNRVFYLAVPPSLFGTIAENLAKAGLNEGNGRLVIEKPFGHDLASARELNDQIS 162 (483)
T ss_pred EEecCCCCHHHHHHHHHHHhcccCceEEEEecChHHHHHHHHHHHHccCCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 122334455555422 448999999998777766553322 12269999999999999999999773
No 298
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.13 E-value=0.12 Score=48.28 Aligned_cols=36 Identities=31% Similarity=0.347 Sum_probs=29.5
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
+.-||.|||+|.+|...+..|... ++.-+.++|.|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a---Gvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA---GVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCc
Confidence 357899999999999988888875 775566888874
No 299
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.11 E-value=0.097 Score=47.69 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=47.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----C-CCCCc--cCC---HHHHhhCCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----D-WPLKV--FPG---HQELLDSGLCD 76 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~-~~~~~--~~~---~~~~l~~~~~D 76 (376)
-++.|+|+|.+|+..+..+... +++-+.|++|+.+..++++++++++ + ..+.. .++ ++++++ ..|
T Consensus 127 k~vlI~GAGGagrAia~~La~~---G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~--~~D 201 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD---GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIA--SSD 201 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhc--cCC
Confidence 4789999999999877777765 6665667889863222455554433 1 11011 122 223333 379
Q ss_pred EEEEeCCCCcc
Q 017143 77 VVVVSTPNMTH 87 (376)
Q Consensus 77 ~V~i~t~~~~h 87 (376)
+|+.+||...+
T Consensus 202 ilINaTp~Gm~ 212 (289)
T PRK12548 202 ILVNATLVGMK 212 (289)
T ss_pred EEEEeCCCCCC
Confidence 99999997665
No 300
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.10 E-value=0.24 Score=45.96 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143 45 SRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120 (376)
Q Consensus 45 ~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~ 120 (376)
.++..++.++++|+++ ..++ +.+. +.+. +|++-|.+.+-.+++++.++-+ .||+|++.++++.+.+|...-+
T Consensus 153 gl~~L~~~~~e~Gl~~~tev~d~~~v~~-~~~~-~d~lqIga~~~~n~~LL~~va~--t~kPVllk~G~~~t~ee~~~A~ 228 (352)
T PRK13396 153 ALELLAAAREATGLGIITEVMDAADLEK-IAEV-ADVIQVGARNMQNFSLLKKVGA--QDKPVLLKRGMAATIDEWLMAA 228 (352)
T ss_pred HHHHHHHHHHHcCCcEEEeeCCHHHHHH-HHhh-CCeEEECcccccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHH
Confidence 3455667778899982 3333 3444 4444 8999999999999999999999 8999999999999999998888
Q ss_pred HHHHhCCC
Q 017143 121 DAARKRPD 128 (376)
Q Consensus 121 ~~a~~~~~ 128 (376)
+.....++
T Consensus 229 e~i~~~Gn 236 (352)
T PRK13396 229 EYILAAGN 236 (352)
T ss_pred HHHHHcCC
Confidence 88855544
No 301
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.06 E-value=0.16 Score=47.92 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=29.1
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
+.-||.|||+|..|...+..|... ++.-+.++|.|.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~---Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASA---GVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEeCCE
Confidence 356999999999999999988886 665566788763
No 302
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=95.06 E-value=0.4 Score=37.70 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=69.8
Q ss_pred eeEEEEeCChh---hHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 7 VKYGIIGMGMM---GREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~G~~---g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
-+||+||+..- -...+..+... .|++++=| .+.-. .++ -+|.+ +|.|+.++-+. +|+|.|.-+
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~--~GY~ViPV-NP~~~----~~e---iLG~k--~y~sL~dIpe~--IDiVdvFR~ 82 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQ--KGYRVIPV-NPKLA----GEE---ILGEK--VYPSLADIPEP--IDIVDVFRR 82 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHHH--CCCEEEee-Ccccc----hHH---hcCch--hhhcHHhCCCC--CcEEEEecC
Confidence 57999998652 12233333333 58897754 33111 122 34654 99999999854 999999999
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA 123 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a 123 (376)
+..-.+++.+|++ .|-.|++=-+...+.+ +.+..+.+
T Consensus 83 ~e~~~~i~~eal~--~~~kv~W~QlGi~n~e-a~~~~~~a 119 (140)
T COG1832 83 SEAAPEVAREALE--KGAKVVWLQLGIRNEE-AAEKARDA 119 (140)
T ss_pred hhhhHHHHHHHHh--hCCCeEEEecCcCCHH-HHHHHHHh
Confidence 9999999999999 7788888888777766 55555554
No 303
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.01 E-value=0.12 Score=50.15 Aligned_cols=92 Identities=22% Similarity=0.179 Sum_probs=57.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-HHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-ALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-++.|+|.|.+|...+..|++. +.+|+ ++|.+...... .+++ +..|+.+....+..+++.. .+|+|+++..-.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~---G~~V~-~~d~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~-~~d~vV~s~gi~ 79 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL---GANVT-VNDGKPFSENPEAQEL-LEEGIKVICGSHPLELLDE-DFDLMVKNPGIP 79 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC---CCEEE-EEcCCCccchhHHHHH-HhcCCEEEeCCCCHHHhcC-cCCEEEECCCCC
Confidence 4799999999998877777764 78866 46766532212 2333 3446541111233444432 389776655434
Q ss_pred ccHHHHHHHHcCCCCCeEEEe
Q 017143 86 THYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~E 106 (376)
...+...+|.+ +|++|+.|
T Consensus 80 ~~~~~~~~a~~--~~i~v~~~ 98 (447)
T PRK02472 80 YTNPMVEKALE--KGIPIITE 98 (447)
T ss_pred CCCHHHHHHHH--CCCcEEeH
Confidence 44477888888 88998864
No 304
>PRK08328 hypothetical protein; Provisional
Probab=95.00 E-value=0.18 Score=44.25 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=30.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
.-||.|||+|..|...+..|... ++.-+.++|.|.-
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~---Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA---GVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCcc
Confidence 46899999999999999888886 6666778888765
No 305
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.99 E-value=0.1 Score=48.22 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=45.6
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH----H-HhcCCC--CCccCCHHHHhhCCCCCE
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL----A-NAFDWP--LKVFPGHQELLDSGLCDV 77 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~----~-~~~~~~--~~~~~~~~~~l~~~~~D~ 77 (376)
+..||+|||+|.+|......+... .-.+ +.++|++++..+ +..+ + ...+.. +..+++++ .+.+ .|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~--~~~~-l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~--ADi 76 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK--NLGD-VVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNYE-DIKD--SDV 76 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC--CCCe-EEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCHH-HhCC--CCE
Confidence 467999999999999866655554 2246 678999886432 2222 1 112222 23357888 4454 899
Q ss_pred EEEeC
Q 017143 78 VVVST 82 (376)
Q Consensus 78 V~i~t 82 (376)
|+++.
T Consensus 77 VVita 81 (319)
T PTZ00117 77 VVITA 81 (319)
T ss_pred EEECC
Confidence 99998
No 306
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=94.96 E-value=0.63 Score=42.95 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=56.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
=++.|.|+|.+|...+..++. .+++++++.+. +++ . ++++++|.+ ..++ .++. ....+|.++.+++...
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~---~g~~v~~~~~~-~~~---~-~~~~~~g~~-~~~~-~~~~-~~~~vD~vi~~~~~~~ 237 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARY---QGAEVFAFTRS-GEH---Q-ELARELGAD-WAGD-SDDL-PPEPLDAAIIFAPVGA 237 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHH---CCCeEEEEcCC-hHH---H-HHHHHhCCc-EEec-cCcc-CCCcccEEEEcCCcHH
Confidence 378889999999876665444 47888766544 342 2 333566754 2222 2222 2235899999888777
Q ss_pred cHHHHHHHHcCCCCCeEEEe
Q 017143 87 HYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~E 106 (376)
+.+.+.++++.+ |+-|++.
T Consensus 238 ~~~~~~~~l~~~-G~~v~~g 256 (329)
T cd08298 238 LVPAALRAVKKG-GRVVLAG 256 (329)
T ss_pred HHHHHHHHhhcC-CEEEEEc
Confidence 889899999753 6666654
No 307
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.94 E-value=0.12 Score=50.89 Aligned_cols=90 Identities=19% Similarity=0.132 Sum_probs=57.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-hhHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-QSRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~ 83 (376)
.-+|.|||.|.+|...+..|++. +.+++ ++|.++ +......+..++.|+. .+ .+..+.. .++|+|++++-
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~---G~~V~-~~d~~~~~~~~~~~~~l~~~gv~--~~~~~~~~~~--~~~D~Vv~s~G 87 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLEL---GARVT-VVDDGDDERHRALAAILEALGAT--VRLGPGPTLP--EDTDLVVTSPG 87 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCCchhhhHHHHHHHHHcCCE--EEECCCcccc--CCCCEEEECCC
Confidence 35899999999999877777664 77866 466443 2222222333456765 32 2211222 34899999887
Q ss_pred CCccHHHHHHHHcCCCCCeEEE
Q 017143 84 NMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
-....+.+..|.+ +|.+|+-
T Consensus 88 i~~~~~~~~~a~~--~gi~v~~ 107 (480)
T PRK01438 88 WRPDAPLLAAAAD--AGIPVWG 107 (480)
T ss_pred cCCCCHHHHHHHH--CCCeecc
Confidence 6555577788888 7888853
No 308
>PLN02285 methionyl-tRNA formyltransferase
Probab=94.93 E-value=0.069 Score=49.60 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=54.4
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhh---cCCCcEEEEEeCCChhhHH--------HHHHHHHhcCCCCC-cc--C-----
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHL---RSQGVSVVCIADPHLQSRQ--------QALKLANAFDWPLK-VF--P----- 64 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~---~~~~~~~~~v~d~~~~~~~--------~~~~~~~~~~~~~~-~~--~----- 64 (376)
.+++||.++|++.++...+.+|... .+.++++++|+...+.... ..+++|.+.|+|.. ++ .
T Consensus 4 ~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~~ 83 (334)
T PLN02285 4 GRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGEE 83 (334)
T ss_pred CCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCCH
Confidence 4689999999999998887777553 1136899998866544211 25678889999821 11 1
Q ss_pred CHHHHhhCCCCCEEEEeCCC
Q 017143 65 GHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 65 ~~~~~l~~~~~D~V~i~t~~ 84 (376)
...+.+.+..+|+++++.-.
T Consensus 84 ~~~~~l~~~~~Dliv~~~~~ 103 (334)
T PLN02285 84 DFLSALRELQPDLCITAAYG 103 (334)
T ss_pred HHHHHHHhhCCCEEEhhHhh
Confidence 12334555679998888643
No 309
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.93 E-value=0.65 Score=43.35 Aligned_cols=126 Identities=11% Similarity=0.098 Sum_probs=70.3
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC--
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN-- 84 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~-- 84 (376)
=+|.|+|+|.+|...+..+++.. ...+++ ++++++++++.++ +.+.. + ..+++.++..+|+|+-++..
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~-g~~~vi-~~~~~~~k~~~a~----~~~~~---~-~~~~~~~~~g~d~viD~~G~~~ 234 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIY-PESKLV-VFGKHQEKLDLFS----FADET---Y-LIDDIPEDLAVDHAFECVGGRG 234 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhc-CCCcEE-EEeCcHhHHHHHh----hcCce---e-ehhhhhhccCCcEEEECCCCCc
Confidence 37999999999998777666531 344555 4677777554433 33322 1 12233333358999999984
Q ss_pred -CccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc-CHHHHHHHHHHHcC
Q 017143 85 -MTHYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRY-MPPVAKLIQIVKSG 153 (376)
Q Consensus 85 -~~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~-~p~~~~~k~~i~~g 153 (376)
......+.++++.+ |+-|++- .|...+. .... .+ ++.+.-.. ++ ...+..+.+++.+|
T Consensus 235 ~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~------~~~~-~k-~~~i~g~~--~~~~~~~~~~~~~~~~~ 297 (341)
T cd08237 235 SQSAINQIIDYIRPQ-GTIGLMGVSEYPVPINT------RMVL-EK-GLTLVGSS--RSTREDFERAVELLSRN 297 (341)
T ss_pred cHHHHHHHHHhCcCC-cEEEEEeecCCCcccCH------HHHh-hC-ceEEEEec--ccCHHHHHHHHHHHHhC
Confidence 33456677777743 6656553 2332222 1222 22 33333222 22 23567777888877
No 310
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.92 E-value=0.39 Score=45.37 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=76.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC----CHHHHhh---CCCCCEEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP----GHQELLD---SGLCDVVV 79 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~---~~~~D~V~ 79 (376)
=+|.|+|+|.+|...+...+.. +.+.+.+++.++++++ +++++|.. .+++ ++.+.+. ...+|+|+
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~---G~~~Vi~~~~~~~r~~----~a~~~Ga~-~~i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAA---GASQVVAVDLNEDKLA----LARELGAT-ATVNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCcEEEEcCCHHHHH----HHHHcCCc-eEeCCCchhHHHHHHHHhCCCCCEEE
Confidence 3799999999998766655543 6743334577776433 44566754 2222 2222222 12589999
Q ss_pred EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHHHHcCCCC
Q 017143 80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~i~~g~iG 156 (376)
-++........+.++++. .|+-|++--+........ .+.... .+ ++.+.-.+...+ ...+..+.+++.+|++-
T Consensus 265 d~~G~~~~~~~~~~~l~~-~G~iv~~G~~~~~~~~~~-~~~~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~ 339 (371)
T cd08281 265 EMAGSVPALETAYEITRR-GGTTVTAGLPDPEARLSV-PALSLV-AE-ERTLKGSYMGSCVPRRDIPRYLALYLSGRLP 339 (371)
T ss_pred ECCCChHHHHHHHHHHhc-CCEEEEEccCCCCceeee-cHHHHh-hc-CCEEEEEecCCCChHHHHHHHHHHHHcCCCC
Confidence 999877778888888874 366565532211100011 122333 22 334433322221 24566777888888774
No 311
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=94.91 E-value=0.4 Score=46.55 Aligned_cols=102 Identities=10% Similarity=0.142 Sum_probs=70.9
Q ss_pred hhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcC--CCCCccCCHHHHhhC-CCCCEEEEeCCCCccHHHHHH
Q 017143 17 MGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFD--WPLKVFPGHQELLDS-GLCDVVVVSTPNMTHYQILMD 93 (376)
Q Consensus 17 ~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~ 93 (376)
||......|.+. +++|+ |+|++++ +++++.+..+ -.+..+.|++++.+. ..+|+|+++.|.....+-+..
T Consensus 1 MG~~mA~nL~~~---G~~V~-v~nrt~~---~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~ 73 (459)
T PRK09287 1 MGKNLALNIASH---GYTVA-VYNRTPE---KTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE 73 (459)
T ss_pred CcHHHHHHHHhC---CCeEE-EECCCHH---HHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH
Confidence 456667777764 88865 8999998 5666665422 013478899999985 348999999999887666643
Q ss_pred ----HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeE
Q 017143 94 ----IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL 130 (376)
Q Consensus 94 ----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~ 130 (376)
.|+ .| .|+++-- ..+..+..++.+.++++ |+.
T Consensus 74 ~l~~~l~--~G-diiID~g-n~~~~~t~~~~~~l~~~-Gi~ 109 (459)
T PRK09287 74 QLLPLLE--KG-DIIIDGG-NSNYKDTIRREKELAEK-GIH 109 (459)
T ss_pred HHHhcCC--CC-CEEEECC-CCCHHHHHHHHHHHHhc-CCe
Confidence 234 34 5788763 45888888888888444 544
No 312
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.87 E-value=0.27 Score=39.53 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=26.9
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
||.|||+|.+|...+..|... ++.-+.++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~---Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS---GVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEEcCCC
Confidence 689999999999999998886 665556777763
No 313
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=94.86 E-value=0.11 Score=48.03 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=66.5
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhc--CCCcEEEEEeCCC--hhhHHHHHHHHHhcCC----------------------
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLR--SQGVSVVCIADPH--LQSRQQALKLANAFDW---------------------- 58 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~--~~~~~~~~v~d~~--~~~~~~~~~~~~~~~~---------------------- 58 (376)
+++||||-|.|+||+..++++.... .++++++||-|+. ++...-..+.=.-+|-
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i 81 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV 81 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence 4589999999999999888765421 2589999999853 3311100000000110
Q ss_pred ---CCCcc---CCHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCC
Q 017143 59 ---PLKVF---PGHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLC 110 (376)
Q Consensus 59 ---~~~~~---~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a 110 (376)
++..+ .+.+++-.. ..+|+|+=||--....+-+..-|++| -|-|++--|..
T Consensus 82 ng~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~G-AKkViiSAP~~ 139 (361)
T PTZ00434 82 NGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGG-AKKVVISAPAS 139 (361)
T ss_pred CCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcC-CCEEEECCCCC
Confidence 01122 233443332 36999999999888888888888865 38899988854
No 314
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.86 E-value=0.16 Score=49.68 Aligned_cols=90 Identities=20% Similarity=0.146 Sum_probs=58.2
Q ss_pred CceeEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeC
Q 017143 5 DTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t 82 (376)
+..+|.|||+|..|.. .+..|.+. +.+|+ ++|..... ...++ ++.|+. .+ ....+.+. ++|+|+++.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~---G~~V~-~~D~~~~~--~~~~l-~~~gi~--~~~~~~~~~~~--~~d~vv~sp 74 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNL---GYKVS-GSDLKESA--VTQRL-LELGAI--IFIGHDAENIK--DADVVVYSS 74 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhC---CCeEE-EECCCCCh--HHHHH-HHCCCE--EeCCCCHHHCC--CCCEEEECC
Confidence 3468999999999988 46566664 88876 57876542 23344 345765 32 22234454 489877665
Q ss_pred CCCccHHHHHHHHcCCCCCeEEEec
Q 017143 83 PNMTHYQILMDIINHPKPHHVLVEK 107 (376)
Q Consensus 83 ~~~~h~~~~~~al~~~~g~~Vl~EK 107 (376)
.-....+...+|.+ +|++|+-|.
T Consensus 75 gi~~~~~~~~~a~~--~~i~i~~~~ 97 (461)
T PRK00421 75 AIPDDNPELVAARE--LGIPVVRRA 97 (461)
T ss_pred CCCCCCHHHHHHHH--CCCcEEeHH
Confidence 54555567788888 888887653
No 315
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=94.85 E-value=0.19 Score=47.92 Aligned_cols=101 Identities=22% Similarity=0.222 Sum_probs=63.9
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH------hcCCCCC---------------cc
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN------AFDWPLK---------------VF 63 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~------~~~~~~~---------------~~ 63 (376)
+++||||-|.|+||+..++.+....+++++|++|=|.... +...-+-+ +|+-++. ++
T Consensus 74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~--~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGV--KNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCH--HHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence 3599999999999998888765432268999999885432 22222222 1111110 11
Q ss_pred C--CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143 64 P--GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP 108 (376)
Q Consensus 64 ~--~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP 108 (376)
+ +.+++-. +.++|+|+-||......+.+..++++|+ |-|++--|
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGA-kkV~iSAP 198 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA-KKVIITAP 198 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCC-EEEEECCC
Confidence 1 1112221 2469999999999999999999999553 55666555
No 316
>PLN02539 glucose-6-phosphate 1-dehydrogenase
Probab=94.83 E-value=0.34 Score=47.15 Aligned_cols=121 Identities=12% Similarity=0.190 Sum_probs=70.8
Q ss_pred CCceeEEEEeC-ChhhH-HHHHHhhhh------cCCCcEEEEEeCCChhhH---HHH---------------HHHHHhc-
Q 017143 4 NDTVKYGIIGM-GMMGR-EHFINLHHL------RSQGVSVVCIADPHLQSR---QQA---------------LKLANAF- 56 (376)
Q Consensus 4 ~~~~~v~iiG~-G~~g~-~~~~~~~~~------~~~~~~~~~v~d~~~~~~---~~~---------------~~~~~~~- 56 (376)
.++..+.|.|+ |-.++ ..+|+|.++ +.+++.|+|+.-.+-... +.. .++.+..
T Consensus 15 ~~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lpp~~~~IiG~aR~~~s~e~fr~~v~~~l~~~~~~~~~~~~~F~~~~~ 94 (491)
T PLN02539 15 TGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLPPDEVHIFGYARSKITDEELRDRIRGYLKDEKNAPAEAVSKFLQLIK 94 (491)
T ss_pred CCCeEEEEeCCccHHHHhhHHHHHHHHHHcCCCCCCCcEEEEEECCCCCHHHHHHHHHHHHHhhccccHHHHHHHHhhCe
Confidence 34678899995 66665 578887766 235889999774322211 111 1111110
Q ss_pred ----CCC-CCccCCHHHHhhCC----------CCCEEEEeCCCCccHHHHHHHHcCC---CC--CeEEEecCCCCCHHHH
Q 017143 57 ----DWP-LKVFPGHQELLDSG----------LCDVVVVSTPNMTHYQILMDIINHP---KP--HHVLVEKPLCTTVADC 116 (376)
Q Consensus 57 ----~~~-~~~~~~~~~~l~~~----------~~D~V~i~t~~~~h~~~~~~al~~~---~g--~~Vl~EKP~a~~~~e~ 116 (376)
++. ...|..+.+.+++. .--+.++++||..-..++...-+.| .| .-|.+|||++.+++.|
T Consensus 95 Y~~~d~~~~e~y~~L~~~l~~~~~~~~~~~~~~~rifYLA~PP~~f~~i~~~L~~~~l~~~g~~~RiviEKPFG~Dl~SA 174 (491)
T PLN02539 95 YVSGAYDSEEGFRRLDKEISEHEISKNSAEGSSRRLFYLALPPSVYPPVCKMIKKCCMNKSGLWTRIVVEKPFGKDLESA 174 (491)
T ss_pred EEecCCCChHHHHHHHHHHHHHhhhccccCCCCceEEEEecChHHHHHHHHHHHHhcCCCCCCceEEEEECCCCCCHHHH
Confidence 010 01122233333320 1237899999987655555443321 12 4799999999999999
Q ss_pred HHHHHHHH
Q 017143 117 KKVVDAAR 124 (376)
Q Consensus 117 ~~l~~~a~ 124 (376)
++|-+...
T Consensus 175 ~~Ln~~l~ 182 (491)
T PLN02539 175 EELSSQIG 182 (491)
T ss_pred HHHHHHHH
Confidence 99998773
No 317
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=94.83 E-value=0.14 Score=43.53 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=47.4
Q ss_pred ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc----CCCCC--ccCCHH---HHhhCCCC
Q 017143 6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF----DWPLK--VFPGHQ---ELLDSGLC 75 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~----~~~~~--~~~~~~---~~l~~~~~ 75 (376)
..++.|+|. |.+|+..+..+... +.+++ +++|+.+ +++++++++ +..+. ...+.+ +++.. .
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~---g~~V~-l~~R~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 98 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE---GARVV-LVGRDLE---RAQKAADSLRARFGEGVGAVETSDDAARAAAIKG--A 98 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC---CCEEE-EEcCCHH---HHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--C
Confidence 468999995 99999888887764 56665 5678876 455554432 33211 123343 45544 8
Q ss_pred CEEEEeCCCCcc
Q 017143 76 DVVVVSTPNMTH 87 (376)
Q Consensus 76 D~V~i~t~~~~h 87 (376)
|+|+.+||....
T Consensus 99 diVi~at~~g~~ 110 (194)
T cd01078 99 DVVFAAGAAGVE 110 (194)
T ss_pred CEEEECCCCCce
Confidence 999999987665
No 318
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.82 E-value=0.12 Score=49.86 Aligned_cols=91 Identities=10% Similarity=-0.025 Sum_probs=60.0
Q ss_pred eeEEEEeCChh-hHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHh----cCCC--CCccCCHHHHhhCCCCCEE
Q 017143 7 VKYGIIGMGMM-GREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANA----FDWP--LKVFPGHQELLDSGLCDVV 78 (376)
Q Consensus 7 ~~v~iiG~G~~-g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~l~~~~~D~V 78 (376)
+||+|||.|+. +...+..+.+.. .-...-+.++|+|+++++...+++++ .|.+ +..++|.+++|.. .|.|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g--ADfV 78 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD--ADFV 78 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC--CCEE
Confidence 58999999984 334555554442 12333455899999988766665554 4544 5678999999987 8999
Q ss_pred EEeCCCCcc--HHHHHH-HHcCCCCC
Q 017143 79 VVSTPNMTH--YQILMD-IINHPKPH 101 (376)
Q Consensus 79 ~i~t~~~~h--~~~~~~-al~~~~g~ 101 (376)
+......-+ ...-.+ .++ .|.
T Consensus 79 i~~irvGg~~~r~~De~Ip~k--yGi 102 (437)
T cd05298 79 FAQIRVGGYAMREQDEKIPLK--HGV 102 (437)
T ss_pred EEEeeeCCchHHHHHHhHHHH--cCc
Confidence 988776543 222222 477 664
No 319
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.81 E-value=0.43 Score=45.94 Aligned_cols=107 Identities=12% Similarity=0.136 Sum_probs=69.5
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeC----------CChhhHHHHHHHHHhc--CCC--CC----ccCCH
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIAD----------PHLQSRQQALKLANAF--DWP--LK----VFPGH 66 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d----------~~~~~~~~~~~~~~~~--~~~--~~----~~~~~ 66 (376)
+..||+|.|.|.+|...+..|... +.+|++|+| .|.+. ..+..++. .+. .. .+-+-
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~---GakVVavsDs~G~iyn~~GLD~~~---L~~~k~~~~~~l~~~~~~~~~~~i~~ 304 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQL---GAKVVTCSDSSGYVYDEEGIDLEK---LKEIKEVRRGRISEYAEEFGAEYLEG 304 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCceEECCCCCCHHH---HHHHHHhcCCchhhhhhhcCCeecCC
Confidence 358999999999999888877765 899999999 66653 33332221 111 00 12244
Q ss_pred HHHhhCCCCCEEEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143 67 QELLDSGLCDVVVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120 (376)
Q Consensus 67 ~~~l~~~~~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~ 120 (376)
++++.. ++|+.+=|+.. .-+.+.+.+..+ .+..+++|--=.....++.+++
T Consensus 305 ~~i~~~-d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L 356 (445)
T PRK09414 305 GSPWSV-PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVF 356 (445)
T ss_pred cccccc-CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHH
Confidence 555554 58988887764 577777777766 5667888864433344455544
No 320
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.81 E-value=0.1 Score=47.40 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=56.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--------HHHHHHHHhcCCCCCccCC-------HHHHh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--------QQALKLANAFDWPLKVFPG-------HQELL 70 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~~~~~~~~~~~-------~~~~l 70 (376)
++||.+.|+-.++..++.+|... ++++++|+..-+... ...+++|.++|+| +|+- +.+.+
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~---~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ip--v~qP~~l~~~e~~~~l 75 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEA---GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIP--VFQPEKLNDPEFLEEL 75 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhC---CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCc--eeccccCCcHHHHHHH
Confidence 48999999999999888888886 499999996544332 2357788899987 4432 66777
Q ss_pred hCCCCCEEEEeCCC
Q 017143 71 DSGLCDVVVVSTPN 84 (376)
Q Consensus 71 ~~~~~D~V~i~t~~ 84 (376)
++.++|+++++.--
T Consensus 76 ~~l~~D~ivvvayG 89 (307)
T COG0223 76 AALDPDLIVVVAYG 89 (307)
T ss_pred hccCCCEEEEEehh
Confidence 77789998887753
No 321
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.78 E-value=0.88 Score=42.23 Aligned_cols=133 Identities=11% Similarity=0.041 Sum_probs=72.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
-+|.|.|+|.+|...+...+. .+..+++ .++++++. ++++++|.+ .+++..+. - ....|++++++....
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~---~G~~vi~-~~~~~~~~----~~a~~~Ga~-~vi~~~~~-~-~~~~d~~i~~~~~~~ 235 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALA---QGATVHV-MTRGAAAR----RLALALGAA-SAGGAYDT-P-PEPLDAAILFAPAGG 235 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHH---CCCeEEE-EeCChHHH----HHHHHhCCc-eecccccc-C-cccceEEEECCCcHH
Confidence 378999999998776654444 4777665 46666643 455667765 33332111 1 124788888887766
Q ss_pred cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143 87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG 156 (376)
....+.++++.+ |+-|++=-+..... .. .+.... .+ ++.+.-..... ...+..+.+++++|++.
T Consensus 236 ~~~~~~~~l~~~-G~~v~~G~~~~~~~-~~-~~~~~~-~~-~~~i~g~~~~~-~~~~~~~~~l~~~g~i~ 299 (329)
T TIGR02822 236 LVPPALEALDRG-GVLAVAGIHLTDTP-PL-NYQRHL-FY-ERQIRSVTSNT-RADAREFLELAAQHGVR 299 (329)
T ss_pred HHHHHHHhhCCC-cEEEEEeccCccCC-CC-CHHHHh-hC-CcEEEEeecCC-HHHHHHHHHHHHhCCCe
Confidence 788888999853 55555432211000 00 011222 12 33333222221 23456677888888774
No 322
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=94.78 E-value=0.88 Score=40.97 Aligned_cols=98 Identities=11% Similarity=0.117 Sum_probs=58.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCc-cCCHHHHh-hCCCCCEEEEeC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKV-FPGHQELL-DSGLCDVVVVST 82 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l-~~~~~D~V~i~t 82 (376)
.-+|..||+|. |...+...... .+..++++ +|++++.++.+++..++.+++ +.. ..+++++- .+..+|+|+...
T Consensus 78 g~~VLDiG~G~-G~~~~~~a~~~-g~~~~v~g-vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 78 GETVLDLGSGG-GFDCFLAARRV-GPTGKVIG-VDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCEEEEeCCCC-CHHHHHHHHHh-CCCCEEEE-ECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 35899999997 76433333332 24557776 699998887777776666654 111 24565543 233589887554
Q ss_pred C----CC--ccHHHHHHHHcCCCCCeEEEec
Q 017143 83 P----NM--THYQILMDIINHPKPHHVLVEK 107 (376)
Q Consensus 83 ~----~~--~h~~~~~~al~~~~g~~Vl~EK 107 (376)
. ++ .-...+.++|+-| |+-++.+-
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~ 184 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPG-GRFAISDV 184 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCC-cEEEEEEe
Confidence 2 11 1244566678854 66666554
No 323
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.78 E-value=0.14 Score=43.82 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=29.3
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH 42 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~ 42 (376)
+..||+|||+|.+|...+..+... ++.-+.++|.|
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA---GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCC
Confidence 457899999999999999888885 77555588998
No 324
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.78 E-value=0.12 Score=46.57 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=50.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHhhCCCCCEEEEeCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
-++.|+|+|..++..+.+|++. ++.=+.|+.|+.+ +++++++.++-. . .....+.++-...+.|++|-+||-
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~---g~~~i~V~NRt~~---ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEA---GAKRITVVNRTRE---RAEELADLFGELGAAVEAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHc---CCCEEEEEeCCHH---HHHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence 5799999999999998888886 6554558999988 566666655421 0 011222222211148999999997
Q ss_pred CccH
Q 017143 85 MTHY 88 (376)
Q Consensus 85 ~~h~ 88 (376)
..+.
T Consensus 201 Gm~~ 204 (283)
T COG0169 201 GMAG 204 (283)
T ss_pred CCCC
Confidence 6654
No 325
>PLN02494 adenosylhomocysteinase
Probab=94.77 E-value=0.21 Score=48.18 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=51.3
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
-+++|+|+|.+|+..+..++.. +.+|+ ++++++.+.. .+...|+. . .++++++.. .|+|+.++.+..
T Consensus 255 KtVvViGyG~IGr~vA~~aka~---Ga~VI-V~e~dp~r~~----eA~~~G~~--v-v~leEal~~--ADVVI~tTGt~~ 321 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA---GARVI-VTEIDPICAL----QALMEGYQ--V-LTLEDVVSE--ADIFVTTTGNKD 321 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEeCCchhhH----HHHhcCCe--e-ccHHHHHhh--CCEEEECCCCcc
Confidence 5899999999999988887765 67755 6888876322 22334543 2 267888865 798888665432
Q ss_pred c-HHHHHHHHc
Q 017143 87 H-YQILMDIIN 96 (376)
Q Consensus 87 h-~~~~~~al~ 96 (376)
- ..-.++.++
T Consensus 322 vI~~e~L~~MK 332 (477)
T PLN02494 322 IIMVDHMRKMK 332 (477)
T ss_pred chHHHHHhcCC
Confidence 1 244555566
No 326
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.76 E-value=0.18 Score=40.20 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=28.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
..||+|+|+|.+|...+..|... ++.-+.++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~---Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS---GVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH---TTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHh---CCCceeecCCcc
Confidence 46999999999999999999887 665566777754
No 327
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.75 E-value=0.23 Score=43.53 Aligned_cols=71 Identities=21% Similarity=0.237 Sum_probs=44.2
Q ss_pred EEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccCCHHHHhhC-CCCCEEEEeCCC
Q 017143 9 YGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFPGHQELLDS-GLCDVVVVSTPN 84 (376)
Q Consensus 9 v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~-~~~D~V~i~t~~ 84 (376)
|+|+|+ |..|+..+..|.+ .+++|.+++-.... +.++++.. .|+.+ --|++.+.|-+. .++|+|+++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~--~~~~~l~~-~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSS--DRAQQLQA-LGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHH--HHHHHHHH-TTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccch--hhhhhhhc-ccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689995 9999999998888 48999987744322 23444433 34431 224444443321 248999999984
Q ss_pred C
Q 017143 85 M 85 (376)
Q Consensus 85 ~ 85 (376)
.
T Consensus 75 ~ 75 (233)
T PF05368_consen 75 S 75 (233)
T ss_dssp S
T ss_pred c
Confidence 4
No 328
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.75 E-value=0.14 Score=47.05 Aligned_cols=72 Identities=26% Similarity=0.230 Sum_probs=43.8
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHH-HHHHHHh---cCCC--CCccCCHHHHhhCCCCCEEE
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQ-ALKLANA---FDWP--LKVFPGHQELLDSGLCDVVV 79 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~---~~~~--~~~~~~~~~~l~~~~~D~V~ 79 (376)
|+||+|||+|.+|...+..+... .-.+++ ++|++++.... +.++... .+.. ++.++++++ +.+ .|+|+
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~--~~~ev~-L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~--aDiVi 75 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK--ELGDVV-LFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG--SDVVV 75 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEE-EEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC--CCEEE
Confidence 36999999999999877777664 212544 77998875421 1112111 1111 233467865 444 89999
Q ss_pred EeCC
Q 017143 80 VSTP 83 (376)
Q Consensus 80 i~t~ 83 (376)
++..
T Consensus 76 i~~~ 79 (307)
T PRK06223 76 ITAG 79 (307)
T ss_pred ECCC
Confidence 8853
No 329
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.67 E-value=1 Score=41.75 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=77.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcE-EEEEeCCChhhHHHHHHHHHhcCCCCCcc--CC--HHHH---hhCCCCCEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVS-VVCIADPHLQSRQQALKLANAFDWPLKVF--PG--HQEL---LDSGLCDVV 78 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~---l~~~~~D~V 78 (376)
-+|.|+|+|.+|...+..++.. +.+ +++ .++++++.+ +++++|.. .++ .+ .+++ .....+|+|
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~---G~~~vi~-~~~~~~~~~----~~~~~ga~-~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARAL---GAEDVIG-VDPSPERLE----LAKALGAD-FVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEE-ECCCHHHHH----HHHHhCCC-EEEcCCcchHHHHHHHhCCCCCCEE
Confidence 4789999999998877666654 666 665 667766433 34456654 222 11 2222 223358999
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG 156 (376)
+-++........+.++++. .|+-|++--+...+.. ...... .+ ++.+.-.+... ...+..+.+++.+|.+-
T Consensus 236 id~~g~~~~~~~~~~~l~~-~G~~v~~g~~~~~~~~---~~~~~~-~~-~~~i~g~~~~~-~~~~~~~~~~~~~g~i~ 306 (339)
T cd08239 236 IECSGNTAARRLALEAVRP-WGRLVLVGEGGELTIE---VSNDLI-RK-QRTLIGSWYFS-VPDMEECAEFLARHKLE 306 (339)
T ss_pred EECCCCHHHHHHHHHHhhc-CCEEEEEcCCCCcccC---cHHHHH-hC-CCEEEEEecCC-HHHHHHHHHHHHcCCCC
Confidence 9999877766777888874 3655555332221111 112233 22 44443332222 23577778888887764
No 330
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.65 E-value=0.36 Score=41.28 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=29.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
.-||.|||+|..|...+..|... ++.-+.++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~---GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS---GIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc---CCCEEEEEECCc
Confidence 46899999999999999988885 787777888764
No 331
>PLN02827 Alcohol dehydrogenase-like
Probab=94.65 E-value=0.48 Score=44.98 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=77.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C----CHHHHhh---CCCCCE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--P----GHQELLD---SGLCDV 77 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~---~~~~D~ 77 (376)
-+|.|+|+|.+|...+...+.. ++..+.++++++++.+ +++++|.+ .++ . ++.+.+. ...+|+
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~---G~~~vi~~~~~~~~~~----~a~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~ 266 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLR---GASQIIGVDINPEKAE----KAKTFGVT-DFINPNDLSEPIQQVIKRMTGGGADY 266 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEECCCHHHHH----HHHHcCCc-EEEcccccchHHHHHHHHHhCCCCCE
Confidence 4788999999999877666654 6764555677776433 44556654 121 1 3333332 125899
Q ss_pred EEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHHHHcCCC
Q 017143 78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQIVKSGSI 155 (376)
Q Consensus 78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~i~~g~i 155 (376)
|+-++........++++++.+.|+-|++--|.. . .......... .+ ++.+.-.+...| ...+..+.+++++|.|
T Consensus 267 vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~-~-~~~~~~~~~~-~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i 342 (378)
T PLN02827 267 SFECVGDTGIATTALQSCSDGWGLTVTLGVPKA-K-PEVSAHYGLF-LS-GRTLKGSLFGGWKPKSDLPSLVDKYMNKEI 342 (378)
T ss_pred EEECCCChHHHHHHHHhhccCCCEEEEECCcCC-C-ccccccHHHH-hc-CceEEeeecCCCchhhhHHHHHHHHHcCCC
Confidence 999998777778888888732245555433311 0 0110011223 22 334433233333 2356777888888766
Q ss_pred C
Q 017143 156 G 156 (376)
Q Consensus 156 G 156 (376)
-
T Consensus 343 ~ 343 (378)
T PLN02827 343 M 343 (378)
T ss_pred C
Confidence 4
No 332
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.63 E-value=0.14 Score=47.47 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=68.2
Q ss_pred ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
..+|.|+|+ |.+|...++.+... .++.-+.+++++.+ ++.+++++++.. ...++++.+.. +|+|+.+|..
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~--~gv~~lilv~R~~~---rl~~La~el~~~--~i~~l~~~l~~--aDiVv~~ts~ 225 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAK--TGVAELLLVARQQE---RLQELQAELGGG--KILSLEEALPE--ADIVVWVASM 225 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhh--CCCCEEEEEcCCHH---HHHHHHHHhccc--cHHhHHHHHcc--CCEEEECCcC
Confidence 468999998 89999988888653 34433446788876 566666666422 23467788876 8999988865
Q ss_pred CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 017143 85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQV 133 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v 133 (376)
.....+-.+-++ ++ -++|+=-+=.|++..- . + .|+.++-
T Consensus 226 ~~~~~I~~~~l~--~~-~~viDiAvPRDVd~~v-----~-~-~~V~v~~ 264 (340)
T PRK14982 226 PKGVEIDPETLK--KP-CLMIDGGYPKNLDTKV-----Q-G-PGIHVLK 264 (340)
T ss_pred CcCCcCCHHHhC--CC-eEEEEecCCCCCCccc-----C-C-CCEEEEe
Confidence 443222233445 33 6777665555555311 2 3 5766644
No 333
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.61 E-value=0.11 Score=48.99 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=48.3
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-CccC---CHHHHhhCCCCCEEEE
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFP---GHQELLDSGLCDVVVV 80 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~l~~~~~D~V~i 80 (376)
..-++.|||+|.+|...+..+..+ +.+ +.++|++++ +++.+.+.++..+ ..+. ++++.+.. .|+|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l---Ga~-V~v~d~~~~---~~~~l~~~~g~~v~~~~~~~~~l~~~l~~--aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL---GAT-VTILDINID---RLRQLDAEFGGRIHTRYSNAYEIEDAVKR--ADLLIG 236 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC---CCe-EEEEECCHH---HHHHHHHhcCceeEeccCCHHHHHHHHcc--CCEEEE
Confidence 356899999999999998888876 667 556899887 4555555665321 1122 34555554 899998
Q ss_pred eCC
Q 017143 81 STP 83 (376)
Q Consensus 81 ~t~ 83 (376)
+++
T Consensus 237 a~~ 239 (370)
T TIGR00518 237 AVL 239 (370)
T ss_pred ccc
Confidence 874
No 334
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.58 E-value=0.1 Score=52.80 Aligned_cols=127 Identities=10% Similarity=0.163 Sum_probs=79.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH--HHHhhC---CCCCEEEE
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH--QELLDS---GLCDVVVV 80 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~---~~~D~V~i 80 (376)
+.+|.|+|.|.+|+...+.+.+. +.+++ +.|.|+++ .+++ +++|.+ ..|.|. .+.|++ .+.|+|++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vv-vID~d~~~---v~~~-~~~g~~-v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN---KMRIT-VLERDISA---VNLM-RKYGYK-VYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC---CCCEE-EEECCHHH---HHHH-HhCCCe-EEEeeCCCHHHHHhcCCccCCEEEE
Confidence 36899999999999888777764 77766 56899884 4333 346765 444432 455553 46899999
Q ss_pred eCCCCccHHHHHHHHc-CCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143 81 STPNMTHYQILMDIIN-HPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK 151 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~-~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~ 151 (376)
+++++..-..+...++ .....+|++ -+.+.+++++|.++- .... ....|....+..++.+.
T Consensus 471 ~~~d~~~n~~i~~~~r~~~p~~~Iia---Ra~~~~~~~~L~~~G-----a~~v--v~e~~es~l~l~~~~L~ 532 (601)
T PRK03659 471 TCNEPEDTMKIVELCQQHFPHLHILA---RARGRVEAHELLQAG-----VTQF--SRETFSSALELGRKTLV 532 (601)
T ss_pred EeCCHHHHHHHHHHHHHHCCCCeEEE---EeCCHHHHHHHHhCC-----CCEE--EccHHHHHHHHHHHHHH
Confidence 9999765544443333 112345555 466777777776654 2211 24455555555555554
No 335
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.56 E-value=0.64 Score=43.66 Aligned_cols=138 Identities=16% Similarity=0.115 Sum_probs=75.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHH-Hhh---CCCCCEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQE-LLD---SGLCDVV 78 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~l~---~~~~D~V 78 (376)
-+|.|+|+|.+|...+...+.. +.+.+.++++++++++ +++++|.+ .++ .++.+ +.+ ...+|+|
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~---G~~~Vi~~~~~~~~~~----~~~~~Ga~-~~i~~~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA---GASKIIAVDIDDRKLE----WAREFGAT-HTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCHHHHH----HHHHcCCc-eEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence 4789999999998877665554 6753335577766433 34556654 222 13322 222 2358999
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccc--cCHHHHHHHHHHHcCCCC
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYR--YMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r--~~p~~~~~k~~i~~g~iG 156 (376)
+-++........+..+++.+ |+-|++--+......+. .+.... .+ ++.+.-.+... ....+..+.+++++|.|-
T Consensus 250 id~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~~~~-~~~~~~-~~-~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~ 325 (358)
T TIGR03451 250 IDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTLEL-PLLDVF-GR-GGALKSSWYGDCLPERDFPMLVDLYLQGRLP 325 (358)
T ss_pred EECCCCHHHHHHHHHHhccC-CEEEEECCCCCCceeec-cHHHHh-hc-CCEEEEeecCCCCcHHHHHHHHHHHHcCCCC
Confidence 99998766667778888743 66565532211000011 112233 22 33333222111 234566777888888774
No 336
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.55 E-value=0.32 Score=43.22 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHH
Q 017143 44 QSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKV 119 (376)
Q Consensus 44 ~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l 119 (376)
+-++..++..+++|+++ .+.+ +.+.+.+. +|++=|.+-+...++++.++-+ .||+|++=|+...+++|..-.
T Consensus 74 eGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~--vDilQIgAr~~rntdLL~a~~~--t~kpV~lKrGqf~s~~e~~~a 149 (281)
T PRK12457 74 EGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV--ADVLQVPAFLARQTDLVVAIAK--TGKPVNIKKPQFMSPTQMKHV 149 (281)
T ss_pred HHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh--CeEEeeCchhhchHHHHHHHhc--cCCeEEecCCCcCCHHHHHHH
Confidence 34456677888999982 2222 33444444 8999999999999999999999 899999999999999875555
Q ss_pred HHHHH
Q 017143 120 VDAAR 124 (376)
Q Consensus 120 ~~~a~ 124 (376)
.+...
T Consensus 150 ae~i~ 154 (281)
T PRK12457 150 VSKCR 154 (281)
T ss_pred HHHHH
Confidence 55443
No 337
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.53 E-value=0.2 Score=47.01 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=30.1
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
+.-||.|||+|..|...+..|... ++.-+.++|.|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~---Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGA---GVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCE
Confidence 357999999999999998888875 777777888875
No 338
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=94.52 E-value=0.67 Score=42.90 Aligned_cols=89 Identities=11% Similarity=0.172 Sum_probs=68.1
Q ss_pred hhhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143 43 LQSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK 118 (376)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~ 118 (376)
.+.+...++.++++|+++ ..++ +.+.+ .+. +|++-|++.+-.+.++..++-+ .||+|++.++++.+++|...
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l-~~~-vd~lqIgAr~~~N~~LL~~va~--~~kPViLk~G~~~ti~E~l~ 218 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELV-AEY-VDILQIGARNMQNFDLLKEVGK--TNKPVLLKRGMSATIEEWLM 218 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHH-HHh-CCeEEECcccccCHHHHHHHHc--CCCcEEEeCCCCCCHHHHHH
Confidence 344456677788899982 3333 34444 444 8999999999999999999999 89999999999999999999
Q ss_pred HHHHHHhCCCeEEEEee
Q 017143 119 VVDAARKRPDILVQVGL 135 (376)
Q Consensus 119 l~~~a~~~~~~~~~v~~ 135 (376)
..+.....++-.+...+
T Consensus 219 A~e~i~~~GN~~viL~e 235 (335)
T PRK08673 219 AAEYILAEGNPNVILCE 235 (335)
T ss_pred HHHHHHHcCCCeEEEEE
Confidence 88888655554455544
No 339
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.51 E-value=0.76 Score=39.19 Aligned_cols=133 Identities=13% Similarity=0.139 Sum_probs=84.4
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEe-CC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVS-TP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~-t~ 83 (376)
++||+||..|..|.+....+...+ -.-++++|.+. ++ .++ ...+..+++|.. ++.|+++-. ..
T Consensus 1 ~mki~vlt~g~yG~R~~~nl~~~~-f~~~~v~v~~~-Pe------------~~~-~fie~P~~~Lp~~~e~Di~va~~lH 65 (224)
T COG1810 1 MMKILVLTDGEYGKRAVNNLACKG-FKNQFVAVKEY-PE------------ELP-DFIEEPEDLLPKLPEADIVVAYGLH 65 (224)
T ss_pred CcEEEEEeeccchHHHHHhHhhhc-cccceEEEEec-cc------------ccc-chhhCHHHhcCCCCCCCEEEEeccC
Confidence 589999999999999988887631 23577777776 33 122 344666777776 778977754 66
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHH--HHHHHHHHHcCCCCceE
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPP--VAKLIQIVKSGSIGQVK 159 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~--~~~~k~~i~~g~iG~i~ 159 (376)
|+.-+.++.+|...+ -+.|++ |....-.-.++|.+.+ +..|+.+..-..+.--.. .-.+++.++. +|++.
T Consensus 66 PDl~~~L~e~~~~~~-~~alIv--p~~~~~g~rkqL~~~~-~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~--FG~P~ 137 (224)
T COG1810 66 PDLLLALPEKAAEGG-VKALIV--PAEPPEGLRKQLKEFC-EELGVEFEAPEPFCSLEPNENPHIDEFAER--FGKPE 137 (224)
T ss_pred ccHHHHHHHHHHhCC-ccEEEE--ecCCChhHHHHHHHHh-hhcceeeecCCccccCCCCCChHHHHHHHH--cCCce
Confidence 788899999886632 345554 3444446777888888 555777644433332111 1244455542 46653
No 340
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=94.50 E-value=0.24 Score=43.99 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHhcCCCC--CccC--CHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHH
Q 017143 43 LQSRQQALKLANAFDWPL--KVFP--GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKK 118 (376)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~ 118 (376)
++-++..++..+++|+|+ .+.+ +.+.+.+. +|++=|..-+....++..++-+ .||+|++=|++..+++|..-
T Consensus 73 eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~--~DilQIgAr~~rqtdLL~a~~~--tgkpV~lKkGq~~t~~e~~~ 148 (290)
T PLN03033 73 AEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV--ADIIQIPAFLCRQTDLLVAAAK--TGKIINIKKGQFCAPSVMRN 148 (290)
T ss_pred HHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh--CcEEeeCcHHHHHHHHHHHHHc--cCCeEEeCCCCCCCHHHHHH
Confidence 344566678888999982 2222 33444444 7999999999999999999999 89999999999999999888
Q ss_pred HHHHHHhCCCeEEEEe
Q 017143 119 VVDAARKRPDILVQVG 134 (376)
Q Consensus 119 l~~~a~~~~~~~~~v~ 134 (376)
.++.....++-.+++.
T Consensus 149 aaeki~~~GN~~viLc 164 (290)
T PLN03033 149 SAEKVRLAGNPNVMVC 164 (290)
T ss_pred HHHHHHHcCCCcEEEE
Confidence 8887755544444443
No 341
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.50 E-value=0.17 Score=48.60 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=52.3
Q ss_pred eeEEEEeCChh-hHHHHHHhhhh-cCCCcEEEEEeCCC-hhhHHHHHHHH----HhcCCC--CCccCCHHHHhhCCCCCE
Q 017143 7 VKYGIIGMGMM-GREHFINLHHL-RSQGVSVVCIADPH-LQSRQQALKLA----NAFDWP--LKVFPGHQELLDSGLCDV 77 (376)
Q Consensus 7 ~~v~iiG~G~~-g~~~~~~~~~~-~~~~~~~~~v~d~~-~~~~~~~~~~~----~~~~~~--~~~~~~~~~~l~~~~~D~ 77 (376)
+||.|||.|+. +...+..+.+. ..-...-+.++|+| +++++...+++ ++.+.+ +..++|.+++|.. .|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g--adf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG--ADF 78 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC--CCE
Confidence 58999999985 23455555542 11233445589999 78775544444 445543 5678899999987 799
Q ss_pred EEEeCCCCc
Q 017143 78 VVVSTPNMT 86 (376)
Q Consensus 78 V~i~t~~~~ 86 (376)
|+++.....
T Consensus 79 Vi~~~~vg~ 87 (419)
T cd05296 79 VFTQIRVGG 87 (419)
T ss_pred EEEEEeeCC
Confidence 998877543
No 342
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.48 E-value=0.21 Score=43.30 Aligned_cols=129 Identities=12% Similarity=0.044 Sum_probs=70.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
..+|.|||.|.+|.+-+..|.+. +.+|+-|. +.-.. ..+++++...+. -+-|+ . +-++ ..++|++||.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~---gA~VtVVa-p~i~~--el~~l~~~~~i~~~~r~~~-~-~dl~--g~~LViaATd 94 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK---GCYVYILS-KKFSK--EFLDLKKYGNLKLIKGNYD-K-EFIK--DKHLIVIATD 94 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEEc-CCCCH--HHHHHHhCCCEEEEeCCCC-h-HHhC--CCcEEEECCC
Confidence 46899999999998878777775 67766443 43321 345555544443 12232 1 2233 4899999998
Q ss_pred CC-ccHHHHHHHHcCCCCCeEEE-ecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143 84 NM-THYQILMDIINHPKPHHVLV-EKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK 151 (376)
Q Consensus 84 ~~-~h~~~~~~al~~~~g~~Vl~-EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~ 151 (376)
+. ....+...|-+ +++.|.+ ..|- .+.=+.-+.-+++++.+.+.-.-.---..+.+|+.|+
T Consensus 95 D~~vN~~I~~~a~~--~~~lvn~vd~p~-----~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie 157 (223)
T PRK05562 95 DEKLNNKIRKHCDR--LYKLYIDCSDYK-----KGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVK 157 (223)
T ss_pred CHHHHHHHHHHHHH--cCCeEEEcCCcc-----cCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHH
Confidence 75 45555555555 5665553 3331 1111222222445566666544333233444555444
No 343
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=94.45 E-value=0.72 Score=42.10 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=56.4
Q ss_pred CCcEEEEEeCCChhhH--HHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHHHH----HHHcCCCCCeEE
Q 017143 31 QGVSVVCIADPHLQSR--QQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILM----DIINHPKPHHVL 104 (376)
Q Consensus 31 ~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~----~al~~~~g~~Vl 104 (376)
.+++|+ ++|++++.. ++.+.+ ++.|.. ..++..++.++ .|+|+++.|+..+..-+. ..+. .| +++
T Consensus 42 AGheV~-V~Drnrsa~e~e~~e~L-aeaGA~--~AaS~aEAAa~--ADVVIL~LPd~aaV~eVl~GLaa~L~--~G-aIV 112 (341)
T TIGR01724 42 AGHDVV-LAEPNREFMSDDLWKKV-EDAGVK--VVSDDKEAAKH--GEIHVLFTPFGKGTFSIARTIIEHVP--EN-AVI 112 (341)
T ss_pred CCCEEE-EEeCChhhhhhhhhHHH-HHCCCe--ecCCHHHHHhC--CCEEEEecCCHHHHHHHHHHHHhcCC--CC-CEE
Confidence 488876 789887632 122233 345754 77889999987 799999999988764442 2344 45 577
Q ss_pred EecCCCCCHHHHHHHHHH
Q 017143 105 VEKPLCTTVADCKKVVDA 122 (376)
Q Consensus 105 ~EKP~a~~~~e~~~l~~~ 122 (376)
|+-. +.+++.+.++.+-
T Consensus 113 ID~S-TIsP~t~~~~~e~ 129 (341)
T TIGR01724 113 CNTC-TVSPVVLYYSLEK 129 (341)
T ss_pred EECC-CCCHHHHHHHHHH
Confidence 7763 6688888877776
No 344
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.43 E-value=0.26 Score=48.39 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=34.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL 52 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~ 52 (376)
.-||.|+|+|.+|...+...+.+ +.+ |-++|+++++++.++++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l---GA~-V~a~D~~~~rle~aesl 207 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL---GAI-VRAFDTRPEVAEQVESM 207 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCE-EEEEeCCHHHHHHHHHc
Confidence 57999999999999998888877 566 55789999866555543
No 345
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.41 E-value=0.97 Score=42.37 Aligned_cols=135 Identities=10% Similarity=-0.006 Sum_probs=75.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhCCCCCEEEEeC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLANAFDWPLKVF--PGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~D~V~i~t 82 (376)
-+|.|+|+|.+|...+..++.. +.+++++... ++++ .++++++|...-.+ +++++......+|+|+-++
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~---G~~vi~~~~~~~~~~~----~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~ 246 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR---GFEVYVLNRRDPPDPK----ADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT 246 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCHHH----HHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc
Confidence 4799999999999887666654 6677765422 4443 23455666541011 1222211223589999999
Q ss_pred CCCccHHHHHHHHcCCCCCeEEEecCCC-----CCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCC
Q 017143 83 PNMTHYQILMDIINHPKPHHVLVEKPLC-----TTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGS 154 (376)
Q Consensus 83 ~~~~h~~~~~~al~~~~g~~Vl~EKP~a-----~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~ 154 (376)
........+.++++.+ |+-|++--+.. .+.... +.... .+ ++.+.-.+... ...+..+.+++.++.
T Consensus 247 g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~--~~~~~-~k-~~~i~g~~~~~-~~~~~~~~~~l~~~~ 317 (355)
T cd08230 247 GVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGEL--NRDLV-LG-NKALVGSVNAN-KRHFEQAVEDLAQWK 317 (355)
T ss_pred CCHHHHHHHHHHccCC-cEEEEEecCCCCCccccChhhh--hhhHh-hc-CcEEEEecCCc-hhhHHHHHHHHHhcc
Confidence 8766777788888753 66666644322 221111 12222 22 44443333222 234666777777655
No 346
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.41 E-value=0.15 Score=49.68 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=49.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc---CCHHHHhhC--CCCCEEEEe
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF---PGHQELLDS--GLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~--~~~D~V~i~ 81 (376)
++|.|+|+|.+|...+..|... +.+++ +.|++++ +.+++.++.+++ ..+ .+.+.+.+. .+.|+|+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~---g~~v~-vid~~~~---~~~~~~~~~~~~-~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE---NNDVT-VIDTDEE---RLRRLQDRLDVR-TVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCcEE-EEECCHH---HHHHHHhhcCEE-EEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 4799999999999988888764 77877 5688887 444444434544 111 222222221 358999999
Q ss_pred CCCCccHHH
Q 017143 82 TPNMTHYQI 90 (376)
Q Consensus 82 t~~~~h~~~ 90 (376)
++....-..
T Consensus 73 ~~~~~~n~~ 81 (453)
T PRK09496 73 TDSDETNMV 81 (453)
T ss_pred cCChHHHHH
Confidence 997644433
No 347
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.39 E-value=0.24 Score=48.42 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=56.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--HHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--QQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
-||+|+|+|..|...+..|++. +.+++ ++|.++... ....++ ++.|+.+....+..+.+. ++|+|+++..-
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~---G~~V~-~~D~~~~~~~~~~~~~l-~~~gi~~~~~~~~~~~~~--~~dlVV~Spgi 87 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL---GAKVT-AFDKKSEEELGEVSNEL-KELGVKLVLGENYLDKLD--GFDVIFKTPSM 87 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC---CCEEE-EECCCCCccchHHHHHH-HhCCCEEEeCCCChHHhc--cCCEEEECCCC
Confidence 4899999999998766666664 77765 588765311 111233 344654111122344454 38988776333
Q ss_pred CccHHHHHHHHcCCCCCeEEEe
Q 017143 85 MTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~E 106 (376)
....+.+.+|.+ .|.+|+.|
T Consensus 88 ~~~~p~~~~a~~--~~i~i~s~ 107 (458)
T PRK01710 88 RIDSPELVKAKE--EGAYITSE 107 (458)
T ss_pred CCCchHHHHHHH--cCCcEEec
Confidence 445577888888 88998864
No 348
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=94.38 E-value=0.075 Score=44.10 Aligned_cols=91 Identities=25% Similarity=0.218 Sum_probs=50.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-+.-++|.|..+......+.+.+..+++++|++|.++.... .. .-++| ....+++.+++.+.++|-|+|+.|..
T Consensus 78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~--~~---~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~ 152 (175)
T PF13727_consen 78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDPSDRG--PE---IDGVPVLGDLDDLPELVREHDIDEVIIALPWS 152 (175)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT---E---ETTEEEE--GGGHHHHHHHHT--EEEE--TTS
T ss_pred cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCchhhcc--Cc---ccCceeEcCHHHHHHHHHhCCCCEEEEEcCcc
Confidence 34467888888888788887766679999999998876311 10 11444 23456777888888899999999987
Q ss_pred ccHHH---HHHHHcCCCCCeEE
Q 017143 86 THYQI---LMDIINHPKPHHVL 104 (376)
Q Consensus 86 ~h~~~---~~~al~~~~g~~Vl 104 (376)
.+..+ +.+|-+ .|..|.
T Consensus 153 ~~~~i~~ii~~~~~--~~v~v~ 172 (175)
T PF13727_consen 153 EEEQIKRIIEELEN--HGVRVR 172 (175)
T ss_dssp -HHHHHHHHHHHHT--TT-EEE
T ss_pred CHHHHHHHHHHHHh--CCCEEE
Confidence 66433 223334 566654
No 349
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=94.35 E-value=1.7 Score=41.21 Aligned_cols=132 Identities=14% Similarity=0.212 Sum_probs=72.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHhhC-CCCCEEEEeCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELLDS-GLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~~D~V~i~t~ 83 (376)
-+|.|.|+|.+|...+...+.. +.+++++...++. ..++++++|.+ .++ .+.+++.+. ..+|+|+-++.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~---Ga~Vi~~~~~~~~----~~~~a~~lGa~-~~i~~~~~~~v~~~~~~~D~vid~~G 251 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAF---GLRVTVISRSSEK----EREAIDRLGAD-SFLVTTDSQKMKEAVGTMDFIIDTVS 251 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHc---CCeEEEEeCChHH----hHHHHHhCCCc-EEEcCcCHHHHHHhhCCCcEEEECCC
Confidence 4789999999998877665554 6787766443332 23445567765 222 222222221 24899999987
Q ss_pred CCccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143 84 NMTHYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG 156 (376)
...-...+.++++.+ |+-|.+- +|...+. .... .+ ++.+. +....-...+..+-+++.+|+|-
T Consensus 252 ~~~~~~~~~~~l~~~-G~iv~vG~~~~~~~~~~------~~~~-~~-~~~i~-g~~~~~~~~~~~~~~l~~~g~i~ 317 (375)
T PLN02178 252 AEHALLPLFSLLKVS-GKLVALGLPEKPLDLPI------FPLV-LG-RKMVG-GSQIGGMKETQEMLEFCAKHKIV 317 (375)
T ss_pred cHHHHHHHHHhhcCC-CEEEEEccCCCCCccCH------HHHH-hC-CeEEE-EeCccCHHHHHHHHHHHHhCCCc
Confidence 655566777888743 5555442 3322222 1222 12 33332 22211123456666777777763
No 350
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=94.24 E-value=0.15 Score=47.00 Aligned_cols=76 Identities=16% Similarity=0.068 Sum_probs=52.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH--------HHHHHHHHhcCCCCCccCC-----HHHHhhCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR--------QQALKLANAFDWPLKVFPG-----HQELLDSG 73 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~~~~~~~~~~~-----~~~~l~~~ 73 (376)
|||.++|++.++...+..|.+. ++++++|+...+.+. ...+++|+++|+|+....+ ..+.+.+.
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~---~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~ 77 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED---NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVREL 77 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHhh
Confidence 5899999999998888888664 689999996533211 2367888899998322222 22345555
Q ss_pred CCCEEEEeCCCC
Q 017143 74 LCDVVVVSTPNM 85 (376)
Q Consensus 74 ~~D~V~i~t~~~ 85 (376)
.+|+++++.-..
T Consensus 78 ~~Dliv~~~~~~ 89 (313)
T TIGR00460 78 KPDVIVVVSFGK 89 (313)
T ss_pred CCCEEEEccchh
Confidence 799988877533
No 351
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=94.24 E-value=0.99 Score=40.01 Aligned_cols=118 Identities=13% Similarity=0.192 Sum_probs=70.6
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCC-CCCeEEEecCCCC
Q 017143 33 VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHP-KPHHVLVEKPLCT 111 (376)
Q Consensus 33 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~-~g~~Vl~EKP~a~ 111 (376)
.++ .|++|+++ ++++++++||+. .+.+.+++.++ .|+|++|++|+.-.++..+ ++.. ...++++-==.+.
T Consensus 10 ~~I-~v~~R~~e---~~~~l~~~~g~~--~~~~~~e~~~~--aDiIiLaVkP~~i~~vl~~-l~~~~~~~~~ivS~~agi 80 (245)
T TIGR00112 10 YDI-IVINRSPE---KLAALAKELGIV--ASSDAQEAVKE--ADVVFLAVKPQDLEEVLSE-LKSEKGKDKLLISIAAGV 80 (245)
T ss_pred CeE-EEEcCCHH---HHHHHHHHcCcE--EeCChHHHHhh--CCEEEEEeCHHHHHHHHHH-HhhhccCCCEEEEecCCC
Confidence 344 47899887 677888888854 67888888876 7999999996655554433 3200 1234666555677
Q ss_pred CHHHHHHHHHHH----H--------hCCCeEEEEeeccccCH-HHHHHHHHHHcCCCCceEEEE
Q 017143 112 TVADCKKVVDAA----R--------KRPDILVQVGLEYRYMP-PVAKLIQIVKSGSIGQVKMVA 162 (376)
Q Consensus 112 ~~~e~~~l~~~a----~--------~~~~~~~~v~~~~r~~p-~~~~~k~~i~~g~iG~i~~~~ 162 (376)
+.++.+++.... + -..|+... .+.....+ ....++++++ .+|++..+.
T Consensus 81 ~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~-~~~~~~~~~~~~~v~~lf~--~~G~~~~v~ 141 (245)
T TIGR00112 81 TLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAI-AANANVSEEDRALVLALFK--AVGEVVELP 141 (245)
T ss_pred CHHHHHHHcCCCCeEEEECCChHHHHhCCeEEE-ecCCCCCHHHHHHHHHHHH--hCCCEEEEC
Confidence 888877765311 0 11122221 12222222 3466677776 489887764
No 352
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.23 E-value=0.23 Score=48.54 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=65.1
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC--CHHHHhhCCCCCEEEEeC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--GHQELLDSGLCDVVVVST 82 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~D~V~i~t 82 (376)
.+.|+.|||+|..|...+.+++.. +...++|+.|.++.. .. ..-.|++ ++. ++.+++++..++-++|+-
T Consensus 115 ~~~r~lIiGAG~ag~~l~r~~~~~--~~~~pV~fiDdd~~~---~g--~~i~Gv~--V~g~~~i~~~v~~~~~~~iiiAi 185 (588)
T COG1086 115 NRIRLLIIGAGSAGDLLLRALRRD--PEYTPVAFLDDDPDL---TG--MKIRGVP--VLGRIEIERVVEELGIQLILIAI 185 (588)
T ss_pred CCCceEEEcCchHHHHHHHHHHhC--CCcceEEEECCChhh---cC--CEEecee--eechhHHHHHHHHcCCceEEEec
Confidence 468999999999999999999998 669999999988862 21 1124666 333 377888888899999999
Q ss_pred CCCccH---HHHHHHHcCCCCCeEE
Q 017143 83 PNMTHY---QILMDIINHPKPHHVL 104 (376)
Q Consensus 83 ~~~~h~---~~~~~al~~~~g~~Vl 104 (376)
|.-.+. ++...+-+ .|..|-
T Consensus 186 ps~~~~~~~~i~~~l~~--~~~~v~ 208 (588)
T COG1086 186 PSASQEERRRILLRLAR--TGIAVR 208 (588)
T ss_pred CCCCHHHHHHHHHHHHh--cCCcEE
Confidence 976553 34445555 554543
No 353
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.21 E-value=0.28 Score=43.30 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=29.8
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
.-||.|||+|.+|...+..|... ++.-+.++|.|.-
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~---Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA---GVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc---CCCEEEEEeCCcc
Confidence 46999999999999999888886 6666778888764
No 354
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.21 E-value=0.28 Score=49.21 Aligned_cols=122 Identities=10% Similarity=0.096 Sum_probs=72.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC--HHHHhhC---CCCCEEEEe
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG--HQELLDS---GLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~---~~~D~V~i~ 81 (376)
=++.|+|+|.+|+.....+.+. +.+++ +.|.|++ +.+++. ++|.+ ..+.| -++.+++ .+.|+|+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~---g~~vv-vId~d~~---~~~~~~-~~g~~-~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA---GIPLV-VIETSRT---RVDELR-ERGIR-AVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC---CCCEE-EEECCHH---HHHHHH-HCCCe-EEEcCCCCHHHHHhcCccccCEEEEE
Confidence 4789999999999988888775 66766 5788887 444443 45665 33332 2344442 468999999
Q ss_pred CCCCccHHHHHHHHcCC-CCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143 82 TPNMTHYQILMDIINHP-KPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK 151 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~-~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~ 151 (376)
++++.....+..+++.. ..++|+.= +.+.++.+.+.+ + |.. .-.+|....++++.+
T Consensus 489 ~~~~~~~~~iv~~~~~~~~~~~iiar---~~~~~~~~~l~~-~----Gad------~vv~p~~~~a~~i~~ 545 (558)
T PRK10669 489 IPNGYEAGEIVASAREKRPDIEIIAR---AHYDDEVAYITE-R----GAN------QVVMGEREIARTMLE 545 (558)
T ss_pred cCChHHHHHHHHHHHHHCCCCeEEEE---ECCHHHHHHHHH-c----CCC------EEEChHHHHHHHHHH
Confidence 99876544333333211 23455542 445555555532 2 333 333666666665554
No 355
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.19 E-value=0.23 Score=40.69 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=49.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
-++.|+|.|+.|+..+..++.+ +.+++ |++.||-+ ..++.. -|+. + .+.++++.. .|+++-+|.+..
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~---Ga~V~-V~e~DPi~--alqA~~--dGf~--v-~~~~~a~~~--adi~vtaTG~~~ 90 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL---GARVT-VTEIDPIR--ALQAAM--DGFE--V-MTLEEALRD--ADIFVTATGNKD 90 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT---T-EEE-EE-SSHHH--HHHHHH--TT-E--E-E-HHHHTTT---SEEEE-SSSSS
T ss_pred CEEEEeCCCcccHHHHHHHhhC---CCEEE-EEECChHH--HHHhhh--cCcE--e-cCHHHHHhh--CCEEEECCCCcc
Confidence 4799999999999999888887 77755 89999873 233332 3554 3 368888876 798888888643
Q ss_pred --cHHHHHHHHcCCCCCeEEEe
Q 017143 87 --HYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 87 --h~~~~~~al~~~~g~~Vl~E 106 (376)
..++ .+.++ .| .+++-
T Consensus 91 vi~~e~-~~~mk--dg-ail~n 108 (162)
T PF00670_consen 91 VITGEH-FRQMK--DG-AILAN 108 (162)
T ss_dssp SB-HHH-HHHS---TT-EEEEE
T ss_pred ccCHHH-HHHhc--CC-eEEec
Confidence 2333 33466 44 45554
No 356
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.18 E-value=0.38 Score=42.20 Aligned_cols=140 Identities=15% Similarity=0.127 Sum_probs=82.8
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhh--------------H--HHHHHHHH---hcC--CCCCcc
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQS--------------R--QQALKLAN---AFD--WPLKVF 63 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~--------------~--~~~~~~~~---~~~--~~~~~~ 63 (376)
+..+|.|||+|.+|...+..|... ++.=.-++|.|.-. . .|++.+++ +.+ +.+..+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~---GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~ 86 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARS---GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV 86 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 357899999999999999999886 55445566765310 0 12222222 222 111112
Q ss_pred ------CCHHHHhhCCCCCEEEEeCCCC-ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec
Q 017143 64 ------PGHQELLDSGLCDVVVVSTPNM-THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE 136 (376)
Q Consensus 64 ------~~~~~~l~~~~~D~V~i~t~~~-~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~ 136 (376)
++.++++.. ++|+|+.|+-+. ....+...|.+ .+++++.--=.+-- . +-..+.+.--+.
T Consensus 87 ~~~i~~~~~~~l~~~-~~D~VvdaiD~~~~k~~L~~~c~~--~~ip~I~s~g~g~~----------~-dp~~i~i~di~~ 152 (231)
T cd00755 87 EEFLTPDNSEDLLGG-DPDFVVDAIDSIRAKVALIAYCRK--RKIPVISSMGAGGK----------L-DPTRIRVADISK 152 (231)
T ss_pred eeecCHhHHHHHhcC-CCCEEEEcCCCHHHHHHHHHHHHH--hCCCEEEEeCCcCC----------C-CCCeEEEccEec
Confidence 245566643 489999887764 33455666777 77887775221110 0 112345555566
Q ss_pred cccCHHHHHHHHHHHcCCCC-ceEEE
Q 017143 137 YRYMPPVAKLIQIVKSGSIG-QVKMV 161 (376)
Q Consensus 137 ~r~~p~~~~~k~~i~~g~iG-~i~~~ 161 (376)
....|..+.+|+.+++..+- .+.-+
T Consensus 153 t~~~pla~~~R~~Lrk~~~~~~~~~v 178 (231)
T cd00755 153 TSGDPLARKVRKRLRKRGIFFGVPVV 178 (231)
T ss_pred cccCcHHHHHHHHHHHcCCCCCeEEE
Confidence 77789999999999765542 34444
No 357
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.16 E-value=0.26 Score=49.95 Aligned_cols=127 Identities=14% Similarity=0.161 Sum_probs=77.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCH--HHHhhC---CCCCEEEE
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH--QELLDS---GLCDVVVV 80 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~---~~~D~V~i 80 (376)
.-+|.|+|+|.+|+...+.+.+. +++++ +.|.|+++ .+++ +++|.+ ..|.|. .++|++ .+.|+|++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vv-vID~d~~~---v~~~-~~~g~~-v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS---GVKMT-VLDHDPDH---IETL-RKFGMK-VFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC---CCCEE-EEECCHHH---HHHH-HhcCCe-EEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 36899999999999888877764 77877 45999984 4443 345765 344432 345543 46899999
Q ss_pred eCCCCccHHHHHH-HHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143 81 STPNMTHYQILMD-IINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK 151 (376)
Q Consensus 81 ~t~~~~h~~~~~~-al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~ 151 (376)
+++++..-..+.. +-+.....+|++ -+.+.+++.+|.++- +... ....+.+.....++.++
T Consensus 471 ~~~d~~~n~~i~~~ar~~~p~~~iia---Ra~d~~~~~~L~~~G-----ad~v--~~e~~e~sl~l~~~~L~ 532 (621)
T PRK03562 471 AIDDPQTSLQLVELVKEHFPHLQIIA---RARDVDHYIRLRQAG-----VEKP--ERETFEGALKSGRLVLE 532 (621)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCeEEE---EECCHHHHHHHHHCC-----CCEE--ehhhHhHHHHHHHHHHH
Confidence 9988654444433 333112234544 356777777776553 1211 34455666666666665
No 358
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=94.12 E-value=0.22 Score=48.28 Aligned_cols=90 Identities=21% Similarity=0.188 Sum_probs=53.4
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHH-hcCCCCCcc-CCHHHHhhCCCCCEEEEeCCC
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLAN-AFDWPLKVF-PGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~-~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~~ 84 (376)
||.|||+|..|...+..|.+ .+.+|. ++|..+...... ..+.+ ..|+. .+ ..-.+.+. +.|+|+++.--
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~---~G~~V~-~sD~~~~~~~~~~~~~~~~~~gi~--~~~g~~~~~~~--~~d~vv~sp~i 72 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHK---KGAEVT-VTDLKPNEELEPSMGQLRLNEGSV--LHTGLHLEDLN--NADLVVKSPGI 72 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHH---CCCEEE-EEeCCCCccchhHHHHHhhccCcE--EEecCchHHhc--cCCEEEECCCC
Confidence 58999999999955555555 488866 588655421111 11222 34765 22 12244454 37877665543
Q ss_pred CccHHHHHHHHcCCCCCeEEEec
Q 017143 85 MTHYQILMDIINHPKPHHVLVEK 107 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EK 107 (376)
....+...+|.+ +|++|+.|-
T Consensus 73 ~~~~p~~~~a~~--~~i~i~~~~ 93 (433)
T TIGR01087 73 PPDHPLVQAAAK--RGIPVVGDI 93 (433)
T ss_pred CCCCHHHHHHHH--CCCcEEEHH
Confidence 333456777778 889988764
No 359
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.04 E-value=0.17 Score=42.07 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=41.1
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC--CHHHHhhCCCCCEEEEeCC
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--GHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~D~V~i~t~ 83 (376)
|||||||+ |..|+..+...... +-+++||+ |++.+....+.+.- ..- .+|+ +..+.|.. .|+|+-+-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R---GHeVTAiv-Rn~~K~~~~~~~~i-~q~--Difd~~~~a~~l~g--~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR---GHEVTAIV-RNASKLAARQGVTI-LQK--DIFDLTSLASDLAG--HDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC---CCeeEEEE-eChHhcccccccee-ecc--cccChhhhHhhhcC--CceEEEecc
Confidence 68999996 88888888776664 89999987 66653211111110 011 2333 22355544 799987654
No 360
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=94.03 E-value=2.1 Score=40.25 Aligned_cols=134 Identities=10% Similarity=0.138 Sum_probs=74.8
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--cCCHHHHhhC-CCCCEEEEeCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--FPGHQELLDS-GLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-~~~D~V~i~t~ 83 (376)
-++.|+|+|.+|...+...+.. +.+++++.+ +++ +...+.+++|.. .. +.+.+++.+. ..+|+|+-++.
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~---G~~vi~~~~-~~~---~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM---GHHVTVISS-SDK---KREEALEHLGAD-DYLVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC---CCeEEEEeC-CHH---HHHHHHHhcCCc-EEecCCChHHHHHhcCCCcEEEECCC
Confidence 4688999999999877665554 677776554 444 233444567764 22 1222222221 24899999988
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecC---CCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCce
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKP---LCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV 158 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP---~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i 158 (376)
...-...+.++++.+ |+-|.+=.+ ...+. .... .+ ++.+.-.+...+ ..+..+.+++.+|.+-.+
T Consensus 254 ~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~------~~~~-~~-~~~i~g~~~~~~-~~~~~~~~~~~~g~l~~~ 321 (357)
T PLN02514 254 VFHPLEPYLSLLKLD-GKLILMGVINTPLQFVT------PMLM-LG-RKVITGSFIGSM-KETEEMLEFCKEKGLTSM 321 (357)
T ss_pred chHHHHHHHHHhccC-CEEEEECCCCCCCcccH------HHHh-hC-CcEEEEEecCCH-HHHHHHHHHHHhCCCcCc
Confidence 655667778888753 666665332 22222 1222 22 333333322222 245667778878776443
No 361
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.01 E-value=0.33 Score=43.51 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=80.6
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhh----------------HHHHHHHHHh---cCCC--CCcc
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQS----------------RQQALKLANA---FDWP--LKVF 63 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~----------------~~~~~~~~~~---~~~~--~~~~ 63 (376)
...+|.|||+|.+|...+..|... ++.=+.++|.|.-. ..|++.++++ .+-. +..+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~---GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i 105 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART---GIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV 105 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc---CCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence 357899999999999999998886 54444466655210 0123233322 2211 1111
Q ss_pred ------CCHHHHhhCCCCCEEEEeCCC-CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec
Q 017143 64 ------PGHQELLDSGLCDVVVVSTPN-MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE 136 (376)
Q Consensus 64 ------~~~~~~l~~~~~D~V~i~t~~-~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~ 136 (376)
++.++++.. ++|+|+.|.-+ .....+...|.+ ++++++.--=.+ ... +-..+.+.--..
T Consensus 106 ~~~i~~e~~~~ll~~-~~D~VIdaiD~~~~k~~L~~~c~~--~~ip~I~~gGag----------~k~-dp~~~~~~di~~ 171 (268)
T PRK15116 106 DDFITPDNVAEYMSA-GFSYVIDAIDSVRPKAALIAYCRR--NKIPLVTTGGAG----------GQI-DPTQIQVVDLAK 171 (268)
T ss_pred ecccChhhHHHHhcC-CCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEECCcc----------cCC-CCCeEEEEeeec
Confidence 244556642 48999988876 455566667777 778877552111 112 223455666677
Q ss_pred cccCHHHHHHHHHHHc
Q 017143 137 YRYMPPVAKLIQIVKS 152 (376)
Q Consensus 137 ~r~~p~~~~~k~~i~~ 152 (376)
...+|..+.+|+.+++
T Consensus 172 t~~~pla~~~R~~lr~ 187 (268)
T PRK15116 172 TIQDPLAAKLRERLKS 187 (268)
T ss_pred ccCChHHHHHHHHHHH
Confidence 7789999999999986
No 362
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=93.96 E-value=0.25 Score=44.65 Aligned_cols=115 Identities=22% Similarity=0.136 Sum_probs=65.4
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC------CccCCHHHHhhCCCCCEE
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL------KVFPGHQELLDSGLCDVV 78 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~D~V 78 (376)
..-+|.|+|+|..|...++.|... ++.-+.++|.+.-. ...+.+++-+.. +. ....+-|.+-++++-
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLala---GVg~itI~D~d~ve---~snL~rqf~~~~~dIGk~Ka-ea~~~~L~eLNp~V~ 90 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILA---GVKSVTLHDTKPCS---WSDLSSQFYLREEDIGKNRA-EASQARLAELNPYVP 90 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHc---CCCeEEEEcCCccc---hhhcccCccCChHHhCHHHH-HHHHHHHHHHCCCCE
Confidence 457999999999999999998775 88888899987642 334444432210 10 112222332233332
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE 136 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~ 136 (376)
+-...... ..+.+.. .-.-|.|+ .+.+....+-++|++ +++++..+..
T Consensus 91 V~~~~~~~----~~~~l~~-fdvVV~~~----~~~~~~~~in~~c~~-~~ipfI~a~~ 138 (286)
T cd01491 91 VTVSTGPL----TTDELLK-FQVVVLTD----ASLEDQLKINEFCHS-PGIKFISADT 138 (286)
T ss_pred EEEEeccC----CHHHHhc-CCEEEEec----CCHHHHHHHHHHHHH-cCCEEEEEec
Confidence 22221111 1233431 22223332 377788888899954 5888888766
No 363
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.89 E-value=0.3 Score=51.28 Aligned_cols=90 Identities=21% Similarity=0.169 Sum_probs=57.3
Q ss_pred ceeEEEEeCChhhHHH-HHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGMGMMGREH-FINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~-~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~ 83 (376)
+.+|.|||+|..|... +..|.+ .+.+|+ ++|.++.. ...++ ++.|+. ++ ....+.+. ++|+|+++..
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~---~G~~V~-~sD~~~~~--~~~~L-~~~gi~--~~~g~~~~~~~--~~d~vV~Spg 72 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLD---RGYSVS-GSDLSEGK--TVEKL-KAKGAR--FFLGHQEEHVP--EDAVVVYSSS 72 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHH---CCCeEE-EECCCCCh--HHHHH-HHCCCE--EeCCCCHHHcC--CCCEEEECCC
Confidence 4469999999999887 444554 588876 58876543 23344 345765 32 22334454 3798877655
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecC
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKP 108 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP 108 (376)
-....+...+|.+ +|++|+-|-=
T Consensus 73 I~~~~p~~~~a~~--~gi~v~~~~e 95 (809)
T PRK14573 73 ISKDNVEYLSAKS--RGNRLVHRAE 95 (809)
T ss_pred cCCCCHHHHHHHH--CCCcEEeHHH
Confidence 4444456677888 8899887643
No 364
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=93.88 E-value=1.5 Score=38.73 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=87.9
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC-------ChhhHHHHHHHHHhcCCCCCccC----------CH-
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP-------HLQSRQQALKLANAFDWPLKVFP----------GH- 66 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~-------~~~~~~~~~~~~~~~~~~~~~~~----------~~- 66 (376)
+-.+++|-|.|.+|...+..|.+. +.++++|+|. +.-..+...+...+.+..+..|. +-
T Consensus 31 ~g~~v~IqGfG~VG~~~a~~l~~~---Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 107 (244)
T PF00208_consen 31 EGKRVAIQGFGNVGSHAARFLAEL---GAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND 107 (244)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHT---TEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence 458999999999999988888886 8999998654 33334455555555554112232 12
Q ss_pred HHHhhCCCCCEEEEeC-CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHH
Q 017143 67 QELLDSGLCDVVVVST-PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAK 145 (376)
Q Consensus 67 ~~~l~~~~~D~V~i~t-~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~ 145 (376)
++++.. ++|+.+-|. ++.-+.+.+...++ +|..++||--=.....++.+ .+. ++ |+.+...+-..-...+..
T Consensus 108 ~~il~~-~~DiliP~A~~~~I~~~~~~~~i~--~~akiIvegAN~p~t~~a~~--~L~-~r-GI~viPD~~aNaGGvi~s 180 (244)
T PF00208_consen 108 DEILSV-DCDILIPCALGNVINEDNAPSLIK--SGAKIIVEGANGPLTPEADE--ILR-ER-GILVIPDFLANAGGVIVS 180 (244)
T ss_dssp CHGGTS-SSSEEEEESSSTSBSCHHHCHCHH--TT-SEEEESSSSSBSHHHHH--HHH-HT-T-EEE-HHHHTTHHHHHH
T ss_pred cccccc-cccEEEEcCCCCeeCHHHHHHHHh--ccCcEEEeCcchhccHHHHH--HHH-HC-CCEEEcchhhcCCCeEee
Confidence 267765 599999887 45688888887888 77889999744444466665 333 55 877776665555444444
Q ss_pred HHHHHH
Q 017143 146 LIQIVK 151 (376)
Q Consensus 146 ~k~~i~ 151 (376)
..++++
T Consensus 181 ~~E~~~ 186 (244)
T PF00208_consen 181 YFEWLQ 186 (244)
T ss_dssp HHHHHH
T ss_pred hhhhcc
Confidence 444443
No 365
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.87 E-value=0.36 Score=44.66 Aligned_cols=100 Identities=17% Similarity=0.114 Sum_probs=61.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC--ChhhHHHHHHHHHhcC-C---CCC---------------cc--
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP--HLQSRQQALKLANAFD-W---PLK---------------VF-- 63 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~--~~~~~~~~~~~~~~~~-~---~~~---------------~~-- 63 (376)
+||||-|.|+||+..++++... +++++++|-|+ +.+...-..+.=.-+| + ++. ++
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~ 80 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAK 80 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEec
Confidence 7999999999999988886654 78999999984 4442222211111111 1 110 11
Q ss_pred CCHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143 64 PGHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL 109 (376)
Q Consensus 64 ~~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~ 109 (376)
.+.+++-. +.++|+|+-||......+-+..-+.+|+ +-|++--|.
T Consensus 81 ~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Ga-kkviisaps 126 (342)
T PTZ00353 81 HDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGA-KGVFVAGQS 126 (342)
T ss_pred CCcccCcccccCCCEEEEcccccccHhhhhhhhhcCC-CcEEEeCCC
Confidence 11222211 1269999999998877777777777443 556665563
No 366
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.84 E-value=0.17 Score=41.58 Aligned_cols=128 Identities=12% Similarity=0.072 Sum_probs=69.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH-HhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE-LLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~D~V~i~t~~ 84 (376)
--+|.|||.|.+|..-+..|... +.+++-| +++. .+++.+.-.+. ..-..+++ -+ .+.|+|+.+|.+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~---ga~V~VI-sp~~-----~~~l~~l~~i~-~~~~~~~~~dl--~~a~lViaaT~d 80 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT---GAFVTVV-SPEI-----CKEMKELPYIT-WKQKTFSNDDI--KDAHLIYAATNQ 80 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEE-cCcc-----CHHHHhccCcE-EEecccChhcC--CCceEEEECCCC
Confidence 36899999999999888877774 6777744 4432 22222211111 01112221 12 347999999988
Q ss_pred CccHHHHHHHHcCCCCCeE-EEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143 85 MTHYQILMDIINHPKPHHV-LVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS 152 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~V-l~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 152 (376)
..--..+.++.+ ++..| .+..|- .+.-..-+.-+++++.+.+.-+-.--...+.+|+.|++
T Consensus 81 ~e~N~~i~~~a~--~~~~vn~~d~~~-----~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 81 HAVNMMVKQAAH--DFQWVNVVSDGT-----ESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred HHHHHHHHHHHH--HCCcEEECCCCC-----cCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence 654444444445 33222 223332 22222222225567777777666544466777777764
No 367
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.82 E-value=0.42 Score=46.54 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=48.4
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCcc---CCHHHHhhC--CCCCEEE
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVF---PGHQELLDS--GLCDVVV 79 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~l~~--~~~D~V~ 79 (376)
+.++.|+|+|.+|...+..|.+. +.+++ +.|.+++ +.+++.+++ ++. ..+ .+.+.+.+. .+.|+|+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~---~~~v~-vid~~~~---~~~~~~~~~~~~~-~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE---GYSVK-LIERDPE---RAEELAEELPNTL-VLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCeEE-EEECCHH---HHHHHHHHCCCCe-EEECCCCCHHHHHhcCCccCCEEE
Confidence 57899999999999988887764 77765 5688887 444555443 433 122 233333222 3689999
Q ss_pred EeCCCCc
Q 017143 80 VSTPNMT 86 (376)
Q Consensus 80 i~t~~~~ 86 (376)
+++++..
T Consensus 303 ~~~~~~~ 309 (453)
T PRK09496 303 ALTNDDE 309 (453)
T ss_pred ECCCCcH
Confidence 9998753
No 368
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=93.82 E-value=0.28 Score=47.61 Aligned_cols=87 Identities=16% Similarity=0.084 Sum_probs=56.2
Q ss_pred eeEEEEeCChhhHHHHHHhh-hhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC---HHHHhhCCCCCEEEEeC
Q 017143 7 VKYGIIGMGMMGREHFINLH-HLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG---HQELLDSGLCDVVVVST 82 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~D~V~i~t 82 (376)
-|+.|||+|..|... ..+. +....+++++|+++.+++. . .-.|++ ++.+ +.+++++.++|-|+|+.
T Consensus 125 rrvLIIGag~~~~~L-~~l~~~~~~~g~~vVGfi~~dd~~---~----~i~gvp--VlG~~~dl~~~v~~~~Id~ViIAl 194 (442)
T TIGR03013 125 RRILVLGTGPRAREI-ARLRRSSDRRGHEIVGFVPLPDEP---A----YVPSEH--VIENGDGLVEYVLRHRIDEIVIAL 194 (442)
T ss_pred CcEEEEECCHHHHHH-HHHHHhCccCCeEEEEEEcCCccc---c----ccCCCc--ccCCHHHHHHHHHhCCCCEEEEEC
Confidence 579999999988876 4443 3333589999999654332 1 223555 5554 55667777899999999
Q ss_pred CCCccH---HHHHHHHcCCCCCeEEE
Q 017143 83 PNMTHY---QILMDIINHPKPHHVLV 105 (376)
Q Consensus 83 ~~~~h~---~~~~~al~~~~g~~Vl~ 105 (376)
|...+. +.+..|-+ .|.+|..
T Consensus 195 p~~~~~~~~~~l~~~~~--~gv~V~i 218 (442)
T TIGR03013 195 DERRGSLPVDELLECKL--SGIEVVD 218 (442)
T ss_pred chhhcchHHHHHHHHHh--CCCEEEE
Confidence 865442 23444444 5666654
No 369
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.79 E-value=0.28 Score=48.74 Aligned_cols=127 Identities=15% Similarity=0.155 Sum_probs=73.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
-++.|+|+|.+|+..+..|... +++|+ +++++.+ ++++++++++.....+.+..+.+.. +.|+|+-+||...
T Consensus 380 k~vlIlGaGGagrAia~~L~~~---G~~V~-i~nR~~e---~a~~la~~l~~~~~~~~~~~~~~~~-~~diiINtT~vGm 451 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEK---GARVV-IANRTYE---RAKELADAVGGQALTLADLENFHPE-EGMILANTTSVGM 451 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCEEE-EEcCCHH---HHHHHHHHhCCceeeHhHhhhhccc-cCeEEEecccCCC
Confidence 4789999999999888888876 56755 7899877 6677777665321223333333322 3688888888665
Q ss_pred cH-----HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143 87 HY-----QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ 148 (376)
Q Consensus 87 h~-----~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~ 148 (376)
+. .+-...++ . ..+.++- .-++.+ -.|++.|+++ |..+.-|.......+....+-
T Consensus 452 ~~~~~~~pl~~~~l~--~-~~~v~D~--vY~P~~-T~ll~~A~~~-G~~~~~Gl~MLv~Qa~~~f~l 511 (529)
T PLN02520 452 QPNVDETPISKHALK--H-YSLVFDA--VYTPKI-TRLLREAEES-GAIIVSGTEMFIRQAYEQFER 511 (529)
T ss_pred CCCCCCCcccHhhCC--C-CCEEEEe--ccCCCc-CHHHHHHHHC-CCeEeCcHHHHHHHHHHHHHH
Confidence 42 12223344 2 3344442 112222 2366666344 777777766555444444433
No 370
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=93.71 E-value=0.23 Score=42.20 Aligned_cols=79 Identities=22% Similarity=0.184 Sum_probs=51.8
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEeCCCC-
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVSTPNM- 85 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~t~~~- 85 (376)
++.|+|+|..|+..+..|.+ .++++++++|.++... -+. -.|+| .+.+.+++... .+.+.++++.+..
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~---~g~~vvgfid~~~~~~--~~~---i~g~p--vlg~~~~l~~~~~~~~~~iiai~~~~ 70 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAED---SGWEIVGFLDDNPALQ--GTS---VDGLP--VLGGDEDLLRYPPDEVDLVVAIGDNK 70 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHh---CCCEEEEEEcCCcccc--Ccc---cCCcc--EECCHHHHhhhcccccEEEEEcCCHH
Confidence 47899999999998888765 4899999999775421 111 23665 66666655432 2468888888653
Q ss_pred ccHHHHHHHHc
Q 017143 86 THYQILMDIIN 96 (376)
Q Consensus 86 ~h~~~~~~al~ 96 (376)
.+.++...+.+
T Consensus 71 ~~~~i~~~l~~ 81 (201)
T TIGR03570 71 LRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHh
Confidence 34444444444
No 371
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.70 E-value=0.38 Score=46.87 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=54.9
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEE
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i 80 (376)
|.+...-||+|+|+|..|...+..|. . +.+++ |+|..+.......++. ... .......+.+. ++|+|++
T Consensus 1 ~~~~~~~~v~v~G~G~sG~a~~~~L~-~---g~~v~-v~D~~~~~~~~~~~~~---~~~-~~~~~~~~~~~--~~d~vV~ 69 (454)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQ-N---KYDVI-VYDDLKANRDIFEELY---SKN-AIAALSDSRWQ--NLDKIVL 69 (454)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHh-C---CCEEE-EECCCCCchHHHHhhh---cCc-eeccCChhHhh--CCCEEEE
Confidence 55555568999999999988777665 2 56755 6885443221222211 111 01122234454 3787766
Q ss_pred eCCCCccHHHHHHHHcCCCCCeEEEec
Q 017143 81 STPNMTHYQILMDIINHPKPHHVLVEK 107 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~Vl~EK 107 (376)
...-....+.+.+|.+ +|++|+.|-
T Consensus 70 SPgI~~~~p~~~~a~~--~gi~v~~e~ 94 (454)
T PRK01368 70 SPGIPLTHEIVKIAKN--FNIPITSDI 94 (454)
T ss_pred CCCCCCCCHHHHHHHH--CCCceecHH
Confidence 5544445567778888 888887653
No 372
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.65 E-value=0.43 Score=36.64 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=58.6
Q ss_pred EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC---CHHHHhhC--CCCCEEEEeCC
Q 017143 9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP---GHQELLDS--GLCDVVVVSTP 83 (376)
Q Consensus 9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~--~~~D~V~i~t~ 83 (376)
|.|+|+|.+|...+..|.+. +.+++ +.|.+++ ..+++.++ +++ -.+. +.+.+-+. .+.+.|+++++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~---~~~vv-vid~d~~---~~~~~~~~-~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG---GIDVV-VIDRDPE---RVEELREE-GVE-VIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT---TSEEE-EEESSHH---HHHHHHHT-TSE-EEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC---CCEEE-EEECCcH---HHHHHHhc-ccc-cccccchhhhHHhhcCccccCEEEEccC
Confidence 57999999999999888884 56666 5688887 44454433 444 2222 33333321 35899999999
Q ss_pred CCccHHHHHHHHcC-CCCCeEEEecCCCCCHHHHHHHH
Q 017143 84 NMTHYQILMDIINH-PKPHHVLVEKPLCTTVADCKKVV 120 (376)
Q Consensus 84 ~~~h~~~~~~al~~-~~g~~Vl~EKP~a~~~~e~~~l~ 120 (376)
+..---.+...++. +...+|++. +.+.+..+.|.
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~---~~~~~~~~~l~ 106 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIAR---VNDPENAELLR 106 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEE---ESSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE---ECCHHHHHHHH
Confidence 86443333333331 134566654 33555544443
No 373
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=93.61 E-value=0.29 Score=45.80 Aligned_cols=146 Identities=12% Similarity=0.151 Sum_probs=86.8
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhc-CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH--HhhCCCCCEEEEeC
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLR-SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE--LLDSGLCDVVVVST 82 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~-~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~D~V~i~t 82 (376)
++|||||+ |..|+..+..|...+ =+..++..+.+..... +...+. +.. ....+.++ .+ .++|+|+.|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g--~~~~f~---~~~-~~v~~~~~~~~~--~~vDivffa~ 72 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQ--AAPSFG---GTT-GTLQDAFDIDAL--KALDIIITCQ 72 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCC--CcCCCC---CCc-ceEEcCcccccc--cCCCEEEEcC
Confidence 47999995 989999999888552 1334445444432210 111110 111 11122222 23 3499999999
Q ss_pred CCCccHHHHHHHHcCCCCCe-EEEec----------CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHH
Q 017143 83 PNMTHYQILMDIINHPKPHH-VLVEK----------PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVK 151 (376)
Q Consensus 83 ~~~~h~~~~~~al~~~~g~~-Vl~EK----------P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~ 151 (376)
+.....+++.++.+ +|.. +.++. |+-...--...|.. . .+.|++-..+.|+--...+..++.+.+
T Consensus 73 g~~~s~~~~p~~~~--aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~-~-~~~gi~~ianPNCst~~l~~aL~pL~~ 148 (366)
T TIGR01745 73 GGDYTNEIYPKLRE--SGWQGYWIDAASSLRMKDDAVIILDPVNQDVITD-G-LNNGIRTFVGGNCTVSLMLMSLGGLFA 148 (366)
T ss_pred CHHHHHHHHHHHHh--CCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHh-H-HhCCcCeEECcCHHHHHHHHHHHHHHh
Confidence 99999999999999 8863 44543 33221111122333 2 223654356788888888888999988
Q ss_pred cCCCCceEEEEEe
Q 017143 152 SGSIGQVKMVAIR 164 (376)
Q Consensus 152 ~g~iG~i~~~~~~ 164 (376)
...|-++.....+
T Consensus 149 ~~~i~~v~VsTyQ 161 (366)
T TIGR01745 149 NDLVEWVSVATYQ 161 (366)
T ss_pred ccCccEEEEEech
Confidence 7777777666553
No 374
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.57 E-value=0.46 Score=46.38 Aligned_cols=86 Identities=19% Similarity=0.075 Sum_probs=52.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC-CC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP-NM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~-~~ 85 (376)
.||.|||+|..|...+..|.+. +.+|. ++|..+... .++ ++.|+. .+..-.+-+. ++|+|+++.. +.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~---G~~v~-~~D~~~~~~---~~l-~~~g~~--~~~~~~~~~~--~~d~vv~sp~i~~ 77 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG---GAEVI-AWDDNPASR---AKA-AAAGIT--TADLRTADWS--GFAALVLSPGVPL 77 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC---CCEEE-EECCChhhH---HHH-HhcCcc--ccCCChhHHc--CCCEEEECCCCCc
Confidence 4899999999998765556554 77755 588664422 223 245765 3221122333 4797766442 22
Q ss_pred ccH---HHHHHHHcCCCCCeEEEe
Q 017143 86 THY---QILMDIINHPKPHHVLVE 106 (376)
Q Consensus 86 ~h~---~~~~~al~~~~g~~Vl~E 106 (376)
.|. ..+..|.+ +|++|+-+
T Consensus 78 ~~~~~~~~v~~a~~--~gi~i~~~ 99 (460)
T PRK01390 78 THPKPHWVVDLARA--AGVEVIGD 99 (460)
T ss_pred cCCcccHHHHHHHH--cCCcEEeH
Confidence 332 46778888 78888764
No 375
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=0.39 Score=43.70 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=95.3
Q ss_pred CCCCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-----CHHHHhhCCC
Q 017143 1 MAANDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-----GHQELLDSGL 74 (376)
Q Consensus 1 m~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~ 74 (376)
|++....-+.|.|+ |+.|...+..++.. +.+. ++..|+.. +...+.+++|.....|. ..+++++.
T Consensus 1 ~~~e~e~d~iiYGAtGy~G~lvae~l~~~---g~~~-aLAgRs~~---kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~-- 71 (382)
T COG3268 1 MPMEREYDIIIYGATGYAGGLVAEYLARE---GLTA-ALAGRSSA---KLDALRASLGPEAAVFPLGVPAALEAMASR-- 71 (382)
T ss_pred CCCCcceeEEEEccccchhHHHHHHHHHc---CCch-hhccCCHH---HHHHHHHhcCccccccCCCCHHHHHHHHhc--
Confidence 66666788999996 77888777777664 4444 78899988 56677777776544443 35677766
Q ss_pred CCEEEEeCCCCcc--HHHHHHHHcCCCCCeEEE---ecCCCCCHHHHHHH-HHHHHhCCCeEEEEeeccccCHH---HHH
Q 017143 75 CDVVVVSTPNMTH--YQILMDIINHPKPHHVLV---EKPLCTTVADCKKV-VDAARKRPDILVQVGLEYRYMPP---VAK 145 (376)
Q Consensus 75 ~D~V~i~t~~~~h--~~~~~~al~~~~g~~Vl~---EKP~a~~~~e~~~l-~~~a~~~~~~~~~v~~~~r~~p~---~~~ 145 (376)
.++|+-|.-|..| .+++..|++ +|.|-+= |-++. +.+..+ -+.| ++.|+.+..++-+---|. +..
T Consensus 72 ~~VVlncvGPyt~~g~plv~aC~~--~GTdY~DiTGEi~~f---e~~i~~yh~~A-~~~Ga~Ii~~cGFDsIPsDl~v~~ 145 (382)
T COG3268 72 TQVVLNCVGPYTRYGEPLVAACAA--AGTDYADITGEIMFF---ENSIDLYHAQA-ADAGARIIPGCGFDSIPSDLGVYA 145 (382)
T ss_pred ceEEEeccccccccccHHHHHHHH--hCCCeeeccccHHHH---HHHHHHHHHHH-HhcCCEEeccCCCCcCccchHHHH
Confidence 8999999999766 466777888 7877431 44433 223334 3345 445877776655554442 445
Q ss_pred HHHHHHcCCCCceEEEEE
Q 017143 146 LIQIVKSGSIGQVKMVAI 163 (376)
Q Consensus 146 ~k~~i~~g~iG~i~~~~~ 163 (376)
+++......+|++...+.
T Consensus 146 l~~~~~~d~~~~~~~t~l 163 (382)
T COG3268 146 LLKQALPDGTEELIATHL 163 (382)
T ss_pred HHHhhCcccccchhhhhe
Confidence 555554455677654443
No 376
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.55 E-value=2.3 Score=39.71 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=75.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-------CHHHHhhC----CCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-------GHQELLDS----GLC 75 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~----~~~ 75 (376)
-+|.|+|+|.+|...+...+.. +.++++ .++++++++. ++++|.. .+++ ++.+.+.+ ..+
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~---G~~vi~-~~~~~~~~~~----~~~~Ga~-~~i~~~~~~~~~~~~~~~~~t~~~g~ 238 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAM---GAAVVA-IDIDPEKLEM----MKGFGAD-LTLNPKDKSAREVKKLIKAFAKARGL 238 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEE-EcCCHHHHHH----HHHhCCc-eEecCccccHHHHHHHHHhhcccCCC
Confidence 4799999999999877666665 667664 5777775443 3455654 2221 12222221 123
Q ss_pred ----CEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCC---CCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHH
Q 017143 76 ----DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL---CTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQ 148 (376)
Q Consensus 76 ----D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~---a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~ 148 (376)
|+|+.++........+.++++.+ |+-|++--+. ..+. .... .+ +..+.-.+... ...+..+-+
T Consensus 239 d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~------~~~~-~~-~~~~~g~~~~~-~~~~~~~~~ 308 (349)
T TIGR03201 239 RSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMAKTEYRL------SNLM-AF-HARALGNWGCP-PDRYPAALD 308 (349)
T ss_pred CCCcCEEEECCCChHHHHHHHHHHhcC-CeEEEECcCCCCcccCH------HHHh-hc-ccEEEEEecCC-HHHHHHHHH
Confidence 47888988777777888889753 7666664432 2222 2222 22 22332222111 235677788
Q ss_pred HHHcCCCC
Q 017143 149 IVKSGSIG 156 (376)
Q Consensus 149 ~i~~g~iG 156 (376)
++++|.|-
T Consensus 309 ~i~~g~i~ 316 (349)
T TIGR03201 309 LVLDGKIQ 316 (349)
T ss_pred HHHcCCCC
Confidence 88888773
No 377
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.52 E-value=2.2 Score=37.92 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=62.7
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCC----------ChhhHHHHHHHHHhcC--CC--C-----CccCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADP----------HLQSRQQALKLANAFD--WP--L-----KVFPG 65 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~~~~~~~~--~~--~-----~~~~~ 65 (376)
+..||+|-|.|.+|...+..|.+. +.+|++|+|. |.+.+....+...+.+ +. . ..+-+
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~---GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~ 113 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLEL---GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE 113 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence 347999999999999887777764 8999999993 2222211111111111 00 0 01124
Q ss_pred HHHHhhCCCCCEEEEeCC-CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143 66 HQELLDSGLCDVVVVSTP-NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120 (376)
Q Consensus 66 ~~~~l~~~~~D~V~i~t~-~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~ 120 (376)
-++++.. ++|+.+=|.- +.-+.+-+.+..+ .+..+++|--=.....++.+++
T Consensus 114 ~~~~~~~-~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~t~~a~~~L 166 (254)
T cd05313 114 GKKPWEV-PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPCTAEAIEVF 166 (254)
T ss_pred CcchhcC-CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCCCHHHHHHH
Confidence 5566665 4887776544 3466666666655 4556777753322223555443
No 378
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.44 E-value=0.37 Score=47.20 Aligned_cols=90 Identities=16% Similarity=0.034 Sum_probs=55.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh-hHHHHHHHHHhcCCCCCcc-CCHHHHhhCCCCCEEEEeCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ-SRQQALKLANAFDWPLKVF-PGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~D~V~i~t~~ 84 (376)
-||+|+|+|..|...+..|.+. +.+++ ++|.++. ......++.+ ++. ..+ ..-.+.+. ++|+|+++..-
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~---g~~v~-~~d~~~~~~~~~~~~l~~--~~~-~~~~~~~~~~~~--~~d~vV~SpgI 79 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH---LPAQA-LTLFCNAVEAREVGALAD--AAL-LVETEASAQRLA--AFDVVVKSPGI 79 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc---CCEEE-EEcCCCcccchHHHHHhh--cCE-EEeCCCChHHcc--CCCEEEECCCC
Confidence 4899999999999888877775 78866 5775432 2122233432 222 122 22234554 38987665544
Q ss_pred CccHHHHHHHHcCCCCCeEEEec
Q 017143 85 MTHYQILMDIINHPKPHHVLVEK 107 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EK 107 (376)
....+...+|.+ +|++|+.|-
T Consensus 80 ~~~~p~~~~a~~--~~i~i~~~~ 100 (468)
T PRK04690 80 SPYRPEALAAAA--RGTPFIGGT 100 (468)
T ss_pred CCCCHHHHHHHH--cCCcEEEHH
Confidence 444567778888 889988653
No 379
>PRK14852 hypothetical protein; Provisional
Probab=93.37 E-value=0.6 Score=49.08 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=59.2
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-------------------hhHHHHHHHHHhcCC--CCCcc
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-------------------QSRQQALKLANAFDW--PLKVF 63 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-------------------~~~~~~~~~~~~~~~--~~~~~ 63 (376)
+.-||+|||+|..|..++..|... ++.-+.++|.|. .+.+.+++..++.+- .+..+
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAra---GVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLART---GIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHc---CCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 357999999999999999998886 444455555532 122222333333331 12222
Q ss_pred ------CCHHHHhhCCCCCEEEEeCCCC---ccHHHHHHHHcCCCCCeEEEecC
Q 017143 64 ------PGHQELLDSGLCDVVVVSTPNM---THYQILMDIINHPKPHHVLVEKP 108 (376)
Q Consensus 64 ------~~~~~~l~~~~~D~V~i~t~~~---~h~~~~~~al~~~~g~~Vl~EKP 108 (376)
++.+++++. +|+|+-|+.+. ....+...|.+ .|++++..-+
T Consensus 408 ~~~I~~en~~~fl~~--~DiVVDa~D~~~~~~rr~l~~~c~~--~~IP~I~ag~ 457 (989)
T PRK14852 408 PEGVAAETIDAFLKD--VDLLVDGIDFFALDIRRRLFNRALE--LGIPVITAGP 457 (989)
T ss_pred ecCCCHHHHHHHhhC--CCEEEECCCCccHHHHHHHHHHHHH--cCCCEEEeec
Confidence 346667754 88888887652 23455556777 7788776554
No 380
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.35 E-value=0.25 Score=44.38 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=44.3
Q ss_pred EEEEeC-ChhhHHHHHHhhhhcCC--CcEEEEEeCCChhhHHHHH----HHHHhc-CCCCCccCCHHHHhhCCCCCEEEE
Q 017143 9 YGIIGM-GMMGREHFINLHHLRSQ--GVSVVCIADPHLQSRQQAL----KLANAF-DWPLKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 9 v~iiG~-G~~g~~~~~~~~~~~~~--~~~~~~v~d~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~l~~~~~D~V~i 80 (376)
|+|||+ |.+|...+..+... + ...-+.++|+++++++... ..+..+ ...+...+|..+.+++ .|+|++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~--~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~--aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG--SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD--ADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC--CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--CCEEEE
Confidence 689999 98998887777765 3 2233557899886543221 122222 2223445676677766 899999
Q ss_pred eCC
Q 017143 81 STP 83 (376)
Q Consensus 81 ~t~ 83 (376)
+.-
T Consensus 77 t~~ 79 (263)
T cd00650 77 TAG 79 (263)
T ss_pred CCC
Confidence 663
No 381
>PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=93.26 E-value=1.1 Score=43.47 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=70.9
Q ss_pred CceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhHH---HHHHHHHhc-C--------------CC
Q 017143 5 DTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSRQ---QALKLANAF-D--------------WP 59 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~~---~~~~~~~~~-~--------------~~ 59 (376)
.+.-+.|+|+ |-.++ ..+|+|.++. ++++.|+|+.-++-+..+ ...+..+++ + +.
T Consensus 10 ~~~~~VIFGAtGDLa~RKL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~fr~~v~~~l~~~~~~~~~~~~~~~F~~~~~ 89 (484)
T PRK12854 10 PPTVFVLFGATGDLAKRKLLPGLFHLARAGLLPPDWRIVGTGRGDVSAEAFREHARDALDEFGARKLDDGEWARFAKRLR 89 (484)
T ss_pred CCeEEEEeCCchHHhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhccCccCHHHHHHHHhcCE
Confidence 4688899995 66665 5788876662 368999998754322111 111111111 0 00
Q ss_pred --CCccCC-----HHHHhhCC-------CCCEEEEeCCCCccHHHHHHHHcCC--CCCeEEEecCCCCCHHHHHHHHHHH
Q 017143 60 --LKVFPG-----HQELLDSG-------LCDVVVVSTPNMTHYQILMDIINHP--KPHHVLVEKPLCTTVADCKKVVDAA 123 (376)
Q Consensus 60 --~~~~~~-----~~~~l~~~-------~~D~V~i~t~~~~h~~~~~~al~~~--~g~~Vl~EKP~a~~~~e~~~l~~~a 123 (376)
..-|++ +.+.++.. .--+.++++||+.-..++...-+.| ...-|.+|||++.+.+.|++|-+..
T Consensus 90 Y~~~d~~~~~~~~L~~~l~~~~~~~~~~~n~ifYLA~PP~~f~~i~~~l~~~~l~~~~RiViEKPFG~Dl~SA~~Ln~~l 169 (484)
T PRK12854 90 YVPGGFLSAGPGALAAAVAAARAELGGDARLVHYLAVPPSAFLDVTRALGEAGLAEGSRVVMEKPFGTDLASAEALNAAV 169 (484)
T ss_pred EEecCCCChHHHHHHHHHHHHhhhcCCCCceEEEEecCHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 001222 22333321 1237899999988666665544421 1357999999999999999999877
Q ss_pred H
Q 017143 124 R 124 (376)
Q Consensus 124 ~ 124 (376)
.
T Consensus 170 ~ 170 (484)
T PRK12854 170 H 170 (484)
T ss_pred H
Confidence 3
No 382
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.26 E-value=0.44 Score=35.94 Aligned_cols=84 Identities=19% Similarity=0.122 Sum_probs=52.2
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
+..+|.|||.|..|..-+..|.+. +.+++-+.... + ..+ . .+. ..-..+++.+.. .|+|+++|++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~---gA~v~vis~~~-~---~~~---~--~i~-~~~~~~~~~l~~--~~lV~~at~d 70 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA---GAKVTVISPEI-E---FSE---G--LIQ-LIRREFEEDLDG--ADLVFAATDD 70 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC---TBEEEEEESSE-H---HHH---T--SCE-EEESS-GGGCTT--ESEEEE-SS-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC---CCEEEEECCch-h---hhh---h--HHH-HHhhhHHHHHhh--heEEEecCCC
Confidence 457999999999999888887775 78888655432 1 122 1 121 111334445544 8999999987
Q ss_pred C-ccHHHHHHHHcCCCCCeEEE
Q 017143 85 M-THYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 85 ~-~h~~~~~~al~~~~g~~Vl~ 105 (376)
. ....+...|-+ +|+.|-+
T Consensus 71 ~~~n~~i~~~a~~--~~i~vn~ 90 (103)
T PF13241_consen 71 PELNEAIYADARA--RGILVNV 90 (103)
T ss_dssp HHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHhh--CCEEEEE
Confidence 4 56666666766 7777765
No 383
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.19 E-value=0.57 Score=45.57 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=57.9
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCcc-CCH-HHHhhCCCCCE
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVF-PGH-QELLDSGLCDV 77 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~l~~~~~D~ 77 (376)
|... ..+|.|+|.|..|...+..|++. +.++++ +|..+... ...++.+. .|+. .+ ... ++.+. ++|+
T Consensus 1 ~~~~-~~~~~v~G~g~~G~~~a~~l~~~---g~~v~~-~d~~~~~~-~~~~l~~~~~gi~--~~~g~~~~~~~~--~~d~ 70 (445)
T PRK04308 1 MTFQ-NKKILVAGLGGTGISMIAYLRKN---GAEVAA-YDAELKPE-RVAQIGKMFDGLV--FYTGRLKDALDN--GFDI 70 (445)
T ss_pred CCCC-CCEEEEECCCHHHHHHHHHHHHC---CCEEEE-EeCCCCch-hHHHHhhccCCcE--EEeCCCCHHHHh--CCCE
Confidence 5433 35899999999998876666664 788774 56554421 12223221 3554 22 222 23333 4899
Q ss_pred EEEeCCCCccHHHHHHHHcCCCCCeEEEec
Q 017143 78 VVVSTPNMTHYQILMDIINHPKPHHVLVEK 107 (376)
Q Consensus 78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~EK 107 (376)
|+++.--....+...+|.+ +|.+|+-|-
T Consensus 71 vv~spgi~~~~p~~~~a~~--~~i~v~~~~ 98 (445)
T PRK04308 71 LALSPGISERQPDIEAFKQ--NGGRVLGDI 98 (445)
T ss_pred EEECCCCCCCCHHHHHHHH--cCCcEEEhH
Confidence 8887765555577888888 889987543
No 384
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.19 E-value=0.48 Score=45.98 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=55.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCC-cEEEEEeCCChhhHHHHHHHHHhcCCCCCcc-CC-HHHHhhCCCCCEEEEeCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQG-VSVVCIADPHLQSRQQALKLANAFDWPLKVF-PG-HQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~-~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~D~V~i~t~ 83 (376)
.||.|||+|..|..-+..+.+. .+ ++|+ ++|..+... ..+++. + |+. .+ .. -.+.+. ++|+|+++.-
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~--~~~~~v~-~~D~~~~~~-~~~~l~-~-g~~--~~~g~~~~~~~~--~~d~vV~Spg 77 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKY--QPQLTVK-VIDTRETPP-GQEQLP-E-DVE--LHSGGWNLEWLL--EADLVVTNPG 77 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhc--CCCCeEE-EEeCCCCch-hHHHhh-c-CCE--EEeCCCChHHhc--cCCEEEECCC
Confidence 5799999999999888777776 44 7766 588655321 122342 3 655 32 21 223343 3897766554
Q ss_pred CCccHHHHHHHHcCCCCCeEEEec
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEK 107 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EK 107 (376)
-....+...+|.+ +|++|+.|-
T Consensus 78 I~~~~p~~~~a~~--~gi~i~~~~ 99 (438)
T PRK04663 78 IALATPEIQQVLA--AGIPVVGDI 99 (438)
T ss_pred CCCCCHHHHHHHH--CCCcEEEHH
Confidence 4444466777888 889987543
No 385
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=93.18 E-value=0.25 Score=47.82 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=51.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHH---hhCCCCCEEEEe
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQEL---LDSGLCDVVVVS 81 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---l~~~~~D~V~i~ 81 (376)
++||.|||.|.........+++. +.++.++...... -...++..+ .+ -..|++++ .+..++|+|++.
T Consensus 2 ~~kVLvlG~G~re~al~~~l~~~---g~~v~~~~~~~Np---g~~~~a~~~~~~---~~~d~e~l~~~~~~~~id~Vi~~ 72 (435)
T PRK06395 2 TMKVMLVGSGGREDAIARAIKRS---GAILFSVIGHENP---SIKKLSKKYLFY---DEKDYDLIEDFALKNNVDIVFVG 72 (435)
T ss_pred ceEEEEECCcHHHHHHHHHHHhC---CCeEEEEECCCCh---hhhhcccceeec---CCCCHHHHHHHHHHhCCCEEEEC
Confidence 47999999997655555566665 4677766442221 122233222 12 12455554 445679999986
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEe
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~E 106 (376)
.-...-..++.+..+ .|.+|+.-
T Consensus 73 ~d~~l~~~~~~~l~~--~Gi~v~gp 95 (435)
T PRK06395 73 PDPVLATPLVNNLLK--RGIKVASP 95 (435)
T ss_pred CChHHHHHHHHHHHH--CCCcEECC
Confidence 443344444445566 68888753
No 386
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=93.05 E-value=0.86 Score=42.14 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCC--CCccCC-HHHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHH
Q 017143 46 RQQALKLANAFDWP--LKVFPG-HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122 (376)
Q Consensus 46 ~~~~~~~~~~~~~~--~~~~~~-~~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~ 122 (376)
.....+.++++|++ ...|+. --+++++.++|+.=|++.+-.+.+++..+.+ .||+|++-..++ +.+|..+.++.
T Consensus 78 ~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~--~gkPvilStGma-tl~Ei~~Av~~ 154 (329)
T TIGR03569 78 HRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIAR--FGKPVILSTGMA-TLEEIEAAVGV 154 (329)
T ss_pred HHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCcEEEECCCC-CHHHHHHHHHH
Confidence 34566778889988 233332 2266777679999999999999999999999 899999999995 99999999999
Q ss_pred HHhC
Q 017143 123 ARKR 126 (376)
Q Consensus 123 a~~~ 126 (376)
.++.
T Consensus 155 i~~~ 158 (329)
T TIGR03569 155 LRDA 158 (329)
T ss_pred HHHc
Confidence 9554
No 387
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=93.01 E-value=0.73 Score=39.75 Aligned_cols=123 Identities=20% Similarity=0.115 Sum_probs=85.3
Q ss_pred ceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCC
Q 017143 6 TVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 6 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~ 84 (376)
.-||.+=| +|.-|..|.....+. +.++|+-+.+... - ...+|.| +|.+..|+.++..+|+-+|..|+
T Consensus 38 ~TkVi~QGfTGKqgTFHs~q~~eY---gTk~VgG~~pkK~-----G--t~HLG~P--VF~sV~eA~~~t~a~AsvIyVPp 105 (329)
T KOG1255|consen 38 DTKVICQGFTGKQGTFHSQQALEY---GTKVVGGVNPKKG-----G--TTHLGLP--VFNSVAEAKKETGADASVIYVPP 105 (329)
T ss_pred CceEEEecccCCccceeHHHHHHh---CCceeeccCCCcC-----c--ccccCch--hhhhHHHHHHhhCCCceEEEeCC
Confidence 35777777 477777888777776 7888887765443 1 1246887 99999999999899999999999
Q ss_pred CccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC-CCeEEEEeeccccCHH
Q 017143 85 MTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR-PDILVQVGLEYRYMPP 142 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~-~~~~~~v~~~~r~~p~ 142 (376)
..-..-+.+|++ +-.+.++---=.....+..++......+ ..+.+-.++.---+|.
T Consensus 106 p~Aa~aI~eaie--aEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~ 162 (329)
T KOG1255|consen 106 PFAAAAIEEAIE--AEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPG 162 (329)
T ss_pred hhHHHHHHHHHh--ccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCcc
Confidence 999999999999 6677665443344555555555554332 1334444444444554
No 388
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.00 E-value=0.61 Score=45.22 Aligned_cols=89 Identities=19% Similarity=0.170 Sum_probs=55.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-C-HHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-G-HQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~D~V~i~t~ 83 (376)
..+|.|+|.|..|...+..|++ .+.++++ +|..+... ...++. + |+. .+. + ..+.+.. .|+|+....
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~---~G~~v~~-~D~~~~~~-~~~~l~-~-g~~--~~~~~~~~~~~~~--~d~vv~spg 74 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLA---RGVTPRV-IDTRITPP-GLDKLP-E-NVE--RHTGSLNDEWLLA--ADLIVASPG 74 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHH---CCCeEEE-EcCCCCch-hHHHHh-c-CCE--EEeCCCCHHHhcC--CCEEEECCC
Confidence 3579999999999987765555 4778764 77654321 122332 2 654 221 1 2233433 686554443
Q ss_pred CCccHHHHHHHHcCCCCCeEEEec
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEK 107 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EK 107 (376)
-..+.+.+.+|.+ +|.+|+.|-
T Consensus 75 i~~~~~~~~~a~~--~g~~v~~~~ 96 (438)
T PRK03806 75 IALAHPSLSAAAD--AGIEIVGDI 96 (438)
T ss_pred CCCCCHHHHHHHH--CCCeEEEHH
Confidence 3445677888899 889998874
No 389
>PRK14851 hypothetical protein; Provisional
Probab=93.00 E-value=0.63 Score=47.48 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=59.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh-------------------hhHHHHHHHHHhcC--CCCCcc-
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL-------------------QSRQQALKLANAFD--WPLKVF- 63 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~-------------------~~~~~~~~~~~~~~--~~~~~~- 63 (376)
.-||+|||+|.+|..++..|... ++.-..++|.|. .+.+.+++..++.+ +.+..|
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~---GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRT---GIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP 119 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHh---CCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 57999999999999999998886 444444555432 12222222222322 112222
Q ss_pred -----CCHHHHhhCCCCCEEEEeCCCCc---cHHHHHHHHcCCCCCeEEEecC
Q 017143 64 -----PGHQELLDSGLCDVVVVSTPNMT---HYQILMDIINHPKPHHVLVEKP 108 (376)
Q Consensus 64 -----~~~~~~l~~~~~D~V~i~t~~~~---h~~~~~~al~~~~g~~Vl~EKP 108 (376)
++.+++++. +|+|+-|+.+.. ...+...|.+ .++++++--|
T Consensus 120 ~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~--~~iP~i~~g~ 168 (679)
T PRK14851 120 AGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMARE--KGIPVITAGP 168 (679)
T ss_pred cCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeec
Confidence 245677765 899998886532 3445666778 7899887653
No 390
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=92.98 E-value=0.46 Score=39.62 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=50.5
Q ss_pred cEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCC-----------------------------CCEEEEeCC
Q 017143 33 VSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGL-----------------------------CDVVVVSTP 83 (376)
Q Consensus 33 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------------~D~V~i~t~ 83 (376)
-.++.|+|-|.+-++.+..+-+.-|+.+..|.|-+++|.... ++.=+|...
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT 83 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT 83 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEe
Confidence 356777777776555555566666766677888777777531 332222222
Q ss_pred CCccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143 84 NMTHYQILMDIINHPKPHHVLVEKPLCT 111 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~EKP~a~ 111 (376)
-+--.+++.+|++ +|-.=|+|||+..
T Consensus 84 GhgDIpmaV~AmK--~GAvDFLeKP~~~ 109 (202)
T COG4566 84 GHGDIPMAVQAMK--AGAVDFLEKPFSE 109 (202)
T ss_pred CCCChHHHHHHHH--cchhhHHhCCCch
Confidence 2344788999999 8888999999853
No 391
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.97 E-value=0.53 Score=42.54 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=55.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--CCHHHHh----hCCCCCEEEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--PGHQELL----DSGLCDVVVV 80 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l----~~~~~D~V~i 80 (376)
-+|.|+|+|.+|...+..++.. +++.+.++++++++.+ +++++|.. .++ ++..+.+ ....+|+|+-
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~---G~~~Vi~~~~~~~r~~----~a~~~Ga~-~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAA---GAARVVAADPSPDRRE----LALSFGAT-ALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHH----HHHHcCCc-EecCchhhHHHHHHHhCCCCCCEEEE
Confidence 3789999999998876665554 7763334577776443 45556654 222 2222222 2235899999
Q ss_pred eCCCCccHHHHHHHHcCCCCCeEEE
Q 017143 81 STPNMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
++....-...+.++++. .|+-|++
T Consensus 194 ~~G~~~~~~~~~~~l~~-~G~iv~~ 217 (280)
T TIGR03366 194 FSGATAAVRACLESLDV-GGTAVLA 217 (280)
T ss_pred CCCChHHHHHHHHHhcC-CCEEEEe
Confidence 88766666777888874 2555544
No 392
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=92.95 E-value=0.54 Score=38.60 Aligned_cols=75 Identities=21% Similarity=0.174 Sum_probs=52.4
Q ss_pred ceeEEEEeC--ChhhHHHHHHhhhhcCCCcEEEEEeCCC----h--hhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCE
Q 017143 6 TVKYGIIGM--GMMGREHFINLHHLRSQGVSVVCIADPH----L--QSRQQALKLANAFDWPLKVFPGHQELLDSGLCDV 77 (376)
Q Consensus 6 ~~~v~iiG~--G~~g~~~~~~~~~~~~~~~~~~~v~d~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~ 77 (376)
.+||++||= +++.+..+..+..+ +.+++.++-.. + +-.+.+++.+.+.|..+..+++.++.++. .|+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~---g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~--aDv 76 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKF---GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKG--ADV 76 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHT---TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT---SE
T ss_pred CCEEEEECCCCChHHHHHHHHHHHc---CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCC--CCE
Confidence 489999994 67888888888888 67766554333 1 12244555555556545678999999987 899
Q ss_pred EEEeCCCC
Q 017143 78 VVVSTPNM 85 (376)
Q Consensus 78 V~i~t~~~ 85 (376)
|+..+..+
T Consensus 77 vy~~~~~s 84 (158)
T PF00185_consen 77 VYTDRWQS 84 (158)
T ss_dssp EEEESSSC
T ss_pred EEEcCccc
Confidence 88887763
No 393
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.94 E-value=2.7 Score=40.32 Aligned_cols=94 Identities=18% Similarity=0.064 Sum_probs=54.4
Q ss_pred eEEEEe-CChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHH-Hhc---CCCCCc--c---CCHHHHh----hC
Q 017143 8 KYGIIG-MGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLA-NAF---DWPLKV--F---PGHQELL----DS 72 (376)
Q Consensus 8 ~v~iiG-~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~-~~~---~~~~~~--~---~~~~~~l----~~ 72 (376)
+|.|+| +|.+|...+..++... -+. +++ ++++++++++.++++. ... |..... + +++.+.+ ..
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G-~g~~~Vi-~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g 255 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGP-IGPSLLV-VTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGG 255 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcc-cCCceEE-EEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCC
Confidence 789998 6999998776655541 123 455 5688887655554430 000 221001 1 2343332 22
Q ss_pred CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEE
Q 017143 73 GLCDVVVVSTPNMTHYQILMDIINHPKPHHVL 104 (376)
Q Consensus 73 ~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl 104 (376)
..+|+|+.++........+.++++.+ |+-|+
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~-G~~v~ 286 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPD-GCLNF 286 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccC-CeEEE
Confidence 35899999987766777788888732 44443
No 394
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.91 E-value=1.4 Score=40.81 Aligned_cols=78 Identities=12% Similarity=0.198 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCC--CCccCCH-HHHhhCCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 017143 48 QALKLANAFDWP--LKVFPGH-QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124 (376)
Q Consensus 48 ~~~~~~~~~~~~--~~~~~~~-~~~l~~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~ 124 (376)
...+.++++|++ ...|+.- -+++.+-++|++=|++.+-.+.+++..+.+ .||+|++-..++ +.+|....++..+
T Consensus 81 ~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~--~gkPvilstG~~-t~~Ei~~Av~~i~ 157 (327)
T TIGR03586 81 ELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAK--TGKPIIMSTGIA-TLEEIQEAVEACR 157 (327)
T ss_pred HHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHh--cCCcEEEECCCC-CHHHHHHHHHHHH
Confidence 455668889988 2444421 255666679999999999999999999999 899999999995 9999999999985
Q ss_pred hCCC
Q 017143 125 KRPD 128 (376)
Q Consensus 125 ~~~~ 128 (376)
+.++
T Consensus 158 ~~g~ 161 (327)
T TIGR03586 158 EAGC 161 (327)
T ss_pred HCCC
Confidence 5433
No 395
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.81 E-value=0.65 Score=45.34 Aligned_cols=88 Identities=25% Similarity=0.207 Sum_probs=54.1
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHH-HHHHHhcCCCCCccC--CHH-----HHhhCCCCCEE
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQA-LKLANAFDWPLKVFP--GHQ-----ELLDSGLCDVV 78 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~-~~~~~~~~~~~~~~~--~~~-----~~l~~~~~D~V 78 (376)
||.|||+|..|...+..+.+ .+.+++ ++|..+... ... ..+ +..|+. .+. +.+ +.+.+ +|+|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~---~G~~V~-~~D~~~~~~~~~~~~~l-~~~gi~--~~~g~~~~~~~~~~~~~~--~d~v 72 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA---QGWEVV-VSDRNDSPELLERQQEL-EQEGIT--VKLGKPLELESFQPWLDQ--PDLV 72 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH---CCCEEE-EECCCCchhhHHHHHHH-HHcCCE--EEECCccchhhhhHHhhc--CCEE
Confidence 79999999999986655555 478765 678765421 111 123 234654 221 111 34443 8988
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~E 106 (376)
+++..-....+...+|.+ .|.+|+-+
T Consensus 73 v~s~gi~~~~~~~~~a~~--~~i~v~~~ 98 (459)
T PRK02705 73 VVSPGIPWDHPTLVELRE--RGIEVIGE 98 (459)
T ss_pred EECCCCCCCCHHHHHHHH--cCCcEEEh
Confidence 885554455577777888 78888754
No 396
>PRK06153 hypothetical protein; Provisional
Probab=92.81 E-value=0.89 Score=42.72 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=28.8
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
..||+|||+|..|...+..|++. ++.=+.++|.|.
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~---GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKT---PVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHc---CCCEEEEECCCE
Confidence 46999999999999999999997 454555788774
No 397
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=92.81 E-value=0.86 Score=42.95 Aligned_cols=142 Identities=17% Similarity=0.090 Sum_probs=78.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-CccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
|||.|||.|. +.|.-+++-.+.+.+.-+.++-.++-. +. ...-.++++ ..+..+.++..+.++|+|+|.--..
T Consensus 1 mkVLviGsGg--REHAiA~~la~s~~v~~~~~apgN~G~---a~-~~~~~~~~~~~~~~~lv~fA~~~~idl~vVGPE~p 74 (428)
T COG0151 1 MKVLVIGSGG--REHALAWKLAQSPLVLYVYVAPGNPGT---AL-EAYLVNIEIDTDHEALVAFAKEKNVDLVVVGPEAP 74 (428)
T ss_pred CeEEEEcCCc--hHHHHHHHHhcCCceeEEEEeCCCCcc---ch-hhhhccCccccCHHHHHHHHHHcCCCEEEECCcHH
Confidence 6899999995 555555433322666666666555542 11 111123332 1233444555567899999876555
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV 161 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~ 161 (376)
+-.-++-..-+ +|.+||==+-.+.-++..+...+.--++++++ ...-..|. ....++..|++ .|.+.-|
T Consensus 75 L~~GvvD~l~~--~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IP--ta~y~~f~-~~e~a~ayi~~--~g~piVV 143 (428)
T COG0151 75 LVAGVVDALRA--AGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIP--TAEYEVFT-DPEEAKAYIDE--KGAPIVV 143 (428)
T ss_pred HhhhhHHHHHH--CCCceeCcCHHHHHHHhhHHHHHHHHHHcCCC--cccccccC-CHHHHHHHHHH--cCCCEEE
Confidence 55555555556 78888755444445555555444444555666 33333344 56666666663 5554333
No 398
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.73 E-value=0.54 Score=45.74 Aligned_cols=91 Identities=20% Similarity=0.120 Sum_probs=53.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
=-|+|||+|..|...+..|.+ .+.+++ ++|..+... ...++.++ .|+++..-..-.+.+.+ +|+|+++.--.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~---~G~~v~-~~D~~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~--~d~vV~sp~i~ 79 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLAR---QGIPFA-VMDSREQPP-GLDTLAREFPDVELRCGGFDCELLVQ--ASEIIISPGLA 79 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHh---CCCeEE-EEeCCCCch-hHHHHHhhcCCcEEEeCCCChHHhcC--CCEEEECCCCC
Confidence 468999999999985555555 478866 588654321 22334433 36651111112344543 78776655434
Q ss_pred ccHHHHHHHHcCCCCCeEEEe
Q 017143 86 THYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~E 106 (376)
...+...+|.+ +|++|+-|
T Consensus 80 ~~~p~~~~a~~--~~i~i~~~ 98 (448)
T PRK03803 80 LDTPALRAAAA--MGIEVIGD 98 (448)
T ss_pred CCCHHHHHHHH--CCCcEEEH
Confidence 44456677778 78888764
No 399
>PTZ00309 glucose-6-phosphate 1-dehydrogenase; Provisional
Probab=92.65 E-value=0.97 Score=44.54 Aligned_cols=118 Identities=14% Similarity=0.223 Sum_probs=68.5
Q ss_pred ceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH-HH----HHH--------------HHHhc---
Q 017143 6 TVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR-QQ----ALK--------------LANAF--- 56 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~-~~----~~~--------------~~~~~--- 56 (376)
+..+.|+|+ |-.++ ..+|+|.++. ++++.|+|+.-.+-+.. +. ..+ |.++.
T Consensus 54 ~~~iVIFGATGDLA~RKL~PAL~~L~~~g~lp~~~~IiG~aR~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~F~~~~~Y~ 133 (542)
T PTZ00309 54 ALTIIVLGASGDLAKKKTFPALFQLYCEGLLPSEVNIVGYARSKMSDVERWKKETLARFFKRLDDRECHLEQFLKHISYI 133 (542)
T ss_pred CeEEEEecCccHHhhhhHHHHHHHHHHcCCCCCCCEEEEEeCCCCCcHHHHHHHHHHHHhhccCCcHHHHHHHHhcCEEE
Confidence 578899995 66665 5788876652 36899999873322221 11 111 11110
Q ss_pred --CCC-CCccCCHHHHhhCC----------CCCEEEEeCCCCccHHHHHHHHcCC---CC-CeEEEecCCCCCHHHHHHH
Q 017143 57 --DWP-LKVFPGHQELLDSG----------LCDVVVVSTPNMTHYQILMDIINHP---KP-HHVLVEKPLCTTVADCKKV 119 (376)
Q Consensus 57 --~~~-~~~~~~~~~~l~~~----------~~D~V~i~t~~~~h~~~~~~al~~~---~g-~~Vl~EKP~a~~~~e~~~l 119 (376)
++. ...|..+.+.+..- .--+.++++||+.=..++...-++| .| .-|.+|||++.+.+.|++|
T Consensus 134 ~~d~~~~~~y~~L~~~l~~~e~~~~~~~~~~nrlfYLAlPP~~f~~i~~~L~~~~l~~~G~~RiViEKPFG~Dl~SA~~L 213 (542)
T PTZ00309 134 SGSYDEDEDFKRLNKLIERMEEAFQGPEKGGNRLFYLALPPSVFASVCEGIHRGCMSKNGWVRVIVEKPFGRDLESSEEL 213 (542)
T ss_pred ecCCCChHHHHHHHHHHHHHHhhhcccCCCCcEEEEEECCHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHH
Confidence 000 01111222333220 1127899999987655555443311 12 4699999999999999999
Q ss_pred HHHH
Q 017143 120 VDAA 123 (376)
Q Consensus 120 ~~~a 123 (376)
-+..
T Consensus 214 n~~l 217 (542)
T PTZ00309 214 SNQL 217 (542)
T ss_pred HHHH
Confidence 9877
No 400
>PRK06091 membrane protein FdrA; Validated
Probab=92.62 E-value=0.5 Score=46.36 Aligned_cols=71 Identities=10% Similarity=0.150 Sum_probs=55.8
Q ss_pred ccCCHHHHhhC-CCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc
Q 017143 62 VFPGHQELLDS-GLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY 137 (376)
Q Consensus 62 ~~~~~~~~l~~-~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~ 137 (376)
.|.+|++++++ +++|+++|++|...-.+.+.+|++ +|++|++---- ...+.-++|.+.|+++ |+ .++|.++
T Consensus 104 ~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~--~G~~viI~S~g-fg~~~E~~L~e~Ar~~-Gl-rvmGPNC 175 (555)
T PRK06091 104 QVRRWDSACQKLPDANLALISVAGEYAAELAEQALD--RNLNVMMFSDN-VTLEDEIRLKTRAREK-GL-LVMGPDC 175 (555)
T ss_pred ccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHH--cCCeEEEEcCC-CCHHHHHHHHHHHHHc-CC-EEECCCC
Confidence 68899998875 568999999999999999999999 77887764332 2577788999999554 74 4466666
No 401
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.59 E-value=0.44 Score=40.73 Aligned_cols=35 Identities=37% Similarity=0.493 Sum_probs=29.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
.-||.|||+|.+|...++.|... ++.-+.++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~---GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA---GIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEECCc
Confidence 47999999999999999998885 777777888764
No 402
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=92.55 E-value=1.4 Score=39.89 Aligned_cols=141 Identities=14% Similarity=0.168 Sum_probs=78.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHH------------HHHHHHHhc-CCCCCccCCHHHHhhC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ------------QALKLANAF-DWPLKVFPGHQELLDS 72 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~l~~ 72 (376)
++||+-||+|..|..-..-++. ..|+++++ |+|.+..+.. -..++..+. |...-.-+|++..+..
T Consensus 1 ~~kiccigagyvggptcavia~-kcp~i~vt-vvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e 78 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIAL-KCPDIEVT-VVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE 78 (481)
T ss_pred CceEEEecCcccCCcchheeee-cCCceEEE-EEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh
Confidence 3689999999998753332222 23899866 6788776421 011222221 2211223578888877
Q ss_pred CCCCEEEEeCCCCcc-----------H----HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHH-hCCCeEEEEeec
Q 017143 73 GLCDVVVVSTPNMTH-----------Y----QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR-KRPDILVQVGLE 136 (376)
Q Consensus 73 ~~~D~V~i~t~~~~h-----------~----~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~-~~~~~~~~v~~~ 136 (376)
.|+|+|...+... . ..++...+...+--+.+||.- ..+..|..+..... .+.|+.+++-.+
T Consensus 79 --adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekst-vpv~aaesi~~il~~n~~~i~fqilsn 155 (481)
T KOG2666|consen 79 --ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKST-VPVKAAESIEKILNHNSKGIKFQILSN 155 (481)
T ss_pred --cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeecc-ccchHHHHHHHHHhcCCCCceeEeccC
Confidence 6777766543221 1 122222221146679999964 23333333333332 345888888888
Q ss_pred cccCHHHHHHHHHHH
Q 017143 137 YRYMPPVAKLIQIVK 151 (376)
Q Consensus 137 ~r~~p~~~~~k~~i~ 151 (376)
.-|-..=..+|.+.+
T Consensus 156 peflaegtaikdl~n 170 (481)
T KOG2666|consen 156 PEFLAEGTAIKDLFN 170 (481)
T ss_pred hHHhcccchhhhhcC
Confidence 777666666666654
No 403
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=92.55 E-value=1.7 Score=36.82 Aligned_cols=73 Identities=15% Similarity=0.034 Sum_probs=45.4
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHhhCCCCCEEEEeC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~D~V~i~t 82 (376)
..+|.-||||. |..-+...... ++.++++ +|.+++..+.+++.+++.+++ + -...+.+++.....+|+|+...
T Consensus 46 g~~VLDiGcGt-G~~al~la~~~--~~~~V~g-iD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~ 120 (187)
T PRK00107 46 GERVLDVGSGA-GFPGIPLAIAR--PELKVTL-VDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA 120 (187)
T ss_pred CCeEEEEcCCC-CHHHHHHHHHC--CCCeEEE-EeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc
Confidence 46899999984 33222222233 6778887 599988777777777776654 2 1234555544444699999743
No 404
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.52 E-value=0.28 Score=45.09 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=44.1
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHHh--c-CC-CCCc-cCCHHHHhhCCCCCEEEEe
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLANA--F-DW-PLKV-FPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~--~-~~-~~~~-~~~~~~~l~~~~~D~V~i~ 81 (376)
||+|||+|.+|...+..+... +-+.-+.++|.+++.. ..+.++..- + +. .++. .++|+++ + +.|+|+|+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~--~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~--~aDivvit 75 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL--GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-A--DADIIVIT 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-C--CCCEEEEC
Confidence 799999999999877777665 4555566889877633 233344321 1 11 1122 2466554 3 37999997
Q ss_pred CC
Q 017143 82 TP 83 (376)
Q Consensus 82 t~ 83 (376)
.-
T Consensus 76 aG 77 (307)
T cd05290 76 AG 77 (307)
T ss_pred CC
Confidence 65
No 405
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=92.49 E-value=0.67 Score=42.35 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=61.1
Q ss_pred CCceeEEEEeCChhhHHHHHHhhhhcC--C-CcEEEEEeCCChhhHHHHHHHHH---------hc----CCC--CCccCC
Q 017143 4 NDTVKYGIIGMGMMGREHFINLHHLRS--Q-GVSVVCIADPHLQSRQQALKLAN---------AF----DWP--LKVFPG 65 (376)
Q Consensus 4 ~~~~~v~iiG~G~~g~~~~~~~~~~~~--~-~~~~~~v~d~~~~~~~~~~~~~~---------~~----~~~--~~~~~~ 65 (376)
++++||+|||.|.||......+..+-. + .-.-|..|-+.++--.+.+.+.+ +| .+| +...+|
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 357999999999999877666544310 1 11112233222211011222222 11 222 345678
Q ss_pred HHHHhhCCCCCEEEEeCCCCccHHHHHHHH---cCCCCCeEEEecCCCCC
Q 017143 66 HQELLDSGLCDVVVVSTPNMTHYQILMDII---NHPKPHHVLVEKPLCTT 112 (376)
Q Consensus 66 ~~~~l~~~~~D~V~i~t~~~~h~~~~~~al---~~~~g~~Vl~EKP~a~~ 112 (376)
+.++..+ .|+++-..|+++-..+..+.. +. .-..|-|-|=+...
T Consensus 99 l~ea~~d--ADilvf~vPhQf~~~ic~~l~g~vk~-~~~aISL~KG~e~~ 145 (372)
T KOG2711|consen 99 LVEAAKD--ADILVFVVPHQFIPRICEQLKGYVKP-GATAISLIKGVEVG 145 (372)
T ss_pred HHHHhcc--CCEEEEeCChhhHHHHHHHHhcccCC-CCeEEEeecceecc
Confidence 8888877 899999999999888777764 31 12236666666544
No 406
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=92.47 E-value=2.8 Score=35.27 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=41.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCcc-CCHHHHhhCCCCCEEEEeC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVF-PGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~D~V~i~t 82 (376)
-+|.=||+|. |..-+...... ++.++++ +|.+++..+.+++-.++++++ ++.. .+....+. ..+|+|++..
T Consensus 33 ~~vLDiG~G~-G~~~~~la~~~--~~~~v~~-vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~-~~~D~v~~~~ 105 (187)
T PRK08287 33 KHLIDVGAGT-GSVSIEAALQF--PSLQVTA-IERNPDALRLIKENRQRFGCGNIDIIPGEAPIELP-GKADAIFIGG 105 (187)
T ss_pred CEEEEECCcC-CHHHHHHHHHC--CCCEEEE-EECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcC-cCCCEEEECC
Confidence 5788899984 43322223333 6678776 599998776666666666543 2222 23332332 3589888754
No 407
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=92.42 E-value=2.8 Score=39.12 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=48.7
Q ss_pred CCcEEEEEeCCChhhHHH-HHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCccHHHHH-HH---HcCCCCCeEEE
Q 017143 31 QGVSVVCIADPHLQSRQQ-ALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILM-DI---INHPKPHHVLV 105 (376)
Q Consensus 31 ~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h~~~~~-~a---l~~~~g~~Vl~ 105 (376)
.+.+|+ ++|++++..+. ..+...+.|+. ..++..+++++ .|+|++++|+..+.+-+. .. +. .| .+++
T Consensus 42 aG~~V~-v~Dr~~~~l~~~~~~~l~~~Gi~--~asd~~eaa~~--ADvVIlaVP~~~~v~~Vl~~L~~~L~--~g-~IVI 113 (342)
T PRK12557 42 AGHDVV-LAEPNRSILSEELWKKVEDAGVK--VVSDDAEAAKH--GEIHILFTPFGKKTVEIAKNILPHLP--EN-AVIC 113 (342)
T ss_pred CCCeEE-EEECCHHHhhHHHHHHHHHCCCE--EeCCHHHHHhC--CCEEEEECCCcHHHHHHHHHHHhhCC--CC-CEEE
Confidence 366755 67888763321 22223455754 67788888765 899999999887433333 22 34 34 4666
Q ss_pred ecCCCCCHHHH-HHHHHHH
Q 017143 106 EKPLCTTVADC-KKVVDAA 123 (376)
Q Consensus 106 EKP~a~~~~e~-~~l~~~a 123 (376)
.-. +.+.... +.+.+..
T Consensus 114 d~S-T~~~~~~s~~l~~~l 131 (342)
T PRK12557 114 NTC-TVSPVVLYYSLEGEL 131 (342)
T ss_pred Eec-CCCHHHHHHHHHHHh
Confidence 644 3345544 4444443
No 408
>PLN02740 Alcohol dehydrogenase-like
Probab=92.40 E-value=1.1 Score=42.56 Aligned_cols=137 Identities=11% Similarity=0.077 Sum_probs=75.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcE-EEEEeCCChhhHHHHHHHHHhcCCCCCcc--C----CHHHHhhC---CCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVS-VVCIADPHLQSRQQALKLANAFDWPLKVF--P----GHQELLDS---GLCD 76 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~~---~~~D 76 (376)
=+|.|+|+|.+|...+..++.. +.+ ++ ++++++++++.+ +++|.+ .++ . ++.+.+.+ ..+|
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~---G~~~Vi-~~~~~~~r~~~a----~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARAR---GASKII-GVDINPEKFEKG----KEMGIT-DFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCCcEE-EEcCChHHHHHH----HHcCCc-EEEecccccchHHHHHHHHhCCCCC
Confidence 3799999999999877766664 664 55 457777654433 456654 222 1 13332221 2589
Q ss_pred EEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHHHHcCC
Q 017143 77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQIVKSGS 154 (376)
Q Consensus 77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~i~~g~ 154 (376)
+|+-++........+..+++.+.|+-|++=-+.....-+.. ..... + ++.+.-.+...| ...+..+.+++.+|.
T Consensus 271 vvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~-~~~~~-~--~~~i~g~~~~~~~~~~~~~~~~~~~~~g~ 346 (381)
T PLN02740 271 YSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLH-PMELF-D--GRSITGSVFGDFKGKSQLPNLAKQCMQGV 346 (381)
T ss_pred EEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceeccc-HHHHh-c--CCeEEEEecCCCCcHHHHHHHHHHHHcCC
Confidence 99999987767777878886212666665433211000111 11122 1 233322222223 245677778888877
Q ss_pred CC
Q 017143 155 IG 156 (376)
Q Consensus 155 iG 156 (376)
+-
T Consensus 347 i~ 348 (381)
T PLN02740 347 VN 348 (381)
T ss_pred CC
Confidence 64
No 409
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=92.40 E-value=0.53 Score=43.52 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=41.9
Q ss_pred CceeEEEEeC-ChhhHHHHHHhhhhcCCCc------EEEEEeCCChh--h-HHHHHHHHHhc--CCC-CCccCCHHHHhh
Q 017143 5 DTVKYGIIGM-GMMGREHFINLHHLRSQGV------SVVCIADPHLQ--S-RQQALKLANAF--DWP-LKVFPGHQELLD 71 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~------~~~~v~d~~~~--~-~~~~~~~~~~~--~~~-~~~~~~~~~~l~ 71 (376)
+++||+|||+ |.+|...+..+... +-+ ++ .++|..+. . ...+.++..-. ..+ .....+-.+.++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el-~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVL-HLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEE-EEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 5899999998 99999877766654 322 44 47788542 1 12233332110 000 112223234444
Q ss_pred CCCCCEEEEeCCC
Q 017143 72 SGLCDVVVVSTPN 84 (376)
Q Consensus 72 ~~~~D~V~i~t~~ 84 (376)
+ .|+|+|+.-.
T Consensus 79 d--aDvVVitAG~ 89 (323)
T TIGR01759 79 D--VDAALLVGAF 89 (323)
T ss_pred C--CCEEEEeCCC
Confidence 4 7999987653
No 410
>PRK14031 glutamate dehydrogenase; Provisional
Probab=92.30 E-value=1.8 Score=41.63 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=67.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeC----------CChhhHHHHHHHH-----------HhcCCCCCccC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIAD----------PHLQSRQQALKLA-----------NAFDWPLKVFP 64 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d----------~~~~~~~~~~~~~-----------~~~~~~~~~~~ 64 (376)
-.||+|.|.|..|...+..|.+. +.+|++|+| .+.+.+....++. .+++.. +-
T Consensus 228 g~rVaVQGfGNVG~~aA~~L~e~---GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~---~i 301 (444)
T PRK14031 228 GKVCLVSGSGNVAQYTAEKVLEL---GGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCK---YV 301 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCE---Ec
Confidence 47999999999999888888775 999999999 6665332111221 112211 22
Q ss_pred CHHHHhhCCCCCEEEEeCC-CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143 65 GHQELLDSGLCDVVVVSTP-NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120 (376)
Q Consensus 65 ~~~~~l~~~~~D~V~i~t~-~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~ 120 (376)
+-++++.. ++|+.+=|.- +.-+.+-+.+... .|.-+++|--=..+..++.++.
T Consensus 302 ~~d~~~~~-~cDIliPaAl~n~I~~~na~~l~a--~g~~~V~EgAN~P~t~eA~~~L 355 (444)
T PRK14031 302 EGARPWGE-KGDIALPSATQNELNGDDARQLVA--NGVIAVSEGANMPSTPEAIKVF 355 (444)
T ss_pred CCcccccC-CCcEEeecccccccCHHHHHHHHh--cCCeEEECCCCCCCCHHHHHHH
Confidence 44556554 4777665444 3466666666555 5677888876666666666544
No 411
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=92.22 E-value=1.3 Score=38.94 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=28.3
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
||.|||+|..|...++.|... ++.-..++|.|.=
T Consensus 1 kVlvvG~GGlG~eilk~La~~---Gvg~i~ivD~D~V 34 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM---GFGQIHVIDMDTI 34 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCEE
Confidence 689999999999999998886 6666778887654
No 412
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.13 E-value=1.1 Score=40.64 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=60.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC----CCcc-CCHHHHhhC---CCCCEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP----LKVF-PGHQELLDS---GLCDVV 78 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~l~~---~~~D~V 78 (376)
-.++|+|+|..|..-+...+.. ..-++++ +|.++++.+++++ +|.. ++-+ ..++|.+.+ ..+|.-
T Consensus 194 stvAVfGLG~VGLav~~Gaka~--GAsrIIg-vDiN~~Kf~~ak~----fGaTe~iNp~d~~~~i~evi~EmTdgGvDys 266 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAA--GASRIIG-VDINPDKFEKAKE----FGATEFINPKDLKKPIQEVIIEMTDGGVDYS 266 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhc--CcccEEE-EecCHHHHHHHHh----cCcceecChhhccccHHHHHHHHhcCCceEE
Confidence 4689999999998877776665 5667777 5999986655554 4543 1111 224444442 457777
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEEecCC
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPL 109 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~ 109 (376)
+=|+-+..-...+.++.+.|-|+.|++=-+.
T Consensus 267 fEc~G~~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022|consen 267 FECIGNVSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred EEecCCHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 7777665555555666654456666664433
No 413
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=92.12 E-value=1.5 Score=43.51 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=61.4
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH---HHHHHHHHhcCCC--CC-----ccCCHHHHhhCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR---QQALKLANAFDWP--LK-----VFPGHQELLDSGLC 75 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~---~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~~~ 75 (376)
.-||+|+|+|.+|...+..|..+.-+.+..+ ++|.....+ ....+.+++++-. +. .-+++.+.++. .
T Consensus 129 ~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~v-d~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~--~ 205 (637)
T TIGR03693 129 NAKILAAGSGDFLTKLVRSLIDSGFPRFHAI-VTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEP--A 205 (637)
T ss_pred cccEEEEecCchHHHHHHHHHhcCCCcEEEE-eccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcC--C
Confidence 4799999999999999999998733333322 234433222 2335556555432 11 22456667754 8
Q ss_pred CEEEEeCCCCccH---HHHHHHHcCCCCCeEEEecCC
Q 017143 76 DVVVVSTPNMTHY---QILMDIINHPKPHHVLVEKPL 109 (376)
Q Consensus 76 D~V~i~t~~~~h~---~~~~~al~~~~g~~Vl~EKP~ 109 (376)
|+|+..+.+..+. .+-.+|++ .|++-+--||.
T Consensus 206 DiVi~vsDdy~~~~Lr~lN~acvk--egk~~IPai~~ 240 (637)
T TIGR03693 206 DWVLYVSDNGDIDDLHALHAFCKE--EGKGFIPAICL 240 (637)
T ss_pred cEEEEECCCCChHHHHHHHHHHHH--cCCCeEEEEEc
Confidence 9999999876654 44556788 77665554443
No 414
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=92.12 E-value=4.2 Score=37.61 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=55.2
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCHHH-HhhCCCCCEEEEeC
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGHQE-LLDSGLCDVVVVST 82 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~l~~~~~D~V~i~t 82 (376)
+|.|.|.|.+|...+..++.. +++++++ ++++++. ++++++|.. .+. .++.+ +.....+|+|+-++
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~---G~~vi~~-~~~~~~~----~~~~~~g~~-~~i~~~~~~~~~~~~~~~~~d~vi~~~ 236 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKM---GFRTVAI-SRGSDKA----DLARKLGAH-HYIDTSKEDVAEALQELGGAKLILATA 236 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHC---CCeEEEE-eCChHHH----HHHHHcCCc-EEecCCCccHHHHHHhcCCCCEEEECC
Confidence 789999999998876666664 7787765 5555532 334556654 221 12333 32223589999877
Q ss_pred CCCccHHHHHHHHcCCCCCeEEE
Q 017143 83 PNMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 83 ~~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
........+.++++. .|+-|.+
T Consensus 237 g~~~~~~~~~~~l~~-~G~~v~~ 258 (333)
T cd08296 237 PNAKAISALVGGLAP-RGKLLIL 258 (333)
T ss_pred CchHHHHHHHHHccc-CCEEEEE
Confidence 656677888888874 3555554
No 415
>PRK14967 putative methyltransferase; Provisional
Probab=92.09 E-value=7.5 Score=33.77 Aligned_cols=72 Identities=17% Similarity=-0.002 Sum_probs=43.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC-CccCCHHHHhhCCCCCEEEEeCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
-+|.-+|||. |...+ .++.. ...++++ +|.++...+.+++-++..++.+ -...|+.+.+.+..+|+|+...|
T Consensus 38 ~~vLDlGcG~-G~~~~-~la~~--~~~~v~~-vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npP 110 (223)
T PRK14967 38 RRVLDLCTGS-GALAV-AAAAA--GAGSVTA-VDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPP 110 (223)
T ss_pred CeEEEecCCH-HHHHH-HHHHc--CCCeEEE-EECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCC
Confidence 5899999996 55322 23333 2236665 5999886665655555555432 12246656555556898887544
No 416
>PRK05086 malate dehydrogenase; Provisional
Probab=92.06 E-value=0.31 Score=44.94 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=42.8
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH-hcCCCCCc--cCCHHHHhhCCCCCEEEEeC
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN-AFDWPLKV--FPGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~l~~~~~D~V~i~t 82 (376)
+||+|||+ |.+|...+..+.... +....+.++|+++.....+..+.. .....+.. .+++.+.+.+ .|+|++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~-~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~--~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL-PAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEG--ADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC-CCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCC--CCEEEEcC
Confidence 58999999 999998776664421 344555677876542111122221 11111111 2465555654 99999987
Q ss_pred CC
Q 017143 83 PN 84 (376)
Q Consensus 83 ~~ 84 (376)
-.
T Consensus 78 G~ 79 (312)
T PRK05086 78 GV 79 (312)
T ss_pred CC
Confidence 74
No 417
>PLN02477 glutamate dehydrogenase
Probab=92.02 E-value=1.6 Score=41.67 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=61.0
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC----------hhhHHHHHHHHHhcCCCCCcc-----CCHHHH
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH----------LQSRQQALKLANAFDWPLKVF-----PGHQEL 69 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 69 (376)
+..||+|.|.|.+|+..+..|.+. +.+|++|+|.+ .+ ...+..++.+- +..| -+.+++
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~---GakVVaVsD~~G~iy~~~GLD~~---~L~~~k~~~g~-l~~~~~a~~i~~~e~ 277 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEK---GGKIVAVSDITGAVKNENGLDIP---ALRKHVAEGGG-LKGFPGGDPIDPDDI 277 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEECCCCeEECCCCCCHH---HHHHHHHhcCc-hhccccceEecCccc
Confidence 347999999999999988877664 89999999987 44 33333222221 1111 134566
Q ss_pred hhCCCCCEEEEeCC-CCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143 70 LDSGLCDVVVVSTP-NMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120 (376)
Q Consensus 70 l~~~~~D~V~i~t~-~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~ 120 (376)
+.. ++|+.+=|.- +.-+.+-+.+ ++ ..+++|--=.....++.+++
T Consensus 278 l~~-~~DvliP~Al~~~I~~~na~~-i~----ak~I~egAN~p~t~ea~~~L 323 (410)
T PLN02477 278 LVE-PCDVLIPAALGGVINKENAAD-VK----AKFIVEAANHPTDPEADEIL 323 (410)
T ss_pred eec-cccEEeeccccccCCHhHHHH-cC----CcEEEeCCCCCCCHHHHHHH
Confidence 665 5887776643 3444444443 34 34777753333334455444
No 418
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.01 E-value=0.28 Score=41.00 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=43.7
Q ss_pred EEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCC--CccC---CHHHHhhCCCCCEEEEeC
Q 017143 9 YGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL--KVFP---GHQELLDSGLCDVVVVST 82 (376)
Q Consensus 9 v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~l~~~~~D~V~i~t 82 (376)
|.|+|+ |.+|+..+..|.+. +.+|++++ |++++ ..+ ..++.+ .-+. ++.+++. +.|+|+.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~---~~~V~~~~-R~~~~---~~~---~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR---GHEVTALV-RSPSK---AED---SPGVEIIQGDLFDPDSVKAALK--GADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TSEEEEEE-SSGGG---HHH---CTTEEEEESCTTCHHHHHHHHT--TSSEEEECC
T ss_pred eEEECCCChHHHHHHHHHHHC---CCEEEEEe-cCchh---ccc---ccccccceeeehhhhhhhhhhh--hcchhhhhh
Confidence 689995 99999999998886 59999877 66664 332 223221 1123 3455665 489999988
Q ss_pred CCC
Q 017143 83 PNM 85 (376)
Q Consensus 83 ~~~ 85 (376)
++.
T Consensus 69 ~~~ 71 (183)
T PF13460_consen 69 GPP 71 (183)
T ss_dssp HST
T ss_pred hhh
Confidence 753
No 419
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=91.97 E-value=2.7 Score=41.30 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=54.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH---HhhCCCCCEEEEeCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE---LLDSGLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~D~V~i~t~ 83 (376)
.++.|||+|..|...+..+.+.+.-+++++|++|.++.. . .-.|+| ++.+.++ ......+| ++|+.|
T Consensus 147 rrvLIIGaG~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~----~---~i~gvP--Vlg~~d~l~~~~~~~~v~-vIIAip 216 (476)
T PRK15204 147 KKTIILGSGQNARGAYSALQSEEMMGFDVIAFFDTDASD----A---EINMLP--VIKDTEIIWDLNRTGDVH-YILAYE 216 (476)
T ss_pred CeEEEEECCHHHHHHHHHHHhCccCCcEEEEEEcCCccc----c---ccCCCc--ccCCHHHHHHHHHhCCCc-EEEEeC
Confidence 579999999999988888876533489999999976542 1 124666 5555443 34344566 478877
Q ss_pred CCc---cHHHHHHHHcCCCCC
Q 017143 84 NMT---HYQILMDIINHPKPH 101 (376)
Q Consensus 84 ~~~---h~~~~~~al~~~~g~ 101 (376)
... ..+++.++.+ .|.
T Consensus 217 ~~~~~~r~~il~~l~~--~gv 235 (476)
T PRK15204 217 YTELEKTHFWLRELSK--HHC 235 (476)
T ss_pred cCcHHHHHHHHHHHhh--cCC
Confidence 543 2245556655 555
No 420
>PRK05442 malate dehydrogenase; Provisional
Probab=91.95 E-value=0.4 Score=44.42 Aligned_cols=75 Identities=9% Similarity=0.147 Sum_probs=40.8
Q ss_pred CceeEEEEeC-ChhhHHHHHHhhhhcCCCcE-----EEEEeCCChhh--H-HHHHHHHHh---cCCCCCccCCHHHHhhC
Q 017143 5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVS-----VVCIADPHLQS--R-QQALKLANA---FDWPLKVFPGHQELLDS 72 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~-----~~~v~d~~~~~--~-~~~~~~~~~---~~~~~~~~~~~~~~l~~ 72 (376)
++.||+|||+ |.+|...+..+... .-+. -+.++|..+.. + ..+.++..- +.-.+..+.+..+.+++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~--~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG--DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh--hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 4789999998 99999877666553 2222 34477885431 1 122222211 10011233333344444
Q ss_pred CCCCEEEEeCC
Q 017143 73 GLCDVVVVSTP 83 (376)
Q Consensus 73 ~~~D~V~i~t~ 83 (376)
.|+|+|+.-
T Consensus 81 --aDiVVitaG 89 (326)
T PRK05442 81 --ADVALLVGA 89 (326)
T ss_pred --CCEEEEeCC
Confidence 799998765
No 421
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=91.94 E-value=0.65 Score=43.93 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=42.8
Q ss_pred CCceeEEEEeC-ChhhHHHHHHhhhhcC----CCcEEEEE-eCCChhhHH-HHHHHHH---hcCCCCCcc-CCHHHHhhC
Q 017143 4 NDTVKYGIIGM-GMMGREHFINLHHLRS----QGVSVVCI-ADPHLQSRQ-QALKLAN---AFDWPLKVF-PGHQELLDS 72 (376)
Q Consensus 4 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~----~~~~~~~v-~d~~~~~~~-~~~~~~~---~~~~~~~~~-~~~~~~l~~ 72 (376)
.+++||+|||+ |.+|...+..+....- ..+.|+=+ +|++.+.++ .+.++.. -+...+.++ +++++ +++
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~-~kd 120 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEV-FED 120 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHH-hCC
Confidence 35799999999 9999988777766510 12344433 477666431 2222221 111112222 44444 444
Q ss_pred CCCCEEEEeCC
Q 017143 73 GLCDVVVVSTP 83 (376)
Q Consensus 73 ~~~D~V~i~t~ 83 (376)
.|+|+|+..
T Consensus 121 --aDIVVitAG 129 (387)
T TIGR01757 121 --ADWALLIGA 129 (387)
T ss_pred --CCEEEECCC
Confidence 799998764
No 422
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=91.87 E-value=1.7 Score=43.16 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=68.6
Q ss_pred ceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HHH------------------HHHHHhcC
Q 017143 6 TVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQA------------------LKLANAFD 57 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~~------------------~~~~~~~~ 57 (376)
...|.|+|+ |-.++ ..+|+|-++- ++++.|+|+.-.+-... +.. .+|.+...
T Consensus 117 ~~~iVIFGASGDLAkRKL~PALf~L~~~g~Lp~~~~IiG~aRs~~t~eefr~~v~~~l~~~~~~~~~~~~~~~~F~~~~~ 196 (604)
T PLN02333 117 TVSITVVGASGDLAKKKIFPALFALYYEGCLPEHFTIFGYARSKMTDAELRNMVSKTLTCRIDKRENCGEKMEEFLKRCF 196 (604)
T ss_pred ceEEEEecCccHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcccccccHHHHHHHHhcCE
Confidence 478899995 66665 5778876652 35799999774332211 111 11111100
Q ss_pred CCCCccCC------HHHHhhCC-----CCCEEEEeCCCCccHHHHHHHHcCC---CC-CeEEEecCCCCCHHHHHHHHHH
Q 017143 58 WPLKVFPG------HQELLDSG-----LCDVVVVSTPNMTHYQILMDIINHP---KP-HHVLVEKPLCTTVADCKKVVDA 122 (376)
Q Consensus 58 ~~~~~~~~------~~~~l~~~-----~~D~V~i~t~~~~h~~~~~~al~~~---~g-~~Vl~EKP~a~~~~e~~~l~~~ 122 (376)
.-..-|++ +.+.++.. .--+.++++||..-..++...-+.+ .| .-|.+|||++.+.+.+++|-+.
T Consensus 197 Y~~gd~d~~e~y~~L~~~l~~~e~~~~~nrlfYLAlPP~~f~~v~~~L~~~~l~~~gw~RIVvEKPFG~Dl~SA~~Ln~~ 276 (604)
T PLN02333 197 YHSGQYDSQEHFAELDKKLKEHEGGRVSNRLFYLSIPPNIFVDAVKCASSSASSVNGWTRVIVEKPFGRDSESSAALTKS 276 (604)
T ss_pred EEecCCCCHHHHHHHHHHHHHhhcCCCccEEEEEECCHHHHHHHHHHHHHhCCCcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 00011232 22333221 1137899999988666655443311 12 4799999999999999999888
Q ss_pred HH
Q 017143 123 AR 124 (376)
Q Consensus 123 a~ 124 (376)
..
T Consensus 277 L~ 278 (604)
T PLN02333 277 LK 278 (604)
T ss_pred HH
Confidence 73
No 423
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.86 E-value=4.2 Score=37.90 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=56.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CCH-H---HHhhCCCCCEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PGH-Q---ELLDSGLCDVV 78 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~-~---~~l~~~~~D~V 78 (376)
-+|.|.|+|.+|...+...+.. +.+.+.+.++++++. ++++++|.+ .+. .++ + ++.....+|+|
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~---G~~~v~~~~~~~~~~----~~~~~~g~~-~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLR---GAGRIIAVGSRPNRV----ELAKEYGAT-DIVDYKNGDVVEQILKLTGGKGVDAV 239 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCHHHH----HHHHHcCCc-eEecCCCCCHHHHHHHHhCCCCCcEE
Confidence 4788999999988766555544 675444566666533 444566754 222 122 2 22323458999
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
+-++........+.++++. .|+-|.+
T Consensus 240 ld~~g~~~~~~~~~~~l~~-~G~~v~~ 265 (351)
T cd08285 240 IIAGGGQDTFEQALKVLKP-GGTISNV 265 (351)
T ss_pred EECCCCHHHHHHHHHHhhc-CCEEEEe
Confidence 9998876677888888874 3666654
No 424
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.84 E-value=0.3 Score=44.91 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=26.4
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
.+||+|||+|.+|....-.|.+. +.+|+ +++++.+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~---G~~V~-lv~r~~~ 36 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA---GLPVR-LILRDRQ 36 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC---CCCeE-EEEechH
Confidence 46899999999999887777764 55655 4566655
No 425
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.81 E-value=6.1 Score=36.93 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=54.6
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCc--c---CCHHHHhhC---CCCCE
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV--F---PGHQELLDS---GLCDV 77 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~l~~---~~~D~ 77 (376)
-+|.|.|+ |.+|...+...+.. +.+++++ +.+++ +.+.+.+++|.. .+ | +++.+.+.. ..+|+
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~-~~~~~---k~~~~~~~lGa~-~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH---GCYVVGS-AGSSQ---KVDLLKNKLGFD-EAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc---CCEEEEE-cCCHH---HHHHHHHhcCCC-EEEECCCcccHHHHHHHHCCCCcEE
Confidence 47899998 88998776655554 7787764 45555 333333356765 22 2 144443322 25899
Q ss_pred EEEeCCCCccHHHHHHHHcCCCCCeEEE
Q 017143 78 VVVSTPNMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 78 V~i~t~~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
|+-++.. .....+..+++. .|+-|++
T Consensus 232 v~d~vG~-~~~~~~~~~l~~-~G~iv~~ 257 (348)
T PLN03154 232 YFDNVGG-DMLDAALLNMKI-HGRIAVC 257 (348)
T ss_pred EEECCCH-HHHHHHHHHhcc-CCEEEEE
Confidence 9988875 456777788874 3655554
No 426
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=91.73 E-value=0.54 Score=42.85 Aligned_cols=62 Identities=24% Similarity=0.463 Sum_probs=47.4
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
.+||+|+|.+|..-...++.. +..+++.-+..+. +.++.+|+. +-+++|++.. .|.|.+.+|
T Consensus 148 TLgvlG~GrIGseVA~r~k~~---gm~vI~~dpi~~~------~~~~a~gvq---~vsl~Eil~~--ADFitlH~P 209 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAM---GMHVIGYDPITPM------ALAEAFGVQ---LVSLEEILPK--ADFITLHVP 209 (406)
T ss_pred EEEEeecccchHHHHHHHHhc---CceEEeecCCCch------HHHHhccce---eeeHHHHHhh--cCEEEEccC
Confidence 689999999999988777776 7787765544443 334566764 5679999977 899999888
No 427
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.69 E-value=0.74 Score=42.18 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=40.7
Q ss_pred EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH--HH---hcCCC--CCccCCHHHHhhCCCCCEEEEe
Q 017143 9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL--AN---AFDWP--LKVFPGHQELLDSGLCDVVVVS 81 (376)
Q Consensus 9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--~~---~~~~~--~~~~~~~~~~l~~~~~D~V~i~ 81 (376)
|+|||+|.+|......++.. .-.+ +.++|++++.. ++..+ .. ..+.. +..++++++ +.+ .|+|+++
T Consensus 1 I~IIGaG~vG~~ia~~la~~--~l~e-V~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~d--ADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK--ELGD-VVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTNDYED-IAG--SDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC--CCcE-EEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCCHHH-hCC--CCEEEEe
Confidence 68999999999876666553 2125 45789987743 22221 11 11211 233467766 544 8999987
Q ss_pred CC
Q 017143 82 TP 83 (376)
Q Consensus 82 t~ 83 (376)
..
T Consensus 74 ~g 75 (300)
T cd01339 74 AG 75 (300)
T ss_pred cC
Confidence 64
No 428
>PRK06444 prephenate dehydrogenase; Provisional
Probab=91.66 E-value=0.33 Score=41.42 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=21.6
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEE
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVV 36 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~ 36 (376)
+|++|||. |.+|+.....+.+. ++.++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~---g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN---GLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC---CCEEE
Confidence 48999997 99999988877664 66653
No 429
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=91.63 E-value=3 Score=39.27 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=57.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C----CHHHHhh---CCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF--P----GHQELLD---SGLCD 76 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~---~~~~D 76 (376)
-+|.|+|+|.+|...+..++.. +. .++ +.++++++++ +++++|.+ .++ . ++.+.+. ...+|
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~---G~~~vi-~~~~~~~~~~----~~~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAA---GASRII-GIDINPDKFE----LAKKFGAT-DCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEE-EEeCCHHHHH----HHHHcCCC-EEEcccccchHHHHHHHHHhCCCCc
Confidence 4789999999999877766665 67 455 4566666433 33456654 222 1 2333222 12589
Q ss_pred EEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143 77 VVVVSTPNMTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E 106 (376)
+|+-++........+.++++.+.|+-|++-
T Consensus 259 ~vid~~g~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 259 YTFECIGNVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred EEEECCCChHHHHHHHHhhccCCCeEEEEc
Confidence 999998876677778888862125666554
No 430
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.58 E-value=2.5 Score=40.76 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=66.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCC----------hhhHHHHHHHHHhc-C-CC--C-----CccCCH
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPH----------LQSRQQALKLANAF-D-WP--L-----KVFPGH 66 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~----------~~~~~~~~~~~~~~-~-~~--~-----~~~~~~ 66 (376)
-.||+|=|.|..|...+..+.+. +.+|++|+|.+ .+.+....++.+.. + +. . ..|-+-
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~---GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~ 313 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQL---GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPG 313 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCC
Confidence 47999999999999888877775 99999999998 54332223322211 0 00 0 011123
Q ss_pred HHHhhCCCCCEEEEeC-CCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHH
Q 017143 67 QELLDSGLCDVVVVST-PNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120 (376)
Q Consensus 67 ~~~l~~~~~D~V~i~t-~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~ 120 (376)
++++.. ++|+.+=|. .+..+.+-+...++ .+..+.+|--=..+..++.++.
T Consensus 314 ~~~~~~-~cDI~iPcA~~n~I~~~~a~~l~~--~~ak~V~EgAN~p~t~eA~~~L 365 (454)
T PTZ00079 314 KKPWEV-PCDIAFPCATQNEINLEDAKLLIK--NGCKLVAEGANMPTTIEATHLF 365 (454)
T ss_pred cCcccC-CccEEEeccccccCCHHHHHHHHH--cCCeEEEecCCCCCCHHHHHHH
Confidence 344443 477766544 34577777777777 6677888864433333565554
No 431
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=91.54 E-value=7.3 Score=32.69 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=61.3
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHhhC-CCCCEEEEeCCC
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELLDS-GLCDVVVVSTPN 84 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~-~~~D~V~i~t~~ 84 (376)
++.=||+|. |.--+...... |..+++|| +++++..+..++=+++||++ + -+-.+.-+.|.+ +++|+|+|...
T Consensus 37 ~l~DIGaGt-Gsi~iE~a~~~--p~~~v~AI-e~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg- 111 (187)
T COG2242 37 RLWDIGAGT-GSITIEWALAG--PSGRVIAI-ERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG- 111 (187)
T ss_pred EEEEeCCCc-cHHHHHHHHhC--CCceEEEE-ecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC-
Confidence 567788763 22222223333 78898885 88888777777777888877 2 122344455554 46999999987
Q ss_pred CccHHHHHH----HHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143 85 MTHYQILMD----IINHPKPHHVLVEKPLCTTVADCKKVVDAA 123 (376)
Q Consensus 85 ~~h~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a 123 (376)
.+.+-+++ .|+ .|-.+.+- +.+++-...+.+.-
T Consensus 112 -~~i~~ile~~~~~l~--~ggrlV~n---aitlE~~~~a~~~~ 148 (187)
T COG2242 112 -GNIEEILEAAWERLK--PGGRLVAN---AITLETLAKALEAL 148 (187)
T ss_pred -CCHHHHHHHHHHHcC--cCCeEEEE---eecHHHHHHHHHHH
Confidence 33333333 344 33333332 34555555555555
No 432
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=91.51 E-value=1.1 Score=40.75 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=26.0
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCCh
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL 43 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~ 43 (376)
||.|||+|..|...+..|... ++.=+.++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~a---GVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW---GVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCCeEEEECCCE
Confidence 689999999999988888775 666566676643
No 433
>PRK07411 hypothetical protein; Validated
Probab=91.48 E-value=1.2 Score=42.38 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=30.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
.-||.|||+|..|...+..|... ++.-+.++|.|.-
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~---Gvg~l~lvD~D~v 73 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA---GIGRIGIVDFDVV 73 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCEe
Confidence 56999999999999999888886 7777778888653
No 434
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.41 E-value=0.52 Score=43.50 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=43.9
Q ss_pred CCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCccCC---HHHHhhCCCCCE
Q 017143 3 ANDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVFPG---HQELLDSGLCDV 77 (376)
Q Consensus 3 ~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~l~~~~~D~ 77 (376)
..++.||+|||+ |.+|......+... +...-+.++|++.. ...+.++..- ....+..+++ +.+.+++ .|+
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~--~~~~elvL~Di~~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~g--aDv 79 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQN--PHVSELSLYDIVGA-PGVAADLSHIDTPAKVTGYADGELWEKALRG--ADL 79 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcC--CCCCEEEEEecCCC-cccccchhhcCcCceEEEecCCCchHHHhCC--CCE
Confidence 346789999998 99999877777654 34444457777322 1122222210 0111222323 2455554 899
Q ss_pred EEEeCCC
Q 017143 78 VVVSTPN 84 (376)
Q Consensus 78 V~i~t~~ 84 (376)
|+++.-.
T Consensus 80 VVitaG~ 86 (321)
T PTZ00325 80 VLICAGV 86 (321)
T ss_pred EEECCCC
Confidence 9988764
No 435
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=91.37 E-value=0.54 Score=45.31 Aligned_cols=88 Identities=16% Similarity=0.048 Sum_probs=46.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH---HhhCCCCCEEEEeCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE---LLDSGLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~D~V~i~t~ 83 (376)
+||.|||.|......+..+++. ++...+.+ ++.... ....++.+.++ +.+.++ +....++|+|++..-
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~--~~~~~i~~-~~~n~g---~~~~~~~~~~~---~~d~~~l~~~~~~~~id~vi~~~e 71 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQS--PLVEKVYV-APGNAG---TALLAENVVID---VTDIEALVAFAKEEGIDLTVVGPE 71 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCCEEEE-eCCCHH---HHhhccccCCC---CCCHHHHHHHHHHhCCCEEEECCc
Confidence 5999999996555555555554 56554544 443221 11112222222 355555 444567999886543
Q ss_pred CCccHHHHHHHHcCCCCCeEEE
Q 017143 84 NMTHYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl~ 105 (376)
...-..++..+-+ .|.+++.
T Consensus 72 ~~l~~~~~~~l~~--~gi~~~g 91 (420)
T PRK00885 72 APLVAGIVDAFRA--AGLPIFG 91 (420)
T ss_pred hHHHHHHHHHHHH--CCCcEEC
Confidence 3332233334445 6777764
No 436
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.35 E-value=0.77 Score=41.67 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=47.1
Q ss_pred CceeEEEEeCChhhHH---HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----C---CH----HHHh
Q 017143 5 DTVKYGIIGMGMMGRE---HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----P---GH----QELL 70 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~---~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~---~~----~~~l 70 (376)
+++||+|.+.|. |.. .+.++... .-+.++++|....+ .++.+|+++|+|+..+ . ++ .+.+
T Consensus 88 ~~~ri~vl~Sg~-gsnl~al~~~~~~~-~~~~~i~~visn~~----~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l 161 (286)
T PRK06027 88 ERKRVVILVSKE-DHCLGDLLWRWRSG-ELPVEIAAVISNHD----DLRSLVERFGIPFHHVPVTKETKAEAEARLLELI 161 (286)
T ss_pred cCcEEEEEEcCC-CCCHHHHHHHHHcC-CCCcEEEEEEEcCh----hHHHHHHHhCCCEEEeccCccccchhHHHHHHHH
Confidence 578999999997 432 22222221 12688888876544 3667799999983211 1 12 3445
Q ss_pred hCCCCCEEEEeCCCC
Q 017143 71 DSGLCDVVVVSTPNM 85 (376)
Q Consensus 71 ~~~~~D~V~i~t~~~ 85 (376)
.+.++|+++++.-..
T Consensus 162 ~~~~~Dlivlagy~~ 176 (286)
T PRK06027 162 DEYQPDLVVLARYMQ 176 (286)
T ss_pred HHhCCCEEEEecchh
Confidence 566799999988644
No 437
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.35 E-value=0.8 Score=40.06 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH
Q 017143 1 MAANDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSR 46 (376)
Q Consensus 1 m~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 46 (376)
|..+++.+|.|+|. |.+|...+..|.+. +.+++.++.++....
T Consensus 1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~---g~~v~~~~~~~~~~~ 44 (249)
T PRK12825 1 MGSLMGRVALVTGAARGLGRAIALRLARA---GADVVVHYRSDEEAA 44 (249)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCCHHHH
Confidence 66666679999994 88999988888774 667776676665533
No 438
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=91.34 E-value=2.7 Score=41.63 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=68.1
Q ss_pred CceeEEEEeC-ChhhH-HHHHHhhhhc-----CCCcEEEEEeCCChhhH---HHH------------------HHHHHhc
Q 017143 5 DTVKYGIIGM-GMMGR-EHFINLHHLR-----SQGVSVVCIADPHLQSR---QQA------------------LKLANAF 56 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~-~~~~~~~~~~-----~~~~~~~~v~d~~~~~~---~~~------------------~~~~~~~ 56 (376)
.+.-+.|.|+ |-.++ ..+|+|.++. ++++.|+|+.-.+-+.. +.. .+|.+..
T Consensus 87 ~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~~s~e~fr~~v~~~l~~~~~~~~~~~~~~~~F~~~~ 166 (573)
T PLN02640 87 STLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTKLTDEELRDMISSTLTCRIDQRENCGDKMDQFLKRC 166 (573)
T ss_pred CCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHhhcccccccHHHHHHHHhcC
Confidence 4678889995 66665 5788876662 25899999774332211 111 1111110
Q ss_pred -----CCC-CCccCCHHHHhhC----C-CCCEEEEeCCCCccHHHHHHHHcCC---C-CCeEEEecCCCCCHHHHHHHHH
Q 017143 57 -----DWP-LKVFPGHQELLDS----G-LCDVVVVSTPNMTHYQILMDIINHP---K-PHHVLVEKPLCTTVADCKKVVD 121 (376)
Q Consensus 57 -----~~~-~~~~~~~~~~l~~----~-~~D~V~i~t~~~~h~~~~~~al~~~---~-g~~Vl~EKP~a~~~~e~~~l~~ 121 (376)
++. ...|..+.+.++. . .--+.++++||..-..++...-..+ . ..-|.+|||++.+.+.|++|-+
T Consensus 167 ~Y~~gd~~d~e~y~~L~~~l~~~e~~~~~nrifYLAvPP~~f~~i~~~L~~~~~~~~g~~RIVvEKPFG~DL~SA~~Ln~ 246 (573)
T PLN02640 167 FYHSGQYDSEEDFAELNKKLKEKEAGKLSNRLFYLSIPPNIFVDVVRCASLRASSENGWTRVIVEKPFGRDSESSGELTR 246 (573)
T ss_pred EEEeCCCCChHHHHHHHHHHHHhhcCCCCcEEEEEECCHHHHHHHHHHHHhccCCcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 000 0111222223322 1 1237889999987666554421111 1 2479999999999999999888
Q ss_pred HHH
Q 017143 122 AAR 124 (376)
Q Consensus 122 ~a~ 124 (376)
...
T Consensus 247 ~L~ 249 (573)
T PLN02640 247 CLK 249 (573)
T ss_pred HHH
Confidence 773
No 439
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=91.31 E-value=4.5 Score=38.04 Aligned_cols=135 Identities=14% Similarity=0.096 Sum_probs=72.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC------CHHH----HhhCCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP------GHQE----LLDSGLCD 76 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----~l~~~~~D 76 (376)
-+|.|+|+|.+|...+...+.. +++.+.++++++++++ +++++|.+ .+++ ++.+ +.. ..+|
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~---G~~~Vi~~~~~~~~~~----~~~~~ga~-~~i~~~~~~~~~~~~~~~~~~-~g~d 256 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIA---GASRIIGVDINEDKFE----KAKEFGAT-DFINPKDSDKPVSEVIREMTG-GGVD 256 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCHHHHH----HHHHcCCC-cEeccccccchHHHHHHHHhC-CCCC
Confidence 4789999999998776655554 6743334566666433 33456654 2221 1122 222 3589
Q ss_pred EEEEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc--CHHHHHHHHHHHcCC
Q 017143 77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY--MPPVAKLIQIVKSGS 154 (376)
Q Consensus 77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~--~p~~~~~k~~i~~g~ 154 (376)
+|+-++........+.++++.+.|+-|.+--+..... +.. ..+.. . ++.+.-.+...| ...+..+.+++.+|.
T Consensus 257 ~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~-~~~~~-~--~~~i~g~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T cd08277 257 YSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAEL-SIR-PFQLI-L--GRTWKGSFFGGFKSRSDVPKLVSKYMNKK 331 (365)
T ss_pred EEEECCCChHHHHHHHHhcccCCCEEEEEcCCCcccc-ccC-HhHHh-h--CCEEEeeecCCCChHHHHHHHHHHHHCCC
Confidence 9999887666667777788522266666644321100 000 11222 1 223332223333 234667778888775
Q ss_pred C
Q 017143 155 I 155 (376)
Q Consensus 155 i 155 (376)
+
T Consensus 332 ~ 332 (365)
T cd08277 332 F 332 (365)
T ss_pred c
Confidence 4
No 440
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.25 E-value=2.4 Score=39.89 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=87.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHH-HHHHH-------------------hcCCCCCccCCH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-LKLAN-------------------AFDWPLKVFPGH 66 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~-------------------~~~~~~~~~~~~ 66 (376)
=+|.|+|+|..+-+.+..+.+. .-.-++++.|...+.+.. +++.+ +.-++ ..|+++
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~---~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id-~~~~~~ 77 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKH---GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTID-HVFQDY 77 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhc---cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhh-HhhcCH
Confidence 3789999999998877777765 333467777755533222 22222 11233 567888
Q ss_pred HHHhhCCCCCEEEEeCCCCccHHHHHH----HHcCCCCCeEEEecCCCCCHHHH--------------------------
Q 017143 67 QELLDSGLCDVVVVSTPNMTHYQILMD----IINHPKPHHVLVEKPLCTTVADC-------------------------- 116 (376)
Q Consensus 67 ~~~l~~~~~D~V~i~t~~~~h~~~~~~----al~~~~g~~Vl~EKP~a~~~~e~-------------------------- 116 (376)
+++..+ -|.+|.|||.+.-.++..+ .|+ .-|+|.+=-|---+--=.
T Consensus 78 ~~i~g~--WdtlILavtaDAY~~VL~ql~~~~L~--~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~ 153 (429)
T PF10100_consen 78 EEIEGE--WDTLILAVTADAYLDVLQQLPWEVLK--RVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWS 153 (429)
T ss_pred HHhccc--ccEEEEEechHHHHHHHHhcCHHHHh--hCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceec
Confidence 888765 8999999998877666554 577 678877766643332222
Q ss_pred ------HHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHc
Q 017143 117 ------KKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKS 152 (376)
Q Consensus 117 ------~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~ 152 (376)
+-|..+. + .++++|.++--++....++.+++.
T Consensus 154 d~~~~~~vlt~~v-K---~kiYigSt~~~s~~~~~l~~~~~~ 191 (429)
T PF10100_consen 154 DGEQPNRVLTTAV-K---KKIYIGSTHSNSPELDKLCRLLAQ 191 (429)
T ss_pred cCCCcceehhhhh-h---ceEEEEeCCCCChHHHHHHHHHHH
Confidence 2233333 2 257888888888888998888874
No 441
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=91.20 E-value=1.2 Score=42.78 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=27.5
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCc-----EEEEEeCCChh
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGV-----SVVCIADPHLQ 44 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~-----~~~~v~d~~~~ 44 (376)
||.|||+|.+|-..++.|+.. |+ .-+.|+|.|.-
T Consensus 1 kVlvVGaGGlGcE~lKnLal~---Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM---GVGTGESGEITVTDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCCcCCCCeEEEECCCCc
Confidence 689999999999999998886 66 45557887653
No 442
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.16 E-value=1.4 Score=40.53 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=28.9
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
||.|||+|.+|...++.|... ++.-+.++|.|.-
T Consensus 1 kVlIVGaGGlG~EiaKnLal~---Gvg~ItIvD~D~V 34 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT---GFGEIHIIDLDTI 34 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh---cCCeEEEEcCCCc
Confidence 689999999999999999876 7777778887654
No 443
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.05 E-value=0.76 Score=40.73 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=51.8
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHHhhC-CCCCEEEEeC
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQELLDS-GLCDVVVVST 82 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~~D~V~i~t 82 (376)
.+.++.|+|.|..+....+....+ +|+++ |+|.+++. +.. ..+ +.....+...++.+.. +.-++|+|.|
T Consensus 99 p~~~L~IfGaG~va~~la~la~~l---Gf~V~-v~D~R~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~t 169 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPL---PCRVT-WVDSREAE---FPE--DLPDGVATLVTDEPEAEVAEAPPGSYFLVLT 169 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcC---CCEEE-EEeCCccc---ccc--cCCCCceEEecCCHHHHHhcCCCCcEEEEEe
Confidence 468999999999998877766665 89988 66765541 110 011 1111223446666653 2358999999
Q ss_pred CCCccHHHHH-HHHc
Q 017143 83 PNMTHYQILM-DIIN 96 (376)
Q Consensus 83 ~~~~h~~~~~-~al~ 96 (376)
.++.+-..++ .+|+
T Consensus 170 h~h~~D~~~L~~aL~ 184 (246)
T TIGR02964 170 HDHALDLELCHAALR 184 (246)
T ss_pred CChHHHHHHHHHHHh
Confidence 8777654444 4553
No 444
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.03 E-value=0.44 Score=44.15 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=44.5
Q ss_pred CceeEEEEeC-ChhhHHHHHHhhhhc----CCCcEEEEEeCCChhhHHHHH----HHHH----hcCCCCCccCCHHHHhh
Q 017143 5 DTVKYGIIGM-GMMGREHFINLHHLR----SQGVSVVCIADPHLQSRQQAL----KLAN----AFDWPLKVFPGHQELLD 71 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~~~~----~~~~~~~~v~d~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~l~ 71 (376)
+++||+|+|+ |++|...+..+.... +.+.+|+ +.|+.+.. ++++ ++.. ..+ .+....++.+.++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~-L~D~~~~~-~~~~g~~~Dl~d~~~~~~~-~~~~~~~~~~~l~ 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILH-LLDIPPAL-KALEGVVMELQDCAFPLLK-SVVATTDPEEAFK 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEE-EEEcCCcc-ccccceeeehhhccccccC-CceecCCHHHHhC
Confidence 3689999998 999998888777641 0224666 45775421 1121 1110 011 1223467666776
Q ss_pred CCCCCEEEEeCCC
Q 017143 72 SGLCDVVVVSTPN 84 (376)
Q Consensus 72 ~~~~D~V~i~t~~ 84 (376)
+ .|+|+++.-.
T Consensus 78 ~--aDiVI~tAG~ 88 (325)
T cd01336 78 D--VDVAILVGAM 88 (325)
T ss_pred C--CCEEEEeCCc
Confidence 5 8999987653
No 445
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=90.98 E-value=4.6 Score=33.88 Aligned_cols=109 Identities=9% Similarity=0.057 Sum_probs=62.1
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
..+|.=||||. |..-+...... ++.++++ +|.+++..+.+++.+++.+++ + -...+.+++.....+|+|+...
T Consensus 43 ~~~vLDiGcGt-G~~s~~la~~~--~~~~V~~-iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~- 117 (181)
T TIGR00138 43 GKKVIDIGSGA-GFPGIPLAIAR--PELKLTL-LESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA- 117 (181)
T ss_pred CCeEEEecCCC-CccHHHHHHHC--CCCeEEE-EeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-
Confidence 35888999984 32111111222 5677776 599988666666666666654 2 2235676654445689876543
Q ss_pred CCccH----HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHH
Q 017143 84 NMTHY----QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAA 123 (376)
Q Consensus 84 ~~~h~----~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a 123 (376)
-.+. +.+.+.|+ .|-.++++.+ .....++..+.+.+
T Consensus 118 -~~~~~~~~~~~~~~Lk--pgG~lvi~~~-~~~~~~~~~~~e~~ 157 (181)
T TIGR00138 118 -LASLNVLLELTLNLLK--VGGYFLAYKG-KKYLDEIEEAKRKC 157 (181)
T ss_pred -hhCHHHHHHHHHHhcC--CCCEEEEEcC-CCcHHHHHHHHHhh
Confidence 1222 22344566 3444555553 34667777776665
No 446
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.90 E-value=2 Score=38.07 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=29.6
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
.-||+|||+|..|...+..|... ++.-+.++|.|.-
T Consensus 32 ~~~VliiG~GglGs~va~~La~~---Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA---GVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCEE
Confidence 46999999999999999888886 6666668887754
No 447
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=90.88 E-value=1.2 Score=43.25 Aligned_cols=86 Identities=24% Similarity=0.279 Sum_probs=53.6
Q ss_pred eEEEEeCChhhHH-HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC-CHHHHhhCCCCCEEEEeCCCC
Q 017143 8 KYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP-GHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 8 ~v~iiG~G~~g~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~D~V~i~t~~~ 85 (376)
+|-+||.|..|.. .+..|++ .+.+++ ++|..... ...++ ++.|+. .+. .-.+.+. ++|+|+++.--.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~---~G~~v~-~~D~~~~~--~~~~l-~~~gi~--~~~g~~~~~~~--~~d~vV~spgi~ 69 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN---RGYQVS-GSDIAENA--TTKRL-EALGIP--IYIGHSAENLD--DADVVVVSAAIK 69 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH---CCCeEE-EECCCcch--HHHHH-HHCcCE--EeCCCCHHHCC--CCCEEEECCCCC
Confidence 4789999999987 5555555 488876 58876542 23333 345765 332 2234444 389877654434
Q ss_pred ccHHHHHHHHcCCCCCeEEEe
Q 017143 86 THYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~E 106 (376)
...+...+|.+ +|++|+-|
T Consensus 70 ~~~p~~~~a~~--~~i~v~~~ 88 (448)
T TIGR01082 70 DDNPEIVEAKE--RGIPVIRR 88 (448)
T ss_pred CCCHHHHHHHH--cCCceEeH
Confidence 44466777888 78888744
No 448
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.87 E-value=0.35 Score=44.77 Aligned_cols=76 Identities=9% Similarity=0.147 Sum_probs=41.4
Q ss_pred CceeEEEEeC-ChhhHHHHHHhhhhcCCCcE-----EEEEeCCChhh--H-HHHHHHHHh---cCCCCCccCCHHHHhhC
Q 017143 5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVS-----VVCIADPHLQS--R-QQALKLANA---FDWPLKVFPGHQELLDS 72 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~-----~~~v~d~~~~~--~-~~~~~~~~~---~~~~~~~~~~~~~~l~~ 72 (376)
++.||+|||+ |.+|...+..+... .-+. -+.++|..+.. + ..+.++..- +.-.+..+.+..+.+++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d 78 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASG--EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKD 78 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc--cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCC
Confidence 4689999999 99999877766654 2232 34578885431 1 122222210 00001223333344444
Q ss_pred CCCCEEEEeCCC
Q 017143 73 GLCDVVVVSTPN 84 (376)
Q Consensus 73 ~~~D~V~i~t~~ 84 (376)
.|+|+|+.-.
T Consensus 79 --aDivvitaG~ 88 (322)
T cd01338 79 --ADWALLVGAK 88 (322)
T ss_pred --CCEEEEeCCC
Confidence 7999988653
No 449
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=90.87 E-value=5.2 Score=37.26 Aligned_cols=131 Identities=20% Similarity=0.259 Sum_probs=73.5
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C--CHHH----HhhCCCCCEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF--P--GHQE----LLDSGLCDVV 78 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~----~l~~~~~D~V 78 (376)
-+|.|.|.|.+|...+...+.. ++..+.++++++++.+ ++.++|.+ ..+ . ++.+ +.....+|+|
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~---G~~~v~~~~~~~~~~~----~~~~~ga~-~~i~~~~~~~~~~l~~~~~~~~~d~v 245 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAA---GASKIIVSEPSEARRE----LAEELGAT-IVLDPTEVDVVAEVRKLTGGGGVDVS 245 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCHHHHH----HHHHhCCC-EEECCCccCHHHHHHHHhCCCCCCEE
Confidence 4789999998888766655554 7733344566666433 33455654 111 1 2222 2222349999
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEEe---cCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCC
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLVE---KPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSI 155 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~E---KP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~i 155 (376)
+-++......+.+.++++.+ |+-+.+- .|...+ +.... .+ ++.+.-.+.. -...+..+.+++++|.|
T Consensus 246 id~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~------~~~~~-~~-~~~i~g~~~~-~~~~~~~~~~~~~~g~l 315 (351)
T cd08233 246 FDCAGVQATLDTAIDALRPR-GTAVNVAIWEKPISFN------PNDLV-LK-EKTLTGSICY-TREDFEEVIDLLASGKI 315 (351)
T ss_pred EECCCCHHHHHHHHHhccCC-CEEEEEccCCCCCccC------HHHHH-hh-CcEEEEEecc-CcchHHHHHHHHHcCCC
Confidence 99987666677788888742 5544442 222222 22233 22 3343322211 12467788888888887
No 450
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=90.82 E-value=1.3 Score=40.86 Aligned_cols=98 Identities=20% Similarity=0.191 Sum_probs=62.2
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH---hcC---CCCCccC-----------------
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN---AFD---WPLKVFP----------------- 64 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~---~~~---~~~~~~~----------------- 64 (376)
||||-|.|+||+..++++...+.+++++++|-|... .+...-+-+ -+| -++..-+
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~--~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~ 78 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTD--LEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASE 78 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCC--HHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEec
Confidence 799999999999988876653114799999998632 122222222 011 1111111
Q ss_pred -CHHHHhh-CCCCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEecC
Q 017143 65 -GHQELLD-SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKP 108 (376)
Q Consensus 65 -~~~~~l~-~~~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP 108 (376)
+.+++-. +.++|+|+-||......+.+..++++|+ |-|++--|
T Consensus 79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Ga-k~V~iSap 123 (327)
T TIGR01534 79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGA-KKVLISAP 123 (327)
T ss_pred CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCC-EEEEeCCC
Confidence 2222211 1269999999999999999999999552 66777666
No 451
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=90.72 E-value=15 Score=34.95 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=53.8
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC---------------------
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--------------------- 64 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 64 (376)
-+|.|.|. |.+|...+...+.. +++++++ ++++++.+ +++++|.. .+.+
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~---G~~vv~~-~~s~~~~~----~~~~~G~~-~~i~~~~~~~~~~~~~~~~~~~~~~ 265 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA---GANPVAV-VSSEEKAE----YCRALGAE-GVINRRDFDHWGVLPDVNSEAYTAW 265 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc---CCeEEEE-eCCHHHHH----HHHHcCCC-EEEcccccccccccccccchhhhhh
Confidence 48899997 99998877665554 7887765 56665333 33446642 1111
Q ss_pred -----C----HHHHhhCC-CCCEEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143 65 -----G----HQELLDSG-LCDVVVVSTPNMTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 65 -----~----~~~~l~~~-~~D~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E 106 (376)
+ +.++.... .+|+|+-++.. .....+.++++. .|.-|.+-
T Consensus 266 ~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~-~G~~v~~g 315 (393)
T cd08246 266 TKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDR-GGMVVICA 315 (393)
T ss_pred hhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhcc-CCEEEEEc
Confidence 0 11222223 58999887664 556777888875 36666663
No 452
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=90.70 E-value=5.3 Score=37.63 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=73.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C----CHHHHhh---CCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF--P----GHQELLD---SGLCD 76 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~---~~~~D 76 (376)
-+|.|+|+|.+|...+...+.. +. +++ +.++++++.+ +++++|.. ..+ . ++.+.+. ...+|
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~---G~~~vi-~~~~~~~~~~----~~~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~~~d 259 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIR---GASRII-GVDLNPSKFE----QAKKFGVT-EFVNPKDHDKPVQEVIAEMTGGGVD 259 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEE-EEcCCHHHHH----HHHHcCCc-eEEcccccchhHHHHHHHHhCCCCC
Confidence 4789999999999877766654 66 555 4566666433 34556654 222 1 2322222 12589
Q ss_pred EEEEeCCCCccHHHHHHHHcCCCCCeEEEec-----CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccC--HHHHHHHHH
Q 017143 77 VVVVSTPNMTHYQILMDIINHPKPHHVLVEK-----PLCTTVADCKKVVDAARKRPDILVQVGLEYRYM--PPVAKLIQI 149 (376)
Q Consensus 77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~EK-----P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~--p~~~~~k~~ 149 (376)
+|+-++........+.++++.+.|+-|++-- ++..+. .... . ++.+.-....+|. ..+..+.++
T Consensus 260 ~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~------~~~~-~--~~~i~g~~~~~~~~~~~~~~~~~~ 330 (369)
T cd08301 260 YSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHP------MNLL-N--GRTLKGTLFGGYKPKTDLPNLVEK 330 (369)
T ss_pred EEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCH------HHHh-c--CCeEEEEecCCCChHHHHHHHHHH
Confidence 9999987766777788888821145555432 222221 1122 1 3333332233332 356677788
Q ss_pred HHcCCC
Q 017143 150 VKSGSI 155 (376)
Q Consensus 150 i~~g~i 155 (376)
+.+|.+
T Consensus 331 ~~~g~~ 336 (369)
T cd08301 331 YMKKEL 336 (369)
T ss_pred HHcCCC
Confidence 887765
No 453
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.69 E-value=1.9 Score=42.36 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=32.2
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHH
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALK 51 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~ 51 (376)
.-|+.|+|+|.+|...+..++.+ +.. +-++|+++++++.++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l---GA~-V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL---GAI-VRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCE-EEEEeCCHHHHHHHHH
Confidence 46999999999999988888776 566 5568988875444443
No 454
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.69 E-value=0.45 Score=43.48 Aligned_cols=71 Identities=23% Similarity=0.254 Sum_probs=40.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-HHHHHHHH---hcCCCCCccCC--HHHHhhCCCCCEEEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-QQALKLAN---AFDWPLKVFPG--HQELLDSGLCDVVVV 80 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~---~~~~~~~~~~~--~~~~l~~~~~D~V~i 80 (376)
+||+|||+|.+|...+..+... .-..-..++|+.++.. ..+.++.. -.+.+.+.+.+ |+++ .+.|+|+|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~--~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~---~~aDiVvi 75 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ--GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDL---KGADIVVI 75 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc--cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhh---cCCCEEEE
Confidence 4899999999999877777333 2221344788875422 12222221 11222233333 5544 45899999
Q ss_pred eC
Q 017143 81 ST 82 (376)
Q Consensus 81 ~t 82 (376)
+.
T Consensus 76 tA 77 (313)
T COG0039 76 TA 77 (313)
T ss_pred eC
Confidence 88
No 455
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.54 E-value=0.57 Score=43.02 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=42.0
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCcc-C--CHHHHhhCCCCCEEEEe
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVF-P--GHQELLDSGLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~-~--~~~~~l~~~~~D~V~i~ 81 (376)
+||+|||+ |.+|...+..+... +-..-+.++|++ .....+.++..- ....++.+ . ++.+.+++ .|+|+|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~--~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~d--aDivvit 75 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN--PLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKG--ADVVVIP 75 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCC--CCEEEEe
Confidence 58999999 99999777666654 334445578887 222233344322 11112222 2 23344444 8999988
Q ss_pred CCC
Q 017143 82 TPN 84 (376)
Q Consensus 82 t~~ 84 (376)
.-.
T Consensus 76 aG~ 78 (310)
T cd01337 76 AGV 78 (310)
T ss_pred CCC
Confidence 754
No 456
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=90.47 E-value=0.78 Score=41.62 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=45.6
Q ss_pred CceeEEEEeCChhhHH---HHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCcc----CC---H----HHHh
Q 017143 5 DTVKYGIIGMGMMGRE---HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVF----PG---H----QELL 70 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~---~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~---~----~~~l 70 (376)
+++||+|.|.|. |.. .+.+++.. .-+.++++|....++ +..+|+++|+|+..+ .+ + .+.|
T Consensus 88 ~~~ri~vl~Sg~-g~nl~al~~~~~~~-~~~~~i~~visn~~~----~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l 161 (286)
T PRK13011 88 ARPKVLIMVSKF-DHCLNDLLYRWRIG-ELPMDIVGVVSNHPD----LEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVV 161 (286)
T ss_pred cCceEEEEEcCC-cccHHHHHHHHHcC-CCCcEEEEEEECCcc----HHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHH
Confidence 468999999994 432 22222221 135899998765443 666789999983221 12 2 2234
Q ss_pred hCCCCCEEEEeCCCC
Q 017143 71 DSGLCDVVVVSTPNM 85 (376)
Q Consensus 71 ~~~~~D~V~i~t~~~ 85 (376)
...++|+++++.-..
T Consensus 162 ~~~~~Dlivlagy~~ 176 (286)
T PRK13011 162 EESGAELVVLARYMQ 176 (286)
T ss_pred HHhCcCEEEEeChhh
Confidence 455699999887543
No 457
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=90.47 E-value=2.4 Score=36.15 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=45.3
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CC-ccCCHHHHhhC--CCCCEEEEe
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LK-VFPGHQELLDS--GLCDVVVVS 81 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~--~~~D~V~i~ 81 (376)
-+|.-+|+|. |..-+...... .+..++++ +|.+++..+.+++-++++++. +. ...+..+++.. +.+|+|++.
T Consensus 42 ~~vlDlG~Gt-G~~s~~~a~~~-~~~~~v~a-vD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 42 DMILDIGCGT-GSVTVEASLLV-GETGKVYA-VDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CEEEEeCCcC-CHHHHHHHHHh-CCCCEEEE-EECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 5789999986 65444433333 14567776 599998777777666677742 11 12455555442 458998885
Q ss_pred C
Q 017143 82 T 82 (376)
Q Consensus 82 t 82 (376)
.
T Consensus 119 ~ 119 (198)
T PRK00377 119 G 119 (198)
T ss_pred C
Confidence 4
No 458
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=90.40 E-value=1.2 Score=42.81 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=62.6
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHH-hhCCCCCEEEEeCCCCc
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQEL-LDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~D~V~i~t~~~~ 86 (376)
+|=+||.|.+|..-+..+... .+.+|.+ +|..... .-+..++.|++ .|...++- +.+ .|.|++.+--..
T Consensus 9 ~iHfIGIgG~GMsglA~iL~~--~G~~VsG-SD~~~~~---~t~~L~~~G~~--i~~gh~~~ni~~--~~~VV~s~Ai~~ 78 (459)
T COG0773 9 KIHFIGIGGIGMSGLAEILLN--LGYKVSG-SDLAESP---MTQRLEALGIE--IFIGHDAENILD--ADVVVVSNAIKE 78 (459)
T ss_pred eEEEEeeccccHHHHHHHHHh--CCCceEC-ccccccH---HHHHHHHCCCe--EeCCCCHHHcCC--CceEEEecccCC
Confidence 699999999988766655555 6999776 7877663 33344466876 55544433 443 566777666444
Q ss_pred cHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhC
Q 017143 87 HYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~ 126 (376)
--+-+..|++ +|.+|+- -++-|.++.+.+
T Consensus 79 ~NpEi~~A~e--~~ipi~~---------r~e~Laelm~~~ 107 (459)
T COG0773 79 DNPEIVAALE--RGIPVIS---------RAEMLAELMRFR 107 (459)
T ss_pred CCHHHHHHHH--cCCCeEc---------HHHHHHHHHhCC
Confidence 3455677888 8888752 344567777433
No 459
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=90.38 E-value=0.96 Score=43.67 Aligned_cols=145 Identities=12% Similarity=0.013 Sum_probs=70.3
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH---HhhCCCCCEEEEe
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE---LLDSGLCDVVVVS 81 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~D~V~i~ 81 (376)
+++||.|||.|..-...+..+.+. +....+.+.-.+.- ....+..+.++ --+.|.++ +..+..+|+|++.
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~--~~~~~~~~~pgn~g----~~~~~~~~~~~-~~~~d~~~l~~~a~~~~iD~Vv~g 75 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKS--NLLSELKVFPGNGG----FPDDELLPADS-FSILDKSSVQSFLKSNPFDLIVVG 75 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhC--CCCCEEEEECCchH----HhccccccccC-cCcCCHHHHHHHHHHcCCCEEEEC
Confidence 368999999996544445555554 55555544433332 11111111122 12345554 4445679999974
Q ss_pred CCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCCceEEE
Q 017143 82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV 161 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~ 161 (376)
.-...-..++..+-+ .|.+++-=.+.+...+.-+...+..-++.|++.. .+++......+++.+++ +|-+..+
T Consensus 76 ~E~~l~~glad~~~~--~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~---~~~~~~~~~ea~~~~~~--~~~PvVV 148 (426)
T PRK13789 76 PEDPLVAGFADWAAE--LGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTA---SYKTFTEYSSSLSYLES--EMLPIVI 148 (426)
T ss_pred CchHHHHHHHHHHHH--cCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCC---CeEeeCCHHHHHHHHHh--cCCCEEE
Confidence 433333445555556 6776542111111122222222222244577742 22333345556666653 5655555
Q ss_pred EE
Q 017143 162 AI 163 (376)
Q Consensus 162 ~~ 163 (376)
.-
T Consensus 149 Kp 150 (426)
T PRK13789 149 KA 150 (426)
T ss_pred Ee
Confidence 44
No 460
>PRK07877 hypothetical protein; Provisional
Probab=90.24 E-value=1.4 Score=45.38 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=58.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCCh------------------hhHHHHHHHHHhcC--CCCCcc-
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHL------------------QSRQQALKLANAFD--WPLKVF- 63 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~------------------~~~~~~~~~~~~~~--~~~~~~- 63 (376)
.-||+|||+| .|...+..|+.. ++ .-..++|.|. .+.+.+++..++.+ +.+..+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~Lara---GvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAE---GLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHc---cCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5799999998 899888888775 42 2233455432 22222222222222 112222
Q ss_pred -----CCHHHHhhCCCCCEEEEeCCCC-ccHHHHHHHHcCCCCCeEEEecC
Q 017143 64 -----PGHQELLDSGLCDVVVVSTPNM-THYQILMDIINHPKPHHVLVEKP 108 (376)
Q Consensus 64 -----~~~~~~l~~~~~D~V~i~t~~~-~h~~~~~~al~~~~g~~Vl~EKP 108 (376)
++++++++. +|+|+-|+.+. ..+.+...|.+ .|++++..-.
T Consensus 183 ~~i~~~n~~~~l~~--~DlVvD~~D~~~~R~~ln~~a~~--~~iP~i~~~~ 229 (722)
T PRK07877 183 DGLTEDNVDAFLDG--LDVVVEECDSLDVKVLLREAARA--RRIPVLMATS 229 (722)
T ss_pred ccCCHHHHHHHhcC--CCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcC
Confidence 257777765 89999999874 44555566788 8899888763
No 461
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.11 E-value=2 Score=42.41 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=52.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHHHHhhCCCCCEEEEeCC-C
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQELLDSGLCDVVVVSTP-N 84 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~D~V~i~t~-~ 84 (376)
.+|.|+|+|..|...+..|.+. +.+|. ++|...... ...++.+.. |+.+...+...+.+. ++|+|++... +
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~---G~~v~-~~D~~~~~~-~~~~L~~~~~~~~~~~g~~~~~~~~--~~d~vv~sp~I~ 80 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH---GARLR-VADTREAPP-NLAALRAELPDAEFVGGPFDPALLD--GVDLVALSPGLS 80 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHC---CCEEE-EEcCCCCch-hHHHHHhhcCCcEEEeCCCchhHhc--CCCEEEECCCCC
Confidence 4799999999998755555554 78876 578654321 122332221 332111122345554 3898877642 2
Q ss_pred Ccc---HHHHHHHHcCCCCCeEEEe
Q 017143 85 MTH---YQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 85 ~~h---~~~~~~al~~~~g~~Vl~E 106 (376)
..| .+...+|-+ .|++|+-+
T Consensus 81 ~~~~~~~~~~~~a~~--~~i~v~~~ 103 (498)
T PRK02006 81 PLEAALAPLVAAARE--RGIPVWGE 103 (498)
T ss_pred CcccccCHHHHHHHH--CCCcEEEH
Confidence 233 466777777 78888854
No 462
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=90.02 E-value=2.6 Score=38.76 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=51.9
Q ss_pred CCCCCceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh---------cCCCCCccCCHHHHh
Q 017143 1 MAANDTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA---------FDWPLKVFPGHQELL 70 (376)
Q Consensus 1 m~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l 70 (376)
|..+...+|+|-|+ |++|.+.+..|... |..|.|-+ |+++..++.+-+.+- +--++.-++++++.+
T Consensus 1 m~~~~~~~VcVTGAsGfIgswivk~LL~r---GY~V~gtV-R~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai 76 (327)
T KOG1502|consen 1 MDQDEGKKVCVTGASGFIGSWIVKLLLSR---GYTVRGTV-RDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI 76 (327)
T ss_pred CCCCCCcEEEEeCCchHHHHHHHHHHHhC---CCEEEEEE-cCcchhhhHHHHHhcccCcccceEEeccccccchHHHHH
Confidence 55556789999996 88999999988885 88988876 555532222112110 111134578888888
Q ss_pred hCCCCCEEE-EeCCC
Q 017143 71 DSGLCDVVV-VSTPN 84 (376)
Q Consensus 71 ~~~~~D~V~-i~t~~ 84 (376)
+- +|.|+ +++|.
T Consensus 77 ~g--cdgVfH~Asp~ 89 (327)
T KOG1502|consen 77 DG--CDGVFHTASPV 89 (327)
T ss_pred hC--CCEEEEeCccC
Confidence 76 89888 55553
No 463
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=90.02 E-value=0.98 Score=43.56 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=46.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHH---HhhCCCCCEEEEeCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQE---LLDSGLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~D~V~i~t~ 83 (376)
+||+|||.|..+...+.+++.. + ..+..++++.... .+ .....+-+. .-+.|.+. +.+..++|+|+....
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~--~-~~~~~~~~~~~~~--~~-~~~~~~~~~-~~~~d~~~l~~~~~~~~id~vi~~~e 73 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQS--P-LVKYVYVAPGNAG--TA-RLAKNKNVA-ISITDIEALVEFAKKKKIDLAVIGPE 73 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhC--C-CccEEEEECCCHH--Hh-hhccccccc-CCCCCHHHHHHHHHHhCCCEEEECCc
Confidence 5899999999988888877775 3 3333344444321 11 111111111 12345444 444567898875432
Q ss_pred CCccHHHHHHHHcCCCCCeEE
Q 017143 84 NMTHYQILMDIINHPKPHHVL 104 (376)
Q Consensus 84 ~~~h~~~~~~al~~~~g~~Vl 104 (376)
......++..+-+ .|.+++
T Consensus 74 ~~l~~~~~~~l~~--~gi~~~ 92 (423)
T TIGR00877 74 APLVLGLVDALEE--AGIPVF 92 (423)
T ss_pred hHHHHHHHHHHHH--CCCeEE
Confidence 2222233334444 566655
No 464
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=89.95 E-value=9.1 Score=35.98 Aligned_cols=133 Identities=15% Similarity=0.135 Sum_probs=74.8
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC------CH----HHHhhCCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP------GH----QELLDSGLCD 76 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~l~~~~~D 76 (376)
=+|.|.|.|.+|...+...+.. +...+.++++++++.+ ++.++|.. .+++ ++ .++.. ..+|
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~---G~~~v~~~~~~~~~~~----~~~~~g~~-~~v~~~~~~~~~~~~l~~~~~-~~~d 255 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAA---GASRIIAVDINKDKFE----KAKQLGAT-ECINPRDQDKPIVEVLTEMTD-GGVD 255 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCHHHHH----HHHHhCCC-eecccccccchHHHHHHHHhC-CCCc
Confidence 3788899999998876665554 6765556677766433 23456654 2221 22 12332 4589
Q ss_pred EEEEeCCCCccHHHHHHHHc-CCCCCeEEEec-----CCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHH
Q 017143 77 VVVVSTPNMTHYQILMDIIN-HPKPHHVLVEK-----PLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIV 150 (376)
Q Consensus 77 ~V~i~t~~~~h~~~~~~al~-~~~g~~Vl~EK-----P~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i 150 (376)
+|+-++........+.++++ . .|+-|.+-- +...+..+ + . ....+.-...........+..+.+++
T Consensus 256 ~vid~~g~~~~~~~~~~~l~~~-~G~~v~~g~~~~~~~~~~~~~~---~---~-~~~~l~g~~~~~~~~~~~~~~~~~l~ 327 (365)
T cd05279 256 YAFEVIGSADTLKQALDATRLG-GGTSVVVGVPPSGTEATLDPND---L---L-TGRTIKGTVFGGWKSKDSVPKLVALY 327 (365)
T ss_pred EEEECCCCHHHHHHHHHHhccC-CCEEEEEecCCCCCceeeCHHH---H---h-cCCeEEEEeccCCchHhHHHHHHHHH
Confidence 99998876567777888886 5 477666532 22223332 2 2 22121111111223345566677777
Q ss_pred HcCCCC
Q 017143 151 KSGSIG 156 (376)
Q Consensus 151 ~~g~iG 156 (376)
++|.+.
T Consensus 328 ~~~~l~ 333 (365)
T cd05279 328 RQKKFP 333 (365)
T ss_pred HcCCcc
Confidence 777665
No 465
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=89.95 E-value=7.1 Score=36.80 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=55.8
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHHHhcCCCCCcc--C----CHHHHhh---CCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLANAFDWPLKVF--P----GHQELLD---SGLCD 76 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~l~---~~~~D 76 (376)
-+|.|+|+|.+|...+...+.. +. ++++ +++++++++ +++++|.. ..+ . ++.+.+. ...+|
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~---G~~~Vi~-~~~~~~~~~----~a~~~Ga~-~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMA---KASRIIA-IDINPAKFE----LAKKLGAT-DCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEE-EcCCHHHHH----HHHHhCCC-eEEcccccchhHHHHHHHHhCCCCC
Confidence 4789999999998877665554 66 5654 577776443 33456654 222 1 2222221 12589
Q ss_pred EEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143 77 VVVVSTPNMTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E 106 (376)
+|+-++....-...+.++++.+.|+-|++=
T Consensus 258 ~vid~~G~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 258 YSFECIGNVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred EEEECCCCHHHHHHHHHHhhcCCCeEEEEe
Confidence 999998865566777888862115656554
No 466
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=89.92 E-value=5.2 Score=33.96 Aligned_cols=76 Identities=21% Similarity=0.128 Sum_probs=48.3
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-CccCCHHHHh----hCCCCCEEE
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVFPGHQELL----DSGLCDVVV 79 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l----~~~~~D~V~ 79 (376)
..++.=||||. |.......... ++..+++ +|.+++.++.+.+-+.+.+++ + -...|..+++ .+..+|.|+
T Consensus 17 ~~~ilDiGcG~-G~~~~~la~~~--p~~~v~g-vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 17 APLHLEIGCGK-GRFLIDMAKQN--PDKNFLG-IEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CceEEEeCCCc-cHHHHHHHHhC--CCCCEEE-EEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 46899999995 54433333444 7788887 588888776666655555544 2 2235666554 233589999
Q ss_pred EeCCCC
Q 017143 80 VSTPNM 85 (376)
Q Consensus 80 i~t~~~ 85 (376)
+.-|+.
T Consensus 93 ~~~pdp 98 (194)
T TIGR00091 93 LNFPDP 98 (194)
T ss_pred EECCCc
Confidence 887643
No 467
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=89.92 E-value=1.5 Score=40.63 Aligned_cols=76 Identities=11% Similarity=0.124 Sum_probs=52.8
Q ss_pred CceeEEEEeCC--hhhHHHHHHhhhhcCCCcEEEEEeCCC----hhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143 5 DTVKYGIIGMG--MMGREHFINLHHLRSQGVSVVCIADPH----LQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV 78 (376)
Q Consensus 5 ~~~~v~iiG~G--~~g~~~~~~~~~~~~~~~~~~~v~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V 78 (376)
+.+||++||-+ +..+..+..+..+ +++++-++-.. ++-.+++++.+++.|..+..++|++++++. .|+|
T Consensus 154 ~g~kia~vGD~~~~v~~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvv 228 (332)
T PRK04284 154 KDIKFTYVGDGRNNVANALMQGAAIM---GMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKG--SDVI 228 (332)
T ss_pred CCcEEEEecCCCcchHHHHHHHHHHc---CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 35899999975 4566667767665 88877655332 222345566666777655678999999987 8999
Q ss_pred EEeCCCC
Q 017143 79 VVSTPNM 85 (376)
Q Consensus 79 ~i~t~~~ 85 (376)
+.-+..+
T Consensus 229 y~~~w~~ 235 (332)
T PRK04284 229 YTDVWVS 235 (332)
T ss_pred EECCccc
Confidence 9866543
No 468
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.81 E-value=5.5 Score=41.25 Aligned_cols=142 Identities=17% Similarity=0.239 Sum_probs=81.1
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--------hcCC---------C-CCccCCHHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--------AFDW---------P-LKVFPGHQE 68 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--------~~~~---------~-~~~~~~~~~ 68 (376)
-||+|||+|.||......++.. +++|+ ++|++++.++++.+..+ +..+ . +...+++++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~---G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK---GTPIV-MKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH
Confidence 4799999999999988777764 88866 78999987655432211 1110 0 233456644
Q ss_pred HhhCCCCCEEEEeCCCCccHHH--HHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecc---------
Q 017143 69 LLDSGLCDVVVVSTPNMTHYQI--LMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEY--------- 137 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h~~~--~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~--------- 137 (376)
++ +.|+|+=+.+...-... ..+.-+......||.----++++.+ |.... .++...+-..|-.
T Consensus 390 -~~--~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~---ia~~~-~~p~r~ig~Hff~P~~~~~lvE 462 (714)
T TIGR02437 390 -FD--NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISL---LAKAL-KRPENFCGMHFFNPVHRMPLVE 462 (714)
T ss_pred -hc--CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhc-CCcccEEEEecCCCcccCceEe
Confidence 34 48999999998755332 2222221122356665555556665 55555 4444333222210
Q ss_pred -----ccCH-HHHHHHHHHHcCCCCceEEE
Q 017143 138 -----RYMP-PVAKLIQIVKSGSIGQVKMV 161 (376)
Q Consensus 138 -----r~~p-~~~~~k~~i~~g~iG~i~~~ 161 (376)
..+| .+..+.++++ .+|+.-.+
T Consensus 463 vv~g~~Ts~~~~~~~~~~~~--~lgk~pv~ 490 (714)
T TIGR02437 463 VIRGEKSSDETIATVVAYAS--KMGKTPIV 490 (714)
T ss_pred ecCCCCCCHHHHHHHHHHHH--HcCCEEEE
Confidence 1122 3566667766 47866444
No 469
>PLN02522 ATP citrate (pro-S)-lyase
Probab=89.79 E-value=2 Score=43.14 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=76.5
Q ss_pred ceeEEEEeCChhhHHHHHHhhhh----cCCCcEEEEEeCCChhhHHHHHHH--HH-hcCCCCCccCCHHHHhhCC-CCCE
Q 017143 6 TVKYGIIGMGMMGREHFINLHHL----RSQGVSVVCIADPHLQSRQQALKL--AN-AFDWPLKVFPGHQELLDSG-LCDV 77 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~----~~~~~~~~~v~d~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~-~~D~ 77 (376)
+-|-.|.|.+..+ ++.+... ..+.-.|.|++-+... ..+++ .+ ..++| +|++.+|+.+.. ++|+
T Consensus 10 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~iP--Vf~tv~eA~~~~~~~~~ 81 (608)
T PLN02522 10 TTQALFYNYKQLP---VQRMLDFDFLCGRETPSVAGIINPGSE---GFQKLFFGQEEIAIP--VHGSIEAACKAHPTADV 81 (608)
T ss_pred CceeEEEcCcHHH---HHhhhccceeccCCCCeeEEEEcCCCC---cceeEecCCEeeCcc--ccchHHHHHHhCCCCcE
Confidence 4677788887543 2222222 1145677788776554 22222 22 23777 999999999764 7999
Q ss_pred EEEeCCCCccHHHHHHHHcCCCCCe-EEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeec--cccCHH
Q 017143 78 VVVSTPNMTHYQILMDIINHPKPHH-VLVEKPLCTTVADCKKVVDAARKRPDILVQVGLE--YRYMPP 142 (376)
Q Consensus 78 V~i~t~~~~h~~~~~~al~~~~g~~-Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~--~r~~p~ 142 (376)
.+|..|+..-.+-+++++.+ +|.. +.|=- -.....+.++|.+.+++. |+. .+|.| --.+|.
T Consensus 82 ~vifvp~~~a~da~lEa~~a-~GIk~~VIit-eGfpe~d~~~l~~~Ar~~-g~r-lIGPNc~Gii~p~ 145 (608)
T PLN02522 82 FINFASFRSAAASSMEALKQ-PTIRVVAIIA-EGVPESDTKQLIAYARAN-NKV-VIGPATVGGIQAG 145 (608)
T ss_pred EEEeCChHHhHHHHHHHHhh-CCCCEEEEEC-CCCChhhHHHHHHHHHHc-CCE-EECCCCCeeEccC
Confidence 99999999989999988863 2443 33311 112234578899999554 654 34443 344443
No 470
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=89.70 E-value=2 Score=36.36 Aligned_cols=74 Identities=18% Similarity=0.024 Sum_probs=44.5
Q ss_pred eEEEEeC--ChhhHHHHHHhhhhcCCCcEEEEEe-CCChhhHHHHHHHHHhcCCCCCccC--C----------HHHHhhC
Q 017143 8 KYGIIGM--GMMGREHFINLHHLRSQGVSVVCIA-DPHLQSRQQALKLANAFDWPLKVFP--G----------HQELLDS 72 (376)
Q Consensus 8 ~v~iiG~--G~~g~~~~~~~~~~~~~~~~~~~v~-d~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~l~~ 72 (376)
||+|+-. |......+..+.+. .-.++++.|+ ++... .+.++++++|+|+..++ + +.+++.+
T Consensus 2 riail~sg~gs~~~~ll~~~~~~-~l~~~I~~vi~~~~~~---~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (190)
T TIGR00639 2 RIVVLISGNGSNLQAIIDACKEG-KIPASVVLVISNKPDA---YGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA 77 (190)
T ss_pred eEEEEEcCCChhHHHHHHHHHcC-CCCceEEEEEECCccc---hHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 5666655 66666666666553 1346777764 44332 56678889999832211 1 2344556
Q ss_pred CCCCEEEEeCCCC
Q 017143 73 GLCDVVVVSTPNM 85 (376)
Q Consensus 73 ~~~D~V~i~t~~~ 85 (376)
..+|+++++.-..
T Consensus 78 ~~~D~iv~~~~~~ 90 (190)
T TIGR00639 78 HEVDLVVLAGFMR 90 (190)
T ss_pred cCCCEEEEeCcch
Confidence 6799988887544
No 471
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=89.67 E-value=1.2 Score=38.18 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=43.6
Q ss_pred eeEEEE--eCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccC--C----------HHHHhhC
Q 017143 7 VKYGII--GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP--G----------HQELLDS 72 (376)
Q Consensus 7 ~~v~ii--G~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~l~~ 72 (376)
+||+|+ |-|......+.++.+.. ...+++.|+...++. .+.+++++.|+|+..++ + +.+.|+.
T Consensus 2 ~ki~vl~sg~gs~~~~ll~~~~~~~-~~~~I~~vvs~~~~~--~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (200)
T PRK05647 2 KRIVVLASGNGSNLQAIIDACAAGQ-LPAEIVAVISDRPDA--YGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDA 78 (200)
T ss_pred ceEEEEEcCCChhHHHHHHHHHcCC-CCcEEEEEEecCccc--hHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHH
Confidence 445555 55766666666665531 346777764433322 57788999999832211 1 1234555
Q ss_pred CCCCEEEEeCCC
Q 017143 73 GLCDVVVVSTPN 84 (376)
Q Consensus 73 ~~~D~V~i~t~~ 84 (376)
.++|+++++.-.
T Consensus 79 ~~~D~iv~~~~~ 90 (200)
T PRK05647 79 YQPDLVVLAGFM 90 (200)
T ss_pred hCcCEEEhHHhh
Confidence 679988886643
No 472
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=89.63 E-value=3.9 Score=31.32 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=45.4
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCcc-CCHHHHhh--CCCCCEEEEeC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVF-PGHQELLD--SGLCDVVVVST 82 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~--~~~~D~V~i~t 82 (376)
.+|.-+|+|. |.......... +..++++ +|.++...+.+++..++++.+ +... .+..+.+. ...+|+|++..
T Consensus 21 ~~vldlG~G~-G~~~~~l~~~~--~~~~v~~-vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGS-GSITIEAARLV--PNGRVYA-IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCC-CHHHHHHHHHC--CCceEEE-EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 4899999985 66544445554 5667765 699988777777666666554 2111 23332111 23589998865
Q ss_pred CC
Q 017143 83 PN 84 (376)
Q Consensus 83 ~~ 84 (376)
+.
T Consensus 97 ~~ 98 (124)
T TIGR02469 97 SG 98 (124)
T ss_pred cc
Confidence 43
No 473
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.62 E-value=5.4 Score=41.30 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=66.7
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--------hcCC----------CCCccCCHHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--------AFDW----------PLKVFPGHQE 68 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--------~~~~----------~~~~~~~~~~ 68 (376)
-||+|||+|.||......++.. .+++|+ ++|++++.++++.+..+ +..+ .+...++++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~--~G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK--AGLPVR-IKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR- 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHH--cCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-
Confidence 5799999999999888777744 588866 68999886655432211 1111 023456664
Q ss_pred HhhCCCCCEEEEeCCCCccHHH--HHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCC
Q 017143 69 LLDSGLCDVVVVSTPNMTHYQI--LMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD 128 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h~~~--~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~ 128 (376)
.+++ .|+|+=+.|...-... ..+.-+......||+----+.++.+ |.+.+ .+++
T Consensus 386 ~~~~--aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~---la~~~-~~p~ 441 (708)
T PRK11154 386 GFKH--ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ---IAAAA-ARPE 441 (708)
T ss_pred Hhcc--CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHHhc-Cccc
Confidence 3444 8999999997654332 2222121123357765555556665 55555 3434
No 474
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=89.50 E-value=0.29 Score=42.34 Aligned_cols=92 Identities=15% Similarity=0.282 Sum_probs=54.6
Q ss_pred CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-C-Ccc-----CCHHHHhhCCCCC
Q 017143 5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L-KVF-----PGHQELLDSGLCD 76 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~-~~~-----~~~~~~l~~~~~D 76 (376)
+++||+++|+ |..|+..+..+..+ |.+++..+..+..+ .+++. +++ . -.| .|...+-+...+|
T Consensus 18 k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvssrel~----Gqkl~---~ytk~eiqy~~lst~D~~klee~~avd 88 (340)
T KOG4354|consen 18 KDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVSSRELA----GQKLE---VYTKLEIQYADLSTVDAVKLEEPHAVD 88 (340)
T ss_pred CCceEEEEeccccchhhHHHHhcCC--CceEEEeeehhhhc----CCccc---CcchhheeecccchhhHHHhhcCCcee
Confidence 5799999997 77899999999999 99999998865332 22211 111 0 011 1222222223467
Q ss_pred EEEEeCCCCccHHHHHHHHcCCCCCeEEEe
Q 017143 77 VVVVSTPNMTHYQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 77 ~V~i~t~~~~h~~~~~~al~~~~g~~Vl~E 106 (376)
..+.+.|+..-..++. +++.-.||.++++
T Consensus 89 ~wvmaLPn~vckpfv~-~~~s~~gks~iid 117 (340)
T KOG4354|consen 89 HWVMALPNQVCKPFVS-LTESSDGKSRIID 117 (340)
T ss_pred eeeeecchhhHHHHHH-HHhhcCCceeeee
Confidence 7777777765444333 3332257777764
No 475
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.49 E-value=14 Score=34.21 Aligned_cols=140 Identities=15% Similarity=0.121 Sum_probs=77.1
Q ss_pred eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC-CCccCC--HHHHhh----CCCCCEE
Q 017143 7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKVFPG--HQELLD----SGLCDVV 78 (376)
Q Consensus 7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~l~----~~~~D~V 78 (376)
=+|.|.| +|.+|...+...+.. +..++++..++. +.+ ++.++|-+ +-.|.+ +.+-+. ...+|+|
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~---G~~~v~~~~s~~----k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKAL---GATVVAVVSSSE----KLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHc---CCcEEEEecCHH----HHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence 3688899 788988877766665 546666665543 334 56666654 112322 444333 2359999
Q ss_pred EEeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeecccc------CHHHHHHHHHHHc
Q 017143 79 VVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRY------MPPVAKLIQIVKS 152 (376)
Q Consensus 79 ~i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~------~p~~~~~k~~i~~ 152 (376)
+-+.-...... .+.+|+. .|+-|.|--+-....-... +.... .+ . ....+....+ .....++-+++++
T Consensus 216 ~D~vG~~~~~~-~l~~l~~-~G~lv~ig~~~g~~~~~~~-~~~~~-~~-~-~~~~g~~~~~~~~~~~~~~~~~l~~~~~~ 289 (326)
T COG0604 216 LDTVGGDTFAA-SLAALAP-GGRLVSIGALSGGPPVPLN-LLPLL-GK-R-LTLRGVTLGSRDPEALAEALAELFDLLAS 289 (326)
T ss_pred EECCCHHHHHH-HHHHhcc-CCEEEEEecCCCCCccccC-HHHHh-hc-c-EEEEEecceecchHHHHHHHHHHHHHHHc
Confidence 99988777766 5666653 4777776554310110111 22222 11 1 2222333222 3556667777777
Q ss_pred CCCCceEE
Q 017143 153 GSIGQVKM 160 (376)
Q Consensus 153 g~iG~i~~ 160 (376)
|.+=.+..
T Consensus 290 g~l~~~i~ 297 (326)
T COG0604 290 GKLKPVID 297 (326)
T ss_pred CCCcceec
Confidence 77655544
No 476
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=89.48 E-value=13 Score=34.39 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=75.2
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCC-------HHHHhhCCCCCEEE
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG-------HQELLDSGLCDVVV 79 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~D~V~ 79 (376)
-+|.|.|.|.+|...+..++.. ...+++++. +++++ .+ +.+++|++ ..++. +.++.....+|+|+
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~--g~~~v~~~~-~~~~~---~~-~~~~~g~~-~~~~~~~~~~~~i~~~~~~~~~dvvl 240 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRAL--TPATVIAVD-RSEEA---LK-LAERLGAD-HVLNASDDVVEEVRELTGGRGADAVI 240 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHh--CCCcEEEEe-CCHHH---HH-HHHHhCCc-EEEcCCccHHHHHHHHhCCCCCCEEE
Confidence 4689999998888776666665 337877654 45542 33 33566754 22221 22233334699999
Q ss_pred EeCCCCccHHHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCeEEEEeeccccCHHHHHHHHHHHcCCCC
Q 017143 80 VSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG 156 (376)
Q Consensus 80 i~t~~~~h~~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG 156 (376)
-++....+...+.++|.. .|+-+.+-.+-..+... ...- .+ ++.+. +........+..+.+++++|.+.
T Consensus 241 d~~g~~~~~~~~~~~l~~-~g~~i~~g~~~~~~~~~----~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~l~~g~l~ 309 (340)
T cd05284 241 DFVGSDETLALAAKLLAK-GGRYVIVGYGGHGRLPT----SDLV-PT-EISVI-GSLWGTRAELVEVVALAESGKVK 309 (340)
T ss_pred EcCCCHHHHHHHHHHhhc-CCEEEEEcCCCCCccCH----HHhh-hc-ceEEE-EEecccHHHHHHHHHHHHhCCCC
Confidence 998876677888888874 36555553221111111 1111 22 33322 22222334566777888887765
No 477
>PLN00106 malate dehydrogenase
Probab=89.43 E-value=0.75 Score=42.53 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=44.4
Q ss_pred ceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCC---ccCCHHHHhhCCCCCEEEE
Q 017143 6 TVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLK---VFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 6 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~l~~~~~D~V~i 80 (376)
+.||+|||+ |.+|......+... +.+.-+.++|+++ ....+.++..- ....+. ..+++.+.+.+ .|+|++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~--~~~~el~L~Di~~-~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~--aDiVVi 92 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMN--PLVSELHLYDIAN-TPGVAADVSHINTPAQVRGFLGDDQLGDALKG--ADLVII 92 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCCCEEEEEecCC-CCeeEchhhhCCcCceEEEEeCCCCHHHHcCC--CCEEEE
Confidence 579999999 99999888777755 4444455778866 21222232210 011112 23345666665 899998
Q ss_pred eCCC
Q 017143 81 STPN 84 (376)
Q Consensus 81 ~t~~ 84 (376)
+.-.
T Consensus 93 tAG~ 96 (323)
T PLN00106 93 PAGV 96 (323)
T ss_pred eCCC
Confidence 8653
No 478
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=89.43 E-value=1.9 Score=32.54 Aligned_cols=72 Identities=19% Similarity=0.053 Sum_probs=45.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--C-CccCCH-HHHhhCCCCCEEEEeC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--L-KVFPGH-QELLDSGLCDVVVVST 82 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~-~~~~~~-~~~l~~~~~D~V~i~t 82 (376)
-||.-||+|. |...+...+.. ++.++++ +|.+++..+.+++-..+.+.. + -...++ .+.-....+|+|++..
T Consensus 3 ~~vLDlGcG~-G~~~~~l~~~~--~~~~v~g-vD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGT-GRLSIALARLF--PGARVVG-VDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTT-SHHHHHHHHHH--TTSEEEE-EESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CEEEEEcCcC-CHHHHHHHhcC--CCCEEEE-EeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 5789999984 55444444445 7899887 599999887777666333332 2 123455 1122224589999877
No 479
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=89.31 E-value=1.6 Score=41.42 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=50.7
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHH---HHhhCCCCCEEEEeCCC
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ---ELLDSGLCDVVVVSTPN 84 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~D~V~i~t~~ 84 (376)
||+|||.|..|..++.+++++ ++++++ +|.++.. .+..++.++-+ .-+.|.+ ++.+..++|+|+....
T Consensus 1 kililG~g~~~~~l~~aa~~~---G~~v~~-~d~~~~~--~~~~~ad~~~~--~~~~d~~~l~~~~~~~~id~v~~~~e- 71 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL---GVEVIA-VDRYANA--PAMQVAHRSYV--INMLDGDALRAVIEREKPDYIVPEIE- 71 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCEEEE-EeCCCCC--chhhhCceEEE--cCCCCHHHHHHHHHHhCCCEEEeccC-
Confidence 799999999999998888776 888775 5666542 23344433211 1245644 4555556998865433
Q ss_pred CccHHHHHHHHcCCCCCeEE
Q 017143 85 MTHYQILMDIINHPKPHHVL 104 (376)
Q Consensus 85 ~~h~~~~~~al~~~~g~~Vl 104 (376)
......+..+-+ .|.+++
T Consensus 72 ~v~~~~~~~l~~--~g~~~~ 89 (380)
T TIGR01142 72 AIATDALFELEK--EGYFVV 89 (380)
T ss_pred ccCHHHHHHHHh--cCCeeC
Confidence 233333333334 565543
No 480
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=89.23 E-value=0.73 Score=42.42 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=41.4
Q ss_pred eeEEEEeC-ChhhHHHHHHhhhhcCCCc-EEEEEeCCChhhHHHHHHHH----H---hcCCC--CCccCCHHHHhhCCCC
Q 017143 7 VKYGIIGM-GMMGREHFINLHHLRSQGV-SVVCIADPHLQSRQQALKLA----N---AFDWP--LKVFPGHQELLDSGLC 75 (376)
Q Consensus 7 ~~v~iiG~-G~~g~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~~~~~----~---~~~~~--~~~~~~~~~~l~~~~~ 75 (376)
+||+|||+ |.+|...+..+... +.. +|+ ++|+.+ +.++++..+ . ..+.. +...+++++ +.+ .
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~--g~~~~v~-lvd~~~-~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~--a 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE--DVVKEIN-LISRPK-SLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG--S 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEE-EEECcc-cccccccccchhhhchhccCCCcEEEECCCHHH-hCC--C
Confidence 58999997 99999888887776 333 455 457643 111222111 1 12222 122346766 555 7
Q ss_pred CEEEEeCC
Q 017143 76 DVVVVSTP 83 (376)
Q Consensus 76 D~V~i~t~ 83 (376)
|+|+++..
T Consensus 74 DiViitag 81 (309)
T cd05294 74 DIVIITAG 81 (309)
T ss_pred CEEEEecC
Confidence 99998876
No 481
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.18 E-value=6.9 Score=40.45 Aligned_cols=113 Identities=22% Similarity=0.256 Sum_probs=66.3
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHH--------HhcCC---------C-CCccCCHHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLA--------NAFDW---------P-LKVFPGHQE 68 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~--------~~~~~---------~-~~~~~~~~~ 68 (376)
-||+|||+|.||......++.. .+++|+ ++|++++.++++.+.. ++..+ . +...+++++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~--~G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 381 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATK--AGIPVR-IKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG 381 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHH--cCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH
Confidence 5799999999999887777643 478866 7899988665442211 11111 0 234566753
Q ss_pred HhhCCCCCEEEEeCCCCccHHH--HHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCe
Q 017143 69 LLDSGLCDVVVVSTPNMTHYQI--LMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDI 129 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h~~~--~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~ 129 (376)
++ +.|+|+=+.|...-... ..+.-+.....-|+.----+.++.+ |.+.. .+++.
T Consensus 382 -~~--~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~---la~~~-~~p~r 437 (699)
T TIGR02440 382 -FK--DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQ---IAAAA-SRPEN 437 (699)
T ss_pred -hc--cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHhc-CCccc
Confidence 44 48999999998754332 2222221122356665555556665 55555 44343
No 482
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=89.12 E-value=1 Score=46.14 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=51.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhH-----HHHHHHHHhcCCCCCccCC-----HHHHhhCCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSR-----QQALKLANAFDWPLKVFPG-----HQELLDSGLCD 76 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~D 76 (376)
|||.++|++.+|...+..|.+. +.++++|+..-+.+. ...+++|++.|+|+....+ ..+.|.+..+|
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~---~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D 77 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAA---GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRELAPD 77 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHC---CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCC
Confidence 5899999999999888888763 789998885322111 1367889999998322222 23445556799
Q ss_pred EEEEeCCC
Q 017143 77 VVVVSTPN 84 (376)
Q Consensus 77 ~V~i~t~~ 84 (376)
+++++.-.
T Consensus 78 ~iv~~~~~ 85 (660)
T PRK08125 78 VIFSFYYR 85 (660)
T ss_pred EEEEcccc
Confidence 99887653
No 483
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=89.07 E-value=4.9 Score=34.80 Aligned_cols=67 Identities=25% Similarity=0.350 Sum_probs=38.7
Q ss_pred ceeEEEEeCChhhHHHHHHh-hhhc--CCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeC
Q 017143 6 TVKYGIIGMGMMGREHFINL-HHLR--SQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVST 82 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~-~~~~--~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t 82 (376)
.+|||||=+|++|...+-.| ...+ .+++++.-+.+-..-.-+.+. +....++++-+||.|++.+
T Consensus 2 vvKiGiiKlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~-------------~~~~~~~~~~~pDf~i~is 68 (277)
T PRK00994 2 VVKIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVE-------------EVVKKMLEEWKPDFVIVIS 68 (277)
T ss_pred eEEEEEEEecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHH-------------HHHHHHHHhhCCCEEEEEC
Confidence 58999999999997544433 2222 256775543332211111111 1133455556799999999
Q ss_pred CCC
Q 017143 83 PNM 85 (376)
Q Consensus 83 ~~~ 85 (376)
||.
T Consensus 69 PN~ 71 (277)
T PRK00994 69 PNP 71 (277)
T ss_pred CCC
Confidence 974
No 484
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=89.02 E-value=2.3 Score=41.41 Aligned_cols=90 Identities=13% Similarity=0.023 Sum_probs=52.9
Q ss_pred eEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCcc
Q 017143 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTH 87 (376)
Q Consensus 8 ~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~h 87 (376)
+|=+||.|.+|..-+..+... .+++|+ ++|..+... ....+ ++.|+.+..-.+.+.++. ++|+|+++.--...
T Consensus 1 ~~hfigigG~gm~~la~~l~~--~G~~V~-~~D~~~~~~-~~~~l-~~~gi~~~~~~~~~~~~~--~~d~vV~SpgI~~~ 73 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQ--LGHEVT-GSDANVYPP-MSTQL-EAQGIEIIEGFDAAQLEP--KPDLVVIGNAMKRG 73 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHh--CCCEEE-EECCCCCcH-HHHHH-HHCCCEEeCCCCHHHCCC--CCCEEEECCCCCCC
Confidence 356899999998766655555 689976 588765321 11233 345765111123344333 37877665533333
Q ss_pred HHHHHHHHcCCCCCeEEEe
Q 017143 88 YQILMDIINHPKPHHVLVE 106 (376)
Q Consensus 88 ~~~~~~al~~~~g~~Vl~E 106 (376)
.+...+|.+ .|++|+-|
T Consensus 74 ~~~~~~a~~--~~i~v~~~ 90 (448)
T TIGR01081 74 NPCVEAVLN--LNLPYTSG 90 (448)
T ss_pred CHHHHHHHH--CCCCEEeH
Confidence 456667778 78888755
No 485
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.93 E-value=3.9 Score=36.54 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=56.0
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcE-EEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVS-VVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
-++.|.|+|.+|...+...+.. +++ ++++ ++++++ .. +++++|........-+.......+|.|+.++...
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~---g~~~vi~~-~~~~~~---~~-~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~ 170 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAA---GAREVVGV-DPDAAR---RE-LAEALGPADPVAADTADEIGGRGADVVIEASGSP 170 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCcEEEE-CCCHHH---HH-HHHHcCCCccccccchhhhcCCCCCEEEEccCCh
Confidence 4688999999888876666665 566 6654 556553 32 5555662112222222333444699999888777
Q ss_pred ccHHHHHHHHcCCCCCeEEE
Q 017143 86 THYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~ 105 (376)
.+...+..+++. .|+-+.+
T Consensus 171 ~~~~~~~~~l~~-~g~~~~~ 189 (277)
T cd08255 171 SALETALRLLRD-RGRVVLV 189 (277)
T ss_pred HHHHHHHHHhcC-CcEEEEE
Confidence 778888888874 3555544
No 486
>PRK10637 cysG siroheme synthase; Provisional
Probab=88.87 E-value=1.9 Score=42.06 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=55.7
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCC--CCccCCHHHHhhCCCCCEEEEeCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP--LKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
..||.|||.|.+|.+-+..|... +.+++.|. +.-. +..++++++..+. -+-|. ++.++ +.++|++||.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~---ga~v~vis-p~~~--~~~~~l~~~~~i~~~~~~~~--~~dl~--~~~lv~~at~ 81 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDA---GARLTVNA-LAFI--PQFTAWADAGMLTLVEGPFD--ESLLD--TCWLAIAATD 81 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCEEEEEc-CCCC--HHHHHHHhCCCEEEEeCCCC--hHHhC--CCEEEEECCC
Confidence 47999999999998878777775 66766443 3322 1355565544443 12333 23344 4899999998
Q ss_pred CC-ccHHHHHHHHcCCCCCeEE
Q 017143 84 NM-THYQILMDIINHPKPHHVL 104 (376)
Q Consensus 84 ~~-~h~~~~~~al~~~~g~~Vl 104 (376)
+. ....+...|-+ +|+.|-
T Consensus 82 d~~~n~~i~~~a~~--~~~lvN 101 (457)
T PRK10637 82 DDAVNQRVSEAAEA--RRIFCN 101 (457)
T ss_pred CHHHhHHHHHHHHH--cCcEEE
Confidence 74 66666666766 666654
No 487
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=88.85 E-value=3.2 Score=35.91 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=56.0
Q ss_pred ceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCC
Q 017143 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 6 ~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~ 85 (376)
++.+++||+|..|+..+....+ ..++.-+|..++++ .++.+++-|+-|+.....-.|+ .++|++-+|..
T Consensus 10 ~v~~~~vgtgrl~ra~~~ra~h---~~~~cs~i~srS~~---~a~~LaE~~~a~p~d~~~~ael-----~~~vfv~vpd~ 78 (289)
T COG5495 10 RVVVGIVGTGRLGRAALLRADH---VVVACSAISSRSRD---RAQNLAETYVAPPLDVAKSAEL-----LLLVFVDVPDA 78 (289)
T ss_pred eeEEEEeecchHHHHHHHHhcc---hheeehhhhhcCHH---HHhhchhccCCCccchhhChhh-----hceEEecchHH
Confidence 6899999999999874433333 36888888888887 6777887776552111111111 35666666665
Q ss_pred ccHHHHHHHHcCCCCCeEEEecCCCC
Q 017143 86 THYQILMDIINHPKPHHVLVEKPLCT 111 (376)
Q Consensus 86 ~h~~~~~~al~~~~g~~Vl~EKP~a~ 111 (376)
.-...+-.-+. ++-.|.+--..+.
T Consensus 79 ~~s~vaa~~~~--rpg~iv~HcSga~ 102 (289)
T COG5495 79 LYSGVAATSLN--RPGTIVAHCSGAN 102 (289)
T ss_pred HHHHHHHhccc--CCCeEEEEccCCC
Confidence 44444444455 4555555544443
No 488
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.83 E-value=6.7 Score=40.69 Aligned_cols=112 Identities=16% Similarity=0.236 Sum_probs=66.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHH--------HHhcCCC----------CCccCCHHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKL--------ANAFDWP----------LKVFPGHQE 68 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--------~~~~~~~----------~~~~~~~~~ 68 (376)
-||+|||+|.||......++.. +++|+ ++|++++.++++.+. .++..+. ++..+++++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~---G~~V~-l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK---GVPVI-MKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC---CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH
Confidence 4799999999999887777764 88866 789999876544321 1111110 234566754
Q ss_pred HhhCCCCCEEEEeCCCCccH--HHHHHHHcCCCCCeEEEecCCCCCHHHHHHHHHHHHhCCCe
Q 017143 69 LLDSGLCDVVVVSTPNMTHY--QILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDI 129 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h~--~~~~~al~~~~g~~Vl~EKP~a~~~~e~~~l~~~a~~~~~~ 129 (376)
++ +.|+|+=+.|...-. ++..+.-+......|++----+.++.+ |.+.. .++..
T Consensus 390 -~~--~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~-~~p~r 445 (715)
T PRK11730 390 -FE--RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISL---LAKAL-KRPEN 445 (715)
T ss_pred -hc--CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhc-CCCcc
Confidence 44 489999999976543 333332221122346655555556665 55555 44443
No 489
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=88.78 E-value=1.4 Score=40.41 Aligned_cols=68 Identities=19% Similarity=0.083 Sum_probs=41.9
Q ss_pred EEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-------CCC-CCccCCHHHHhhCCCCCEEEE
Q 017143 9 YGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-------DWP-LKVFPGHQELLDSGLCDVVVV 80 (376)
Q Consensus 9 v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~l~~~~~D~V~i 80 (376)
|+|||+|.+|...+..++.. +-+.-+.++|+++++ ++..+..+ ... +...++++ .+++ .|+|+|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~--~~~~el~l~D~~~~~---~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~--aDiVIi 72 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK--GLASELVLVDVNEEK---AKGDALDLSHASAFLATGTIVRGGDYA-DAAD--ADIVVI 72 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCccH---HHHHHHhHHHhccccCCCeEEECCCHH-HhCC--CCEEEE
Confidence 58999999999877767665 444545688998874 33332211 111 11135565 4444 799999
Q ss_pred eCCC
Q 017143 81 STPN 84 (376)
Q Consensus 81 ~t~~ 84 (376)
+...
T Consensus 73 tag~ 76 (300)
T cd00300 73 TAGA 76 (300)
T ss_pred cCCC
Confidence 8764
No 490
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=88.76 E-value=2.2 Score=39.19 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=49.8
Q ss_pred CceeEEEEeC-ChhhHHHHHHhhhhcCCCcEEEEEeCC----ChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEE
Q 017143 5 DTVKYGIIGM-GMMGREHFINLHHLRSQGVSVVCIADP----HLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVV 79 (376)
Q Consensus 5 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~~~~~~v~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~ 79 (376)
+.++|++||- +...+..+..+... +++++-++-+ .+.-.+.+++++++.|..+..+++.++++++ .|+|+
T Consensus 147 ~g~~v~~vGd~~~v~~Sl~~~l~~~---g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy 221 (304)
T TIGR00658 147 KGVKVVYVGDGNNVCNSLMLAGAKL---GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIY 221 (304)
T ss_pred CCcEEEEEeCCCchHHHHHHHHHHc---CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 3589999996 55666777777776 6787755522 2222234455566667544578999999987 89999
Q ss_pred EeC
Q 017143 80 VST 82 (376)
Q Consensus 80 i~t 82 (376)
.-.
T Consensus 222 ~~~ 224 (304)
T TIGR00658 222 TDV 224 (304)
T ss_pred EcC
Confidence 854
No 491
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=88.67 E-value=0.73 Score=38.83 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=34.1
Q ss_pred CEEEEeCCCCccHHHHHHHHcCC--CC----CeEEEecCCCCCHHHHHHHHHHH
Q 017143 76 DVVVVSTPNMTHYQILMDIINHP--KP----HHVLVEKPLCTTVADCKKVVDAA 123 (376)
Q Consensus 76 D~V~i~t~~~~h~~~~~~al~~~--~g----~~Vl~EKP~a~~~~e~~~l~~~a 123 (376)
-+.++++||..=..++...-++| .+ .-|.+|||++.+.+.|++|-+..
T Consensus 107 rifYLAvPP~~f~~i~~~L~~~~l~~~~~g~~RiVvEKPFG~Dl~SA~~Ln~~l 160 (183)
T PF00479_consen 107 RIFYLAVPPSLFGPIARNLSEAGLNEEPNGWSRIVVEKPFGRDLESARELNDQL 160 (183)
T ss_dssp EEEEE-S-GGGHHHHHHHHHHHT-S-TSSS-EEEEESSTSTSSHHHHHHHHHHH
T ss_pred eEEEeccCHHHHHHHHHHHHHHhcccccCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 47889999987665555432211 23 46999999999999999999887
No 492
>PRK07236 hypothetical protein; Provisional
Probab=88.53 E-value=0.6 Score=44.38 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=33.0
Q ss_pred CCCCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 1 MAANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 1 m~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
|+.|++.+|+|||.|..|......|++. +++++ |+++.+.
T Consensus 1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~---G~~v~-v~E~~~~ 40 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGGLFAALLLRRA---GWDVD-VFERSPT 40 (386)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHhC---CCCEE-EEecCCC
Confidence 8888899999999999998888778775 78865 7777653
No 493
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=88.52 E-value=2.7 Score=40.03 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=50.6
Q ss_pred CceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhc-CCCCCccCCHH---HHhhCCCCCEEEE
Q 017143 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAF-DWPLKVFPGHQ---ELLDSGLCDVVVV 80 (376)
Q Consensus 5 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~l~~~~~D~V~i 80 (376)
++++|+|||.|..|..++.+++++ +++++. +|.++.. ....++.++ -++ +.|.+ ++++...+|+|+.
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~---G~~v~~-~~~~~~~--~~~~~ad~~~~~~---~~d~~~l~~~~~~~~id~vi~ 81 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRL---GVEVIA-VDRYANA--PAMQVAHRSHVID---MLDGDALRAVIEREKPDYIVP 81 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEE-EeCCCCC--chHHhhhheEECC---CCCHHHHHHHHHHhCCCEEEE
Confidence 357999999999999888887775 888774 5555542 222333332 222 34544 4555556998775
Q ss_pred eCCCCccHHHHHHHHcCCCCCeE
Q 017143 81 STPNMTHYQILMDIINHPKPHHV 103 (376)
Q Consensus 81 ~t~~~~h~~~~~~al~~~~g~~V 103 (376)
..-+ .....+..+.+ .|..+
T Consensus 82 ~~e~-~~~~~~~~l~~--~g~~~ 101 (395)
T PRK09288 82 EIEA-IATDALVELEK--EGFNV 101 (395)
T ss_pred eeCc-CCHHHHHHHHh--cCCee
Confidence 4433 22333334444 55554
No 494
>PLN02427 UDP-apiose/xylose synthase
Probab=88.48 E-value=1.7 Score=41.23 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=28.9
Q ss_pred CceeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChh
Q 017143 5 DTVKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQ 44 (376)
Q Consensus 5 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~ 44 (376)
+++||.|.| +|++|...+..|.+. .+.+|+++ +++.+
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l-~r~~~ 50 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLAL-DVYND 50 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEE-ecCch
Confidence 467999999 599999999888875 45788876 55544
No 495
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=88.48 E-value=21 Score=37.14 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=48.9
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHH--------hcCC----------CCCccCCHHH
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLAN--------AFDW----------PLKVFPGHQE 68 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~--------~~~~----------~~~~~~~~~~ 68 (376)
-||+|||+|.||......++.. +++|+ ++|++++.++++.+..+ +..+ .+...+++++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~---G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK---GLKTV-LKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC---CCcEE-EecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 5799999999999887777664 88876 78999987655432211 1111 0234566754
Q ss_pred HhhCCCCCEEEEeCCCCcc
Q 017143 69 LLDSGLCDVVVVSTPNMTH 87 (376)
Q Consensus 69 ~l~~~~~D~V~i~t~~~~h 87 (376)
+++ .|+|+=+.+.+.-
T Consensus 412 -~~~--aDlViEAv~E~l~ 427 (737)
T TIGR02441 412 -FKN--ADMVIEAVFEDLS 427 (737)
T ss_pred -hcc--CCeehhhccccHH
Confidence 443 7888888776544
No 496
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=88.29 E-value=0.68 Score=42.11 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=39.0
Q ss_pred eeEEEEe-CChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCC
Q 017143 7 VKYGIIG-MGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTP 83 (376)
Q Consensus 7 ~~v~iiG-~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~ 83 (376)
|||.|+| .|.+|......+... +++++++ ++. ++++ .-.+.+.+++.+.+||+|+.|.-
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~---~~~v~~~-~r~------------~~dl--~d~~~~~~~~~~~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER---GYEVIAT-SRS------------DLDL--TDPEAVAKLLEAFKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT---SEEEEEE-STT------------CS-T--TSHHHHHHHHHHH--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhhC---CCEEEEe-Cch------------hcCC--CCHHHHHHHHHHhCCCeEeccce
Confidence 7999999 599999888777764 7888876 443 2222 24456677888767999998863
No 497
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=88.28 E-value=0.66 Score=50.24 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=46.5
Q ss_pred CCCC-CceeEEEEeCChh-----------hHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHh-cCCCCCccCCHH
Q 017143 1 MAAN-DTVKYGIIGMGMM-----------GREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-FDWPLKVFPGHQ 67 (376)
Q Consensus 1 m~~~-~~~~v~iiG~G~~-----------g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 67 (376)
||.. +..||.|||.|.+ |...+++|++. +++++.+ +.++.....-..++.. |-.| ...+.+.
T Consensus 1 m~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~---G~~vi~v-~~np~~~~~d~~~ad~~y~ep-~~~e~l~ 75 (1068)
T PRK12815 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE---GYQVVLV-NPNPATIMTDPAPADTVYFEP-LTVEFVK 75 (1068)
T ss_pred CCCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc---CCEEEEE-eCCcchhhcCcccCCeeEECC-CCHHHHH
Confidence 6654 3479999999985 45677777775 9998865 6666421110111111 1111 1123456
Q ss_pred HHhhCCCCCEEEEeCCCC
Q 017143 68 ELLDSGLCDVVVVSTPNM 85 (376)
Q Consensus 68 ~~l~~~~~D~V~i~t~~~ 85 (376)
++++..++|+|+.....+
T Consensus 76 ~ii~~e~~D~Iip~~gg~ 93 (1068)
T PRK12815 76 RIIAREKPDALLATLGGQ 93 (1068)
T ss_pred HHHHHhCcCEEEECCCCc
Confidence 666777899988754433
No 498
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=88.25 E-value=3.6 Score=37.70 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=56.6
Q ss_pred eeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEEEEeCCCCc
Q 017143 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMT 86 (376)
Q Consensus 7 ~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~t~~~~ 86 (376)
=+|.|.|+|.+|...+..++.. +++++++ +.++++. ++++++|.. .. .++++......+|+|+-++....
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~---G~~vi~~-~~~~~~~----~~~~~~g~~-~~-~~~~~~~~~~~~d~vid~~g~~~ 226 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALT---GPDVVLV-GRHSEKL----ALARRLGVE-TV-LPDEAESEGGGFDVVVEATGSPS 226 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEE-cCCHHHH----HHHHHcCCc-EE-eCccccccCCCCCEEEECCCChH
Confidence 4788999999998876666554 7887655 4555532 333447765 22 22222233345999999987777
Q ss_pred cHHHHHHHHcCCCCCeEEE
Q 017143 87 HYQILMDIINHPKPHHVLV 105 (376)
Q Consensus 87 h~~~~~~al~~~~g~~Vl~ 105 (376)
..+.+.++++ .+-++.+
T Consensus 227 ~~~~~~~~l~--~~g~~v~ 243 (319)
T cd08242 227 GLELALRLVR--PRGTVVL 243 (319)
T ss_pred HHHHHHHHhh--cCCEEEE
Confidence 7888888998 5445554
No 499
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=88.03 E-value=2.5 Score=39.22 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=50.6
Q ss_pred CceeEEEEeCC--hhhHHHHHHhhhhcCCCcEEEEEeCCC----hhhHHHHHHHHHhcCCCCCccCCHHHHhhCCCCCEE
Q 017143 5 DTVKYGIIGMG--MMGREHFINLHHLRSQGVSVVCIADPH----LQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVV 78 (376)
Q Consensus 5 ~~~~v~iiG~G--~~g~~~~~~~~~~~~~~~~~~~v~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V 78 (376)
+.+||++||-+ ...+..+..+..+ +++++-++-.. ++-.+.++++++..|..+..+++.+++++. .|+|
T Consensus 154 ~g~~va~vGd~~~~v~~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvv 228 (331)
T PRK02102 154 KGLKLAYVGDGRNNMANSLMVGGAKL---GMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKG--ADVI 228 (331)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHc---CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 35899999986 4556667777766 67877555322 222244556666677655578999999987 8999
Q ss_pred EEeCC
Q 017143 79 VVSTP 83 (376)
Q Consensus 79 ~i~t~ 83 (376)
+.-+.
T Consensus 229 yt~~w 233 (331)
T PRK02102 229 YTDVW 233 (331)
T ss_pred EEcCc
Confidence 98644
No 500
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=88.02 E-value=2.9 Score=42.06 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=53.5
Q ss_pred CCCceeEEEEeCChhhHHHHHHhhhhcCCCcEEEEEeCCChhhHHHHHHHHHhcCCCCCccCCHHHHhhC-CCCCEEEEe
Q 017143 3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDS-GLCDVVVVS 81 (376)
Q Consensus 3 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D~V~i~ 81 (376)
.+...||||||.|..|+..+.+.+++ +++++.+ |.++.. .+..++.++-+ .-|+|.+.+++- .++|+|.+.
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~l---G~~Vi~l-d~~~~a--pa~~~AD~~~v--~~~~D~~~l~~~a~~~dvIt~e 90 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQM---GIKVKVL-DPLEDC--PASSVAARHVV--GSFDDRAAVREFAKRCDVLTVE 90 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEE-eCCCCC--chhhhCceeee--CCCCCHHHHHHHHHHCCEEEEe
Confidence 34567999999999999988888887 8997764 666542 34444433222 245776555321 137877665
Q ss_pred CCCCccHHHHHHHHcCCCCCeE
Q 017143 82 TPNMTHYQILMDIINHPKPHHV 103 (376)
Q Consensus 82 t~~~~h~~~~~~al~~~~g~~V 103 (376)
..+- ..+.+..+-+ .|..|
T Consensus 91 ~e~v-~~~~l~~le~--~gi~v 109 (577)
T PLN02948 91 IEHV-DVDTLEALEK--QGVDV 109 (577)
T ss_pred cCCC-CHHHHHHHHh--cCCcc
Confidence 4432 2334433334 45543
Done!