Query 017144
Match_columns 376
No_of_seqs 329 out of 3207
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 5.7E-44 1.2E-48 334.2 34.1 281 96-376 6-286 (286)
2 KOG2943 Predicted glyoxalase [ 100.0 1.3E-36 2.8E-41 260.5 19.0 258 104-376 7-278 (299)
3 TIGR02295 HpaD 3,4-dihydroxyph 100.0 2.7E-30 5.9E-35 242.9 29.3 234 112-370 2-258 (294)
4 TIGR03211 catechol_2_3 catecho 100.0 2.1E-30 4.6E-35 244.7 28.2 234 112-367 2-264 (303)
5 TIGR03213 23dbph12diox 2,3-dih 100.0 1.1E-29 2.4E-34 237.9 27.8 233 113-368 2-263 (286)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 4.7E-20 1E-24 177.5 26.7 221 114-342 2-267 (353)
7 COG2514 Predicted ring-cleavag 99.8 4.9E-19 1.1E-23 157.1 20.8 194 110-323 6-242 (265)
8 TIGR00068 glyox_I lactoylgluta 99.8 4.1E-19 9E-24 150.2 18.6 138 108-245 11-148 (150)
9 PLN02367 lactoylglutathione ly 99.8 7.9E-19 1.7E-23 155.6 15.0 125 244-370 75-224 (233)
10 PLN02367 lactoylglutathione ly 99.8 2.3E-18 4.9E-23 152.7 17.9 128 112-241 73-225 (233)
11 PRK10291 glyoxalase I; Provisi 99.8 3.2E-18 7E-23 140.9 16.5 124 119-242 1-124 (129)
12 PRK10291 glyoxalase I; Provisi 99.8 4.4E-18 9.6E-23 140.0 15.0 122 249-370 1-122 (129)
13 PLN02875 4-hydroxyphenylpyruva 99.8 5E-17 1.1E-21 155.7 23.6 249 115-369 1-341 (398)
14 PLN03042 Lactoylglutathione ly 99.8 2.3E-17 5E-22 143.4 18.0 130 109-240 22-176 (185)
15 cd07243 2_3_CTD_C C-terminal d 99.8 2.5E-17 5.5E-22 138.1 16.5 118 112-238 4-125 (143)
16 cd08358 Glo_EDI_BRP_like_21 Th 99.8 3.8E-17 8.2E-22 133.3 16.2 114 114-237 2-126 (127)
17 TIGR00068 glyox_I lactoylgluta 99.8 2.1E-17 4.6E-22 139.8 15.3 131 240-370 13-143 (150)
18 cd07233 Glyoxalase_I Glyoxalas 99.8 5.6E-17 1.2E-21 131.3 16.6 120 115-236 1-121 (121)
19 PLN03042 Lactoylglutathione ly 99.7 4.1E-17 8.8E-22 141.8 14.7 126 243-370 26-176 (185)
20 COG2514 Predicted ring-cleavag 99.7 7.3E-18 1.6E-22 149.7 10.1 158 51-236 67-264 (265)
21 cd08353 Glo_EDI_BRP_like_7 Thi 99.7 1.1E-16 2.4E-21 133.8 16.1 122 113-238 2-141 (142)
22 cd08360 MhqB_like_C C-terminal 99.7 1.1E-16 2.3E-21 132.8 15.7 118 113-240 2-122 (134)
23 PRK11478 putative lyase; Provi 99.7 1.3E-16 2.8E-21 130.9 15.7 122 111-237 3-128 (129)
24 cd07257 THT_oxygenase_C The C- 99.7 3.6E-17 7.8E-22 138.8 12.6 119 114-239 1-126 (153)
25 cd07265 2_3_CTD_N N-terminal d 99.7 1E-16 2.3E-21 130.4 14.8 115 112-238 2-119 (122)
26 PLN02300 lactoylglutathione ly 99.7 2.1E-16 4.6E-21 147.9 18.5 182 55-240 93-280 (286)
27 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 1.8E-16 3.9E-21 128.9 15.3 119 114-236 1-125 (125)
28 cd08342 HPPD_N_like N-terminal 99.7 3E-16 6.4E-21 130.5 16.9 123 115-244 1-129 (136)
29 cd08358 Glo_EDI_BRP_like_21 Th 99.7 1.2E-16 2.7E-21 130.3 14.1 114 244-367 2-126 (127)
30 PRK04101 fosfomycin resistance 99.7 2.1E-16 4.5E-21 131.9 15.7 118 111-239 1-120 (139)
31 TIGR02295 HpaD 3,4-dihydroxyph 99.7 1.8E-16 3.9E-21 149.0 16.1 174 55-238 60-256 (294)
32 cd07233 Glyoxalase_I Glyoxalas 99.7 2.3E-16 4.9E-21 127.7 14.5 120 245-366 1-121 (121)
33 TIGR03645 glyox_marine lactoyl 99.7 3.2E-16 7E-21 134.2 16.0 125 113-240 3-153 (162)
34 TIGR03211 catechol_2_3 catecho 99.7 2.4E-16 5.2E-21 148.8 16.0 173 54-236 59-263 (303)
35 cd07258 PpCmtC_C C-terminal do 99.7 2.9E-16 6.3E-21 131.3 14.4 112 116-239 1-115 (141)
36 cd07237 BphC1-RGP6_C_like C-te 99.7 4.3E-16 9.3E-21 132.4 15.6 123 109-239 4-132 (154)
37 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 7.8E-16 1.7E-20 124.9 15.5 121 113-237 2-125 (125)
38 cd07256 HPCD_C_class_II C-term 99.7 9E-16 1.9E-20 131.4 16.1 118 113-239 2-124 (161)
39 cd08342 HPPD_N_like N-terminal 99.7 4.7E-16 1E-20 129.2 14.0 120 245-371 1-126 (136)
40 cd08353 Glo_EDI_BRP_like_7 Thi 99.7 4.9E-16 1.1E-20 129.9 13.9 121 244-368 3-141 (142)
41 cd09013 BphC-JF8_N_like N-term 99.7 8.1E-16 1.7E-20 125.0 14.5 113 111-238 3-118 (121)
42 cd07257 THT_oxygenase_C The C- 99.7 2.9E-16 6.3E-21 133.2 11.7 120 244-370 1-127 (153)
43 cd07266 HPCD_N_class_II N-term 99.7 7.3E-16 1.6E-20 125.1 13.6 114 112-238 2-118 (121)
44 cd09014 BphC-JF8_C_like C-term 99.7 2.2E-15 4.7E-20 129.7 16.9 123 111-239 3-128 (166)
45 cd08361 PpCmtC_N N-terminal do 99.7 1E-15 2.2E-20 125.2 14.0 113 111-239 3-120 (124)
46 TIGR03081 metmalonyl_epim meth 99.7 9E-16 1.9E-20 125.5 13.3 119 114-237 1-128 (128)
47 cd08363 FosB FosB, a fosfomyci 99.7 1.6E-15 3.5E-20 125.2 14.7 113 115-238 1-115 (131)
48 cd07252 BphC1-RGP6_N_like N-te 99.7 1.4E-15 3E-20 123.5 14.0 111 114-238 2-117 (120)
49 PF00903 Glyoxalase: Glyoxalas 99.7 6.6E-16 1.4E-20 125.7 12.0 120 114-235 1-128 (128)
50 cd07239 BphC5-RK37_C_like C-te 99.7 2.1E-15 4.5E-20 126.6 15.0 113 114-240 4-119 (144)
51 TIGR03213 23dbph12diox 2,3-dih 99.7 1.2E-15 2.5E-20 143.0 15.0 174 54-237 57-262 (286)
52 cd08347 PcpA_C_like C-terminal 99.7 2.4E-15 5.2E-20 128.1 15.4 118 114-240 1-122 (157)
53 KOG0638 4-hydroxyphenylpyruvat 99.7 4.6E-16 1E-20 139.6 11.2 254 112-369 15-338 (381)
54 cd08364 FosX FosX, a fosfomyci 99.7 3.1E-15 6.8E-20 123.5 15.3 119 111-238 1-122 (131)
55 PRK11478 putative lyase; Provi 99.7 2.4E-15 5.2E-20 123.4 14.2 121 243-368 5-129 (129)
56 cd08360 MhqB_like_C C-terminal 99.7 2.3E-15 5.1E-20 124.7 14.3 121 242-372 1-124 (134)
57 cd07243 2_3_CTD_C C-terminal d 99.7 3.3E-15 7.1E-20 125.3 15.2 118 242-368 4-125 (143)
58 cd08343 ED_TypeI_classII_C C-t 99.7 4.6E-15 1E-19 122.4 15.8 117 116-241 1-120 (131)
59 cd07255 Glo_EDI_BRP_like_12 Th 99.7 8E-15 1.7E-19 119.5 16.4 118 113-241 1-122 (125)
60 cd07247 SgaA_N_like N-terminal 99.7 5.3E-15 1.2E-19 118.6 15.0 114 115-237 1-114 (114)
61 cd07241 Glo_EDI_BRP_like_3 Thi 99.6 2.7E-15 5.8E-20 122.0 13.3 118 244-365 1-124 (125)
62 TIGR03645 glyox_marine lactoyl 99.6 3.1E-15 6.8E-20 128.1 13.9 124 243-369 3-152 (162)
63 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 5.2E-15 1.1E-19 120.0 14.5 117 113-237 2-124 (125)
64 cd08346 PcpA_N_like N-terminal 99.6 6.2E-15 1.3E-19 119.9 14.7 120 114-236 1-126 (126)
65 cd08352 Glo_EDI_BRP_like_1 Thi 99.6 5.5E-15 1.2E-19 119.9 14.1 119 244-367 3-125 (125)
66 cd08351 ChaP_like ChaP, an enz 99.6 8.4E-15 1.8E-19 119.4 14.9 112 112-238 2-121 (123)
67 cd07240 ED_TypeI_classII_N N-t 99.6 8.5E-15 1.8E-19 117.7 14.6 111 113-238 1-114 (117)
68 cd07263 Glo_EDI_BRP_like_16 Th 99.6 8.7E-15 1.9E-19 117.5 14.6 117 117-237 1-119 (119)
69 cd07267 THT_Oxygenase_N N-term 99.6 8.4E-15 1.8E-19 117.6 14.4 109 113-238 2-110 (113)
70 cd08362 BphC5-RrK37_N_like N-t 99.6 8.8E-15 1.9E-19 118.3 14.5 113 113-239 2-118 (120)
71 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 1.4E-14 3.1E-19 118.5 15.7 117 114-238 1-128 (128)
72 cd07258 PpCmtC_C C-terminal do 99.6 7.8E-15 1.7E-19 122.6 14.0 117 246-374 1-120 (141)
73 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 4.7E-15 1E-19 117.8 11.9 113 115-235 1-114 (114)
74 cd07249 MMCE Methylmalonyl-CoA 99.6 9.6E-15 2.1E-19 119.2 13.8 119 115-237 1-128 (128)
75 TIGR03081 metmalonyl_epim meth 99.6 7.9E-15 1.7E-19 119.8 13.0 119 244-367 1-128 (128)
76 cd07237 BphC1-RGP6_C_like C-te 99.6 1.1E-14 2.3E-19 123.8 14.0 122 241-370 6-133 (154)
77 PRK06724 hypothetical protein; 99.6 1.8E-14 3.9E-19 118.4 14.9 113 111-239 4-124 (128)
78 cd09011 Glo_EDI_BRP_like_23 Th 99.6 1.3E-14 2.8E-19 117.7 13.6 113 114-238 2-119 (120)
79 cd08348 BphC2-C3-RGP6_C_like T 99.6 5.4E-14 1.2E-18 116.2 16.7 120 114-241 1-123 (134)
80 cd07265 2_3_CTD_N N-terminal d 99.6 1.5E-14 3.2E-19 117.6 12.9 115 243-369 3-120 (122)
81 cd07247 SgaA_N_like N-terminal 99.6 2E-14 4.4E-19 115.2 13.5 114 245-367 1-114 (114)
82 cd07256 HPCD_C_class_II C-term 99.6 2.3E-14 5E-19 122.6 14.4 120 242-370 1-125 (161)
83 cd07244 FosA FosA, a Fosfomyci 99.6 2.4E-14 5.1E-19 116.4 12.6 109 114-239 1-111 (121)
84 cd07264 Glo_EDI_BRP_like_15 Th 99.6 5.5E-14 1.2E-18 114.4 14.6 115 115-238 1-125 (125)
85 cd07263 Glo_EDI_BRP_like_16 Th 99.6 4E-14 8.8E-19 113.6 13.3 117 247-367 1-119 (119)
86 cd08359 Glo_EDI_BRP_like_22 Th 99.6 6E-14 1.3E-18 113.3 14.0 111 117-237 4-119 (119)
87 cd08354 Glo_EDI_BRP_like_13 Th 99.6 6.5E-14 1.4E-18 113.4 14.2 114 115-238 1-122 (122)
88 cd08345 Fosfomycin_RP Fosfomyc 99.6 4.1E-14 8.8E-19 113.1 12.8 109 117-238 1-111 (113)
89 cd08344 MhqB_like_N N-terminal 99.6 7.5E-14 1.6E-18 111.8 14.1 107 114-239 2-110 (112)
90 cd08343 ED_TypeI_classII_C C-t 99.6 8.7E-14 1.9E-18 114.7 14.8 115 246-369 1-118 (131)
91 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 7.1E-14 1.5E-18 113.3 13.6 116 244-367 3-124 (125)
92 cd08355 Glo_EDI_BRP_like_14 Th 99.6 1.3E-13 2.9E-18 111.9 15.1 115 248-367 3-121 (122)
93 PF12681 Glyoxalase_2: Glyoxal 99.6 9.1E-14 2E-18 110.1 13.6 108 120-236 1-108 (108)
94 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 1.4E-13 3E-18 110.0 14.7 109 117-238 3-111 (112)
95 PF00903 Glyoxalase: Glyoxalas 99.6 7.7E-15 1.7E-19 119.3 7.4 120 244-365 1-128 (128)
96 cd08355 Glo_EDI_BRP_like_14 Th 99.6 4.2E-13 9.1E-18 109.0 17.3 115 118-237 3-121 (122)
97 PRK06724 hypothetical protein; 99.6 7.4E-14 1.6E-18 114.7 12.7 112 243-370 6-125 (128)
98 cd07262 Glo_EDI_BRP_like_19 Th 99.5 1.4E-13 3.1E-18 111.8 14.3 114 115-236 1-122 (123)
99 cd07249 MMCE Methylmalonyl-CoA 99.5 8.9E-14 1.9E-18 113.4 13.0 119 245-367 1-128 (128)
100 cd07245 Glo_EDI_BRP_like_9 Thi 99.5 7.4E-14 1.6E-18 110.8 12.1 113 245-365 1-114 (114)
101 PRK04101 fosfomycin resistance 99.5 9E-14 2E-18 115.9 13.0 115 244-369 4-120 (139)
102 cd07246 Glo_EDI_BRP_like_8 Thi 99.5 5.1E-13 1.1E-17 108.0 17.0 115 118-237 5-121 (122)
103 cd08357 Glo_EDI_BRP_like_18 Th 99.5 1.2E-13 2.6E-18 112.3 12.9 113 117-237 2-124 (125)
104 cd08346 PcpA_N_like N-terminal 99.5 1.3E-13 2.9E-18 112.0 13.0 120 244-366 1-126 (126)
105 cd07254 Glo_EDI_BRP_like_20 Th 99.5 3E-13 6.6E-18 109.5 14.9 112 116-239 3-118 (120)
106 cd09014 BphC-JF8_C_like C-term 99.5 1.5E-13 3.3E-18 118.1 13.9 121 243-369 5-128 (166)
107 cd08347 PcpA_C_like C-terminal 99.5 1.9E-13 4.1E-18 116.4 14.0 117 244-369 1-121 (157)
108 cd07239 BphC5-RK37_C_like C-te 99.5 2E-13 4.3E-18 114.6 13.8 114 243-370 3-119 (144)
109 cd09011 Glo_EDI_BRP_like_23 Th 99.5 1.2E-13 2.5E-18 112.0 11.8 113 244-368 2-119 (120)
110 cd07242 Glo_EDI_BRP_like_6 Thi 99.5 3.6E-13 7.9E-18 110.2 14.5 117 244-368 1-128 (128)
111 cd07264 Glo_EDI_BRP_like_15 Th 99.5 3E-13 6.4E-18 110.1 13.7 115 245-368 1-125 (125)
112 cd08349 BLMA_like Bleomycin bi 99.5 5E-13 1.1E-17 106.4 14.4 109 119-237 3-112 (112)
113 cd09013 BphC-JF8_N_like N-term 99.5 2.6E-13 5.7E-18 110.1 12.3 112 243-369 5-119 (121)
114 cd06587 Glo_EDI_BRP_like This 99.5 5.1E-13 1.1E-17 105.0 13.7 112 117-235 1-112 (112)
115 cd07246 Glo_EDI_BRP_like_8 Thi 99.5 7.8E-13 1.7E-17 106.9 15.0 114 249-367 6-121 (122)
116 cd08363 FosB FosB, a fosfomyci 99.5 2.9E-13 6.4E-18 111.7 12.4 114 245-369 1-116 (131)
117 cd07266 HPCD_N_class_II N-term 99.5 2.7E-13 5.9E-18 109.9 11.8 114 243-369 3-119 (121)
118 COG3185 4-hydroxyphenylpyruvat 99.5 1.1E-12 2.3E-17 120.5 16.9 223 112-343 20-275 (363)
119 COG3324 Predicted enzyme relat 99.5 5.6E-13 1.2E-17 107.1 13.1 120 242-369 7-126 (127)
120 cd08361 PpCmtC_N N-terminal do 99.5 2.4E-13 5.2E-18 111.1 11.3 111 243-369 5-120 (124)
121 cd07261 Glo_EDI_BRP_like_11 Th 99.5 5.6E-13 1.2E-17 106.8 13.3 108 118-236 2-113 (114)
122 cd08351 ChaP_like ChaP, an enz 99.5 5.2E-13 1.1E-17 108.8 13.0 111 244-369 4-122 (123)
123 cd07252 BphC1-RGP6_N_like N-te 99.5 5.3E-13 1.2E-17 108.3 12.8 112 244-369 2-118 (120)
124 cd08364 FosX FosX, a fosfomyci 99.5 8.2E-13 1.8E-17 109.0 13.4 116 244-369 4-123 (131)
125 cd09012 Glo_EDI_BRP_like_24 Th 99.5 7E-13 1.5E-17 108.1 12.7 113 115-237 1-123 (124)
126 KOG2944 Glyoxalase [Carbohydra 99.5 1.2E-13 2.6E-18 112.4 7.9 123 245-369 23-169 (170)
127 COG3324 Predicted enzyme relat 99.5 1.8E-12 3.9E-17 104.2 14.5 122 110-239 5-126 (127)
128 cd08349 BLMA_like Bleomycin bi 99.5 1.1E-12 2.5E-17 104.3 13.5 109 249-367 3-112 (112)
129 cd08359 Glo_EDI_BRP_like_22 Th 99.5 1.5E-12 3.2E-17 105.1 14.1 112 247-367 4-119 (119)
130 cd08348 BphC2-C3-RGP6_C_like T 99.5 1.4E-12 3E-17 107.7 14.1 120 244-371 1-123 (134)
131 cd08350 BLMT_like BLMT, a bleo 99.5 1.9E-12 4.1E-17 104.9 13.9 108 117-238 5-119 (120)
132 cd07235 MRD Mitomycin C resist 99.5 8E-13 1.7E-17 107.2 11.6 113 115-236 1-121 (122)
133 KOG2943 Predicted glyoxalase [ 99.5 2.3E-13 5E-18 117.8 8.7 119 242-369 15-144 (299)
134 cd07255 Glo_EDI_BRP_like_12 Th 99.5 1.3E-12 2.8E-17 106.3 12.8 115 244-369 2-120 (125)
135 cd07238 Glo_EDI_BRP_like_5 Thi 99.5 2.2E-12 4.8E-17 103.0 13.9 108 248-368 4-111 (112)
136 PF12681 Glyoxalase_2: Glyoxal 99.4 7.1E-13 1.5E-17 104.9 10.1 108 250-366 1-108 (108)
137 cd08362 BphC5-RrK37_N_like N-t 99.4 1.7E-12 3.7E-17 104.8 12.0 112 244-369 3-118 (120)
138 cd08345 Fosfomycin_RP Fosfomyc 99.4 2E-12 4.3E-17 103.3 12.1 108 247-367 1-110 (113)
139 cd07240 ED_TypeI_classII_N N-t 99.4 2.4E-12 5.2E-17 103.3 12.7 111 244-369 2-115 (117)
140 cd08350 BLMT_like BLMT, a bleo 99.4 3E-12 6.4E-17 103.8 13.1 107 248-368 6-119 (120)
141 cd06587 Glo_EDI_BRP_like This 99.4 4E-12 8.7E-17 99.8 13.4 112 247-365 1-112 (112)
142 cd08354 Glo_EDI_BRP_like_13 Th 99.4 2.5E-12 5.5E-17 104.0 12.4 114 245-368 1-122 (122)
143 KOG2944 Glyoxalase [Carbohydra 99.4 5.3E-13 1.2E-17 108.7 8.0 118 114-238 42-168 (170)
144 cd09012 Glo_EDI_BRP_like_24 Th 99.4 2.2E-12 4.9E-17 105.1 11.9 112 246-367 2-123 (124)
145 PF13669 Glyoxalase_4: Glyoxal 99.4 2.5E-12 5.5E-17 102.5 11.7 95 116-212 1-97 (109)
146 cd07262 Glo_EDI_BRP_like_19 Th 99.4 4.8E-12 1E-16 102.8 13.5 114 245-366 1-122 (123)
147 cd08356 Glo_EDI_BRP_like_17 Th 99.4 3.7E-12 8E-17 102.3 12.5 104 118-237 5-113 (113)
148 cd07267 THT_Oxygenase_N N-term 99.4 4E-12 8.7E-17 101.9 12.7 108 244-368 3-110 (113)
149 cd07261 Glo_EDI_BRP_like_11 Th 99.4 4E-12 8.6E-17 101.8 12.6 108 248-366 2-113 (114)
150 cd07244 FosA FosA, a Fosfomyci 99.4 3.6E-12 7.8E-17 103.5 12.4 109 244-369 1-111 (121)
151 cd07254 Glo_EDI_BRP_like_20 Th 99.4 6.1E-12 1.3E-16 101.8 13.5 112 246-369 3-118 (120)
152 cd07235 MRD Mitomycin C resist 99.4 3.1E-12 6.7E-17 103.7 11.2 113 245-366 1-121 (122)
153 cd07251 Glo_EDI_BRP_like_10 Th 99.4 1.3E-11 2.7E-16 99.7 13.2 110 118-237 2-120 (121)
154 cd08357 Glo_EDI_BRP_like_18 Th 99.4 6.5E-12 1.4E-16 102.0 11.2 113 247-367 2-124 (125)
155 cd08344 MhqB_like_N N-terminal 99.3 1.8E-11 3.9E-16 97.9 12.4 107 244-369 2-110 (112)
156 cd07251 Glo_EDI_BRP_like_10 Th 99.3 4.4E-11 9.6E-16 96.4 12.9 111 248-368 2-121 (121)
157 PF13669 Glyoxalase_4: Glyoxal 99.3 7.5E-12 1.6E-16 99.8 8.2 95 246-342 1-97 (109)
158 cd08356 Glo_EDI_BRP_like_17 Th 99.3 5.4E-11 1.2E-15 95.5 12.8 104 248-367 5-113 (113)
159 cd07250 HPPD_C_like C-terminal 99.2 3.3E-10 7.1E-15 99.6 11.5 99 113-213 2-113 (191)
160 COG3565 Predicted dioxygenase 99.1 1.8E-09 3.8E-14 83.3 10.9 116 114-237 4-128 (138)
161 cd07250 HPPD_C_like C-terminal 99.1 9.3E-10 2E-14 96.7 9.8 98 244-343 3-113 (191)
162 TIGR01263 4HPPD 4-hydroxypheny 98.9 8.5E-09 1.8E-13 99.5 10.9 101 110-212 154-267 (353)
163 COG0346 GloA Lactoylglutathion 98.9 5.1E-09 1.1E-13 84.7 8.0 121 114-237 2-138 (138)
164 PF14506 CppA_N: CppA N-termin 98.9 1.1E-07 2.4E-12 74.4 13.9 113 116-238 2-114 (125)
165 cd06588 PhnB_like Escherichia 98.9 1.3E-07 2.7E-12 77.6 15.2 112 118-236 3-128 (128)
166 cd06588 PhnB_like Escherichia 98.8 9.6E-08 2.1E-12 78.3 13.3 110 250-366 5-128 (128)
167 COG2764 PhnB Uncharacterized p 98.8 2.8E-07 6E-12 75.5 15.6 117 119-240 5-133 (136)
168 PF13468 Glyoxalase_3: Glyoxal 98.8 4.6E-08 1E-12 84.8 11.6 147 115-266 1-175 (175)
169 COG3607 Predicted lactoylgluta 98.8 4E-08 8.6E-13 77.3 9.9 117 114-240 3-129 (133)
170 COG2764 PhnB Uncharacterized p 98.8 2.9E-07 6.3E-12 75.4 13.9 115 250-369 6-132 (136)
171 COG3565 Predicted dioxygenase 98.7 1.3E-07 2.9E-12 73.0 9.4 117 245-369 5-130 (138)
172 COG0346 GloA Lactoylglutathion 98.7 6.7E-08 1.5E-12 78.0 7.1 121 244-367 2-138 (138)
173 COG3607 Predicted lactoylgluta 98.6 3.7E-07 8E-12 71.9 10.2 113 245-367 4-126 (133)
174 PLN02875 4-hydroxyphenylpyruva 98.6 1.7E-07 3.8E-12 90.3 10.2 99 112-212 178-295 (398)
175 PRK01037 trmD tRNA (guanine-N( 98.5 1E-06 2.2E-11 82.3 10.4 106 113-238 246-354 (357)
176 KOG0638 4-hydroxyphenylpyruvat 98.3 1.1E-06 2.4E-11 79.8 5.2 130 243-374 16-154 (381)
177 PRK01037 trmD tRNA (guanine-N( 98.2 1.2E-05 2.6E-10 75.2 9.7 105 243-367 246-353 (357)
178 PRK10148 hypothetical protein; 98.1 0.00033 7.1E-09 58.8 15.9 116 118-241 5-144 (147)
179 COG3185 4-hydroxyphenylpyruvat 98.0 1.9E-05 4.1E-10 73.4 7.1 100 113-213 166-275 (363)
180 PF14696 Glyoxalase_5: Hydroxy 97.9 8.7E-05 1.9E-09 61.2 10.0 121 111-242 6-130 (139)
181 PRK10148 hypothetical protein; 97.8 0.0006 1.3E-08 57.2 12.9 111 250-368 7-141 (147)
182 PF14506 CppA_N: CppA N-termin 97.7 0.00044 9.5E-09 54.5 9.7 112 247-370 3-116 (125)
183 PF13468 Glyoxalase_3: Glyoxal 97.4 0.00034 7.3E-09 60.5 6.0 87 245-337 1-101 (175)
184 PF14696 Glyoxalase_5: Hydroxy 97.4 0.0013 2.8E-08 54.3 8.9 116 244-370 9-128 (139)
185 PF06983 3-dmu-9_3-mt: 3-demet 96.2 0.26 5.7E-06 39.4 13.5 96 123-236 11-116 (116)
186 PF14507 CppA_C: CppA C-termin 95.5 0.02 4.3E-07 44.2 4.1 92 245-365 6-100 (101)
187 PF15067 FAM124: FAM124 family 94.9 0.21 4.6E-06 44.3 9.1 105 114-235 128-235 (236)
188 PF14507 CppA_C: CppA C-termin 94.4 0.067 1.5E-06 41.3 4.2 90 114-235 5-100 (101)
189 PF06983 3-dmu-9_3-mt: 3-demet 94.3 1.2 2.6E-05 35.5 11.6 96 253-366 11-116 (116)
190 PF15067 FAM124: FAM124 family 93.1 0.92 2E-05 40.4 9.5 104 243-365 127-235 (236)
191 PRK11700 hypothetical protein; 77.8 31 0.00066 29.9 9.8 119 114-253 39-165 (187)
192 COG4747 ACT domain-containing 73.3 45 0.00098 26.6 10.3 116 187-340 6-135 (142)
193 COG3865 Uncharacterized protei 72.8 53 0.0012 27.2 12.0 98 123-236 14-122 (151)
194 cd07268 Glo_EDI_BRP_like_4 Thi 72.7 55 0.0012 27.3 9.7 74 115-193 2-82 (149)
195 PF06185 YecM: YecM protein; 67.3 63 0.0014 28.0 9.4 75 114-193 34-115 (185)
196 PF13670 PepSY_2: Peptidase pr 61.7 30 0.00066 25.4 5.8 44 193-238 30-73 (83)
197 cd04883 ACT_AcuB C-terminal AC 53.2 31 0.00067 24.1 4.5 29 313-341 41-71 (72)
198 cd04882 ACT_Bt0572_2 C-termina 51.0 32 0.00069 23.3 4.2 27 312-338 38-64 (65)
199 PF13670 PepSY_2: Peptidase pr 50.9 41 0.00089 24.7 5.0 45 323-369 30-74 (83)
200 COG3865 Uncharacterized protei 50.6 1.5E+02 0.0032 24.7 11.0 35 323-368 90-124 (151)
201 COG3102 Uncharacterized protei 41.6 2.2E+02 0.0048 24.3 8.9 84 113-201 38-129 (185)
202 PF02208 Sorb: Sorbin homologo 38.8 22 0.00047 23.0 1.5 25 243-267 10-34 (47)
203 cd04883 ACT_AcuB C-terminal AC 35.8 80 0.0017 21.9 4.4 26 186-211 44-71 (72)
204 cd04895 ACT_ACR_1 ACT domain-c 32.1 1.6E+02 0.0035 21.2 5.3 40 194-233 15-55 (72)
205 TIGR00318 cyaB adenylyl cyclas 26.9 3.9E+02 0.0085 22.6 9.0 80 187-273 6-104 (174)
206 PF07063 DUF1338: Domain of un 26.4 1.5E+02 0.0033 27.9 5.6 30 180-209 181-216 (302)
207 PF08445 FR47: FR47-like prote 25.9 1.5E+02 0.0032 21.9 4.5 23 120-143 60-82 (86)
208 cd04906 ACT_ThrD-I_1 First of 23.8 1.5E+02 0.0032 21.8 4.1 29 312-340 39-71 (85)
209 PF13176 TPR_7: Tetratricopept 23.7 42 0.00091 20.1 0.9 24 246-269 6-29 (36)
210 PF06185 YecM: YecM protein; 23.1 3.6E+02 0.0079 23.4 6.8 77 244-322 34-114 (185)
211 PF09066 B2-adapt-app_C: Beta2 21.8 2.3E+02 0.0051 21.9 5.2 69 191-263 35-107 (114)
212 KOG4657 Uncharacterized conser 21.5 3E+02 0.0065 24.7 6.0 36 123-161 145-180 (246)
213 KOG4657 Uncharacterized conser 20.7 1.9E+02 0.0041 25.9 4.6 37 252-291 144-180 (246)
214 cd04897 ACT_ACR_3 ACT domain-c 20.3 3.3E+02 0.0071 19.8 5.2 48 317-364 4-56 (75)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=5.7e-44 Score=334.16 Aligned_cols=281 Identities=87% Similarity=1.448 Sum_probs=236.0
Q ss_pred ccccCcccccccccccceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCC
Q 017144 96 SNTVTEQNVLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV 175 (376)
Q Consensus 96 ~~~~~p~~~~~~~~~~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~ 175 (376)
+..+..+.+.+|.++.+.+|.||.|.|+|++++++||+++|||++..+...++..+..+|+.+++...++.+++....+.
T Consensus 6 ~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~ 85 (286)
T PLN02300 6 STAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV 85 (286)
T ss_pred ccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC
Confidence 33445667899998999999999999999999999999999999987665555556677887766555677888765444
Q ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCCCCCccccccccCCh
Q 017144 176 DKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDL 255 (376)
Q Consensus 176 ~~~~~~~g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~~v~L~v~D~ 255 (376)
..+..+.|+.|++|.|+|+++++++++++|+++...|...++++.+.+||+||||+.|||++..+.+.++.|+.|.|+|+
T Consensus 86 ~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~ 165 (286)
T PLN02300 86 DKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGDL 165 (286)
T ss_pred CccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCCH
Confidence 44445678999999999999999999999999988887776656678899999999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHHHHHHHHHHcC
Q 017144 256 DRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSG 335 (376)
Q Consensus 256 ~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~~~~l~~~G 335 (376)
+++.+||+++|||++......++.++.+.++..++......+++..+.+...+..+++.+|++|.|+|+++++++++++|
T Consensus 166 ~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G 245 (286)
T PLN02300 166 DRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVG 245 (286)
T ss_pred HHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcC
Confidence 99999999999999986555555567777776544334556777665554445668899999999999999999999999
Q ss_pred CeeecCCccCCCCCceEEEEECCCCCeEEEEeccccccccC
Q 017144 336 GKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKELE 376 (376)
Q Consensus 336 ~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 376 (376)
++++.+|...|+.+.+.++|+||||+.++|+++++|+||||
T Consensus 246 ~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 246 GKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred CeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhcC
Confidence 99999988888655588999999999999999999999997
No 2
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=260.52 Aligned_cols=258 Identities=52% Similarity=0.878 Sum_probs=226.2
Q ss_pred ccccccccceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCC-----------CceEEEEEeeCCCCceEEEEEEec
Q 017144 104 VLDWVKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYN 172 (376)
Q Consensus 104 ~~~~~~~~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~~ 172 (376)
++.|.+.+..++-|+++.|.|.+++++||+++|||++....++++ ++|...++++|++..|++++|..+
T Consensus 7 ~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYN 86 (299)
T KOG2943|consen 7 LLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYN 86 (299)
T ss_pred hhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEec
Confidence 678889999999999999999999999999999999999888887 678899999999999999999999
Q ss_pred CCCCCCCCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCCCCCcccccccc
Q 017144 173 YGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRV 252 (376)
Q Consensus 173 ~~~~~~~~~~g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~~v~L~v 252 (376)
.+...|..|.++.||.+.++|+-...+.+...|.+ +++...+++.||||+.|+|++..+.+.++.+|+|+|
T Consensus 87 YgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~V 157 (299)
T KOG2943|consen 87 YGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNV 157 (299)
T ss_pred cCccceeccCCcccEEEeHHHHHHHHHHhcCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEe
Confidence 99999999999999999999988777777665542 234557789999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHHHHHHHHH
Q 017144 253 GDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAIK 332 (376)
Q Consensus 253 ~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~~~~l~ 332 (376)
+|+++++.||+++|||++.+. +.++..++++++++ ++.+||+++++......|.+...+++..+|+..+.+.++
T Consensus 158 gdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~iK 231 (299)
T KOG2943|consen 158 GDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAIK 231 (299)
T ss_pred hhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHHH
Confidence 999999999999999999865 33467788898876 599999999998888888888888888899999999999
Q ss_pred HcCCeeecCCccC--CCC-CceEEEEECCCCCeEEEEeccccccccC
Q 017144 333 LSGGKITREPGPL--PGI-NTKITACLDPDGWKSVFVDNLDFLKELE 376 (376)
Q Consensus 333 ~~G~~~~~~p~~~--~~~-~~~~~~~~DPdG~~iel~~~~~~~~~~~ 376 (376)
..+.++..+..+. |++ ...++.+.||||+.|+||.+++|+++++
T Consensus 232 ~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 232 SANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred HhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 9987766554432 443 3478899999999999999999999864
No 3
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=2.7e-30 Score=242.89 Aligned_cols=234 Identities=26% Similarity=0.311 Sum_probs=171.5
Q ss_pred ceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEe
Q 017144 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (376)
Q Consensus 112 ~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V 191 (376)
+.+|+||.|.|+|++++++||+++|||++..+.+ ..+|+.......++.+.+... ...++.|++|.|
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~v 68 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFRV 68 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------CCcCccEEEEEe
Confidence 5689999999999999999999999999876542 234554322222334444332 235788999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCC---------------CCCCccccccccC
Q 017144 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------TPEPLCQVMLRVG 253 (376)
Q Consensus 192 ~---d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~---------------~~~~~~~v~L~v~ 253 (376)
+ |+++++++|+++|+++...+.. +..+.+||+|||||.|||+.... .+.+++|+.|.|.
T Consensus 69 ~~~~dl~~~~~~l~~~Gv~v~~~~~~---~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v~ 145 (294)
T TIGR02295 69 SKEEDLDKAADFFQKLGHPVRLVRDG---GQPEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFVP 145 (294)
T ss_pred CCHHHHHHHHHHHHhcCCcEEeecCC---CCceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEeC
Confidence 7 6888999999999998765432 24589999999999999986331 1235899999999
Q ss_pred ChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCC---HHHHHHH
Q 017144 254 DLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD---VYKTAEA 330 (376)
Q Consensus 254 D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~D---l~~~~~~ 330 (376)
|++++.+||+++|||++......+.+.....++..+. .++.+.+.. ..+++++|++|.|+| +++++++
T Consensus 146 dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v~~~~~~ 216 (294)
T TIGR02295 146 DVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG--GVHDIALTN-------GNGPRLHHIAYWVHDPLNIIKACDI 216 (294)
T ss_pred CHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC--CcCceEeec-------CCCCceeeEEEEcCCHHHHHHHHHH
Confidence 9999999999999999876544333333344444221 122333321 134689999999998 5567899
Q ss_pred HHHcCCe--eecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 331 IKLSGGK--ITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 331 l~~~G~~--~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
|+++|++ +..+|+++..+..+++|++||+|+.|||+....
T Consensus 217 l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 258 (294)
T TIGR02295 217 LASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGDY 258 (294)
T ss_pred HHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEeccc
Confidence 9999998 667777666544578999999999999987654
No 4
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.98 E-value=2.1e-30 Score=244.68 Aligned_cols=234 Identities=23% Similarity=0.256 Sum_probs=169.5
Q ss_pred ceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEe
Q 017144 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (376)
Q Consensus 112 ~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V 191 (376)
.++|+|+.|.|+|++++++||+++|||++..+.+ ..+++.......++.+.+.+. ...|+.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG------QRVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC------ceEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 4589999999999999999999999999876543 134454422212344444332 235789999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCC---------------------CCCccc
Q 017144 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------------------PEPLCQ 247 (376)
Q Consensus 192 ~---d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~---------------------~~~~~~ 247 (376)
+ |+++++++|+++|+++...|.....+.++.+||+||||+.|||++.... ..+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 8 6889999999999998765542222345789999999999999974421 134889
Q ss_pred cccccCChhHHHHHHHHhhCCEEeceecCCCCCe-EEEEeecCCCCCceEEEEcccCCCccccCCCc-eeEEEEEeCC--
Q 017144 248 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKY-TIAVMGYGPEDKNAVLELTYNHGVTEYDKGNG-YAQIAIGTDD-- 323 (376)
Q Consensus 248 v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g-~~hiaf~V~D-- 323 (376)
+.|.|+|++++.+||+++|||++......+++.. ...++..+. ....+.+.. ..+.+ ++|++|.|+|
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~g~~~Hiaf~v~~~~ 219 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSN--KAHDIAFVG-------DPEPGKLHHVSFFLDSWE 219 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCC--CCcccceec-------CCCCCceEEEEEEcCCHH
Confidence 9999999999999999999999876543333332 233444322 122222211 11234 8999999986
Q ss_pred -HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 324 -VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 324 -l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
+++++++|+++|+++.++|.+++....+++||+||+||.|||..
T Consensus 220 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 220 DVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred HHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 55688899999999988887776444579999999999999973
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.97 E-value=1.1e-29 Score=237.86 Aligned_cols=233 Identities=18% Similarity=0.225 Sum_probs=171.2
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeC
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~ 192 (376)
.+|+||+|.|+|++++++||+++|||++..+.+ ....|+.++.. ++.+.+.... ..++.|++|.|+
T Consensus 2 ~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~-----~~~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~V~ 67 (286)
T TIGR03213 2 RGLGYLGIGVSDVDAWREFATEVLGMMVASEGE-----NDALYLRLDSR--AHRIAVHPGE-------SDDLAYAGWEVA 67 (286)
T ss_pred ceeeEEEEEeCCHHHHHHHHHhccCcccccCCC-----CceEEEEcCCC--ceEEEEEECC-------cCCeeeEeeeeC
Confidence 489999999999999999999999998764321 12446666543 3444454421 246789999999
Q ss_pred C---HHHHHHHHHHcCCeeecCCeec--CCCCeEEEEEEcCCCCEEEEeecCCC------------------CCCccccc
Q 017144 193 D---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERGPT------------------PEPLCQVM 249 (376)
Q Consensus 193 d---~d~~~~rl~~~G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~~~~------------------~~~~~~v~ 249 (376)
| ++++.++|+++|+++...|... ..+....++|.|||||.+|++..... +.+++|+.
T Consensus 68 ~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv~ 147 (286)
T TIGR03213 68 DEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHIV 147 (286)
T ss_pred CHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEEE
Confidence 8 8889999999999987655321 12356789999999999999963211 12689999
Q ss_pred cccCChhHHHHHHHHhhCCEEeceecC--CCC-CeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHHH
Q 017144 250 LRVGDLDRAINFYKKAFGMELLRKRDN--PDY-KYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYK 326 (376)
Q Consensus 250 L~v~D~~~a~~FY~~~lG~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~ 326 (376)
|.|+|++++.+||+++|||++...... +++ .+...++..++. ++.+.+.. .....+++|++|+|+|+++
T Consensus 148 l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~------~~~~~~~~Hiaf~v~d~~~ 219 (286)
T TIGR03213 148 LRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAA------GPSEKRLNHLMLEVDTLDD 219 (286)
T ss_pred EEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEec------CCCCCceEEEEEEcCCHHH
Confidence 999999999999999999998765422 211 123455654322 33333322 1134679999999987666
Q ss_pred ---HHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 327 ---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 327 ---~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
+.++|+++|+ ....|++++.+..+++|++||+|++|||...
T Consensus 220 v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 220 VGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred HHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 8999999999 6667777766567899999999999999763
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.87 E-value=4.7e-20 Score=177.45 Aligned_cols=221 Identities=22% Similarity=0.368 Sum_probs=150.0
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC----C--CCCCCceEE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK----Y--DIGTGFGHF 187 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~----~--~~~~g~~hi 187 (376)
+++||.+.|+|++++.+||++.|||++.......... ..+.++.| ...+++........ + .+++|+.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~i 76 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKDV 76 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEEE
Confidence 6899999999999999999999999998763222221 22233433 34566655332211 1 257899999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCC---------------------C----C
Q 017144 188 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------------T----P 242 (376)
Q Consensus 188 ~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~---------------------~----~ 242 (376)
+|.|+|++++++++.++|+++..+|.....+.....-+..++|..+.|+++.. . -
T Consensus 77 af~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (353)
T TIGR01263 77 AFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVGL 156 (353)
T ss_pred EEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCCe
Confidence 99999999999999999999987765531011222223344444444443210 0 1
Q ss_pred CCccccccccC--ChhHHHHHHHHhhCCEEeceecCCC--CCe-EEEEeecCCCCCceEEEEcccCC---Cc------cc
Q 017144 243 EPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPD--YKY-TIAVMGYGPEDKNAVLELTYNHG---VT------EY 308 (376)
Q Consensus 243 ~~~~~v~L~v~--D~~~a~~FY~~~lG~~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~l~l~~~~~---~~------~~ 308 (376)
..++|+++.|. |++++++||+++|||++....+... ... ..++.. ..+...++|..+.. .. ..
T Consensus 157 ~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~---~~g~~~i~L~ep~~~~~~s~i~~fl~~ 233 (353)
T TIGR01263 157 IAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS---PDGKVKIPLNEPASGKDKSQIEEFLEF 233 (353)
T ss_pred EEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC---CCCcEEEEEeccCCCCCCCHHHHHHHH
Confidence 24899999999 9999999999999999876543221 112 222222 12346677766321 11 12
Q ss_pred cCCCceeEEEEEeCCHHHHHHHHHHcCCeeecCC
Q 017144 309 DKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREP 342 (376)
Q Consensus 309 ~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~~~~~p 342 (376)
..|+|++||||.|+|+++++++|+++|++++..|
T Consensus 234 ~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 234 YNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred cCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 3589999999999999999999999999999876
No 7
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.84 E-value=4.9e-19 Score=157.14 Aligned_cols=194 Identities=23% Similarity=0.359 Sum_probs=140.1
Q ss_pred ccceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC-CCCCCCceEEE
Q 017144 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFG 188 (376)
Q Consensus 110 ~~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~ 188 (376)
+..+.+.-|+|.|+|++++..||+++||+++..+.. ..+-++.+.. ..+.|.+.+.... .....|+-|++
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~---~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGT---PLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCE---EEEEEEeCCCCCCCCccccceeeee
Confidence 455689999999999999999999999999988765 4556666643 4556666444332 23567999999
Q ss_pred EEeCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCC------------------------
Q 017144 189 IAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT------------------------ 241 (376)
Q Consensus 189 f~V~d---~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~------------------------ 241 (376)
|.+++ +.++..++...|+++. ++.++. ....+||.||+||.||++..++.
T Consensus 77 fLlP~r~~L~~~l~hl~~~~~~l~-Ga~DH~--vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~ 153 (265)
T COG2514 77 FLLPTREDLARVLNHLAEEGIPLV-GASDHL--VSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLE 153 (265)
T ss_pred eecCCHHHHHHHHHHHHhcCCccc-ccCcch--hheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhh
Confidence 99997 5666778888899886 344543 57899999999999999966542
Q ss_pred ------------CCCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcc-cCCCccc
Q 017144 242 ------------PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTY-NHGVTEY 308 (376)
Q Consensus 242 ------------~~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~-~~~~~~~ 308 (376)
...|+||.|.|.|++++.+||+++|||++... .+ ...|+.+|+ .++.+.... +......
T Consensus 154 ~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~--~~----~A~F~a~G~--YHHHia~N~W~s~~~~~ 225 (265)
T COG2514 154 EATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTAR--GP----SALFLASGD--YHHHLAANTWNSRGARP 225 (265)
T ss_pred hccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeec--CC----cceEEecCC--cceeEEEeccccCCCCC
Confidence 11379999999999999999999999999866 22 235667654 355554432 2111111
Q ss_pred --cCCCceeEEEEEeCC
Q 017144 309 --DKGNGYAQIAIGTDD 323 (376)
Q Consensus 309 --~~g~g~~hiaf~V~D 323 (376)
..-.|+..+.+.+++
T Consensus 226 ~~~~~~GLa~~~i~~~~ 242 (265)
T COG2514 226 RNANASGLAWLEIHTPD 242 (265)
T ss_pred CCCCCCCcceEEEEcCC
Confidence 223477777777766
No 8
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.83 E-value=4.1e-19 Score=150.24 Aligned_cols=138 Identities=63% Similarity=1.079 Sum_probs=107.5
Q ss_pred ccccceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEE
Q 017144 108 VKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 187 (376)
Q Consensus 108 ~~~~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi 187 (376)
.++..++|+||.|.|+|++++.+||+++|||++..+...++..+..++++.+....+..+++.......+...+.++.|+
T Consensus 11 ~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi 90 (150)
T TIGR00068 11 PKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHI 90 (150)
T ss_pred cccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEE
Confidence 46677899999999999999999999999999877655444444566777654444455666543332233345688999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCCCCCc
Q 017144 188 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPL 245 (376)
Q Consensus 188 ~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~ 245 (376)
+|.|+|+++++++|.++|+++..+|...+++..+.+||+||||+.|||++......++
T Consensus 91 ~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~ 148 (150)
T TIGR00068 91 AIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDGL 148 (150)
T ss_pred EEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhhc
Confidence 9999999999999999999988877666666677889999999999999887655443
No 9
>PLN02367 lactoylglutathione lyase
Probab=99.80 E-value=7.9e-19 Score=155.64 Aligned_cols=125 Identities=33% Similarity=0.575 Sum_probs=104.8
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCC---------------CceEEEEcccCCCcc-
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPED---------------KNAVLELTYNHGVTE- 307 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~l~l~~~~~~~~- 307 (376)
.+.|++|+|.|++++++||+++|||++..+.+.++.++.++|+++++.. ....|||.++++...
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~ 154 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESD 154 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCcc
Confidence 4899999999999999999999999999888888888999999754321 246899998877542
Q ss_pred -----ccCC----CceeEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 308 -----YDKG----NGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 308 -----~~~g----~g~~hiaf~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
+..| .|++|++|.|+|+++++++|+++|+++..+|...+. .+++|++||||++|||++...
T Consensus 155 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 155 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred ccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 4433 489999999999999999999999999987754332 478999999999999999764
No 10
>PLN02367 lactoylglutathione lyase
Probab=99.80 E-value=2.3e-18 Score=152.73 Aligned_cols=128 Identities=37% Similarity=0.685 Sum_probs=104.8
Q ss_pred ceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCC---------------ceEEEEEEecCCCC
Q 017144 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPED---------------SHFVVELTYNYGVD 176 (376)
Q Consensus 112 ~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~l~l~~~~~~~ 176 (376)
...+.|+.|+|.|++++++||+++|||++..+.+.++..+..+|+++++.. ....|||.++.+..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 447999999999999999999999999999998888888889999764311 13478998765543
Q ss_pred C------CCCC----CCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCC
Q 017144 177 K------YDIG----TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (376)
Q Consensus 177 ~------~~~~----~g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 241 (376)
. +..+ .|++||+|.|+|+++++++|+++|+++...|.... ..+.+|++||||+.|||++...-
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~--~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGK--MKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCC--ceEEEEEECCCCCEEEEEecccc
Confidence 1 3332 58999999999999999999999999987776432 35678999999999999987654
No 11
>PRK10291 glyoxalase I; Provisional
Probab=99.80 E-value=3.2e-18 Score=140.87 Aligned_cols=124 Identities=56% Similarity=1.059 Sum_probs=97.1
Q ss_pred EEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHHHHH
Q 017144 119 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTV 198 (376)
Q Consensus 119 ~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d~~~ 198 (376)
.|.|+|++++++||+++|||++..+...++..+..+|+.+++......+++....+..++..+.++.|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 37899999999999999999988766555555677788776544344566665444344445668999999999999999
Q ss_pred HHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCCC
Q 017144 199 DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 242 (376)
Q Consensus 199 ~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 242 (376)
++|+++|+++..+|.+.+++..+.+||+||||+.|||++....+
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 99999999988776666555567788999999999999977543
No 12
>PRK10291 glyoxalase I; Provisional
Probab=99.78 E-value=4.4e-18 Score=140.04 Aligned_cols=122 Identities=49% Similarity=0.935 Sum_probs=97.1
Q ss_pred ccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHHHHH
Q 017144 249 MLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTA 328 (376)
Q Consensus 249 ~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~~ 328 (376)
+|.|.|++++++||+++|||++......++..+.+.++..++......+++....+...+..+.+++|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999987665556666777787765444455667765444444456678999999999999999
Q ss_pred HHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 329 EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 329 ~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
++|+++|+++..++.+.+.+..+++|++||||+.|||++..+
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 999999999988776665554467889999999999999763
No 13
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.78 E-value=5e-17 Score=155.68 Aligned_cols=249 Identities=21% Similarity=0.271 Sum_probs=169.5
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCC--ceEEEEEeeCCCCceEEEEEEecCCC-----------------
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED--RYTNAFLGYGPEDSHFVVELTYNYGV----------------- 175 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~l~l~~~~~~----------------- 175 (376)
++||.+.|.|..++..||+..|||+.+.......+ ......++-|+ +.+.+......
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~----i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGD----LVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCC----EEEEEeCCCCCccccccccccccccccc
Confidence 58999999999999999999999998876543222 12233444332 22323222101
Q ss_pred --CC------CCCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCC----CCeEEEEEEcCCCCEEEEeecCC---
Q 017144 176 --DK------YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG----GNTVIAFIEDPDGYKFELLERGP--- 240 (376)
Q Consensus 176 --~~------~~~~~g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~----~~~~~~~~~DPdG~~iel~~~~~--- 240 (376)
.. ..+|+|+.-++|+|+|++++++++.++|++...+|..... +.-...-+..++|..+.|+++..
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 00 0267899999999999999999999999998777665432 12345556777888888776421
Q ss_pred ------------C--------CCCccccccccCChhHHHHHHHHhhCCEEeceecCCCC-----CeEEEEeecCCCCCce
Q 017144 241 ------------T--------PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDY-----KYTIAVMGYGPEDKNA 295 (376)
Q Consensus 241 ------------~--------~~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ 295 (376)
. -..|+|++++|.+++.++.||+++|||+.....+.++. +.....+..+ ++..
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp--~g~v 234 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN--NEMV 234 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcC--CCcE
Confidence 0 12589999999999999999999999998865443321 1334444432 2356
Q ss_pred EEEEcccCC----Cc------cccCCCceeEEEEEeCCHHHHHHHHHHc----CCeeecCC-c--------cCCC---C-
Q 017144 296 VLELTYNHG----VT------EYDKGNGYAQIAIGTDDVYKTAEAIKLS----GGKITREP-G--------PLPG---I- 348 (376)
Q Consensus 296 ~l~l~~~~~----~~------~~~~g~g~~hiaf~V~Dl~~~~~~l~~~----G~~~~~~p-~--------~~~~---~- 348 (376)
.++|..+.. .+ ...+|+|++||||.|+|+.+++++|+++ |++++..| . +.+. .
T Consensus 235 ~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e 314 (398)
T PLN02875 235 LLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEE 314 (398)
T ss_pred EEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChh
Confidence 777776532 11 1256899999999999999999999999 99999855 1 1121 0
Q ss_pred ------CceEEEEECCCCCeEEEEecc
Q 017144 349 ------NTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 349 ------~~~~~~~~DPdG~~iel~~~~ 369 (376)
...+.+=+|.+|.++++...+
T Consensus 315 ~~~~L~~~~ILvD~d~~G~LLQIFTkp 341 (398)
T PLN02875 315 QIKECEELGILVDKDDQGVLLQIFTKP 341 (398)
T ss_pred hHHHHHHcCEEEecCCCceEEEEeccc
Confidence 113556667777777776655
No 14
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.77 E-value=2.3e-17 Score=143.39 Aligned_cols=130 Identities=34% Similarity=0.641 Sum_probs=101.1
Q ss_pred cccceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCC---------------ceEEEEEEecC
Q 017144 109 KSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPED---------------SHFVVELTYNY 173 (376)
Q Consensus 109 ~~~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~l~l~~~~ 173 (376)
.+...++.|+.|+|.|++++++||+++|||++..+...++..+..+|++++... ....|+|....
T Consensus 22 ~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~ 101 (185)
T PLN03042 22 ATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNW 101 (185)
T ss_pred CCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcC
Confidence 344558999999999999999999999999998887777777788888754311 12478888654
Q ss_pred CCCC------CC----CCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCC
Q 017144 174 GVDK------YD----IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (376)
Q Consensus 174 ~~~~------~~----~~~g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 240 (376)
+... +. .+.|+.|++|.|+|+++++++|+++|+++...|... ...+.+|++||||+.|||++...
T Consensus 102 ~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~--~~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 102 GTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDG--KMKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred CCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccC--CceeEEEEECCCCCEEEEEECCC
Confidence 3221 22 235899999999999999999999999998766432 23567888999999999998653
No 15
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.76 E-value=2.5e-17 Score=138.14 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=89.7
Q ss_pred ceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCc-eEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEE
Q 017144 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDR-YTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (376)
Q Consensus 112 ~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~ 190 (376)
.++|+||+|.|+|++++.+||+++|||++..+...+++. ...+|+..+.. ++.+.+... .+.+++|++|.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~~-------~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVGG-------PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEecC-------CCCCceEEEEE
Confidence 458999999999999999999999999987765433222 23557765543 334444332 13578999999
Q ss_pred eCCHHH---HHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 191 VEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 191 V~d~d~---~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
|+|+++ +.++|+++|+++...|.++..+.++++||.|||||.|||...
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 999887 567999999998877776554457789999999999999753
No 16
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=3.8e-17 Score=133.29 Aligned_cols=114 Identities=45% Similarity=0.869 Sum_probs=89.2
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCC-----------CceEEEEEeeCCCCceEEEEEEecCCCCCCCCCC
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGT 182 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~ 182 (376)
++.|++|+|.|+++|++||+++|||++..+...++ +.+..+++++++...+..++|.++.+..+++.+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68999999999999999999999999987775554 3344466766544456789999877666666555
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 183 GFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 183 g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
+ |++|.|++. ++.++|+++|+++...|. + +++++||||+.|||+.
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~------~-~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED------G-VYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC------C-EEEEECCCCCEEEEec
Confidence 5 667777776 556999999999876543 1 7889999999999974
No 17
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.76 E-value=2.1e-17 Score=139.76 Aligned_cols=131 Identities=48% Similarity=0.875 Sum_probs=101.7
Q ss_pred CCCCCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEE
Q 017144 240 PTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAI 319 (376)
Q Consensus 240 ~~~~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf 319 (376)
....++.|+.|.|.|++++.+||+++|||++......+...+.+.+++.+.......+++....+......+.+..|++|
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f 92 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAI 92 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEE
Confidence 34567999999999999999999999999987655555555566666654333345566654433333445568899999
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 320 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 320 ~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
.|+|+++++++++++|+++..+|...+.+..+.+|++||+|+.|||++..+
T Consensus 93 ~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 93 GVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred ecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 999999999999999999998886666554578899999999999999774
No 18
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.75 E-value=5.6e-17 Score=131.31 Aligned_cols=120 Identities=53% Similarity=0.927 Sum_probs=92.3
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCC-CCCCCCCCceEEEEEeCC
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDIGTGFGHFGIAVED 193 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~~~~~~g~~hi~f~V~d 193 (376)
|.||+|.|+|++++.+||+++|||++......++..+..+++.......+..+++...... .++..+.++.|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999887655444445567777654112345555543222 233344578899999999
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 194 ~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
+++++++++++|+++..+|... ++++.+||+||+|+.+|++
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 9999999999999998887655 3567899999999999985
No 19
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.74 E-value=4.1e-17 Score=141.84 Aligned_cols=126 Identities=30% Similarity=0.555 Sum_probs=99.5
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCC---------------CceEEEEcccCCCcc
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPED---------------KNAVLELTYNHGVTE 307 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~l~l~~~~~~~~ 307 (376)
..+.|++|.|.|++++++||+++|||++..+...++.++.+++++.+... ....++|.++.+...
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 35899999999999999999999999998877666777888888753211 245788887554321
Q ss_pred ------ccC----CCceeEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 308 ------YDK----GNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 308 ------~~~----g~g~~hiaf~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
+.. +.|+.|++|.|+|+++++++|+++|+++...|.... ..+++|++||||++|||++...
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCC
Confidence 221 248999999999999999999999999987664322 2467899999999999998763
No 20
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.74 E-value=7.3e-18 Score=149.68 Aligned_cols=158 Identities=18% Similarity=0.267 Sum_probs=125.3
Q ss_pred cccchhhhhccccCCccccccchHHHHHHcCcccccccCCCccCCccccCccc----------cccccccc---------
Q 017144 51 SRRLALFQLGAAIPQSHFFGAKALKLLRAEGSTIEASTSGNMAPTSNTVTEQN----------VLDWVKSD--------- 111 (376)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~~~--------- 111 (376)
-+.-.|||+|+++|+++++|+...++... |....+++||.++++.|+.||+| +..|.+..
T Consensus 67 ~~~aGLyH~AfLlP~r~~L~~~l~hl~~~-~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ 145 (265)
T COG2514 67 PRAAGLYHTAFLLPTREDLARVLNHLAEE-GIPLVGASDHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEP 145 (265)
T ss_pred ccccceeeeeeecCCHHHHHHHHHHHHhc-CCcccccCcchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccc
Confidence 35678999999999999999999888775 67788999999999999999999 33343222
Q ss_pred --------------------ceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEe
Q 017144 112 --------------------KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTY 171 (376)
Q Consensus 112 --------------------~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~ 171 (376)
.+.|+||+|.|.|++++.+||+++|||+++.+.+ ...|+..|.+++|+.++.+.
T Consensus 146 ld~~~ll~~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~ 219 (265)
T COG2514 146 LDVEALLEEATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP------SALFLASGDYHHHLAANTWN 219 (265)
T ss_pred cCHHHHhhhccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC------cceEEecCCcceeEEEeccc
Confidence 2479999999999999999999999999988733 57899999999898888888
Q ss_pred cCCCCCCC-CCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 172 NYGVDKYD-IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 172 ~~~~~~~~-~~~g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
..+..+.+ ...|+.++.+.+++-..+.... . ...||.|+.+.++
T Consensus 220 s~~~~~~~~~~~GLa~~~i~~~~~~~l~~~~------------------~---~~~Dp~G~~i~~~ 264 (265)
T COG2514 220 SRGARPRNANASGLAWLEIHTPDPEKLDATG------------------T---RLTDPWGIVIRVV 264 (265)
T ss_pred cCCCCCCCCCCCCcceEEEEcCCcccccccc------------------c---ceecCCCceEEEe
Confidence 76654432 4578999999888744321100 0 0289999998875
No 21
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.74 E-value=1.1e-16 Score=133.76 Aligned_cols=122 Identities=26% Similarity=0.329 Sum_probs=89.9
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCC-----------CceEEEEEeeCCCCceEEEEEEecCCCC-----
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYNYGVD----- 176 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~~~~~~----- 176 (376)
.+++||+|.|+|++++++||++ |||++..+...++ .....+++..... ...+++.......
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~iel~~~~~~~~~~~~ 78 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDG--HSRLELSKFHHPAVIADH 78 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCC--CceEEEEEecCCCCcCcC
Confidence 4899999999999999999998 9998865543221 1123344443222 4567776632111
Q ss_pred --CCCCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 177 --KYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 177 --~~~~~~g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
....+.|+.|+||.|+|+++++++|+++|+++..+|.... ++.+.+|++||||+.|||+|.
T Consensus 79 ~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~-~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 79 RPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYE-NSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecC-CCeEEEEEECCCCCEEEeeec
Confidence 1123468899999999999999999999999987665544 367889999999999999974
No 22
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.74 E-value=1.1e-16 Score=132.80 Aligned_cols=118 Identities=25% Similarity=0.315 Sum_probs=91.4
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeC
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~ 192 (376)
.+|+||+|.|+|++++++||+++|||++..+.. ....|+..+....++.+.+..... ...|+.|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~-----~~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK-----GRGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec-----CcEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 479999999999999999999999999876542 135677665322355666654321 1368999999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCC
Q 017144 193 DVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (376)
Q Consensus 193 d~d~~~---~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 240 (376)
|++++. ++|+++|+++...|...+.++.+++||+||+|+.|||.....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 988766 599999999887777666566778999999999999996543
No 23
>PRK11478 putative lyase; Provisional
Probab=99.73 E-value=1.3e-16 Score=130.90 Aligned_cols=122 Identities=21% Similarity=0.296 Sum_probs=85.6
Q ss_pred cceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCC-CceEEEEEeeCCCCceEEEEEEecCCC---CCCCCCCCceE
Q 017144 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE-DRYTNAFLGYGPEDSHFVVELTYNYGV---DKYDIGTGFGH 186 (376)
Q Consensus 111 ~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~l~l~~~~~~---~~~~~~~g~~h 186 (376)
...+++||+|.|+|++++++||+++|||++..+...++ ..+. ..+..+. +..+++...... .......|+.|
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~h 78 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALNG---QYVIELFSFPFPPERPSRPEACGLRH 78 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecCC---CcEEEEEEecCCCCCCCCCCCCceeE
Confidence 34689999999999999999999999999864322111 1111 1222222 345666542211 11123457899
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 187 i~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
++|.|+|+++++++|++.|+++...+.. +.++.+.+||+||||+.||+++
T Consensus 79 i~f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 79 LAFSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999999999998644322 2235688999999999999986
No 24
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.73 E-value=3.6e-17 Score=138.83 Aligned_cols=119 Identities=26% Similarity=0.379 Sum_probs=90.4
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecC-CCceEEEEEeeCCCC---ceEEEEEEecCCCCCCCCCCCceEEEE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP-EDRYTNAFLGYGPED---SHFVVELTYNYGVDKYDIGTGFGHFGI 189 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~---~~~~l~l~~~~~~~~~~~~~g~~hi~f 189 (376)
+|+||+|.|+|++++++||+++|||++..+...+ ......+|+.+++.. .++.+.+... .+.+++|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-------~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQG-------PESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhcC-------CCCceeEEEE
Confidence 5899999999999999999999999987665433 223356777764321 1112222211 1468999999
Q ss_pred EeCCHHHHH---HHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecC
Q 017144 190 AVEDVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 190 ~V~d~d~~~---~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
.|+|++++. ++|+++|+++..+|+.+..+...++|++||+||.|||....
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999886 89999999998888777655667889999999999999554
No 25
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.73 E-value=1e-16 Score=130.35 Aligned_cols=115 Identities=29% Similarity=0.323 Sum_probs=85.7
Q ss_pred ceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEe
Q 017144 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (376)
Q Consensus 112 ~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V 191 (376)
.++|+|+.|.|+|++++++||+++|||++..... + ..+++.......++.+.+... ...++.|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~---~~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--Q---GRVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--C---ceEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 4589999999999999999999999999876532 1 234555432222344544321 235788999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 192 ~---d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
+ |+++++++|+++|+++...|.....+.++.+||+|||||.||+...
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 7 6889999999999998765544333456789999999999999864
No 26
>PLN02300 lactoylglutathione lyase
Probab=99.73 E-value=2.1e-16 Score=147.95 Aligned_cols=182 Identities=40% Similarity=0.696 Sum_probs=128.5
Q ss_pred hhhhhccccCCccccccchHHHHHHcCcccccccC---CCccCCccccCccc-ccccc--cccceeeEEEEEEeCChhHH
Q 017144 55 ALFQLGAAIPQSHFFGAKALKLLRAEGSTIEASTS---GNMAPTSNTVTEQN-VLDWV--KSDKRRMLHVVYRVGDLDKT 128 (376)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~p~~-~~~~~--~~~~~~i~Hv~l~v~Dl~~a 128 (376)
.+.|+++.+++- -... +.++..|........ +......++.||+| .++.. .....++.|+.|.|+|++++
T Consensus 93 g~~hia~~v~dv---d~~~-~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~~~a 168 (286)
T PLN02300 93 GFGHFGIAVEDV---AKTV-ELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGDLDRS 168 (286)
T ss_pred CccEEEEEeCCH---HHHH-HHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCCHHHH
Confidence 467999999764 2223 334444432221111 11112356789999 33332 23456899999999999999
Q ss_pred HHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHcCCee
Q 017144 129 IKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKV 208 (376)
Q Consensus 129 ~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d~~~~rl~~~G~~i 208 (376)
.+||+++|||++......++..+..+++.++.......+++....+...+..+++.+|++|.|+|+++++++++++|+++
T Consensus 169 ~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v 248 (286)
T PLN02300 169 IKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKI 248 (286)
T ss_pred HHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeE
Confidence 99999999999986555455556777776543322335666554443344456889999999999999999999999999
Q ss_pred ecCCeecCCCCeEEEEEEcCCCCEEEEeecCC
Q 017144 209 TREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (376)
Q Consensus 209 ~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 240 (376)
..+|...++.+++.++|+||||+.++|++...
T Consensus 249 ~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~ 280 (286)
T PLN02300 249 TREPGPLPGINTKITACLDPDGWKTVFVDNID 280 (286)
T ss_pred ecCCccCCCCceEEEEEECCCCCEEEEEccch
Confidence 99888887655678899999999999997653
No 27
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=1.8e-16 Score=128.89 Aligned_cols=119 Identities=23% Similarity=0.373 Sum_probs=87.7
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC---CCCCCCceEEEEE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YDIGTGFGHFGIA 190 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~---~~~~~g~~hi~f~ 190 (376)
+++||+|.|+|++++++||+++|||++..+...+...+..+|+..++ ...+++.+.....+ .....|+.|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 58999999999999999999999999865543333334556776652 34567665332211 1233588999999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 191 VED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 191 V~d---~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
|+| +++++++|+++|+++..+|...+. +.+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~-g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGD-GYYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCC-CeEEEEEECCCCCEEEeC
Confidence 964 789999999999999876654433 445677999999999983
No 28
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.72 E-value=3e-16 Score=130.46 Aligned_cols=123 Identities=21% Similarity=0.264 Sum_probs=93.0
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC------CCCCCCceEEE
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YDIGTGFGHFG 188 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~------~~~~~g~~hi~ 188 (376)
|+|+.|.|+|++++++||+++|||++..+...+ .....++..+ ...+.+........ ...+.++.|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 589999999999999999999999987664322 1223444322 34555554222111 12456889999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCCCCC
Q 017144 189 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 244 (376)
Q Consensus 189 f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 244 (376)
|.|+|+++++++++++|+++..+|...+ ++.+.++++||||+.|||++.....++
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~-~~~~~~~i~dp~G~~ie~~~~~~~~~~ 129 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEP-GELKIAAIKGYGDSLHTLVDRKGYKGP 129 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecC-CeEEEEEEeccCCcEEEEEecCCCCCc
Confidence 9999999999999999999998888754 477899999999999999997766443
No 29
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=1.2e-16 Score=130.28 Aligned_cols=114 Identities=29% Similarity=0.580 Sum_probs=89.5
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCC-----------CCeEEEEeecCCCCCceEEEEcccCCCccccCCC
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-----------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGN 312 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~ 312 (376)
++.|++|+|.|+++|++||+++|||++.++.+.++ +++..++++..++..+..++|.++++..+++.|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 57899999999999999999999999887665554 4445556665444457789999988776676666
Q ss_pred ceeEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 313 GYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 313 g~~hiaf~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
+ |++|.|++. ++.++|+++|+++...|. .+++++||||++|||++
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 6 566666666 555999999999886543 27899999999999986
No 30
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.72 E-value=2.1e-16 Score=131.93 Aligned_cols=118 Identities=23% Similarity=0.414 Sum_probs=89.5
Q ss_pred cceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEE
Q 017144 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (376)
Q Consensus 111 ~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~ 190 (376)
|+.+|.||.|.|+|++++++||+++|||++..+.+ ..+++..+. ..+.+......+....+.++.|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g----~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG----LWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC----eEEEeeccCCCCCccCCCCeeEEEEE
Confidence 45689999999999999999999999999875432 345565542 34444433222222234568899999
Q ss_pred eC--CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecC
Q 017144 191 VE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 191 V~--d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
++ |+++++++++++|+++...|...++ +++.+||+|||||.|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 98 8999999999999998766665544 568999999999999998654
No 31
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.72 E-value=1.8e-16 Score=149.02 Aligned_cols=174 Identities=21% Similarity=0.314 Sum_probs=121.8
Q ss_pred hhhhhccccCCccccccchHHHHHHcCcccccccCCCccCCccccCccc-cccc-----------------ccccceeeE
Q 017144 55 ALFQLGAAIPQSHFFGAKALKLLRAEGSTIEASTSGNMAPTSNTVTEQN-VLDW-----------------VKSDKRRML 116 (376)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~-~~~~-----------------~~~~~~~i~ 116 (376)
.+.|+++.+++..++.....++.+. |...............++.||+| .++. .....++|+
T Consensus 60 ~~~hiaf~v~~~~dl~~~~~~l~~~-Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~ 138 (294)
T TIGR02295 60 ALSYIGFRVSKEEDLDKAADFFQKL-GHPVRLVRDGGQPEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLD 138 (294)
T ss_pred CccEEEEEeCCHHHHHHHHHHHHhc-CCcEEeecCCCCceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeee
Confidence 5789999999888887766666664 43333222222345677889999 1111 112357899
Q ss_pred EEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCH--
Q 017144 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDV-- 194 (376)
Q Consensus 117 Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~-- 194 (376)
||+|.|+|++++++||+++|||++..+...+.+.....|+..+.. ++.+.+... .+.+++|+||.|+|.
T Consensus 139 Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~Hiaf~v~d~~~ 209 (294)
T TIGR02295 139 HFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG--VHDIALTNG-------NGPRLHHIAYWVHDPLN 209 (294)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC--cCceEeecC-------CCCceeeEEEEcCCHHH
Confidence 999999999999999999999998766543333333556654432 233444321 236899999999994
Q ss_pred -HHHHHHHHHcCCe--eecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 195 -AKTVDLVKAKGGK--VTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 195 -d~~~~rl~~~G~~--i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
+++.++|+++|++ +...|+.+..+...++|++||+|+.||++..
T Consensus 210 v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 210 IIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred HHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 4568899999997 6666766555566789999999999999864
No 32
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.71 E-value=2.3e-16 Score=127.72 Aligned_cols=120 Identities=41% Similarity=0.763 Sum_probs=92.5
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCC-ccccCCCceeEEEEEeCC
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV-TEYDKGNGYAQIAIGTDD 323 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~-~~~~~g~g~~hiaf~V~D 323 (376)
+.|+.|.|+|++++.+||+++||+++......++....++++.......+..+++....+. .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999876554444445666666533113456666554332 223445688999999999
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEE
Q 017144 324 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 366 (376)
Q Consensus 324 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 366 (376)
+++++++++++|+++..+|.... ..+++||+||+|++|||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDGG--MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccCC--CceEEEEECCCCCEEEeC
Confidence 99999999999999998876553 357899999999999985
No 33
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.71 E-value=3.2e-16 Score=134.24 Aligned_cols=125 Identities=29% Similarity=0.340 Sum_probs=88.4
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEe----ec--------------CCCceEEEEEeeCCCCceEEEEEEecCC
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKR----DI--------------PEDRYTNAFLGYGPEDSHFVVELTYNYG 174 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~l~~g~~~~~~~l~l~~~~~ 174 (376)
++++||+|.|+|++++++||+++|||++..+. .. .......+++..++ ...+++++...
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 47999999999999999999999999885321 00 01123455665443 33477777543
Q ss_pred CCCCC-----CCCCceEEEEEeCCHHHHHHHHHHcCCeeecCC-eec-CC-CCeEEEEEEcCCCCEEEEeecCC
Q 017144 175 VDKYD-----IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREP-GPV-KG-GNTVIAFIEDPDGYKFELLERGP 240 (376)
Q Consensus 175 ~~~~~-----~~~g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p-~~~-~~-~~~~~~~~~DPdG~~iel~~~~~ 240 (376)
..... .+.|+.|++|.|+|+++++++|+++|+++...+ ... ++ ...+.+|++|||||.|||++...
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 22111 246899999999999999999999998764332 211 11 13478999999999999998764
No 34
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.71 E-value=2.4e-16 Score=148.82 Aligned_cols=173 Identities=14% Similarity=0.188 Sum_probs=119.4
Q ss_pred chhhhhccccCCccccccchHHHHHHcCcccc-ccc--CCCccCCccccCccc-cccc----------------------
Q 017144 54 LALFQLGAAIPQSHFFGAKALKLLRAEGSTIE-AST--SGNMAPTSNTVTEQN-VLDW---------------------- 107 (376)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~--~~~~~~~~~~~~p~~-~~~~---------------------- 107 (376)
..+.|+++.+++...+.....++.+. |.... ... +.......++.||+| .+|.
T Consensus 59 ~g~~hiaf~v~~~~dl~~~~~~l~~~-G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~ 137 (303)
T TIGR03211 59 AGLDHMAFKVESEADLERLVKRLEAY-GVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDP 137 (303)
T ss_pred CceeEEEEEeCCHHHHHHHHHHHHHc-CCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccc
Confidence 35779999999988887777776654 43322 111 122234567789998 1110
Q ss_pred -ccccceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCce-EEEEEeeCCCCceEEEEEEecCCCCCCCCCCC-c
Q 017144 108 -VKSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRY-TNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG-F 184 (376)
Q Consensus 108 -~~~~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~-~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g-~ 184 (376)
..+..++|+||+|.|+|++++++||+++|||++..+...+++.. ...|+..+.. ++.+.+... .+.| +
T Consensus 138 ~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~g~~ 208 (303)
T TIGR03211 138 LRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK--AHDIAFVGD-------PEPGKL 208 (303)
T ss_pred cCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC--CcccceecC-------CCCCce
Confidence 11235689999999999999999999999999877654433322 3456655432 222333221 1234 8
Q ss_pred eEEEEEeCCH---HHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 185 GHFGIAVEDV---AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 185 ~hi~f~V~d~---d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
+|+||.|+|+ ++++++|+++|+++..+|..+..+.++++||+||+|+.||+.
T Consensus 209 ~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 209 HHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred EEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 9999999974 457779999999998888766544568999999999999998
No 35
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.71 E-value=2.9e-16 Score=131.29 Aligned_cols=112 Identities=21% Similarity=0.285 Sum_probs=89.1
Q ss_pred EEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCH-
Q 017144 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDV- 194 (376)
Q Consensus 116 ~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~- 194 (376)
+||.|.|+|++++++||+++|||++..+.+ ...+|+.......++.+.+.+. ...+++|++|.|+|.
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~-----~~~~~l~~~~~~~~h~~~~~~~-------~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE-----DRIVFMRCHPNPFHHTFAVGPA-------SSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC-----CEEEEEEcCCCCCcceeeeccC-------CCCceEEEEEECCCHH
Confidence 599999999999999999999999877642 1467787654333455544321 236899999999875
Q ss_pred --HHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecC
Q 017144 195 --AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 195 --d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
++++++|+++|+++..+|..++.++.+.+||+||+|+.||+.-..
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~ 115 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGM 115 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCc
Confidence 567999999999998888887767788999999999999998554
No 36
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.70 E-value=4.3e-16 Score=132.37 Aligned_cols=123 Identities=23% Similarity=0.346 Sum_probs=93.8
Q ss_pred cccceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecC---CCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCce
Q 017144 109 KSDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP---EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFG 185 (376)
Q Consensus 109 ~~~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~ 185 (376)
++..++|+||+|.|+|++++++||+++|||++......+ +.....+|+.++.. ++.+.+.... .+.++.
T Consensus 4 ~~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i~~~~~~------~~~g~~ 75 (154)
T cd07237 4 VTGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR--HHSLALAEGP------GPKRIH 75 (154)
T ss_pred ccCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC--CCCEEEEcCC------CCceeE
Confidence 345678999999999999999999999999987653322 11335677776543 3344444321 236799
Q ss_pred EEEEEeCCHH---HHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecC
Q 017144 186 HFGIAVEDVA---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 186 hi~f~V~d~d---~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
|++|.|+|.+ +++++|+++|+++..+|..++.++.+.+|++||+|+.|||....
T Consensus 76 Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 76 HLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 9999998755 68999999999998887776666778999999999999998554
No 37
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=7.8e-16 Score=124.91 Aligned_cols=121 Identities=30% Similarity=0.372 Sum_probs=85.5
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCC--C-CCCCCCCceEEEE
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV--D-KYDIGTGFGHFGI 189 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~--~-~~~~~~g~~hi~f 189 (376)
.+|+||+|.|+|++++++||+++|||++......++.......+.... ...+++...... . ....+.|+.|++|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 479999999999999999999999999876543222111122232221 224455432211 1 1123468899999
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 190 AVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 190 ~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
.|+|++++.++++++|+++...|.... .+.+.+|++||+|+.|||+|
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDEF-TGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccCC-CceEEEEEECCCCCEEEecC
Confidence 999999999999999999876553333 35678999999999999975
No 38
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.69 E-value=9e-16 Score=131.38 Aligned_cols=118 Identities=25% Similarity=0.398 Sum_probs=85.8
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeC
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~ 192 (376)
++|+||+|.|+|++++++||+++|||++......+.+.....|+..+.. ++.+.+... .+.++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~--~~~i~l~~~-------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG--VHDTALTGG-------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC--cceEEEecC-------CCCceeEEEEEcC
Confidence 5899999999999999999999999998755433233333456654433 334444332 2357899999998
Q ss_pred C---HHHHHHHHHHcCCe--eecCCeecCCCCeEEEEEEcCCCCEEEEeecC
Q 017144 193 D---VAKTVDLVKAKGGK--VTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 193 d---~d~~~~rl~~~G~~--i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
| +++++++|+++|+. +..+|..+..++.+++||+|||||.||+++..
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 6 66778899999986 33445544434567899999999999998644
No 39
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.69 E-value=4.7e-16 Score=129.24 Aligned_cols=120 Identities=20% Similarity=0.252 Sum_probs=91.5
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCcc------ccCCCceeEEE
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE------YDKGNGYAQIA 318 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~------~~~g~g~~hia 318 (376)
++|+.|.|+|++++++||+++|||++......++ ....++.. ....+.+........ ...+.+.+|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~----g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQ----GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEc----CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5799999999999999999999999976543321 23344432 134555543222111 12457899999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecccc
Q 017144 319 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 371 (376)
Q Consensus 319 f~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 371 (376)
|.|+|+++++++|+++|++++.+|...+++ .+.++++||||+.|||+++.+.
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~-~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGE-LKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCe-EEEEEEeccCCcEEEEEecCCC
Confidence 999999999999999999999988764543 5899999999999999998764
No 40
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=4.9e-16 Score=129.89 Aligned_cols=121 Identities=20% Similarity=0.285 Sum_probs=89.5
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCC-----------CCCeEEEEeecCCCCCceEEEEcccCCCcc-----
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP-----------DYKYTIAVMGYGPEDKNAVLELTYNHGVTE----- 307 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~----- 307 (376)
++.|++|.|.|++++++||++ |||++......+ ..+..++++.. .+++..++|.....+..
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRT--PDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeC--CCCCceEEEEEecCCCCcCcCC
Confidence 578999999999999999998 999886543221 12344555542 22356677765322111
Q ss_pred --ccCCCceeEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 308 --YDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 308 --~~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
...+.|+.|++|.|+|+++++++|+++|+++..++...+.+ .+++|++||||+.|||+|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~-~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENS-YRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCC-eEEEEEECCCCCEEEeeec
Confidence 12346889999999999999999999999998766544432 5889999999999999985
No 41
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.69 E-value=8.1e-16 Score=124.97 Aligned_cols=113 Identities=21% Similarity=0.324 Sum_probs=85.0
Q ss_pred cceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEE
Q 017144 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (376)
Q Consensus 111 ~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~ 190 (376)
.+.+|+|++|.|+|++++++||+++|||++..+.+ ..+|+...+...++.+.+... ...++.|++|.
T Consensus 3 ~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~ 69 (121)
T cd09013 3 DIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAWR 69 (121)
T ss_pred CccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEEE
Confidence 45689999999999999999999999999876543 245665543323445555432 23578999999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 191 VED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 191 V~d---~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
|+| ++++.++++++|+++...+... +.+..+||+|||||.+|+...
T Consensus 70 v~~~~~v~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 70 ASSPEALERRVAALEASGLGIGWIEGDP--GHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred cCCHHHHHHHHHHHHHcCCccccccCCC--CCcceEEEECCCCCEEEEEEe
Confidence 984 7788999999999875433222 245688999999999999854
No 42
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.68 E-value=2.9e-16 Score=133.25 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=89.6
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCC-CCCeEEEEeecCCCC---CceEEEEcccCCCccccCCCceeEEEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP-DYKYTIAVMGYGPED---KNAVLELTYNHGVTEYDKGNGYAQIAI 319 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~-~~~~~~~~l~~~~~~---~~~~l~l~~~~~~~~~~~g~g~~hiaf 319 (376)
+++|+.|.|+|++++++||+++||+++......+ ..+....++..+... .++.+.+.. ..+++++|++|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 4789999999999999999999999987654333 223345566543210 001111110 12578999999
Q ss_pred EeCCHHHHH---HHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 320 GTDDVYKTA---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 320 ~V~Dl~~~~---~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
.|+|++++. ++|+++|+++.++++++..+...++|++||+||.|||.....
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 999999986 999999999999998887665678899999999999986653
No 43
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.68 E-value=7.3e-16 Score=125.05 Aligned_cols=114 Identities=27% Similarity=0.356 Sum_probs=85.3
Q ss_pred ceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEe
Q 017144 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (376)
Q Consensus 112 ~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V 191 (376)
++++.|+.|.|+|++++++||+++|||++....+ ..+|+.......++.+.+.+. ...++.|++|.|
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~v 68 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFRV 68 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC-------CCCceeEEEEEC
Confidence 4689999999999999999999999999875432 234554322222344444432 125788999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 192 E---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 192 ~---d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
. |+++++++++++|+++...|.....+.++.+|+.||||+.||++..
T Consensus 69 ~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 69 RSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 5 6889999999999998766544444456789999999999999854
No 44
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.68 E-value=2.2e-15 Score=129.66 Aligned_cols=123 Identities=21% Similarity=0.338 Sum_probs=90.9
Q ss_pred cceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEE
Q 017144 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (376)
Q Consensus 111 ~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~ 190 (376)
.+.+|+|++|.|+|++++++||+++|||++........+.....|+..... ++.+.+..... ....++.|++|.
T Consensus 3 ~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~----~~~~~~~hiaf~ 76 (166)
T cd09014 3 GVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK--VHDVAYTRDPA----GARGRLHHLAYA 76 (166)
T ss_pred CcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC--ceeEEEecCCC----CCCCCceEEEEE
Confidence 456899999999999999999999999998766543333334567765433 33444433211 122468999999
Q ss_pred eCCH---HHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecC
Q 017144 191 VEDV---AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 191 V~d~---d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
|+|. ++++++|+++|+++...|.....+...++|+.||+|+.|||+...
T Consensus 77 v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 77 LDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 9964 477889999999987777665544556799999999999999763
No 45
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.68 E-value=1e-15 Score=125.16 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=85.7
Q ss_pred cceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEE
Q 017144 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 190 (376)
Q Consensus 111 ~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~ 190 (376)
+..+|.||+|.|+|++++.+||+++|||++..+.+ ...|++.+.. ++.+.+.... ++..|++|+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~--~~~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDAR--DHTLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCc--cEEEEEEeCC--------CceEEEEEE
Confidence 45689999999999999999999999999865432 2467776543 3445554321 356799999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeecC--CCCeEEEEEEcCCCCEEEEeecC
Q 017144 191 VED---VAKTVDLVKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 191 V~d---~d~~~~rl~~~G~~i~~~p~~~~--~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
|+| +++++++++++|+++..++.... .+..+++||+|||||.||+....
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 986 99999999999999876554221 23467789999999999998543
No 46
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.67 E-value=9e-16 Score=125.49 Aligned_cols=119 Identities=31% Similarity=0.520 Sum_probs=86.4
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCC-C---C--CCCCCceEE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD-K---Y--DIGTGFGHF 187 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~-~---~--~~~~g~~hi 187 (376)
+|+|++|.|+|++++++||+++|||++......++.....+++..++ ..+++....... . + ..+.|+.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 58999999999999999999999999876543333334556666542 245555432111 0 0 124678899
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecC-CeecCCCCeEEEEE--EcCCCCEEEEee
Q 017144 188 GIAVEDVAKTVDLVKAKGGKVTRE-PGPVKGGNTVIAFI--EDPDGYKFELLE 237 (376)
Q Consensus 188 ~f~V~d~d~~~~rl~~~G~~i~~~-p~~~~~~~~~~~~~--~DPdG~~iel~~ 237 (376)
+|.|+|+++++++|+++|+++..+ |...+ ++.+.+|+ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~-~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGA-GGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCC-CCCEEEEecccccCcEEEEecC
Confidence 999999999999999999998764 43333 34566667 799999999975
No 47
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.67 E-value=1.6e-15 Score=125.23 Aligned_cols=113 Identities=23% Similarity=0.377 Sum_probs=83.2
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCC-
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED- 193 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d- 193 (376)
|+||.|.|+|++++++||+++|||++..+.+ ...++..+. ..+.+......+......++.|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGG----TWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCc----eEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999865422 234455542 34444443322222223578899999985
Q ss_pred -HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 194 -VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 194 -~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
+++++++|+++|+++..+|....+ .++.+||.|||||.|||.+.
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~ 115 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTG 115 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccC-cceEEEEECCCCCEEEEecC
Confidence 999999999999998755544333 56889999999999999844
No 48
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.67 E-value=1.4e-15 Score=123.53 Aligned_cols=111 Identities=19% Similarity=0.258 Sum_probs=84.2
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCC
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED 193 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d 193 (376)
+|.||+|.|+|++++++||+++|||++..+.. ...+|+..++. ++.+.+.... ..++.|++|.+++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~-----~~~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE-----DGALYLRMDDR--AWRIAVHPGE-------ADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC-----CCeEEEEccCC--ceEEEEEeCC-------CCceeEEEEEECC
Confidence 68999999999999999999999999865421 12456665433 4555554421 2577899999975
Q ss_pred ---HHHHHHHHHHcCCeeecCCeec--CCCCeEEEEEEcCCCCEEEEeec
Q 017144 194 ---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 194 ---~d~~~~rl~~~G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
+++++++|+++|+++...|.+. ..+.++.+||+|||||.||++..
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 8888999999999997655322 22345789999999999999854
No 49
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.67 E-value=6.6e-16 Score=125.66 Aligned_cols=120 Identities=28% Similarity=0.404 Sum_probs=86.7
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeec--CCCceEEEEEeeCCCCceEEEEEEecCCCCCCCC---CCCceEEE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDI--PEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDI---GTGFGHFG 188 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~--~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~---~~g~~hi~ 188 (376)
+|+||+|.|.|++++++||+++|||++...... ........++..+.. ++.+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG--HIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS--CEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc--ceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999987762 222334555555443 44444444322221111 01345666
Q ss_pred EEeC---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEE
Q 017144 189 IAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (376)
Q Consensus 189 f~V~---d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 235 (376)
+.+. |+++++++|++.|+++..+|.....+....+|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 6665 5778899999999999988888877777778999999999997
No 50
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.67 E-value=2.1e-15 Score=126.64 Aligned_cols=113 Identities=23% Similarity=0.419 Sum_probs=87.5
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCC
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED 193 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d 193 (376)
+|+||.|.|+|++++++||+++|||++..... ....|+..+.. ++.+.+... ...++.|++|.|+|
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v~d 69 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG-----DQMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEMPS 69 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC-----CeEEEEECCCC--cceEEEccC-------CCCceEEEEEECCC
Confidence 79999999999999999999999999865432 13467776654 234444332 12578899999999
Q ss_pred HHHHH---HHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCC
Q 017144 194 VAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (376)
Q Consensus 194 ~d~~~---~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 240 (376)
++++. ++|+++|+++..+|.....+..+++||+||+|+.|||++...
T Consensus 70 ~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 70 IDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred HHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 77765 899999999887765555455678899999999999997653
No 51
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.67 E-value=1.2e-15 Score=143.01 Aligned_cols=174 Identities=21% Similarity=0.293 Sum_probs=121.5
Q ss_pred chhhhhccccCCccccccchHHHHHHcCcccccc-----cCCCccCCccccCccc-ccccc--------c----------
Q 017144 54 LALFQLGAAIPQSHFFGAKALKLLRAEGSTIEAS-----TSGNMAPTSNTVTEQN-VLDWV--------K---------- 109 (376)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~p~~-~~~~~--------~---------- 109 (376)
-.+.|+++.|++...+.....+|.+ .|...... .....+...++.||+| .+|.. .
T Consensus 57 ~~~~~~~f~V~~~~~l~~~~~~L~~-~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~ 135 (286)
T TIGR03213 57 DDLAYAGWEVADEAGLDQVKEKLEK-AGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSG 135 (286)
T ss_pred CCeeeEeeeeCCHHHHHHHHHHHHH-cCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCc
Confidence 3567899999998777666666655 45333221 1223345678889999 22211 0
Q ss_pred --ccceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCC--C-ceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCc
Q 017144 110 --SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPE--D-RYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 184 (376)
Q Consensus 110 --~~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~--~-~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~ 184 (376)
....+|+||+|.|+|++++.+||+++|||++..+...+. + .+..+|+.+++. ++.+.+.... ...++
T Consensus 136 ~~~~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~--~~~~~l~~~~------~~~~~ 207 (286)
T TIGR03213 136 FVTGDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER--HHSLAFAAGP------SEKRL 207 (286)
T ss_pred cccCCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC--cceEEEecCC------CCCce
Confidence 113489999999999999999999999999876543221 1 123567877654 3344443321 24679
Q ss_pred eEEEEEeCCHHH---HHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 185 GHFGIAVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 185 ~hi~f~V~d~d~---~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
+|++|.|+|.++ ++++|+++|+ +...|+.++.+..+++|++||+|+.||+..
T Consensus 208 ~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 208 NHLMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 999999998776 7899999999 555666666667889999999999999985
No 52
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.67 E-value=2.4e-15 Score=128.07 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=87.1
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC-CCCCCCceEEEEEeC
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVE 192 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~f~V~ 192 (376)
+|+||+|.|+|++++++||+++|||++..+.. ....|+..+. ..++.+++........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~-----~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG-----DRVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC-----CEEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 58999999999999999999999999976643 1233443332 2245677766432221 223357889999999
Q ss_pred C---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCC
Q 017144 193 D---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (376)
Q Consensus 193 d---~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 240 (376)
| +++++++|++.|+++.. +... +..+.+||+||||+.||++...+
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~~--~~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVDR--FYFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cccc--ccEEEEEEECCCCcEEEEEECCC
Confidence 8 89999999999998643 3332 34688999999999999998654
No 53
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.66 E-value=4.6e-16 Score=139.60 Aligned_cols=254 Identities=21% Similarity=0.350 Sum_probs=170.4
Q ss_pred ceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCc--eEEEEEeeCCCCceEEEEEEecCCCC-----CCCCCCCc
Q 017144 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDR--YTNAFLGYGPEDSHFVVELTYNYGVD-----KYDIGTGF 184 (376)
Q Consensus 112 ~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~--~~~~~l~~g~~~~~~~l~l~~~~~~~-----~~~~~~g~ 184 (376)
..+++||.+.|.|...+..||+..|||+.....+.+.+. +...-++.| ...+.+.-...++-. -..+|.|+
T Consensus 15 ~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g--~~vFv~~s~~~p~~~~~G~~l~~Hgdgv 92 (381)
T KOG0638|consen 15 FLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG--KIVFVFNSAYNPDNSEYGDHLVKHGDGV 92 (381)
T ss_pred eeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC--CEEEEEecCCCCCchhhhhhhhhcccch
Confidence 358999999999999999999999999988755443321 111222222 112222222221111 12367788
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeeecCCeecCC--CCeEEEEEEcCCCCEEEEeecCCC-----------------C---
Q 017144 185 GHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGPT-----------------P--- 242 (376)
Q Consensus 185 ~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iel~~~~~~-----------------~--- 242 (376)
..+||+|+|++++.+.+.++|+.+..+|..... |..+++.++.+.-....+++.... +
T Consensus 93 kdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l~ 172 (381)
T KOG0638|consen 93 KDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKLP 172 (381)
T ss_pred hceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCCC
Confidence 899999999999999999999999988876654 456777788887666666655431 1
Q ss_pred ----CCccccccccC--ChhHHHHHHHHhhCCEEeceecCCCCCe-----EEEEeecCCCCCceEEEEcccC-CCc----
Q 017144 243 ----EPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPDYKY-----TIAVMGYGPEDKNAVLELTYNH-GVT---- 306 (376)
Q Consensus 243 ----~~~~~v~L~v~--D~~~a~~FY~~~lG~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~l~l~~~~-~~~---- 306 (376)
..++|++.+++ .++.+.+||.+.|||...+..+++.-+. +.+.+.. .+.-..+.+.++. +.+
T Consensus 173 ~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan--~~esi~mpinEp~~G~k~ksQ 250 (381)
T KOG0638|consen 173 KGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLAN--YEESIKMPINEPAPGKKKKSQ 250 (381)
T ss_pred ccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhc--CCccEEEeccCCCCCCccHHH
Confidence 24799999998 6899999999999999887776543211 0111111 1112333333322 111
Q ss_pred -----cccCCCceeEEEEEeCCHHHHHHHHHHcCCeeecCCccC--------C--C---C-------CceEEEEECCCCC
Q 017144 307 -----EYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPL--------P--G---I-------NTKITACLDPDGW 361 (376)
Q Consensus 307 -----~~~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~~~~~p~~~--------~--~---~-------~~~~~~~~DPdG~ 361 (376)
.++.|+|++|+++-++|+-.+++.+++.|++++.+|... . . . ...+..=.|-.|.
T Consensus 251 Iqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gy 330 (381)
T KOG0638|consen 251 IQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGY 330 (381)
T ss_pred HHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcE
Confidence 247899999999999999999999999999999888421 0 0 0 0134455677788
Q ss_pred eEEEEecc
Q 017144 362 KSVFVDNL 369 (376)
Q Consensus 362 ~iel~~~~ 369 (376)
++++...+
T Consensus 331 LLQIFTKp 338 (381)
T KOG0638|consen 331 LLQIFTKP 338 (381)
T ss_pred Eeeeeccc
Confidence 88887654
No 54
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.66 E-value=3.1e-15 Score=123.48 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=84.0
Q ss_pred cceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCc-eEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEE
Q 017144 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDR-YTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 189 (376)
Q Consensus 111 ~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f 189 (376)
|+.+|+||.|.|+|++++++||+++|||++..+.+..... ....++..+ ...+++...... ...+++|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~----~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIG----GLWIAIMEGDSL----QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcC----CeEEEEecCCCC----CCCCceEEEE
Confidence 4568999999999999999999999999876554221100 011222222 134555532211 2246899999
Q ss_pred EeC--CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 190 AVE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 190 ~V~--d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
.|+ |++++.++|+++|+++..+ .+...+.++.+||+|||||.+||...
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecC
Confidence 998 6999999999999987643 33333457899999999999999854
No 55
>PRK11478 putative lyase; Provisional
Probab=99.66 E-value=2.4e-15 Score=123.36 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEeceecCCC-CCeEEEEeecCCCCCceEEEEcccCCCc---cccCCCceeEEE
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-YKYTIAVMGYGPEDKNAVLELTYNHGVT---EYDKGNGYAQIA 318 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~l~~~~~~~---~~~~g~g~~hia 318 (376)
.+++|+.|.|+|++++.+||+++|||++......+. ..+.. .+..+ .+..+++....... ......+..|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~---~~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALN---GQYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecC---CCcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 458999999999999999999999999864322111 11111 12211 13556664322111 112335788999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 319 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 319 f~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
|.|+|+++++++|+++|+++...+.. +..+.+++||+||||+.|||++.
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEeC
Confidence 99999999999999999998744322 32235889999999999999874
No 56
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.66 E-value=2.3e-15 Score=124.70 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=90.4
Q ss_pred CCCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEe
Q 017144 242 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 321 (376)
Q Consensus 242 ~~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V 321 (376)
|.++.|+.|.|.|++++.+||+++||+++..... . ...++..++...+..+.+.... ....+++|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~-----~~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTP-----APMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCC-----CCCCcceEEEEEe
Confidence 4578999999999999999999999999875432 1 1234544322234555554321 1247899999999
Q ss_pred CCHHHHH---HHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccccc
Q 017144 322 DDVYKTA---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFL 372 (376)
Q Consensus 322 ~Dl~~~~---~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 372 (376)
+|+++.. ++|+++|+++.++|.+++.++.+++||+||+|+.|||.......
T Consensus 71 ~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~~ 124 (134)
T cd08360 71 GDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDYV 124 (134)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccccc
Confidence 9887766 59999999998888777765557799999999999998765443
No 57
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.66 E-value=3.3e-15 Score=125.31 Aligned_cols=118 Identities=11% Similarity=0.128 Sum_probs=86.7
Q ss_pred CCCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCe-EEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEE
Q 017144 242 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKY-TIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIG 320 (376)
Q Consensus 242 ~~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~ 320 (376)
..+++|++|.|+|++++.+||+++|||++..+...+++.. ...++..+.. .+.+.+.. ..+.+++|++|.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~-------~~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVG-------GPDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEec-------CCCCCceEEEEE
Confidence 4568999999999999999999999999876653333322 2334443322 23333321 113678999999
Q ss_pred eCCHHH---HHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 321 TDDVYK---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 321 V~Dl~~---~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
|+|+++ +.++|+++|+++.++|.++..+..+.+||+|||||.|||+..
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 998777 678999999999888877664445789999999999999763
No 58
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.66 E-value=4.6e-15 Score=122.36 Aligned_cols=117 Identities=30% Similarity=0.441 Sum_probs=90.3
Q ss_pred EEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHH
Q 017144 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVA 195 (376)
Q Consensus 116 ~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d 195 (376)
+||.|.|+|++++++||+++|||++......+ +....+|+..+.. ++.+.+.... ...++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED--HHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC--cceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987665433 3235667776543 3345554431 1468899999999875
Q ss_pred ---HHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCC
Q 017144 196 ---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (376)
Q Consensus 196 ---~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 241 (376)
+++++++++|+++...|...+.+..++++|+||+|+.|||.+..+.
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 120 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYR 120 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCcc
Confidence 6789999999999877766555567889999999999999976654
No 59
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.65 E-value=8e-15 Score=119.45 Aligned_cols=118 Identities=25% Similarity=0.411 Sum_probs=88.0
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCC-CCCCCCCceEEEEEe
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD-KYDIGTGFGHFGIAV 191 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~-~~~~~~g~~hi~f~V 191 (376)
++|+||+|.|+|++++++||+++|||++....+ ..+++..++. ...+.+....... ......++.|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~~--~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGGK--RPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCCC--eEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 479999999999999999999999999976632 3456665442 3455565543321 222346788999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCC
Q 017144 192 ED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (376)
Q Consensus 192 ~d---~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 241 (376)
+| +++++++++++|+++..+ ... +..+.+||+|||||.+|+....+.
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~--~~~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDH--LVSEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccc--cceeEEEEECCCCCEEEEEEecCc
Confidence 85 889999999999987543 332 245789999999999999976653
No 60
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.65 E-value=5.3e-15 Score=118.57 Aligned_cols=114 Identities=24% Similarity=0.232 Sum_probs=84.9
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCH
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDV 194 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~ 194 (376)
+.|++|.|+|++++++||+++||+++..... +.. ..+++..++. ..+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGGG---AVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCCc---cEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999875542 112 2344554431 223333322211 1234567899999999
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 195 d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
++++++|+++|+++..+|...+ +.++.++++|||||.|+|+|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIP-GVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccC-CcEEEEEEECCCCCEEEeEC
Confidence 9999999999999988887665 46689999999999999975
No 61
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=2.7e-15 Score=121.96 Aligned_cols=118 Identities=24% Similarity=0.328 Sum_probs=84.8
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCcc---ccCCCceeEEEEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE---YDKGNGYAQIAIG 320 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~---~~~g~g~~hiaf~ 320 (376)
++.|+.|.|.|++++++||+++|||++......+...+...++..++ +..+++........ .....++.|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47899999999999999999999999865433333334444555432 35566654322211 1233578999999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEE
Q 017144 321 TD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 365 (376)
Q Consensus 321 V~---Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 365 (376)
|+ |+++++++|+++|+++..+|...+.+ .+.++++|||||.|||
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~ 124 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEI 124 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEe
Confidence 95 58999999999999998766544332 3457899999999998
No 62
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.65 E-value=3.1e-15 Score=128.12 Aligned_cols=124 Identities=23% Similarity=0.235 Sum_probs=88.1
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEece----ecC--------------CCCCeEEEEeecCCCCCceEEEEcccCC
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRK----RDN--------------PDYKYTIAVMGYGPEDKNAVLELTYNHG 304 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~----~~~--------------~~~~~~~~~l~~~~~~~~~~l~l~~~~~ 304 (376)
..++|+.|.|.|++++++||+++|||++..+ ... ....+.+.++..++ +..++|....+
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEeccC
Confidence 4689999999999999999999999987521 010 11225556665432 34577765433
Q ss_pred Ccc-c----cCCCceeEEEEEeCCHHHHHHHHHHcCCeeecCCccC--CCC-CceEEEEECCCCCeEEEEecc
Q 017144 305 VTE-Y----DKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPL--PGI-NTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 305 ~~~-~----~~g~g~~hiaf~V~Dl~~~~~~l~~~G~~~~~~p~~~--~~~-~~~~~~~~DPdG~~iel~~~~ 369 (376)
... . ..+.|..|++|.|+|+++++++++++|+++..++... ++. ..+++|++|||||.|||+++.
T Consensus 80 ~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 80 QENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 211 1 1246899999999999999999999999865433211 221 137899999999999999986
No 63
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=5.2e-15 Score=120.04 Aligned_cols=117 Identities=29% Similarity=0.465 Sum_probs=86.5
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCC---CCCCCCCCceEEEE
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV---DKYDIGTGFGHFGI 189 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~---~~~~~~~g~~hi~f 189 (376)
++|+|+.|.|+|++++++||+++|||++....+.. ...++..++ ..+++...... .......|..|++|
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~~ 73 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLCL 73 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeCC----EEEEEecCCCccCcCccCCCCCCceEEE
Confidence 47999999999999999999999999987654311 123344432 24555442221 11224568899999
Q ss_pred EeCC-HHHHHHHHHHcCCeeecCCeecCC--CCeEEEEEEcCCCCEEEEee
Q 017144 190 AVED-VAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 190 ~V~d-~d~~~~rl~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iel~~ 237 (376)
.+++ +++++++++++|+++..+|.+..+ +.++.+||+||||+.+|+.+
T Consensus 74 ~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 74 ITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 9985 999999999999998877665432 34688999999999999975
No 64
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.64 E-value=6.2e-15 Score=119.87 Aligned_cols=120 Identities=23% Similarity=0.309 Sum_probs=85.0
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCC-ceEEEEEeeCCCCceEEEEEEecCCCCC--CCCCCCceEEEEE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-RYTNAFLGYGPEDSHFVVELTYNYGVDK--YDIGTGFGHFGIA 190 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~l~l~~~~~~~~--~~~~~g~~hi~f~ 190 (376)
+|+||+|.|.|++++++||+++|||++..+....+. ....+++.......+..+++........ .....++.|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998776543221 1123344332112234567765433221 1233568899999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 191 VED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 191 V~d---~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
|+| +++++++++++|+++..++.. ++.+.+||+||+|+.|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH---FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee---cceEEEEEECCCCCEEEeC
Confidence 985 689999999999998654332 3578899999999999985
No 65
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=5.5e-15 Score=119.92 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=84.2
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCC-CCeEEEEeecCCCCCceEEEEcccCCC--c-cccCCCceeEEEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-YKYTIAVMGYGPEDKNAVLELTYNHGV--T-EYDKGNGYAQIAI 319 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~l~~~~~~--~-~~~~g~g~~hiaf 319 (376)
.+.|++|.|.|++++.+||+++|||++......++ ..+.+ .+...+ ...+++...... . ....+.+++|++|
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 58899999999999999999999999875432222 22222 222111 244554432111 1 1123468899999
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 320 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 320 ~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
.|+|++++.++++++|+++...+..... +.+++|++||+|+.|||+|
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 9999999999999999998876533232 3578999999999999986
No 66
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.64 E-value=8.4e-15 Score=119.39 Aligned_cols=112 Identities=16% Similarity=0.261 Sum_probs=83.2
Q ss_pred ceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEe
Q 017144 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (376)
Q Consensus 112 ~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V 191 (376)
..+++|+.|.|+|++++++||+++|||++....+ . ..++..++ +..+.+.... ...+..|++|.|
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~---~~~l~~~~~~------~~~~~~h~a~~v 66 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----P--FAVVKLDN---GVSLDFAQPD------GEIPPQHYAFLV 66 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----C--EEEEEcCC---CcEEEEecCC------CCCCcceEEEEe
Confidence 4689999999999999999999999999865321 1 22333332 2345554421 123567999988
Q ss_pred C--CHHHHHHHHHHcCCeeecCCeec------CCCCeEEEEEEcCCCCEEEEeec
Q 017144 192 E--DVAKTVDLVKAKGGKVTREPGPV------KGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 192 ~--d~d~~~~rl~~~G~~i~~~p~~~------~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
+ |+++++++++++|+++...|... ..++++.+||+|||||.||+++.
T Consensus 67 ~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 67 SEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 7 59999999999999987665543 12467999999999999999975
No 67
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.63 E-value=8.5e-15 Score=117.72 Aligned_cols=111 Identities=26% Similarity=0.428 Sum_probs=86.6
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeC
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~ 192 (376)
++|+|+.|.|+|++++++||+++|||++..+.+ ..+|+..+.. .++.+.+... ...++.|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSED-DHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCC-CcEEEEEEeC-------CCCCceeEEEEcC
Confidence 479999999999999999999999999986643 3466666522 2444555443 1257889999998
Q ss_pred ---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 193 ---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 193 ---d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
+++++.++++++|+++...|...+ ++++.+|+.||+|+.+|++..
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEP-GVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCC-CCceEEEEECCCCCEEEEEEc
Confidence 578899999999999987765443 356889999999999999854
No 68
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.63 E-value=8.7e-15 Score=117.55 Aligned_cols=117 Identities=24% Similarity=0.291 Sum_probs=84.7
Q ss_pred EEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCC--CCCCCCCceEEEEEeCCH
Q 017144 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD--KYDIGTGFGHFGIAVEDV 194 (376)
Q Consensus 117 Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~--~~~~~~g~~hi~f~V~d~ 194 (376)
||+|.|+|++++++||+++|||++..+....+ ....+.+..... ....+.+....... ......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999987654222 122233332211 13455555433222 112345788999999999
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 195 d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
++++++++++|+++..+|... +.++.+|++||+|+.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREM--PYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccC--CCceEEEEECCCCCEEEEeC
Confidence 999999999999998877433 34689999999999999974
No 69
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.63 E-value=8.4e-15 Score=117.59 Aligned_cols=109 Identities=22% Similarity=0.305 Sum_probs=81.1
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeC
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~ 192 (376)
++|+||.|.|+|++++++||++ |||++..+.+ ..+|+..++.. ++.+.+... ...++.|++|.|+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~af~v~ 66 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTD-PFVYVARKG-------EKARFVGAAFEAA 66 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCc-cEEEEcccC-------CcCcccEEEEEEC
Confidence 5899999999999999999999 9999865532 23566543322 333322111 1257889999999
Q ss_pred CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 193 DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 193 d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
|.+++.+.+++.|+.+...+. .+ ++++.+||.|||||.|||+..
T Consensus 67 ~~~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 67 SRADLEKAAALPGASVIDDLE-AP-GGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CHHHHHHHHHcCCCeeecCCC-CC-CCceEEEEECCCCCEEEEEec
Confidence 999999999999998765432 23 356799999999999999854
No 70
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.63 E-value=8.8e-15 Score=118.33 Aligned_cols=113 Identities=26% Similarity=0.338 Sum_probs=84.5
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeC
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~ 192 (376)
.+|+|+.|.|+|++++++||+++|||++....+ ..+++..+.. .++.+.+... ..+++.|++|.|+
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCC-ccEEEEeccC-------CCCCCceEEEEeC
Confidence 489999999999999999999999999865432 2345554332 2344444321 1246789999995
Q ss_pred ---CHHHHHHHHHHcCCeeecCCeecC-CCCeEEEEEEcCCCCEEEEeecC
Q 017144 193 ---DVAKTVDLVKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 193 ---d~d~~~~rl~~~G~~i~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
++++++++++++|+++..+|.... .++++.++|.||+||.|||+...
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 588999999999999887764432 23567899999999999998654
No 71
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.63 E-value=1.4e-14 Score=118.54 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=87.2
Q ss_pred eeEEEEEEeCChhHHHHHHHHhc---CCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC---CCCCCCceEE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECL---GMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YDIGTGFGHF 187 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~---~~~~~g~~hi 187 (376)
+|+||+|.|.|++++++||+++| ||++..+.+ . ...|... .. +..+.+.......+ ...+.|+.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~---~~~~~~~-~~--~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D---GRSWRAG-DG--GTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c---CceEEec-CC--ceEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999876642 1 1233332 12 45666665433221 1234678999
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeecCCeec--CCCCeEEEEEEcCCCCEEEEeec
Q 017144 188 GIAVED---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 188 ~f~V~d---~d~~~~rl~~~G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
+|.|+| ++++.++++++|+++...+... ..++.+.+|++||||+.+||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999975 8899999999999998876653 23467899999999999999853
No 72
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.63 E-value=7.8e-15 Score=122.65 Aligned_cols=117 Identities=17% Similarity=0.256 Sum_probs=89.0
Q ss_pred cccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCC--
Q 017144 246 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD-- 323 (376)
Q Consensus 246 ~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~D-- 323 (376)
+|+.|.|+|++++.+||+++|||++..+... ...++...+...++.+.+.. ....+++|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 5899999999999999999999998765321 34555543322233333221 124689999999975
Q ss_pred -HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccccccc
Q 017144 324 -VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKE 374 (376)
Q Consensus 324 -l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 374 (376)
++++.++|+++|+++.++|++++.+..+++||+||+|+.|||.-..+..+|
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~~ 120 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEFAE 120 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcceecc
Confidence 467899999999999999988876666889999999999999887765554
No 73
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.62 E-value=4.7e-15 Score=117.81 Aligned_cols=113 Identities=28% Similarity=0.365 Sum_probs=84.0
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC-CCCCCCceEEEEEeCC
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVED 193 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~f~V~d 193 (376)
|+|++|.|+|++++++||+++|||++..+...+ ....++..++. ..+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 689999999999999999999999986543222 13456665543 2445554332211 1234567899999999
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEE
Q 017144 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (376)
Q Consensus 194 ~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 235 (376)
+++++++++++|+++..++.. ..+.+.+++.||+|+.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 999999999999998877654 2356789999999999986
No 74
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.62 E-value=9.6e-15 Score=119.17 Aligned_cols=119 Identities=30% Similarity=0.521 Sum_probs=87.4
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecC-CCceEEEEEeeCCCCceEEEEEEecCCC-CC-----CCCCCCceEE
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIP-EDRYTNAFLGYGPEDSHFVVELTYNYGV-DK-----YDIGTGFGHF 187 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~-----~~~~~g~~hi 187 (376)
|+||+|.|+|++++.+||+++|||++....... +.....+++..+ ...+++...... .. ...+.|..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997655432 223345667653 345666653221 11 1245789999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCC--CCEEEEee
Q 017144 188 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPD--GYKFELLE 237 (376)
Q Consensus 188 ~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPd--G~~iel~~ 237 (376)
+|.|+|+++++++++++|+++..+|.....++..++++.+|+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999999887764444444555555555 99999975
No 75
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.62 E-value=7.9e-15 Score=119.84 Aligned_cols=119 Identities=23% Similarity=0.362 Sum_probs=85.7
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCc-c---c--cCCCceeEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT-E---Y--DKGNGYAQI 317 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~-~---~--~~g~g~~hi 317 (376)
+++|+.|.|.|++++++||+++|||+.......++......++..+ ...++|....+.. . + ..+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 4789999999999999999999999987554333334455666543 2456664422111 1 1 124678899
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecC-CccCCCCCceEEEE--ECCCCCeEEEEe
Q 017144 318 AIGTDDVYKTAEAIKLSGGKITRE-PGPLPGINTKITAC--LDPDGWKSVFVD 367 (376)
Q Consensus 318 af~V~Dl~~~~~~l~~~G~~~~~~-p~~~~~~~~~~~~~--~DPdG~~iel~~ 367 (376)
+|.|+|+++++++++++|+++..+ |..-+. +.+.+++ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~-g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAG-GKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCC-CCEEEEecccccCcEEEEecC
Confidence 999999999999999999999875 333233 2355666 799999999986
No 76
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.62 E-value=1.1e-14 Score=123.80 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=90.9
Q ss_pred CCCCccccccccCChhHHHHHHHHhhCCEEeceecCC---CCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEE
Q 017144 241 TPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP---DYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQI 317 (376)
Q Consensus 241 ~~~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hi 317 (376)
.+.+++|+.|.|.|++++.+||+++|||++......+ +....+.++..+. .+..+.+... ..+.+++|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEEE
Confidence 3567999999999999999999999999986543221 1133455665432 2333333221 224689999
Q ss_pred EEEeCCHH---HHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 318 AIGTDDVY---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 318 af~V~Dl~---~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
+|.|+|++ +++++|+++|+++..++.+++.+..+.+|++||+|+.|||.....
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 99998654 689999999999998887777555688999999999999987653
No 77
>PRK06724 hypothetical protein; Provisional
Probab=99.62 E-value=1.8e-14 Score=118.41 Aligned_cols=113 Identities=16% Similarity=0.225 Sum_probs=79.4
Q ss_pred cceeeEEEEEEeCChhHHHHHHHHhc---CCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEE
Q 017144 111 DKRRMLHVVYRVGDLDKTIKFYTECL---GMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 187 (376)
Q Consensus 111 ~~~~i~Hv~l~v~Dl~~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi 187 (376)
+..+|+||+|.|+|++++++||+++| ||+...... + . .. ...+.+...... .....|..|+
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~-~--~g--~~~l~l~~~~~~--~~~~~g~~h~ 67 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------Y-S--TG--ESEIYFKEVDEE--IVRTLGPRHI 67 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------e-e--CC--CeeEEEecCCcc--ccCCCCceeE
Confidence 45689999999999999999999966 666532111 1 1 11 112222211110 1123578899
Q ss_pred EEEe---CCHHHHHHHHHHcCCeeecCCeecC--CCCeEEEEEEcCCCCEEEEeecC
Q 017144 188 GIAV---EDVAKTVDLVKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 188 ~f~V---~d~d~~~~rl~~~G~~i~~~p~~~~--~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
||.| +|+|+++++++++|+++..+|...+ +++.+.+||+||||+.||+....
T Consensus 68 af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 68 CYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 9998 6799999999999999987776544 24558899999999999998663
No 78
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.61 E-value=1.3e-14 Score=117.70 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=80.1
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEe----cCCCCCCCCCCCceEEEE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTY----NYGVDKYDIGTGFGHFGI 189 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~----~~~~~~~~~~~g~~hi~f 189 (376)
++.|+.|.|+|++++.+||+++|||++..+.+ . .. .+. +. ..+.+.. .....+...+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~---~~-~~~-~~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E---NV-TFE-GG----FALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c---eE-EEe-cc----ceeccchhhhccCCcccccccCCceEEEE
Confidence 78999999999999999999999999864322 1 11 111 11 1111110 000111122345579999
Q ss_pred EeCCHHHHHHHHHHcCC-eeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 190 AVEDVAKTVDLVKAKGG-KVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 190 ~V~d~d~~~~rl~~~G~-~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
.|+|+++++++|+++|+ ++..+|...++ +.+.++|+|||||.|||.++
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 99999999999999986 68777777664 56899999999999999865
No 79
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.60 E-value=5.4e-14 Score=116.17 Aligned_cols=120 Identities=25% Similarity=0.422 Sum_probs=86.2
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCC
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED 193 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d 193 (376)
+|+||.|.|+|++++++||+++|||++....+. ....|+..+.. .+..+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPD-EHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCC-CceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765431 13456655411 1345555554332211234578899999998
Q ss_pred HH---HHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCC
Q 017144 194 VA---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (376)
Q Consensus 194 ~d---~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 241 (376)
++ +++++|.++|+++..++. . +.++.+|++||+||.||++...+.
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~--~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-H--GNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-C--CceeEEEEECCCCCEEEEEEcCCC
Confidence 65 577899999998776432 2 346889999999999999976543
No 80
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.60 E-value=1.5e-14 Score=117.63 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=83.1
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 322 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~ 322 (376)
.++.|+.|.|+|++++.+||+++|||++..... +. . .++.......+..+.+.. ....+..|++|.|+
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~-~~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v~ 70 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--R-VYLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKVL 70 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--e-EEEEccCCCcccEEEecc-------CCCCCeeEEEEEeC
Confidence 468999999999999999999999999865421 11 1 223322212233444422 12357889999997
Q ss_pred ---CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 323 ---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 ---Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
|+++++++++++|+++...|.....+.++.+||+|||||.|||....
T Consensus 71 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 71 DDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 89999999999999988766543333347899999999999998754
No 81
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.60 E-value=2e-14 Score=115.17 Aligned_cols=114 Identities=25% Similarity=0.305 Sum_probs=84.1
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCH
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDV 324 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl 324 (376)
+.|++|.|+|++++++||+++||+++..... +...+ .++..++ ...+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4699999999999999999999999865442 12223 3344332 1223333221111 2345677999999999
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 325 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 325 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
++++++++++|+++..+|...+++ ++.++++|||||.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGV-GRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCc-EEEEEEECCCCCEEEeEC
Confidence 999999999999999988766643 589999999999999975
No 82
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.60 E-value=2.3e-14 Score=122.63 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=84.7
Q ss_pred CCCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEe
Q 017144 242 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 321 (376)
Q Consensus 242 ~~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V 321 (376)
|.+++|++|.|+|++++++||+++|||++......+.......++...+ ....+.+.. ..++++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 3568999999999999999999999999875443323333334444322 123333321 2346789999999
Q ss_pred CC---HHHHHHHHHHcCCe--eecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 322 DD---VYKTAEAIKLSGGK--ITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 322 ~D---l~~~~~~l~~~G~~--~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
+| +++++++|+++|++ +..+|+.+.....+++|++|||||.|||+...-
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~ 125 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDY 125 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCc
Confidence 75 77888999999986 334555554434578999999999999986553
No 83
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.58 E-value=2.4e-14 Score=116.38 Aligned_cols=109 Identities=28% Similarity=0.456 Sum_probs=79.6
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEe--
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV-- 191 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V-- 191 (376)
+|+|+.|.|+|++++.+||+++|||++....+ ...++..+. .. +.+...... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~--~~--~~l~~~~~~---~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGD--LW--LCLSVDANV---GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCC--EE--EEEecCCCC---CCCCCeeeEEEEeCH
Confidence 58999999999999999999999999876543 234555442 12 233221111 1235678999998
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecC
Q 017144 192 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 192 ~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
+|+++++++++++|+++..++.. .++.+||.|||||.|||....
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC----CccEEEEECCCCCEEEEEeCC
Confidence 47999999999999988654332 246899999999999998654
No 84
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=5.5e-14 Score=114.42 Aligned_cols=115 Identities=19% Similarity=0.288 Sum_probs=79.0
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecC--------CC--CCCCCCCCc
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY--------GV--DKYDIGTGF 184 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~--------~~--~~~~~~~g~ 184 (376)
+.|+.|.|+|++++.+||+++|||++....+ ...+.. +..+. ..+.+.... .. .......+.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETGE----TTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCCc----EEEEEEcccccccccccCccCCccccCCCc
Confidence 5799999999999999999999999864322 111211 11111 111111110 00 111112334
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 185 GHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 185 ~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
.|++|.|+|+++++++++++|+++..+|...++ +.+.++++|||||.|+++++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPW-GQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCC-CcEEEEEECCCCCEEEEecC
Confidence 589999999999999999999999888776665 45778999999999999864
No 85
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=4e-14 Score=113.62 Aligned_cols=117 Identities=25% Similarity=0.330 Sum_probs=85.3
Q ss_pred ccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCc--cccCCCceeEEEEEeCCH
Q 017144 247 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT--EYDKGNGYAQIAIGTDDV 324 (376)
Q Consensus 247 ~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~--~~~~g~g~~hiaf~V~Dl 324 (376)
|+.|.|.|++++.+||+++|||++........ ...+..+...+. ....+.+....... ....+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 78999999999999999999999986543222 233444442211 13455554332221 112345788999999999
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 325 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 325 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
++++++++++|+++..++.+.++ ++.+|++||+|+.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 99999999999999988744443 589999999999999975
No 86
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.57 E-value=6e-14 Score=113.30 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=80.3
Q ss_pred EEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCC--C---CCCCCCCceEEEEEe
Q 017144 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV--D---KYDIGTGFGHFGIAV 191 (376)
Q Consensus 117 Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~--~---~~~~~~g~~hi~f~V 191 (376)
++.|.|+|++++.+||+++|||++....+ ....+..++. ...+.+...... + ....+.+ .|++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~-~~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQG-LILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCC--ceEEEEccCCCCCCcchhcccCCce-EEEEEEE
Confidence 67899999999999999999999875421 1233433322 244444432211 1 1112233 4899999
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 192 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 192 ~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
+|+++++++++++|+++..+|...++ +.+.++++||+|+.|||+|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 99999999999999998877776654 5688999999999999985
No 87
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=6.5e-14 Score=113.39 Aligned_cols=114 Identities=27% Similarity=0.372 Sum_probs=82.5
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCC------CCCCCCCceEEE
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD------KYDIGTGFGHFG 188 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~------~~~~~~g~~hi~ 188 (376)
|.||+|.|.|++++++||+++|||++..+. ++ ..+++..++. ..+.++...... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~--~~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DR--RLAFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CC--ceEEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 579999999999999999999999987641 11 2456666553 234444322110 111235788999
Q ss_pred EEeC--CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 189 IAVE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 189 f~V~--d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
|.++ |++++++++.++|+++...+. . .++++.+|++||+|+.+|++++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~-~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-W-PRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-C-CCCeeEEEEECCCCCEEEEecC
Confidence 9985 799999999999999876544 2 3356889999999999999863
No 88
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.57 E-value=4.1e-14 Score=113.15 Aligned_cols=109 Identities=24% Similarity=0.400 Sum_probs=78.8
Q ss_pred EEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeC--CH
Q 017144 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE--DV 194 (376)
Q Consensus 117 Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~--d~ 194 (376)
||.|.|+|++++++||+++|||++..+.+ ...++..+ ...+.+....... ..+.+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~----~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELA----GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEec----CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999875542 23444443 2344444332211 12356789999995 69
Q ss_pred HHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 195 AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 195 d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
++++++++++|+++...+... .+.++.+|++||||+.||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRV-QGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCcccc-CCCceEEEEECCCCCEEEEEeC
Confidence 999999999999986443222 2346899999999999999853
No 89
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.57 E-value=7.5e-14 Score=111.81 Aligned_cols=107 Identities=20% Similarity=0.282 Sum_probs=75.4
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEE--EEe
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFG--IAV 191 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~--f~V 191 (376)
+|+||+|.|+|++++++||+ +|||++..+.+ ...+...+.. +..+.+.... ..++.|++ +.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD------GLELRTAGND--HRWARLLEGA-------RKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------ceEEEecCCC--ceEEEeecCC-------CCceeeEEEEeEh
Confidence 69999999999999999997 69999865432 2233332322 3344444321 23455544 455
Q ss_pred CCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecC
Q 017144 192 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 192 ~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
+|+++++++++++|+++..++ .+ ...+.+||.||+||.|||....
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~--~~-~~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAP--PG-ADPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhHHHHHHHHHHcCCceecCC--Cc-CCCCEEEEECCCCCEEEEecCC
Confidence 899999999999999987654 22 2345789999999999998543
No 90
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.57 E-value=8.7e-14 Score=114.71 Aligned_cols=115 Identities=20% Similarity=0.289 Sum_probs=86.9
Q ss_pred cccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHH
Q 017144 246 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVY 325 (376)
Q Consensus 246 ~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~ 325 (376)
+|+.|.|.|++++.+||+++||+++......+ +.....++..++ .+..+.+... ...++..|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~------~~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPG------PERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcC------CCCCCeeEEEEEcCCHH
Confidence 58999999999999999999999987654433 223444555432 2334444331 11568899999999864
Q ss_pred ---HHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 326 ---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 326 ---~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
+++++++++|+++..+|...+.+..++++++||+|+.|||.+..
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCC
Confidence 68899999999999888766655468899999999999998876
No 91
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.56 E-value=7.1e-14 Score=113.31 Aligned_cols=116 Identities=22% Similarity=0.360 Sum_probs=84.5
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCC---ccccCCCceeEEEEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV---TEYDKGNGYAQIAIG 320 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~---~~~~~g~g~~hiaf~ 320 (376)
+++|+.|.|.|++++.+||+++|||+.....+.+ .+.. +..+ ...+++...... .....+.+..|++|.
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~--~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~ 74 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKA--LRFG----SQKINLHPVGGEFEPAAGSPGPGSDDLCLI 74 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceE--EEeC----CEEEEEecCCCccCcCccCCCCCCceEEEE
Confidence 5899999999999999999999999987553321 1222 2222 134555432221 112345678999999
Q ss_pred eCC-HHHHHHHHHHcCCeeecCCccCCC--CCceEEEEECCCCCeEEEEe
Q 017144 321 TDD-VYKTAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 321 V~D-l~~~~~~l~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iel~~ 367 (376)
+++ +++++++++++|+++..+|....+ +..+.+||+||||+.||+++
T Consensus 75 ~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 75 TEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred ecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 975 999999999999999887765432 22478999999999999986
No 92
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.56 E-value=1.3e-13 Score=111.94 Aligned_cols=115 Identities=24% Similarity=0.262 Sum_probs=83.9
Q ss_pred cccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccc----cCCCceeEEEEEeCC
Q 017144 248 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEY----DKGNGYAQIAIGTDD 323 (376)
Q Consensus 248 v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~----~~g~g~~hiaf~V~D 323 (376)
..|.|.|++++++||+++||+++......+++......+..+ ...+.+......... ..+++..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 357899999999999999999998665343433333334432 223444332211111 234567899999999
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 324 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 324 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
+++++++++++|++++.+|...+.+ .+.++++|||||.|+|.+
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 9999999999999999988777765 488999999999999964
No 93
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.56 E-value=9.1e-14 Score=110.09 Aligned_cols=108 Identities=23% Similarity=0.273 Sum_probs=77.3
Q ss_pred EEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHHHHHH
Q 017144 120 YRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVD 199 (376)
Q Consensus 120 l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d~~~~ 199 (376)
|.|+|++++++||+++|||++....+ ..+.+..+.....-...+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999987433 22334433210011222332211 12234678899999999999999
Q ss_pred HHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 200 LVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 200 rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
+++++|+++..+|...++ +.+.+++.|||||.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 999999999888888665 578999999999999986
No 94
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.56 E-value=1.4e-13 Score=110.02 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=80.4
Q ss_pred EEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHHH
Q 017144 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAK 196 (376)
Q Consensus 117 Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d~ 196 (376)
+..|.|+|++++++||+++|||++....+ ...++..+.. .++.+.+...... +....|++|.|+|+++
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~i~~~v~d~~~ 70 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDHG------WIATFASPQN-MTVQVSLATEGGT-----ATVVPDLSIEVDDVDA 70 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcCC------ceEEEeecCC-CCcEEEEecCCCC-----CCCCCEEEEEeCCHHH
Confidence 34689999999999999999999864311 2334443332 2344555433211 2345699999999999
Q ss_pred HHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 197 TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 197 ~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
++++++++|+++..+|...++ +.+.+|+.||+||.|++.++
T Consensus 71 ~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 71 ALARAVAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHHhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 999999999999887766554 56788999999999999975
No 95
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.56 E-value=7.7e-15 Score=119.33 Aligned_cols=120 Identities=28% Similarity=0.320 Sum_probs=82.2
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceec--CCCCCeEEEEeecCCCCCceEEEEcccCCCccccC---CCceeEEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRD--NPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDK---GNGYAQIA 318 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~---g~g~~hia 318 (376)
+|+|++|.|.|++++.+||+++|||++..... .........++..+. ....+............. ..+.+|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE--GHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS--SCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc--cceeeeeeccccccccccccccccceeEE
Confidence 37899999999999999999999999997765 222333444444332 223332222211111110 01345666
Q ss_pred EEe---CCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEE
Q 017144 319 IGT---DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 365 (376)
Q Consensus 319 f~V---~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 365 (376)
+.+ +|+++++++|++.|+++..+|.+...+...++|++||+|+.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 655 57888999999999999999877776655667899999999997
No 96
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.55 E-value=4.2e-13 Score=108.97 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=82.3
Q ss_pred EEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC----CCCCCCceEEEEEeCC
Q 017144 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK----YDIGTGFGHFGIAVED 193 (376)
Q Consensus 118 v~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~----~~~~~g~~hi~f~V~d 193 (376)
-.|.|+|++++++||+++|||++......+++....+.+..++. .+.+........ .....+..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDG----GVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCE----EEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 46899999999999999999999866533333323334554421 233332211111 1133456789999999
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 194 ~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
+++++++++++|+++..+|...+. +.+.++++|||||.|+|.+
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~-g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPY-GSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCC-CcEEEEEECCCCCEEEEec
Confidence 999999999999999988877765 4678899999999999863
No 97
>PRK06724 hypothetical protein; Provisional
Probab=99.55 E-value=7.4e-14 Score=114.71 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=78.0
Q ss_pred CCccccccccCChhHHHHHHHHhh---CCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEE
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAF---GMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAI 319 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~l---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf 319 (376)
..++|++|.|+|++++.+||+++| |++.........+ ...+.+....+ ......+..|++|
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g--------------~~~l~l~~~~~--~~~~~~g~~h~af 69 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG--------------ESEIYFKEVDE--EIVRTLGPRHICY 69 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC--------------CeeEEEecCCc--cccCCCCceeEEE
Confidence 468999999999999999999966 6665321111111 11222211111 0112346789999
Q ss_pred Ee---CCHHHHHHHHHHcCCeeecCCccCCC--CCceEEEEECCCCCeEEEEeccc
Q 017144 320 GT---DDVYKTAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 320 ~V---~Dl~~~~~~l~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
.| +|++++.++++++|+++..+|...+. .+.+.+||+|||||.|||+..+.
T Consensus 70 ~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~~ 125 (128)
T PRK06724 70 QAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTPN 125 (128)
T ss_pred ecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCCC
Confidence 98 78999999999999999888865442 22378899999999999987643
No 98
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.55 E-value=1.4e-13 Score=111.83 Aligned_cols=114 Identities=25% Similarity=0.291 Sum_probs=79.8
Q ss_pred eEEEEEEeCChhHHHHHHHHh---cCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEe
Q 017144 115 MLHVVYRVGDLDKTIKFYTEC---LGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 191 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V 191 (376)
|+||.|.|+|++++++||+++ |||++..+.. + ..+++..+.. ...+.+......... ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~---~~~~~~~~~~--~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P---GAVGYGKGGG--GPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C---ceeEeccCCC--CceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999998 6998865431 1 1233333222 234444443221111 223457999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeecCC--CCeEEEEEEcCCCCEEEEe
Q 017144 192 ED---VAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 192 ~d---~d~~~~rl~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iel~ 236 (376)
+| ++++.+++.++|+.+..+|...+. ...+.+||+|||||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 97 778899999999998877766543 3456889999999999986
No 99
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.55 E-value=8.9e-14 Score=113.40 Aligned_cols=119 Identities=23% Similarity=0.375 Sum_probs=86.1
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCC-CCCeEEEEeecCCCCCceEEEEcccCCC-cc-----ccCCCceeEE
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP-DYKYTIAVMGYGPEDKNAVLELTYNHGV-TE-----YDKGNGYAQI 317 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~l~~~~~~-~~-----~~~g~g~~hi 317 (376)
++|++|.|.|++++.+||+++|||++......+ ......+++..+ +..+++...... .. ...+++..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997654432 233445566532 355665543221 11 1346788999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCC--CCeEEEEe
Q 017144 318 AIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPD--GWKSVFVD 367 (376)
Q Consensus 318 af~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPd--G~~iel~~ 367 (376)
+|.|+|+++++++++++|+++..+|...+.+..+++++.||+ |++|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999999988764444433444555555 99999985
No 100
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.55 E-value=7.4e-14 Score=110.85 Aligned_cols=113 Identities=25% Similarity=0.217 Sum_probs=81.5
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCcc-ccCCCceeEEEEEeCC
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-YDKGNGYAQIAIGTDD 323 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~g~g~~hiaf~V~D 323 (376)
|+|++|.|.|++++.+||+++|||++......+.. . .++..++ ...+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~-~--~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFP-G--AWLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCC-c--eEEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 57999999999999999999999998754332211 1 2333322 12445543322211 1234577899999999
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEE
Q 017144 324 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 365 (376)
Q Consensus 324 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 365 (376)
+++++++++++|+++..++.+.++ .+.+|++||+|+.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVPGDG--VRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCCCCC--ccEEEEECCCCCEEeC
Confidence 999999999999999887654222 4789999999999996
No 101
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.55 E-value=9e-14 Score=115.92 Aligned_cols=115 Identities=22% Similarity=0.289 Sum_probs=84.7
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC-
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD- 322 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~- 322 (376)
++.|+.|.|+|++++.+||+++|||++.... . ...++..+ +..+.+...........+.+..|++|.++
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~~ 73 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVKG----R--KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIEE 73 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEeec----C--eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEecH
Confidence 5889999999999999999999999986431 1 12333322 24444433222111122456789999997
Q ss_pred -CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 323 -DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 -Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
|+++++++++++|+++..+|...+.+ .+.+|++|||||.|||.+..
T Consensus 74 ~dv~~~~~~l~~~G~~i~~~~~~~~~~-~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 74 EDFDHWYQRLKENDVNILPGRERDERD-KKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHHHCCceEcCCccccCCC-ceEEEEECCCCCEEEEEeCC
Confidence 99999999999999988777665543 58999999999999998754
No 102
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.54 E-value=5.1e-13 Score=108.04 Aligned_cols=115 Identities=22% Similarity=0.206 Sum_probs=84.6
Q ss_pred EEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCC-C-CCCCCCCceEEEEEeCCHH
Q 017144 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-D-KYDIGTGFGHFGIAVEDVA 195 (376)
Q Consensus 118 v~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~-~~~~~~g~~hi~f~V~d~d 195 (376)
..|.|.|++++.+||+++|||++......+++......+..++ ..+.+...... . ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 3588999999999999999999987765444443444455443 23444432111 0 1123356679999999999
Q ss_pred HHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 196 KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 196 ~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
++++++.+.|+++..+|...+. +.+.++++||+|+.|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCcccccc-cceEEEEECCCCCEEEEec
Confidence 9999999999999888766554 6789999999999999986
No 103
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.54 E-value=1.2e-13 Score=112.33 Aligned_cols=113 Identities=26% Similarity=0.370 Sum_probs=76.0
Q ss_pred EEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCC---C-C-CCCCCCceEEE--E
Q 017144 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV---D-K-YDIGTGFGHFG--I 189 (376)
Q Consensus 117 Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~---~-~-~~~~~g~~hi~--f 189 (376)
||+|.|+|++++++||+++|||++..... ..+.+..++ ....+.+...... . . .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------TWVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------CcccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 99999999999999999999999864321 112232221 2333433322110 0 0 01123456765 4
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeecC---CCCeEEEEEEcCCCCEEEEee
Q 017144 190 AVEDVAKTVDLVKAKGGKVTREPGPVK---GGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 190 ~V~d~d~~~~rl~~~G~~i~~~p~~~~---~~~~~~~~~~DPdG~~iel~~ 237 (376)
.++|+++++++|+++|+++..+|.... .++.+.+||+|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 567899999999999999987765432 234688999999999999963
No 104
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.54 E-value=1.3e-13 Score=111.96 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=83.5
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCC-CeEEEEeecCCCCCceEEEEcccCCCcc--ccCCCceeEEEEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDY-KYTIAVMGYGPEDKNAVLELTYNHGVTE--YDKGNGYAQIAIG 320 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~l~~~~~~~~--~~~g~g~~hiaf~ 320 (376)
.+.|+.|.|.|++++++||+++|||+.......++. .....++.......+..++|........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 378999999999999999999999998766543321 1222333322112345666654332211 1223467899999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEE
Q 017144 321 TD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 366 (376)
Q Consensus 321 V~---Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 366 (376)
|+ |+++++++++++|+++..++. ..+ .+.+|++||+|+.|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~~~--~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-HFG--ERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-ecc--eEEEEEECCCCCEEEeC
Confidence 98 579999999999999875443 322 58899999999999985
No 105
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.53 E-value=3e-13 Score=109.46 Aligned_cols=112 Identities=27% Similarity=0.415 Sum_probs=79.5
Q ss_pred EEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCC--
Q 017144 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED-- 193 (376)
Q Consensus 116 ~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d-- 193 (376)
.|+.|.|+|++++.+||+++||++...+.+ . ...|.. +.. .+.+.+...... ...++.|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~-~~~~~~-~~~--~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----D-YAKFLL-EDP--RLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----C-eeEEEe-cCC--ceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999998865432 1 223332 222 233334332111 11578899999988
Q ss_pred -HHHHHHHHHHcCCeeecCCeecC-CCCeEEEEEEcCCCCEEEEeecC
Q 017144 194 -VAKTVDLVKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 194 -~d~~~~rl~~~G~~i~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
++++++++.++|+++...|.... .+..+.+|++||+||.|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78889999999999876654332 22357899999999999999743
No 106
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.53 E-value=1.5e-13 Score=118.14 Aligned_cols=121 Identities=20% Similarity=0.158 Sum_probs=85.7
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 322 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~ 322 (376)
.+++|+.|.|+|++++++||+++|||++......+.+.....++.... ....+.+... . .....+++|++|.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~--~--~~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRD--P--AGARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecC--C--CCCCCCceEEEEECC
Confidence 458999999999999999999999999876543333323334444322 1223333221 1 112246789999998
Q ss_pred C---HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 323 D---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 D---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
| +++++++|+++|+++..+|..+......++|++||+|+.|||++..
T Consensus 79 ~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 79 TREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred CHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 5 5578899999999988777665543345799999999999999873
No 107
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.53 E-value=1.9e-13 Score=116.40 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=84.1
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCcc-ccCCCceeEEEEEeC
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-YDKGNGYAQIAIGTD 322 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~g~g~~hiaf~V~ 322 (376)
.++|+.|.|+|++++.+||+++|||++..... . .+.+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 37899999999999999999999999875432 1 222333221 2246666655322211 122357889999998
Q ss_pred C---HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 323 D---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 D---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
| +++++++|+++|+++. ++..+++ .+.+||+||||+.|||+...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~-~~~~~~~--~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVS-GIVDRFY--FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCcc-ccccccc--EEEEEEECCCCcEEEEEECC
Confidence 8 8999999999999854 3333333 47899999999999999865
No 108
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.53 E-value=2e-13 Score=114.59 Aligned_cols=114 Identities=16% Similarity=0.292 Sum_probs=84.8
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 322 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~ 322 (376)
..+.|+.|.|.|++++.+||+++|||++..... . ...++..+.. +..+.+... ...++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCCC--cceEEEccC-------CCCceEEEEEECC
Confidence 468999999999999999999999999864321 1 2234544322 333444321 2357889999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 323 DVYKTA---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 323 Dl~~~~---~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
|++++. ++|+++|+++..++..+..+..+++||+||+||.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 877765 899999999988776554444578999999999999998764
No 109
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.53 E-value=1.2e-13 Score=112.01 Aligned_cols=113 Identities=13% Similarity=0.191 Sum_probs=79.5
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcc----cCCCccccCCCceeEEEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTY----NHGVTEYDKGNGYAQIAI 319 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~----~~~~~~~~~g~g~~hiaf 319 (376)
++.++.|.|.|++++.+||+++||+++.... +. . ..+ .. ...+.+.. .........+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~--~~--~-~~~-~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDF--GE--N-VTF-EG-----GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeecc--Cc--e-EEE-ec-----cceeccchhhhccCCcccccccCCceEEEE
Confidence 3568899999999999999999999985322 11 1 111 11 11111110 001111223445679999
Q ss_pred EeCCHHHHHHHHHHcCC-eeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 320 GTDDVYKTAEAIKLSGG-KITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 320 ~V~Dl~~~~~~l~~~G~-~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
.|+|+++++++|+++|+ ++..+|...+++ .+.++|+|||||+|||.+.
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 99999999999999986 788888777765 5899999999999999874
No 110
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.52 E-value=3.6e-13 Score=110.17 Aligned_cols=117 Identities=23% Similarity=0.288 Sum_probs=85.0
Q ss_pred CccccccccCChhHHHHHHHHhh---CCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCcc---ccCCCceeEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAF---GMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE---YDKGNGYAQI 317 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~l---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~---~~~g~g~~hi 317 (376)
+++|+.+.|.|++++.+||+++| ||++..... + ...+... ..+..+.+........ ...+.+..|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG-----DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec-----CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 47899999999999999999999 999875531 1 1122111 1245666654333211 1345678999
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCccC--CCCCceEEEEECCCCCeEEEEec
Q 017144 318 AIGTD---DVYKTAEAIKLSGGKITREPGPL--PGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 318 af~V~---Dl~~~~~~l~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
+|.|+ |+++++++++++|+++...+... .....+.+|++||+|++|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 99996 58899999999999999877642 22235889999999999999864
No 111
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=3e-13 Score=110.08 Aligned_cols=115 Identities=21% Similarity=0.303 Sum_probs=79.7
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccC--------C--CccccCCCce
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNH--------G--VTEYDKGNGY 314 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~--------~--~~~~~~g~g~ 314 (376)
+.|+.|.|.|++++.+||+++|||+...... +..+.. +..+ ...+.+.... . .......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 4689999999999999999999999864322 112221 1111 1122121100 0 0011122345
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 315 AQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 315 ~hiaf~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
.|++|.|+|+++++++++++|+++..+|...+.+ .+.++++|||||.|||+++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 6999999999999999999999998888766665 4788999999999999874
No 112
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.51 E-value=5e-13 Score=106.35 Aligned_cols=109 Identities=28% Similarity=0.333 Sum_probs=79.6
Q ss_pred EEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHHHHH
Q 017144 119 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTV 198 (376)
Q Consensus 119 ~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d~~~ 198 (376)
.|.|+|++++++||+++|||++....+ .. ...++..+ +..+.+......... ...+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 589999999999999999999876543 11 23445433 234555544322211 2345668999999999999
Q ss_pred HHHHHcCCe-eecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 199 DLVKAKGGK-VTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 199 ~rl~~~G~~-i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
++++++|++ +..++...++ +.+.++++||+|+.||++|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999999998 5556555543 5688899999999999975
No 113
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.51 E-value=2.6e-13 Score=110.10 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=80.7
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 322 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~ 322 (376)
..++|+.|.|+|++++.+||+++|||++....+ . ..++...+......+.+.. ...++..|++|.|+
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v~ 71 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRAS 71 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCCCccEEEEee-------CCCCceEEEEEEcC
Confidence 468999999999999999999999999875432 1 2334332222234444432 12357899999996
Q ss_pred ---CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 323 ---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 ---Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
|++++.++++++|+++...+..... ++.+||+|||||.|||+-..
T Consensus 72 ~~~~v~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 72 SPEALERRVAALEASGLGIGWIEGDPGH--GKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CHHHHHHHHHHHHHcCCccccccCCCCC--cceEEEECCCCCEEEEEEec
Confidence 6889999999999987544332222 46789999999999998643
No 114
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.51 E-value=5.1e-13 Score=104.99 Aligned_cols=112 Identities=32% Similarity=0.426 Sum_probs=85.0
Q ss_pred EEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHHH
Q 017144 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAK 196 (376)
Q Consensus 117 Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d~ 196 (376)
|+++.|+|++++.+||+++|||++...... .....+++..+ ...+++...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 899999999999999999999998776532 11244555544 345666664433221235678899999999999
Q ss_pred HHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEE
Q 017144 197 TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (376)
Q Consensus 197 ~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 235 (376)
+.++|.++|+.+..++.. ...+.+.+++.||+|+.|+|
T Consensus 75 ~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 999999999998876652 23467899999999999985
No 115
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.50 E-value=7.8e-13 Score=106.95 Aligned_cols=114 Identities=25% Similarity=0.252 Sum_probs=84.0
Q ss_pred ccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCC--ccccCCCceeEEEEEeCCHHH
Q 017144 249 MLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV--TEYDKGNGYAQIAIGTDDVYK 326 (376)
Q Consensus 249 ~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~--~~~~~g~g~~hiaf~V~Dl~~ 326 (376)
.|.|.|++++.+||+++||+++......+++......+..+ +..+.+...... .....+.+..|++|.|+|+++
T Consensus 6 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~~ 81 (122)
T cd07246 6 YLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVDA 81 (122)
T ss_pred EEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHHH
Confidence 47789999999999999999997665444444444444432 234555432111 011234567899999999999
Q ss_pred HHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 327 TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 327 ~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
+++++.+.|+++..+|...+++ .+.++++||+|++|+|.+
T Consensus 82 ~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 82 TFARAVAAGATSVMPPADQFWG-DRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHCCCeEecCccccccc-ceEEEEECCCCCEEEEec
Confidence 9999999999999888655554 589999999999999986
No 116
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.50 E-value=2.9e-13 Score=111.68 Aligned_cols=114 Identities=23% Similarity=0.281 Sum_probs=81.0
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC--
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD-- 322 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~-- 322 (376)
|.||.|.|+|++++.+||+++|||++.... +. . .++..+ +..+.+.............+..|++|.|+
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~--~~--~--~~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG--EK--T--AYFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC--Cc--c--ceEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 579999999999999999999999986432 11 1 123322 24444433222111112347789999997
Q ss_pred CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 323 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
|+++++++++++|+++..++..... ..+.+||+|||||.|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCc
Confidence 4999999999999998765543332 247899999999999998865
No 117
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.50 E-value=2.7e-13 Score=109.85 Aligned_cols=114 Identities=22% Similarity=0.194 Sum_probs=81.7
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEe-
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT- 321 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V- 321 (376)
.++.|+.|.|+|++++.+||+++|||++..... .. .++..........+.+.. ...++..|++|.|
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DR--IYLRGLEEFIHHSLVLTK-------APVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----Ce--EEEEecCCCceEEEEEee-------CCCCceeEEEEECC
Confidence 358899999999999999999999999865421 12 233321111223333322 1235788999998
Q ss_pred --CCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 322 --DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 322 --~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
+|+++++++++++|+++...|.....+..+.+|+.|||||+|||+...
T Consensus 70 ~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 70 SEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 578999999999999998765444333347899999999999998653
No 118
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.50 E-value=1.1e-12 Score=120.54 Aligned_cols=223 Identities=18% Similarity=0.221 Sum_probs=142.7
Q ss_pred ceeeEEEEEEeCCh-hHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCC--CC--CCCCCCceE
Q 017144 112 KRRMLHVVYRVGDL-DKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV--DK--YDIGTGFGH 186 (376)
Q Consensus 112 ~~~i~Hv~l~v~Dl-~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~--~~--~~~~~g~~h 186 (376)
..++.+|.+.|+|. ++..+.+ ..|||+...+--.. ....++.|+ +.+-+...... .. ..+|++..-
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~-~~lGF~~~~~Hrsk----~v~l~rQGd----inlvvn~~~~s~a~~f~~~Hgps~~a 90 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALL-GQLGFTAVAKHRSK----AVTLYRQGD----INLVVNAEPDSFAAEFLDKHGPSACA 90 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHH-HHhCcccccccccc----ceeEEEeCC----EEEEEcCCCcchhhHHHHhcCCchhe
Confidence 56899999999999 5555555 55999876432111 122223231 22222222211 11 137888999
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCe-----ecC---CCCeEEEEEEcCCC-CE---EEEeec--CCC--C---CCccc
Q 017144 187 FGIAVEDVAKTVDLVKAKGGKVTREPG-----PVK---GGNTVIAFIEDPDG-YK---FELLER--GPT--P---EPLCQ 247 (376)
Q Consensus 187 i~f~V~d~d~~~~rl~~~G~~i~~~p~-----~~~---~~~~~~~~~~DPdG-~~---iel~~~--~~~--~---~~~~~ 247 (376)
++|.|+|...+.++.++.|.+....+. +++ +-++..+||.|.+| .. .++... .+. . ..|+|
T Consensus 91 ~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDH 170 (363)
T COG3185 91 MAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDH 170 (363)
T ss_pred eEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeech
Confidence 999999999999999999985543322 111 23567888988884 21 122222 111 1 26899
Q ss_pred ccccc--CChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCcc-------ccCCCceeEEE
Q 017144 248 VMLRV--GDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-------YDKGNGYAQIA 318 (376)
Q Consensus 248 v~L~v--~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-------~~~g~g~~hia 318 (376)
+++.| ..++.+..||+++|||+.....+.++..-.+..-.....++...+.|........ ...|.|++|||
T Consensus 171 l~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQHIA 250 (363)
T COG3185 171 LTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQHIA 250 (363)
T ss_pred hhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcceEEE
Confidence 99987 5899999999999999999877655432222211211222334444443322221 24789999999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCc
Q 017144 319 IGTDDVYKTAEAIKLSGGKITREPG 343 (376)
Q Consensus 319 f~V~Dl~~~~~~l~~~G~~~~~~p~ 343 (376)
|.++|+.++++++++.|++++..|.
T Consensus 251 ~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 251 FGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred ecccHHHHHHHHHHHcCCccCCCch
Confidence 9999999999999999999998763
No 119
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.50 E-value=5.6e-13 Score=107.12 Aligned_cols=120 Identities=28% Similarity=0.359 Sum_probs=89.5
Q ss_pred CCCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEe
Q 017144 242 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 321 (376)
Q Consensus 242 ~~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V 321 (376)
+..+.|..|.+.|++++.+||+++|||+..+..+..+.++ ..+..+....+..+.-. ....++...+++.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y--~~f~~~~~~~gG~l~~~-----~~~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRY--AVFPADGAGAGGGLMAR-----PGSPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceE--EEEECCCccccceeccC-----CcCCCCCCCEEEEEec
Confidence 5678899999999999999999999999976644333333 33332221111222111 0122336778999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 322 DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 322 ~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
+|++++.++++++|++++.++.+.|++ ++++.+.||.||+|.|.+..
T Consensus 80 ~did~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 999999999999999999999888854 58999999999999998754
No 120
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.49 E-value=2.4e-13 Score=111.06 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=80.8
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 322 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~ 322 (376)
..++|++|.|+|++++.+||+++|||++..+.. . ..++..+. .+..+.+... .++..|++|+|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~--~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTA----K--ATYFRSDA--RDHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----C--eEEEEcCC--ccEEEEEEeC--------CCceEEEEEEEC
Confidence 358999999999999999999999999864421 1 23454332 2333444321 145679999997
Q ss_pred C---HHHHHHHHHHcCCeeecCCccCC--CCCceEEEEECCCCCeEEEEecc
Q 017144 323 D---VYKTAEAIKLSGGKITREPGPLP--GINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 D---l~~~~~~l~~~G~~~~~~p~~~~--~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
| +++++++++++|+++..++.+.. .+..+++||+|||||.||++.++
T Consensus 69 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 69 DDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 5 99999999999999887654211 12246789999999999998765
No 121
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=5.6e-13 Score=106.82 Aligned_cols=108 Identities=25% Similarity=0.326 Sum_probs=78.7
Q ss_pred EEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC-CCCCCCceEEEEEeCC---
Q 017144 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFGHFGIAVED--- 193 (376)
Q Consensus 118 v~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~~~g~~hi~f~V~d--- 193 (376)
+.|.|+|++++++||+++|||++....+ .+ +.+..++ ...+.++....... .....+..|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TF--ALFVLGS---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ce--EEEEeCC---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 6799999999999999999999765321 12 2233322 23455655433221 1133567899999986
Q ss_pred HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 194 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 194 ~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
++++++++.++|+++..+|...+. ++.++|+|||||.||+.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 788899999999999888877654 35789999999999986
No 122
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.49 E-value=5.2e-13 Score=108.79 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=80.6
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC-
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD- 322 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~- 322 (376)
.+.|+.|.|.|++++.+||+++|||++.... +.+....+. + +..+.+... ....+..|++|.|+
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~------~~~~~~~h~a~~v~~ 68 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQP------DGEIPPQHYAFLVSE 68 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecC------CCCCCcceEEEEeCH
Confidence 5789999999999999999999999986421 122222222 1 234444332 11234579999886
Q ss_pred -CHHHHHHHHHHcCCeeecCCccC------CCCCceEEEEECCCCCeEEEEecc
Q 017144 323 -DVYKTAEAIKLSGGKITREPGPL------PGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 -Dl~~~~~~l~~~G~~~~~~p~~~------~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
|+++++++++++|+++..+|... ..+.++.+||+|||||.|||++.+
T Consensus 69 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 69 EEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 69999999999999998776543 122358999999999999999864
No 123
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.49 E-value=5.3e-13 Score=108.25 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=81.0
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC-
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD- 322 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~- 322 (376)
+++|++|.|+|++++.+||+++|||++.... ... ..++..++ .+..+.+... ..++..|++|.|+
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~---~~~--~~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRP---EDG--ALYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCC---CCC--eEEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 5889999999999999999999999986432 111 22333322 2344544321 1356789999996
Q ss_pred --CHHHHHHHHHHcCCeeecCCccC--CCCCceEEEEECCCCCeEEEEecc
Q 017144 323 --DVYKTAEAIKLSGGKITREPGPL--PGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 --Dl~~~~~~l~~~G~~~~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
|+++.+++|+++|+++...+.+. ..+..+++||+|||||.|||+...
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58999999999999998765322 222247899999999999998654
No 124
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.48 E-value=8.2e-13 Score=108.97 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=79.8
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCC--CeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEe
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDY--KYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 321 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V 321 (376)
.+.|+.|.|+|++++++||+++|||++......... .... ++..+ ...+.+..... ...++.+|++|.|
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~-~~~~~----~~~i~l~~~~~----~~~~~~~Hiaf~v 74 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEK-FFLIG----GLWIAIMEGDS----LQERTYNHIAFKI 74 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEeccccccccccee-EEEcC----CeEEEEecCCC----CCCCCceEEEEEc
Confidence 589999999999999999999999987543221100 0011 11111 23455542111 1234689999999
Q ss_pred C--CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 322 D--DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 322 ~--Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
+ |++++.++|+++|+++..+ .+...+.++.+||+|||||.|||....
T Consensus 75 ~~~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 75 SDSDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred CHHHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecCC
Confidence 8 7999999999999987643 222333358999999999999998654
No 125
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.48 E-value=7e-13 Score=108.08 Aligned_cols=113 Identities=24% Similarity=0.241 Sum_probs=77.9
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCC-----CCC--CCCCCceEE
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-----DKY--DIGTGFGHF 187 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~-----~~~--~~~~g~~hi 187 (376)
+.+|.|.|+|++++++||++ |||++......+. ..++..++ ...+.+...... .+. ..+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 46899999999999999987 8999864322111 22333332 234444432110 000 123345699
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 188 GIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 188 ~f~V~---d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
+|.|+ |+++++++++++|+++..+|...+ .++.+||+|||||.||++.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~--~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHG--FMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCC--ceEEEEEECCCCCEEEEEE
Confidence 99998 488899999999999988776655 3567899999999999974
No 126
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.2e-13 Score=112.41 Aligned_cols=123 Identities=31% Similarity=0.425 Sum_probs=81.1
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCC---------------CCceEEEEcccCCCccc-
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPE---------------DKNAVLELTYNHGVTEY- 308 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~l~l~~~~~~~~~- 308 (376)
+.|.++++.|+.++..||++++|+.+......++..+.+.++++... ..+..+||.+++|....
T Consensus 23 ~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes~~ 102 (170)
T KOG2944|consen 23 LQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTESPP 102 (170)
T ss_pred hhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCCCCc
Confidence 45666666666666666666666665543333332222333322100 12577899988877532
Q ss_pred ----cC----CCceeEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 309 ----DK----GNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 309 ----~~----g~g~~hiaf~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
.+ +.|.+||+|.|+|+++++++++++|+++...|. .|..-.++++.||||++||+....
T Consensus 103 ~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~--dGk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 103 DQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLK--DGKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred chhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCC--CccccceeEEECCCCCeEEEeecC
Confidence 22 248999999999999999999999999776543 222126899999999999998653
No 127
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.47 E-value=1.8e-12 Score=104.21 Aligned_cols=122 Identities=27% Similarity=0.325 Sum_probs=88.5
Q ss_pred ccceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEE
Q 017144 110 SDKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 189 (376)
Q Consensus 110 ~~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f 189 (376)
.+...+.|..|.|+|++++++||+++|||++.+..+..+. ..+.+..+.....=. +..... ...+.+...+.|
T Consensus 5 ~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~--~y~~f~~~~~~~gG~--l~~~~~---~~p~~~~~~iy~ 77 (127)
T COG3324 5 GEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEM--RYAVFPADGAGAGGG--LMARPG---SPPGGGGWVIYF 77 (127)
T ss_pred ccCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCc--eEEEEECCCccccce--eccCCc---CCCCCCCEEEEE
Confidence 3455799999999999999999999999999776543222 333332222111111 111111 112244556889
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecC
Q 017144 190 AVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 239 (376)
Q Consensus 190 ~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 239 (376)
.|+|+++..+|+.++|.+++.++.+.++ .++.+.+.||+||.|.|++..
T Consensus 78 ~v~did~~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 78 AVDDIDATLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred ecCChHHHHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 9999999999999999999999999885 688999999999999998753
No 128
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.47 E-value=1.1e-12 Score=104.28 Aligned_cols=109 Identities=27% Similarity=0.360 Sum_probs=79.7
Q ss_pred ccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHHHHH
Q 017144 249 MLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTA 328 (376)
Q Consensus 249 ~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~~ 328 (376)
.|.|.|++++.+||+++|||++..... ...+ .++..+ +..+.+....+.... ...+..|++|.|+|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 578999999999999999999876542 1222 334422 345555443322111 3456779999999999999
Q ss_pred HHHHHcCCe-eecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 329 EAIKLSGGK-ITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 329 ~~l~~~G~~-~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
++++++|++ +..++...+.+ .+.++++||+|+.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWG-MREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcc-cEEEEEECCCCCEEEecC
Confidence 999999999 56666555543 478999999999999976
No 129
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.47 E-value=1.5e-12 Score=105.10 Aligned_cols=112 Identities=20% Similarity=0.181 Sum_probs=78.7
Q ss_pred ccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCc-c---ccCCCceeEEEEEeC
Q 017144 247 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT-E---YDKGNGYAQIAIGTD 322 (376)
Q Consensus 247 ~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~-~---~~~g~g~~hiaf~V~ 322 (376)
+..|.|.|++++.+||+++|||++.... ..+. .+..++ ....+.+....... + ........|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~~--~~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWYV--SLRSPD--GGVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcEE--EEecCC--CceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 4578899999999999999999987431 1122 222211 12444443221110 0 111123359999999
Q ss_pred CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 323 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 323 Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
|+++++++++++|+++..+|...+.+ .+.++++||+|+.|||+|
T Consensus 76 did~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 99999999999999998888766654 588999999999999986
No 130
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.47 E-value=1.4e-12 Score=107.74 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=83.9
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCC
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD 323 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~D 323 (376)
+++|+.|.|.|++++.+||+++|||++....+. . ...++..+. .....+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecC-CCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 478999999999999999999999998654321 1 233444321 12345555443222111234578899999987
Q ss_pred HH---HHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecccc
Q 017144 324 VY---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 371 (376)
Q Consensus 324 l~---~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 371 (376)
++ +++++++++|+++..++ ..++ .+.+|++||+||.|||+.....
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~-~~~~--~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPV-DHGN--AWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccC-CCCc--eeEEEEECCCCCEEEEEEcCCC
Confidence 65 58899999999987654 2332 4789999999999999977643
No 131
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.46 E-value=1.9e-12 Score=104.93 Aligned_cols=108 Identities=21% Similarity=0.169 Sum_probs=76.3
Q ss_pred EEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHHH
Q 017144 117 HVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAK 196 (376)
Q Consensus 117 Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d~ 196 (376)
...|.|+|++++++||++ |||++..+.+. ..+++..+ ...+.+....... ......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~-----~~~~~~~~----~~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA-----GYMILRRG----DLELHFFAHPDLD---PATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC-----CEEEEEcC----CEEEEEEecCcCC---CCCCcceEEEEeCCHHH
Confidence 357899999999999999 99998754421 12334433 2355665533221 11223578999999999
Q ss_pred HHHHHHHcCCeee-------cCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 197 TVDLVKAKGGKVT-------REPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 197 ~~~rl~~~G~~i~-------~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
++++|+++|+++. .+|...+ .+.+.++|+|||||.|+|.|.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~-~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQP-WGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCC-CceeEEEEECCCCCEEEeecC
Confidence 9999999999743 2333333 367899999999999999874
No 132
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.46 E-value=8e-13 Score=107.25 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=76.0
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCC-----CCCCCCCCCceEEEE
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG-----VDKYDIGTGFGHFGI 189 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~-----~~~~~~~~g~~hi~f 189 (376)
|+||+|.|+|++++++||+. |||++...... ...+.+..+. ...+.+..... ........+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 99987543221 1122333321 12222222110 000012234567888
Q ss_pred EeC---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 190 AVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 190 ~V~---d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
.+. |+++++++|+++|+++..+|...+. +.+.++|+|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 775 7999999999999998887776665 457889999999999986
No 133
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=2.3e-13 Score=117.77 Aligned_cols=119 Identities=37% Similarity=0.700 Sum_probs=104.7
Q ss_pred CCCccccccccCChhHHHHHHHHhhCCEEeceecCCC-----------CCeEEEEeecCCCCCceEEEEcccCCCccccC
Q 017144 242 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-----------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYDK 310 (376)
Q Consensus 242 ~~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~ 310 (376)
..+.-|+.+.|.|.+++++||+++|||++.+-.+.++ +++.-.|+++|+++.|.++||+++++...|.-
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 3567899999999999999999999999998777665 78899999999999999999999999999999
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 311 GNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 311 g~g~~hiaf~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
|+++.|+.+.++|+.+.++.++..|.+- +..-++++.||||+.|+|+++.
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v~~p~~~~---------~g~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKVNAPGGKG---------SGCGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHhcCcCCcc---------cceEEEEEECCCCcEEEEeccC
Confidence 9999999999999999988888776521 1135789999999999999743
No 134
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.45 E-value=1.3e-12 Score=106.33 Aligned_cols=115 Identities=24% Similarity=0.330 Sum_probs=83.4
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCc-cccCCCceeEEEEEeC
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT-EYDKGNGYAQIAIGTD 322 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~-~~~~g~g~~hiaf~V~ 322 (376)
+++|+.|.|.|++++.+||+++|||++.... + . .+++..++ ....+.+....... ......+..|++|.|+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT---D-S--TAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLP 73 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C-C--EEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECC
Confidence 4789999999999999999999999997552 1 1 23344322 24556665433221 1233457889999997
Q ss_pred ---CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 323 ---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 ---Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
|+++++++++++|+++.. +..++. .+.+|++|||||+|||....
T Consensus 74 ~~~~v~~~~~~l~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 74 SRADLAAALRRLIELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred CHHHHHHHHHHHHHcCCceec-cccccc--eeEEEEECCCCCEEEEEEec
Confidence 589999999999998754 333433 47899999999999998654
No 135
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.45 E-value=2.2e-12 Score=103.01 Aligned_cols=108 Identities=20% Similarity=0.209 Sum_probs=78.6
Q ss_pred cccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHHHH
Q 017144 248 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKT 327 (376)
Q Consensus 248 v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~ 327 (376)
..|.|.|++++.+||+++|||+.... .. ...++..++ ..+..+.+..... .+....|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 45789999999999999999998532 11 122333222 2234444432211 123456999999999999
Q ss_pred HHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 328 AEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 328 ~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
+++++++|+++..+|...+++ .+.+|+.||+||.|+|+++
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPWG-VRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHhcCCeEecCCccCCCc-eEEEEEECCCCCEEEEEEc
Confidence 999999999998887766654 4789999999999999975
No 136
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.44 E-value=7.1e-13 Score=104.93 Aligned_cols=108 Identities=26% Similarity=0.365 Sum_probs=76.1
Q ss_pred cccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHHHHHH
Q 017144 250 LRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAE 329 (376)
Q Consensus 250 L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~~~ 329 (376)
|.|+|++++++||+++|||++....+ .+.....+. ........+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGF--RFHDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETE--EEEEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEecc--chhhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 57899999999999999999987322 233332221 00011222222111 12345688899999999999999
Q ss_pred HHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEE
Q 017144 330 AIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 366 (376)
Q Consensus 330 ~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 366 (376)
+++++|++++.+|...+++ .+.+++.|||||.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 9999999999888876664 58999999999999986
No 137
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.43 E-value=1.7e-12 Score=104.84 Aligned_cols=112 Identities=24% Similarity=0.349 Sum_probs=81.2
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEe--
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT-- 321 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V-- 321 (376)
.|+|+.|.|+|++++.+||+++|||+...... .+. ++..+. ...+.+.+.. ...++.+|++|.|
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~--~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~~ 68 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIV--YLRATG-SEHHILRLRR-------SDRNRLDVVSFSVAS 68 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEE--EEECCC-CccEEEEecc-------CCCCCCceEEEEeCC
Confidence 58999999999999999999999999864321 232 333222 1223333321 1224678999999
Q ss_pred -CCHHHHHHHHHHcCCeeecCCccCC-CCCceEEEEECCCCCeEEEEecc
Q 017144 322 -DDVYKTAEAIKLSGGKITREPGPLP-GINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 322 -~Dl~~~~~~l~~~G~~~~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
+|+++++++++++|+++..+|.... .+.++.++|+||+||.|||+...
T Consensus 69 ~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 69 RADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred HHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 5789999999999999987764332 22357899999999999998754
No 138
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.43 E-value=2e-12 Score=103.26 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=75.4
Q ss_pred ccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEe--CCH
Q 017144 247 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT--DDV 324 (376)
Q Consensus 247 ~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V--~Dl 324 (376)
|+.|.|+|++++.+||+++|||++....+ . . .++..+ ...+.+....... ..+.+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~--~--~~~~~~----~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K--E--AYFELA----GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c--e--eEEEec----CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 78999999999999999999999864431 1 1 112211 2344443322111 1235678999999 579
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 325 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 325 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
++++++++++|+++...+...+ ...+.+|++||||+.|||..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQ-GEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred HHHHHHHHHcCCccCCCccccC-CCceEEEEECCCCCEEEEEe
Confidence 9999999999999875432222 22578999999999999984
No 139
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.43 E-value=2.4e-12 Score=103.31 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=83.1
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC-
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD- 322 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~- 322 (376)
+++|+.|.|.|++++.+||+++|||++..... .. .++..+. ..+..+.+... ...+..|++|.|+
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~--~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~~ 67 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GS--VYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVAS 67 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC----Ce--EEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcCC
Confidence 57899999999999999999999999875431 12 2333321 12334444321 1256789999997
Q ss_pred --CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 323 --DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 --Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
|++++.++++++|+++...+...+++ .+.+|++||+||.+|++...
T Consensus 68 ~~~v~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 68 EEDLEALAAHLEAAGVAPEEASDPEPGV-GRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred HHHHHHHHHHHHHcCCceEEcCccCCCC-ceEEEEECCCCCEEEEEEcc
Confidence 68999999999999998877644543 47899999999999998654
No 140
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.43 E-value=3e-12 Score=103.77 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=75.4
Q ss_pred cccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHHHH
Q 017144 248 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKT 327 (376)
Q Consensus 248 v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~ 327 (376)
..|.|.|++++++||++ |||++....+. . +..+..+ +..+.|...... .......|++|.|+|++++
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHHH
Confidence 56889999999999999 99998654321 2 3334422 245555443211 1223346899999999999
Q ss_pred HHHHHHcCCeee-------cCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 328 AEAIKLSGGKIT-------REPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 328 ~~~l~~~G~~~~-------~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
+++|+++|+++. .++...+++ .+.++++|||||+|+|.|.
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQPWG-MREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCCCc-eeEEEEECCCCCEEEeecC
Confidence 999999999853 233333443 5889999999999999985
No 141
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.43 E-value=4e-12 Score=99.82 Aligned_cols=112 Identities=30% Similarity=0.420 Sum_probs=84.0
Q ss_pred ccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHHH
Q 017144 247 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYK 326 (376)
Q Consensus 247 ~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~ 326 (376)
|+.+.|.|++++.+||+++||++....... ......++..+ +..+.+....+......+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 788999999999999999999998766532 12344445532 456666654332211245678999999999999
Q ss_pred HHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEE
Q 017144 327 TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 365 (376)
Q Consensus 327 ~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 365 (376)
++++++++|+.+..++. ......+.+++.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPR-EEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCc-CCCCCcEEEEEECCCCcEEeC
Confidence 99999999999887765 222335899999999999986
No 142
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.42 E-value=2.5e-12 Score=103.98 Aligned_cols=114 Identities=24% Similarity=0.319 Sum_probs=79.0
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCc------cccCCCceeEEE
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT------EYDKGNGYAQIA 318 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~------~~~~g~g~~hia 318 (376)
+.++.|.|.|++++++||+++|||++... +++.+ .++..++. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~--~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRL--AFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCce--EEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 45789999999999999999999998753 22223 33443332 233332211110 111235778999
Q ss_pred EEe--CCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 319 IGT--DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 319 f~V--~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
|.| +|++++++++.++|+++...+. ... ..+.+|++||+|+.|||+++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~-~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPR-GGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCC-CeeEEEEECCCCCEEEEecC
Confidence 998 5899999999999999876553 222 25789999999999999864
No 143
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=5.3e-13 Score=108.68 Aligned_cols=118 Identities=31% Similarity=0.408 Sum_probs=70.5
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC-----CC----CCCCc
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-----YD----IGTGF 184 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-----~~----~~~g~ 184 (376)
++.|+.|.+++.-+..+||..+||+++.+....+..... +|+... +..+++..+.+... +. .+.|+
T Consensus 42 r~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~----~~~~ELthn~Gtes~~~~~~~ngN~~prGf 116 (170)
T KOG2944|consen 42 RVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSR----NAKLELTHNWGTESPPDQAYLNGNKEPRGF 116 (170)
T ss_pred hhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEecc----cCceeeecCCCCCCCcchhhcCCCCCCCcc
Confidence 344444444444444444444444443332222111111 333322 23566766544322 11 23599
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 185 GHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 185 ~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
+||||.|+|+++++.+|++.|++....|.+- -....+|+.||||++|||...
T Consensus 117 gHIci~V~di~sac~~lkekGV~f~Kk~~dG--k~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 117 GHICIEVDDINSACERLKEKGVRFKKKLKDG--KMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred ceEEEEeCCHHHHHHHHHHhCceeeecCCCc--cccceeEEECCCCCeEEEeec
Confidence 9999999999999999999999976554432 123688999999999999754
No 144
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.42 E-value=2.2e-12 Score=105.07 Aligned_cols=112 Identities=22% Similarity=0.213 Sum_probs=76.5
Q ss_pred cccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCC-----ccc--cCCCceeEEE
Q 017144 246 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV-----TEY--DKGNGYAQIA 318 (376)
Q Consensus 246 ~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~-----~~~--~~g~g~~hia 318 (376)
.++.|.|.|++++++||++ |||++......+. ......+ + ...+.+...... ... ..+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C---ceEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 4688999999999999976 8999864332222 2221121 1 234444321110 000 1234557999
Q ss_pred EEeC---CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 319 IGTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 319 f~V~---Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
|.|+ |+++++++++++|+++..+|...++ .+.+||+|||||.|||+-
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 9997 5889999999999999988776664 467899999999999973
No 145
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.41 E-value=2.5e-12 Score=102.54 Aligned_cols=95 Identities=27% Similarity=0.336 Sum_probs=77.0
Q ss_pred EEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCC--CCCCCceEEEEEeCC
Q 017144 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKY--DIGTGFGHFGIAVED 193 (376)
Q Consensus 116 ~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~--~~~~g~~hi~f~V~d 193 (376)
+||+|.|+|++++++||+++||++.......+.......++..++.. ..++|++....... ..+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999987776666666677777776532 67888886544321 267899999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 017144 194 VAKTVDLVKAKGGKVTREP 212 (376)
Q Consensus 194 ~d~~~~rl~~~G~~i~~~p 212 (376)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987653
No 146
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.41 E-value=4.8e-12 Score=102.79 Aligned_cols=114 Identities=24% Similarity=0.240 Sum_probs=79.1
Q ss_pred ccccccccCChhHHHHHHHHh---hCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEe
Q 017144 245 LCQVMLRVGDLDRAINFYKKA---FGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 321 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~---lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V 321 (376)
+.|+.|.|.|++++++||+++ ||+++.... .+ .. +.+..+. ....+.+....+... ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~--~~-~~~~~~~--~~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP--GA-VGYGKGG--GGPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC--ce-eEeccCC--CCceEEEeccccCCC-CCCCCceEEEEEC
Confidence 579999999999999999999 588875432 11 12 2233221 234455544322111 1223457999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCccCCC--CCceEEEEECCCCCeEEEE
Q 017144 322 DD---VYKTAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFV 366 (376)
Q Consensus 322 ~D---l~~~~~~l~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iel~ 366 (376)
+| ++++.++++++|+++..+|...+. ...+.+|++|||||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999999888766553 2235789999999999996
No 147
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.41 E-value=3.7e-12 Score=102.27 Aligned_cols=104 Identities=20% Similarity=0.241 Sum_probs=72.7
Q ss_pred EEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHHHH
Q 017144 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKT 197 (376)
Q Consensus 118 v~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d~~ 197 (376)
..|.|+|++++++||++ |||++..+.+ ..+++..+. ..+.+...... . ..+-.+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~----~~l~l~~~~~~-~---~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGN----CAFYLQDYYVK-D---WAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCC----EEEEeecCCCc-c---cccCCEEEEEECCHHHH
Confidence 45889999999999988 9999976542 235565542 23333322111 1 12234789999999999
Q ss_pred HHHHHHcCCeee-----cCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 198 VDLVKAKGGKVT-----REPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 198 ~~rl~~~G~~i~-----~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
+++|+++|+++. .+|...+ .+.+.++|+|||||.|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~-~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQP-WWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccC-CCcEEEEEECCCccEEEeeC
Confidence 999999998743 2333333 35789999999999999864
No 148
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.41 E-value=4e-12 Score=101.93 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=77.4
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCC
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD 323 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~D 323 (376)
++.|+.|.|+|++++.+||++ |||++..... + . .++..+.. ....+.+.. ...+++.|++|.|+|
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~--~--~~~~~~~~-~~~~~~~~~-------~~~~~~~~~af~v~~ 67 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D--E--LYYRGYGT-DPFVYVARK-------GEKARFVGAAFEAAS 67 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C--e--EEEecCCC-ccEEEEccc-------CCcCcccEEEEEECC
Confidence 578999999999999999999 9999865421 1 1 23332211 122222111 123578899999999
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 324 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 324 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
.++..+.++++|+++...+. .+.+ .+.+||+|||||.|||+-.
T Consensus 68 ~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 68 RADLEKAAALPGASVIDDLE-APGG-GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred HHHHHHHHHcCCCeeecCCC-CCCC-ceEEEEECCCCCEEEEEec
Confidence 99999999999998775432 3433 4789999999999999754
No 149
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.41 E-value=4e-12 Score=101.83 Aligned_cols=108 Identities=28% Similarity=0.344 Sum_probs=77.7
Q ss_pred cccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCcc-ccCCCceeEEEEEeCC---
Q 017144 248 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-YDKGNGYAQIAIGTDD--- 323 (376)
Q Consensus 248 v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~g~g~~hiaf~V~D--- 323 (376)
+.|.|.|++++++||+++||+++.... ..+...... + +..+.+........ .....+.+|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 568899999999999999999976432 123332221 1 23444443322211 1223467899999975
Q ss_pred HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEE
Q 017144 324 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 366 (376)
Q Consensus 324 l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 366 (376)
+++++++++++|+++..+|...+.+ +.++|+|||||.|||.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCc--cEEEEECCCCCEEEee
Confidence 8889999999999999888777664 6789999999999986
No 150
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.41 E-value=3.6e-12 Score=103.46 Aligned_cols=109 Identities=25% Similarity=0.345 Sum_probs=78.4
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEe--
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT-- 321 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V-- 321 (376)
++.|+.|.|+|++++.+||+++|||++....+ + . .++..+ ...+.+..... ....++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~--~--~~~~~~----~~~~~l~~~~~---~~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K--G--AYLEAG----DLWLCLSVDAN---VGPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C--c--eEEecC----CEEEEEecCCC---CCCCCCeeeEEEEeCH
Confidence 47899999999999999999999999864322 1 1 122222 22333322111 12346778999998
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 322 DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 322 ~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
+|+++++++++++|+++..++.. + .+.+||+|||||.|||+...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~-~---~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS-E---GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC-C---ccEEEEECCCCCEEEEEeCC
Confidence 58999999999999998755432 2 36899999999999998654
No 151
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.41 E-value=6.1e-12 Score=101.78 Aligned_cols=112 Identities=26% Similarity=0.331 Sum_probs=78.4
Q ss_pred cccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCC--
Q 017144 246 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD-- 323 (376)
Q Consensus 246 ~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~D-- 323 (376)
.|+.|.|+|++++.+||+++||++.....+ + +. .+... . ....+.+...... ..++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~--~--~~-~~~~~-~--~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD--D--YA-KFLLE-D--PRLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC--C--ee-EEEec-C--CceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 488999999999999999999998865421 1 22 22221 1 1233333321111 11578899999987
Q ss_pred -HHHHHHHHHHcCCeeecCCccCC-CCCceEEEEECCCCCeEEEEecc
Q 017144 324 -VYKTAEAIKLSGGKITREPGPLP-GINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 324 -l~~~~~~l~~~G~~~~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
+++.+++++++|+++..++.... ++..+.+|++||+||.|||+..-
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999887664332 22247899999999999998753
No 152
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.40 E-value=3.1e-12 Score=103.75 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=75.6
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCC-----CccccCCCceeEEEE
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG-----VTEYDKGNGYAQIAI 319 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~-----~~~~~~g~g~~hiaf 319 (376)
++|++|.|.|++++++||++ |||++...... ..+.. +..++ +..+.+..... ......+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~~~--~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPHVE--AVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCcEE--EEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57899999999999999975 99987533211 11111 22111 12232221100 000112335568888
Q ss_pred EeC---CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEE
Q 017144 320 GTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 366 (376)
Q Consensus 320 ~V~---Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 366 (376)
.+. |+++++++++++|+++..+|...+.+ .+.++++|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 764 89999999999999999888777664 47899999999999986
No 153
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.37 E-value=1.3e-11 Score=99.65 Aligned_cols=110 Identities=25% Similarity=0.321 Sum_probs=76.4
Q ss_pred EEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCC------CCCCCCCCCceEEEEEe
Q 017144 118 VVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG------VDKYDIGTGFGHFGIAV 191 (376)
Q Consensus 118 v~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~------~~~~~~~~g~~hi~f~V 191 (376)
|.|.|+|++++.+||+++|||++..+. .. ...++..+ ...+.+..... .+....+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 689999999999999999999986551 11 23455543 23455554211 11111222334566655
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 192 ---EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 192 ---~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
+|++++++++++.|+++..+|...++ +++.++++||+||.||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 57999999999999999877766554 5788999999999999864
No 154
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.36 E-value=6.5e-12 Score=102.04 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=73.2
Q ss_pred ccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccC-CC--ccc--cCCCceeEEE--E
Q 017144 247 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNH-GV--TEY--DKGNGYAQIA--I 319 (376)
Q Consensus 247 ~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~-~~--~~~--~~g~g~~hia--f 319 (376)
|+.|.|+|++++++||+++|||++..... .+ ..+..++ ....+.+.... .. ... ....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--ccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999854321 11 1122111 11222222111 00 000 1112445665 4
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCccCC---CCCceEEEEECCCCCeEEEEe
Q 017144 320 GTDDVYKTAEAIKLSGGKITREPGPLP---GINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 320 ~V~Dl~~~~~~l~~~G~~~~~~p~~~~---~~~~~~~~~~DPdG~~iel~~ 367 (376)
.++|+++++++|+++|+++..+|.... .+..+.+|++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 668999999999999999998775321 122488999999999999974
No 155
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.34 E-value=1.8e-11 Score=97.93 Aligned_cols=107 Identities=22% Similarity=0.224 Sum_probs=73.2
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeE--EEEEe
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQ--IAIGT 321 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~h--iaf~V 321 (376)
.|+|+.|.|.|++++.+||+ .|||++.... + . ..+...+. .+..+.+... ...+..| +++.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~--~-~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D--G-LELRTAGN--DHRWARLLEG-------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C--c-eEEEecCC--CceEEEeecC-------CCCceeeEEEEeEh
Confidence 58999999999999999997 6999986432 1 1 12222111 2333333321 1223444 45556
Q ss_pred CCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 322 DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 322 ~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
+|+++++++++++|+++..++. +.+ .+.+||+||+||.|||....
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~~--~~~-~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAPP--GAD-PDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhHHHHHHHHHHcCCceecCCC--cCC-CCEEEEECCCCCEEEEecCC
Confidence 8999999999999999886652 221 35789999999999998543
No 156
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.31 E-value=4.4e-11 Score=96.42 Aligned_cols=111 Identities=23% Similarity=0.218 Sum_probs=75.8
Q ss_pred cccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCC------CccccCCCceeEEEEEe
Q 017144 248 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG------VTEYDKGNGYAQIAIGT 321 (376)
Q Consensus 248 v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~------~~~~~~g~g~~hiaf~V 321 (376)
|.|.|.|++++.+||+++|||++.... +..+ .++..+ +..+.+..... ......+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDGV--AFFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCce--EEEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 578899999999999999999986541 1122 233321 34455543211 00111222334566654
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 322 ---DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 322 ---~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
+|++++++++++.|+++..++...+.+ .+.++++||+||+|||..+
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~~ 121 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAHN 121 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEeeC
Confidence 689999999999999998877666543 5889999999999999753
No 157
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.31 E-value=7.5e-12 Score=99.81 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=76.6
Q ss_pred cccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCcc--ccCCCceeEEEEEeCC
Q 017144 246 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE--YDKGNGYAQIAIGTDD 323 (376)
Q Consensus 246 ~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~--~~~g~g~~hiaf~V~D 323 (376)
+|+.+.|+|++++++||+++||++.......+.....+.++..++. ...+||.++.+... ...+.|++|++|.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 5899999999999999999999998776666666677777775442 26888887655432 2478899999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 017144 324 VYKTAEAIKLSGGKITREP 342 (376)
Q Consensus 324 l~~~~~~l~~~G~~~~~~p 342 (376)
++++.++|+++|++++..+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999988653
No 158
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.30 E-value=5.4e-11 Score=95.46 Aligned_cols=104 Identities=20% Similarity=0.156 Sum_probs=71.5
Q ss_pred cccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCCHHHH
Q 017144 248 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKT 327 (376)
Q Consensus 248 v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~ 327 (376)
..|.|.|++++++||++ |||++.... ..+ .++..+ ...+.+...... ...+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~~--~~l~~~----~~~l~l~~~~~~----~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----DNL--AYFRLG----NCAFYLQDYYVK----DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----CCE--EEEEcC----CEEEEeecCCCc----ccccCCEEEEEECCHHHH
Confidence 45789999999999987 999997543 123 334432 233334321111 112345789999999999
Q ss_pred HHHHHHcCCeeec-----CCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 328 AEAIKLSGGKITR-----EPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 328 ~~~l~~~G~~~~~-----~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
+++|+++|+++.+ ++...+.+ .+.++|+|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g-~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWW-GREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCC-cEEEEEECCCccEEEeeC
Confidence 9999999987543 33333333 589999999999999864
No 159
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.16 E-value=3.3e-10 Score=99.60 Aligned_cols=99 Identities=25% Similarity=0.386 Sum_probs=73.4
Q ss_pred eeeEEEEEEeC--ChhHHHHHHHHhcCCEEEEEeecCC--CceEEEEEeeCCCCceEEEEEEecCCC--C-------CCC
Q 017144 113 RRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPE--DRYTNAFLGYGPEDSHFVVELTYNYGV--D-------KYD 179 (376)
Q Consensus 113 ~~i~Hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~l~l~~~~~~--~-------~~~ 179 (376)
.+|+||++.|+ |++++++||+++|||+.......++ .......+.... ....+++...... . ...
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHh
Confidence 47999999999 9999999999999999887665433 223334444332 2556677654331 1 112
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHHcCCeeecCCe
Q 017144 180 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPG 213 (376)
Q Consensus 180 ~~~g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~ 213 (376)
.+.|+.||||.|+|+++++++|+++|+++...|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 4689999999999999999999999999876654
No 160
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.08 E-value=1.8e-09 Score=83.27 Aligned_cols=116 Identities=28% Similarity=0.362 Sum_probs=80.4
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC---CC-CCCCceEE--
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YD-IGTGFGHF-- 187 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~---~~-~~~g~~hi-- 187 (376)
-+-|.+|.|+|++++++||.++||++.-... ..|+.++-.++.+.+.+........ .. ++--..|+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRst--------d~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRST--------DTWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhccccccccc--------ceEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 4679999999999999999999999864333 2455544444556666655432221 11 11223454
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCeecC-C--CCeEEEEEEcCCCCEEEEee
Q 017144 188 GIAVEDVAKTVDLVKAKGGKVTREPGPVK-G--GNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 188 ~f~V~d~d~~~~rl~~~G~~i~~~p~~~~-~--~~~~~~~~~DPdG~~iel~~ 237 (376)
.+.++|.-++.+||+++|+....+|.-.- + +..+.+++.||.||.+|+-.
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~ 128 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKG 128 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeec
Confidence 46778888999999999998877664432 2 45677889999999999853
No 161
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.05 E-value=9.3e-10 Score=96.73 Aligned_cols=98 Identities=26% Similarity=0.385 Sum_probs=74.4
Q ss_pred CccccccccC--ChhHHHHHHHHhhCCEEeceecCCC--CCeEEEEeecCCCCCceEEEEcccCCC--c-------cccC
Q 017144 244 PLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPD--YKYTIAVMGYGPEDKNAVLELTYNHGV--T-------EYDK 310 (376)
Q Consensus 244 ~~~~v~L~v~--D~~~a~~FY~~~lG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~l~l~~~~~~--~-------~~~~ 310 (376)
.++|+++.|+ |++++++||+++|||+.......++ .......+..+ .....++|..+... . ....
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 5899999999 9999999999999999887654333 23444444432 23567777654431 1 1235
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHcCCeeecCCc
Q 017144 311 GNGYAQIAIGTDDVYKTAEAIKLSGGKITREPG 343 (376)
Q Consensus 311 g~g~~hiaf~V~Dl~~~~~~l~~~G~~~~~~p~ 343 (376)
|+|++|+||.|+|+++++++|+++|++++..|.
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 789999999999999999999999999998773
No 162
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.90 E-value=8.5e-09 Score=99.45 Aligned_cols=101 Identities=19% Similarity=0.335 Sum_probs=72.3
Q ss_pred ccceeeEEEEEEeC--ChhHHHHHHHHhcCCEEEEEeecCCC--ceEEEEEeeCCCCceEEEEEEecCCC--C-------
Q 017144 110 SDKRRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPED--RYTNAFLGYGPEDSHFVVELTYNYGV--D------- 176 (376)
Q Consensus 110 ~~~~~i~Hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~l~l~~~~~~--~------- 176 (376)
+...+|+||++.|+ |++++++||+++|||++....+.... ......+.... ....+++...... .
T Consensus 154 ~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~--g~~~i~L~ep~~~~~~s~i~~fl 231 (353)
T TIGR01263 154 VGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPD--GKVKIPLNEPASGKDKSQIEEFL 231 (353)
T ss_pred CCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCC--CcEEEEEeccCCCCCCCHHHHHH
Confidence 34678999999999 99999999999999998876553321 11112232211 2456777653111 1
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHcCCeeecCC
Q 017144 177 KYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREP 212 (376)
Q Consensus 177 ~~~~~~g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p 212 (376)
....+.|+.||||.|+|+++++++|+++|+++..+|
T Consensus 232 ~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 232 EFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 122478999999999999999999999999987665
No 163
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.90 E-value=5.1e-09 Score=84.71 Aligned_cols=121 Identities=26% Similarity=0.417 Sum_probs=73.2
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCce---EEEEEeeCCCCceEEEEE--------EecCCCC-CCCCC
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRY---TNAFLGYGPEDSHFVVEL--------TYNYGVD-KYDIG 181 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~---~~~~l~~g~~~~~~~l~l--------~~~~~~~-~~~~~ 181 (376)
+++||.|.|+|++++++||+++||+++..+........ ...+.............. ....... .....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 68999999999999999999999999987664332211 112221110000000000 0000000 00111
Q ss_pred -CCceEEEEEeCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEee
Q 017144 182 -TGFGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 237 (376)
Q Consensus 182 -~g~~hi~f~V~d---~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 237 (376)
.+..|+++.+++ ...........|..+...+. ..+ +..+|++||||+.+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 347799999998 55666677777888755433 222 238999999999999863
No 164
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.87 E-value=1.1e-07 Score=74.44 Aligned_cols=113 Identities=25% Similarity=0.340 Sum_probs=71.3
Q ss_pred EEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHH
Q 017144 116 LHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVA 195 (376)
Q Consensus 116 ~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d 195 (376)
.+-+|+|+|-+..++||++.|||++..+.. ..++++.......+.++-.+............++++.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 467899999999999999999999988775 46777765555566777666554444445568999999999977
Q ss_pred HHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 196 KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 196 ~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
++ +.|.++|.++. .-..+.+++.+-..+|+|..|.+...
T Consensus 76 EI-e~LLar~~~~~---~l~kg~~gyAfe~vSPEgd~~llhaE 114 (125)
T PF14506_consen 76 EI-EALLARGAQYD---RLYKGKNGYAFEAVSPEGDRFLLHAE 114 (125)
T ss_dssp HH-HHHHHC-S--S---EEEE-SSSEEEEEE-TT--EEEEE--
T ss_pred HH-HHHHhcccccc---eeEEcCCceEEEEECCCCCEEEEEEc
Confidence 74 34556665542 33445577888889999999998743
No 165
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.87 E-value=1.3e-07 Score=77.56 Aligned_cols=112 Identities=11% Similarity=0.126 Sum_probs=73.2
Q ss_pred EEEEe-CChhHHHHHHHHhcCCEEEEEeecC----------CCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceE
Q 017144 118 VVYRV-GDLDKTIKFYTECLGMKLLRKRDIP----------EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGH 186 (376)
Q Consensus 118 v~l~v-~Dl~~a~~FY~~vLG~~~~~~~~~~----------~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~h 186 (376)
..|.+ .|.+++++||+++||+++......+ ++....+.+..++. .+.+......... .+..-.+
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~----~l~~~d~~~~~~~-~~~~~~~ 77 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQ----RLMASDGGPGFPF-TFGNGIS 77 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCE----EEEEEcCCCCCCC-CCCCCEE
Confidence 34677 8999999999999999998765321 12223444444431 3333332111111 1223446
Q ss_pred EEEEeCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 187 FGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 187 i~f~V~d---~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
+++.|+| +++++++|.+.| ++..+|.+.++ +.+..+++||+|+.|+|.
T Consensus 78 l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 78 LSVECDSEEEADRLFEALSEGG-TVLMPLQKTFW-SPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEEECCCHHHHHHHHHHHhcCC-eEeccchhcCc-ccccEEEECCCCCEEEeC
Confidence 8899887 667788876655 88777777765 567889999999999873
No 166
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.83 E-value=9.6e-08 Score=78.29 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=72.0
Q ss_pred ccc-CChhHHHHHHHHhhCCEEeceecC----------CCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEE
Q 017144 250 LRV-GDLDRAINFYKKAFGMELLRKRDN----------PDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIA 318 (376)
Q Consensus 250 L~v-~D~~~a~~FY~~~lG~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hia 318 (376)
|.+ .|.+++++||+++||+++...... ..+.+....+..+ +..+.+......... .+....+++
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~l~ 79 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGISLS 79 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEEEE
Confidence 556 899999999999999999865531 1122233333322 233333322111111 123345788
Q ss_pred EEeCC---HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEE
Q 017144 319 IGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 366 (376)
Q Consensus 319 f~V~D---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 366 (376)
+.|+| +++++++|++.| +++.++...+.+ .+..+++||+|+.|+|.
T Consensus 80 i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 80 VECDSEEEADRLFEALSEGG-TVLMPLQKTFWS-PLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EECCCHHHHHHHHHHHhcCC-eEeccchhcCcc-cccEEEECCCCCEEEeC
Confidence 98886 677889987665 888888877765 58899999999999973
No 167
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.83 E-value=2.8e-07 Score=75.53 Aligned_cols=117 Identities=20% Similarity=0.201 Sum_probs=84.3
Q ss_pred EEEeC-ChhHHHHHHHHhcCCEEEEEeecCC----------CceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCC-ceE
Q 017144 119 VYRVG-DLDKTIKFYTECLGMKLLRKRDIPE----------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG-FGH 186 (376)
Q Consensus 119 ~l~v~-Dl~~a~~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g-~~h 186 (376)
.|..+ |.+++++||+++||.++..+...++ +..-.+-+.+++. .+.+...........+.+ -.-
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~----~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGS----TIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCE----EEEEecCCCccCcccCCCeeEE
Confidence 46778 9999999999999999998887766 4445555665532 232222211111112222 234
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCC
Q 017144 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (376)
Q Consensus 187 i~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 240 (376)
|.+.++|++++++++.+.|+++..++.+..+ +.+...++||.|+.|.|.....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fw-G~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFW-GDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCc-ccceEEEECCCCCEEEEecCcc
Confidence 6788889999999999999999998888877 5677889999999999986543
No 168
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.82 E-value=4.6e-08 Score=84.78 Aligned_cols=147 Identities=22% Similarity=0.305 Sum_probs=84.6
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCC--C----CC------CCCC
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV--D----KY------DIGT 182 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~--~----~~------~~~~ 182 (376)
|+|+++.|+|++++.++|++.|||.+.....++.....+..+.+++ . +||+..-.+. . .. ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCcccccccccceechhhcCCC
Confidence 6899999999999999998889999998888777555666666654 2 7787763211 1 10 1467
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeecCCeecCCCC--eEEEEEEcC----CCCEEEEeecCC-C---------CCCcc
Q 017144 183 GFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGN--TVIAFIEDP----DGYKFELLERGP-T---------PEPLC 246 (376)
Q Consensus 183 g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~--~~~~~~~DP----dG~~iel~~~~~-~---------~~~~~ 246 (376)
|+.++|+.++|+++..+++++.|+... .+....+.. -+.+++.++ .+..-.+++... . ...|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~-~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAG-SRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEE-EEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCC-CcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 899999999999999999999997621 112222111 123344553 234445553222 1 13589
Q ss_pred ccccccCChhHHHHHHHHhh
Q 017144 247 QVMLRVGDLDRAINFYKKAF 266 (376)
Q Consensus 247 ~v~L~v~D~~~a~~FY~~~l 266 (376)
++.+.++|++++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 169
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.82 E-value=4e-08 Score=77.28 Aligned_cols=117 Identities=24% Similarity=0.297 Sum_probs=76.6
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCC-------CCCCceE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYD-------IGTGFGH 186 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~-------~~~g~~h 186 (376)
++..|.|.|.|++++.+||+. |||+......... ....+-.+ .+.+.|.....-..+. ..+.-.-
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~~----ni~vMLL~~~~fq~F~~~~i~dt~~s~evl 74 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIISD----NIFVMLLEEARFQTFTKRQIADTTKSREVL 74 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEec----cEEEEEeccHHhhhhcccccccccCCceEE
Confidence 577899999999999999988 9999865432211 22222222 2233333321111000 1122334
Q ss_pred EEEEeCC---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCC
Q 017144 187 FGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 240 (376)
Q Consensus 187 i~f~V~d---~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 240 (376)
+++.+.+ +|++.++..++|+++..+|.+.. ..+..-|.||||+.||++.-.+
T Consensus 75 i~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~g--fMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 75 ISLSAGSREEVDELVDKALEAGGKPANEPQDEG--FMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EEeccCcHHHHHHHHHHHHHcCCCCCCCccccc--cccceeeeCCCCCeEEEEEeCH
Confidence 7788775 88899999999999977776654 5677779999999999986543
No 170
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.77 E-value=2.9e-07 Score=75.42 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=82.8
Q ss_pred cccC-ChhHHHHHHHHhhCCEEeceecCCC----------CCeEEEEeecCCCCCceEEEEcccCCCccccCCC-ceeEE
Q 017144 250 LRVG-DLDRAINFYKKAFGMELLRKRDNPD----------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGN-GYAQI 317 (376)
Q Consensus 250 L~v~-D~~~a~~FY~~~lG~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~-g~~hi 317 (376)
|... |.++|++||+++||.+...+....+ +....+-+..+ +..+.+....+......++ --.-+
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~l 81 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLSL 81 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEEE
Confidence 4566 9999999999999999987776555 34444444432 2333333222221122222 33567
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 318 AIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 318 af~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
.+.++|+++..+++.+.|+++..++.+...+ .++..++||.|+.|.|....
T Consensus 82 ~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 82 DLYVEDVDAVFERAAAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEehHHHHHHHHHHhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCc
Confidence 8888899999999999999999999888776 58999999999999997765
No 171
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.70 E-value=1.3e-07 Score=72.99 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=75.5
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCc---cc-cCC--CceeEEE
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT---EY-DKG--NGYAQIA 318 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~---~~-~~g--~g~~hia 318 (376)
+-|+.+.|.|++++++||.++||.+.-++.+. ....-+++. +.++-+....+.. .. ..+ ...--+.
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~---wvdfDfyGH-----Q~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvV 76 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTDT---WVDFDFYGH-----QVVAHLTPQPDSQGSGKVDGHGVPPPHFGVV 76 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccce---EEEeeeccc-----EEEEEecCCcccccCcccCCCCCCCccceEE
Confidence 45888999999999999999999998665321 112222221 2222222211110 01 111 1223456
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCccC---CCCCceEEEEECCCCCeEEEEecc
Q 017144 319 IGTDDVYKTAEAIKLSGGKITREPGPL---PGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 319 f~V~Dl~~~~~~l~~~G~~~~~~p~~~---~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
+.++|..+..++|+++|+.+..+|.-. ..+.++..++.||.||.+|+-.--
T Consensus 77 l~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR 130 (138)
T COG3565 77 LPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFR 130 (138)
T ss_pred EEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeeccc
Confidence 678999999999999999988777522 123358899999999999996544
No 172
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.65 E-value=6.7e-08 Score=78.00 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=74.2
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCC---eEEEEeecCCC--CCceEE------EEcccCCCc-cccCC
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYK---YTIAVMGYGPE--DKNAVL------ELTYNHGVT-EYDKG 311 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~---~~~~~l~~~~~--~~~~~l------~l~~~~~~~-~~~~g 311 (376)
.+.|+.|.|+|++++.+||+++||+++.......... ....+...... ...... ......... ....+
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 4789999999999999999999999998765433221 11111111100 000000 000000000 01111
Q ss_pred -CceeEEEEEeCC---HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 312 -NGYAQIAIGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 312 -~g~~hiaf~V~D---l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
.+..|+++.+++ ...........|..+..... ...+ ..+|++||||+.||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~--~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGG--VHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcc--eEEEEECCCCcEEEeeC
Confidence 347899999998 67777888888888765443 2222 38999999999999974
No 173
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.63 E-value=3.7e-07 Score=71.88 Aligned_cols=113 Identities=21% Similarity=0.230 Sum_probs=74.1
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccC---C----CccccCCCceeEE
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNH---G----VTEYDKGNGYAQI 317 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~---~----~~~~~~g~g~~hi 317 (376)
..+|.|.|.|++++.+||+ .|||+..+...+... ...... ....+.|..+. . .........-..+
T Consensus 4 mIFvNLPVkDL~~S~~Fy~-alGfk~Npq~sde~a--~~mi~~-----~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 4 MIFVNLPVKDLEASKAFYT-ALGFKFNPQFSDEDA--ACMIIS-----DNIFVMLLEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred EEEEecchhhHHHHHHHHH-HhCcccCCCcccccc--eeEEEe-----ccEEEEEeccHHhhhhcccccccccCCceEEE
Confidence 3468899999999999995 599998765543322 111111 12233332211 0 0011233444678
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 318 AIGTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 318 af~V~---Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
++.+. ++++.+++..++|++...++.++.. -+..-|.|||||.||++-
T Consensus 76 ~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 76 SLSAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred EeccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEE
Confidence 88885 6899999999999999777766554 355689999999999963
No 174
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.63 E-value=1.7e-07 Score=90.34 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=72.5
Q ss_pred ceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCC-----ceEEEEEeeCCCCceEEEEEEecCCC--C--------
Q 017144 112 KRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPED-----RYTNAFLGYGPEDSHFVVELTYNYGV--D-------- 176 (376)
Q Consensus 112 ~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~-----~~~~~~l~~g~~~~~~~l~l~~~~~~--~-------- 176 (376)
..+|+||++.|++++.+..||+++|||+.....+.++. ......+..+.. ...++|..+... .
T Consensus 178 l~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g--~v~ipLnEP~~~~~~~SqI~eFL 255 (398)
T PLN02875 178 LRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNE--MVLLPLNEPTFGTKRKSQIQTYL 255 (398)
T ss_pred cceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCC--cEEEEeccCCCCCCCcChHHHHH
Confidence 56899999999999999999999999998765443221 123444544332 456666664321 1
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHc----CCeeecCC
Q 017144 177 KYDIGTGFGHFGIAVEDVAKTVDLVKAK----GGKVTREP 212 (376)
Q Consensus 177 ~~~~~~g~~hi~f~V~d~d~~~~rl~~~----G~~i~~~p 212 (376)
....|.|++||||.++|+.++.++|+++ |++....|
T Consensus 256 ~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 256 EHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 1224689999999999999999999998 99887643
No 175
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.47 E-value=1e-06 Score=82.31 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=70.8
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeC
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVE 192 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~ 192 (376)
-+.-||.|.|.|++++++||+++||+.. . .++ ..+.+ + + .+..-+....+. ....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-F----sde--~a~cm--~-d--tI~vMllt~~D~----~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-W----DGD--KLFLL--G-K--TSLYLQQTKAEK----KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-C----CCC--ccccc--c-C--cEEEEEecCCCC----CCcceEEEEeccC
Confidence 3688999999999999999999988863 2 111 11212 2 2 222222222211 1123345788888
Q ss_pred C---HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 193 D---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 193 d---~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
+ +|++.++..++|++...+|.+++. .--|.||||+.||++..
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEEE
Confidence 6 888899999999987667776654 33489999999999854
No 176
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.27 E-value=1.1e-06 Score=79.84 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=88.0
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccC--CCc-----cccCCCcee
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNH--GVT-----EYDKGNGYA 315 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~--~~~-----~~~~g~g~~ 315 (376)
.+++|+.+.|+|...++.||+..|||++......+.+...+....... +..+..+...+ +.+ ...+|.+..
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~--g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQ--GKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhc--CCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 358999999999999999999999999987653332211111111111 11222222211 111 124677888
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCccCCC--CCceEEEEECCCCCeEEEEeccccccc
Q 017144 316 QIAIGTDDVYKTAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFVDNLDFLKE 374 (376)
Q Consensus 316 hiaf~V~Dl~~~~~~l~~~G~~~~~~p~~~~~--~~~~~~~~~DPdG~~iel~~~~~~~~~ 374 (376)
-+||+|+|.+++.+.+.++|.++..+|..... |..+++.+..+.-...-|+++..++.+
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~ 154 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGP 154 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccccc
Confidence 99999999999999999999999998875432 334778888887777777777665554
No 177
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.15 E-value=1.2e-05 Score=75.22 Aligned_cols=105 Identities=25% Similarity=0.366 Sum_probs=71.4
Q ss_pred CCccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 322 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~ 322 (376)
....||.|.|.|++++.+||+++|++.. ..++. . . .++ +....+-+.+. -.....-.-+++.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~---Fsde~--a-~-cm~----dtI~vMllt~~-----D~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC---WDGDK--L-F-LLG----KTSLYLQQTKA-----EKKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC---CCCCc--c-c-ccc----CcEEEEEecCC-----CCCCcceEEEEeccC
Confidence 4567999999999999999999988874 11111 1 1 111 11222323322 112234456888886
Q ss_pred ---CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEe
Q 017144 323 ---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 367 (376)
Q Consensus 323 ---Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 367 (376)
++|+.+++..++|++...++.++.. .--|.|||||.||++-
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSC 353 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEE
Confidence 5889999999999987666666554 3479999999999974
No 178
>PRK10148 hypothetical protein; Provisional
Probab=98.07 E-value=0.00033 Score=58.80 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=73.8
Q ss_pred EEEEeC-ChhHHHHHHHHhcCCEEEEEeec--------------------CCCceEEEEEeeCCCCceEEEEEEecCCCC
Q 017144 118 VVYRVG-DLDKTIKFYTECLGMKLLRKRDI--------------------PEDRYTNAFLGYGPEDSHFVVELTYNYGVD 176 (376)
Q Consensus 118 v~l~v~-Dl~~a~~FY~~vLG~~~~~~~~~--------------------~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~ 176 (376)
..|..+ |.+++.+||+++||.++...... +++....+-+.+++. .+.+... ..
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~----~lm~sD~--~~ 78 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS----DIMMSDA--IP 78 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE----EEEEECC--CC
Confidence 345664 89999999999999988654321 112333455555431 2222221 11
Q ss_pred CCCCCCCceEEEEEeCCHHH---HHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCC
Q 017144 177 KYDIGTGFGHFGIAVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 241 (376)
Q Consensus 177 ~~~~~~g~~hi~f~V~d~d~---~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 241 (376)
.......-.++++.++|.++ ++++| +.|+++..++.+..+ +.+...++||.|+.|.|......
T Consensus 79 ~~~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~~~~ 144 (147)
T PRK10148 79 SGKAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVVKQQ 144 (147)
T ss_pred CcCCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcch-hhccEEEECCCCCEEEEEecCCC
Confidence 11111123467788888776 45555 689999888888776 56778899999999999876543
No 179
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.97 E-value=1.9e-05 Score=73.36 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=70.3
Q ss_pred eeeEEEEEEeC--ChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEe-eCCCCceEEEEEEecCCCCC-------CCCCC
Q 017144 113 RRMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLG-YGPEDSHFVVELTYNYGVDK-------YDIGT 182 (376)
Q Consensus 113 ~~i~Hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~-~g~~~~~~~l~l~~~~~~~~-------~~~~~ 182 (376)
..|+|++..|. .++....||+++|||+.....+.++.. +.++-+ .-+....+.+.+.......+ .-.|.
T Consensus 166 ~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~-tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~ 244 (363)
T COG3185 166 TAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPI-TGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGE 244 (363)
T ss_pred eeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCc-ccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCC
Confidence 58999999885 799999999999999998877665532 111111 11111234454444332222 11678
Q ss_pred CceEEEEEeCCHHHHHHHHHHcCCeeecCCe
Q 017144 183 GFGHFGIAVEDVAKTVDLVKAKGGKVTREPG 213 (376)
Q Consensus 183 g~~hi~f~V~d~d~~~~rl~~~G~~i~~~p~ 213 (376)
|+.||+|.++|+-++.++++++|++....|.
T Consensus 245 GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 245 GIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred cceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 9999999999999999999999999876553
No 180
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.95 E-value=8.7e-05 Score=61.18 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=77.9
Q ss_pred cceeeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCC----CCCCCCceE
Q 017144 111 DKRRMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK----YDIGTGFGH 186 (376)
Q Consensus 111 ~~~~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~----~~~~~g~~h 186 (376)
...++.||.+.++|.++...+++ .|||+.+.+-.. .....++.|. ..+.++- .+.... ..+|+++.-
T Consensus 6 g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrs----k~v~l~rQG~--I~~vln~--ep~s~a~~~~~~HG~sv~a 76 (139)
T PF14696_consen 6 GLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRS----KDVTLYRQGD--INFVLNS--EPDSFAAEFAAQHGPSVCA 76 (139)
T ss_dssp -EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECC----CSEEEEEETT--EEEEEEE--ESTSCHHHHHHHHSSEEEE
T ss_pred CCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCC----cceEEEEeCC--EEEEEeC--CCcchHHHHHHhcCCEEEE
Confidence 34689999999999888888886 499998765321 1233444442 2444433 222211 126889999
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCCC
Q 017144 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 242 (376)
Q Consensus 187 i~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 242 (376)
++|.|+|.++++++..++|.+....|... +.-...-++.++|..+.|++.....
T Consensus 77 iafrV~Da~~A~~rA~~~GA~~~~~~~~~--~e~~~paI~g~G~sl~yfVdr~~~~ 130 (139)
T PF14696_consen 77 IAFRVDDAAAAYERAVALGAEPVQEPTGP--GELNIPAIRGIGGSLHYFVDRYGDK 130 (139)
T ss_dssp EEEEES-HHHHHHHHHHTT--EEEEEEET--T-BEEEEEE-CCC-EEEEEE--SSS
T ss_pred EEEEeCCHHHHHHHHHHcCCcCcccCCCC--CcEeeeeEEccCCCEEEEEecCCCC
Confidence 99999999999999999999887655332 3455667899999999999876543
No 181
>PRK10148 hypothetical protein; Provisional
Probab=97.80 E-value=0.0006 Score=57.19 Aligned_cols=111 Identities=19% Similarity=0.137 Sum_probs=69.9
Q ss_pred ccc-CChhHHHHHHHHhhCCEEeceec---C-----------------CCCCeEEEEeecCCCCCceEEEEcccCCCccc
Q 017144 250 LRV-GDLDRAINFYKKAFGMELLRKRD---N-----------------PDYKYTIAVMGYGPEDKNAVLELTYNHGVTEY 308 (376)
Q Consensus 250 L~v-~D~~~a~~FY~~~lG~~~~~~~~---~-----------------~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~ 308 (376)
|.. .+.++|++||+++||-++..... . +++.+....+..+ +..+.+...... ..
T Consensus 7 L~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~~~-~~ 81 (147)
T PRK10148 7 LSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAIPS-GK 81 (147)
T ss_pred EEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCCCC-cC
Confidence 445 48999999999999988764421 1 1122333333332 122322211111 01
Q ss_pred cCCCceeEEEEEeCCHHH---HHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 309 DKGNGYAQIAIGTDDVYK---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 309 ~~g~g~~hiaf~V~Dl~~---~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
..+. -.++.+.++|.++ +.++| +.|++++.++...+.+ .++..++||-|+.|.|...
T Consensus 82 ~~~~-~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg-~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 82 AHYS-GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWA-HGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred CCCC-eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchh-hccEEEECCCCCEEEEEec
Confidence 1122 3477888888776 55666 5889999998887765 4889999999999999764
No 182
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=97.71 E-value=0.00044 Score=54.49 Aligned_cols=112 Identities=25% Similarity=0.369 Sum_probs=61.9
Q ss_pred ccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCc--cccCCCceeEEEEEeCCH
Q 017144 247 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT--EYDKGNGYAQIAIGTDDV 324 (376)
Q Consensus 247 ~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~--~~~~g~g~~hiaf~V~Dl 324 (376)
+-.|+|.|-+..++||++.|||++..+. -.+++++.. .+...+.|-+.++.. ...+..-++++.+.|++.
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EE------na~a~lg~~--~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~ 74 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEE------NALAILGDQ--QKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNP 74 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEE------TTEEEEE-T--T--EEEEEEE--TTT-B--SSS-SEEEEEEEESSH
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeecc------ccEEEecCC--CCceEEEEecCCccccccccCcceeeEEEEEcCCH
Confidence 4568999999999999999999998653 134556643 334444444433221 223345788999999884
Q ss_pred HHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 325 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 325 ~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
..++.|.++|.++..- .-+-+++.+-..+|.|..|.|....+
T Consensus 75 -~EIe~LLar~~~~~~l---~kg~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 75 -KEIEALLARGAQYDRL---YKGKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp -HHHHHHHHC-S--SEE---EE-SSSEEEEEE-TT--EEEEE--S-
T ss_pred -HHHHHHHhccccccee---EEcCCceEEEEECCCCCEEEEEEcCC
Confidence 4456666677653221 11223466778899999999987664
No 183
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.39 E-value=0.00034 Score=60.49 Aligned_cols=87 Identities=23% Similarity=0.389 Sum_probs=51.6
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCC--eEEEEeecCCCCCceEEEEcccCCCcc------------ccC
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYK--YTIAVMGYGPEDKNAVLELTYNHGVTE------------YDK 310 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~l~l~~~~~~~~------------~~~ 310 (376)
|+|+.+.|+|++++.++|++.+||++......+..+ ..++.++ ...|||....+... ...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~------~~YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG------DGYLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S------SSEEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC------CceEEEEEeCCcccccccccceechhhcC
Confidence 689999999999999999999999998776665433 3455554 23777765221111 124
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHcCCe
Q 017144 311 GNGYAQIAIGTDDVYKTAEAIKLSGGK 337 (376)
Q Consensus 311 g~g~~hiaf~V~Dl~~~~~~l~~~G~~ 337 (376)
+.|+.++++.++|+++..+++++.|++
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 679999999999999999999999976
No 184
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.38 E-value=0.0013 Score=54.32 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=75.4
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCc--c--ccCCCceeEEEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT--E--YDKGNGYAQIAI 319 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~--~--~~~g~g~~hiaf 319 (376)
.+++|.+.+++.+++..++ +.|||+...+.. +....+ +..| ...+.+....... . ..+|++..-++|
T Consensus 9 G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hr--sk~v~l--~rQG----~I~~vln~ep~s~a~~~~~~HG~sv~aiaf 79 (139)
T PF14696_consen 9 GFDFVEFAVPDAQALAQLF-TALGFQPVARHR--SKDVTL--YRQG----DINFVLNSEPDSFAAEFAAQHGPSVCAIAF 79 (139)
T ss_dssp EEEEEEEE-SSTTSCHHHH-CCCCEEEECCEC--CCSEEE--EEET----TEEEEEEEESTSCHHHHHHHHSSEEEEEEE
T ss_pred CeEEEEEecCCHHHHHHHH-HHhCcceEEecC--CcceEE--EEeC----CEEEEEeCCCcchHHHHHHhcCCEEEEEEE
Confidence 4778889999987777777 579999987642 322333 3322 3444443322111 1 146899999999
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEeccc
Q 017144 320 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 370 (376)
Q Consensus 320 ~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 370 (376)
.|+|..++++++.++|.+.+.+|... +...+.-++-++|.++-|+++.+
T Consensus 80 rV~Da~~A~~rA~~~GA~~~~~~~~~--~e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 80 RVDDAAAAYERAVALGAEPVQEPTGP--GELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp EES-HHHHHHHHHHTT--EEEEEEET--T-BEEEEEE-CCC-EEEEEE--S
T ss_pred EeCCHHHHHHHHHHcCCcCcccCCCC--CcEeeeeEEccCCCEEEEEecCC
Confidence 99999999999999999988765322 22477889999999999999863
No 185
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.20 E-value=0.26 Score=39.39 Aligned_cols=96 Identities=19% Similarity=0.342 Sum_probs=52.5
Q ss_pred CChhHHHHHHHHhcCC-EEEEEeecCC------CceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCCHH
Q 017144 123 GDLDKTIKFYTECLGM-KLLRKRDIPE------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVA 195 (376)
Q Consensus 123 ~Dl~~a~~FY~~vLG~-~~~~~~~~~~------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d~d 195 (376)
.+.++|.+||+++||- ++......++ +....+.+..++ ..+...... +....+++ ..+++.++|.+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g----~~lm~~D~~--~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGG----QKLMASDGG--PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETT----EEEEEEEES--TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECC----eEEEEECCC--CCCCCCCc-EEEEEEcCCHH
Confidence 6899999999999995 3333333222 122234444432 122222222 23333344 45888888855
Q ss_pred ---HHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 196 ---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 196 ---~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
+++++|.+-|- +.. .+-.+.|.-|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~----------~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TCC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------ccc-eeEEEEeCCCCEEEeC
Confidence 55667766653 223 6778999999999885
No 186
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.54 E-value=0.02 Score=44.19 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=42.6
Q ss_pred ccccccccCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeC--
Q 017144 245 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD-- 322 (376)
Q Consensus 245 ~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~-- 322 (376)
+..+.|+|+| +++..||+++||-+.. ..+.+....+++- .- +.+.-=++-.+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~G~DL------~~-----~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQGPDL------TI-----ENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE---CCG------SS------TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeeccCCcc------cc-----CCCcEEeeEEEEEEecCc
Confidence 4568899999 8899999999873221 1122222111100 00 0011126678899998
Q ss_pred -CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEE
Q 017144 323 -DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 365 (376)
Q Consensus 323 -Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 365 (376)
|+.++.+++.+.++ .-++ ..++..+.||+|..|+|
T Consensus 65 ~Dl~~L~~~le~~~~--fidK------k~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHLEEQEF--FIDK------KEKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHTTTS-E--E--T------T-SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHhcccce--EecC------CceEEEEECCcceEEEe
Confidence 67777888877432 2222 25899999999999887
No 187
>PF15067 FAM124: FAM124 family
Probab=94.90 E-value=0.21 Score=44.32 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=62.0
Q ss_pred eeEEEEEEeC--ChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCCCCC-CCCCceEEEEE
Q 017144 114 RMLHVVYRVG--DLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYD-IGTGFGHFGIA 190 (376)
Q Consensus 114 ~i~Hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~-~~~g~~hi~f~ 190 (376)
.+--++|.|+ |.+.+++||+-+|+-+...+.. + --+|.-+... .+.+.+.-..-..... ...--.-+.|.
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~--~---FC~F~lys~~--~~~iQlsLK~lp~~~~p~p~esavLqF~ 200 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKE--D---FCFFTLYSQP--GLDIQLSLKQLPPGMSPEPTESAVLQFR 200 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC--C---cEEEEEecCC--CeEEEEEeccCCCCCCcccccceEEEEE
Confidence 6778899999 9999999999999988765443 1 2233333333 3444444422111111 11222347899
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEE
Q 017144 191 VEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (376)
Q Consensus 191 V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 235 (376)
|.|+.++.--|=.--.+|. .++ --..|||||.|-|
T Consensus 201 V~~igqLvpLLPnpc~PIS---------~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 201 VEDIGQLVPLLPNPCSPIS---------ETR-WQTEDYDGNKILL 235 (236)
T ss_pred ecchhhhcccCCCCccccc---------CCc-ceeeCCCCCEecc
Confidence 9999987654422222221 111 2368999999854
No 188
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.38 E-value=0.067 Score=41.29 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=42.5
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCCCceEEEEEEecCCCC---CCCCCCCceEEEEE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD---KYDIGTGFGHFGIA 190 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~---~~~~~~g~~hi~f~ 190 (376)
.+.-+.|+|+| +++++||+++||-++ + ..+.+.+..|.+ +....-++.-+-|.
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~------~-----------------~~l~f~ea~G~DL~~~~~~twDLe~Lkf~ 60 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQL------P-----------------FFLTFQEAQGPDLTIENNETWDLEMLKFQ 60 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHH------T-----------------TTEEEEE---CCGSS-TTSBSSEEEEEEE
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCC------C-----------------ceEEEeeccCCccccCCCcEEeeEEEEEE
Confidence 46789999999 889999999886211 0 012222222211 11122466778899
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEE
Q 017144 191 VE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 235 (376)
Q Consensus 191 V~---d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel 235 (376)
|+ |+.++.+++.+.++=+ + ...+++.+.||.|+-+-+
T Consensus 61 V~~~~Dl~~L~~~le~~~~fi--d------Kk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 61 VPKDFDLAALKSHLEEQEFFI--D------KKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp ES-S--HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EEEE
T ss_pred ecCcccHHHHHHHhcccceEe--c------CCceEEEEECCcceEEEe
Confidence 99 4778888887744322 1 245688899999977654
No 189
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=94.29 E-value=1.2 Score=35.53 Aligned_cols=96 Identities=23% Similarity=0.326 Sum_probs=51.1
Q ss_pred CChhHHHHHHHHhhCCE-EeceecCC------CCCeEEEEeecCCCCCceEEEEcccCCCccccCCCceeEEEEEeCC--
Q 017144 253 GDLDRAINFYKKAFGME-LLRKRDNP------DYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD-- 323 (376)
Q Consensus 253 ~D~~~a~~FY~~~lG~~-~~~~~~~~------~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~D-- 323 (376)
.+.++|.+||.++||-. +......+ ..+.....+..+ +..+..... ...+..+++ ..+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~--~~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDG--GPDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEE--STS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECC--CCCCCCCCc-EEEEEEcCCHH
Confidence 78999999999999843 22222222 122222222221 122222111 122333444 467777776
Q ss_pred -HHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEE
Q 017144 324 -VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 366 (376)
Q Consensus 324 -l~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~ 366 (376)
++++.++|.+.|- + . .++..++|.-|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~---------~-~-~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ---------W-F-SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE---------T-C-CEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC---------c-c-ceeEEEEeCCCCEEEeC
Confidence 4556788887764 2 2 37889999999999986
No 190
>PF15067 FAM124: FAM124 family
Probab=93.07 E-value=0.92 Score=40.38 Aligned_cols=104 Identities=14% Similarity=0.214 Sum_probs=62.3
Q ss_pred CCccccccccC--ChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCCCCceEEEEccc---CCCccccCCCceeEE
Q 017144 243 EPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYN---HGVTEYDKGNGYAQI 317 (376)
Q Consensus 243 ~~~~~v~L~v~--D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~---~~~~~~~~g~g~~hi 317 (376)
..+-.++|.|+ |.+.+.+||+-+|+-++..... + +- .|.-+... +..++|.-. .+.. .....-.-+
T Consensus 127 ~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~--~--FC-~F~lys~~--~~~iQlsLK~lp~~~~--p~p~esavL 197 (236)
T PF15067_consen 127 KEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE--D--FC-FFTLYSQP--GLDIQLSLKQLPPGMS--PEPTESAVL 197 (236)
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC--C--cE-EEEEecCC--CeEEEEEeccCCCCCC--cccccceEE
Confidence 45677888888 9999999999999988754432 2 22 22222222 344444431 1221 122344578
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEE
Q 017144 318 AIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 365 (376)
Q Consensus 318 af~V~Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel 365 (376)
.|.|.|+-+++.-|-.-- .|.+ ....-..|||||.|-|
T Consensus 198 qF~V~~igqLvpLLPnpc---------~PIS-~~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 198 QFRVEDIGQLVPLLPNPC---------SPIS-ETRWQTEDYDGNKILL 235 (236)
T ss_pred EEEecchhhhcccCCCCc---------cccc-CCcceeeCCCCCEecc
Confidence 999999887765432111 1222 2336789999999854
No 191
>PRK11700 hypothetical protein; Provisional
Probab=77.83 E-value=31 Score=29.90 Aligned_cols=119 Identities=17% Similarity=0.088 Sum_probs=64.8
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCC--EEEEEeecCCCceEEEEEeeCCC-----CceEEEEEEecCCCCCCCCCCCceE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGM--KLLRKRDIPEDRYTNAFLGYGPE-----DSHFVVELTYNYGVDKYDIGTGFGH 186 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~--~~~~~~~~~~~~~~~~~l~~g~~-----~~~~~l~l~~~~~~~~~~~~~g~~h 186 (376)
.++|+.|+|++.+.+.++-+..+-. -++... ..+ ...+.+.+... ..--++||.+... ..| ...|..|
T Consensus 39 ~~DHialR~n~~~tAe~w~~~l~~~G~llSen~-ING--RPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Y-p~eGWEH 113 (187)
T PRK11700 39 EADHIALRCNQNETAERWRQGFLQCGELLSENI-ING--RPICLFELDQPLQVGHWSIDCVELPYPGE-KRY-PHEGWEH 113 (187)
T ss_pred cCcEEEEeeCCHHHHHHHHHHHHHhchhhhccc-cCC--eeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCC-CCCCceE
Confidence 6999999999999999999886643 232221 111 12333322211 1123566655422 333 3479999
Q ss_pred EEEEeCC-HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCCCCCccccccccC
Q 017144 187 FGIAVED-VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVG 253 (376)
Q Consensus 187 i~f~V~d-~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~~v~L~v~ 253 (376)
|.+.++. .+.+.+++.+.=-. . ...+.|..+.+.++.....++-.-++.+.
T Consensus 114 IElVlp~~~~t~~~~~~all~~--------~--------~l~~~gikvK~SsPkge~ERL~NPTlAv~ 165 (187)
T PRK11700 114 IELVLPGDPETLDARALALLSD--------E--------GLSLPGIKVKTSSPKGEGERLPNPTLAVT 165 (187)
T ss_pred EEEEecCCcchHHHHHHHhccc--------c--------ccccCCcEEEecCCCccCccCCCCcEEEe
Confidence 9999985 33333332222100 0 11466777777776666555555444443
No 192
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=73.27 E-value=45 Score=26.59 Aligned_cols=116 Identities=17% Similarity=0.245 Sum_probs=65.4
Q ss_pred EEEEeCC----HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeecCCCCCCccccccccCChhHHHHHH
Q 017144 187 FGIAVED----VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFY 262 (376)
Q Consensus 187 i~f~V~d----~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~~v~L~v~D~~~a~~FY 262 (376)
|++-+++ +..+...|.++|+.+. .+.+.|. +.++-+.+.|++++.+..-.
T Consensus 6 ISvFlENk~GRL~~~~~~L~eagINiR------------A~tiAdt--------------~dFGIiRmvV~~~d~A~~~L 59 (142)
T COG4747 6 ISVFLENKPGRLASVANKLKEAGINIR------------AFTIADT--------------GDFGIIRMVVDRPDEAHSVL 59 (142)
T ss_pred EEEEecCCcchHHHHHHHHHHcCCceE------------EEEeccc--------------cCcceEEEEcCChHHHHHHH
Confidence 4444554 6677788888887652 3333333 34555667788999998888
Q ss_pred HHhhCCEEeceecCCCCCeEEEEeecCCC----------CCceEEEEcccCCCccccCCCceeEEEEEeCCHHHHHHHHH
Q 017144 263 KKAFGMELLRKRDNPDYKYTIAVMGYGPE----------DKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAIK 332 (376)
Q Consensus 263 ~~~lG~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~l~l~~~~~~~~~~~g~g~~hiaf~V~Dl~~~~~~l~ 332 (376)
++ -||.+.... ...+-+..-+. +...-++..+ . +..-..-.-+-+.|+|+|++.+.|+
T Consensus 60 ee-~gF~Vr~~d------VlaVEmeD~PG~l~~I~~vl~d~diNldYiY--A---Fv~ek~KAlli~r~ed~d~~~~aLe 127 (142)
T COG4747 60 EE-AGFTVRETD------VLAVEMEDVPGGLSRIAEVLGDADINLDYIY--A---FVTEKQKALLIVRVEDIDRAIKALE 127 (142)
T ss_pred HH-CCcEEEeee------EEEEEecCCCCcHHHHHHHHhhcCcCceeee--e---eeecCceEEEEEEhhHHHHHHHHHH
Confidence 66 588774321 00000010000 0011111111 0 1111133567888999999999999
Q ss_pred HcCCeeec
Q 017144 333 LSGGKITR 340 (376)
Q Consensus 333 ~~G~~~~~ 340 (376)
++|+++..
T Consensus 128 d~gi~~~~ 135 (142)
T COG4747 128 DAGIKLIG 135 (142)
T ss_pred HcCCeecC
Confidence 99998764
No 193
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.82 E-value=53 Score=27.19 Aligned_cols=98 Identities=15% Similarity=0.362 Sum_probs=51.6
Q ss_pred CChhHHHHHHHHhcCC-EEE--EEe--ecCC---CceEEEEEeeCCCCceEEEEEEecCCCCCCCCCCCceEEEEEeCC-
Q 017144 123 GDLDKTIKFYTECLGM-KLL--RKR--DIPE---DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVED- 193 (376)
Q Consensus 123 ~Dl~~a~~FY~~vLG~-~~~--~~~--~~~~---~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~~~g~~hi~f~V~d- 193 (376)
.+.+++.+||.++|-= ++. .+. +.++ +....+-+.+++. -.+.+ .......+.....+. +-+.++|
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~---~f~~l-d~g~~~~f~fneA~S-~~v~~~~q 88 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQ---SFMAL-DGGPNTSFKFNEAFS-FQVACDDQ 88 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCe---EEEEE-cCCCCcCCCcCccEE-EEEEcCCH
Confidence 8999999999998842 222 111 1111 1222333333321 11111 111111122222221 3344555
Q ss_pred --HHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEe
Q 017144 194 --VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 236 (376)
Q Consensus 194 --~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~ 236 (376)
+|++..+|...|.+. ....+++|-.|.-|.|+
T Consensus 89 ~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 89 EEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIV 122 (151)
T ss_pred HHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEc
Confidence 778888888888632 23457999999999998
No 194
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=72.67 E-value=55 Score=27.25 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=43.6
Q ss_pred eEEEEEEeCChhHHHHHHHHhcCC--EEEEEeecCCCceEEEEEeeCCC-----CceEEEEEEecCCCCCCCCCCCceEE
Q 017144 115 MLHVVYRVGDLDKTIKFYTECLGM--KLLRKRDIPEDRYTNAFLGYGPE-----DSHFVVELTYNYGVDKYDIGTGFGHF 187 (376)
Q Consensus 115 i~Hv~l~v~Dl~~a~~FY~~vLG~--~~~~~~~~~~~~~~~~~l~~g~~-----~~~~~l~l~~~~~~~~~~~~~g~~hi 187 (376)
++|+.|+|++.+.+.++-+..+-. -++... ..+ .-.+.+.+... ..--++||.+... ..| ...|+.||
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~-ING--RPI~l~~L~qPl~~~~~~I~cvELP~P~~-k~Y-p~eGWEHI 76 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENE-ING--RPIALIKLEKPLQFAGWSISIVELPFPKD-KKY-PQEGWEHI 76 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccc-cCC--eeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCC-CCCCceEE
Confidence 689999999999999999887643 232221 111 12333322211 1123566655322 333 34799999
Q ss_pred EEEeCC
Q 017144 188 GIAVED 193 (376)
Q Consensus 188 ~f~V~d 193 (376)
.+.++.
T Consensus 77 E~Vlp~ 82 (149)
T cd07268 77 EIVIPS 82 (149)
T ss_pred EEEecC
Confidence 999985
No 195
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=67.33 E-value=63 Score=28.03 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=39.5
Q ss_pred eeEEEEEEeCChhHHHHHHHHhcCCEEE-EEeecCCCceEEEEE------eeCCCCceEEEEEEecCCCCCCCCCCCceE
Q 017144 114 RMLHVVYRVGDLDKTIKFYTECLGMKLL-RKRDIPEDRYTNAFL------GYGPEDSHFVVELTYNYGVDKYDIGTGFGH 186 (376)
Q Consensus 114 ~i~Hv~l~v~Dl~~a~~FY~~vLG~~~~-~~~~~~~~~~~~~~l------~~g~~~~~~~l~l~~~~~~~~~~~~~g~~h 186 (376)
.++|+.++|++.+.+.++-+..+..-.. .+-...+ + ..+.+ .+++. .--++||....+ ..| .-.|+.|
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSen~ING-R-PI~l~~L~qPL~~~~~-~I~~vELP~P~~-K~Y-p~eGWEH 108 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSENMING-R-PICLFKLNQPLQFGGW-SIDCVELPYPKD-KRY-PQEGWEH 108 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETT-E-EEEEEEEEEEEEETTE-EEEEEEEE---S-S---SS-EEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCC-e-eEEEEEcCCchhcCCe-eEEEEEeCCCCC-CCC-CCCCceE
Confidence 6999999999999999999998755432 2222222 1 12222 22221 123566665433 233 3479999
Q ss_pred EEEEeCC
Q 017144 187 FGIAVED 193 (376)
Q Consensus 187 i~f~V~d 193 (376)
|.|.++.
T Consensus 109 IE~Vip~ 115 (185)
T PF06185_consen 109 IEFVIPS 115 (185)
T ss_dssp EEEE--S
T ss_pred EEEEecC
Confidence 9999985
No 196
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=61.67 E-value=30 Score=25.45 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCCCEEEEeec
Q 017144 193 DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 238 (376)
Q Consensus 193 d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 238 (376)
+.+++.+.+.+.|+.+..- +...++.+-++..|.||..+|+.-.
T Consensus 30 ~~~~~~~~l~~~G~~v~~v--e~~~~g~yev~~~~~dG~~~ev~vD 73 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV--EFDDDGCYEVEARDKDGKKVEVYVD 73 (83)
T ss_pred CHHHHHHHHHhcCCceEEE--EEcCCCEEEEEEEECCCCEEEEEEc
Confidence 6888999999999976543 3323456888899999999999743
No 197
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.18 E-value=31 Score=24.12 Aligned_cols=29 Identities=7% Similarity=0.050 Sum_probs=22.3
Q ss_pred ceeEEEEEe--CCHHHHHHHHHHcCCeeecC
Q 017144 313 GYAQIAIGT--DDVYKTAEAIKLSGGKITRE 341 (376)
Q Consensus 313 g~~hiaf~V--~Dl~~~~~~l~~~G~~~~~~ 341 (376)
+...+.|.+ +|.+.+.+.|+++|+++.|+
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 344455555 48889999999999999875
No 198
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.99 E-value=32 Score=23.35 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.4
Q ss_pred CceeEEEEEeCCHHHHHHHHHHcCCee
Q 017144 312 NGYAQIAIGTDDVYKTAEAIKLSGGKI 338 (376)
Q Consensus 312 ~g~~hiaf~V~Dl~~~~~~l~~~G~~~ 338 (376)
.+...+.|.+++.+.+.+.|+++|+++
T Consensus 38 ~~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 38 GGKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CCeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 355778999999999999999999875
No 199
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=50.90 E-value=41 Score=24.72 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEecc
Q 017144 323 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 369 (376)
Q Consensus 323 Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 369 (376)
...++.+.+++.|+++..-..+..+ .+-+...|.||..+|+.=++
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g--~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDG--CYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCC--EEEEEEEECCCCEEEEEEcC
Confidence 6889999999999965432221222 36678999999999995443
No 200
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.64 E-value=1.5e+02 Score=24.69 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHcCCeeecCCccCCCCCceEEEEECCCCCeEEEEec
Q 017144 323 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 368 (376)
Q Consensus 323 Dl~~~~~~l~~~G~~~~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 368 (376)
.+|+...+|...|.+- ....++.|--|..|+|+=+
T Consensus 90 E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 90 EIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred HHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcHH
Confidence 4788888998888621 3567999999999999644
No 201
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.63 E-value=2.2e+02 Score=24.26 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=45.2
Q ss_pred eeeEEEEEEeCChhHHHHHHHHhc--CCEEEEEeecCCCceEEEEEeeCCC--Cce---EEEEEEecCCCCCCCCCCCce
Q 017144 113 RRMLHVVYRVGDLDKTIKFYTECL--GMKLLRKRDIPEDRYTNAFLGYGPE--DSH---FVVELTYNYGVDKYDIGTGFG 185 (376)
Q Consensus 113 ~~i~Hv~l~v~Dl~~a~~FY~~vL--G~~~~~~~~~~~~~~~~~~l~~g~~--~~~---~~l~l~~~~~~~~~~~~~g~~ 185 (376)
..++|+.|+|.+.+-+..+-...+ |--+++..-+ + ...+.+.+... -.| -+++|..... ..|+ -.|..
T Consensus 38 ~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n~iN--G-RpI~li~l~~Pl~v~~w~id~iELP~P~~-K~YP-~egWE 112 (185)
T COG3102 38 YTADHIALRVHQEQTAKRWRRGLLQCGELLSENLIN--G-RPICLIKLHQPLQVAHWQIDIIELPYPKN-KRYP-HEGWE 112 (185)
T ss_pred cccceeEEEeCcHHHHHHHHHHHHHHHHHhhhhhcC--C-ceEEEEEcCCcceecceEEEEEEccCCcC-CCCC-CcCce
Confidence 379999999999888877765544 3323222111 1 12333332211 001 1445544322 3343 46899
Q ss_pred EEEEEeCC-HHHHHHHH
Q 017144 186 HFGIAVED-VAKTVDLV 201 (376)
Q Consensus 186 hi~f~V~d-~d~~~~rl 201 (376)
||.|..+. .+.+..+.
T Consensus 113 HIEiVlP~~peel~~~~ 129 (185)
T COG3102 113 HIEIVLPGDPEELNARA 129 (185)
T ss_pred eEEEEcCCChHHHHHHH
Confidence 99999984 55554443
No 202
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=38.79 E-value=22 Score=23.04 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=20.4
Q ss_pred CCccccccccCChhHHHHHHHHhhC
Q 017144 243 EPLCQVMLRVGDLDRAINFYKKAFG 267 (376)
Q Consensus 243 ~~~~~v~L~v~D~~~a~~FY~~~lG 267 (376)
++++...+.+.+.++..+||..+|-
T Consensus 10 gp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CccccCCCccccccchhHHHHHHHH
Confidence 4566777778889999999998873
No 203
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.76 E-value=80 Score=21.91 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=20.3
Q ss_pred EEEEEe--CCHHHHHHHHHHcCCeeecC
Q 017144 186 HFGIAV--EDVAKTVDLVKAKGGKVTRE 211 (376)
Q Consensus 186 hi~f~V--~d~d~~~~rl~~~G~~i~~~ 211 (376)
.+.|.+ +|.+++.+.|+++|+++.++
T Consensus 44 ~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 44 ILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 345555 48889999999999998764
No 204
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.06 E-value=1.6e+02 Score=21.21 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCeeecCCeecCC-CCeEEEEEEcCCCCEE
Q 017144 194 VAKTVDLVKAKGGKVTREPGPVKG-GNTVIAFIEDPDGYKF 233 (376)
Q Consensus 194 ~d~~~~rl~~~G~~i~~~p~~~~~-~~~~~~~~~DPdG~~i 233 (376)
+.++.+.+...|+.+....-...+ .-...||+.|.+|..+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 567778889999888654322222 2345889999999876
No 205
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=26.91 E-value=3.9e+02 Score=22.63 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=46.7
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEEEcCCC------CEEEEe---------ecCCCC-CC---ccc
Q 017144 187 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDG------YKFELL---------ERGPTP-EP---LCQ 247 (376)
Q Consensus 187 i~f~V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~~DPdG------~~iel~---------~~~~~~-~~---~~~ 247 (376)
+=+.+.|.+++.++|.+.|...... . ...=.||..|++ -.+.+- -.+|.. .. -..
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~--~----~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E 79 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKK--E----FQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKE 79 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccc--c----ceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEE
Confidence 3467889999999999998654321 0 112334444442 112222 222211 11 122
Q ss_pred cccccCChhHHHHHHHHhhCCEEece
Q 017144 248 VMLRVGDLDRAINFYKKAFGMELLRK 273 (376)
Q Consensus 248 v~L~v~D~~~a~~FY~~~lG~~~~~~ 273 (376)
+...|.|.+...+.+. .||++....
T Consensus 80 ~e~~v~d~~~~~~iL~-~LG~~~~~~ 104 (174)
T TIGR00318 80 IEFKIEDIENALQILK-KLGFKKVYE 104 (174)
T ss_pred EEEEECCHHHHHHHHH-HCCCeEEEE
Confidence 5567899999999996 699997544
No 206
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=26.40 E-value=1.5e+02 Score=27.87 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCCCceEEEEEe------CCHHHHHHHHHHcCCeee
Q 017144 180 IGTGFGHFGIAV------EDVAKTVDLVKAKGGKVT 209 (376)
Q Consensus 180 ~~~g~~hi~f~V------~d~d~~~~rl~~~G~~i~ 209 (376)
.|..++|+.+.| .|++++.+.|+++|+++.
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 356799999999 999999999999998875
No 207
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=25.94 E-value=1.5e+02 Score=21.86 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=16.9
Q ss_pred EEeCChhHHHHHHHHhcCCEEEEE
Q 017144 120 YRVGDLDKTIKFYTECLGMKLLRK 143 (376)
Q Consensus 120 l~v~Dl~~a~~FY~~vLG~~~~~~ 143 (376)
+...+-+.|.++|++ |||+....
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEEE
Confidence 445688899999998 99998754
No 208
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.78 E-value=1.5e+02 Score=21.81 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=23.4
Q ss_pred CceeEEEEEeCC----HHHHHHHHHHcCCeeec
Q 017144 312 NGYAQIAIGTDD----VYKTAEAIKLSGGKITR 340 (376)
Q Consensus 312 ~g~~hiaf~V~D----l~~~~~~l~~~G~~~~~ 340 (376)
.+...+.++|+| ++++.+.|+++|+++..
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 344567788888 89999999999998764
No 209
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=23.70 E-value=42 Score=20.12 Aligned_cols=24 Identities=25% Similarity=0.660 Sum_probs=17.2
Q ss_pred cccccccCChhHHHHHHHHhhCCE
Q 017144 246 CQVMLRVGDLDRAINFYKKAFGME 269 (376)
Q Consensus 246 ~~v~L~v~D~~~a~~FY~~~lG~~ 269 (376)
+.+-....|.++|+.+|++.|.+.
T Consensus 6 g~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 6 GRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344456789999999999977543
No 210
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=23.05 E-value=3.6e+02 Score=23.41 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=37.1
Q ss_pred CccccccccCChhHHHHHHHHhhCCEEeceecCCCCCe-EEEEeecCC---CCCceEEEEcccCCCccccCCCceeEEEE
Q 017144 244 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKY-TIAVMGYGP---EDKNAVLELTYNHGVTEYDKGNGYAQIAI 319 (376)
Q Consensus 244 ~~~~v~L~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~l~~~~---~~~~~~l~l~~~~~~~~~~~g~g~~hiaf 319 (376)
.++|+.|+|.+.+.+.+|-+..+-.-..-....-.++. .++-+...- +-.-..+||.++.+ +.| +-.|.-|+-|
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~-K~Y-p~eGWEHIE~ 111 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKD-KRY-PQEGWEHIEF 111 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---S-S---SS-EEEEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC-CCC-CCCCceEEEE
Confidence 47999999999999999998877544321111112221 111111100 01134456665433 222 3468889999
Q ss_pred EeC
Q 017144 320 GTD 322 (376)
Q Consensus 320 ~V~ 322 (376)
.++
T Consensus 112 Vip 114 (185)
T PF06185_consen 112 VIP 114 (185)
T ss_dssp E--
T ss_pred Eec
Confidence 885
No 211
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=21.82 E-value=2.3e+02 Score=21.94 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=38.6
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeecCCCCeEEEEE--EcCCCCEE--EEeecCCCCCCccccccccCChhHHHHHHH
Q 017144 191 VEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFI--EDPDGYKF--ELLERGPTPEPLCQVMLRVGDLDRAINFYK 263 (376)
Q Consensus 191 V~d~d~~~~rl~~~G~~i~~~p~~~~~~~~~~~~~--~DPdG~~i--el~~~~~~~~~~~~v~L~v~D~~~a~~FY~ 263 (376)
..+.+.+.++|++.++-.... +..++ +.+.+|+ ++..|..+ |+.-.. ..+-..+++.+.+.+-+..|+.
T Consensus 35 ~~~~~~i~~~L~~~nI~~iA~-~~~~~-~~~~~y~s~~~~~~~~fL~El~~~~--~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 35 VPSPDAIEEKLQANNIFTIAS-GKVDN-GQKFFYFSAKTTNGIWFLVELTIDP--GSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp ---HHHHHHHHHCTT-EEEEE-EECTT--EEEEEEEEEBTTS-EEEEEEEE-T--T-SSEEEEEEESSCCCHHHHHH
T ss_pred CCcHHHHHHHHHHCCEEEEec-CCCCc-cccEEEEEEEcCCCcEEEEEEEEcC--CCccEEEEEecCCHHHHHHHHH
Confidence 347899999999999976543 33332 3444444 46666544 443322 2335677888888877666664
No 212
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.48 E-value=3e+02 Score=24.67 Aligned_cols=36 Identities=17% Similarity=0.443 Sum_probs=24.0
Q ss_pred CChhHHHHHHHHhcCCEEEEEeecCCCceEEEEEeeCCC
Q 017144 123 GDLDKTIKFYTECLGMKLLRKRDIPEDRYTNAFLGYGPE 161 (376)
Q Consensus 123 ~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~ 161 (376)
.|+.++..||.+.||+++..-.+ .....+|-.+.+.
T Consensus 145 a~~~e~a~wy~dyLGleie~~hg---evikfiFTnIdpk 180 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGHG---EVIKFIFTNIDPK 180 (246)
T ss_pred hccHHHHHHHHHhcCceeeeccC---ceEEEEEeccCCC
Confidence 57888999999999999854221 1224455555554
No 213
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.75 E-value=1.9e+02 Score=25.88 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=26.2
Q ss_pred cCChhHHHHHHHHhhCCEEeceecCCCCCeEEEEeecCCC
Q 017144 252 VGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPE 291 (376)
Q Consensus 252 v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~ 291 (376)
..|..+++.||.+.||+++.... +.....+|....+.
T Consensus 144 sa~~~e~a~wy~dyLGleie~~h---gevikfiFTnIdpk 180 (246)
T KOG4657|consen 144 SADIHEAASWYNDYLGLEIEAGH---GEVIKFIFTNIDPK 180 (246)
T ss_pred hhccHHHHHHHHHhcCceeeecc---CceEEEEEeccCCC
Confidence 46788999999999999985432 33456666665444
No 214
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.35 E-value=3.3e+02 Score=19.78 Aligned_cols=48 Identities=8% Similarity=0.011 Sum_probs=31.7
Q ss_pred EEEEeCC----HHHHHHHHHHcCCeeecCCccCCCC-CceEEEEECCCCCeEE
Q 017144 317 IAIGTDD----VYKTAEAIKLSGGKITREPGPLPGI-NTKITACLDPDGWKSV 364 (376)
Q Consensus 317 iaf~V~D----l~~~~~~l~~~G~~~~~~p~~~~~~-~~~~~~~~DPdG~~ie 364 (376)
+.+...| +......+.+.|+.+....-...+. ....+|++|.+|..+.
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 3444455 5667788999998877543322221 1367999999999763
Done!