Your job contains 1 sequence.
>017145
MEQELVELFDAAKKAADSAAIDGVSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRL
RPLTKHPREKIQIVASNLLDIWKKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKV
QKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAVKVEKIIEEEK
QAPSVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDP
IRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSP
EEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPM
TTYVTCVNCSKRWKFC
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017145
(376 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 1062 2.1e-107 1
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 345 1.2e-41 2
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 348 4.6e-40 2
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 325 4.6e-40 2
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 343 5.8e-40 2
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 343 9.4e-40 2
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 343 9.4e-40 2
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 341 1.2e-39 2
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 328 2.5e-39 2
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 328 2.5e-39 2
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 338 3.2e-39 2
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 329 8.3e-39 2
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 327 8.3e-39 2
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 327 1.3e-38 2
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 328 1.7e-38 2
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 327 2.2e-38 2
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 330 5.7e-38 2
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 327 1.2e-37 2
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 332 8.2e-37 2
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 283 1.5e-35 2
POMBASE|SPAC20H4.03c - symbol:tfs1 "transcription elongat... 314 8.1e-35 2
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 349 7.7e-32 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 348 9.8e-32 1
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 345 2.0e-31 1
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 341 5.4e-31 1
ASPGD|ASPL0000075205 - symbol:AN4861 species:162425 "Emer... 275 6.1e-31 2
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 333 3.8e-30 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 333 3.8e-30 1
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 333 3.8e-30 1
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 333 3.8e-30 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 332 4.9e-30 1
GENEDB_PFALCIPARUM|PF07_0057 - symbol:PF07_0057 "transcri... 265 8.8e-30 2
UNIPROTKB|Q8IBV2 - symbol:PF07_0057 "Transcription elonga... 265 8.8e-30 2
CGD|CAL0002729 - symbol:orf19.4537 species:5476 "Candida ... 329 1.0e-29 1
TAIR|locus:2052351 - symbol:AT2G42730 species:3702 "Arabi... 335 2.0e-29 1
SGD|S000003011 - symbol:DST1 "General transcription elong... 282 2.9e-29 2
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 236 2.6e-28 2
WB|WBGene00012000 - symbol:T24H10.1 species:6239 "Caenorh... 315 3.1e-28 1
TAIR|locus:2124097 - symbol:AT4G18720 species:3702 "Arabi... 297 2.5e-26 1
UNIPROTKB|F1LV22 - symbol:F1LV22 "Uncharacterized protein... 227 4.0e-25 2
DICTYBASE|DDB_G0278241 - symbol:tcea1 "RNA polymerase II ... 283 7.6e-25 1
FB|FBgn0030663 - symbol:CG8117 species:7227 "Drosophila m... 279 2.0e-24 1
TAIR|locus:504954948 - symbol:AT5G42325 species:3702 "Ara... 229 5.1e-19 1
UNIPROTKB|B7Z4S1 - symbol:TCEA1 "Transcription elongation... 214 2.9e-17 1
UNIPROTKB|G5E5M1 - symbol:PHF3 "Uncharacterized protein" ... 203 9.3e-13 1
UNIPROTKB|I3L6H4 - symbol:I3L6H4 "Uncharacterized protein... 172 1.6e-12 1
UNIPROTKB|E7ER40 - symbol:PHF3 "PHD finger protein 3" spe... 193 4.3e-12 1
UNIPROTKB|E7EVH3 - symbol:PHF3 "PHD finger protein 3" spe... 193 5.8e-12 1
UNIPROTKB|Q92576 - symbol:PHF3 "PHD finger protein 3" spe... 193 1.3e-11 1
UNIPROTKB|E2R727 - symbol:PHF3 "Uncharacterized protein" ... 192 1.7e-11 1
RGD|1304925 - symbol:Phf3 "PHD finger protein 3" species:... 198 3.0e-11 2
UNIPROTKB|E1BVY1 - symbol:PHF3 "Uncharacterized protein" ... 190 2.1e-10 2
ZFIN|ZDB-GENE-030131-6117 - symbol:dido1 "death inducer-o... 179 6.9e-10 2
TAIR|locus:2050311 - symbol:AT2G25640 species:3702 "Arabi... 153 2.6e-09 2
UNIPROTKB|F1PLS2 - symbol:DIDO1 "Uncharacterized protein"... 167 7.3e-09 1
UNIPROTKB|E2R336 - symbol:SPOCD1 "Uncharacterized protein... 162 1.0e-08 1
UNIPROTKB|F1NFF0 - symbol:Gga.41084 "Uncharacterized prot... 166 1.5e-08 1
UNIPROTKB|F1NGH5 - symbol:Gga.41084 "Uncharacterized prot... 166 1.5e-08 1
UNIPROTKB|I3LFG3 - symbol:SPOCD1 "Uncharacterized protein... 144 5.0e-08 1
UNIPROTKB|E1BRR3 - symbol:TCEANC "Uncharacterized protein... 129 6.9e-08 2
CGD|CAL0004345 - symbol:RPC11 species:5476 "Candida albic... 127 1.4e-07 1
TAIR|locus:2179419 - symbol:AT5G25520 species:3702 "Arabi... 158 1.7e-07 2
ASPGD|ASPL0000042794 - symbol:AN1777 species:162425 "Emer... 152 1.7e-07 1
UNIPROTKB|E1BCR2 - symbol:DIDO1 "Uncharacterized protein"... 154 3.1e-07 1
SGD|S000002452 - symbol:RPC11 "RNA polymerase III subunit... 123 3.8e-07 1
UNIPROTKB|Q9BTC0 - symbol:DIDO1 "Death-inducer obliterato... 153 4.0e-07 1
FB|FBgn0082831 - symbol:pps "protein partner of snf" spec... 162 4.9e-07 2
UNIPROTKB|F1SV96 - symbol:SPOCD1 "Uncharacterized protein... 154 5.6e-07 2
ZFIN|ZDB-GENE-090313-207 - symbol:phf3 "PHD finger protei... 150 6.3e-07 1
WB|WBGene00007616 - symbol:rpoa-12 species:6239 "Caenorha... 121 6.3e-07 1
UNIPROTKB|F1SRI2 - symbol:TCEANC "Uncharacterized protein... 130 6.6e-07 2
MGI|MGI:1344352 - symbol:Dido1 "death inducer-obliterator... 156 9.0e-07 2
TAIR|locus:2144211 - symbol:AT5G11430 species:3702 "Arabi... 136 1.0e-06 2
UNIPROTKB|H0YF46 - symbol:SPOCD1 "SPOC domain-containing ... 136 1.0e-06 1
TAIR|locus:2054080 - symbol:AT2G13640 species:3702 "Arabi... 139 1.3e-06 1
UNIPROTKB|F1MG39 - symbol:F1MG39 "Uncharacterized protein... 145 1.4e-06 1
FB|FBgn0061362 - symbol:CG33785 species:7227 "Drosophila ... 117 1.7e-06 1
TAIR|locus:2035322 - symbol:AT1G01210 species:3702 "Arabi... 113 4.7e-06 1
UNIPROTKB|E2QZU0 - symbol:POLR3K "DNA-directed RNA polyme... 112 6.1e-06 1
UNIPROTKB|Q9Y2Y1 - symbol:POLR3K "DNA-directed RNA polyme... 112 6.1e-06 1
ZFIN|ZDB-GENE-040718-291 - symbol:polr3k "polymerase (RNA... 112 6.1e-06 1
UNIPROTKB|F1N3E8 - symbol:POLR3K "DNA-directed RNA polyme... 111 7.8e-06 1
UNIPROTKB|F2Z4X7 - symbol:POLR3K "DNA-directed RNA polyme... 111 7.8e-06 1
MGI|MGI:1914255 - symbol:Polr3k "polymerase (RNA) III (DN... 111 7.8e-06 1
RGD|1303114 - symbol:Znrd1 "zinc ribbon domain containing... 111 7.8e-06 1
UNIPROTKB|Q5FVH1 - symbol:Polr3k "DNA-directed RNA polyme... 111 7.8e-06 1
POMBASE|SPCC645.13 - symbol:SPCC645.13 "transcription elo... 136 7.8e-06 1
UNIPROTKB|E9PPM7 - symbol:SPOCD1 "SPOC domain-containing ... 135 8.5e-06 1
TAIR|locus:2146415 - symbol:AT5G27310 species:3702 "Arabi... 129 1.7e-05 1
UNIPROTKB|Q6ZMY3 - symbol:SPOCD1 "SPOC domain-containing ... 139 1.7e-05 2
CGD|CAL0006382 - symbol:RPA12 species:5476 "Candida albic... 107 2.1e-05 1
UNIPROTKB|Q2M2S7 - symbol:POLR3K "DNA-directed RNA polyme... 107 2.1e-05 1
DICTYBASE|DDB_G0278963 - symbol:DDB_G0278963 species:4468... 135 2.2e-05 1
UNIPROTKB|H0YF26 - symbol:TCEANC "Transcription elongatio... 124 3.1e-05 1
POMBASE|SPAC22A12.05 - symbol:rpc11 "DNA-directed RNA pol... 105 3.5e-05 1
UNIPROTKB|A0JNK7 - symbol:LOC504389 "Uncharacterized prot... 126 3.7e-05 1
UNIPROTKB|G5EHE0 - symbol:MGCH7_ch7g875 "DNA-directed RNA... 104 4.5e-05 1
UNIPROTKB|Q8N8B7 - symbol:TCEANC "Transcription elongatio... 124 5.4e-05 1
TAIR|locus:2120527 - symbol:AT4G07950 species:3702 "Arabi... 103 5.8e-05 1
TAIR|locus:2051139 - symbol:AT2G33300 species:3702 "Arabi... 121 7.0e-05 1
WARNING: Descriptions of 26 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
Identities = 216/386 (55%), Positives = 278/386 (72%)
Query: 1 MEQELVELFXXXXXXXXXXXIDGVSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRL 60
ME +L++LF +DGV+S GPEVS+C+DALK+LK FPVTYD LV+TQVGK+L
Sbjct: 1 MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60
Query: 61 RPLTKHPREKIQIVASNLLDIWKKIVIEETTRNKKN-GSTGDKSSVTTGVVKPDSGKIDK 119
R L KHP E I+ VA++LL+IWKK+VIEET + KK G+ G K + V K D ++K
Sbjct: 61 RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAK---VNKMD---VEK 114
Query: 120 VQKTSAVKVEKVS---TAETVKVEKTGSVSRSET-VQVEKKE-----TNGDSVMDRGEAX 170
+ VKV+K+ +A+++KVE+ ++ T V++E+K TNG + RG+A
Sbjct: 115 PSNPAPVKVQKLQRGDSAKSIKVERKEPDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAV 174
Query: 171 XXXXXXXXXXQAPSVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEE 230
S++ P++ A PKLT ++KCND RDKIRELL AL +V EAD+
Sbjct: 175 KDEKVSKDNQS--SMKAPAKAANAPPKLTAMLKCNDPVRDKIRELLVEALCRVAGEADDY 232
Query: 231 IIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEV 290
+ VNA DP+RVAVSVES+MFEKLGRSTGA+KLKYRSIMFN+RD NPDLR+RVL GE+
Sbjct: 233 ERESVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEI 292
Query: 291 TPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQ 350
+PE+L+T+S E+MASD+R+++ IKEKALF+C+RG A A+TDQFKC RCGQRKCTYYQ
Sbjct: 293 SPEKLITLSAEDMASDKRKQENNQIKEKALFDCERGLAAKASTDQFKCGRCGQRKCTYYQ 352
Query: 351 MQTRSADEPMTTYVTCVNCSKRWKFC 376
MQTRSADEPMTTYVTCVNC WKFC
Sbjct: 353 MQTRSADEPMTTYVTCVNCDNHWKFC 378
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 345 (126.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 71/172 (41%), Positives = 105/172 (61%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
+DS R K RE+L+NAL + ++ I + CD + +E +F + + K
Sbjct: 145 SDSVRIKCREMLSNAL-----QTGDDYITIGSDCDEL--GAQIEECIFLEFKNTDMKYKN 197
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
+ RS + N++D KNP+LR+ VL G V+P+R+ M+ EEMASDE + +N+ ++A+ + Q
Sbjct: 198 RVRSRISNLKDAKNPNLRRNVLCGNVSPDRIAKMTAEEMASDELKEMRKNLTKEAIRDHQ 257
Query: 325 RGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++KCTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 258 VATSGGTQTDLFTCGKCKKKKCTYTQVQTRSADEPMTTFVFCNECGNRWKFC 309
Score = 113 (44.8 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 35/129 (27%), Positives = 67/129 (51%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPRE-KIQIVASNLLDIWKKIVIEETTRN 93
+D LK LK+ P+T ++L ST++G + + K + ++ +A +L+ WKK+ ++E +
Sbjct: 29 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDDEVTSLAKSLIKSWKKL-LDEPAAD 87
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAV----KVEKVS-TAETVKVEKTGSVSRS 148
K S K TT VV P + +++S+ K E V T T+ + S
Sbjct: 88 KN--SEEKKKERTTPVVSPSETSPEPREESSSSNSSSKSESVDVTPNTLIATFPRAPGTS 145
Query: 149 ETVQVEKKE 157
++V+++ +E
Sbjct: 146 DSVRIKCRE 154
Score = 39 (18.8 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 16/82 (19%), Positives = 33/82 (40%)
Query: 196 PKLTQLIKCNDSSRDKIRELLANAL-SKVTSEADEEIIDEVNACDPIRVAVSVESVMFEK 254
P L + + C + S D+I ++ A + S E + + E + + ++ +F
Sbjct: 212 PNLRRNVLCGNVSPDRIAKMTAEEMASDELKEMRKNLTKEAIRDHQVATSGGTQTDLFT- 270
Query: 255 LGRSTGAEKLKYRSIMFNIRDE 276
G+ +K Y + DE
Sbjct: 271 CGKCK-KKKCTYTQVQTRSADE 291
Score = 37 (18.1 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 25/113 (22%), Positives = 46/113 (40%)
Query: 61 RPLTKHPREKIQIVASNLLDIWKKI--VIE--ETTRNKKNGSTGDKSSVTTGVVKPDSGK 116
+ + K ++K + A +LL K I +E ++TR + + K S V
Sbjct: 14 KKMDKMAQKKNGVGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDDEVTSLAKSL 73
Query: 117 IDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEA 169
I +K ++ E K T VS SET ++E++ + + E+
Sbjct: 74 IKSWKKLLDEPAADKNSEEKKKERTTPVVSPSETSPEPREESSSSNSSSKSES 126
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 348 (127.6 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 75/199 (37%), Positives = 116/199 (58%)
Query: 183 PSVRKPSQGTI-ATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNA 237
PS ++P +TP++T + C D+ R+K RE+L AL + D + +
Sbjct: 109 PSRKRPELPRAPSTPRITTFPPVPVTC-DAVRNKCREMLTAAL-----QTDHDHVAIGAD 162
Query: 238 CDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVT 297
C+ R++ +E +F +G + K + RS + N++D KNPDLR+ VL G +TP+++
Sbjct: 163 CE--RLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAV 220
Query: 298 MSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSAD 357
M+ EEMASDE + + + ++A+ E Q TD F C +C ++ CTY Q+QTRS+D
Sbjct: 221 MTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSD 280
Query: 358 EPMTTYVTCVNCSKRWKFC 376
EPMTT+V C C RWKFC
Sbjct: 281 EPMTTFVVCNECGNRWKFC 299
Score = 95 (38.5 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D L+ LK+ P+T +L ST+VG + L K E++ +A +L+ WKK++ +
Sbjct: 28 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 87
Query: 94 KKNG 97
++ G
Sbjct: 88 RERG 91
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 325 (119.5 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 71/172 (41%), Positives = 100/172 (58%)
Query: 206 DSSRDKIRELLANALSKVTSEADEEIIDEVNAC-DPIRVAVSVESVMFEKLGRSTGAEKL 264
D+ R K RE+LA AL K+ E E C +P +A +E ++ + + K
Sbjct: 151 DAVRIKCREMLATAL-KI-GEVPE-------GCGEPEEMAAELEDAIYSEFNNTDMKYKN 201
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
+ RS + N++D KNP LR + G VT ++L M+PEEMASDE ++ E ++A+ + Q
Sbjct: 202 RIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQ 261
Query: 325 RGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD KC++C +R CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 262 LATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKFC 313
Score = 118 (46.6 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 32/128 (25%), Positives = 60/128 (46%)
Query: 24 VSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPRE-KIQIVASNLLDIW 82
++S G + +D LK L++ + D+L T++G + L K ++ ++ +A L+ W
Sbjct: 17 MASDGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNW 76
Query: 83 KKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKT 142
K+ + N S + SS + K S K + + K + S++ + EK
Sbjct: 77 KRFLASPAPTTPNNSSAKEGSSNNSSASKSTSAA--KSSSSISGKDKSSSSSSSKDKEKK 134
Query: 143 GSVSRSET 150
GS S S+T
Sbjct: 135 GSTSSSQT 142
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 343 (125.8 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 78/198 (39%), Positives = 117/198 (59%)
Query: 184 SVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNAC 238
S +KP T +TP++T I C D+ R+K RE+L AL ++ D + VN C
Sbjct: 110 SCKKPDPPRTPSTPRITTFPQVPITC-DAVRNKCREMLTLALQ---TDHDHVAVG-VN-C 163
Query: 239 DPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTM 298
+ ++ +E +F +G + K + RS + N++D KNP LR+ VL G +TP+++ M
Sbjct: 164 E--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVM 221
Query: 299 SPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADE 358
+ EEMASDE + + + ++A+ E Q TD F C++C ++ CTY Q+QTRS+DE
Sbjct: 222 TSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDE 281
Query: 359 PMTTYVTCVNCSKRWKFC 376
PMTTYV C C RWKFC
Sbjct: 282 PMTTYVVCNECGNRWKFC 299
Score = 99 (39.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKI--VIEETT 91
+D L+ LK+ P+T +L ST+VG + L K E++ +A +L+ WKK+ V + +
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKS 86
Query: 92 RNKKNG-----STGDKSSVTTGVV--KPD 113
RN+ G S+ +S TT + KPD
Sbjct: 87 RNQGRGTPLPTSSSKDASRTTDLSCKKPD 115
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 343 (125.8 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 76/198 (38%), Positives = 116/198 (58%)
Query: 184 SVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNAC 238
S +KP T +TP++T I C D+ R+K RE+L AL + D + + +C
Sbjct: 110 SCKKPDPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVAVGVSC 163
Query: 239 DPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTM 298
+ ++ +E +F +G + K + RS + N++D KNP LR+ VL G +TP+++ M
Sbjct: 164 E--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVM 221
Query: 299 SPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADE 358
+ EEMASDE + + + ++A+ E Q TD F C++C ++ CTY Q+QTRS+DE
Sbjct: 222 TSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDE 281
Query: 359 PMTTYVTCVNCSKRWKFC 376
PMTTYV C C RWKFC
Sbjct: 282 PMTTYVVCNECGNRWKFC 299
Score = 97 (39.2 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D L+ LK+ P+T +L ST+VG + L K E++ +A +L+ WKK++ +
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL---DVSD 83
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKV 139
K+ G + + T K SG D S K + T+ T ++
Sbjct: 84 GKSRDQGRGTPLPTSSSKDASGTTD----LSCKKPDPPRTSSTPRI 125
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 343 (125.8 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 76/198 (38%), Positives = 116/198 (58%)
Query: 184 SVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNAC 238
S +KP T +TP++T I C D+ R+K RE+L AL + D + + +C
Sbjct: 110 SCKKPDPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVAVGVSC 163
Query: 239 DPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTM 298
+ ++ +E +F +G + K + RS + N++D KNP LR+ VL G +TP+++ M
Sbjct: 164 E--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVM 221
Query: 299 SPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADE 358
+ EEMASDE + + + ++A+ E Q TD F C++C ++ CTY Q+QTRS+DE
Sbjct: 222 TSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDE 281
Query: 359 PMTTYVTCVNCSKRWKFC 376
PMTTYV C C RWKFC
Sbjct: 282 PMTTYVVCNECGNRWKFC 299
Score = 97 (39.2 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D L+ LK+ P+T +L ST+VG + L K E++ +A +L+ WKK++ +
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL---DVSD 83
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKV 139
K+ G + + T K SG D S K + T+ T ++
Sbjct: 84 GKSRDQGRGTPLPTSSSKDASGTTD----LSCKKPDPPRTSSTPRI 125
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 341 (125.1 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 76/201 (37%), Positives = 115/201 (57%)
Query: 181 QAPSVRKPSQGTI-ATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEV 235
Q PS ++P + +TP++T + C D+ R K RE+L AL ++ D I
Sbjct: 108 QDPSRKRPELPRMPSTPRITTFPPVPVTC-DAVRTKCREMLTAALQ---TDHDHVAIGAD 163
Query: 236 NACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERL 295
C +A +E +F +G + K + RS + N++D KNP LR++VL G +TP+++
Sbjct: 164 CEC----LAGQIEECIFRDVGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQI 219
Query: 296 VTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRS 355
M+ EEMASDE + + + ++A+ E Q TD F C +C ++ CTY Q+QTRS
Sbjct: 220 AVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRS 279
Query: 356 ADEPMTTYVTCVNCSKRWKFC 376
+DEPMTT+V C C RWKFC
Sbjct: 280 SDEPMTTFVVCNECGNRWKFC 300
Score = 98 (39.6 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIV--IEETT 91
+D L+ LK+ PVT +L ST+VG + L K E++ +A +L+ WKK++ +
Sbjct: 28 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLDASDAKA 87
Query: 92 RNKKNGSTGDKSS 104
R ++ G + SS
Sbjct: 88 RERRRGGSLPTSS 100
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 328 (120.5 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 70/172 (40%), Positives = 101/172 (58%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
+DS R K RE+LA AL D+ I + A D + +E +++++ + K
Sbjct: 116 SDSVRLKCREMLAAALRT----GDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKN 168
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
+ RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q
Sbjct: 169 RVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQ 228
Query: 325 RGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 229 MAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 280
Score = 108 (43.1 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 28/124 (22%), Positives = 63/124 (50%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D LK LK+ P+T ++L ST++G + + K E++ +A +L+ WKK++ +T
Sbjct: 4 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPST-- 61
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQV 153
K+ K + T P++ + + + ++ + +T + S S++V++
Sbjct: 62 DKDSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFPRAPSTSDSVRL 121
Query: 154 EKKE 157
+ +E
Sbjct: 122 KCRE 125
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 328 (120.5 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 70/172 (40%), Positives = 101/172 (58%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
+DS R K RE+LA AL D+ I + A D + +E +++++ + K
Sbjct: 137 SDSVRLKCREMLAAALRT----GDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKN 189
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
+ RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q
Sbjct: 190 RVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQ 249
Query: 325 RGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 250 MAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
Score = 108 (43.1 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 28/124 (22%), Positives = 63/124 (50%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D LK LK+ P+T ++L ST++G + + K E++ +A +L+ WKK++ +T
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPST-- 82
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQV 153
K+ K + T P++ + + + ++ + +T + S S++V++
Sbjct: 83 DKDSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFPRAPSTSDSVRL 142
Query: 154 EKKE 157
+ +E
Sbjct: 143 KCRE 146
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 338 (124.0 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 76/198 (38%), Positives = 115/198 (58%)
Query: 184 SVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNAC 238
S +KP T +TP++T I C D+ R+K RE+L AL + D + + +C
Sbjct: 84 SCKKPDPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVAVGVSC 137
Query: 239 DPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTM 298
+ + + E ++ + G G K + RS + N++D KNP LR+ VL G +TP+++ M
Sbjct: 138 EHLSSQIE-EYILLDLSGSQIGY-KNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVM 195
Query: 299 SPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADE 358
+ EEMASDE + + + ++A+ E Q TD F C++C ++ CTY Q+QTRS+DE
Sbjct: 196 TSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDE 255
Query: 359 PMTTYVTCVNCSKRWKFC 376
PMTTYV C C RWKFC
Sbjct: 256 PMTTYVVCNECGNRWKFC 273
Score = 97 (39.2 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 30/106 (28%), Positives = 52/106 (49%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D L+ LK+ P+T +L ST+VG + L K E++ +A +L+ WKK++ +
Sbjct: 1 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL---DVSD 57
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKV 139
K+ G + + T K SG D S K + T+ T ++
Sbjct: 58 GKSRDQGRGTPLPTSSSKDASGTTD----LSCKKPDPPRTSSTPRI 99
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 329 (120.9 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 70/172 (40%), Positives = 101/172 (58%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
+DS R K RE+LA AL E+ I + A D + +E +++++ + K
Sbjct: 136 SDSVRLKCREMLAAAL-----RTGEDYI-AIGA-DEEELGSQIEEAIYQEIRNTDMKYKN 188
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
+ RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q
Sbjct: 189 RVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQ 248
Query: 325 RGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 249 MAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 300
Score = 102 (41.0 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 31/124 (25%), Positives = 63/124 (50%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D LK LK+ P+T ++L ST++G + + K E++ +A +L+ WKK++ +T
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPST-- 82
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQV 153
K+ K + T P++ + S+ K E + +T + S S++V++
Sbjct: 83 DKDSEEKKKDTAITSQNSPEAREESSSGHGSSRKDEP-NARDTYVSSFPRAPSTSDSVRL 141
Query: 154 EKKE 157
+ +E
Sbjct: 142 KCRE 145
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 327 (120.2 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 69/172 (40%), Positives = 101/172 (58%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
+DS R K RE+LA AL D+ + + A D + +E +++++ + K
Sbjct: 137 SDSVRLKCREMLAAALRT----GDDYVA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKN 189
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
+ RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q
Sbjct: 190 RVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQ 249
Query: 325 RGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 250 MAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
Score = 104 (41.7 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 28/124 (22%), Positives = 63/124 (50%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D LK LK+ P+T ++L ST++G + + K E++ +A +L+ WKK++ +T
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPST-- 82
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQV 153
K+ K + T P++ + + + ++ + +T + S S++V++
Sbjct: 83 DKDPEEKKKDTAITSQNSPEAREESSSSGNVSSRKDETNARDTYVSSFPRAPSTSDSVRL 142
Query: 154 EKKE 157
+ +E
Sbjct: 143 KCRE 146
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 327 (120.2 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 69/172 (40%), Positives = 101/172 (58%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
+DS R K RE+LA AL D+ + + A D + +E +++++ + K
Sbjct: 137 SDSVRLKCREMLAAALRT----GDDYVA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKN 189
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
+ RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q
Sbjct: 190 RVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQ 249
Query: 325 RGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 250 MAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
Score = 102 (41.0 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 28/124 (22%), Positives = 62/124 (50%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D LK LK+ P+T ++L ST++G + L K E++ +A +L+ WKK++ +T
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWKKLLDGPST-- 82
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQV 153
K+ K + P++ + + + ++ + +T + S S++V++
Sbjct: 83 DKDPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDETNARDTYVSSFPRAPSTSDSVRL 142
Query: 154 EKKE 157
+ +E
Sbjct: 143 KCRE 146
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 328 (120.5 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 70/172 (40%), Positives = 101/172 (58%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
+DS R K RE+LA AL D+ I + A D + +E +++++ + K
Sbjct: 137 SDSVRLKCREMLAAALRT----GDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKN 189
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
+ RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q
Sbjct: 190 RVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQ 249
Query: 325 RGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 250 MAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
Score = 100 (40.3 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 28/124 (22%), Positives = 63/124 (50%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D LK LK+ P+T ++L ST++G + + K E++ +A +L+ WKK++ +T
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPST-- 82
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQV 153
+K+ K T P++ + + + ++ + +T + S S++V++
Sbjct: 83 EKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRL 142
Query: 154 EKKE 157
+ +E
Sbjct: 143 KCRE 146
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 327 (120.2 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 69/172 (40%), Positives = 101/172 (58%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
+DS R K RE+LA AL D+ + + A D + +E +++++ + K
Sbjct: 137 SDSVRLKCREMLAAALRT----GDDYVA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKN 189
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
+ RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q
Sbjct: 190 RVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQ 249
Query: 325 RGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 250 MAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
Score = 100 (40.3 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 27/124 (21%), Positives = 62/124 (50%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D LK LK+ P+T ++L ST++G + + K E++ +A +L+ WKK++ +T
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPST-- 82
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQV 153
K+ K + P++ + + + ++ + +T + S S++V++
Sbjct: 83 DKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVSSFPRAPSTSDSVRL 142
Query: 154 EKKE 157
+ +E
Sbjct: 143 KCRE 146
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 330 (121.2 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 75/201 (37%), Positives = 117/201 (58%)
Query: 183 PSVRK-PSQGTI-ATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVN 236
P VRK P + +TP++T + C D+ R K RE+L AL + D + +
Sbjct: 110 PGVRKRPELPRMPSTPRITTFPPVPVTC-DAVRTKCREMLTAAL-----QTDHDHVAIGA 163
Query: 237 ACDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERL 295
C+ + + E ++++ +G T + K + RS + N++D KNP LR++VL G +TP+++
Sbjct: 164 DCECLAGQIE-EYILWQGVGFGTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQI 222
Query: 296 VTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRS 355
M+ EEMASDE + + + ++A+ E Q TD F C +C ++ CTY Q+QTRS
Sbjct: 223 AVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRS 282
Query: 356 ADEPMTTYVTCVNCSKRWKFC 376
+DEPMTT+V C C RWKFC
Sbjct: 283 SDEPMTTFVVCNECGNRWKFC 303
Score = 93 (37.8 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIV 86
+D L+ LK+ PVT +L ST+VG + L K E++ +A +L+ WKK++
Sbjct: 28 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLL 80
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 327 (120.2 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 72/197 (36%), Positives = 113/197 (57%)
Query: 183 PSVRKPSQGTI-ATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNA 237
PS ++P + + P++T + C D+ R+K RE+L AL + D + +
Sbjct: 86 PSRKRPELPRVPSAPRITTFPPVPVTC-DAVRNKCREMLTAAL-----QTDHDHMAVGAD 139
Query: 238 CDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVT 297
C+ + + +E +F +G + K + RS + N++D KNPDLR+ VL G +TP+++
Sbjct: 140 CEGL--SAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGVITPQQIAV 197
Query: 298 MSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSAD 357
M+ EEMASDE + + + ++A+ E Q TD F C RC ++ CTY Q+QTRS+D
Sbjct: 198 MTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGRCRRKNCTYTQVQTRSSD 257
Query: 358 EPMTTYVTCVNCSKRWK 374
EPMTT+V C C RWK
Sbjct: 258 EPMTTFVVCNECGNRWK 274
Score = 93 (37.8 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D L+ LK+ PVT +L ST+VG + L K E++ +A +L+ WKK++ +
Sbjct: 4 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 63
Query: 94 KKNGSTG 100
++ G
Sbjct: 64 REQRRAG 70
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 332 (121.9 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 74/190 (38%), Positives = 110/190 (57%)
Query: 188 PSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSV 247
PS + A P L+ ++ DS RDK E+L AL D++ D C+ + +
Sbjct: 229 PSFSSSAGP-LSPRLQTGDSIRDKCIEMLTAAL-----RTDDDYKDYGTNCEAM--GAEI 280
Query: 248 ESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE 307
E ++++ + K + RS + N++D KNP+LRK VL G + R+ +M+ EEMASDE
Sbjct: 281 EDYIYQETKATDMKYKNRVRSRISNLKDPKNPNLRKNVLAGAIELSRIASMTAEEMASDE 340
Query: 308 RQRQIENI-KEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTC 366
+Q+ N+ ++A+ E Q TTD +C +C ++ CTY Q+QTRSADEPMTT+V C
Sbjct: 341 L-KQLRNVLTQEAIREHQMAKTGGTTTDLLQCGKCKKKNCTYNQVQTRSADEPMTTFVLC 399
Query: 367 VNCSKRWKFC 376
C RWKFC
Sbjct: 400 NECGNRWKFC 409
Score = 80 (33.2 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKH-PREKIQIVASNLLDIWKKIVIEETTRN 93
+D L+ LK F +T +L T++G + + KH E + +A L+ WK+++ E+ +N
Sbjct: 27 LDLLRELKDFNMTLKLLQDTRIGMSVNGIRKHCTDEDVVNLAKILIKNWKRLL--ESAQN 84
Query: 94 KKN 96
K+
Sbjct: 85 PKS 87
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 283 (104.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 65/184 (35%), Positives = 106/184 (57%)
Query: 181 QAPSVRKPSQGTIATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVN 236
Q+ + R+ T TPK+T + C D+ R+K RE+L AL +AD++ I
Sbjct: 137 QSSNKRQEPPKTPTTPKITTFPPAPVTC-DAVRNKCREMLTTAL-----QADDDYIAIGA 190
Query: 237 ACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLV 296
C+ +A +E +++ + + K + RS + N++D KNP+L+K VL G +TPE++
Sbjct: 191 DCE--HIAAQIEECIYQDIKNTDMKYKNRVRSRISNLKDSKNPELKKNVLCGAITPEQIA 248
Query: 297 TMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSA 356
M+ EEMAS+E + + + ++A+ E Q TD F C +C ++ CTY Q+QTRS+
Sbjct: 249 VMTSEEMASNELKEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSS 308
Query: 357 DEPM 360
DEPM
Sbjct: 309 DEPM 312
Score = 117 (46.2 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 36/106 (33%), Positives = 55/106 (51%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVI-----E 88
+D LK LKS P+T D+L ST++G + L K E++ +A +L+ WKK++ E
Sbjct: 53 MDLLKELKSMPMTLDLLQSTRIGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDLDASEE 112
Query: 89 ETTRNKKNGSTGDKSSVTTGVVKPDSG-KIDKVQKTSAVKVEKVST 133
++ KKN S SS TG + S K + KT K++T
Sbjct: 113 KSEEKKKNLSLPTSSSKETGNSRDQSSNKRQEPPKTPTTP--KITT 156
>POMBASE|SPAC20H4.03c [details] [associations]
symbol:tfs1 "transcription elongation factor TFIIS"
species:4896 "Schizosaccharomyces pombe" [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 PomBase:SPAC20H4.03c
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
GO:GO:0000991 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006379
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EMBL:U20526 PIR:S63845 RefSeq:NP_593623.1 ProteinModelPortal:P49373
SMR:P49373 STRING:P49373 EnsemblFungi:SPAC20H4.03c.1 GeneID:2541941
KEGG:spo:SPAC20H4.03c OrthoDB:EOG4CC79J NextBio:20803025
Uniprot:P49373
Length = 293
Score = 314 (115.6 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 68/171 (39%), Positives = 101/171 (59%)
Query: 210 DKIRE----LLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAE-KL 264
DKIR L+ NAL + S+ +I I A +++ + + TG+E +
Sbjct: 131 DKIRNNCIGLMYNALV-IDSDESSSLI--------IAKAKEIDAQVLARAAGKTGSEYRN 181
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
+ RS+ N++D+ NP LR VL E+TP+RL TM+ E+AS++R+++ ++++ LF Q
Sbjct: 182 RMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASEDRRKEDAKLEQENLFHAQ 241
Query: 325 RGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375
A TD F C +C Q+K +YYQMQTRSADEPMTT+ C C RWKF
Sbjct: 242 GAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRWKF 292
Score = 79 (32.9 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 29/125 (23%), Positives = 56/125 (44%)
Query: 28 GPEVSRCVDALKRLKSFPV-TYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIV 86
G + ++ + RLK+ V T ++L T++G + L HP EK+ A ++ WK
Sbjct: 19 GKNIETIINIMTRLKNEVVATEELLKETRLGLVVGKLRSHPNEKVGEQAREIVKKWKA-- 76
Query: 87 IEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVS 146
+ ++ + +T SS + S +VQK S+ ++ ++ V V T
Sbjct: 77 --DVSKGRPLKTTTTTSSTPSKHADVGSQAQKQVQKQSS-SGQRTFKSDNVNVNVTDDKI 133
Query: 147 RSETV 151
R+ +
Sbjct: 134 RNNCI 138
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 99/279 (35%), Positives = 149/279 (53%)
Query: 112 PDSGKIDK-VQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAX 170
P + K +K ++ A K EK K E + S R + V+ E K+ DSV + A
Sbjct: 82 PATPKGEKGEERVKAKKKEKGLDCSDWKPETSLSPPRKKRVE-EPKDRR-DSVDSKSSAT 139
Query: 171 XX------XXXXXXXXQAPSVRKPSQGTIAT--PKLTQLIKC---NDSSRDKIRELLANA 219
+A + R PS + T P + L C DS RDK E+L+ A
Sbjct: 140 SSPKRPSMERSNSSKSKAETPRTPSSPSSPTFAPSVCLLAPCYLTGDSVRDKCVEMLSAA 199
Query: 220 LSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKN 278
L +AD++ D CD ++A +E ++++L +ST + + + RS + N++D +N
Sbjct: 200 L-----KADDDYKDYGVNCD--KMASEIEDHIYQEL-KSTDMKYRNRVRSRISNLKDPRN 251
Query: 279 PDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIEN-IKEKALFECQRGGEATATTDQFK 337
P LR+ VL G ++ + M+ EEMASDE R++ N + ++A+ E Q TTD F+
Sbjct: 252 PGLRRNVLSGAISAGLIAKMTAEEMASDEL-RELRNAMTQEAIREHQMAKTGGTTTDLFQ 310
Query: 338 CSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
CS+C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 311 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 349
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 89/264 (33%), Positives = 138/264 (52%)
Query: 117 IDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAXXXXXXX 176
++ V+K S+ + + +K K + SE EKK G+S + +
Sbjct: 52 VNAVRKQSSDEEVQTLAKSLIKAWKK-LLDGSEGKPEEKK---GESPLQSSSSKDCPGSS 107
Query: 177 XXXXQAPSVRKPSQGTIATPKLTQLIKC---NDSSRDKIRELLANALSKVTSEADEEIID 233
+ + + P+ T TPK T DS R K RELL AL ++ D + I
Sbjct: 108 DTSNKPETPKTPT--TPVTPKFTMFPPAPVTTDSVRTKCRELLVAALQ---TDGDHQTIG 162
Query: 234 EVNACDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTP 292
C+ +A +E ++++ +ST + K + RS + N++D+KNPDLR+ VL G ++P
Sbjct: 163 A--DCE--HMAAQIEDYIYQEF-KSTDMKYKTRLRSRISNLKDQKNPDLRRNVLCGNISP 217
Query: 293 ERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQ 352
ER+ +M+ EEMAS E + + + ++++ E Q TD F C +C + CTY Q+Q
Sbjct: 218 ERIASMTAEEMASPELKEIRKALTKESIREHQLSKVGGTETDMFVCGKCKGKNCTYTQVQ 277
Query: 353 TRSADEPMTTYVTCVNCSKRWKFC 376
TRSADEPMTT+V C C RWKFC
Sbjct: 278 TRSADEPMTTFVLCNECGNRWKFC 301
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 82/201 (40%), Positives = 122/201 (60%)
Query: 181 QAPSVRKPSQGTIATPKLTQLIKC---NDSSRDKIRELLANALSKVTSEADEEIIDEVNA 237
+ PS PS T A P + L C DS RDK E+L+ AL +A+++ D
Sbjct: 160 KTPS--SPSTPTFA-PAVCLLASCYLTGDSVRDKCVEMLSAAL-----KAEDDFKDYGVN 211
Query: 238 CDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLV 296
CD ++A +E ++++L +ST + + + RS + N++D +NP LR+ VL G ++PE +
Sbjct: 212 CD--KLASEIEDHIYQEL-KSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGTISPELIA 268
Query: 297 TMSPEEMASDERQRQIEN-IKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRS 355
M+ EEMASDE R++ N + ++A+ E Q TTD +CS+C ++ CTY Q+QTRS
Sbjct: 269 KMTAEEMASDEL-RELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRS 327
Query: 356 ADEPMTTYVTCVNCSKRWKFC 376
ADEPMTT+V C C RWKFC
Sbjct: 328 ADEPMTTFVLCNECGNRWKFC 348
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 80/194 (41%), Positives = 118/194 (60%)
Query: 188 PSQGTIATPKLTQLIKC---NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVA 244
PS T A P + L C DS RDK E+L+ AL +A++ D CD ++A
Sbjct: 164 PSTPTFA-PAVCLLAPCYLTGDSVRDKCVEMLSAAL-----KAEDNFKDYGVNCD--KLA 215
Query: 245 VSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEM 303
+E ++++L +ST + + + RS + N++D +NP LR+ VL G ++PE + M+ EEM
Sbjct: 216 SEIEDHIYQEL-KSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEM 274
Query: 304 ASDERQRQIEN-IKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTT 362
ASDE R++ N + ++A+ E Q TTD +CS+C ++ CTY Q+QTRSADEPMTT
Sbjct: 275 ASDEL-RELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTT 333
Query: 363 YVTCVNCSKRWKFC 376
+V C C RWKFC
Sbjct: 334 FVLCNECGNRWKFC 347
>ASPGD|ASPL0000075205 [details] [associations]
symbol:AN4861 species:162425 "Emericella nidulans"
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0001139 "core RNA
polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0000993 "RNA polymerase II core binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 EMBL:BN001303 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
HOGENOM:HOG000195015 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EnsemblFungi:CADANIAT00005544 Uniprot:C8V9V9
Length = 304
Score = 275 (101.9 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 53/132 (40%), Positives = 82/132 (62%)
Query: 244 AVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEE 302
A +VE+ ++ G T + K RS+ N++++ NP LR RVL EVTPER V M+ EE
Sbjct: 172 AAAVEAAAYDAYGPETKEPYRTKIRSLFQNLKNKSNPTLRVRVLSNEVTPERFVKMTHEE 231
Query: 303 MASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTT 362
+ SDE++ + I+++ + + + + +C +CGQRK TY + QTRSADEPMT
Sbjct: 232 LRSDEQREKDRKIQKENMDKAMVAQAERSISTSLQCGKCGQRKVTYTEAQTRSADEPMTL 291
Query: 363 YVTCVNCSKRWK 374
+ TC++C K W+
Sbjct: 292 FCTCMHCGKSWR 303
Score = 81 (33.6 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 29/126 (23%), Positives = 57/126 (45%)
Query: 35 VDALKRLKS-FPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIVIEETTRN 93
V LK L+ + D+L ST+VG + +H ++ ++S ++ W+ E +
Sbjct: 29 VSLLKELQQGVKASEDLLRSTRVGIIVNKFKQHKAPEVARLSSEIVSKWRN----EVNKQ 84
Query: 94 KKNGSTG--DKSSVT-----TGVVKPDSGK-IDKVQKTSAVKVEKVSTAETVKVEKTGSV 145
K +GS +SS + G P S DK+ K + ++ A+ + + +TG+
Sbjct: 85 KASGSASASQRSSASPRPPQNGTASPASATPSDKMSKLAVPPDKRTWKADGIDINQTGNR 144
Query: 146 SRSETV 151
+R +
Sbjct: 145 ARDNCI 150
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 82/228 (35%), Positives = 117/228 (51%)
Query: 154 EKKETNGDSVMDRGEAXXXXXXXX-XXXQAPSVRKPSQGTIATPKLTQLIKCNDSSRDKI 212
EKK+ S + EA + PS I P + +DS R K
Sbjct: 67 EKKKEPASSSQNSPEAREESSSSSNSSSRKEEGSAPSNSFI--PSFPRAPSTSDSVRVKC 124
Query: 213 RELLANALSK----VTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRS 268
RE+L+ AL + ADEE ++ ++ PI F++L + K + RS
Sbjct: 125 REMLSAALRTGDDYIAIGADEEELETIHT--PI----------FQELKNTDMKYKNRVRS 172
Query: 269 IMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGE 328
+ N++D KNP+LRK VL G + P++ M+ EEMASDE + +N+ ++A+ E Q
Sbjct: 173 RIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAIREHQMAKT 232
Query: 329 ATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 233 GGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 280
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 97/279 (34%), Positives = 148/279 (53%)
Query: 112 PDSGKIDK-VQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAX 170
P + K +K ++ A K EK K E + S R + V+ E K+ DSV + A
Sbjct: 82 PATPKGEKGEERVKAKKKEKGLDCSDWKPETSLSPPRKKRVE-EPKDRR-DSVDSKSSAT 139
Query: 171 XX------XXXXXXXXQAPSVRKPSQGTIAT--PKLTQLIKC---NDSSRDKIRELLANA 219
+A + R PS + T P + L C DS RDK E+L+ A
Sbjct: 140 SSPKRPSMERSNSSKSKAETPRTPSSPSSPTFAPSVCLLAPCYLTGDSVRDKCVEMLSAA 199
Query: 220 LSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKN 278
L +AD++ D CD ++A +E ++++L +ST + + + RS + N++D +N
Sbjct: 200 L-----KADDDYKDYGVNCD--KMASEIEDHIYQEL-KSTDMKYRNRVRSRISNLKDPRN 251
Query: 279 PDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIEN-IKEKALFECQRGGEATATTDQFK 337
P LR+ VL G ++ + M+ EEMASDE R++ N + ++A+ E Q TTD F+
Sbjct: 252 PGLRRNVLSGAISAGLIAKMTAEEMASDEL-RELRNAMTQEAIREHQMAKTGGTTTDLFQ 310
Query: 338 CSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
CS+C ++ CTY Q+QTR+ DEPMTT+V C C RWKFC
Sbjct: 311 CSKCKKKNCTYNQVQTRT-DEPMTTFVLCNECGNRWKFC 348
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 97/279 (34%), Positives = 141/279 (50%)
Query: 112 PDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAXX 171
P K +K ++ K EK K E S R + + E KE DSV + A
Sbjct: 82 PGPPKGEKGEERDKAKKEKGLDCSNWKPETGLSPPRKKRAE-EPKERR-DSVDSKSSATS 139
Query: 172 X--------XXXXXXXXQAPSV-RKPSQGTIATPKLTQLIKC---NDSSRDKIRELLANA 219
+ P PS T A P + L C DS RDK E+L+ A
Sbjct: 140 SPKRPSMERSNSGKSKAETPKTPTSPSTPTFA-PSVCLLAPCYLTGDSVRDKCVEMLSAA 198
Query: 220 LSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKN 278
L +A+++ D CD ++A +E + E+L +ST + + + RS + N++D +N
Sbjct: 199 L-----KAEDDYKDYGVNCD--KMASEIEDHILEEL-KSTDMKYRNRVRSRISNLKDPRN 250
Query: 279 PDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIEN-IKEKALFECQRGGEATATTDQFK 337
P LR+ VL G ++ + M+ EEMASDE R++ N + ++A+ E Q TTD F+
Sbjct: 251 PSLRRNVLSGAISAGLIAKMTAEEMASDEL-RELRNAMTQEAIREHQMAKTGGTTTDLFQ 309
Query: 338 CSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
CS+C ++ CTY Q+QTRSADEPMTT+V C C RWK C
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKVC 348
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 96/278 (34%), Positives = 143/278 (51%)
Query: 112 PDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAXX 171
P G+ + ++ A K EK K E S R + E +T DSV + A
Sbjct: 84 PPKGEKGE-EREKAKKKEKGLECSDWKPEAGLSPPRKKR---EDPKTRRDSVDSKSSASS 139
Query: 172 X------XXXXXXXXQAPSVRKPSQGTIAT--PKLTQLIKC---NDSSRDKIRELLANAL 220
+A S + PS T + L C DS RDK E+L+ AL
Sbjct: 140 SPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAAL 199
Query: 221 SKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNP 279
+AD++ D CD ++A +E ++++L +ST + + + RS + N++D +NP
Sbjct: 200 -----KADDDYKDYGVNCD--KMASEIEDHIYQEL-KSTDMKYRNRVRSRISNLKDPRNP 251
Query: 280 DLRKRVLLGEVTPERLVTMSPEEMASDERQRQIEN-IKEKALFECQRGGEATATTDQFKC 338
LR+ VL G ++ + M+ EEMASDE R++ N + ++A+ E Q TTD F+C
Sbjct: 252 GLRRNVLSGAISAGLIAKMTAEEMASDEL-RELRNAMTQEAIREHQMAKTGGTTTDLFQC 310
Query: 339 SRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
S+C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 311 SKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 83/228 (36%), Positives = 119/228 (52%)
Query: 154 EKKETNGDSVMDRGEAXXXXXXXX-XXXQAPSVRKPSQGTIATPKLTQLIKCNDSSRDKI 212
EKK+ S + EA + PS I P + +DS R K
Sbjct: 92 EKKKEPASSSQNSPEAREESSSSSNSSSRKEEGSAPSNSFI--PSFPRAPSTSDSVRVKC 149
Query: 213 RELLANALSK----VTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRS 268
RE+L+ AL + ADEE E+ + I A ++ +F++L + K + RS
Sbjct: 150 REMLSAALRTGDDYIAIGADEE---ELGS--QIEEA---KAPIFQELKNTDMKYKNRVRS 201
Query: 269 IMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGE 328
+ N++D KNP+LRK VL G + P++ M+ EEMASDE + +N+ ++A+ E Q
Sbjct: 202 RIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAIREHQMAKT 261
Query: 329 ATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 262 GGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 309
>GENEDB_PFALCIPARUM|PF07_0057 [details] [associations]
symbol:PF07_0057 "transcription elongation
factor s-ii, putative" species:5833 "Plasmodium falciparum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008023 "transcription elongation
factor complex" evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 265 (98.3 bits), Expect = 8.8e-30, Sum P(2) = 8.8e-30
Identities = 60/179 (33%), Positives = 101/179 (56%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPI-RVAVSVESVMFEKLGRSTGAE- 262
ND RDK ++ L A +S+ I++ D I + + V EK RS+ E
Sbjct: 227 NDMHRDKAKQFLFKAFVVGSSDNLLYFIEKKKLNDIIYNIECELYKVYMEK--RSSQKEY 284
Query: 263 KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFE 322
++ +SI FN+ D+KNP+ ++V ++ + L TM+ ++MASDE++ + + +++L
Sbjct: 285 NMQLKSIKFNLSDKKNPNFNEKVYSEFISSKALATMNSQDMASDEKKNERKKCLQESLLA 344
Query: 323 CQRGGEAT------ATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375
CQ + + +F+C +C Y+Q+QTRS+DEPMTT+VTC+ C+ RWKF
Sbjct: 345 CQSDWDVKNILLKKSRKGEFQCFKCKGYDTIYHQLQTRSSDEPMTTFVTCLKCNNRWKF 403
Score = 82 (33.9 bits), Expect = 8.8e-30, Sum P(2) = 8.8e-30
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 31 VSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIVIEET 90
+ + L LK + D+L T++G + LTK E +Q ++ +L++ WK I E
Sbjct: 40 IKEVITNLNLLKDVEINKDILRITKIGITVNKLTKINNELVQNLSKDLVEKWKNIAKMEK 99
Query: 91 TRNKKN 96
+ KN
Sbjct: 100 LSSLKN 105
>UNIPROTKB|Q8IBV2 [details] [associations]
symbol:PF07_0057 "Transcription elongation factor s-II,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0008023 "transcription elongation factor complex"
evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 265 (98.3 bits), Expect = 8.8e-30, Sum P(2) = 8.8e-30
Identities = 60/179 (33%), Positives = 101/179 (56%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPI-RVAVSVESVMFEKLGRSTGAE- 262
ND RDK ++ L A +S+ I++ D I + + V EK RS+ E
Sbjct: 227 NDMHRDKAKQFLFKAFVVGSSDNLLYFIEKKKLNDIIYNIECELYKVYMEK--RSSQKEY 284
Query: 263 KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFE 322
++ +SI FN+ D+KNP+ ++V ++ + L TM+ ++MASDE++ + + +++L
Sbjct: 285 NMQLKSIKFNLSDKKNPNFNEKVYSEFISSKALATMNSQDMASDEKKNERKKCLQESLLA 344
Query: 323 CQRGGEAT------ATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375
CQ + + +F+C +C Y+Q+QTRS+DEPMTT+VTC+ C+ RWKF
Sbjct: 345 CQSDWDVKNILLKKSRKGEFQCFKCKGYDTIYHQLQTRSSDEPMTTFVTCLKCNNRWKF 403
Score = 82 (33.9 bits), Expect = 8.8e-30, Sum P(2) = 8.8e-30
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 31 VSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIVIEET 90
+ + L LK + D+L T++G + LTK E +Q ++ +L++ WK I E
Sbjct: 40 IKEVITNLNLLKDVEINKDILRITKIGITVNKLTKINNELVQNLSKDLVEKWKNIAKMEK 99
Query: 91 TRNKKN 96
+ KN
Sbjct: 100 LSSLKN 105
>CGD|CAL0002729 [details] [associations]
symbol:orf19.4537 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0001139 "core RNA polymerase II
recruiting transcription factor activity" evidence=IEA] [GO:0000993
"RNA polymerase II core binding" evidence=IEA] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 CGD:CAL0002729 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
KO:K03145 TIGRFAMs:TIGR01385 EMBL:AACQ01000143 EMBL:AACQ01000140
RefSeq:XP_712868.1 RefSeq:XP_712962.1 ProteinModelPortal:Q59T94
SMR:Q59T94 STRING:Q59T94 GeneID:3645430 GeneID:3645524
KEGG:cal:CaO19.12012 KEGG:cal:CaO19.4537 Uniprot:Q59T94
Length = 305
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 81/274 (29%), Positives = 136/274 (49%)
Query: 110 VKPDSGKIDKVQKTSAV-KVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVM---D 165
VKP + + + AV K +AE + K + + VQ EK ++
Sbjct: 33 VKPSEKLLRETKVGVAVNKFRSHDSAEINGLVKKMIRNWRDAVQAEKNNKKKLAIAAGTG 92
Query: 166 RGEAXXXXXXXXXXXQAPSVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTS 225
G + KPS+ T TP + N + +L N +
Sbjct: 93 TGTPSSSAISPSSSGSGSTTPKPSEST--TPSAARKGPRNPKTDGVNTQLYENDTRNASV 150
Query: 226 EA--DEEIIDEVNACDPI-RVAVSVESVMFE-KLGRSTGAEKLKYRSIMFNIRDEKNPDL 281
A +D ++ I R+A+ +E+ +++ + + + + + + RS N+R++KNP+L
Sbjct: 151 SALYTSLAVDRDDSPKHILRIAIEIEAEVYKSEYSKVSDSYRNRLRSFTMNLRNKKNPEL 210
Query: 282 RKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRC 341
R+R+L ++ P + M+P EMA + +++IE + ++ LF+ Q E A TD+F C +C
Sbjct: 211 RERILSKQILPAAFIKMTPNEMAPEALKKEIEKLHKQNLFDAQGATEKRAVTDRFTCGKC 270
Query: 342 GQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375
+K +YYQMQTRSADEP+TT+ TC NC RWKF
Sbjct: 271 KHKKVSYYQMQTRSADEPLTTFCTCENCGNRWKF 304
>TAIR|locus:2052351 [details] [associations]
symbol:AT2G42730 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001810 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF00646 Pfam:PF07500
PROSITE:PS50181 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 SUPFAM:SSF81383 InterPro:IPR006566
SMART:SM00579 Gene3D:1.10.472.30 SUPFAM:SSF46942 InterPro:IPR027191
PANTHER:PTHR32555 InterPro:IPR013101 Pfam:PF07723 IPI:IPI00519130
RefSeq:NP_181801.1 UniGene:At.36975 ProteinModelPortal:F4IP72
SMR:F4IP72 PRIDE:F4IP72 EnsemblPlants:AT2G42730.1 GeneID:818873
KEGG:ath:AT2G42730 Uniprot:F4IP72
Length = 737
Score = 335 (123.0 bits), Expect = 2.0e-29, P = 2.0e-29
Identities = 69/131 (52%), Positives = 90/131 (68%)
Query: 193 IATPKLTQLIKCNDSSRDKIRELLANALSKVTSE-ADEEIIDEVNACDPIRVAVSVESVM 251
+ P + + K DS RDK+RE+L +L KV SE D E+ V ACDP VAVSVES M
Sbjct: 591 VKIPTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAM 650
Query: 252 FEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQ 311
FEKLG G K KYRSI+FN+ D NPDLR++VL+GE+ ERLVTM +EM S++ Q++
Sbjct: 651 FEKLGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKE 710
Query: 312 IENIKEKALFE 322
++ IKE A F+
Sbjct: 711 VQRIKENARFK 721
Score = 123 (48.4 bits), Expect = 0.00022, P = 0.00022
Identities = 46/158 (29%), Positives = 65/158 (41%)
Query: 2 EQELVELFXXXXXXXXXXXIDGVSSGGPEVSRCVDALKRLKSFPVTY--DVLVSTQVGKR 59
+QE +EL+ + GV + +VSR VDA RLK P + +V+ T +GK
Sbjct: 493 KQEFLELYEAALRAAKS--VKGVKNSS-KVSRFVDARNRLKDAPTSLACEVVSKTSMGKG 549
Query: 60 LRPLTKHPREKIQIVASNLLDIWKKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDK 119
L L H I+ L D+W KI+ + T K + + K K DK
Sbjct: 550 LSFLNDHKNPHIRSEGRLLRDLWMKILYASGREKSHDRETQVKIPTHSTMKKTGDSKRDK 609
Query: 120 VQK---TSAVKVEKVSTAETVKVEKTGSVSRSETVQVE 154
V++ TS VKV +K T V VE
Sbjct: 610 VREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVE 647
>SGD|S000003011 [details] [associations]
symbol:DST1 "General transcription elongation factor TFIIS,
enables RNA polymerase" species:4932 "Saccharomyces cerevisiae"
[GO:0000993 "RNA polymerase II core binding" evidence=IPI]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP;IDA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IMP] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IGI;IDA;IMP] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IDA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001193 "maintenance of transcriptional
fidelity during DNA-dependent transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0031440 "regulation
of mRNA 3'-end processing" evidence=IGI;IMP] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 SGD:S000003011 GO:GO:0005634 EMBL:BK006941
GO:GO:0046872 GO:GO:0008270 GO:GO:0001012 GO:GO:0045899
GO:GO:0032968 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006362
GO:GO:0006379 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0031440
GO:GO:0001139 GO:GO:0031564 eggNOG:COG1594 PDB:1PQV PDB:1Y1V
PDB:1Y1Y PDB:3GTM PDB:3PO3 PDBsum:1PQV PDBsum:1Y1V PDBsum:1Y1Y
PDBsum:3GTM PDBsum:3PO3 GO:GO:0042797 GO:GO:0001193
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OrthoDB:EOG4CC79J EMBL:M36724
EMBL:D12478 EMBL:M60770 EMBL:Z72565 EMBL:X00047 PIR:A42921
RefSeq:NP_011472.1 PDB:1ENW PDB:1EO0 PDBsum:1ENW PDBsum:1EO0
ProteinModelPortal:P07273 SMR:P07273 DIP:DIP-2307N IntAct:P07273
MINT:MINT-1167083 STRING:P07273 PaxDb:P07273 PeptideAtlas:P07273
EnsemblFungi:YGL043W GeneID:852839 KEGG:sce:YGL043W CYGD:YGL043w
OMA:ESEHPPQ EvolutionaryTrace:P07273 NextBio:972417
Genevestigator:P07273 GermOnline:YGL043W Uniprot:P07273
Length = 309
Score = 282 (104.3 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 58/167 (34%), Positives = 94/167 (56%)
Query: 211 KIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVM--FEKLGRSTGAEKLKYRS 268
K+R+ + AL V ++ E + + A ++ES M + A K +YR
Sbjct: 147 KLRDQVLKALYDVLAKESEHPPQSI-----LHTAKAIESEMNKVNNCDTNEAAYKARYRI 201
Query: 269 IMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGE 328
I N+ + NPDL+ ++ G++TPE L T +++A +++IE I ++ L+ Q
Sbjct: 202 IYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGATI 261
Query: 329 ATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375
+ TD+F C +C ++K +YYQ+QTRSADEP+TT+ TC C RWKF
Sbjct: 262 ERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKF 308
Score = 58 (25.5 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 23/100 (23%), Positives = 43/100 (43%)
Query: 42 KSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIVIEETTRNKKN----- 96
K F T +L T+VG + K +I + ++ WK I + R+++
Sbjct: 32 KEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD-AINKNKRSRQAQQHHQ 90
Query: 97 ----GSTGDKSSV---TTGVVKPDSGKIDKVQKTSAVKVE 129
G+ DK++V GV +P S + D +++ V +
Sbjct: 91 DHAPGNAEDKTTVGESVNGVQQPASSQSDAMKQDKYVSTK 130
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 236 (88.1 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 57/173 (32%), Positives = 95/173 (54%)
Query: 183 PSVRKPSQGTI-ATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNA 237
PS ++P +TP++T + C D+ R+K RE+L AL + D + +
Sbjct: 82 PSRKRPELPRAPSTPRITTFPPVPVTC-DAVRNKCREMLTAAL-----QTDHDHVAIGAD 135
Query: 238 CDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVT 297
C+ R++ +E +F +G + K + RS + N++D KNPDLR+ VL G +TP+++
Sbjct: 136 CE--RLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAV 193
Query: 298 MSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQ 350
M+ EEMASDE + + + ++A+ E Q TD F C +C ++ CTY Q
Sbjct: 194 MTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQ 246
Score = 95 (38.5 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D L+ LK+ P+T +L ST+VG + L K E++ +A +L+ WKK++ +
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 60
Query: 94 KKNG 97
++ G
Sbjct: 61 RERG 64
>WB|WBGene00012000 [details] [associations]
symbol:T24H10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:Z54216 PIR:T25250
RefSeq:NP_495941.1 UniGene:Cel.14290 ProteinModelPortal:P52652
SMR:P52652 STRING:P52652 PaxDb:P52652 EnsemblMetazoa:T24H10.1
GeneID:174450 KEGG:cel:CELE_T24H10.1 UCSC:T24H10.1 CTD:174450
WormBase:T24H10.1 InParanoid:P52652 OMA:KTNIGIK NextBio:884086
Uniprot:P52652
Length = 308
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 69/173 (39%), Positives = 100/173 (57%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAE-K 263
ND +R K +LL +AL + + +D P +AV +E ++ + R T
Sbjct: 145 NDETRLKSAQLLLSALR--FGDMPQGTLD------PEELAVQIEEKLYS-VHRDTNKSYS 195
Query: 264 LKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFEC 323
RS +FN+RD+KN LR+ VL G V E+ TM+ EEMAS E + + ++A+ E
Sbjct: 196 AAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATMTSEEMASAEIREMRDKFTKEAILEH 255
Query: 324 QRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
Q + +D FKC +CG++ CTY Q+QTRS+DEPMTT+V C+ C RWKFC
Sbjct: 256 QMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWKFC 308
>TAIR|locus:2124097 [details] [associations]
symbol:AT4G18720 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF07500 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00509 SMART:SM00510 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 EMBL:AL161549 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 EMBL:AL035526
UniGene:At.22875 HOGENOM:HOG000195015 KO:K03145 IPI:IPI00529744
PIR:T04864 RefSeq:NP_193607.1 ProteinModelPortal:Q9SN41 SMR:Q9SN41
EnsemblPlants:AT4G18720.1 GeneID:827606 KEGG:ath:AT4G18720
TAIR:At4g18720 eggNOG:KOG1105 InParanoid:Q9SN41 PhylomeDB:Q9SN41
ProtClustDB:CLSN2685449 ArrayExpress:Q9SN41 Genevestigator:Q9SN41
Uniprot:Q9SN41
Length = 266
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 63/121 (52%), Positives = 79/121 (65%)
Query: 186 RKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEA-DEEIIDEVNACDPIRVA 244
R + + P + K DS RDK+RE+L +L+KV SE D E+ V ACDP VA
Sbjct: 95 RDNREAAVKIPTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVA 154
Query: 245 VSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMA 304
VSVE+ MFE LG G +K KYRSI+FN+ D NPDLR++VLLGE++ ERLV M EEM
Sbjct: 155 VSVETAMFENLGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMG 214
Query: 305 S 305
S
Sbjct: 215 S 215
Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 43/145 (29%), Positives = 63/145 (43%)
Query: 2 EQELVELFXXXXXXXXXXXIDGVSSGGPEVSRCVDALKRLKSFP--VTYDVLVSTQVGKR 59
++E +ELF + G PEVSR VDA+ RLK P + DV+ T +G+
Sbjct: 3 KREFMELFEAALRAAKS--VKG-DENSPEVSRFVDAMNRLKEAPKSLVCDVVCKTSMGQG 59
Query: 60 LRPLTKHPREKIQIVASNLLDIWKKIVIEE-TTRNKKNGSTGDKSSVTTGVVKPDSGKID 118
L H KI+ L D+W K +++ N K + K K D
Sbjct: 60 LEFFIDHKNPKIRSEGRILRDLWMKFFYASGREKSRDNREAAVKIPTHATMKKTGDSKRD 119
Query: 119 KVQKTSAVKVEKVSTAETVKVE-KT 142
KV++ + KV++ E V E KT
Sbjct: 120 KVREILQTSLAKVAS-EVVDTEMKT 143
>UNIPROTKB|F1LV22 [details] [associations]
symbol:F1LV22 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 IPI:IPI00199082
Ensembl:ENSRNOT00000010872 Uniprot:F1LV22
Length = 280
Score = 227 (85.0 bits), Expect = 4.0e-25, Sum P(2) = 4.0e-25
Identities = 65/176 (36%), Positives = 94/176 (53%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
+DS R K RE LA AL D+ + + A D + +E +++++ + K
Sbjct: 125 SDSVRLKCRETLAAALRT----GDDYVA--IGA-DEEELGSQIEEAIYKEIRNTDKKYKS 177
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQ 324
R+ + NI+D KNP+ VL G+++P+ M EEMASDE ++ KEK
Sbjct: 178 PERTRISNIKDAKNPN---NVLCGKISPDLFARMRAEEMASDELKKD----KEKPDQRSH 230
Query: 325 RGGEATAT----TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
+G T T TD F C +C ++ CTY Q+QTRSADE MTT+ C+ RWKFC
Sbjct: 231 QGVSETKTSGTQTDWF-CGKC-KKNCTYTQVQTRSADEQMTTFA----CANRWKFC 280
Score = 76 (31.8 bits), Expect = 4.0e-25, Sum P(2) = 4.0e-25
Identities = 27/107 (25%), Positives = 51/107 (47%)
Query: 36 DALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRNK 94
D K LK+ + ++L ST+ GK + + K E++ +A +L+ WK ++ E +T
Sbjct: 29 DMPKELKNICMPLELLQSTRFGKSVNAILKQSTDEEVISLAKSLIKSWKILLDEPSTGKD 88
Query: 95 KNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKV-STAETVKVE 140
SS K ++ D T A V + ST+++V+++
Sbjct: 89 PEAREESCSSSNISTSKDETSTRD----TYASSVPRAPSTSDSVRLK 131
>DICTYBASE|DDB_G0278241 [details] [associations]
symbol:tcea1 "RNA polymerase II elongation factor"
species:44689 "Dictyostelium discoideum" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 dictyBase:DDB_G0278241 GO:GO:0005654
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000023 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 KO:K03145
RefSeq:XP_642233.1 HSSP:P23193 ProteinModelPortal:Q54YG9 SMR:Q54YG9
STRING:Q54YG9 EnsemblProtists:DDB0216299 GeneID:8621441
KEGG:ddi:DDB_G0278241 OMA:LEIWKKV Uniprot:Q54YG9
Length = 319
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 83/267 (31%), Positives = 130/267 (48%)
Query: 113 DSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAXXX 172
D K D ++ TSA S++ + T + + S + +++K + D+ DR
Sbjct: 69 DKWKQD-IEGTSATTTSSSSSSSSSTTSTTTTKTASPSESLKRKSISEDT-SDR-PTSKP 125
Query: 173 XXXXXXXXQAPSVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEII 232
P+ K S IA+ + + N R+K +L AL T++ DE +
Sbjct: 126 LLQENKKISPPTTPKTSSPPIAS-LIAPITGANADLRNKTIQLFVEAL---TTDNDETM- 180
Query: 233 DEVNACDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRVLLGEVT 291
P +AV +E+ M++ + R E K K RS FN++ KN LR +L +++
Sbjct: 181 -----SPPEDIAVEIEAEMYD-IYRGVSKEYKEKLRSFKFNLK--KNDILRLSLLNRQIS 232
Query: 292 PERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQM 351
+ +M MASD+ + + + + + G ATTDQF+C +C QRKCTY Q+
Sbjct: 233 VAKFCSMDIYSMASDDLKEERKKLDKFNTEASMLGQNNEATTDQFQCGKCKQRKCTYTQL 292
Query: 352 QTRSADEPMTTYVTCV--NCSKRWKFC 376
QTRSADEP TT+V C C RW+FC
Sbjct: 293 QTRSADEPPTTFVKCCVKGCGNRWRFC 319
>FB|FBgn0030663 [details] [associations]
symbol:CG8117 species:7227 "Drosophila melanogaster"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017890 Pfam:PF01096 Pfam:PF07500 PIRSF:PIRSF006704
PROSITE:PS51133 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0022008 EMBL:AE014298 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003676 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0032784 eggNOG:COG1594 KO:K03145 HSSP:P23193
GeneTree:ENSGT00390000017794 EMBL:BT022128 EMBL:BT023150
RefSeq:NP_573049.2 UniGene:Dm.26636 SMR:Q9VXS6 IntAct:Q9VXS6
MINT:MINT-861025 STRING:Q9VXS6 EnsemblMetazoa:FBtr0074050
GeneID:32499 KEGG:dme:Dmel_CG8117 UCSC:CG8117-RA
FlyBase:FBgn0030663 InParanoid:Q9VXS6 OMA:PEELGSN OrthoDB:EOG4WSTSW
GenomeRNAi:32499 NextBio:778778 Uniprot:Q9VXS6
Length = 162
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 63/167 (37%), Positives = 89/167 (53%)
Query: 209 RDKIRELLANALSKVTSEADEEIIDEVNAC-DPIRVAVSVESVMFEKLGRSTGAEKLKYR 267
R K RE+LA AL C DP +A +E ++ L K + R
Sbjct: 6 RIKCREMLATALKSGNMPP---------GCGDPDDMAAKLEDAIYGDLNGCKVKYKNRIR 56
Query: 268 SIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGG 327
S + N+RD KNP+LR++ LLG++TPE L M+PEEMASD+ ++ + + ++ Q
Sbjct: 57 SRLANLRDPKNPELRQKFLLGQITPEELSKMTPEEMASDDMKQMRQKYVQDSINAAQMAK 116
Query: 328 EATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
TDQFKC RC +R C+ Q+ R DEP+ T+V C C RWK
Sbjct: 117 VQGTKTDQFKCERCDKRNCS--QLHIRDGDEPIITFVICDECGNRWK 161
>TAIR|locus:504954948 [details] [associations]
symbol:AT5G42325 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
KO:K03145 IPI:IPI00542827 RefSeq:NP_680377.1 UniGene:At.65714
ProteinModelPortal:F4K1I5 SMR:F4K1I5 PRIDE:F4K1I5
EnsemblPlants:AT5G42325.1 GeneID:834238 KEGG:ath:AT5G42325
OMA:SADMIMT PhylomeDB:F4K1I5 Uniprot:F4K1I5
Length = 233
Score = 229 (85.7 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 55/132 (41%), Positives = 81/132 (61%)
Query: 193 IATPKLTQLIKCNDSSRDKIRELLANALSKVTSEA-DEEIIDEV-NACDPIRVAVSVESV 250
+ P + + K DS RDK+ E+L ++L+KV +E D E+ V CDP VAVSVES
Sbjct: 101 VKIPTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESA 160
Query: 251 MFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQR 310
M SI+FN+ D NPDLR++VL+GE++ ERLV M +EM S++ Q+
Sbjct: 161 M----------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQK 204
Query: 311 QIENIKEKALFE 322
+++ IKE+A F+
Sbjct: 205 EVQRIKERARFK 216
Score = 133 (51.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 44/140 (31%), Positives = 60/140 (42%)
Query: 3 QELVELFXXXXXXXXXXXIDGVSSGGPEVSRCVDALKRLKSFP--VTYDVLVSTQVGKRL 60
+E +ELF + G S PEV R VDA+ RLK P + DV+ T +GK L
Sbjct: 4 REFLELFEAALRAAKS--VKGAESS-PEVLRFVDAMNRLKEAPKSLVCDVVCKTSMGKGL 60
Query: 61 RPLTKHPREKIQIVASNLLDIWKKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKV 120
H KI+ L D+W KI ++ T K + + K K DKV
Sbjct: 61 GFFIDHKNPKIRSEGRILRDLWMKIHYASGREKSRDRETPVKIPTHSTMKKTGDSKRDKV 120
Query: 121 QKTSAVKVEKVSTAETVKVE 140
+ + KV+T E V E
Sbjct: 121 HEILQSSLAKVAT-EVVDTE 139
>UNIPROTKB|B7Z4S1 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] InterPro:IPR001222 InterPro:IPR017923 Pfam:PF01096
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003746
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:AC100821 UniGene:Hs.491745
HGNC:HGNC:11612 EMBL:AK297729 IPI:IPI00922871 SMR:B7Z4S1
STRING:B7Z4S1 Ensembl:ENST00000522635 UCSC:uc011ldw.2
Uniprot:B7Z4S1
Length = 117
Score = 214 (80.4 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 301 EEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPM 360
+EMASDE + +N+ ++A+ E Q TD F C +C ++ CTY Q+QTRSADEPM
Sbjct: 42 QEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPM 101
Query: 361 TTYVTCVNCSKRWKFC 376
TT+V C C RWKFC
Sbjct: 102 TTFVVCNECGNRWKFC 117
>UNIPROTKB|G5E5M1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:DAAA02024858
EMBL:DAAA02024859 UniGene:Bt.20639 Ensembl:ENSBTAT00000025476
NextBio:20873627 Uniprot:G5E5M1
Length = 2025
Score = 203 (76.5 bits), Expect = 9.3e-13, P = 9.3e-13
Identities = 69/242 (28%), Positives = 114/242 (47%)
Query: 70 KIQIVASNLLDIWKKIVI-EETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKV 128
K++I + + ++K+ + + TT N K D ++K +SG+ ++
Sbjct: 780 KVEIHSEDKAMEYEKLGLPKHTTTNDKTKYVDDTVKHKVKILKRESGEGKNSSDCRDSEI 839
Query: 129 EKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAXXXXXXXXXXXQAPSVRKP 188
+K A K+ + RS + EK +V+ GE Q +K
Sbjct: 840 KKWQLAPFRKMGQPVLPRRSSEEKSEKMTKESTTVICTGEKASKPGAHEK--QEIKKKKT 897
Query: 189 SQGT--IATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVS 246
+G + P + D R +R L + L K ++++ ++ +E A +VA
Sbjct: 898 EKGLPGVHPPAVPASKPSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATK 953
Query: 247 VESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMAS 305
+E +F R T A+ K KYRS+MFN++D KN L K+VL GEVTP+ L+ MSPEE+AS
Sbjct: 954 IEKELFSFF-RDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS 1012
Query: 306 DE 307
E
Sbjct: 1013 KE 1014
>UNIPROTKB|I3L6H4 [details] [associations]
symbol:I3L6H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000029692 Uniprot:I3L6H4
Length = 111
Score = 172 (65.6 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 39/105 (37%), Positives = 67/105 (63%)
Query: 249 SVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE 307
S ++++L +ST + + + RS + N++D +NP LR+ VL G ++ + M+ EEMASDE
Sbjct: 9 SHIYQEL-KSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDE 67
Query: 308 RQRQIEN-IKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQM 351
R++ N + ++A+ E Q TTD F+CS+C ++ CTY Q+
Sbjct: 68 L-RELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQV 111
>UNIPROTKB|E7ER40 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00966918
ProteinModelPortal:E7ER40 SMR:E7ER40 Ensembl:ENST00000515594
ArrayExpress:E7ER40 Bgee:E7ER40 Uniprot:E7ER40
Length = 861
Score = 193 (73.0 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 65/227 (28%), Positives = 105/227 (46%)
Query: 83 KKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKT 142
+K+ + + T N + D ++K +SG+ +++K A K+ +
Sbjct: 72 EKLGLSKHTTNDRTKYIDDTVKHKVKILKRESGEGRNSSDCRDNEIKKWQLAPLRKMGQP 131
Query: 143 GSVSRSETVQVEKKETNGDSVMDRGEAXXXXXXXXXXXQAPSVRKPSQGTIATPKLTQLI 202
RS + EK +V GE Q +K +G +
Sbjct: 132 VLPRRSSEEKSEKIPKESTTVTCTGEKASKPGTHEK--QEMKKKKVEKGVLNVHPAASAS 189
Query: 203 KCN-DSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGA 261
K + D R +R L + L K ++++ ++ +E A +VA +E +F R T A
Sbjct: 190 KPSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATKIEKELFSFF-RDTDA 244
Query: 262 E-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE 307
+ K KYRS+MFN++D KN L K+VL GEVTP+ L+ MSPEE+AS E
Sbjct: 245 KYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKE 291
>UNIPROTKB|E7EVH3 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00984758
ProteinModelPortal:E7EVH3 SMR:E7EVH3 Ensembl:ENST00000506783
ArrayExpress:E7EVH3 Bgee:E7EVH3 Uniprot:E7EVH3
Length = 1072
Score = 193 (73.0 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 65/227 (28%), Positives = 105/227 (46%)
Query: 83 KKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKT 142
+K+ + + T N + D ++K +SG+ +++K A K+ +
Sbjct: 617 EKLGLSKHTTNDRTKYIDDTVKHKVKILKRESGEGRNSSDCRDNEIKKWQLAPLRKMGQP 676
Query: 143 GSVSRSETVQVEKKETNGDSVMDRGEAXXXXXXXXXXXQAPSVRKPSQGTIATPKLTQLI 202
RS + EK +V GE Q +K +G +
Sbjct: 677 VLPRRSSEEKSEKIPKESTTVTCTGEKASKPGTHEK--QEMKKKKVEKGVLNVHPAASAS 734
Query: 203 KCN-DSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGA 261
K + D R +R L + L K ++++ ++ +E A +VA +E +F R T A
Sbjct: 735 KPSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATKIEKELFSFF-RDTDA 789
Query: 262 E-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE 307
+ K KYRS+MFN++D KN L K+VL GEVTP+ L+ MSPEE+AS E
Sbjct: 790 KYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKE 836
>UNIPROTKB|Q92576 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=NAS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0007275
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
eggNOG:NOG255142 EMBL:AL050329 EMBL:AL354719 EMBL:AF091622
EMBL:D87685 EMBL:BX648268 EMBL:BC113650 EMBL:BC113652
IPI:IPI00170770 IPI:IPI00847550 RefSeq:NP_055968.1
UniGene:Hs.348921 PDB:2DME PDBsum:2DME ProteinModelPortal:Q92576
SMR:Q92576 IntAct:Q92576 STRING:Q92576 PhosphoSite:Q92576
DMDM:34098662 PaxDb:Q92576 PeptideAtlas:Q92576 PRIDE:Q92576
Ensembl:ENST00000262043 Ensembl:ENST00000393387 GeneID:23469
KEGG:hsa:23469 UCSC:uc003pen.2 CTD:23469 GeneCards:GC06P064403
HGNC:HGNC:8921 HPA:HPA024676 HPA:HPA025763 MIM:607789
neXtProt:NX_Q92576 PharmGKB:PA33261 HOVERGEN:HBG039623
InParanoid:Q92576 OMA:KQNMTTD PhylomeDB:Q92576 ChiTaRS:PHF3
EvolutionaryTrace:Q92576 GenomeRNAi:23469 NextBio:45797
ArrayExpress:Q92576 Bgee:Q92576 CleanEx:HS_PHF3
Genevestigator:Q92576 GermOnline:ENSG00000118482 Uniprot:Q92576
Length = 2039
Score = 193 (73.0 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 65/227 (28%), Positives = 105/227 (46%)
Query: 83 KKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKT 142
+K+ + + T N + D ++K +SG+ +++K A K+ +
Sbjct: 803 EKLGLSKHTTNDRTKYIDDTVKHKVKILKRESGEGRNSSDCRDNEIKKWQLAPLRKMGQP 862
Query: 143 GSVSRSETVQVEKKETNGDSVMDRGEAXXXXXXXXXXXQAPSVRKPSQGTIATPKLTQLI 202
RS + EK +V GE Q +K +G +
Sbjct: 863 VLPRRSSEEKSEKIPKESTTVTCTGEKASKPGTHEK--QEMKKKKVEKGVLNVHPAASAS 920
Query: 203 KCN-DSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGA 261
K + D R +R L + L K ++++ ++ +E A +VA +E +F R T A
Sbjct: 921 KPSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATKIEKELFSFF-RDTDA 975
Query: 262 E-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE 307
+ K KYRS+MFN++D KN L K+VL GEVTP+ L+ MSPEE+AS E
Sbjct: 976 KYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKE 1022
>UNIPROTKB|E2R727 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 CTD:23469 OMA:KQNMTTD
EMBL:AAEX03008426 RefSeq:XP_538985.2 Ensembl:ENSCAFT00000003930
GeneID:481864 KEGG:cfa:481864 NextBio:20856589 Uniprot:E2R727
Length = 2043
Score = 192 (72.6 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 80/261 (30%), Positives = 121/261 (46%)
Query: 69 EKIQIVASNLLDIWKKIVIEETTRN---KKNG-----STGDKSSVTTGVVK--------- 111
+K +IV S++L+ K+ ++ R +K G T DK+ VK
Sbjct: 775 KKTEIVDSDILENQAKVEVQSEDRTMEYEKLGLSKHIPTNDKTKYIEDTVKHKVKILKRE 834
Query: 112 PDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEK--KETNGDSVMDRGEA 169
P GK + S +K K A K+ + RS + EK KET +V+ GE
Sbjct: 835 PGEGKNSADCRDSEIK--KWQLAPLRKMGQPVLPRRSSEEKSEKIPKETT--TVICTGEK 890
Query: 170 XXXXXXXXXXXQAPSVRKPSQG--TIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEA 227
Q +K +G + P + D R +R L + L + +E+
Sbjct: 891 GSKPGAHEK--QEIKKKKSEKGIPNVHVPTTSTSKPSADQIRQSVRHSLKDILMRRLTES 948
Query: 228 DEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRVL 286
+ ++ +E A +VA +E +F R T A+ K KYRS+MFN++D KN L K+VL
Sbjct: 949 NLKVPEEKAA----KVATKIEKELFSFF-RDTDAKYKNKYRSLMFNLKDPKNNILFKKVL 1003
Query: 287 LGEVTPERLVTMSPEEMASDE 307
GEVTP+ L+ MSPEE+AS E
Sbjct: 1004 KGEVTPDHLIRMSPEELASKE 1024
>RGD|1304925 [details] [associations]
symbol:Phf3 "PHD finger protein 3" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
RGD:1304925 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:CH473965 GeneTree:ENSGT00530000063844 CTD:23469
IPI:IPI00366920 RefSeq:NP_001102261.1 UniGene:Rn.21075
Ensembl:ENSRNOT00000015638 GeneID:363210 KEGG:rno:363210
UCSC:RGD:1304925 OrthoDB:EOG4M91RC NextBio:682838 Uniprot:D3ZKI5
Length = 2020
Score = 198 (74.8 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 63/202 (31%), Positives = 99/202 (49%)
Query: 109 VVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGE 168
+VK DSG+ + +++K A K+ + RS + EK + ++ GE
Sbjct: 811 IVKRDSGEGKTSSDSRDNEIKKWQLAPLRKLGQPLLPRRSSEEKSEKIAKDSAALTCAGE 870
Query: 169 AXXXXXXXXXXXQAPSVRKPSQG--TIATPKLTQLIKCNDSSRDKIRELLANALSKVTSE 226
Q +K +G + P + D R +R L + L K ++
Sbjct: 871 KAARSGTHEK--QETKKKKVEKGGPNVHPPAAAAIKPSADQIRQSVRHSLKDILMKRLTD 928
Query: 227 ADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRV 285
++ +I +E +A +VA +E +F R T A+ K KYRS+MFN++D KN L K+V
Sbjct: 929 SNLKIPEEKSA----KVATKIEKELFSFF-RDTDAKYKNKYRSLMFNLKDPKNNILFKKV 983
Query: 286 LLGEVTPERLVTMSPEEMASDE 307
L GEVTP+ L+ MSPEE+AS E
Sbjct: 984 LKGEVTPDHLIRMSPEELASKE 1005
Score = 38 (18.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 301 EEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPM 360
E + ++ R Q N+K R + + + + R G+R R EP+
Sbjct: 1617 ENLVANTRSPQFINLKRDPRQAAGRSQQTVSDSKDGESCRNGERHSVCAPSYNREPVEPV 1676
Query: 361 T 361
+
Sbjct: 1677 S 1677
>UNIPROTKB|E1BVY1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:AADN02002654
EMBL:AADN02002655 IPI:IPI00602717 Ensembl:ENSGALT00000026230
Uniprot:E1BVY1
Length = 2050
Score = 190 (71.9 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 69/231 (29%), Positives = 106/231 (45%)
Query: 90 TTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSR-S 148
T + K+ TG K V + K +SG + ++ +K KV +T + R S
Sbjct: 806 TEKGKQTEDTG-KHKVK--IFKRESGDGKNLSESRDSDTKKGQHVPARKVSQTAVIPRRS 862
Query: 149 ETVQVEKKETNGDSVMDRGEAXXXXXXXXXXXQAPSVRKPSQGTIATPKLTQLIKCNDSS 208
+ EK SV+++ Q +K +G + L + + S
Sbjct: 863 SEEKGEKISKESLSVVEKS-----TKSGVHEKQEIKKKKNEKGPTSATHLPN-VPASKPS 916
Query: 209 RDKIRELLANALSKVTSE--ADEEI-IDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLK 265
D+IR + +L ++ + D + I E A +VA +E +F + K K
Sbjct: 917 ADQIRHSVKQSLKEILMKRLTDSSLKIPEERAA---KVATRIERELFSFFRDTDSKYKNK 973
Query: 266 YRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQ--RQIEN 314
YRS+MFN++D KN L K+VL GEVTP+ L+ MSPEE+AS E RQ EN
Sbjct: 974 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIKMSPEELASKELAAWRQREN 1024
Score = 39 (18.8 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 292 PERLVTM-SPEEMASDERQRQIENIKEK 318
PE+ PEE A E+ ++ E KEK
Sbjct: 2000 PEKKTEKPKPEEQAQ-EKDKEREKSKEK 2026
>ZFIN|ZDB-GENE-030131-6117 [details] [associations]
symbol:dido1 "death inducer-obliterator 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 ZFIN:ZDB-GENE-030131-6117 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:BX296530 EMBL:BX005175
IPI:IPI00971682 Ensembl:ENSDART00000110882 ArrayExpress:F1QQA3
Bgee:F1QQA3 Uniprot:F1QQA3
Length = 2779
Score = 179 (68.1 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 48/118 (40%), Positives = 68/118 (57%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
N+ R IR L + L K S++D+ + E N R+AV +E MF + K
Sbjct: 758 NNQMRSNIRRSLTDILYKRVSDSDDLTMSE-NEVG--RLAVGIEKEMFNLCMNTDNKYKN 814
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQ--RQIENIKEKAL 320
KYRS+MFN++D KN L RV+ GE++P RLV +SPEE+ S E R+ E+ EK+L
Sbjct: 815 KYRSLMFNLKDPKNKGLFYRVVGGEISPFRLVRLSPEELLSKELSDWRKSES-SEKSL 871
Score = 49 (22.3 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 115 GKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKET 158
GK K ++ S K +K +T ++ + + +G RS + Q +++E+
Sbjct: 494 GKDSKQKEKSKSKAQKKTTNKSPQKKSSGPERRSSSNQGQEEES 537
Score = 37 (18.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 116 KIDKVQKTSAVKVEKVSTAETVK-VE-KTGSVSRSETVQVEKKETNGDSV 163
KI++ QK ++ + +K + V+ KTG S S+ E +E G+ V
Sbjct: 157 KIEE-QKVASPEKKKRGRGRAKRPVKPKTGGGSVSDDGSSENEEETGEEV 205
>TAIR|locus:2050311 [details] [associations]
symbol:AT2G25640 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017890 Pfam:PF07500
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 EMBL:CP002685
GO:GO:0008270 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 IPI:IPI00531004
RefSeq:NP_180135.2 UniGene:At.38993 ProteinModelPortal:F4ISL5
SMR:F4ISL5 PRIDE:F4ISL5 EnsemblPlants:AT2G25640.1 GeneID:817105
KEGG:ath:AT2G25640 OMA:IGAMAND Uniprot:F4ISL5
Length = 745
Score = 153 (58.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 33/88 (37%), Positives = 54/88 (61%)
Query: 239 DPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTM 298
DP +A +E+ +F+ G K K RS++FN++D+ NP LR++V+ GE+ ERL +M
Sbjct: 315 DPQVLAFEIETELFKLFGGVNKKYKEKGRSLLFNLKDKSNPKLREKVMYGEIAAERLCSM 374
Query: 299 SPEEMASDE----RQRQIENIKEKALFE 322
S EE+AS E RQ + E + + + +
Sbjct: 375 SAEELASKELAEWRQAKAEEMAQMVVLQ 402
Score = 59 (25.8 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 184 SVRKPSQGTIATPKLTQ-LIKCNDSSRDKIRELLANALSKVTSEAD----EEIIDEVNAC 238
+ RKP T+ P L + + + S R K+RE LA AL+ V + D +++D
Sbjct: 135 AARKP---TLQKPMLLKPQSESSGSVRSKMRESLAGALAMVQCQMDVPNESKMLDSETVA 191
Query: 239 DPIRVAVS 246
+P+ VS
Sbjct: 192 NPLEGHVS 199
>UNIPROTKB|F1PLS2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AAEX03014133 Ensembl:ENSCAFT00000020204 Uniprot:F1PLS2
Length = 1518
Score = 167 (63.8 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 47/138 (34%), Positives = 71/138 (51%)
Query: 184 SVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRV 243
S+ P+ G + + T L + N R IR L L K +++D+ I+ E ++
Sbjct: 656 SLASPAPGRLGSSNPT-LSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTESEVG---KI 711
Query: 244 AVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEM 303
A+ +E MF + K KYRSIMFN++D KN L RVL E++ +LV M PEE+
Sbjct: 712 ALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEEL 771
Query: 304 ASDE----RQRQIENIKE 317
S E R+R + + E
Sbjct: 772 VSKELSTWRERPTKPVME 789
>UNIPROTKB|E2R336 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010923 "negative regulation of phosphatase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 Ensembl:ENSCAFT00000017200
Uniprot:E2R336
Length = 718
Score = 162 (62.1 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 41/117 (35%), Positives = 71/117 (60%)
Query: 212 IRELLANALSKVTSEADEEIIDEVNACDPIR-VAVSVESVMFEKLGRSTGAE-KLKYRSI 269
+R + +A+ +V +E+ D V + + + +A +E+ +F L ++T K KYRS+
Sbjct: 104 VRNTVVHAMQEVLRSRLQELPDLVLSEEAVEGIAAGIETALFN-LTQTTSCRYKTKYRSL 162
Query: 270 MFNIRDEKNPDLRKRVLLGEVTPERLVTMS-----PEEMA---SDERQRQIENIKEK 318
+FN+RD +NPDL +V+ G+VTPE LV MS P+E+A E +R +E I+++
Sbjct: 163 LFNLRDPRNPDLFLKVVRGDVTPEDLVQMSSIQLAPQELACWRDQEEKRGLEIIEQQ 219
>UNIPROTKB|F1NFF0 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:AADN02019222 EMBL:AADN02019223
IPI:IPI00821338 Ensembl:ENSGALT00000039659 ArrayExpress:F1NFF0
Uniprot:F1NFF0
Length = 2253
Score = 166 (63.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 72/272 (26%), Positives = 117/272 (43%)
Query: 69 EKIQIVASNLLDIWKKIVIEETTRNKKNGST-GDKSSV-TTGVVKPDSGKIDKVQKTSAV 126
EK ++S+LL +K E+ +K T K +V +T V + + + K
Sbjct: 541 EKTAAISSSLL--FKSQKGEKKKEDKAAEHTVASKRAVASTSVAEKQTSSLTK--NLLPK 596
Query: 127 KVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAXXXXXXXXXXXQAPSV- 185
K S+ K S + V +K + DSV + A + S+
Sbjct: 597 KAPTFSSLPLTKQPLKSSTGSFKGVIPKKPWPSSDSVPSKPSAPPGSSLPKKPVASSSLG 656
Query: 186 ---RKPSQGTIATPKLTQLIKC---------NDSSRDKIRELLANALSKVTSEADEEIID 233
++P+ ++ T + +K N R IR L L K +++D+ ++
Sbjct: 657 AGLKRPAPSSVPTASGSSQVKVSAIPIQSQPNSQIRQNIRRSLKEILWKRVNDSDDLVMT 716
Query: 234 EVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPE 293
E +VA+++E MF + K KYRSIMFN++D KN L RVL GE++
Sbjct: 717 ESEVG---KVALNIEKEMFNLFHVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLHGEISLS 773
Query: 294 RLVTMSPEEMASDERQRQIENIKEKALFECQR 325
+LV M PEE+ S E E KA+ E ++
Sbjct: 774 KLVRMKPEELLSKELSVWKEK-PAKAVIESRK 804
>UNIPROTKB|F1NGH5 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AADN02019222 EMBL:AADN02019223 IPI:IPI00577866
Ensembl:ENSGALT00000009066 ArrayExpress:F1NGH5 Uniprot:F1NGH5
Length = 2287
Score = 166 (63.5 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 72/272 (26%), Positives = 117/272 (43%)
Query: 69 EKIQIVASNLLDIWKKIVIEETTRNKKNGST-GDKSSV-TTGVVKPDSGKIDKVQKTSAV 126
EK ++S+LL +K E+ +K T K +V +T V + + + K
Sbjct: 541 EKTAAISSSLL--FKSQKGEKKKEDKAAEHTVASKRAVASTSVAEKQTSSLTK--NLLPK 596
Query: 127 KVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAXXXXXXXXXXXQAPSV- 185
K S+ K S + V +K + DSV + A + S+
Sbjct: 597 KAPTFSSLPLTKQPLKSSTGSFKGVIPKKPWPSSDSVPSKPSAPPGSSLPKKPVASSSLG 656
Query: 186 ---RKPSQGTIATPKLTQLIKC---------NDSSRDKIRELLANALSKVTSEADEEIID 233
++P+ ++ T + +K N R IR L L K +++D+ ++
Sbjct: 657 AGLKRPAPSSVPTASGSSQVKVSAIPIQSQPNSQIRQNIRRSLKEILWKRVNDSDDLVMT 716
Query: 234 EVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPE 293
E +VA+++E MF + K KYRSIMFN++D KN L RVL GE++
Sbjct: 717 ESEVG---KVALNIEKEMFNLFHVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLHGEISLS 773
Query: 294 RLVTMSPEEMASDERQRQIENIKEKALFECQR 325
+LV M PEE+ S E E KA+ E ++
Sbjct: 774 KLVRMKPEELLSKELSVWKEK-PAKAVIESRK 804
>UNIPROTKB|I3LFG3 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
EMBL:CU861549 Ensembl:ENSSSCT00000023384 Uniprot:I3LFG3
Length = 222
Score = 144 (55.7 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 243 VAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEE 302
+A +E+ +F+ + G + KYRS++FN+RD +NPDL +V+ G+VTP+ LV M+ +
Sbjct: 24 LAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIHGDVTPQGLVRMNSVQ 83
Query: 303 MASDERQR 310
+A E R
Sbjct: 84 LAPQELAR 91
>UNIPROTKB|E1BRR3 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
CTD:170082 OMA:LKKKAKC EMBL:AADN02011353 IPI:IPI00596200
RefSeq:XP_416834.1 UniGene:Gga.12219 ProteinModelPortal:E1BRR3
Ensembl:ENSGALT00000026765 GeneID:418636 KEGG:gga:418636
NextBio:20821792 Uniprot:E1BRR3
Length = 359
Score = 129 (50.5 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 48/177 (27%), Positives = 82/177 (46%)
Query: 209 RDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRS 268
R K +LL AL+ S D+E D+ + ++ +E +F ++ K RS
Sbjct: 182 RCKCTDLLYKALTG--SAKDKEETDKW-----LELSKEIEEHVFALHCKNDKKYKNCIRS 234
Query: 269 IMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGE 328
+ N+++ K+ +L+ + G ++P+ M+ EMASDE ++ E ++ E Q
Sbjct: 235 KISNLKNPKSCNLKHNLFSGTLSPKAFAEMTVMEMASDELKQLRALYTESSIQEHQLPQV 294
Query: 329 ATAT-TDQFKCSRCGQRKCTYYQMQ---------TRSA--DEPMTTYVTCVNCSKRW 373
T T++ KC RC + CT + RS DE M T+V C C ++W
Sbjct: 295 INGTQTNKIKCRRCEKSDCTVTMIARGTLFLPGWVRSTNPDEQMLTFVICNECGEQW 351
Score = 62 (26.9 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 36 DALKRLKSFPVTYDVLVSTQVGKRL-RPLTKHPREKIQIVASNLLDIWKKIVIEETTRNK 94
D LK L+ +T + L T+V K + R L P +++ A LL WK + +N
Sbjct: 28 DHLKELEDVSMTVEYLQGTEVAKVVYRILKSCPSAELKKKAKQLLSRWKALY-----KNN 82
Query: 95 KNGSTGDKSSVTTGV 109
+ S K SV+ V
Sbjct: 83 RLQSVQVKKSVSVCV 97
>CGD|CAL0004345 [details] [associations]
symbol:RPC11 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=IEA] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IEA] [GO:0042797 "tRNA transcription
from RNA polymerase III promoter" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 CGD:CAL0004345 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 EMBL:AACQ01000059
EMBL:AACQ01000058 GO:GO:0003899 eggNOG:COG1594 KO:K03019
RefSeq:XP_717083.1 RefSeq:XP_717162.1 ProteinModelPortal:Q5A5N9
STRING:Q5A5N9 GeneID:3641239 GeneID:3641326 KEGG:cal:CaO19.12820
KEGG:cal:CaO19.5360 Uniprot:Q5A5N9
Length = 111
Score = 127 (49.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/54 (50%), Positives = 32/54 (59%)
Query: 326 GGEAT-ATTDQF--KC--SRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
GGE T DQ +C CG K ++Q+Q RSADEPMTT+ CV C RWK
Sbjct: 56 GGEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWK 109
>TAIR|locus:2179419 [details] [associations]
symbol:AT5G25520 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 EMBL:CP002688 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
IPI:IPI00526909 RefSeq:NP_974833.1 UniGene:At.43475
ProteinModelPortal:F4JWU1 SMR:F4JWU1 PRIDE:F4JWU1
EnsemblPlants:AT5G25520.2 GeneID:832627 KEGG:ath:AT5G25520
OMA:HEHEESP PhylomeDB:F4JWU1 Uniprot:F4JWU1
Length = 997
Score = 158 (60.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 46/140 (32%), Positives = 73/140 (52%)
Query: 189 SQGTIATPKLTQLIKCNDSS-RDKI---RELL-ANALSKVTSEADEEIIDEVNAC--DPI 241
+Q + + ++ C+D D I ELL N LS V + +E DP
Sbjct: 302 NQSDVQKTQFDEVFPCDDVRFSDSIFTGDELLQGNGLSWVLEPVSDFGENETQKSFEDPE 361
Query: 242 RVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPE 301
+A +E +F+ G K K RS++FN++D+ NP+LR+ V+ G+++PERL M+ E
Sbjct: 362 LLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAE 421
Query: 302 EMASDE----RQRQIENIKE 317
E+AS E RQ + E + E
Sbjct: 422 ELASKELSQWRQAKAEEMAE 441
Score = 39 (18.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 88 EETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVE 140
EE+ + KKN T +++SV DS + TS E ++ A + + E
Sbjct: 229 EESPKEKKNSET-EEASVPVA----DSNEPASACGTSVTVGEDITPAMSTRDE 276
>ASPGD|ASPL0000042794 [details] [associations]
symbol:AN1777 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 GO:GO:0046872 EMBL:BN001307
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 OrthoDB:EOG4PRX19 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 EMBL:AACD01000028
RefSeq:XP_659381.1 ProteinModelPortal:Q5BCF3
EnsemblFungi:CADANIAT00008424 GeneID:2875165 KEGG:ani:AN1777.2
eggNOG:NOG45011 HOGENOM:HOG000215957 OMA:ERDMICC Uniprot:Q5BCF3
Length = 889
Score = 152 (58.6 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 34/83 (40%), Positives = 56/83 (67%)
Query: 242 RVAVSVESVMFEKL----GRSTG-AEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLV 296
++ +SVE +++ L G +T A K++ R+I+FN++ KNP LR R+L+G +TP+ L
Sbjct: 323 QLGISVEEALYQNLMGGGGEATSEAYKIQLRAILFNVK--KNPSLRDRLLVGSLTPDALS 380
Query: 297 TMSPEEMASDERQRQIENIKEKA 319
MS +EMAS+E Q++ IK +A
Sbjct: 381 RMSSQEMASEELQQKDAEIKREA 403
>UNIPROTKB|E1BCR2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:DAAA02036239 IPI:IPI00971510 RefSeq:XP_003586878.1
UniGene:Bt.14503 Ensembl:ENSBTAT00000007879 GeneID:519826
KEGG:bta:519826 Uniprot:E1BCR2
Length = 2196
Score = 154 (59.3 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 42/117 (35%), Positives = 62/117 (52%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
N R IR L L K +++D+ I+ E N ++A+ +E MF + K
Sbjct: 669 NSQIRQNIRRSLKEILWKRVNDSDDLIMTE-NEVG--KIALLIEKEMFNLFRVTDNRYKS 725
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE----RQRQIENIKE 317
KYRS+MFN++D KN L RVL E++ +LV M PEE+ S E R+R + + E
Sbjct: 726 KYRSLMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSVWRERTTKPVME 782
>SGD|S000002452 [details] [associations]
symbol:RPC11 "RNA polymerase III subunit C11" species:4932
"Saccharomyces cerevisiae" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0006386 "termination of RNA polymerase III
transcription" evidence=IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IMP;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
SGD:S000002452 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006938 EMBL:Z49209 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 GO:GO:0006386 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 PDB:3QT1 PDBsum:3QT1
Reactome:REACT_87991 GO:GO:0042797 HOGENOM:HOG000228131 KO:K03019
OMA:ITRKVNN GeneTree:ENSGT00550000075071 OrthoDB:EOG469V4B
EMBL:AF108188 EMBL:AY557636 EMBL:AY899253 PIR:S54031
RefSeq:NP_010330.1 ProteinModelPortal:Q04307 SMR:Q04307
DIP:DIP-887N IntAct:Q04307 MINT:MINT-542850 STRING:Q04307
PaxDb:Q04307 PeptideAtlas:Q04307 EnsemblFungi:YDR045C GeneID:851615
KEGG:sce:YDR045C CYGD:YDR045c NextBio:969139 Genevestigator:Q04307
GermOnline:YDR045C Uniprot:Q04307
Length = 110
Score = 123 (48.4 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 341 CGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
CG ++Q+Q RSADEPMTT+ CVNC RWK
Sbjct: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
>UNIPROTKB|Q9BTC0 [details] [associations]
symbol:DIDO1 "Death-inducer obliterator 1" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0005737 EMBL:CH471077 GO:GO:0006915 Reactome:REACT_115566
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Reactome:REACT_111183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL035669 EMBL:AY481571 EMBL:AY481572 EMBL:AB002331
EMBL:AK002127 EMBL:AL117379 EMBL:BC000770 EMBL:BC004237
EMBL:BC012757 EMBL:BC014489 EMBL:BC137177 EMBL:AL133063
IPI:IPI00183350 IPI:IPI00249982 IPI:IPI00249984 IPI:IPI00619921
RefSeq:NP_001180298.1 RefSeq:NP_001180299.1 RefSeq:NP_071388.2
RefSeq:NP_149072.2 RefSeq:NP_542986.1 RefSeq:NP_542987.2
UniGene:Hs.517172 ProteinModelPortal:Q9BTC0 SMR:Q9BTC0
IntAct:Q9BTC0 STRING:Q9BTC0 PhosphoSite:Q9BTC0 DMDM:116241332
PaxDb:Q9BTC0 PeptideAtlas:Q9BTC0 PRIDE:Q9BTC0 DNASU:11083
Ensembl:ENST00000266070 Ensembl:ENST00000266071
Ensembl:ENST00000354665 Ensembl:ENST00000370366
Ensembl:ENST00000370368 Ensembl:ENST00000370371
Ensembl:ENST00000395335 Ensembl:ENST00000395340
Ensembl:ENST00000395343 GeneID:11083 KEGG:hsa:11083 UCSC:uc002ydr.2
UCSC:uc002ydt.2 UCSC:uc002ydv.2 UCSC:uc011aao.1 CTD:11083
GeneCards:GC20M061510 HGNC:HGNC:2680 HPA:CAB004374 MIM:604140
neXtProt:NX_Q9BTC0 PharmGKB:PA27147 eggNOG:NOG255142
HOVERGEN:HBG060199 InParanoid:Q9BTC0 OMA:PNRMCAD OrthoDB:EOG41ZFCM
ChiTaRS:DIDO1 GenomeRNAi:11083 NextBio:42138 Bgee:Q9BTC0
Genevestigator:Q9BTC0 GermOnline:ENSG00000101191 Uniprot:Q9BTC0
Length = 2240
Score = 153 (58.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 39/103 (37%), Positives = 56/103 (54%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
N R IR L L K +++D+ I+ E N ++A+ +E MF + K
Sbjct: 667 NSQIRQNIRRSLKEILWKRVNDSDDLIMTE-NEVG--KIALHIEKEMFNLFQVTDNRYKS 723
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE 307
KYRSIMFN++D KN L RVL E++ +LV + PEE+ S E
Sbjct: 724 KYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKE 766
>FB|FBgn0082831 [details] [associations]
symbol:pps "protein partner of snf" species:7227 "Drosophila
melanogaster" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR006576 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 Pfam:PF07533 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00592 EMBL:AE014297
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 GO:GO:0016817 RefSeq:NP_650193.1
ProteinModelPortal:Q9VG78 SMR:Q9VG78 IntAct:Q9VG78 MINT:MINT-985343
STRING:Q9VG78 PRIDE:Q9VG78 EnsemblMetazoa:FBtr0082586 GeneID:41524
KEGG:dme:Dmel_CG6525 UCSC:CG6525-RA CTD:41524 FlyBase:FBgn0082831
InParanoid:Q9VG78 OrthoDB:EOG4CRJDW PhylomeDB:Q9VG78
GenomeRNAi:41524 NextBio:824247 ArrayExpress:Q9VG78 Bgee:Q9VG78
Uniprot:Q9VG78
Length = 2016
Score = 162 (62.1 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 49/140 (35%), Positives = 76/140 (54%)
Query: 183 PSVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIR 242
P+V+ P+ IA K + ++ R +RE L + + ++A EE + P
Sbjct: 1256 PTVQAPTPNRIAAGK-PEPVRIG--IRRSLREQLLARIKE--AQAAEENSGQPTTQWPTV 1310
Query: 243 VAV-----SVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLV 296
+ V +VE MF GR GA+ K KYRS+MFNI+D KN L +++ +V P +LV
Sbjct: 1311 LEVDQFVKNVELEMFNSFGRDVGAKYKAKYRSLMFNIKDRKNRTLFEKICAKQVEPRQLV 1370
Query: 297 TMSPEEMASDE--RQRQIEN 314
M+PE++AS E + R+ EN
Sbjct: 1371 RMTPEQLASQELAKWREEEN 1390
Score = 37 (18.1 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 40 RLKSFPVT-YDVLVSTQVGKRLRPLTK--H---PREKIQIVASN 77
+++ PV + V + Q+ +++ + K H PR+K +I+A+N
Sbjct: 262 KVQRLPVKPHQVQQAAQLQPKVQLIRKPIHSPLPRQKPEIIANN 305
>UNIPROTKB|F1SV96 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:CU861549 Ensembl:ENSSSCT00000004001 Uniprot:F1SV96
Length = 1168
Score = 154 (59.3 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 34/110 (30%), Positives = 64/110 (58%)
Query: 212 IRELLANALSKVTSEADEEIIDEVNACDPIR-VAVSVESVMFEKLGRSTGAEKLKYRSIM 270
+R + A+ +V +E+ D V + + +A +E+ +F+ + G + KYRS++
Sbjct: 543 VRSTVVRAMREVLWSRLQELPDLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLL 602
Query: 271 FNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKAL 320
FN+RD +NPDL +V+ G+VTP+ LV M+ ++A E R + +++ L
Sbjct: 603 FNLRDPRNPDLFLKVIHGDVTPQGLVRMNSVQLAPQELARWRDQEEKRGL 652
Score = 40 (19.1 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 23 GVSSGGPEVSRCVDALKRLKSFPVTYD 49
G + G C +++L+S P+ D
Sbjct: 211 GPADPGGSWEECASGIEKLESLPIAGD 237
>ZFIN|ZDB-GENE-090313-207 [details] [associations]
symbol:phf3 "PHD finger protein 3" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
ZFIN:ZDB-GENE-090313-207 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 EMBL:BX005106
IPI:IPI00486005 UniGene:Dr.75445 Ensembl:ENSDART00000043440
Ensembl:ENSDART00000100352 HOGENOM:HOG000213981 OMA:CENNDET
NextBio:20880263 Uniprot:B8A483
Length = 1691
Score = 150 (57.9 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 57/200 (28%), Positives = 89/200 (44%)
Query: 113 DSGKIDKVQKTSAVKV-EKVSTAETVKVEKTG-SVSRSETVQVEKKE---TNGDSVMDRG 167
D K+ +++K V K E K + + S +S Q ++ + T G R
Sbjct: 656 DLAKVQQMEKEDQEYVCLKCCAQEDEKTQASELSDDKSAAKQKQRPQQSLTAGGIRPFRK 715
Query: 168 EAXXXXXXXXXXXQAPSVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEA 227
+A + P+V+ ++ +P ++ R +R+ L L K + E+
Sbjct: 716 DAGERRPSEDSAQKGPNVKHETKKVKISP-VSSKKPSTGHIRRSVRDSLEEILLKRSKES 774
Query: 228 DEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLL 287
D +I + P VA E +F K KYRS+ FN++D KN L KRVL
Sbjct: 775 DLKISSD----RPAEVARRTEKELFALFQGVDSKYKNKYRSLTFNLKDAKNNVLFKRVLK 830
Query: 288 GEVTPERLVTMSPEEMASDE 307
GEV+P LV M+ EE+AS E
Sbjct: 831 GEVSPADLVRMTAEELASKE 850
>WB|WBGene00007616 [details] [associations]
symbol:rpoa-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0000003 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:Z81035
eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
KO:K03000 OMA:YHTLQLR PIR:T19321 RefSeq:NP_506572.1 HSSP:Q56254
ProteinModelPortal:O17587 SMR:O17587 STRING:O17587 PaxDb:O17587
EnsemblMetazoa:C15H11.8.1 EnsemblMetazoa:C15H11.8.2 GeneID:182648
KEGG:cel:CELE_C15H11.8 UCSC:C15H11.8 CTD:182648 WormBase:C15H11.8
InParanoid:O17587 NextBio:918334 Uniprot:O17587
Length = 119
Score = 121 (47.7 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 306 DERQRQIENIKEKALFEC---QRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTT 362
D+ ++E I E+ + + + A A D C++CG K +Y MQTRSADE T
Sbjct: 46 DQVVSRVEKIYERTVADTDGIENDESADAVVDHI-CTKCGHSKASYSTMQTRSADEGQTV 104
Query: 363 YVTCVNCSKR 372
+ TC+ C K+
Sbjct: 105 FYTCLKCKKK 114
>UNIPROTKB|F1SRI2 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
OMA:LKKKAKC EMBL:CU207339 RefSeq:XP_001927499.1
RefSeq:XP_001927509.1 RefSeq:XP_001927522.1 RefSeq:XP_003134980.1
RefSeq:XP_003134981.1 RefSeq:XP_003134982.1 UniGene:Ssc.1528
ProteinModelPortal:F1SRI2 Ensembl:ENSSSCT00000013261
GeneID:100156439 KEGG:ssc:100156439 Uniprot:F1SRI2
Length = 352
Score = 130 (50.8 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 47/178 (26%), Positives = 79/178 (44%)
Query: 209 RDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRS 268
R K ELL AL+ ++E + R A +E +F ++ K RS
Sbjct: 175 RAKCTELLYEALAAFSTEQPRADLWH-------RFAQEIEECIFTLHAKNLKKYKTCIRS 227
Query: 269 IMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFE--CQRG 326
+ N+++ +N LR+ +L G ++P M+ +MAS E ++ + E + E +G
Sbjct: 228 KIANLKNPRNSHLRENLLSGIMSPRAFAEMTVMDMASKELKQLRASYTESCIQEHSLPQG 287
Query: 327 GEATATTDQFKCSRCGQRKCT---------YYQMQTRSA--DEPMTTYVTCVNCSKRW 373
E T T + +C RC + C + R+A DE + TYV C C ++W
Sbjct: 288 VEGTPTK-KVRCRRCEKFNCQVTVIARGALFLPSWVRNAKPDEELMTYVICKECGEQW 344
Score = 51 (23.0 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 38 LKRLKSFPVTYDVLVSTQVGKRLRPLTKH-PREKIQIVASNLLDIWKKIVIEETTRNK 94
L L++ VT ++L T V + + + KH P ++ A LL WK + + + K
Sbjct: 30 LTELETLRVTKELLQETVVVRAVYRVLKHCPTAALKKKAKCLLSKWKALYKDAQVKAK 87
>MGI|MGI:1344352 [details] [associations]
symbol:Dido1 "death inducer-obliterator 1" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 MGI:MGI:1344352 GO:GO:0005737
GO:GO:0006915 GO:GO:0005654 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 eggNOG:NOG255142 HOVERGEN:HBG060199
OMA:PNRMCAD EMBL:AJ238332 EMBL:AY425951 EMBL:AY425952 EMBL:AK129117
EMBL:AK032843 EMBL:AK042474 EMBL:AK044919 EMBL:AL732560
EMBL:BC029110 EMBL:BC044755 EMBL:BC096662 EMBL:BC138712
EMBL:BC138713 IPI:IPI00227469 IPI:IPI00453851 IPI:IPI00828403
RefSeq:NP_035935.2 RefSeq:NP_780760.2 RefSeq:NP_808520.2
UniGene:Mm.253836 UniGene:Mm.490825 PDB:1WEM PDBsum:1WEM
ProteinModelPortal:Q8C9B9 SMR:Q8C9B9 STRING:Q8C9B9
PhosphoSite:Q8C9B9 PaxDb:Q8C9B9 PRIDE:Q8C9B9
Ensembl:ENSMUST00000037764 Ensembl:ENSMUST00000087517
Ensembl:ENSMUST00000103055 Ensembl:ENSMUST00000103056
Ensembl:ENSMUST00000103057 Ensembl:ENSMUST00000130986 GeneID:23856
KEGG:mmu:23856 UCSC:uc008ojq.1 UCSC:uc008ojr.1 UCSC:uc008oju.1
GeneTree:ENSGT00530000063844 InParanoid:Q8C9B9
EvolutionaryTrace:Q8C9B9 NextBio:303557 Bgee:Q8C9B9
CleanEx:MM_DIDO1 CleanEx:MM_DIO1 Genevestigator:Q8C9B9
Uniprot:Q8C9B9
Length = 2256
Score = 156 (60.0 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 40/103 (38%), Positives = 56/103 (54%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
N R IR L L K +++D+ I+ E N ++A+ +E MF + K
Sbjct: 664 NSQIRQNIRRSLKEILWKRVNDSDDLIMTE-NEVG--KIALHIEKEMFNLFQVTDNRYKS 720
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE 307
KYRSIMFN++D KN L RVL E++ +LV M PEE+ S E
Sbjct: 721 KYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKE 763
Score = 42 (19.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 113 DSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETV----QVEKKETNGDSVMDRGE 168
DS + VQ SA + + E + G VS+SET Q+E K T G++ + E
Sbjct: 193 DSAETGSVQIGSAEQDRPLCKQEPEASQ--GPVSQSETDDIENQLEGKATQGNTEENPRE 250
Query: 169 A 169
A
Sbjct: 251 A 251
>TAIR|locus:2144211 [details] [associations]
symbol:AT5G11430 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
EMBL:CP002688 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 UniGene:At.69010
IPI:IPI00547412 RefSeq:NP_196704.2 UniGene:At.5125 UniGene:At.73156
ProteinModelPortal:F4JXV3 SMR:F4JXV3 PRIDE:F4JXV3
EnsemblPlants:AT5G11430.1 GeneID:831014 KEGG:ath:AT5G11430
OMA:VITQENT Uniprot:F4JXV3
Length = 873
Score = 136 (52.9 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 239 DPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTM 298
DP +A +E +++ G + + RS++FN++D+ NP+LR+RV+ E++ ERL +M
Sbjct: 260 DPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCSM 319
Query: 299 SPEEMASDE----RQRQIENIKEKALFE 322
+ EE+AS E RQ + E + + + +
Sbjct: 320 TAEELASKELSQWRQAKAEEMAKMVVLQ 347
Score = 54 (24.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 205 NDSSRDKIRELLANALSKVTSEAD 228
N+S R K+RE LA+AL+ V + D
Sbjct: 108 NESVRSKMRESLASALALVKKDDD 131
Score = 37 (18.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 187 KPSQGTIATPKLTQ 200
K + GT+ TP +TQ
Sbjct: 136 KENIGTVETPVITQ 149
>UNIPROTKB|H0YF46 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
SUPFAM:SSF46942 HGNC:HGNC:26338 ChiTaRS:SPOCD1
Ensembl:ENST00000528579 Uniprot:H0YF46
Length = 255
Score = 136 (52.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 36/109 (33%), Positives = 60/109 (55%)
Query: 230 EIIDEVNACDPIR-VAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLG 288
E+ D V + + + +A +E+ +++ + G K KYRS++FN+RD +N DL +V+ G
Sbjct: 42 ELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHG 101
Query: 289 EVTPERLVTMSPEEMASDE--RQRQIENIKEKALF-ECQRGGEATATTD 334
+VTP LV MS ++A E R R E + +F +C A+ D
Sbjct: 102 DVTPYDLVRMSSMQLAPQELARWRDQEEKRGPQMFMDCSPQALPIASED 150
>TAIR|locus:2054080 [details] [associations]
symbol:AT2G13640 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003617 InterPro:IPR017923 PROSITE:PS51319
SMART:SM00509 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0006351 EMBL:AC007063 SUPFAM:SSF47676 UniGene:At.30812
ProtClustDB:CLSN2683344 IPI:IPI00546746 PIR:D84509
RefSeq:NP_178987.1 UniGene:At.75290 UniGene:At.75440
ProteinModelPortal:Q9SIT3 PRIDE:Q9SIT3 EnsemblPlants:AT2G13640.1
GeneID:815849 KEGG:ath:AT2G13640 TAIR:At2g13640 PhylomeDB:Q9SIT3
ArrayExpress:Q9SIT3 Genevestigator:Q9SIT3 Uniprot:Q9SIT3
Length = 384
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/100 (37%), Positives = 48/100 (48%)
Query: 4 ELVELFXXXXXXXXXXXIDGVSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPL 63
E+V+LF GV SG PEVSRC+DAL L +T ++ +L L
Sbjct: 263 EMVKLFEAAKKAADVANAKGVLSGKPEVSRCIDALSLLMKINITPKPKEPRRMMDKLEGL 322
Query: 64 TKHPREKIQIVASNLLDIWKKIVIEETTRNKKNGSTGDKS 103
TKH KI VAS LL +W++ I E R K K+
Sbjct: 323 TKHKDRKICHVASALLHLWRQR-IREQERKKSVTKASSKT 361
>UNIPROTKB|F1MG39 [details] [associations]
symbol:F1MG39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:DAAA02006249 EMBL:DAAA02006250 IPI:IPI00693396
Ensembl:ENSBTAT00000055584 Uniprot:F1MG39
Length = 1150
Score = 145 (56.1 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 243 VAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEE 302
+A +E+ +F + G K KYRS++FN+RD +NP+L +V+ G++TP LV MS +
Sbjct: 574 IAAGIEAALFNLTQATNGRYKTKYRSLLFNLRDPRNPELFLKVVHGDITPHGLVRMSSVQ 633
Query: 303 MASDERQRQIENIKEKAL 320
+A E R + +++ L
Sbjct: 634 LAPQELARWRDQEEKRGL 651
>FB|FBgn0061362 [details] [associations]
symbol:CG33785 species:7227 "Drosophila melanogaster"
[GO:0006359 "regulation of transcription from RNA polymerase III
promoter" evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 EMBL:AE013599
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0009 InterPro:IPR019761
PROSITE:PS01030 KO:K03019 OMA:ITRKVNN GeneTree:ENSGT00550000075071
RefSeq:NP_001027443.1 UniGene:Dm.1509 ProteinModelPortal:A1ZBX4
SMR:A1ZBX4 IntAct:A1ZBX4 STRING:A1ZBX4 PaxDb:A1ZBX4
EnsemblMetazoa:FBtr0091786 GeneID:3772344 KEGG:dme:Dmel_CG33785
FlyBase:FBgn0061362 InParanoid:A1ZBX4 OrthoDB:EOG4Q2BXV
PhylomeDB:A1ZBX4 NextBio:853393 Uniprot:A1ZBX4
Length = 108
Score = 117 (46.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 328 EATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVN--CSKRWK 374
E +TD +C CG ++ + Q+QTRSADEPMTT+ C N C+ W+
Sbjct: 60 ENVDSTDA-ECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWR 107
>TAIR|locus:2035322 [details] [associations]
symbol:AT1G01210 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR006288
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
EMBL:CP002684 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
EMBL:AC023628 GO:GO:0003899 eggNOG:COG1594 InterPro:IPR019761
PROSITE:PS01030 HOGENOM:HOG000228131 KO:K03019 HSSP:Q56254
EMBL:BT008558 EMBL:BT008671 EMBL:AK229520 IPI:IPI00532164
PIR:C86142 RefSeq:NP_171629.1 UniGene:At.42660
ProteinModelPortal:Q9LNK0 SMR:Q9LNK0 IntAct:Q9LNK0 STRING:Q9LNK0
EnsemblPlants:AT1G01210.1 GeneID:839481 KEGG:ath:AT1G01210
TAIR:At1g01210 InParanoid:Q9LNK0 OMA:CGYEEAY PhylomeDB:Q9LNK0
ProtClustDB:CLSN2682844 ArrayExpress:Q9LNK0 Genevestigator:Q9LNK0
TIGRFAMs:TIGR01384 Uniprot:Q9LNK0
Length = 106
Score = 113 (44.8 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 28/74 (37%), Positives = 37/74 (50%)
Query: 309 QRQIENIKEKALFECQRGGEATATTDQFK--------CSRCGQRKCTYYQMQTRSADEPM 360
QRQ+E IK+K L ++ EA T D C RCG K + MQ RSADEP
Sbjct: 33 QRQVE-IKKKQLL-VKKSIEAVVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPE 90
Query: 361 TTYVTCVNCSKRWK 374
+ + C+ C W+
Sbjct: 91 SRFYRCLKCEFTWR 104
>UNIPROTKB|E2QZU0 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761
PROSITE:PS01030 CTD:51728 KO:K03019 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:AAEX03004698 RefSeq:XP_854405.2
Ensembl:ENSCAFT00000031350 GeneID:611625 KEGG:cfa:611625
Uniprot:E2QZU0
Length = 108
Score = 112 (44.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 310 RQIENIKEKALFECQR--GGEAT-ATTDQF--KCSRCGQRKCTYYQMQTRSADEPMTTYV 364
R++ N K L E GG A D C +C + + Q+QTRSADEPMTT+
Sbjct: 36 RKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFY 95
Query: 365 TCVN--CSKRWK 374
C N C RW+
Sbjct: 96 KCCNAQCGHRWR 107
>UNIPROTKB|Q9Y2Y1 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase III subunit
RPC10" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 GO:GO:0046872
GO:GO:0003677 EMBL:AE006462 GO:GO:0008270 GO:GO:0045087
GO:GO:0051607 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
EMBL:DQ431198 GO:GO:0006386 GO:GO:0006385 EMBL:Z69719
eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030 CTD:51728
HOGENOM:HOG000228131 HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P
EMBL:AF126531 EMBL:AF051316 EMBL:AF060223 EMBL:BC011932
IPI:IPI00008461 RefSeq:NP_057394.2 UniGene:Hs.632223
ProteinModelPortal:Q9Y2Y1 SMR:Q9Y2Y1 STRING:Q9Y2Y1
PhosphoSite:Q9Y2Y1 DMDM:116242768 PRIDE:Q9Y2Y1 DNASU:51728
Ensembl:ENST00000293860 GeneID:51728 KEGG:hsa:51728 UCSC:uc002cfi.2
GeneCards:GC16M000096 H-InvDB:HIX0012635 HGNC:HGNC:14121
HPA:HPA005891 MIM:606007 neXtProt:NX_Q9Y2Y1 PharmGKB:PA33521
InParanoid:Q9Y2Y1 OMA:ITRKVNN PhylomeDB:Q9Y2Y1 BindingDB:Q9Y2Y1
ChEMBL:CHEMBL2144 ChiTaRS:POLR3K GenomeRNAi:51728 NextBio:55788
Bgee:Q9Y2Y1 CleanEx:HS_POLR3K Genevestigator:Q9Y2Y1
GermOnline:ENSG00000161980 Uniprot:Q9Y2Y1
Length = 108
Score = 112 (44.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 310 RQIENIKEKALFECQR--GGEAT-ATTDQF--KCSRCGQRKCTYYQMQTRSADEPMTTYV 364
R++ N K L E GG A D C +C + + Q+QTRSADEPMTT+
Sbjct: 36 RKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFY 95
Query: 365 TCVN--CSKRWK 374
C N C RW+
Sbjct: 96 KCCNAQCGHRWR 107
>ZFIN|ZDB-GENE-040718-291 [details] [associations]
symbol:polr3k "polymerase (RNA) III (DNA directed)
polypeptide K" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
ZFIN:ZDB-GENE-040718-291 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:CU463855 EMBL:BC076249
IPI:IPI00483579 RefSeq:NP_001002553.1 UniGene:Dr.132213
STRING:Q6DGU0 Ensembl:ENSDART00000055129 GeneID:436826
KEGG:dre:436826 InParanoid:Q6DGU0 NextBio:20831258 Uniprot:Q6DGU0
Length = 108
Score = 112 (44.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 310 RQIENIKEKALFECQR--GGEAT-ATTDQFK--CSRCGQRKCTYYQMQTRSADEPMTTYV 364
R++ N K L E GG A D C +C + + Q+QTRSADEPMTT+
Sbjct: 36 RKVNNRKYPKLKEVDDVLGGSAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFY 95
Query: 365 TCVN--CSKRWK 374
C N C RW+
Sbjct: 96 KCCNIQCGHRWR 107
>UNIPROTKB|F1N3E8 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761 PROSITE:PS01030
IPI:IPI00686254 UniGene:Bt.6024 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:DAAA02057271
Ensembl:ENSBTAT00000026386 Uniprot:F1N3E8
Length = 108
Score = 111 (44.1 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 310 RQIENIKEKALFECQR--GGEAT-ATTDQFK--CSRCGQRKCTYYQMQTRSADEPMTTYV 364
R++ N K L E GG A D C +C + + Q+QTRSADEPMTT+
Sbjct: 36 RKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFY 95
Query: 365 TCVN--CSKRWK 374
C N C RW+
Sbjct: 96 KCCNAQCGHRWR 107
>UNIPROTKB|F2Z4X7 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761 PROSITE:PS01030
KO:K03019 OMA:ITRKVNN GeneTree:ENSGT00550000075071 EMBL:FP103025
RefSeq:XP_003124725.1 ProteinModelPortal:F2Z4X7 SMR:F2Z4X7
Ensembl:ENSSSCT00000008733 GeneID:100521261 KEGG:ssc:100521261
Uniprot:F2Z4X7
Length = 108
Score = 111 (44.1 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 310 RQIENIKEKALFECQR--GGEAT-ATTDQFK--CSRCGQRKCTYYQMQTRSADEPMTTYV 364
R++ N K L E GG A D C +C + + Q+QTRSADEPMTT+
Sbjct: 36 RKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFY 95
Query: 365 TCVN--CSKRWK 374
C N C RW+
Sbjct: 96 KCCNAQCGHRWR 107
>MGI|MGI:1914255 [details] [associations]
symbol:Polr3k "polymerase (RNA) III (DNA directed)
polypeptide K" species:10090 "Mus musculus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 MGI:MGI:1914255 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0003899 UniGene:Mm.271986 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
ChiTaRS:POLR3K EMBL:AK005152 EMBL:AK010875 EMBL:AK021353
EMBL:AK031110 IPI:IPI00133407 RefSeq:NP_080177.1
ProteinModelPortal:Q9CQZ7 SMR:Q9CQZ7 STRING:Q9CQZ7
PhosphoSite:Q9CQZ7 Ensembl:ENSMUST00000039551 GeneID:67005
KEGG:mmu:67005 GeneTree:ENSGT00550000075071 InParanoid:Q9CQZ7
NextBio:323282 Bgee:Q9CQZ7 CleanEx:MM_POLR3K Genevestigator:Q9CQZ7
GermOnline:ENSMUSG00000038628 Uniprot:Q9CQZ7
Length = 108
Score = 111 (44.1 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 310 RQIENIKEKALFECQR--GGEAT-ATTDQFK--CSRCGQRKCTYYQMQTRSADEPMTTYV 364
R++ N K L E GG A D C +C + + Q+QTRSADEPMTT+
Sbjct: 36 RKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFY 95
Query: 365 TCVN--CSKRWK 374
C N C RW+
Sbjct: 96 KCCNAQCGHRWR 107
>RGD|1303114 [details] [associations]
symbol:Znrd1 "zinc ribbon domain containing 1" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 RGD:1303114 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG OrthoDB:EOG45X7XM
InterPro:IPR019761 PROSITE:PS01030 EMBL:BX883052 IPI:IPI00422027
RefSeq:NP_001159772.1 RefSeq:NP_998732.1 UniGene:Rn.4312
ProteinModelPortal:Q6MFY5 STRING:Q6MFY5 PRIDE:Q6MFY5
Ensembl:ENSRNOT00000001012 GeneID:361784 KEGG:rno:361784
UCSC:RGD:1303114 InParanoid:Q6MFY5 NextBio:677596
Genevestigator:Q6MFY5 GermOnline:ENSRNOG00000000779 Uniprot:Q6MFY5
Length = 123
Score = 111 (44.1 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 326 GGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
G E+ +CSRCG YY Q RSADE T + TC+NC
Sbjct: 72 GPESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINC 115
>UNIPROTKB|Q5FVH1 [details] [associations]
symbol:Polr3k "DNA-directed RNA polymerase subunit"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 EMBL:CH474066 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:BC089990 IPI:IPI00368843
RefSeq:NP_001014281.1 UniGene:Rn.92563 SMR:Q5FVH1 STRING:Q5FVH1
Ensembl:ENSRNOT00000024096 GeneID:366277 KEGG:rno:366277
RGD:1587294 InParanoid:Q5FVH1 NextBio:689123 Genevestigator:Q5FVH1
Uniprot:Q5FVH1
Length = 108
Score = 111 (44.1 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 310 RQIENIKEKALFECQR--GGEAT-ATTDQFK--CSRCGQRKCTYYQMQTRSADEPMTTYV 364
R++ N K L E GG A D C +C + + Q+QTRSADEPMTT+
Sbjct: 36 RKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFY 95
Query: 365 TCVN--CSKRWK 374
C N C RW+
Sbjct: 96 KCCNAQCGHRWR 107
>POMBASE|SPCC645.13 [details] [associations]
symbol:SPCC645.13 "transcription elongation regulator
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISS;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0019787 "small conjugating protein ligase
activity" evidence=ISM] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
PomBase:SPCC645.13 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0019787
GO:GO:0034244 EMBL:AB027885 EMBL:AB027953 PIR:T41530
RefSeq:NP_588122.1 ProteinModelPortal:Q9Y7V2
EnsemblFungi:SPCC645.13.1 GeneID:2538700 KEGG:spo:SPCC645.13
OMA:ELESSEP OrthoDB:EOG4PRX19 NextBio:20799886 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 Uniprot:Q9Y7V2
Length = 721
Score = 136 (52.9 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 44/167 (26%), Positives = 76/167 (45%)
Query: 166 RGEAXXXXXXXXXXXQAP--SVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANA---- 219
RG AP S + S T K L D ++ +R+ +A A
Sbjct: 169 RGSVGTTATHTKRSKNAPKTSPKDASNETADQEKELSLHTSIDEIQNPVRKSVAKAWVSV 228
Query: 220 LSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAE-------KLKYRSIMFN 272
K+ +A E + + + +A+ +E +MF L +T + K+R++ FN
Sbjct: 229 FEKIIEKAKLEGVQGLEDLNSTSLALQLEHIMFMVLSYTTDHSLTPNNKYREKFRALRFN 288
Query: 273 IRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKA 319
+ D+KNP R RVL E++ LV +S EEMA+ + + E I++++
Sbjct: 289 LVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPDLKNLAEEIRQQS 335
>UNIPROTKB|E9PPM7 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 HGNC:HGNC:26338
ChiTaRS:SPOCD1 IPI:IPI00977290 ProteinModelPortal:E9PPM7 SMR:E9PPM7
Ensembl:ENST00000452755 ArrayExpress:E9PPM7 Bgee:E9PPM7
Uniprot:E9PPM7
Length = 639
Score = 135 (52.6 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 31/92 (33%), Positives = 55/92 (59%)
Query: 230 EIIDEVNACDPIR-VAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLG 288
E+ D V + + + +A +E+ +++ + G K KYRS++FN+RD +N DL +V+ G
Sbjct: 63 ELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHG 122
Query: 289 EVTPERLVTMSPEEMASDERQRQIENIKEKAL 320
+VTP LV MS ++A E R + +++ L
Sbjct: 123 DVTPYDLVRMSSMQLAPQELARWRDQEEKRGL 154
>TAIR|locus:2146415 [details] [associations]
symbol:AT5G27310 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005774 "vacuolar membrane" evidence=IDA]
InterPro:IPR003617 InterPro:IPR017923 PROSITE:PS51319 SMART:SM00509
GO:GO:0005634 GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0006351 EMBL:AC007123 SUPFAM:SSF47676
ProtClustDB:CLSN2683344 HOGENOM:HOG000124797 IPI:IPI00527045
RefSeq:NP_198083.1 UniGene:At.55034 ProteinModelPortal:Q3E914
EnsemblPlants:AT5G27310.1 GeneID:832789 KEGG:ath:AT5G27310
TAIR:At5g27310 eggNOG:NOG277035 PhylomeDB:Q3E914
Genevestigator:Q3E914 Uniprot:Q3E914
Length = 370
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 35/100 (35%), Positives = 46/100 (46%)
Query: 4 ELVELFXXXXXXXXXXXIDGVSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPL 63
E+V+LF GV SG PE SRC++AL L +T + +L L
Sbjct: 263 EMVKLFEAAKKAADVANAKGVLSGKPEASRCINALSLLMKINITPKPKEPRSMMDKLEGL 322
Query: 64 TKHPREKIQIVASNLLDIWKKIVIEETTRNKKNGSTGDKS 103
TKH KI VAS LL +W++ I E R K K+
Sbjct: 323 TKHKDRKICHVASALLHLWRQR-IREQERKKSVTKASSKN 361
>UNIPROTKB|Q6ZMY3 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IDA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 GO:GO:0010923
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
PROSITE:PS50917 EMBL:AK058077 EMBL:AK091016 EMBL:AK096192
EMBL:AK097227 EMBL:AK131447 EMBL:BC039870 EMBL:BC114430
IPI:IPI00478771 IPI:IPI00827924 IPI:IPI00845378 IPI:IPI00845481
IPI:IPI00845517 RefSeq:NP_653170.3 UniGene:Hs.62604
ProteinModelPortal:Q6ZMY3 SMR:Q6ZMY3 IntAct:Q6ZMY3 DMDM:74749560
PaxDb:Q6ZMY3 PRIDE:Q6ZMY3 Ensembl:ENST00000257100
Ensembl:ENST00000360482 Ensembl:ENST00000533231 GeneID:90853
KEGG:hsa:90853 UCSC:uc001bts.1 UCSC:uc001btu.3 UCSC:uc001btv.3
UCSC:uc001btw.1 CTD:90853 GeneCards:GC01M032256 H-InvDB:HIX0018138
HGNC:HGNC:26338 HPA:HPA031713 neXtProt:NX_Q6ZMY3
PharmGKB:PA134930231 eggNOG:NOG280980 InParanoid:Q6ZMY3 OMA:PKDTGSG
PhylomeDB:Q6ZMY3 ChiTaRS:SPOCD1 GenomeRNAi:90853 NextBio:77002
ArrayExpress:Q6ZMY3 Bgee:Q6ZMY3 CleanEx:HS_SPOCD1
Genevestigator:Q6ZMY3 Uniprot:Q6ZMY3
Length = 1216
Score = 139 (54.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 33/110 (30%), Positives = 62/110 (56%)
Query: 212 IRELLANALSKVTSEADEEIIDEVNACDPIR-VAVSVESVMFEKLGRSTGAEKLKYRSIM 270
+R + ++ +V E+ D V + + + +A +E+ +++ + G K KYRS++
Sbjct: 608 VRGTVVRSMQEVLWTRLRELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLL 667
Query: 271 FNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKAL 320
FN+RD +N DL +V+ G+VTP LV MS ++A E R + +++ L
Sbjct: 668 FNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQLAPQELARWRDQEEKRGL 717
Score = 42 (19.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 181 QAPSVRKPSQGTIATPKLTQLIKCN 205
Q PSV P+QG T K Q+ C+
Sbjct: 103 QLPSV--PTQGRALTSKRLQVSLCD 125
>CGD|CAL0006382 [details] [associations]
symbol:RPA12 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
CGD:CAL0006382 GO:GO:0005634 EMBL:AACQ01000095 EMBL:AACQ01000096
GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 RefSeq:XP_714814.1
RefSeq:XP_714876.1 ProteinModelPortal:Q59Z13 STRING:Q59Z13
GeneID:3643477 GeneID:3643566 KEGG:cal:CaO19.2287
KEGG:cal:CaO19.9827 Uniprot:Q59Z13
Length = 123
Score = 107 (42.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 294 RLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQT 353
++VT S ++ A + + ++ + +L + + AT KC +CG + Y+ +Q
Sbjct: 44 KVVTKSSDD-AFPSKLKSARSVVKTSLKKDELDEGATIKE---KCPKCGNEEMQYHTLQL 99
Query: 354 RSADEPMTTYVTCVNCSKRWK 374
RSADE T + TC NC R++
Sbjct: 100 RSADEGATVFYTCTNCGYRFR 120
>UNIPROTKB|Q2M2S7 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase III subunit
RPC10" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 GO:GO:0051607 GO:GO:0003899
eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030 EMBL:BC111667
IPI:IPI00686254 RefSeq:NP_001040082.1 UniGene:Bt.6024
ProteinModelPortal:Q2M2S7 STRING:Q2M2S7 GeneID:618296
KEGG:bta:618296 CTD:51728 HOGENOM:HOG000228131 HOVERGEN:HBG055716
InParanoid:Q2M2S7 KO:K03019 OrthoDB:EOG44BB3P NextBio:20901107
Uniprot:Q2M2S7
Length = 108
Score = 107 (42.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 310 RQIENIKEKALFEC--QRGGEAT-ATTDQFK--CSRCGQRKCTYYQMQTRSADEPMTTYV 364
R++ N K L E + GG A D C +C + + Q+QTR ADEPMTT+
Sbjct: 36 RKVTNRKYPKLKEVDDELGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFY 95
Query: 365 TCVN--CSKRWK 374
C N C RW+
Sbjct: 96 KCCNAQCGHRWR 107
>DICTYBASE|DDB_G0278963 [details] [associations]
symbol:DDB_G0278963 species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249
dictyBase:DDB_G0278963 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
EMBL:AAFI02000024 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 SUPFAM:SSF46942 eggNOG:NOG319666
RefSeq:XP_641903.1 EnsemblProtists:DDB0220593 GeneID:8621668
KEGG:ddi:DDB_G0278963 InParanoid:Q54XU3 Uniprot:Q54XU3
Length = 1334
Score = 135 (52.6 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 60/261 (22%), Positives = 104/261 (39%)
Query: 75 ASNLLDIWKKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKI--DKVQKTS--AVKVEK 130
+ NL DI E + N NG K S+ + +S K+ DKV S +
Sbjct: 417 SKNLYDISPSK--EHLSTNTNNGINHSKKSLDDTKILSNSQKLKNDKVNSLSLSSSSSSS 474
Query: 131 VSTAETV---KVEKTGSVSRSETVQVEKKE------TNGDSVMDRGEAXXXXXXXXXXXQ 181
V T ++ T S S + T +K TN ++ +
Sbjct: 475 VQTQTSILPSSATPTPSTSANNTPSQKKDSLYSFNYTNSNTSSSSSSSSSSSSALSSSSA 534
Query: 182 APSVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPI 241
S + T T T I+ ++ +K R N ++K + +E+
Sbjct: 535 LSSSSSSTATTTTTTNTTSTIQDDNEQCEKERRGAFNLINKALLIGSCHLYEEIKV---- 590
Query: 242 RVAVSVESVMFEKLGRSTGAEKLK--YRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMS 299
+A +E+ +F S K K RSI +NI++ NP L++R++ +VTPE L
Sbjct: 591 -IAKEIETELFNHF-YSLDKRKYKERVRSIEYNIKN--NPSLKERIITKKVTPEELKNFD 646
Query: 300 PEEMASDERQRQIENIKEKAL 320
+++A+ ER + ++E A+
Sbjct: 647 IQDLATKERAEERRELEEMAV 667
>UNIPROTKB|H0YF26 [details] [associations]
symbol:TCEANC "Transcription elongation factor A N-terminal
and central domain-containing protein" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR003618
InterPro:IPR016492 Pfam:PF07500 PIRSF:PIRSF006704 PROSITE:PS51321
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0032784 EMBL:AC079383 HGNC:HGNC:28277 Ensembl:ENST00000467590
Uniprot:H0YF26
Length = 272
Score = 124 (48.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 47/187 (25%), Positives = 81/187 (43%)
Query: 199 TQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRS 258
++L+ R K ELL AL+ +S D+ D A +E +F ++
Sbjct: 86 SELLDPTTPMRTKCIELLYAALT--SSSTDQPKADLWQ-----NFAREIEEHVFTLYSKN 138
Query: 259 TGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEK 318
K RS + N+++ +N L++ +L G +P M+ EMA+ E ++ + E
Sbjct: 139 IKKYKTCIRSKVANLKNPRNSHLQQNLLSGTTSPREFAEMTVMEMANKELKQLRASYTES 198
Query: 319 ALFECQRGGEATAT-TDQFKCSRCGQRKC--------TYYQ---MQTRSADEPMTTYVTC 366
+ E T T++ KC RC + C T + ++ + DE M TYV C
Sbjct: 199 CIQEHYLPQVIDGTQTNKIKCRRCEKYNCKVTVIDRGTLFLPSWVRNSNPDEQMMTYVIC 258
Query: 367 VNCSKRW 373
C ++W
Sbjct: 259 NECGEQW 265
>POMBASE|SPAC22A12.05 [details] [associations]
symbol:rpc11 "DNA-directed RNA polymerase III complex
subunit Rpc11" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=ISM] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006384
"transcription initiation from RNA polymerase III promoter"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0042779 "tRNA 3'-trailer cleavage" evidence=IGI;IMP]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 PomBase:SPAC22A12.05
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0005666 GO:GO:0003899
GO:GO:0042779 eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030
HOGENOM:HOG000228131 KO:K03019 EMBL:AF027823 EMBL:AF126532
PIR:T38145 RefSeq:NP_593235.1 ProteinModelPortal:O13896
DIP:DIP-29537N STRING:O13896 EnsemblFungi:SPAC22A12.05.1
GeneID:2541521 KEGG:spo:SPAC22A12.05 OMA:HVEGNAL OrthoDB:EOG469V4B
NextBio:20802619 GO:GO:0006384 Uniprot:O13896
Length = 109
Score = 105 (42.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 309 QRQIENIK--EKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTC 366
Q++++++ E+A FE + E T ++C + ++Q+Q RSADEPM+T+ C
Sbjct: 46 QKEVDDVLGGEEA-FESNQQTEVTCEN-----TKCDNNRAYFFQLQIRSADEPMSTFYRC 99
Query: 367 VNCSKRWK 374
C +W+
Sbjct: 100 TKCKFQWR 107
>UNIPROTKB|A0JNK7 [details] [associations]
symbol:LOC504389 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
GeneTree:ENSGT00390000017794 CTD:170082 HOGENOM:HOG000234470
OMA:LKKKAKC OrthoDB:EOG4T1HMR EMBL:DAAA02074911 EMBL:BC126748
IPI:IPI00883437 RefSeq:NP_001019643.2 UniGene:Bt.30852
Ensembl:ENSBTAT00000023859 GeneID:504389 KEGG:bta:504389
HOVERGEN:HBG102368 InParanoid:A0JNK7 NextBio:20866636
Uniprot:A0JNK7
Length = 378
Score = 126 (49.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 39/143 (27%), Positives = 66/143 (46%)
Query: 243 VAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEE 302
+A +E+ +F ++ K RS + N+++ +N L++ +L G ++P M+ E
Sbjct: 228 LAQEIEAHVFALHPKNLQKYKTCIRSKVANLKNPRNSHLQQNLLSGTMSPREFAKMTAME 287
Query: 303 MASDERQRQIENIKEKALFECQRGGEATAT-TDQFKCSRCGQRKCT---------YYQMQ 352
MAS E ++ + + AL E T T + KC RC + C +
Sbjct: 288 MASQELKQLRASYTKSALREHYLPQVVEGTPTRKIKCERCEKFNCQVTVIPRGTLFLPSW 347
Query: 353 TRSA--DEPMTTYVTCVNCSKRW 373
R+A DE M TYV C C ++W
Sbjct: 348 VRNAGPDEEMMTYVICNECGEQW 370
>UNIPROTKB|G5EHE0 [details] [associations]
symbol:MGCH7_ch7g875 "DNA-directed RNA polymerase subunit"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS51133 SMART:SM00440 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:CM000230 EMBL:CM001237 GO:GO:0003899 KO:K03019
RefSeq:XP_003720603.1 ProteinModelPortal:G5EHE0
EnsemblFungi:MGG_03072T0 GeneID:2682625 KEGG:mgr:MGG_03072
Uniprot:G5EHE0
Length = 110
Score = 104 (41.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
Q C + ++Q+Q RSADEPMT++ C+ C RW+
Sbjct: 69 QCPADNCDGEEAAFFQVQIRSADEPMTSFYKCMTCGHRWR 108
>UNIPROTKB|Q8N8B7 [details] [associations]
symbol:TCEANC "Transcription elongation factor A N-terminal
and central domain-containing protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 HSSP:P23193 EMBL:AK097032
EMBL:AK315599 EMBL:DC344354 EMBL:AC079383 EMBL:BC020095
IPI:IPI00856085 IPI:IPI00970906 RefSeq:NP_689847.2
UniGene:Hs.222855 UniGene:Hs.737398 ProteinModelPortal:Q8N8B7
SMR:Q8N8B7 IntAct:Q8N8B7 MINT:MINT-1468129 STRING:Q8N8B7
PhosphoSite:Q8N8B7 DMDM:117949797 PRIDE:Q8N8B7
Ensembl:ENST00000314720 Ensembl:ENST00000380600
Ensembl:ENST00000544987 Ensembl:ENST00000545566 GeneID:170082
KEGG:hsa:170082 UCSC:uc004cvk.2 UCSC:uc010neg.1 CTD:170082
GeneCards:GC0XP013671 HGNC:HGNC:28277 HPA:HPA001013
neXtProt:NX_Q8N8B7 eggNOG:NOG280689 HOGENOM:HOG000234470
InParanoid:Q8N8B7 OMA:LKKKAKC OrthoDB:EOG4T1HMR PhylomeDB:Q8N8B7
GenomeRNAi:170082 NextBio:88870 Bgee:Q8N8B7 Genevestigator:Q8N8B7
GermOnline:ENSG00000176896 Uniprot:Q8N8B7
Length = 351
Score = 124 (48.7 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 47/187 (25%), Positives = 81/187 (43%)
Query: 199 TQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRS 258
++L+ R K ELL AL+ +S D+ D A +E +F ++
Sbjct: 164 SELLDPTTPMRTKCIELLYAALT--SSSTDQPKADLWQ-----NFAREIEEHVFTLYSKN 216
Query: 259 TGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEK 318
K RS + N+++ +N L++ +L G +P M+ EMA+ E ++ + E
Sbjct: 217 IKKYKTCIRSKVANLKNPRNSHLQQNLLSGTTSPREFAEMTVMEMANKELKQLRASYTES 276
Query: 319 ALFECQRGGEATAT-TDQFKCSRCGQRKC--------TYYQ---MQTRSADEPMTTYVTC 366
+ E T T++ KC RC + C T + ++ + DE M TYV C
Sbjct: 277 CIQEHYLPQVIDGTQTNKIKCRRCEKYNCKVTVIDRGTLFLPSWVRNSNPDEQMMTYVIC 336
Query: 367 VNCSKRW 373
C ++W
Sbjct: 337 NECGEQW 343
>TAIR|locus:2120527 [details] [associations]
symbol:AT4G07950 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR006288 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 EMBL:AC006266 EMBL:AL161508 GO:GO:0003899
InterPro:IPR019761 PROSITE:PS01030 KO:K03019 HSSP:Q56254
ProtClustDB:CLSN2682844 TIGRFAMs:TIGR01384 EMBL:AY072451
EMBL:BT000318 IPI:IPI00516216 PIR:A85078 RefSeq:NP_192535.1
UniGene:At.33786 ProteinModelPortal:Q9ZQC0 SMR:Q9ZQC0 IntAct:Q9ZQC0
STRING:Q9ZQC0 EnsemblPlants:AT4G07950.1 GeneID:826299
KEGG:ath:AT4G07950 TAIR:At4g07950 InParanoid:Q9ZQC0 OMA:QMQIRSA
PhylomeDB:Q9ZQC0 Genevestigator:Q9ZQC0 Uniprot:Q9ZQC0
Length = 106
Score = 103 (41.3 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 330 TATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
TA + C RCG K + MQ RSADEP + + C+ C W+
Sbjct: 60 TAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWR 104
>TAIR|locus:2051139 [details] [associations]
symbol:AT2G33300 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003617 InterPro:IPR017923 PROSITE:PS51319
SMART:SM00509 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0006351 GO:GO:0003746 UniGene:At.10797
ProtClustDB:CLSN2683344 EMBL:DQ446593 IPI:IPI00546998
RefSeq:NP_180888.2 ProteinModelPortal:Q1PEX4 SMR:Q1PEX4
PRIDE:Q1PEX4 EnsemblPlants:AT2G33300.1 GeneID:817893
KEGG:ath:AT2G33300 TAIR:At2g33300 HOGENOM:HOG000124797
PhylomeDB:Q1PEX4 Genevestigator:Q1PEX4 Uniprot:Q1PEX4
Length = 276
Score = 121 (47.7 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 2 EQELVELFXXXXXXXXXXXIDGVSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLR 61
+++L+ELF G+ + E S CVD L L FP++ + + ++ RL
Sbjct: 179 DKDLLELFEIAKKSADFANAKGILASEVETSMCVDTLALLLEFPISARAMETRKLMVRLE 238
Query: 62 PLTKHPREKIQIVASNLLDIWKKIVIEETTRNKK 95
LTKH KI S LL W++ + ++ R +
Sbjct: 239 NLTKHKNRKICNSVSKLLQCWRQSIRDQQLRESR 272
>UNIPROTKB|E2QWP2 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 OMA:LKKKAKC EMBL:AAEX03026149
Ensembl:ENSCAFT00000018657 Uniprot:E2QWP2
Length = 351
Score = 123 (48.4 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 38/142 (26%), Positives = 64/142 (45%)
Query: 244 AVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEM 303
A +E +F ++ K RS + N+R+ KN L++ +L G ++P M+ EM
Sbjct: 202 AREIEEHIFTLHSKNLKKYKTCVRSKVANLRNPKNSHLQQNLLSGTMSPREFAKMTVMEM 261
Query: 304 ASDERQRQIENIKEKALFECQRGGEATAT-TDQFKCSRCGQRKC--------TYYQ---M 351
A+ E ++ + E + E T T + KC RC + C T + +
Sbjct: 262 ANKELKQLRASYTESCIQEHHLPQAIEGTHTRKIKCRRCEKFNCKVTVIARGTLFLPSWV 321
Query: 352 QTRSADEPMTTYVTCVNCSKRW 373
+ + DE M TYV C C ++W
Sbjct: 322 RNSNPDEEMMTYVICNECGEQW 343
>UNIPROTKB|F1LWI4 [details] [associations]
symbol:F1LWI4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 IPI:IPI00781224
Ensembl:ENSRNOT00000056304 Uniprot:F1LWI4
Length = 190
Score = 116 (45.9 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 41/123 (33%), Positives = 62/123 (50%)
Query: 243 VAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNP--DLRKRVLLGEVTPERLVTMS 299
+A +E+ +F L + T K KYR+++FN+RD +NP DL +V +VTP+ LV MS
Sbjct: 19 IAEGIEAALFH-LTQDTNLRYKSKYRNLLFNLRDPRNPPQDLFLKVAHCDVTPKDLVQMS 77
Query: 300 PEEMASDE--RQRQIENIKEKAL-FECQRGGEATA---TTDQFKCSRCGQ--RKCTYYQM 351
++A E R R E +E + EC T TTD + C + CT +
Sbjct: 78 SIQLAPKELSRWRDQEKRREPMVPRECSLQALTTPLEDTTDWHQHHLCDSSCQICTDQKS 137
Query: 352 QTR 354
T+
Sbjct: 138 STK 140
>FB|FBgn0004855 [details] [associations]
symbol:RpII15 "RNA polymerase II 15kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0007095 "mitotic G2 DNA
damage checkpoint" evidence=IGI] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
EMBL:AE014297 GO:GO:0007095 GO:GO:0007067 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG1594 InterPro:IPR019761
PROSITE:PS01030 KO:K03017 EMBL:S88139 EMBL:S66940 PIR:S39445
RefSeq:NP_001247099.1 RefSeq:NP_731898.1 ProteinModelPortal:P36958
SMR:P36958 IntAct:P36958 STRING:P36958 PaxDb:P36958
EnsemblMetazoa:FBtr0082925 EnsemblMetazoa:FBtr0309995 GeneID:41741
KEGG:dme:Dmel_CG3284 CTD:41741 FlyBase:FBgn0004855
GeneTree:ENSGT00550000075063 InParanoid:P36958 OMA:MHEIDEL
OrthoDB:EOG4D51F3 PhylomeDB:P36958 GenomeRNAi:41741 NextBio:825340
Bgee:P36958 GermOnline:CG3284 Uniprot:P36958
Length = 129
Score = 102 (41.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVN--CSKRW 373
T+ C +C R+ ++Q QTR A+E M Y C N C+ RW
Sbjct: 85 TEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
>GENEDB_PFALCIPARUM|PFB0290c [details] [associations]
symbol:PFB0290c "transcription factor, putative"
species:5833 "Plasmodium falciparum" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0008270 GO:GO:0003700 GO:GO:0003676 GO:GO:0006383
EMBL:AE001362 GO:GO:0005666 GO:GO:0003899 HOGENOM:HOG000228131
KO:K03019 OMA:ITRKVNN HSSP:Q56254 PIR:E71618 RefSeq:XP_001349576.1
ProteinModelPortal:O96159 EnsemblProtists:PFB0290c:mRNA
GeneID:812658 KEGG:pfa:PFB0290c EuPathDB:PlasmoDB:PF3D7_0206600
ProtClustDB:CLSZ2432907 Uniprot:O96159
Length = 106
Score = 102 (41.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
Q C +C + +Y +Q RSADEP T + CV C+ WK
Sbjct: 66 QAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWK 105
>UNIPROTKB|Q1RMP0 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase I subunit RPA12"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:BC114799
IPI:IPI00708048 RefSeq:NP_001039865.1 RefSeq:XP_003583930.1
UniGene:Bt.1771 ProteinModelPortal:Q1RMP0 STRING:Q1RMP0
Ensembl:ENSBTAT00000045075 GeneID:100849450 GeneID:535288
KEGG:bta:100849450 KEGG:bta:535288 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 InParanoid:Q1RMP0 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM NextBio:20876684 ArrayExpress:Q1RMP0
InterPro:IPR019761 PROSITE:PS01030 Uniprot:Q1RMP0
Length = 123
Score = 102 (41.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 324 QRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
+ G E +CSRCG Y+ Q RSADE T + TC NC
Sbjct: 70 EEGPEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>UNIPROTKB|O96159 [details] [associations]
symbol:PFB0290c "DNA-directed RNA polymerase subunit"
species:36329 "Plasmodium falciparum 3D7" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISS] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 GO:GO:0008270 GO:GO:0003700
GO:GO:0003676 GO:GO:0006383 EMBL:AE001362 GO:GO:0005666
GO:GO:0003899 HOGENOM:HOG000228131 KO:K03019 OMA:ITRKVNN
HSSP:Q56254 PIR:E71618 RefSeq:XP_001349576.1
ProteinModelPortal:O96159 EnsemblProtists:PFB0290c:mRNA
GeneID:812658 KEGG:pfa:PFB0290c EuPathDB:PlasmoDB:PF3D7_0206600
ProtClustDB:CLSZ2432907 Uniprot:O96159
Length = 106
Score = 102 (41.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
Q C +C + +Y +Q RSADEP T + CV C+ WK
Sbjct: 66 QAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWK 105
>TAIR|locus:2092185 [details] [associations]
symbol:AT3G25940 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB023041
GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 HSSP:P23193
EMBL:AY084292 EMBL:BT024567 IPI:IPI00539114 RefSeq:NP_566786.1
UniGene:At.37301 ProteinModelPortal:Q9LU97 SMR:Q9LU97 IntAct:Q9LU97
STRING:Q9LU97 PaxDb:Q9LU97 PRIDE:Q9LU97 EnsemblPlants:AT3G25940.1
GeneID:822191 KEGG:ath:AT3G25940 TAIR:At3g25940 InParanoid:Q9LU97
OMA:EINKKCE PhylomeDB:Q9LU97 ProtClustDB:CLSN2688785
Genevestigator:Q9LU97 Uniprot:Q9LU97
Length = 119
Score = 102 (41.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 319 ALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373
+LF + EA + C +C + Y QTRSADE TTY TC NC+ R+
Sbjct: 62 SLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRF 116
>TAIR|locus:2046520 [details] [associations]
symbol:AT2G33090 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003617 InterPro:IPR017923 PROSITE:PS51319
SMART:SM00509 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0006351 GO:GO:0003746 EMBL:AC002334 EMBL:DQ446592
IPI:IPI00525974 PIR:C84741 RefSeq:NP_180868.1 UniGene:At.66298
ProteinModelPortal:O49324 EnsemblPlants:AT2G33090.1 GeneID:817871
KEGG:ath:AT2G33090 TAIR:At2g33090 OMA:SARDMET PhylomeDB:O49324
ProtClustDB:CLSN2683344 Genevestigator:O49324 Uniprot:O49324
Length = 248
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 2 EQELVELFXXXXXXXXXXXIDGVSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLR 61
+ + +ELF G+ + E S CVD L L FP++ + + ++ RL
Sbjct: 151 DTDTLELFEIAKKSADFANAKGILASEVETSMCVDTLTLLLEFPISARDMETRKLMVRLE 210
Query: 62 PLTKHPREKIQIVASNLLDIWKKIVIEETTRNKK 95
LTKH KI AS LL W++ + E+ R +
Sbjct: 211 HLTKHKNRKICNSASKLLQCWRESIREQQLRESR 244
>WB|WBGene00022309 [details] [associations]
symbol:rpc-11 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 SMART:SM00661 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228131 KO:K03019 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:FO081581 HSSP:Q56254
RefSeq:NP_500076.1 ProteinModelPortal:Q9N4B7 SMR:Q9N4B7
IntAct:Q9N4B7 STRING:Q9N4B7 EnsemblMetazoa:Y77E11A.6 GeneID:176950
KEGG:cel:CELE_Y77E11A.6 UCSC:Y77E11A.6 CTD:176950
WormBase:Y77E11A.6 InParanoid:Q9N4B7 NextBio:894706 Uniprot:Q9N4B7
Length = 108
Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 326 GGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVN--CSKRWK 374
G A A C C + + Q+QTRSADEP T + C + C+ RWK
Sbjct: 57 GAWANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWK 107
>UNIPROTKB|Q9P1U0 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase I subunit RPA12"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=TAS]
InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0005730 GO:GO:0046872 GO:GO:0006139 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:AL669914
EMBL:AL671859 EMBL:AL845439 EMBL:BX088647 CTD:30834 eggNOG:COG1594
HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM InterPro:IPR019761 PROSITE:PS01030 EMBL:AF024617
EMBL:AF230337 EMBL:AF230338 EMBL:CR457109 EMBL:BC010898
EMBL:BC050608 IPI:IPI00395539 RefSeq:NP_055411.1 RefSeq:NP_740753.1
UniGene:Hs.57813 ProteinModelPortal:Q9P1U0 SMR:Q9P1U0 IntAct:Q9P1U0
MINT:MINT-1435192 STRING:Q9P1U0 DMDM:71649339 PaxDb:Q9P1U0
PeptideAtlas:Q9P1U0 PRIDE:Q9P1U0 DNASU:30834
Ensembl:ENST00000332435 Ensembl:ENST00000359374
Ensembl:ENST00000376782 Ensembl:ENST00000376785
Ensembl:ENST00000383613 Ensembl:ENST00000400659
Ensembl:ENST00000400660 Ensembl:ENST00000400662
Ensembl:ENST00000412396 Ensembl:ENST00000417275
Ensembl:ENST00000417738 Ensembl:ENST00000420100
Ensembl:ENST00000428913 Ensembl:ENST00000429558
Ensembl:ENST00000431032 Ensembl:ENST00000431416
Ensembl:ENST00000432227 Ensembl:ENST00000432545
Ensembl:ENST00000432904 Ensembl:ENST00000433264
Ensembl:ENST00000437373 Ensembl:ENST00000437507
Ensembl:ENST00000441251 Ensembl:ENST00000442585
Ensembl:ENST00000443142 Ensembl:ENST00000443494
Ensembl:ENST00000444027 Ensembl:ENST00000444794
Ensembl:ENST00000446493 Ensembl:ENST00000451875
Ensembl:ENST00000453694 Ensembl:ENST00000455948 GeneID:30834
KEGG:hsa:30834 UCSC:uc003noz.3 GeneCards:GC06P030026
HGNC:HGNC:13182 MIM:607525 neXtProt:NX_Q9P1U0 PharmGKB:PA37754
InParanoid:Q9P1U0 PhylomeDB:Q9P1U0 GenomeRNAi:30834 NextBio:52944
ArrayExpress:Q9P1U0 Bgee:Q9P1U0 CleanEx:HS_ZNRD1
Genevestigator:Q9P1U0 GermOnline:ENSG00000066379 Uniprot:Q9P1U0
Length = 126
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 324 QRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
+ G E +C RCG Y+ Q RSADE T + TC NC
Sbjct: 73 EEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>MGI|MGI:1913386 [details] [associations]
symbol:Znrd1 "zinc ribbon domain containing, 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Reactome:REACT_78136 InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 MGI:MGI:1913386 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 GO:GO:0003676
GO:GO:0003899 CTD:30834 eggNOG:COG1594 GeneTree:ENSGT00390000008126
HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM InterPro:IPR019761 PROSITE:PS01030 EMBL:AF230339
EMBL:AF230340 EMBL:AK003714 EMBL:BC043016 EMBL:AK005976
IPI:IPI00133128 RefSeq:NP_075651.1 UniGene:Mm.486229
ProteinModelPortal:Q791N7 SMR:Q791N7 STRING:Q791N7 PRIDE:Q791N7
Ensembl:ENSMUST00000113669 Ensembl:ENSMUST00000172518 GeneID:66136
KEGG:mmu:66136 UCSC:uc008clo.1 InParanoid:Q791N7
Reactome:REACT_86751 NextBio:320734 Bgee:Q791N7 CleanEx:MM_ZNRD1
Genevestigator:Q791N7 GermOnline:ENSMUSG00000036315 Uniprot:Q791N7
Length = 123
Score = 99 (39.9 bits), Expect = 0.00016, P = 0.00016
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
+C RCG Y+ Q RSADE T + TC+NC
Sbjct: 83 RCPRCGHEGMAYHTRQMRSADEGQTVFYTCINC 115
>MGI|MGI:2685236 [details] [associations]
symbol:Tceanc "transcription elongation factor A (SII)
N-terminal and central domain containing" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51319 PROSITE:PS51321 MGI:MGI:2685236
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
CTD:170082 eggNOG:NOG280689 HOGENOM:HOG000234470 OrthoDB:EOG4T1HMR
EMBL:AK041519 EMBL:AK140929 EMBL:BC067008 IPI:IPI00653939
RefSeq:NP_001007578.2 UniGene:Mm.336318 ProteinModelPortal:Q3US16
SMR:Q3US16 PhosphoSite:Q3US16 PRIDE:Q3US16
Ensembl:ENSMUST00000112188 Ensembl:ENSMUST00000180322 GeneID:245695
KEGG:mmu:245695 InParanoid:Q3US16 NextBio:386930 Bgee:Q3US16
CleanEx:MM_A630018P17RIK Genevestigator:Q3US16 Uniprot:Q3US16
Length = 359
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 63/270 (23%), Positives = 109/270 (40%)
Query: 119 KVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAXXXXXXXXX 178
KV T+A K E + ++ V ++T S SE + + + D +
Sbjct: 91 KVLHTNANKEESAAVSQDVSQDETSGSSHSEIMGL-CSSLSRLLPQDAAKPAAAIGSESS 149
Query: 179 XXQAPSVRKPSQG--TIATPKLTQLIKCN-DSSRDKIRELLANALSKVTSEADEEIIDEV 235
Q +G + T K + + + S R K ELL AL+ ++ E I +
Sbjct: 150 TAQMEINEGYLKGDDSECTRKSSGVFQGTLVSVRSKCVELLYTALASSCTDHTEVHIWQ- 208
Query: 236 NACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERL 295
+A +E +F + K RS + N+++ +N L++ L G ++
Sbjct: 209 ------NLAREIEEHIFTLHSNNIKKYKTSIRSKVANLKNPRNFHLQQNFLSGTMSAREF 262
Query: 296 VTMSPEEMASDERQRQIENIKEKALFE-CQRGGEATATTDQFKCSRCGQRKC-------- 346
MS +MAS E ++ + E ++ E C T++ KC RC + C
Sbjct: 263 AEMSVLDMASQELKQLRASYTESSIQEHCLPQSVDGTWTNKIKCRRCDKYNCKVTVIARG 322
Query: 347 TYYQ---MQTRSADEPMTTYVTCVNCSKRW 373
T + +Q + DE MT YV C C ++W
Sbjct: 323 TLFLPSWVQNSNPDEQMT-YVICNECGEQW 351
>TAIR|locus:2042082 [details] [associations]
symbol:AT2G27780 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003617 InterPro:IPR017923 PROSITE:PS51319
SMART:SM00509 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006351 EMBL:AC005824 SUPFAM:SSF47676
ProtClustDB:CLSN2683344 HOGENOM:HOG000124797 IPI:IPI00531362
PIR:H84676 RefSeq:NP_180346.1 UniGene:At.66255
ProteinModelPortal:Q9ZUX9 EnsemblPlants:AT2G27780.1 GeneID:817325
KEGG:ath:AT2G27780 TAIR:At2g27780 OMA:KMRVRIA PhylomeDB:Q9ZUX9
Genevestigator:Q9ZUX9 Uniprot:Q9ZUX9
Length = 368
Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
Identities = 34/100 (34%), Positives = 45/100 (45%)
Query: 4 ELVELFXXXXXXXXXXXIDGVSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPL 63
E+V+LF GV SG E SRC+DAL L +T ++ +L L
Sbjct: 261 EMVKLFEAAKKAADVANAKGVLSGKAEASRCIDALSVLMKINITPKPKEPRRMMDKLEGL 320
Query: 64 TKHPREKIQIVASNLLDIWKKIVIEETTRNKKNGSTGDKS 103
TKH I VAS LL +W++ I E R K K+
Sbjct: 321 TKHKDRMICHVASALLHLWRQR-IREQERKKSVTKASSKN 359
>UNIPROTKB|F1P1E3 [details] [associations]
symbol:TCEB3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 GO:GO:0016021
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
Gene3D:1.20.930.10 SUPFAM:SSF47676 GeneTree:ENSGT00390000002428
EMBL:AADN02043724 IPI:IPI00586665 Ensembl:ENSGALT00000034951
OMA:IVENIKH Uniprot:F1P1E3
Length = 779
Score = 121 (47.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 26 SGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKI 85
+G + + + +LKRL P+T D+LV T VGK + L KH E + A NL+ WKK+
Sbjct: 17 AGSADPKKLLKSLKRLSELPITVDILVETGVGKTVNSLRKH--ELVGDFAKNLVARWKKL 74
Query: 86 V--IEETTRNKKNGSTGD 101
V +E RN + D
Sbjct: 75 VPVSQEADRNNLDSEDCD 92
Score = 47 (21.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 109 VVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKE 157
V KP +K Q S K ST + K+ S R+ + EKK+
Sbjct: 432 VAKPSVSAGEKDQGHSKQNGSKASTKSSSSSRKSPSHKRTNENKAEKKQ 480
>SGD|S000003824 [details] [associations]
symbol:RPA12 "RNA polymerase I subunit A12.2" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IDA] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 SGD:S000003824
EMBL:BK006943 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:L47993
GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790 EMBL:L35564
eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
KO:K03000 InterPro:IPR019761 PROSITE:PS01030 OrthoDB:EOG45QMPS
EMBL:L00708 EMBL:Z49563 EMBL:AY558313 PIR:A48107 RefSeq:NP_012597.1
ProteinModelPortal:P32529 SMR:P32529 DIP:DIP-236N IntAct:P32529
MINT:MINT-472816 STRING:P32529 PaxDb:P32529 PeptideAtlas:P32529
PRIDE:P32529 EnsemblFungi:YJR063W GeneID:853526 KEGG:sce:YJR063W
CYGD:YJR063w OMA:YHTLQLR NextBio:974215 Genevestigator:P32529
GermOnline:YJR063W Uniprot:P32529
Length = 125
Score = 98 (39.6 bits), Expect = 0.00020, P = 0.00020
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
KC +CG + Y+ +Q RSADE T + TC +C +++
Sbjct: 85 KCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFR 122
>UNIPROTKB|B6ICU4 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase subunit"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 GO:GO:0005634 GO:GO:0008270 GO:GO:0006351
GO:GO:0003676 GO:GO:0003899 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG OrthoDB:EOG45X7XM
InterPro:IPR019761 PROSITE:PS01030 EMBL:CT737425 EMBL:CU607067
EMBL:AB158486 EMBL:AB158487 EMBL:AP009553 RefSeq:NP_001162172.1
RefSeq:XP_001929376.1 UniGene:Ssc.45148 STRING:B6ICU4
Ensembl:ENSSSCT00000001352 Ensembl:ENSSSCT00000001359
Ensembl:ENSSSCT00000034579 GeneID:100152094 GeneID:100155727
KEGG:ssc:100152094 KEGG:ssc:100155727 Uniprot:B6ICU4
Length = 123
Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 324 QRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
+ G E +C RCG Y+ Q RSADE T + TC NC
Sbjct: 70 EEGPEFQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>ZFIN|ZDB-GENE-050320-131 [details] [associations]
symbol:znrd1 "zinc ribbon domain containing 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 ZFIN:ZDB-GENE-050320-131
GO:GO:0005634 GO:GO:0008270 GO:GO:0006351 GO:GO:0003676
GO:GO:0003899 GeneTree:ENSGT00390000008126 InterPro:IPR019761
PROSITE:PS01030 EMBL:FP085397 EMBL:BX537309 IPI:IPI00994518
Ensembl:ENSDART00000139323 ArrayExpress:F1R4I1 Bgee:F1R4I1
Uniprot:F1R4I1
Length = 126
Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
KCSRC + Y+ Q RSADE T + TC++C
Sbjct: 86 KCSRCNKEGMVYHTRQMRSADEGQTVFFTCIHC 118
>UNIPROTKB|F1M109 [details] [associations]
symbol:F1M109 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 IPI:IPI00366810 Ensembl:ENSRNOT00000031410
Uniprot:F1M109
Length = 330
Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 243 VAVSVESVMFEKLGRSTGAE-KLKYRSIMFNIRDEKNP--DLRKRVLLGEVTPERLVTMS 299
+A +E+ +F L + T K KYR+++FN+RD +NP DL +V +VTP+ LV MS
Sbjct: 21 IAEGIEAALFH-LTQDTNLRYKSKYRNLLFNLRDPRNPPQDLFLKVAHCDVTPKDLVQMS 79
Query: 300 PEEMASDERQRQIENIKEKAL 320
++A E R + K ++L
Sbjct: 80 SIQLAPKELSRWRDQEKRRSL 100
>UNIPROTKB|F1PIF7 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase subunit"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 GO:GO:0005634 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
GeneTree:ENSGT00390000008126 OMA:SRCGHEG InterPro:IPR019761
PROSITE:PS01030 EMBL:AAEX03017624 ProteinModelPortal:F1PIF7
Ensembl:ENSCAFT00000019352 Uniprot:F1PIF7
Length = 126
Score = 96 (38.9 bits), Expect = 0.00033, P = 0.00033
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
+CSRCG Y+ Q RSADE T + TC +C
Sbjct: 86 RCSRCGHEGMAYHTRQMRSADEGQTVFYTCTSC 118
>UNIPROTKB|G3N3C0 [details] [associations]
symbol:G3N3C0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
EMBL:DAAA02075450 Ensembl:ENSBTAT00000044068 OMA:HEDASTS
NextBio:20873392 Uniprot:G3N3C0
Length = 377
Score = 117 (46.2 bits), Expect = 0.00038, P = 0.00038
Identities = 38/143 (26%), Positives = 64/143 (44%)
Query: 243 VAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEE 302
+A +E+ +F ++ K RS + N++ N L++ +L G ++P M+ E
Sbjct: 227 LAQEIEAHVFALHPKNLQKYKTCIRSKVANLKKPHNSHLQQNLLSGTMSPREFAEMTAME 286
Query: 303 MASDERQRQIENIKEKALFECQRGGEATAT-TDQFKCSRCGQRKCT---------YYQMQ 352
MAS E ++ + + AL + T T + KC RC + C +
Sbjct: 287 MASQELKQLRASYMKSALRKHYLPQVVEGTPTRKIKCERCEKFNCQVTVIPRGTLFLPSW 346
Query: 353 TRSA--DEPMTTYVTCVNCSKRW 373
R+A DE M TYV C C ++W
Sbjct: 347 VRNAGPDEEMMTYVICNECGEQW 369
>UNIPROTKB|Q5JRI8 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003746 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL590548 EMBL:AL355803 UniGene:Hs.505004
UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00384330 SMR:Q5JRI8
STRING:Q5JRI8 Ensembl:ENST00000415602 UCSC:uc010gku.2
Uniprot:Q5JRI8
Length = 82
Score = 95 (38.5 bits), Expect = 0.00043, P = 0.00043
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D L+ LK+ P+T +L ST+VG + L K E++ +A +L+ WKK++ +
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 60
Query: 94 KKNG 97
++ G
Sbjct: 61 RERG 64
>UNIPROTKB|E5RIS7 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
EMBL:AC100821 HGNC:HGNC:11612 IPI:IPI00975678
ProteinModelPortal:E5RIS7 SMR:E5RIS7 PRIDE:E5RIS7
Ensembl:ENST00000520534 ArrayExpress:E5RIS7 Bgee:E5RIS7
Uniprot:E5RIS7
Length = 111
Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D LK LK+ P+T ++L ST++G + + K E++ +A +L+ WKK++ +T
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPST-- 82
Query: 94 KKNGSTGDKSSVTTGVVKPDS 114
+K+ K T P++
Sbjct: 83 EKDLDEKKKEPAITSQNSPEA 103
>POMBASE|SPCC1259.03 [details] [associations]
symbol:rpa12 "DNA-directed RNA polymerase complex I
subunit Rpa12" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IGI] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
PomBase:SPCC1259.03 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 GO:GO:0006353
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 InterPro:IPR019761
PROSITE:PS01030 EMBL:AF219943 EMBL:AB023403 EMBL:AB023817
PIR:T40892 RefSeq:NP_588059.1 ProteinModelPortal:O94703
STRING:O94703 PRIDE:O94703 EnsemblFungi:SPCC1259.03.1
GeneID:2538906 KEGG:spo:SPCC1259.03 OMA:CGNLLES OrthoDB:EOG45QMPS
NextBio:20800084 Uniprot:O94703
Length = 119
Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 328 EATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375
E AT ++ KC +CG T++ +Q RSADE T + C C+ +KF
Sbjct: 71 EEAATIEE-KCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCA--YKF 115
>TAIR|locus:2156814 [details] [associations]
symbol:AT5G05140 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0009611 "response to wounding" evidence=RCA]
[GO:0009620 "response to fungus" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=RCA] [GO:0010200
"response to chitin" evidence=RCA] InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 GO:GO:0005634 EMBL:CP002688 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003746 EMBL:AB018111
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:AY062787 EMBL:AY081599
IPI:IPI00527750 RefSeq:NP_196133.3 UniGene:At.21997
ProteinModelPortal:Q9FHK9 SMR:Q9FHK9 PRIDE:Q9FHK9
EnsemblPlants:AT5G05140.1 GeneID:830396 KEGG:ath:AT5G05140
TAIR:At5g05140 eggNOG:NOG250858 HOGENOM:HOG000241439
InParanoid:Q9FHK9 OMA:FDEMDED PhylomeDB:Q9FHK9
ProtClustDB:CLSN2918616 Genevestigator:Q9FHK9 Uniprot:Q9FHK9
Length = 436
Score = 116 (45.9 bits), Expect = 0.00062, P = 0.00061
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIVIEETTRNK 94
+D+L+ LK + D+L ST++GK + L KH +KI+ +A L+ WK++V + K
Sbjct: 160 LDSLRHLKLMSLNVDILKSTEIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTK 219
Query: 95 K-NGSTGDKSSVTTGVV 110
+ G+ G S V+
Sbjct: 220 EITGAEGTPESANPSVL 236
>RGD|1560989 [details] [associations]
symbol:Spocd1 "SPOC domain containing 1" species:10116 "Rattus
norvegicus" [GO:0010923 "negative regulation of phosphatase
activity" evidence=ISO] REFSEQ:XM_003750045 Ncbi:XP_003750093
Length = 768
Score = 119 (46.9 bits), Expect = 0.00063, P = 0.00063
Identities = 34/111 (30%), Positives = 61/111 (54%)
Query: 212 IRELLANALSKVTSEADEEIID-EVNACDPIRVAVSVESVMFEKLGRSTGAE-KLKYRSI 269
+R + A+ +V +E+ + E+ + +A +E+ +F L + T K KYR++
Sbjct: 161 VRSTVVRAMQEVLWTRTQELPNLELREDEVEGIAEGIEAALFH-LTQDTNLRYKSKYRNL 219
Query: 270 MFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKAL 320
+FN+RD +N DL +V +VTP+ LV MS ++A E R + K ++L
Sbjct: 220 LFNLRDPRN-DLFLKVAHCDVTPKDLVQMSSIQLAPKELSRWRDQEKRRSL 269
>UNIPROTKB|E5RJ93 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
EMBL:AC100821 HGNC:HGNC:11612 IPI:IPI00974396
ProteinModelPortal:E5RJ93 SMR:E5RJ93 Ensembl:ENST00000518784
ArrayExpress:E5RJ93 Bgee:E5RJ93 Uniprot:E5RJ93
Length = 90
Score = 93 (37.8 bits), Expect = 0.00070, P = 0.00070
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIV 86
+D LK LK+ P+T ++L ST++G + + K E++ +A +L+ WKK++
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.128 0.352 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 376 354 0.00079 117 3 11 23 0.46 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 126
No. of states in DFA: 608 (65 KB)
Total size of DFA: 209 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.45u 0.13s 34.58t Elapsed: 00:00:01
Total cpu time: 34.46u 0.13s 34.59t Elapsed: 00:00:01
Start: Fri May 10 17:15:26 2013 End: Fri May 10 17:15:27 2013
WARNINGS ISSUED: 1