BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017145
(376 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 164/347 (47%), Gaps = 75/347 (21%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D LK LK+ P+T ++L ST++G + + K E++ +A +L+ WKK++
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL------- 77
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQV 153
+G + +K +D+ +K A+ + A + E T S + V
Sbjct: 78 --DGPSTEKD-------------LDEKKKEPAITSQNSPEA---REESTSSGN----VSN 115
Query: 154 EKKETNGDSVMDRGEAVKVEKIIEEEKQAPSVRKPSQGTIATPKLTQLIKCNDSSRDKIR 213
K ETN + + +APS +DS R K R
Sbjct: 116 RKDETNAR-----------DTYVSSFPRAPST-------------------SDSVRLKCR 145
Query: 214 ELLANAL----SKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSI 269
E+LA AL + ADEE + +E +++++ + K + RS
Sbjct: 146 EMLAAALRTGDDYIAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVRSR 194
Query: 270 MFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEA 329
+ N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+ E Q
Sbjct: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 254
Query: 330 TATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 255 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 116/199 (58%), Gaps = 13/199 (6%)
Query: 183 PSVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNA 237
PS ++P +TP++T + C D+ R+K RE+L AL + D + +
Sbjct: 109 PSRKRPELPRAPSTPRITTFPPVPVTC-DAVRNKCREMLTAAL-----QTDHDHVAIGAD 162
Query: 238 CDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVT 297
C+ R++ +E +F +G + K + RS + N++D KNPDLR+ VL G +TP+++
Sbjct: 163 CE--RLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAV 220
Query: 298 MSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSAD 357
M+ EEMASDE + + + ++A+ E Q TD F C +C ++ CTY Q+QTRS+D
Sbjct: 221 MTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSD 280
Query: 358 EPMTTYVTCVNCSKRWKFC 376
EPMTT+V C C RWKFC
Sbjct: 281 EPMTTFVVCNECGNRWKFC 299
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIVIEETTRN 93
+D L+ LK+ P+T +L ST+VG + L K E++ +A +L+ WKK++ +
Sbjct: 28 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 87
Query: 94 KKNG 97
++ G
Sbjct: 88 RERG 91
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 173/348 (49%), Gaps = 33/348 (9%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREK-IQIVASNLLDIWKKIV-IEETTR 92
+D LK+L S ++ +L +T++G + + KH +K + +A L+ WK+++ TT+
Sbjct: 27 LDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRTTK 86
Query: 93 NKKNGSTGDKSSVTTGV--VKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSET 150
++ K G KP++G +K K + SRS T
Sbjct: 87 GEREEREKAKKEKGLGCSDWKPEAGLSPPRKKGGG----------EPKTRRDSVDSRSST 136
Query: 151 VQVEKKETNGDSVMDRGEAVK--VEKIIEEEKQAPSVRKPSQGTIATPKLTQLIKCNDSS 208
K+ + ++R + K VE + P+ +A LT DS
Sbjct: 137 TSSPKRPS-----LERSNSSKSKVETPTTPSSPSTPTFAPAVCLLAPCYLT-----GDSV 186
Query: 209 RDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRS 268
RDK E+L+ AL +A++ D CD ++A +E ++++L + + + RS
Sbjct: 187 RDKCVEMLSAAL-----KAEDNFKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRS 239
Query: 269 IMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGE 328
+ N++D +NP LR+ VL G ++PE + M+ EEMASDE + + ++A+ E Q
Sbjct: 240 RISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 299
Query: 329 ATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TTD +CS+C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 300 GGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 347
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 116/203 (57%), Gaps = 13/203 (6%)
Query: 179 EKQAPSVRKPSQGTI-ATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIID 233
E Q PS ++P + +TP++T + C D+ R K RE+L AL ++ D I
Sbjct: 106 EAQDPSRKRPELPRMPSTPRITTFPPVPVTC-DAVRTKCREMLTAALQ---TDHDHVAIG 161
Query: 234 EVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPE 293
C +A +E +F +G + K + RS + N++D KNP LR++VL G +TP+
Sbjct: 162 ADCEC----LAGQIEECIFRDVGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQ 217
Query: 294 RLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQT 353
++ M+ EEMASDE + + + ++A+ E Q TD F C +C ++ CTY Q+QT
Sbjct: 218 QIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQT 277
Query: 354 RSADEPMTTYVTCVNCSKRWKFC 376
RS+DEPMTT+V C C RWKFC
Sbjct: 278 RSSDEPMTTFVVCNECGNRWKFC 300
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIV 86
+D L+ LK+ PVT +L ST+VG + L K E++ +A +L+ WKK++
Sbjct: 28 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLL 80
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 116/198 (58%), Gaps = 13/198 (6%)
Query: 184 SVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNAC 238
S +KP T +TP++T I C D+ R+K RE+L AL + D + + +C
Sbjct: 110 SCKKPDPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVAVGVSC 163
Query: 239 DPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTM 298
+ ++ +E +F +G + K + RS + N++D KNP LR+ VL G +TP+++ M
Sbjct: 164 E--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVM 221
Query: 299 SPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADE 358
+ EEMASDE + + + ++A+ E Q TD F C++C ++ CTY Q+QTRS+DE
Sbjct: 222 TSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDE 281
Query: 359 PMTTYVTCVNCSKRWKFC 376
PMTTYV C C RWKFC
Sbjct: 282 PMTTYVVCNECGNRWKFC 299
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKIV 86
+D L+ LK+ P+T +L ST+VG + L K E++ +A +L+ WKK++
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL 79
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 115/198 (58%), Gaps = 13/198 (6%)
Query: 184 SVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNAC 238
S +KP T +TP++T I C D+ R+K RE+L AL + D + + C
Sbjct: 110 SCKKPDPPRTPSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVAVGVNC 163
Query: 239 DPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTM 298
+ ++ +E +F +G + K + RS + N++D KNP LR+ VL G +TP+++ M
Sbjct: 164 E--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVM 221
Query: 299 SPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADE 358
+ EEMASDE + + + ++A+ E Q TD F C++C ++ CTY Q+QTRS+DE
Sbjct: 222 TSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDE 281
Query: 359 PMTTYVTCVNCSKRWKFC 376
PMTTYV C C RWKFC
Sbjct: 282 PMTTYVVCNECGNRWKFC 299
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR-EKIQIVASNLLDIWKKI--VIEETT 91
+D L+ LK+ P+T +L ST+VG + L K E++ +A +L+ WKK+ V + +
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDVSDGKS 86
Query: 92 RNKKNGSTGDKSS 104
RN+ G+ SS
Sbjct: 87 RNQGRGTPLPTSS 99
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 170/354 (48%), Gaps = 43/354 (12%)
Query: 35 VDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREK-IQIVASNLLDIWKKIVIEETTRN 93
+D LK+L S+ ++ +L +T++G + + KH K + +A L+ WK+++ T
Sbjct: 27 LDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNWKQLLDSPATPK 86
Query: 94 KKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQV 153
+ G ++ A K EK K E + S R + +V
Sbjct: 87 GEKGE----------------------ERVKAKKKEKGLDCSDWKPETSLSPPRKK--RV 122
Query: 154 EKKETNGDSVMDRGEAVKVEKIIEEEKQAPSVRKP--------SQGTIATPKLTQLIKC- 204
E+ + DSV + A K E+ S K P + L C
Sbjct: 123 EEPKDRRDSVDSKSSATSSPKRPSMERSNSSKSKAETPRTPSSPSSPTFAPSVCLLAPCY 182
Query: 205 --NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAE 262
DS RDK E+L+ AL +AD++ D CD ++A +E ++++L +
Sbjct: 183 LTGDSVRDKCVEMLSAAL-----KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKY 235
Query: 263 KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFE 322
+ + RS + N++D +NP LR+ VL G ++ + M+ EEMASDE + + ++A+ E
Sbjct: 236 RNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIRE 295
Query: 323 CQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
Q TTD F+CS+C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 296 HQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 349
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 99/175 (56%), Gaps = 15/175 (8%)
Query: 206 DSSRDKIRELLANAL----SKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGA 261
DS R K RE+LA AL V ADEE + +E +++++ +
Sbjct: 138 DSVRLKCREMLAAALRTGDDYVAIGADEE-----------ELGSQIEEAIYQEIRNTDMK 186
Query: 262 EKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALF 321
K + RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+
Sbjct: 187 YKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 246
Query: 322 ECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
E Q TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 247 EHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 99/175 (56%), Gaps = 15/175 (8%)
Query: 206 DSSRDKIRELLANAL----SKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGA 261
DS R K RE+LA AL V ADEE + +E +++++ +
Sbjct: 138 DSVRLKCREMLAAALRTGDDYVAIGADEE-----------ELGSQIEEAIYQEIRNTDMK 186
Query: 262 EKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALF 321
K + RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+
Sbjct: 187 YKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 246
Query: 322 ECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
E Q TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 247 EHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 99/175 (56%), Gaps = 15/175 (8%)
Query: 206 DSSRDKIRELLANAL----SKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGA 261
DS R K RE+LA AL + ADEE + +E +++++ +
Sbjct: 138 DSVRLKCREMLAAALRTGDDYIAIGADEE-----------ELGSQIEEAIYQEIRNTDMK 186
Query: 262 EKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALF 321
K + RS + N++D KNP+LRK VL G + P+ M+ EEMASDE + +N+ ++A+
Sbjct: 187 YKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 246
Query: 322 ECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
E Q TD F C +C ++ CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 247 EHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 12/170 (7%)
Query: 210 DKIRE----LLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLK 265
DKIR L+ NAL + E+ II + D V+ G++ + +
Sbjct: 131 DKIRNNCIGLMYNALVIDSDESSSLIIAKAKEIDA--------QVLARAAGKTGSEYRNR 182
Query: 266 YRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQR 325
RS+ N++D+ NP LR VL E+TP+RL TM+ E+AS++R+++ ++++ LF Q
Sbjct: 183 MRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASEDRRKEDAKLEQENLFHAQG 242
Query: 326 GGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375
A TD F C +C Q+K +YYQMQTRSADEPMTT+ C C RWKF
Sbjct: 243 AKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRWKF 292
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 99/173 (57%), Gaps = 12/173 (6%)
Query: 206 DSSRDKIRELLANALSKVTSEADEEIIDEV-NAC-DPIRVAVSVESVMFEKLGRSTGAEK 263
D+ R K RE+LA AL I EV C +P +A +E ++ + + K
Sbjct: 151 DAVRIKCREMLATALK----------IGEVPEGCGEPEEMAAELEDAIYSEFNNTDMKYK 200
Query: 264 LKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFEC 323
+ RS + N++D KNP LR + G VT ++L M+PEEMASDE ++ E ++A+ +
Sbjct: 201 NRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDA 260
Query: 324 QRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
Q TD KC++C +R CTY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 261 QLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKFC 313
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 12/210 (5%)
Query: 172 VEKIIEEEKQAPSVRKPSQGTIAT--PKLTQLIKC---NDSSRDKIRELLANALSKVTSE 226
VE+ + +A S + PS T + L C DS RDK E+L+ AL +
Sbjct: 146 VERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAAL-----K 200
Query: 227 ADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVL 286
AD++ D CD ++A +E ++++L + + + RS + N++D +NP LR+ VL
Sbjct: 201 ADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVL 258
Query: 287 LGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKC 346
G ++ + M+ EEMASDE + + ++A+ E Q TTD F+CS+C ++ C
Sbjct: 259 SGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNC 318
Query: 347 TYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376
TY Q+QTRSADEPMTT+V C C RWKFC
Sbjct: 319 TYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 85/138 (61%)
Query: 239 DPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTM 298
DP +AV +E ++ + + RS +FN+RD+KN LR+ VL G V E+ TM
Sbjct: 171 DPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATM 230
Query: 299 SPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADE 358
+ EEMAS E + + ++A+ E Q + +D FKC +CG++ CTY Q+QTRS+DE
Sbjct: 231 TSEEMASAEIREMRDKFTKEAILEHQMSVQQGTPSDMFKCGKCGKKNCTYTQLQTRSSDE 290
Query: 359 PMTTYVTCVNCSKRWKFC 376
PMTT+V C+ C RWKFC
Sbjct: 291 PMTTFVFCLECGNRWKFC 308
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 11/169 (6%)
Query: 209 RDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVM--FEKLGRSTGAEKLKY 266
RD++ + L + L+K + + I+ A ++ES M + A K +Y
Sbjct: 149 RDQVLKALYDVLAKESEHPPQSIL---------HTAKAIESEMNKVNNCDTNEAAYKARY 199
Query: 267 RSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRG 326
R I N+ + NPDL+ ++ G++TPE L T +++A +++IE I ++ L+ Q
Sbjct: 200 RIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGA 259
Query: 327 GEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375
+ TD+F C +C ++K +YYQ+QTRSADEP+TT+ TC C RWKF
Sbjct: 260 TIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKF 308
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 20/208 (9%)
Query: 175 IIEEEKQAPSVRKPSQGTIATPKLTQLIK----CNDSSRDKIRELLANALSKVTSEADEE 230
+++E K+ + P+ ++P + LI N R+K +L AL T++ DE
Sbjct: 126 LLQENKK---ISPPTTPKTSSPPIASLIAPITGANADLRNKTIQLFVEAL---TTDNDET 179
Query: 231 IIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEV 290
+ P +AV +E+ M++ + K K RS FN++ KN LR +L ++
Sbjct: 180 M------SPPEDIAVEIEAEMYDIYRGVSKEYKEKLRSFKFNLK--KNDILRLSLLNRQI 231
Query: 291 TPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQ 350
+ + +M MASD+ + + + + + G ATTDQF+C +C QRKCTY Q
Sbjct: 232 SVAKFCSMDIYSMASDDLKEERKKLDKFNTEASMLGQNNEATTDQFQCGKCKQRKCTYTQ 291
Query: 351 MQTRSADEPMTTYVTCV--NCSKRWKFC 376
+QTRSADEP TT+V C C RW+FC
Sbjct: 292 LQTRSADEPPTTFVKCCVKGCGNRWRFC 319
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 30 EVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIV 86
E + ++ LK K+F +T D+L ST +GK + L H I + L+D WK+ +
Sbjct: 19 EFDKALECLKNAKNFKITKDLLKSTDIGKSVGKLRAHKDIGISSQSKELIDKWKQDI 75
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 85/181 (46%), Gaps = 33/181 (18%)
Query: 127 KVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAVKVEKIIEEEKQAPSVR 186
K+ K ST T EK E +++KK KVEK + A S
Sbjct: 875 KIPKESTTVTCTGEKASKPGTHEKQEMKKK--------------KVEKGVLNVHPAASAS 920
Query: 187 KPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVS 246
KPS I R +R L + L K ++++ ++ +E A +VA
Sbjct: 921 KPSADQI---------------RQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATK 961
Query: 247 VESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASD 306
+E +F + K KYRS+MFN++D KN L K+VL GEVTP+ L+ MSPEE+AS
Sbjct: 962 IEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASK 1021
Query: 307 E 307
E
Sbjct: 1022 E 1022
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
N R IR L L K +++D+ I+ E ++A+ +E MF + K
Sbjct: 664 NSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVG---KIALHIEKEMFNLFQVTDNRYKS 720
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE 307
KYRSIMFN++D KN L RVL E++ +LV M PEE+ S E
Sbjct: 721 KYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKE 763
>sp|Q5UQS8|TFS2_MIMIV Transcription factor S-II-related protein OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R339 PE=3 SV=1
Length = 173
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 8/111 (7%)
Query: 267 RSIMFNIRDEKNP---DLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFEC 323
++IMFN++DE N ++K + + L ++PEE+ D I+ I K + E
Sbjct: 65 KNIMFNLKDENNHTIKKIKKLIDKNKYNAYNLAFLNPEELNKD---NWIKIIARKQMTE- 120
Query: 324 QRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
AT + C C +YQ+QTRSADEPMTT+ C NC K +K
Sbjct: 121 -ETLNQMATVEWKPCYACKNTSYHFYQLQTRSADEPMTTFYICKNCMKTYK 170
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=BYE1 PE=3 SV=1
Length = 822
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 243 VAVSVESVMFEKLG---RSTGAE-KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTM 298
+A+++E +++ G G+ + K+R++ FN+RD KN LR RV+ G+VTP+ LV M
Sbjct: 237 LALTIEQELYDAYGTVEPEIGSNYRDKFRTLSFNLRDSKNETLRIRVMTGQVTPQTLVAM 296
Query: 299 SPEEMASDERQRQIENIKEKAL 320
S EEM + E Q+ E ++ +A+
Sbjct: 297 SSEEMMNPELQKLAEEVRAEAI 318
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKL 264
N R IR L L K +++D+ I+ E ++A+ +E MF + K
Sbjct: 667 NSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVG---KIALHIEKEMFNLFQVTDNRYKS 723
Query: 265 KYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE 307
KYRSIMFN++D KN L RVL E++ +LV + PEE+ S E
Sbjct: 724 KYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKE 766
>sp|P0C8F6|TFS2_ASFM2 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-147
PE=2 SV=1
Length = 243
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 274 RDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATT 333
+++ D +++ GE+ PE+LV M+ E+ ++ I ++ + A T+
Sbjct: 147 HQQQDNDALNKLISGELKPEQLVGMTFAELCPSAALKEKTEITLRS-----QQKVAEKTS 201
Query: 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373
+KC C QR CTY ++QTR+ DEP T + TC C +
Sbjct: 202 QLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>sp|Q6ZMY3|SPOC1_HUMAN SPOC domain-containing protein 1 OS=Homo sapiens GN=SPOCD1 PE=2
SV=1
Length = 1216
Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 243 VAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEE 302
+A +E+ +++ + G K KYRS++FN+RD +N DL +V+ G+VTP LV MS +
Sbjct: 640 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 699
Query: 303 MASDERQRQIENIKEKAL 320
+A E R + +++ L
Sbjct: 700 LAPQELARWRDQEEKRGL 717
>sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1
SV=1
Length = 110
Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 341 CGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
CG ++Q+Q RSADEPMTT+ CVNC RWK
Sbjct: 75 CGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWK 108
>sp|Q9GMV6|TEANC_MACFA Transcription elongation factor A N-terminal and central
domain-containing protein OS=Macaca fascicularis
GN=TCEANC PE=2 SV=1
Length = 350
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 197 KLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLG 256
+L++L+ R K ELL AL+ +S AD+ D A +E +F
Sbjct: 161 RLSELLDPITPMRTKCIELLYAALT--SSSADQPKADLWQ-----NFAREIEEHVFTLYS 213
Query: 257 RSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE----RQRQI 312
++ K RS + N+++ KN L++ +L G ++P M+ EMA+ E R
Sbjct: 214 KNIKKYKTCIRSKVANLKNPKNSHLQQNLLSGTMSPREFAEMTVMEMANKELKQLRASYT 273
Query: 313 EN-IKEKALFECQRGGEATATTDQFKCSRCGQRKC--------TYY---QMQTRSADEPM 360
E+ I+E L + G + T++ KC RC + C T + ++ + DE M
Sbjct: 274 ESCIQEHYLPQVIDGTQ----TNKIKCRRCEKYNCKVTVIDRGTLFLPSWVRNSNPDEQM 329
Query: 361 TTYVTCVNCSKRW 373
TYV C C ++W
Sbjct: 330 MTYVICNECGEQW 342
>sp|Q9Y7V2|BYE1_SCHPO Transcription factor bye1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bye1 PE=3 SV=3
Length = 721
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 206 DSSRDKIRELLANA----LSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGA 261
D ++ +R+ +A A K+ +A E + + + +A+ +E +MF L +T
Sbjct: 211 DEIQNPVRKSVAKAWVSVFEKIIEKAKLEGVQGLEDLNSTSLALQLEHIMFMVLSYTTDH 270
Query: 262 E-------KLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIEN 314
+ K+R++ FN+ D+KNP R RVL E++ LV +S EEMA+ + + E
Sbjct: 271 SLTPNNKYREKFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPDLKNLAEE 330
Query: 315 IKEKA 319
I++++
Sbjct: 331 IRQQS 335
>sp|P0C8F5|TFS2_ASFK5 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-151 PE=2
SV=1
Length = 243
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 274 RDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATT 333
+++ D +++ GE+ PE + +M+ E+ ++ I ++ + A T+
Sbjct: 147 HQQQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTEITLRS-----QQKVAEKTS 201
Query: 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373
+KC C QR CTY ++QTR+ DEP T Y TC C +
Sbjct: 202 QLYKCPNCKQRMCTYREVQTRALDEPSTIYCTCKKCGHEF 241
>sp|P0C8F8|TFS2_ASFWA Transcription factor S-II-related protein OS=African swine fever
virus (isolate Warthog/Namibia/Wart80/1980) GN=War-150
PE=2 SV=1
Length = 243
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 274 RDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATT 333
+++ D +++ GE+ PE + +M+ E+ ++ I ++ + A T+
Sbjct: 147 HQQQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTEITLRS-----QQKVAEKTS 201
Query: 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373
+KC C QR CTY ++QTR+ DEP T + TC C +
Sbjct: 202 QLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>sp|P0C8F7|TFS2_ASFP4 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-152 PE=2 SV=1
Length = 243
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 274 RDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATT 333
+++ D +++ GE+ PE + +M+ E+ ++ I ++ + A T+
Sbjct: 147 HQQQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTEITLRS-----QQKVAEKTS 201
Query: 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373
+KC C QR CTY ++QTR+ DEP T + TC C +
Sbjct: 202 QLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>sp|P27948|TFS2_ASFB7 Transcription factor S-II-related protein OS=African swine fever
virus (strain Badajoz 1971 Vero-adapted) GN=BA71V-140
PE=2 SV=1
Length = 243
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 274 RDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATT 333
+++ D +++ GE+ PE + +M+ E+ ++ I ++ + A T+
Sbjct: 147 HQQQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTEITLRS-----QQKVAEKTS 201
Query: 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373
+KC C QR CTY ++QTR+ DEP T + TC C +
Sbjct: 202 QLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGHEF 241
>sp|Q6GZP4|081R_FRG3G Putative transcription elongation factor S-II-like protein 81R
OS=Frog virus 3 (isolate Goorha) GN=FV3-081R PE=4 SV=1
Length = 92
Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373
KC CG R+ Q QTRSADEPMT + C C KRW
Sbjct: 54 KCPGCGSRRVHALQRQTRSADEPMTLFAMCSECGKRW 90
>sp|Q3US16|TEANC_MOUSE Transcription elongation factor A N-terminal and central
domain-containing protein OS=Mus musculus GN=Tceanc PE=2
SV=1
Length = 359
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 52/284 (18%)
Query: 119 KVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAVKVEKIIEE 178
KV T+A K E + ++ V ++T S SE + G + +++ +
Sbjct: 91 KVLHTNANKEESAAVSQDVSQDETSGSSHSEIM---------------GLCSSLSRLLPQ 135
Query: 179 EKQAPSVRKPSQGTIATPKLTQ-LIKCNDSS----------------RDKIRELLANALS 221
+ P+ S+ + A ++ + +K +DS R K ELL AL+
Sbjct: 136 DAAKPAAAIGSESSTAQMEINEGYLKGDDSECTRKSSGVFQGTLVSVRSKCVELLYTALA 195
Query: 222 KVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDL 281
++ E I + +A +E +F + K RS + N+++ +N L
Sbjct: 196 SSCTDHTEVHIWQ-------NLAREIEEHIFTLHSNNIKKYKTSIRSKVANLKNPRNFHL 248
Query: 282 RKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFE-CQRGGEATATTDQFKCSR 340
++ L G ++ MS +MAS E ++ + E ++ E C T++ KC R
Sbjct: 249 QQNFLSGTMSAREFAEMSVLDMASQELKQLRASYTESSIQEHCLPQSVDGTWTNKIKCRR 308
Query: 341 CGQRKC--------TYY---QMQTRSADEPMTTYVTCVNCSKRW 373
C + C T + +Q + DE MT YV C C ++W
Sbjct: 309 CDKYNCKVTVIARGTLFLPSWVQNSNPDEQMT-YVICNECGEQW 351
>sp|Q8N8B7|TEANC_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein OS=Homo sapiens GN=TCEANC PE=2
SV=2
Length = 351
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 27/181 (14%)
Query: 209 RDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRS 268
R K ELL AL+ +S D+ D A +E +F ++ K RS
Sbjct: 174 RTKCIELLYAALT--SSSTDQPKADLWQ-----NFAREIEEHVFTLYSKNIKKYKTCIRS 226
Query: 269 IMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDE----RQRQIEN-IKEKALFEC 323
+ N+++ +N L++ +L G +P M+ EMA+ E R E+ I+E L +
Sbjct: 227 KVANLKNPRNSHLQQNLLSGTTSPREFAEMTVMEMANKELKQLRASYTESCIQEHYLPQV 286
Query: 324 QRGGEATATTDQFKCSRCGQRKC--------TYY---QMQTRSADEPMTTYVTCVNCSKR 372
G + T++ KC RC + C T + ++ + DE M TYV C C ++
Sbjct: 287 IDGTQ----TNKIKCRRCEKYNCKVTVIDRGTLFLPSWVRNSNPDEQMMTYVICNECGEQ 342
Query: 373 W 373
W
Sbjct: 343 W 343
>sp|Q9CQZ7|RPC10_MOUSE DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus
GN=Polr3k PE=2 SV=1
Length = 108
Score = 48.5 bits (114), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 338 CSRCGQRKCTYYQMQTRSADEPMTTYVTCVN--CSKRWK 374
C +C + + Q+QTRSADEPMTT+ C N C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>sp|Q9Y2Y1|RPC10_HUMAN DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens
GN=POLR3K PE=1 SV=2
Length = 108
Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 338 CSRCGQRKCTYYQMQTRSADEPMTTYVTCVN--CSKRWK 374
C +C + + Q+QTRSADEPMTT+ C N C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>sp|Q2M2S7|RPC10_BOVIN DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus
GN=POLR3K PE=3 SV=1
Length = 108
Score = 46.2 bits (108), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 338 CSRCGQRKCTYYQMQTRSADEPMTTYVTCVN--CSKRWK 374
C +C + + Q+QTR ADEPMTT+ C N C RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWR 107
>sp|Q58548|RPOM_METJA DNA-directed RNA polymerase subunit M OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoM PE=3 SV=1
Length = 108
Score = 45.8 bits (107), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 307 ERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTC 366
E + +EN KEK G E TT + +C +CG + ++ QTR ADEP T + C
Sbjct: 39 EYKEHLENKKEKITVIESEGLETLPTT-RIECPKCGHNEAYWWLQQTRCADEPETRFYKC 97
Query: 367 VNCSKRWK 374
C W+
Sbjct: 98 KKCGHTWR 105
>sp|Q6MFY5|RPA12_RAT DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus
GN=Znrd1 PE=3 SV=1
Length = 123
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
+CSRCG YY Q RSADE T + TC+NC
Sbjct: 83 RCSRCGHEGMAYYTRQMRSADEGQTVFYTCINC 115
>sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b
OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
Length = 436
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 32 SRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIVIEETT 91
S +D+L+ LK + D+L ST++GK + L KH +KI+ +A L+ WK++V +
Sbjct: 157 SVLLDSLRHLKLMSLNVDILKSTEIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVN 216
Query: 92 RNKK-NGSTGDKSSVTTGVV 110
K+ G+ G S V+
Sbjct: 217 TTKEITGAEGTPESANPSVL 236
>sp|O13896|RPC10_SCHPO DNA-directed RNA polymerase III subunit RPC10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc11 PE=3 SV=1
Length = 109
Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 309 QRQIENI--KEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTC 366
Q++++++ E+A FE + E T ++C + ++Q+Q RSADEPM+T+ C
Sbjct: 46 QKEVDDVLGGEEA-FESNQQTEVTCEN-----TKCDNNRAYFFQLQIRSADEPMSTFYRC 99
Query: 367 VNCSKRWK 374
C +W+
Sbjct: 100 TKCKFQWR 107
>sp|Q197A5|VF349_IIV3 Putative transcription elongation factor S-II-like protein 055R
OS=Invertebrate iridescent virus 3 GN=IIV3-055R PE=3
SV=1
Length = 137
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 340 RCGQRKCT---YYQMQTRSADEPMTTYVTCVNCSKRW 373
RCG+ CT ++ QTRS DEP T + +C NC RW
Sbjct: 99 RCGKCDCTKILWFSKQTRSMDEPTTIFASCSNCKTRW 135
>sp|Q56254|RPOM_THECE DNA-directed RNA polymerase subunit M OS=Thermococcus celer GN=rpoM
PE=1 SV=1
Length = 110
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 330 TATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
T T + C +CG +++MQTR+ DEP T + C C W+
Sbjct: 63 TLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 107
>sp|Q1RMP0|RPA12_BOVIN DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus GN=ZNRD1
PE=2 SV=1
Length = 123
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
+CSRCG Y+ Q RSADE T + TC NC
Sbjct: 83 RCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>sp|Q791N7|RPA12_MOUSE DNA-directed RNA polymerase I subunit RPA12 OS=Mus musculus
GN=Znrd1 PE=2 SV=1
Length = 123
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
+C RCG Y+ Q RSADE T + TC+NC
Sbjct: 83 RCPRCGHEGMAYHTRQMRSADEGQTVFYTCINC 115
>sp|F4J4Y5|MD26A_ARATH Probable mediator of RNA polymerase II transcription subunit 26a
OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1
Length = 580
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 32 SRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIVIEE-T 90
S +++L++L+S ++ D+L T++GK + L +H +KI +A L WK++V +
Sbjct: 126 SVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMN 185
Query: 91 TRNKKNGSTGDKSSVTTGVV 110
T + G+ G S+ V+
Sbjct: 186 TPEEMAGTEGTPESLNLSVI 205
>sp|P32529|RPA12_YEAST DNA-directed RNA polymerase I subunit RPA12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA12 PE=1
SV=1
Length = 125
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
KC +CG + Y+ +Q RSADE T + TC +C +++
Sbjct: 85 KCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFR 122
>sp|P36958|RPB9_DROME DNA-directed RNA polymerase II subunit RPB9 OS=Drosophila
melanogaster GN=RpII15 PE=2 SV=2
Length = 129
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCV--NCSKRW 373
T+ C +C R+ ++Q QTR A+E M Y C NC+ RW
Sbjct: 85 TEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
>sp|Q07271|RPOM_SULAC DNA-directed RNA polymerase subunit M OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoM PE=3 SV=2
Length = 111
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 338 CSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374
C CG + ++ +QTRSADEP T + C C K W+
Sbjct: 72 CPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWR 108
>sp|Q1XHV8|RPA12_PANTR DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes
GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
+C RCG Y+ Q RSADE T + TC NC
Sbjct: 86 RCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>sp|Q9P1U0|RPA12_HUMAN DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens
GN=ZNRD1 PE=1 SV=1
Length = 126
Score = 39.7 bits (91), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 369
+C RCG Y+ Q RSADE T + TC NC
Sbjct: 86 RCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,870,203
Number of Sequences: 539616
Number of extensions: 5004457
Number of successful extensions: 16400
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 16120
Number of HSP's gapped (non-prelim): 431
length of query: 376
length of database: 191,569,459
effective HSP length: 119
effective length of query: 257
effective length of database: 127,355,155
effective search space: 32730274835
effective search space used: 32730274835
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)