Query 017145
Match_columns 376
No_of_seqs 286 out of 1111
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pqv_S STP-alpha, transcriptio 100.0 5.7E-66 1.9E-70 502.1 28.6 302 2-376 3-309 (309)
2 3po3_S Transcription elongatio 100.0 1.2E-52 4E-57 377.9 12.7 169 199-376 8-178 (178)
3 2lw4_A Transcription elongatio 100.0 3.5E-31 1.2E-35 221.1 2.9 108 201-315 5-112 (113)
4 3ndq_A Transcription elongatio 100.0 4E-29 1.4E-33 207.2 8.3 100 201-307 9-108 (108)
5 2dme_A PHD finger protein 3; P 99.9 6.4E-29 2.2E-33 209.6 1.4 109 204-316 8-116 (120)
6 1tfi_A Transcriptional elongat 99.9 3.5E-22 1.2E-26 142.8 5.2 48 329-376 3-50 (50)
7 1wjt_A Transcription elongatio 99.7 1.4E-18 4.7E-23 142.5 4.3 79 1-89 10-89 (103)
8 1qyp_A RNA polymerase II; tran 99.7 1.2E-17 4.1E-22 122.8 4.9 46 329-374 9-54 (57)
9 3h0g_I DNA-directed RNA polyme 99.7 4.3E-17 1.5E-21 136.1 4.7 49 326-374 63-111 (113)
10 1twf_I B12.6, DNA-directed RNA 99.6 1.1E-16 3.8E-21 135.3 4.8 48 327-374 64-111 (122)
11 3qt1_I DNA-directed RNA polyme 99.6 3.6E-17 1.2E-21 140.0 0.0 49 326-374 83-131 (133)
12 2xpp_A IWS1, ECU08_0440; trans 97.6 3.9E-05 1.3E-09 66.2 4.2 59 29-87 79-139 (145)
13 3nfq_A Transcription factor IW 97.4 4.3E-05 1.5E-09 67.4 2.0 58 30-87 95-154 (170)
14 2b4j_C PC4 and SFRS1 interacti 96.9 0.0012 4.3E-08 52.9 5.5 79 1-87 4-84 (98)
15 1z9e_A PC4 and SFRS1 interacti 96.8 0.0013 4.3E-08 55.1 4.8 79 1-87 4-84 (127)
16 1k81_A EIF-2-beta, probable tr 92.7 0.096 3.3E-06 34.1 3.2 31 337-374 2-32 (36)
17 2akl_A PHNA-like protein PA012 88.5 0.11 3.6E-06 43.6 0.6 30 334-374 26-55 (138)
18 2fiy_A Protein FDHE homolog; F 87.5 0.34 1.2E-05 46.5 3.5 40 334-375 181-220 (309)
19 1wii_A Hypothetical UPF0222 pr 81.0 1.7 6E-05 33.6 4.3 37 334-374 22-58 (85)
20 1vq8_Z 50S ribosomal protein L 80.6 1.4 4.8E-05 34.0 3.6 31 333-373 25-55 (83)
21 1pft_A TFIIB, PFTFIIBN; N-term 79.6 1.1 3.6E-05 30.9 2.4 31 334-373 4-34 (50)
22 1qxf_A GR2, 30S ribosomal prot 77.4 0.67 2.3E-05 34.2 0.8 29 335-372 7-35 (66)
23 2e2z_A TIM15; protein import, 74.2 0.84 2.9E-05 36.4 0.7 36 334-372 12-47 (100)
24 2g2k_A EIF-5, eukaryotic trans 72.9 2.7 9.3E-05 36.7 3.7 34 335-373 96-129 (170)
25 3j20_W 30S ribosomal protein S 72.6 1.1 3.7E-05 32.8 0.9 29 335-372 15-43 (63)
26 2e9h_A EIF-5, eukaryotic trans 70.3 2.6 8.8E-05 36.4 2.9 34 335-373 103-136 (157)
27 2xzm_6 RPS27E; ribosome, trans 70.2 1.1 3.9E-05 34.3 0.6 29 335-372 32-60 (81)
28 3iz6_X 40S ribosomal protein S 69.4 0.78 2.7E-05 35.6 -0.5 29 335-372 36-64 (86)
29 1x0t_A Ribonuclease P protein 67.3 22 0.00075 28.9 7.9 37 335-375 65-106 (120)
30 2fiy_A Protein FDHE homolog; F 65.8 3.7 0.00013 39.3 3.2 41 334-374 221-264 (309)
31 2k3r_A Ribonuclease P protein 65.0 23 0.00078 29.0 7.6 37 335-375 60-101 (123)
32 1ffk_W Ribosomal protein L37AE 64.4 11 0.00036 28.4 4.9 32 332-373 24-55 (73)
33 3u5c_b RP61, YS20, 40S ribosom 63.9 1.6 5.5E-05 33.5 0.3 29 335-372 34-62 (82)
34 1nee_A EIF-2-beta, probable tr 63.7 2.4 8.4E-05 35.8 1.4 31 335-372 102-132 (138)
35 2d74_B Translation initiation 60.7 1.7 5.9E-05 37.2 -0.1 33 335-374 104-136 (148)
36 2gmg_A Hypothetical protein PF 59.5 7.8 0.00027 31.1 3.6 72 287-374 22-95 (105)
37 1dl6_A Transcription factor II 58.6 5.1 0.00017 28.6 2.1 28 336-372 12-39 (58)
38 1twf_L ABC10-alpha, DNA-direct 58.4 5.2 0.00018 29.8 2.2 30 332-372 25-54 (70)
39 3j21_i 50S ribosomal protein L 57.8 9.6 0.00033 29.3 3.7 31 333-373 33-63 (83)
40 3iz5_m 60S ribosomal protein L 52.1 13 0.00044 29.2 3.6 31 333-373 34-64 (92)
41 3cc2_Z 50S ribosomal protein L 51.8 12 0.00042 30.5 3.6 31 333-373 58-88 (116)
42 3dwd_A ADP-ribosylation factor 50.7 8.3 0.00028 32.8 2.5 30 333-370 36-65 (147)
43 2jox_A Churchill protein; zinc 48.4 13 0.00043 29.6 3.0 37 336-372 27-66 (106)
44 1nwd_B GAD, glutamate decarbox 48.2 11 0.00039 22.2 2.0 15 75-89 11-25 (28)
45 3ga8_A HTH-type transcriptiona 48.1 8 0.00027 28.9 1.9 39 336-374 3-47 (78)
46 3izc_m 60S ribosomal protein R 47.7 16 0.00055 28.6 3.5 31 333-373 34-64 (92)
47 4esj_A Type-2 restriction enzy 44.8 8.5 0.00029 35.4 1.8 33 335-373 34-66 (257)
48 4a17_Y RPL37A, 60S ribosomal p 44.7 14 0.00049 29.5 2.8 31 333-373 34-64 (103)
49 1ltl_A DNA replication initiat 43.6 9.4 0.00032 35.5 2.0 39 329-374 128-168 (279)
50 1gnf_A Transcription factor GA 42.5 2.9 9.9E-05 28.6 -1.3 34 334-374 3-36 (46)
51 3j20_Y 30S ribosomal protein S 41.6 16 0.00055 25.2 2.4 33 331-373 15-47 (50)
52 2qkd_A Zinc finger protein ZPR 41.4 15 0.00051 36.4 3.0 40 334-374 219-260 (404)
53 1dxg_A Desulforedoxin; non-hem 41.3 11 0.00037 24.1 1.4 12 361-372 4-15 (36)
54 4ayb_P DNA-directed RNA polyme 40.8 7.5 0.00026 26.7 0.6 28 336-372 4-32 (48)
55 3cw2_K Translation initiation 39.8 2.7 9.1E-05 35.6 -2.3 32 334-372 102-133 (139)
56 2vut_I AREA, nitrogen regulato 37.5 3.6 0.00012 27.7 -1.4 31 337-374 3-33 (43)
57 2k4x_A 30S ribosomal protein S 33.9 32 0.0011 24.1 3.0 34 330-373 13-46 (55)
58 2owa_A Arfgap-like finger doma 33.7 23 0.00078 29.7 2.6 30 333-370 34-63 (138)
59 4gat_A Nitrogen regulatory pro 32.5 3.6 0.00012 30.3 -2.3 36 333-375 7-42 (66)
60 2gut_A ARC/mediator, positive 31.5 76 0.0026 23.9 4.9 55 206-274 12-66 (77)
61 3jyw_9 60S ribosomal protein L 30.9 14 0.00048 27.6 0.7 31 333-373 24-54 (72)
62 3dfx_A Trans-acting T-cell-spe 30.6 5.4 0.00019 29.1 -1.6 35 333-374 5-39 (63)
63 2pk7_A Uncharacterized protein 30.4 25 0.00087 25.9 2.1 30 334-373 7-36 (69)
64 3j21_g 50S ribosomal protein L 29.9 8.1 0.00028 27.0 -0.7 25 334-372 13-37 (51)
65 1x3z_A Peptide: N-glycanase; h 28.3 38 0.0013 32.6 3.5 42 334-375 118-167 (335)
66 1lko_A Rubrerythrin all-iron(I 28.3 37 0.0013 29.7 3.2 27 334-372 154-180 (191)
67 1kdx_A CBP; complex (transcrip 28.1 1.2E+02 0.004 23.0 5.5 65 205-273 11-75 (81)
68 2js4_A UPF0434 protein BB2007; 27.9 22 0.00076 26.2 1.4 31 334-374 7-37 (70)
69 4gl2_A Interferon-induced heli 27.4 31 0.0011 35.4 2.9 15 359-374 637-651 (699)
70 2ct7_A Ring finger protein 31; 26.7 24 0.00083 26.7 1.5 9 335-343 24-33 (86)
71 3pwf_A Rubrerythrin; non heme 25.3 1.1E+02 0.0037 26.2 5.6 26 334-372 137-162 (170)
72 2kvh_A Zinc finger and BTB dom 25.0 25 0.00087 18.9 1.0 10 364-373 4-13 (27)
73 1vd4_A Transcription initiatio 24.9 7.4 0.00025 26.9 -1.7 38 334-374 13-50 (62)
74 2jr6_A UPF0434 protein NMA0874 24.8 26 0.00088 25.8 1.2 31 334-374 7-37 (68)
75 1k3x_A Endonuclease VIII; hydr 24.6 1.9E+02 0.0064 26.4 7.4 29 334-370 233-261 (262)
76 2i5o_A DNA polymerase ETA; zin 24.5 22 0.00075 23.3 0.7 13 332-344 6-18 (39)
77 2olm_A Nucleoporin-like protei 24.0 50 0.0017 27.6 3.0 30 333-370 23-52 (140)
78 3mhs_E SAGA-associated factor 23.6 24 0.00081 27.8 0.8 16 356-372 69-84 (96)
79 2k5r_A Uncharacterized protein 23.5 30 0.001 27.3 1.4 40 334-374 7-64 (97)
80 2kvf_A Zinc finger and BTB dom 23.1 30 0.001 18.6 1.1 10 364-373 4-13 (28)
81 2lo3_A SAGA-associated factor 23.0 37 0.0013 22.6 1.6 16 357-372 11-26 (44)
82 2adr_A ADR1; transcription reg 22.6 5.9 0.0002 26.6 -2.6 10 364-373 31-40 (60)
83 2p57_A GTPase-activating prote 22.6 45 0.0016 28.1 2.5 30 333-370 35-64 (144)
84 2xzf_A Formamidopyrimidine-DNA 22.2 58 0.002 30.1 3.4 30 335-372 242-271 (271)
85 3eqt_A ATP-dependent RNA helic 21.9 26 0.00088 29.7 0.8 16 359-374 65-80 (145)
86 2hf1_A Tetraacyldisaccharide-1 21.6 30 0.001 25.4 1.0 30 334-373 7-36 (68)
87 2jsp_A Transcriptional regulat 21.6 26 0.00089 27.1 0.7 13 362-374 20-32 (87)
88 3nct_A Protein PSIB; DNA bindi 21.2 55 0.0019 27.3 2.6 73 289-367 4-79 (144)
89 2kae_A GATA-type transcription 21.1 9.6 0.00033 28.4 -1.8 33 334-374 7-41 (71)
90 3a43_A HYPD, hydrogenase nicke 21.0 49 0.0017 27.5 2.4 15 334-348 106-120 (139)
91 2ctt_A DNAJ homolog subfamily 20.5 94 0.0032 24.0 3.9 31 335-371 45-75 (104)
92 1rik_A E6APC1 peptide; E6-bind 20.4 35 0.0012 18.4 1.0 10 364-373 3-12 (29)
93 2kvg_A Zinc finger and BTB dom 20.3 29 0.00099 18.8 0.6 10 364-373 4-13 (27)
94 1bbo_A Human enhancer-binding 20.3 5.3 0.00018 26.5 -3.2 10 364-373 30-39 (57)
95 2m0d_A Zinc finger and BTB dom 20.1 37 0.0012 18.3 1.0 10 364-373 4-13 (30)
No 1
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=100.00 E-value=5.7e-66 Score=502.14 Aligned_cols=302 Identities=25% Similarity=0.427 Sum_probs=225.8
Q ss_pred hhHHHHHHHHHHHHHhHhhhcCCCCCCCCHHHHHHHHHHh-cCCCCCHHhhhcCccceecccccCCCCHHHHHHHHHHHH
Q 017145 2 EQELVELFDAAKKAADSAAIDGVSSGGPEVSRCVDALKRL-KSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLD 80 (376)
Q Consensus 2 e~e~~el~~~a~k~a~~~~~~~~~~~~~~~~~~l~~L~~L-~~~~it~~~L~~T~iG~~V~~Lrkh~~~~I~~~Ak~Lv~ 80 (376)
|+|++++++...+ .. .+.+.++++|++| +.++||.++|++|+||++||+||||++++|+.+|+.||+
T Consensus 3 ~~el~~~~~~L~k---~~---------~~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~ 70 (309)
T 1pqv_S 3 SKEVLVHVKNLEK---NK---------SNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMIS 70 (309)
T ss_pred HHHHHHHHHHHhc---cC---------CCHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4556665555544 11 2578999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCcccCccCCCCCCccccccccchhhcccccchhhhhhccCCCCCchhhhhhhcccCC
Q 017145 81 IWKKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNG 160 (376)
Q Consensus 81 ~WK~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (376)
+||++|..+..++.+.+.. +. ..+. ...+.++ +...+... +. + . .+ .
T Consensus 71 ~WK~~v~~~~~~~~~~~~~-~~--~~~~-~~~~~~~---~~~~~~~~----~~---------~---~-~~----~----- 117 (309)
T 1pqv_S 71 SWKDAINKNKRSRQAQQHH-QD--HAPG-NAEDKTT---VGESVNGV----QQ---------P---A-SS----Q----- 117 (309)
T ss_pred HHHHHHHHhccCCcccccc-cc--cccc-cccCCCC---CCCCcCCC----CC---------C---c-cc----c-----
Confidence 9999998775433211100 00 0000 0000000 00000000 00 0 0 00 0
Q ss_pred CcccCCCcchhhhHHHhhhhcCCCCCCCCCCCCCCCcccc--cccCCchhHHHHHHHHHHHHhhhhccChhhhhhhhccc
Q 017145 161 DSVMDRGEAVKVEKIIEEEKQAPSVRKPSQGTIATPKLTQ--LIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNAC 238 (376)
Q Consensus 161 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~ 238 (376)
.+ +..+...+++. ..++.... .+.++|.+|++||++|+++|.....+.+.
T Consensus 118 -----~~-------------~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~R~k~r~~L~~aL~~~~~~~~~--------- 169 (309)
T 1pqv_S 118 -----SD-------------AMKQDKYVSTK-PRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPPQ--------- 169 (309)
T ss_pred -----cc-------------cccCCCCCCCC-CCCCCCCCCCcCcCChHHHHHHHHHHHHHHhcCCCccch---------
Confidence 00 00000000000 01111122 33678999999999999999864322211
Q ss_pred ChHHHHHHHHHHHHHHhCCCchh--hhHHHHHHHhhccCCCChhhhhchhcCCCChhhhccCChhhcCcHHHHHHHHHHH
Q 017145 239 DPIRVAVSVESVMFEKLGRSTGA--EKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIK 316 (376)
Q Consensus 239 ~~~~lA~~IE~alf~~~~~~~~~--Yk~k~Rsl~~NLkd~kN~~Lr~~vl~G~i~p~~l~~Ms~eEmas~e~k~~~~~~~ 316 (376)
++..+|.+||.+||+.|++++.. |+++||+|+|||||++||+||++||.|+|+|.+||.|+++||||+|++++++++.
T Consensus 170 ~~~~~A~~IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasde~k~~~~~~~ 249 (309)
T 1pqv_S 170 SILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIA 249 (309)
T ss_pred hHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCcCCChHHHHHHHcCCCCHHHHhcCCHHHhCCHHHHHHHHHHH
Confidence 45689999999999999887777 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCccccccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccccC
Q 017145 317 EKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376 (376)
Q Consensus 317 ee~l~~~~~~~~~~~~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wkfc 376 (376)
+++|++++++..+..+++.+.||+||+++|+|||+|+||||||||+||+|++|||+|+||
T Consensus 250 ~e~l~~~~~~~~~~~~~~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~fc 309 (309)
T 1pqv_S 250 KQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKFS 309 (309)
T ss_pred HHHHHHhhhccccccCcccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCceecC
Confidence 999999999888888888999999999999999999999999999999999999999999
No 2
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=100.00 E-value=1.2e-52 Score=377.89 Aligned_cols=169 Identities=33% Similarity=0.594 Sum_probs=151.4
Q ss_pred cccccCCchhHHHHHHHHHHHHhhhhccChhhhhhhhcccChHHHHHHHHHHHHHHhCC-Cch-hhhHHHHHHHhhccCC
Q 017145 199 TQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGR-STG-AEKLKYRSIMFNIRDE 276 (376)
Q Consensus 199 ~~~~~~~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~lA~~IE~alf~~~~~-~~~-~Yk~k~Rsl~~NLkd~ 276 (376)
++++.++|++|++|+++|++||.....+.+. ++..+|.+||.+||+.|++ ++. .|++++|||+|||||+
T Consensus 8 v~~~~~~d~vRdk~~~lL~~aL~~~~~~~~~---------~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd~ 78 (178)
T 3po3_S 8 VDTAIYHHKLRDQVLKALYDVLAKESEHPPQ---------SILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISK 78 (178)
T ss_dssp -------CHHHHHHHHHHHHHTTSSSSCSTT---------HHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHSS
T ss_pred cCcCcCCChHHHHHHHHHHHHHhcCCCCchh---------hHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCCC
Confidence 3456789999999999999999975544332 3458999999999999987 454 7999999999999999
Q ss_pred CChhhhhchhcCCCChhhhccCChhhcCcHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCCcceEEEEEeccCC
Q 017145 277 KNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSA 356 (376)
Q Consensus 277 kN~~Lr~~vl~G~i~p~~l~~Ms~eEmas~e~k~~~~~~~ee~l~~~~~~~~~~~~t~~~~C~~C~~~~~~~~q~qtrsa 356 (376)
+||+|+++||+|+|+|.+||.|+++||||+|++++++++++++|++++.+..+.++|+.+.||+||+++|+|+|+|+|||
T Consensus 79 ~N~~Lr~~vl~g~isp~~lv~Ms~eElas~elk~~~e~~~~e~l~~~~~~~~~~~~t~~~~Cp~C~~~~a~~~q~Q~rsa 158 (178)
T 3po3_S 79 NNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSA 158 (178)
T ss_dssp SCSHHHHHHHHCCCTTHHHHCCTTTTSSCSHHHHHHHHHHHHHHHHTBCCCCCCCCBSSSCCSSSCCSCEECCCCCCSCT
T ss_pred CCHHHHHHHhcCCCCHHHHHhcCchhhCCHHHHHHHHHHHHHHHHHhhhccccCCCcCCcCCCCCCCCceEEEEeecccC
Confidence 99999999999999999999999999999999999999999999999988888888899999999999999999999999
Q ss_pred CCCCeEEEEcCCCCCccccC
Q 017145 357 DEPMTTYVTCVNCSKRWKFC 376 (376)
Q Consensus 357 DEpmt~f~~C~~C~~~Wkfc 376 (376)
|||||+||+|++|||+|+||
T Consensus 159 DE~mt~f~~C~~C~~~w~f~ 178 (178)
T 3po3_S 159 AAPLTTFCTCEACGNRWKFS 178 (178)
T ss_dssp TSCCCCCEEETTTCCEECCC
T ss_pred CCCCcEEEEcCCCCCeeccC
Confidence 99999999999999999999
No 3
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.96 E-value=3.5e-31 Score=221.14 Aligned_cols=108 Identities=34% Similarity=0.525 Sum_probs=95.3
Q ss_pred cccCCchhHHHHHHHHHHHHhhhhccChhhhhhhhcccChHHHHHHHHHHHHHHhCCCchhhhHHHHHHHhhccCCCChh
Q 017145 201 LIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPD 280 (376)
Q Consensus 201 ~~~~~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~lA~~IE~alf~~~~~~~~~Yk~k~Rsl~~NLkd~kN~~ 280 (376)
.+.++|++|++||++|++||.... +.. ....++..+|.+||.+||..|+.++++||+++|||+|||||++||+
T Consensus 5 ~p~t~D~vRdk~~e~L~~aL~~~~-----~~~--~~~~~~~~~A~~IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~Np~ 77 (113)
T 2lw4_A 5 VPVTCDAVRNKCREMLTAALQTDH-----DHV--AIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPD 77 (113)
T ss_dssp SCCCCSTTHHHHHHHHHHHHHSST-----HHH--HHTCCHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSSSH
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCC-----Ccc--cccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHH
Confidence 456899999999999999998421 111 1234677999999999999999989999999999999999999999
Q ss_pred hhhchhcCCCChhhhccCChhhcCcHHHHHHHHHH
Q 017145 281 LRKRVLLGEVTPERLVTMSPEEMASDERQRQIENI 315 (376)
Q Consensus 281 Lr~~vl~G~i~p~~l~~Ms~eEmas~e~k~~~~~~ 315 (376)
||++||+|+|+|++||.|+++||||+|+|++|+++
T Consensus 78 Lr~~vl~G~i~p~~l~~Ms~eEmAs~elk~~r~~~ 112 (113)
T 2lw4_A 78 LRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAM 112 (113)
T ss_dssp HHHHHHTTSSCHHHHHHSCHHHHHCTTTTTCSSSC
T ss_pred HHHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHc
Confidence 99999999999999999999999999999887764
No 4
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.95 E-value=4e-29 Score=207.19 Aligned_cols=100 Identities=36% Similarity=0.512 Sum_probs=85.5
Q ss_pred cccCCchhHHHHHHHHHHHHhhhhccChhhhhhhhcccChHHHHHHHHHHHHHHhCCCchhhhHHHHHHHhhccCCCChh
Q 017145 201 LIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPD 280 (376)
Q Consensus 201 ~~~~~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~lA~~IE~alf~~~~~~~~~Yk~k~Rsl~~NLkd~kN~~ 280 (376)
.+.++|++|++||++|++||.... +..+ ...++..+|.+||.+||+.|+.++.+||+++|||+|||||++||+
T Consensus 9 ~~~t~d~vR~k~~~lL~~aL~~~~-----d~~~--~~~~~~~lA~~IE~~if~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~ 81 (108)
T 3ndq_A 9 APSTSDSVRLKCREMLAAALRTGD-----DYIA--IGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPN 81 (108)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTGGG-----HHHH--HTCCHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTCTTCHH
T ss_pred CCCCCChHHHHHHHHHHHHHHcCC-----CCCc--ccccHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHH
Confidence 456899999999999999998532 1111 134677999999999999999888999999999999999999999
Q ss_pred hhhchhcCCCChhhhccCChhhcCcHH
Q 017145 281 LRKRVLLGEVTPERLVTMSPEEMASDE 307 (376)
Q Consensus 281 Lr~~vl~G~i~p~~l~~Ms~eEmas~e 307 (376)
||++||+|+|+|++||.|+++||||+|
T Consensus 82 Lr~~vl~G~isp~~lv~Ms~eEmAS~E 108 (108)
T 3ndq_A 82 LRKNVLCGNIPPDLFARMTAEEMASDE 108 (108)
T ss_dssp HHHHHHHTSSCHHHHHHCCTTTC----
T ss_pred HHHHHHcCCcCHHHHhCCCHHHccCCC
Confidence 999999999999999999999999986
No 5
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=6.4e-29 Score=209.65 Aligned_cols=109 Identities=36% Similarity=0.501 Sum_probs=95.4
Q ss_pred CCchhHHHHHHHHHHHHhhhhccChhhhhhhhcccChHHHHHHHHHHHHHHhCCCchhhhHHHHHHHhhccCCCChhhhh
Q 017145 204 CNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRK 283 (376)
Q Consensus 204 ~~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~lA~~IE~alf~~~~~~~~~Yk~k~Rsl~~NLkd~kN~~Lr~ 283 (376)
++|.+|++||++|+++|...+.+.+.. . ..+++..+|.+||.+||+.|+.++.+|++++|||+|||||++||+||+
T Consensus 8 ~~d~~Rd~~r~~L~eaL~~~~~~~~~~-~---~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~ 83 (120)
T 2dme_A 8 SADQIRQSVRHSLKDILMKRLTDSNLK-V---PEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFK 83 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTCC-C---CHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSHHH
T ss_pred CCchHHHHHHHHHHHHHHHhccccccc-c---chhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 458999999999999999876654211 0 112456899999999999999888899999999999999999999999
Q ss_pred chhcCCCChhhhccCChhhcCcHHHHHHHHHHH
Q 017145 284 RVLLGEVTPERLVTMSPEEMASDERQRQIENIK 316 (376)
Q Consensus 284 ~vl~G~i~p~~l~~Ms~eEmas~e~k~~~~~~~ 316 (376)
+||+|+|+|++||.|+++||||+|++++++++.
T Consensus 84 ~vl~G~i~p~~lv~Ms~eEmAS~elk~~r~~~~ 116 (120)
T 2dme_A 84 KVLKGEVTPDHLIRMSPEELASKELAAWRRRSG 116 (120)
T ss_dssp HHHHTSSCTTHHHHSCTTTTTTCCSTTTCTTCC
T ss_pred HHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHHh
Confidence 999999999999999999999999999887653
No 6
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.85 E-value=3.5e-22 Score=142.82 Aligned_cols=48 Identities=58% Similarity=1.239 Sum_probs=45.3
Q ss_pred CccccccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccccC
Q 017145 329 ATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 376 (376)
Q Consensus 329 ~~~~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wkfc 376 (376)
+.++++.+.||+||+++++|+|+|+||||||||+||+|.+|||+|+||
T Consensus 3 ~~~~t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~~~ 50 (50)
T 1tfi_A 3 GGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 50 (50)
T ss_dssp SCEECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEECC
T ss_pred CCceeCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEEeC
Confidence 346678899999999999999999999999999999999999999998
No 7
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=99.73 E-value=1.4e-18 Score=142.52 Aligned_cols=79 Identities=23% Similarity=0.442 Sum_probs=69.1
Q ss_pred ChhHHHHHHHHHHHHHhHhhhcCCCCCCCCHHHHHHHHHHhcCCCCCHHhhhcCccceecccccCC-CCHHHHHHHHHHH
Q 017145 1 MEQELVELFDAAKKAADSAAIDGVSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKH-PREKIQIVASNLL 79 (376)
Q Consensus 1 ~e~e~~el~~~a~k~a~~~~~~~~~~~~~~~~~~l~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh-~~~~I~~~Ak~Lv 79 (376)
||.|++++++...++++.. +.+.|+++|++|+.++||+++|++|+||++||+|||| ++++|+.+|+.||
T Consensus 10 ~e~ev~~i~k~L~k~~~~~----------~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv 79 (103)
T 1wjt_A 10 LEEELLRIAKKLEKMVSRK----------KTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLI 79 (103)
T ss_dssp SHHHHHHHHHHHHHHHHTT----------CCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcC----------CHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHH
Confidence 4677888777777765421 3468999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHhh
Q 017145 80 DIWKKIVIEE 89 (376)
Q Consensus 80 ~~WK~~v~~~ 89 (376)
++||++|...
T Consensus 80 ~~WK~~v~~~ 89 (103)
T 1wjt_A 80 KNWKRLLDSP 89 (103)
T ss_dssp HHHHHHTCCS
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 8
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.69 E-value=1.2e-17 Score=122.79 Aligned_cols=46 Identities=35% Similarity=0.910 Sum_probs=42.9
Q ss_pred CccccccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 329 ATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 329 ~~~~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
+.++++.++||+||+.+++|+|+|+||||||||+||+|.+|||+|+
T Consensus 9 ~~~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 9 KTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp SSSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred hcCCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 4456678999999999999999999999999999999999999997
No 9
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.66 E-value=4.3e-17 Score=136.08 Aligned_cols=49 Identities=29% Similarity=0.626 Sum_probs=46.2
Q ss_pred cCCCccccccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 326 GGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 326 ~~~~~~~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
+.+++++++.+.||+||+++++|+|+|+||||||||+||+|.+|||+|+
T Consensus 63 ~~~~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 63 STDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp TTCSSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred cccccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 4567888888999999999999999999999999999999999999997
No 10
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=99.63 E-value=1.1e-16 Score=135.33 Aligned_cols=48 Identities=25% Similarity=0.655 Sum_probs=45.1
Q ss_pred CCCccccccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 327 GEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 327 ~~~~~~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
.+++++++.+.||+||+++++|+|+|+||||||||+||+|.+|||+|+
T Consensus 64 ~~~t~p~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~ 111 (122)
T 1twf_I 64 SDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFT 111 (122)
T ss_dssp GCTTSCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEE
T ss_pred ccccccccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEec
Confidence 356778888999999999999999999999999999999999999997
No 11
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.6e-17 Score=139.97 Aligned_cols=49 Identities=47% Similarity=1.015 Sum_probs=0.0
Q ss_pred cCCCccccccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 326 GGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 326 ~~~~~~~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
..+++++++.+.||+||+++++|||+|+||||||||+||+|.+|||+|+
T Consensus 83 ~~dptlp~t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 83 GSDPTLPRSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWK 131 (133)
T ss_dssp -------------------------------------------------
T ss_pred cccccCCcccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeC
Confidence 4567888889999999999999999999999999999999999999997
No 12
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=97.61 E-value=3.9e-05 Score=66.19 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHhcCCCCCHHhhhcCccceecccccCCC--CHHHHHHHHHHHHHHHHHHH
Q 017145 29 PEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHP--REKIQIVASNLLDIWKKIVI 87 (376)
Q Consensus 29 ~~~~~~l~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh~--~~~I~~~Ak~Lv~~WK~~v~ 87 (376)
|...---.+|+-|..+||+.+.|+.++||++|..|.+|+ .++++.+|..||.+|...+.
T Consensus 79 P~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi~ 139 (145)
T 2xpp_A 79 PNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVF 139 (145)
T ss_dssp CCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHHh
Confidence 344555677888888999999999999999999999997 48999999999999999875
No 13
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=97.42 E-value=4.3e-05 Score=67.43 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHhcCCCCCHHhhhcCccceecccccCCCC--HHHHHHHHHHHHHHHHHHH
Q 017145 30 EVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPR--EKIQIVASNLLDIWKKIVI 87 (376)
Q Consensus 30 ~~~~~l~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh~~--~~I~~~Ak~Lv~~WK~~v~ 87 (376)
...-=-.+|+-|..+||+.+.|..++||++|..|.+|+. ++++.+|..||.+|-.-+.
T Consensus 95 ~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI~ 154 (170)
T 3nfq_A 95 SFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPII 154 (170)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHHh
Confidence 344445677777888999999999999999999999974 8899999999999977663
No 14
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=96.91 E-value=0.0012 Score=52.89 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=64.7
Q ss_pred ChhHHHHHHHHHHHHHhHhhhcCCCCCCCCHHHHHHHHHHhcCCCCCHHhh-hcCccceecccccCC-CCHHHHHHHHHH
Q 017145 1 MEQELVELFDAAKKAADSAAIDGVSSGGPEVSRCVDALKRLKSFPVTYDVL-VSTQVGKRLRPLTKH-PREKIQIVASNL 78 (376)
Q Consensus 1 ~e~e~~el~~~a~k~a~~~~~~~~~~~~~~~~~~l~~L~~L~~~~it~~~L-~~T~iG~~V~~Lrkh-~~~~I~~~Ak~L 78 (376)
||+.|++|...-+-+-... +++..+|+++|.+|.++++|.-+| +.+.+--++.+||+. .+..|+..|..|
T Consensus 4 ~E~~l~~L~~~ik~~L~~~--------~~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~i 75 (98)
T 2b4j_C 4 MDSRLQRIHAEIKNSLKID--------NLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTML 75 (98)
T ss_dssp HHHHHHHHHHHHHHHTCTT--------SCCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC--------CCCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 5788888887776655433 478999999999999999999755 566688899999886 589999999999
Q ss_pred HHHHHHHHH
Q 017145 79 LDIWKKIVI 87 (376)
Q Consensus 79 v~~WK~~v~ 87 (376)
+.+.|.++.
T Consensus 76 Y~kfK~~f~ 84 (98)
T 2b4j_C 76 YNKFKNMFL 84 (98)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 999999985
No 15
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=96.79 E-value=0.0013 Score=55.14 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHHHHhHhhhcCCCCCCCCHHHHHHHHHHhcCCCCCHHhh-hcCccceecccccCC-CCHHHHHHHHHH
Q 017145 1 MEQELVELFDAAKKAADSAAIDGVSSGGPEVSRCVDALKRLKSFPVTYDVL-VSTQVGKRLRPLTKH-PREKIQIVASNL 78 (376)
Q Consensus 1 ~e~e~~el~~~a~k~a~~~~~~~~~~~~~~~~~~l~~L~~L~~~~it~~~L-~~T~iG~~V~~Lrkh-~~~~I~~~Ak~L 78 (376)
||+.|++|...-+-+-.+. +++..+|+++|.+|.++++|.-+| +.+.|--++.+||+. .|..|+..|..|
T Consensus 4 ~E~~L~~L~~~Ik~~L~v~--------~~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~i 75 (127)
T 1z9e_A 4 MDSRLQRIHAEIKNSLKID--------NLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTML 75 (127)
T ss_dssp HHHHHHHHHHHHHHHTCGG--------GCCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC--------CCCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5788888887777765554 368999999999999999999755 566788899999886 478899999999
Q ss_pred HHHHHHHHH
Q 017145 79 LDIWKKIVI 87 (376)
Q Consensus 79 v~~WK~~v~ 87 (376)
+.+.|.++.
T Consensus 76 Y~kFK~lf~ 84 (127)
T 1z9e_A 76 YNKFKNMFL 84 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999996
No 16
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=92.65 E-value=0.096 Score=34.14 Aligned_cols=31 Identities=16% Similarity=0.485 Sum_probs=25.5
Q ss_pred cccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 337 ~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
.|+.|+++++.+.-. . -..|..|..||++|-
T Consensus 2 lC~~C~~peT~l~~~-~------~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIKE-G------RVHLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEEE-T------TEEEEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEEe-C------CcEEEEhhcCCCccc
Confidence 599999999987652 2 378899999999875
No 17
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=88.53 E-value=0.11 Score=43.55 Aligned_cols=30 Identities=20% Similarity=0.636 Sum_probs=22.7
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
+.-.||+|+...++- | -..|+|..|+|.|.
T Consensus 26 ~lP~CP~C~seytYe--------D---g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 26 TLPPCPQCNSEYTYE--------D---GALLVCPECAHEWS 55 (138)
T ss_dssp CSCCCTTTCCCCCEE--------C---SSSEEETTTTEEEC
T ss_pred cCCCCCCCCCcceEe--------c---CCeEECCccccccC
Confidence 356899999887742 2 22489999999994
No 18
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=87.55 E-value=0.34 Score=46.49 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=27.1
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcccc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wkf 375 (376)
..-.||-||..-..- .+..+ .++.-..|..|.-||+.|+|
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~-g~~~G~R~l~Cs~C~t~W~~ 220 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQG-GKETGLRYLSCSLCACEWHY 220 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC-----CCEEEEEETTTCCEEEC
T ss_pred cCCCCCCCCCcCcee-EEeec-CCCCCcEEEEeCCCCCEEee
Confidence 356799999876644 33322 23334679999999999996
No 19
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=80.99 E-value=1.7 Score=33.64 Aligned_cols=37 Identities=27% Similarity=0.626 Sum_probs=27.5
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
..|.||.|++.++.--.+- | ..++-.+.|..||.++.
T Consensus 22 t~F~CPfCnh~~sV~vkid-k---~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMD-R---ARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEE-T---TTTEEEEEESSSCCEEE
T ss_pred CeEcCCCCCCCCeEEEEEE-c---cCCEEEEEcccCCCeEE
Confidence 5899999999975544442 1 24588899999998765
No 20
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=80.61 E-value=1.4 Score=34.02 Aligned_cols=31 Identities=23% Similarity=0.550 Sum_probs=22.2
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
...+.||.||.. ..|... +-.+.|..||+.|
T Consensus 25 ~~~y~Cp~CG~~-~v~r~a---------tGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 25 NEDHACPNCGED-RVDRQG---------TGIWQCSYCDYKF 55 (83)
T ss_dssp HSCEECSSSCCE-EEEEEE---------TTEEEETTTCCEE
T ss_pred cccCcCCCCCCc-ceeccC---------CCeEECCCCCCEe
Confidence 357899999974 333332 3488999999974
No 21
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=79.63 E-value=1.1 Score=30.86 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=21.4
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
..+.||.||.....|.. -+.-++|..||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~---------~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDP---------ERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEET---------TTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcC---------CCCeEECcccCCcc
Confidence 35689999986554421 23358999999854
No 22
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=77.38 E-value=0.67 Score=34.19 Aligned_cols=29 Identities=24% Similarity=0.717 Sum_probs=24.2
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
+.+||.|++..+.|-..|+ -+.|..||..
T Consensus 7 ~VKCp~C~niq~VFShA~t---------vV~C~~Cg~~ 35 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPST---------IVKCIICGRT 35 (66)
T ss_dssp EEECTTTCCEEEEESSCSS---------CEECSSSCCE
T ss_pred EEECCCCCCceEEEecCce---------EEEcccCCCE
Confidence 5699999999999987664 5889999864
No 23
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=74.25 E-value=0.84 Score=36.44 Aligned_cols=36 Identities=31% Similarity=0.602 Sum_probs=28.5
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
-.|+|..|+.+....+-.| |=+--++|+.|..|.++
T Consensus 12 l~FTC~~C~tRs~k~iSk~---aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 12 IAFTCKKCNTRSSHTMSKQ---AYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEEETTTTEEEEEEEEHH---HHHTSEEEEECTTTCCE
T ss_pred EEEEccCCCCcchhhcCHH---HhhCCEEEEEcCCCccc
Confidence 3799999999988766554 33445999999999987
No 24
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=72.92 E-value=2.7 Score=36.73 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=26.0
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
-+.|+.|+++++.+.--. +.-..|..|..||++.
T Consensus 96 YVlC~~C~sPdT~L~k~~-----~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 96 FVLCPECENPETDLHVNP-----KKQTIGNSCKACGYRG 129 (170)
T ss_dssp HHSCTTTSSSCEEEEEET-----TTTEEEEEETTTCCCC
T ss_pred eEECCCCCCCccEEEEec-----CCCEEEEEccccCCcc
Confidence 357999999999886521 2347899999999864
No 25
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.60 E-value=1.1 Score=32.81 Aligned_cols=29 Identities=28% Similarity=0.701 Sum_probs=24.0
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
+.+|+.|++..+.|-..|+ -+.|..||..
T Consensus 15 ~VkCp~C~~~q~VFSha~t---------~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPAT---------KVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEESSCSS---------CEECSSSCCE
T ss_pred EEECCCCCCeeEEEecCCe---------EEEccCcCCE
Confidence 5699999999999877654 5889999863
No 26
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.34 E-value=2.6 Score=36.42 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=25.8
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
-+.|+.|+++++.+.-- .+.-..|..|..||++-
T Consensus 103 YVlC~~C~sPdT~L~~~-----~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 103 FVLCPECENPETDLHVN-----PKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TTSCTTTCCSCCEEEEE-----TTTTEEEEECSSSCCEE
T ss_pred eEECCCCCCCccEEEEe-----cCCCEEEEEccCCCCCC
Confidence 45799999999987642 12338899999999863
No 27
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=70.15 E-value=1.1 Score=34.27 Aligned_cols=29 Identities=24% Similarity=0.648 Sum_probs=23.8
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
+.+|+.|++..+.|-..| +.|.|..||..
T Consensus 32 ~VkCp~C~n~q~VFShA~---------t~V~C~~Cg~~ 60 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFSNAQ---------STIICEKCSAI 60 (81)
T ss_dssp EEECSSSCCEEEEETTCS---------SCEECSSSCCE
T ss_pred EeECCCCCCeeEEEecCc---------cEEEccCCCCE
Confidence 459999999999987655 46899999964
No 28
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=69.41 E-value=0.78 Score=35.58 Aligned_cols=29 Identities=28% Similarity=0.569 Sum_probs=23.8
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
..+|+.|++..+.|-..|| .|.|..||..
T Consensus 36 ~VkCp~C~~~~~VFShA~t---------~V~C~~Cgtv 64 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQT---------VVVCPGCQTV 64 (86)
T ss_dssp EEECTTTCCEEEEETTCSS---------CCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCCc---------EEEccCCCCE
Confidence 5799999999999877654 6889999864
No 29
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=67.34 E-value=22 Score=28.95 Aligned_cols=37 Identities=19% Similarity=0.492 Sum_probs=23.6
Q ss_pred cccccccCC-----cceEEEEEeccCCCCCCeEEEEcCCCCCcccc
Q 017145 335 QFKCSRCGQ-----RKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375 (376)
Q Consensus 335 ~~~C~~C~~-----~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wkf 375 (376)
..-|.+|+. ..++.... +.--| .+.++|..||+.-+|
T Consensus 65 R~~Ck~C~s~LiPG~t~~vri~---~~~~~-~vv~tCl~Cg~~kR~ 106 (120)
T 1x0t_A 65 RRYCKRCHTFLIPGVNARVRLR---TKRMP-HVVITCLECGYIMRY 106 (120)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEE---CSSSC-EEEEEETTTCCEEEE
T ss_pred HHhccCCCCEeECCCceEEEEe---cCCcc-EEEEECCCCCCEEEE
Confidence 447999986 33443322 21112 688899999998665
No 30
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.77 E-value=3.7 Score=39.27 Aligned_cols=41 Identities=24% Similarity=0.556 Sum_probs=27.6
Q ss_pred ccccccccCCc-ceEEEEEeccC--CCCCCeEEEEcCCCCCccc
Q 017145 334 DQFKCSRCGQR-KCTYYQMQTRS--ADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 334 ~~~~C~~C~~~-~~~~~q~qtrs--aDEpmt~f~~C~~C~~~Wk 374 (376)
...+|+.||+. +..|+.+-.-+ ++++.....+|..|++.+|
T Consensus 221 ~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 221 VRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp CTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 45689999974 44444442100 1457789999999999887
No 31
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=64.97 E-value=23 Score=29.03 Aligned_cols=37 Identities=19% Similarity=0.435 Sum_probs=23.5
Q ss_pred cccccccCC-----cceEEEEEeccCCCCCCeEEEEcCCCCCcccc
Q 017145 335 QFKCSRCGQ-----RKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375 (376)
Q Consensus 335 ~~~C~~C~~-----~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wkf 375 (376)
..-|.+|+. ..++......+ .-.+.++|..||+.-+|
T Consensus 60 R~~Ck~C~s~LIPG~t~~vri~~~~----k~~vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 60 RRYCKKCHAFLVPGINARVRLRQKR----MPHIVVKCLECGHIMRY 101 (123)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEECSS----SCEEEEEETTTTEEEEE
T ss_pred HHhccCCCCEeECCCceEEEEecCC----ccEEEEECCCCCCEEEE
Confidence 447999986 33444322211 12688899999997665
No 32
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=64.44 E-value=11 Score=28.36 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=22.9
Q ss_pred ccccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 332 TTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 332 ~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
+...+.||.||+..+. .+ .+-...|..|+..|
T Consensus 24 q~~ky~C~fCgk~~vk-R~---------a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 24 HKKKYKCPVCGFPKLK-RA---------STSIWVCGHCGYKI 55 (73)
T ss_pred cccCccCCCCCCceeE-EE---------EeEEEECCCCCcEE
Confidence 3467889999976442 11 26689999999874
No 33
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=63.92 E-value=1.6 Score=33.51 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=24.2
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
+.+|+.|++..+.|-..|+ -|.|..||..
T Consensus 34 ~VkCp~C~~~q~VFSha~t---------~V~C~~Cg~~ 62 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQT---------AVTCESCSTI 62 (82)
T ss_dssp EEECTTSCSCEEEESBCSS---------CCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCCe---------EEEccccCCE
Confidence 6799999999999987764 5789999864
No 34
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=63.66 E-value=2.4 Score=35.77 Aligned_cols=31 Identities=13% Similarity=0.482 Sum_probs=24.5
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
-..|+.|+++++.+.- -. -..|..|..||++
T Consensus 102 yVlC~~C~sPdT~l~k-~~------r~~~l~C~ACGa~ 132 (138)
T 1nee_A 102 FVICHECNRPDTRIIR-EG------RISLLKCEACGAK 132 (138)
T ss_dssp HHHHTCCSSCSSCCEE-ET------TTTEEECSTTSCC
T ss_pred EEECCCCCCcCcEEEE-cC------CeEEEEccCCCCC
Confidence 4579999999987763 22 3689999999986
No 35
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=60.70 E-value=1.7 Score=37.15 Aligned_cols=33 Identities=15% Similarity=0.439 Sum_probs=25.3
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
-+.|+.|+++++.+.- +.-..|..|..||.++-
T Consensus 104 yVlC~~C~sPdT~L~k-------~~r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 104 YVICPVCGSPDTKIIK-------RDRFHFLKCEACGAETP 136 (148)
T ss_dssp HSSCSSSCCTTCCCCB-------SSSSBCCCCSSSCCCCC
T ss_pred EEECCCCCCcCcEEEE-------eCCEEEEEecCCCCCcc
Confidence 3679999999986652 22378888999998763
No 36
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=59.54 E-value=7.8 Score=31.13 Aligned_cols=72 Identities=15% Similarity=0.389 Sum_probs=41.7
Q ss_pred cCCCChhhhccCChhh-cCcHH-HHHHHHHHHHHHHHHhhhcCCCccccccccccccCCcceEEEEEeccCCCCCCeEEE
Q 017145 287 LGEVTPERLVTMSPEE-MASDE-RQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYV 364 (376)
Q Consensus 287 ~G~i~p~~l~~Ms~eE-mas~e-~k~~~~~~~ee~l~~~~~~~~~~~~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~ 364 (376)
.+-+++.+|+.+-..+ +...+ .-...+.|.+ .+ ......+....+.|.+||.. | ++.+..=.
T Consensus 22 ~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIak-sl----~r~g~~L~v~p~~C~~CG~~---F--------~~~~~kPs 85 (105)
T 2gmg_A 22 EGDYSPSELARILDMRGKGSKKVILEDLKVISK-IA----KREGMVLLIKPAQCRKCGFV---F--------KAEINIPS 85 (105)
T ss_dssp TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHH-HH----TTTTEEEEECCCBBTTTCCB---C--------CCCSSCCS
T ss_pred cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHH-HH----hcCCcEEEEECcChhhCcCe---e--------cccCCCCC
Confidence 4567888886554332 34444 3333333332 11 12223466778999999987 2 23445557
Q ss_pred EcCCCCCccc
Q 017145 365 TCVNCSKRWK 374 (376)
Q Consensus 365 ~C~~C~~~Wk 374 (376)
.|..|+-.|-
T Consensus 86 rCP~CkSe~I 95 (105)
T 2gmg_A 86 RCPKCKSEWI 95 (105)
T ss_dssp SCSSSCCCCB
T ss_pred CCcCCCCCcc
Confidence 8999998883
No 37
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=58.57 E-value=5.1 Score=28.56 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=19.2
Q ss_pred ccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 336 FKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 336 ~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
..||.||.....|- .-+--++|..||..
T Consensus 12 ~~Cp~C~~~~lv~D---------~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILVED---------YRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCEEC---------SSSCCEECTTTCCE
T ss_pred ccCcCCCCCceeEe---------CCCCeEEeCCCCCE
Confidence 37999999775441 12334899999964
No 38
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=58.37 E-value=5.2 Score=29.79 Aligned_cols=30 Identities=27% Similarity=0.723 Sum_probs=19.9
Q ss_pred ccccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 332 TTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 332 ~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
....+.|+.||..--. ..+++ +.|..||+|
T Consensus 25 ~~v~Y~C~~CG~~~e~-------~~~d~----irCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSKLSL-------SRTDA----VRCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCEECC-------CTTST----TCCSSSCCC
T ss_pred ceEEEECCCCCCccee-------CCCCC----ccCCCCCce
Confidence 4457899999986431 12222 379999995
No 39
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.82 E-value=9.6 Score=29.30 Aligned_cols=31 Identities=19% Similarity=0.568 Sum_probs=22.5
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
...+.||.||+..+. .+ -+-...|..|+..|
T Consensus 33 ~~ky~CpfCGk~~vk-R~---------a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 33 RQKHTCPVCGRKAVK-RI---------STGIWQCQKCGATF 63 (83)
T ss_dssp HSCBCCSSSCSSCEE-EE---------ETTEEEETTTCCEE
T ss_pred hcccCCCCCCCceeE-ec---------CcCeEEcCCCCCEE
Confidence 356889999988642 11 25588999999875
No 40
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=52.13 E-value=13 Score=29.16 Aligned_cols=31 Identities=19% Similarity=0.465 Sum_probs=22.4
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
...+.||.||+..+. .+ -+-...|..|+..|
T Consensus 34 ~~ky~CpfCgk~~vk-R~---------a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 34 HSKYFCEFCGKFAVK-RK---------AVGIWGCKDCGKVK 64 (92)
T ss_dssp HSCBCCTTTCSSCBE-EE---------ETTEEECSSSCCEE
T ss_pred hccccCcccCCCeeE-ec---------CcceEEcCCCCCEE
Confidence 356789999988642 11 25588999999875
No 41
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=51.84 E-value=12 Score=30.47 Aligned_cols=31 Identities=23% Similarity=0.603 Sum_probs=21.7
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
...+.||.||+.. ...+. +-...|..|+..|
T Consensus 58 ~akytCPfCGk~~-vKR~a---------vGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 58 NEDHACPNCGEDR-VDRQG---------TGIWQCSYCDYKF 88 (116)
T ss_dssp HSCEECSSSCCEE-EEEEE---------TTEEEETTTCCEE
T ss_pred ccCCcCCCCCCce-eEecC---------ceeEECCCCCCEE
Confidence 3578899999743 22222 3488999999874
No 42
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=50.71 E-value=8.3 Score=32.85 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=22.6
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCC
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCS 370 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~ 370 (376)
..+..|..||.+...|-.+- .-.|+|..|.
T Consensus 36 p~N~~CaDCga~~P~WaS~n--------lGvfiC~~CS 65 (147)
T 3dwd_A 36 DENNVCFECGAFNPQWVSVT--------YGIWICLECS 65 (147)
T ss_dssp TTTTBCTTTCCBSCCEEETT--------TTEEECHHHH
T ss_pred cCCCccCCCCCCCCCeEEec--------ccEeEhHhhC
Confidence 35678999999998887653 2367888885
No 43
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=48.41 E-value=13 Score=29.60 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=25.1
Q ss_pred ccccccCCcceEEEEEeccCCCC--C-CeEEEEcCCCCCc
Q 017145 336 FKCSRCGQRKCTYYQMQTRSADE--P-MTTYVTCVNCSKR 372 (376)
Q Consensus 336 ~~C~~C~~~~~~~~q~qtrsaDE--p-mt~f~~C~~C~~~ 372 (376)
.-|..|+++.-...+.++-.-++ . .|.--.|.+|+|.
T Consensus 27 ~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~nC~Hv 66 (106)
T 2jox_A 27 TGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHV 66 (106)
T ss_dssp CCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred hhhhhcCCCceEEEeccccccCCCcEEEEEEEecCCCceE
Confidence 47999999996666666643332 2 3444469999974
No 44
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=48.19 E-value=11 Score=22.16 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhh
Q 017145 75 ASNLLDIWKKIVIEE 89 (376)
Q Consensus 75 Ak~Lv~~WK~~v~~~ 89 (376)
--++|..||++|.+.
T Consensus 11 qlemitawkkfveek 25 (28)
T 1nwd_B 11 QLEMITAWKKFVEEK 25 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 357899999999865
No 45
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=48.07 E-value=8 Score=28.87 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=22.1
Q ss_pred ccccccCCcceEEE--EEeccCCCC----CCeEEEEcCCCCCccc
Q 017145 336 FKCSRCGQRKCTYY--QMQTRSADE----PMTTYVTCVNCSKRWK 374 (376)
Q Consensus 336 ~~C~~C~~~~~~~~--q~qtrsaDE----pmt~f~~C~~C~~~Wk 374 (376)
.+||-||......- ..-..-... +..-.+.|..||..|-
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEEC
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEE
Confidence 47999997644221 111111222 2345788999998873
No 46
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=47.68 E-value=16 Score=28.60 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=22.2
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
...+.||.||+..+. .+ .+-...|..|+..|
T Consensus 34 ~~ky~CpfCgk~~vk-R~---------a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 34 HARYDCSFCGKKTVK-RG---------AAGIWTCSCCKKTV 64 (92)
T ss_dssp HSCCCCSSSCSSCCE-EE---------ETTEEECTTTCCEE
T ss_pred hcCCcCCCCCCceee-ec---------ccceEEcCCCCCEE
Confidence 357889999987642 11 15588999999875
No 47
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=44.83 E-value=8.5 Score=35.37 Aligned_cols=33 Identities=27% Similarity=0.639 Sum_probs=21.2
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
..-||.||+..-.-|..-...|| |.|.+|+..+
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaD------F~C~~C~Eey 66 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVAD------FYCNHCSEEF 66 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCE------EECTTTCCEE
T ss_pred CCcCCCCCChhhhhccCCCcccc------cccCCcchhh
Confidence 45699999987765555444444 6699999765
No 48
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=44.68 E-value=14 Score=29.46 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=22.1
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
...+.||.||+..+. .+ -+-...|..|+..|
T Consensus 34 ~aky~CpfCgk~~vK-R~---------a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVK-RA---------AVGIWKCKPCKKII 64 (103)
T ss_dssp HSCEECTTTCCEEEE-EE---------ETTEEEETTTTEEE
T ss_pred hcCCCCCCCCCceee-ec---------CcceEEcCCCCCEE
Confidence 357889999987532 11 15588999999865
No 49
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=43.62 E-value=9.4 Score=35.52 Aligned_cols=39 Identities=23% Similarity=0.541 Sum_probs=24.2
Q ss_pred CccccccccccccCCcceEEEEEecc-CCCCCCeEEEEcCCCCCc-cc
Q 017145 329 ATATTDQFKCSRCGQRKCTYYQMQTR-SADEPMTTYVTCVNCSKR-WK 374 (376)
Q Consensus 329 ~~~~t~~~~C~~C~~~~~~~~q~qtr-saDEpmt~f~~C~~C~~~-Wk 374 (376)
|.+....|.|.+||+. .++-|+. .-.+|. .|.+|+.+ |.
T Consensus 128 p~~~~~~f~C~~C~~~---~~v~~~~~~~~~P~----~Cp~C~~~~f~ 168 (279)
T 1ltl_A 128 PRIVKAVFECRGCMRH---HAVTQSTNMITEPS----LCSECGGRSFR 168 (279)
T ss_dssp EEEEEEEEEETTTCCE---EEEECSSSSCCCCS----CCTTTCCCCEE
T ss_pred EEEEEEEEEcCCCCCE---EEEEecCCcccCCC----cCCCCCCCCcE
Confidence 3344557999999964 2344432 334452 79999987 54
No 50
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=42.46 E-value=2.9 Score=28.59 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=23.4
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
....|..|+-.....+ |...++- +.|+.||.+|+
T Consensus 3 ~~~~C~~C~tt~Tp~W----R~gp~G~---~LCNaCGl~~k 36 (46)
T 1gnf_A 3 EARECVNCGATATPLW----RRDRTGH---YLCNACGLYHK 36 (46)
T ss_dssp CSCCCTTTCCCCCSSC----BCCTTCC---CBCSHHHHHHH
T ss_pred CCCCCCCcCCCCCCcC----ccCCCCC---ccchHHHHHHH
Confidence 3457999998776433 3444442 68999999886
No 51
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.59 E-value=16 Score=25.16 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=20.6
Q ss_pred cccccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 331 ATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 331 ~~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
.......||+||..-. +... -.-+.|..||..+
T Consensus 15 v~~~~k~CP~CG~~~f-m~~~---------~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 15 VIRKNKFCPRCGPGVF-MADH---------GDRWACGKCGYTE 47 (50)
T ss_dssp EECSSEECSSSCSSCE-EEEC---------SSEEECSSSCCEE
T ss_pred EEEecccCCCCCCceE-EecC---------CCeEECCCCCCEE
Confidence 3445567999998532 2211 1257899999863
No 52
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=41.36 E-value=15 Score=36.38 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=26.5
Q ss_pred ccccccccCCcceEEEEEeccCC--CCCCeEEEEcCCCCCccc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSA--DEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsa--DEpmt~f~~C~~C~~~Wk 374 (376)
....||.||+.-. +....+.-+ .|=+-.-+.|.+||++..
T Consensus 219 ~~s~Cp~C~~~~~-t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 219 FNTNCPECNAPAQ-TNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp EEECCTTTCCTTC-EEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred ecccCccCCCccE-EEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 3568999997654 444444432 344556778999999863
No 53
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=41.28 E-value=11 Score=24.09 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=9.9
Q ss_pred eEEEEcCCCCCc
Q 017145 361 TTYVTCVNCSKR 372 (376)
Q Consensus 361 t~f~~C~~C~~~ 372 (376)
..||.|..|||-
T Consensus 4 ~~fY~C~~CGni 15 (36)
T 1dxg_A 4 GDVYKCELCGQV 15 (36)
T ss_dssp TCEEECTTTCCE
T ss_pred ccEEEcCCCCcE
Confidence 469999999984
No 54
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=40.84 E-value=7.5 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.611 Sum_probs=13.8
Q ss_pred ccccccCCcceEEEEEeccCCCC-CCeEEEEcCCCCCc
Q 017145 336 FKCSRCGQRKCTYYQMQTRSADE-PMTTYVTCVNCSKR 372 (376)
Q Consensus 336 ~~C~~C~~~~~~~~q~qtrsaDE-pmt~f~~C~~C~~~ 372 (376)
+.|.+||..-. .+| .+.--+.|..||.|
T Consensus 4 Y~C~rCg~~fs---------~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 4 YRCGKCWKTFT---------DEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp -CCCCTTTTCC---------CCCSCCCSSSCCTTTCCS
T ss_pred EEeeccCCCcc---------HHHHhhCCCcccCccCcE
Confidence 56777765432 111 12333557777765
No 55
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=39.77 E-value=2.7 Score=35.59 Aligned_cols=32 Identities=22% Similarity=0.589 Sum_probs=21.0
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
.-..|+.|+++++.+.- +.-..|..|..||.+
T Consensus 102 ~yVlC~~C~sPdT~l~k-------~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKK-------EKKSWYIVCLACGAQ 133 (139)
T ss_dssp CCSSCCSSSSSCCCSCS-------SCSTTTSSCCC----
T ss_pred HeeECCCCCCcCcEEEE-------eCCeEEEEecCCCCC
Confidence 45689999999986542 234678889999975
No 56
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=37.47 E-value=3.6 Score=27.67 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=21.9
Q ss_pred cccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 337 KCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 337 ~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
.|..|+-.....+. ...++- ..|+.||-+|+
T Consensus 3 ~C~~C~tt~Tp~WR----~gp~G~---~LCNaCGl~~k 33 (43)
T 2vut_I 3 TCTNCFTQTTPLWR----RNPEGQ---PLCNACGLFLK 33 (43)
T ss_dssp CCSSSCCCCCSCCE----ECTTSC---EECHHHHHHHH
T ss_pred cCCccCCCCCCccc----cCCCCC---cccHHHHHHHH
Confidence 58999987765444 333332 68999999886
No 57
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=33.94 E-value=32 Score=24.09 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=22.0
Q ss_pred ccccccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 330 TATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 330 ~~~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
........||+||..-- +... . ..+.|..||...
T Consensus 13 ki~~~~~fCPkCG~~~~--ma~~---~-----dr~~C~kCgyt~ 46 (55)
T 2k4x_A 13 KLVRKHRFCPRCGPGVF--LAEH---A-----DRYSCGRCGYTE 46 (55)
T ss_dssp CCCCSSCCCTTTTTTCC--CEEC---S-----SEEECTTTCCCE
T ss_pred EEEEccccCcCCCCcee--Eecc---C-----CEEECCCCCCEE
Confidence 34455788999998441 1111 1 278899999873
No 58
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=33.74 E-value=23 Score=29.74 Aligned_cols=30 Identities=27% Similarity=0.661 Sum_probs=21.1
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCC
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCS 370 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~ 370 (376)
..+..|..||.....|--+-. -.|+|..|.
T Consensus 34 p~N~~CaDCga~~P~WaS~n~--------GvfiC~~Cs 63 (138)
T 2owa_A 34 PENRTCFDCESRNPTWLSLSF--------AVFICLNCS 63 (138)
T ss_dssp GGGGBCTTTCCBSCCEEETTT--------TEEECHHHH
T ss_pred cCCCcCCCCcCCCCCeEEecC--------CEEEhHhhh
Confidence 356789999999887764421 255688875
No 59
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=32.47 E-value=3.6 Score=30.30 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=24.6
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcccc
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKF 375 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wkf 375 (376)
.....|..|+-.++-.+. ...++- ..|+.||-.|++
T Consensus 7 ~~~~~C~~C~t~~Tp~WR----~gp~G~---~LCNaCGl~~~~ 42 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWR----RNPEGQ---PLCNACGLFLKL 42 (66)
T ss_dssp SSSCCCTTTCCCCCSSCE----EETTTE---EECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCC----cCCCCC---CccHHHHHHHHH
Confidence 346789999987765443 233332 779999998873
No 60
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=31.51 E-value=76 Score=23.91 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHHhhhhccChhhhhhhhcccChHHHHHHHHHHHHHHhCCCchhhhHHHHHHHhhcc
Q 017145 206 DSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIR 274 (376)
Q Consensus 206 d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~lA~~IE~alf~~~~~~~~~Yk~k~Rsl~~NLk 274 (376)
..+|++++..|-+++...-.... .=|.++|+++|..-. +..+|-.-+=-|+..++
T Consensus 12 ~~FRq~vi~~i~~a~~~~G~~~~-------------k~a~emEnhvF~Ka~-tkdEYL~lvarli~h~r 66 (77)
T 2gut_A 12 TAFRQKLVSQIEDAMRKAGVAHS-------------KSSKDMESHVFLKAK-TRDEYLSLVARLIIHFR 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCS-------------SCHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhCCCCC-------------CCHHHHHHHHHhccC-cccchHHHHHHHHHHHH
Confidence 68999999999999986321111 346789999998664 34677655444444443
No 61
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=30.86 E-value=14 Score=27.61 Aligned_cols=31 Identities=29% Similarity=0.659 Sum_probs=22.1
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
...+.||.||+..+ -| ..+-...|..|+..|
T Consensus 24 ~~ky~C~fCgk~~v------kR----~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 24 HARYDCSFCGKKTV------KR----GAAGIWTCSCCKKTV 54 (72)
T ss_dssp HSCBCCSSCCSSCB------SB----CSSSCBCCSSSCCCC
T ss_pred ccCccCCCCCCcee------Ee----cCCCeEECCCCCCEE
Confidence 35678999998764 12 225678899998875
No 62
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=30.65 E-value=5.4 Score=29.09 Aligned_cols=35 Identities=20% Similarity=0.463 Sum_probs=24.3
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
.....|..|+-..+..+ |.+.++- +.|+.||-+|+
T Consensus 5 ~~~~~C~~C~tt~Tp~W----R~gp~G~---~LCNACGl~~~ 39 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLW----RRNANGD---PVCNACGLYYK 39 (63)
T ss_dssp CTTCCCTTTCCSCCSSC----CCCTTSC---CCCHHHHHHHH
T ss_pred CCCCcCCCcCCCCCCcc----CCCCCCC---chhhHHHHHHH
Confidence 34567999998876433 3444443 58999998886
No 63
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=30.38 E-value=25 Score=25.86 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=20.1
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
..+.||.|++.=. |. . .....+|..||..|
T Consensus 7 eiL~CP~ck~~L~-~~------~---~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGPLK-LS------A---DKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCCCE-EC------T---TSSEEEETTTTEEE
T ss_pred hheeCCCCCCcCe-Ee------C---CCCEEEcCCCCcEe
Confidence 4578999997533 21 1 13467899999765
No 64
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.91 E-value=8.1 Score=26.98 Aligned_cols=25 Identities=24% Similarity=0.658 Sum_probs=15.0
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
....|++|+.+.. +....|-.||+.
T Consensus 13 ~k~iCpkC~a~~~--------------~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNP--------------WGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEEC--------------TTCSSCSSSSSC
T ss_pred CCccCCCCCCcCC--------------CCceecCCCCCc
Confidence 3456888877622 334557777765
No 65
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=28.28 E-value=38 Score=32.57 Aligned_cols=42 Identities=21% Similarity=0.440 Sum_probs=25.9
Q ss_pred ccccccccCCcc--eEEE-EEeccCCCC-----CCeEEEEcCCCCCcccc
Q 017145 334 DQFKCSRCGQRK--CTYY-QMQTRSADE-----PMTTYVTCVNCSKRWKF 375 (376)
Q Consensus 334 ~~~~C~~C~~~~--~~~~-q~qtrsaDE-----pmt~f~~C~~C~~~Wkf 375 (376)
+..+|+.||+.. +.+. -.....++| .-+-.|.|..||+.=+|
T Consensus 118 n~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rF 167 (335)
T 1x3z_A 118 NKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRF 167 (335)
T ss_dssp SSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEE
T ss_pred CCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCccccc
Confidence 567899999875 3442 222223333 12456789999996554
No 66
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=28.28 E-value=37 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.578 Sum_probs=17.9
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
..+.|+.||.- |. +|++.. .|..||+.
T Consensus 154 ~~~~C~~CG~~---~~------g~~~p~---~CP~C~~~ 180 (191)
T 1lko_A 154 TKWRCRNCGYV---HE------GTGAPE---LCPACAHP 180 (191)
T ss_dssp EEEEETTTCCE---EE------EEECCS---BCTTTCCB
T ss_pred ceEEECCCCCE---ee------CCCCCC---CCCCCcCC
Confidence 37899999965 22 222212 89999985
No 67
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=28.07 E-value=1.2e+02 Score=23.04 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=39.2
Q ss_pred CchhHHHHHHHHHHHHhhhhccChhhhhhhhcccChHHHHHHHHHHHHHHhCCCchhhhHHHHHHHhhc
Q 017145 205 NDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNI 273 (376)
Q Consensus 205 ~d~vR~k~r~~L~~aL~~~~~~~~~~~~~~~~~~~~~~lA~~IE~alf~~~~~~~~~Yk~k~Rsl~~NL 273 (376)
...+|+..++-|..++..... +....+ ....+....|..||..+|+.... ...|=.-+...++++
T Consensus 11 t~~lR~hlv~Klv~aI~P~pd--p~a~~d-~rm~~l~~yArkvE~~~ye~A~s-rdeYY~llA~kiyki 75 (81)
T 1kdx_A 11 TQDLRSHLVHKLVQAIFPTPD--PAALKD-RRMENLVAYAKKVEGDMYESANS-RDEYYHLLAEKIYKI 75 (81)
T ss_dssp CHHHHHHHHHHHHHHHSCCSS--GGGGGS-HHHHHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCC--hhhhhh-HHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHH
Confidence 378999999999999886432 111100 00112346799999999986653 445544444444444
No 68
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.90 E-value=22 Score=26.24 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=20.4
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
..+.||.|++.=. |.. + ....+|..||..|-
T Consensus 7 ~iL~CP~ck~~L~-~~~------~---~~~LiC~~cg~~YP 37 (70)
T 2js4_A 7 DILVCPVCKGRLE-FQR------A---QAELVCNADRLAFP 37 (70)
T ss_dssp CCCBCTTTCCBEE-EET------T---TTEEEETTTTEEEE
T ss_pred hheECCCCCCcCE-EeC------C---CCEEEcCCCCceec
Confidence 4578999999532 211 1 34678999997663
No 69
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=27.38 E-value=31 Score=35.42 Aligned_cols=15 Identities=20% Similarity=0.826 Sum_probs=10.0
Q ss_pred CCeEEEEcCCCCCccc
Q 017145 359 PMTTYVTCVNCSKRWK 374 (376)
Q Consensus 359 pmt~f~~C~~C~~~Wk 374 (376)
...-...|. ||++|=
T Consensus 637 ~~~~~~~c~-~~~~~g 651 (699)
T 4gl2_A 637 QINGEIICK-CGQAWG 651 (699)
T ss_dssp ---CEEECS-SSCEEE
T ss_pred ccCCcEEee-cCchhh
Confidence 345677798 999993
No 70
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=26.70 E-value=24 Score=26.70 Aligned_cols=9 Identities=33% Similarity=1.102 Sum_probs=5.6
Q ss_pred ccc-ccccCC
Q 017145 335 QFK-CSRCGQ 343 (376)
Q Consensus 335 ~~~-C~~C~~ 343 (376)
.+. ||.|+.
T Consensus 24 ~~~wCP~C~~ 33 (86)
T 2ct7_A 24 KFLWCAQCSF 33 (86)
T ss_dssp CEECCSSSCC
T ss_pred CEeECcCCCc
Confidence 444 997654
No 71
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=25.27 E-value=1.1e+02 Score=26.21 Aligned_cols=26 Identities=23% Similarity=0.661 Sum_probs=18.2
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
..+.|+.||.-.- .+-|- .|..||+.
T Consensus 137 ~~~~C~~CG~i~~---------~~~p~----~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAV---------DEAPE----YCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEE---------SCCCS----BCTTTCCB
T ss_pred CeeEeCCCCCeeC---------CCCCC----CCCCCCCC
Confidence 4678999997432 13333 89999985
No 72
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.01 E-value=25 Score=18.89 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=6.3
Q ss_pred EEcCCCCCcc
Q 017145 364 VTCVNCSKRW 373 (376)
Q Consensus 364 ~~C~~C~~~W 373 (376)
|.|..||..+
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 5677776654
No 73
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=24.88 E-value=7.4 Score=26.90 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=21.2
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
..|.|+.||..=.....++..-..+ .-|.|..||..+.
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~---k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMT---GTFRCTFCHTEVE 50 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTT---TEEBCSSSCCBCE
T ss_pred CCccCCCCCchhccHHHhHhhcCCC---CCEECCCCCCccc
Confidence 3689999997322211112111112 3589999998754
No 74
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.84 E-value=26 Score=25.76 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=20.3
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCccc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~Wk 374 (376)
..+.||.|++.=. |.. .....+|..||..|-
T Consensus 7 ~iL~CP~ck~~L~-~~~---------~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 7 DILVCPVTKGRLE-YHQ---------DKQELWSRQAKLAYP 37 (68)
T ss_dssp CCCBCSSSCCBCE-EET---------TTTEEEETTTTEEEE
T ss_pred hheECCCCCCcCe-EeC---------CCCEEEcCCCCcEec
Confidence 4578999997533 211 124678999997653
No 75
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=24.63 E-value=1.9e+02 Score=26.42 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=19.6
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCC
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCS 370 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~ 370 (376)
....|++||..=....+.+ ..-|.|..|.
T Consensus 233 ~g~pC~~CG~~I~~~~~~g--------R~t~~CP~CQ 261 (262)
T 1k3x_A 233 DGEPCERCGSIIEKTTLSS--------RPFYWCPGCQ 261 (262)
T ss_dssp TTSBCTTTCCBCEEEEETT--------EEEEECTTTC
T ss_pred CcCCCCCCCCEeEEEEECC--------CCeEECCCCC
Confidence 3458999998755444432 4567799996
No 76
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=24.49 E-value=22 Score=23.30 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=9.8
Q ss_pred ccccccccccCCc
Q 017145 332 TTDQFKCSRCGQR 344 (376)
Q Consensus 332 ~t~~~~C~~C~~~ 344 (376)
+.+.+.|++||..
T Consensus 6 ~~~~~~C~~C~~~ 18 (39)
T 2i5o_A 6 AEDQVPCEKCGSL 18 (39)
T ss_dssp CCCEEECTTTCCE
T ss_pred cCCCcccccccCc
Confidence 4567889999875
No 77
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=23.97 E-value=50 Score=27.63 Aligned_cols=30 Identities=37% Similarity=0.704 Sum_probs=20.9
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCC
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCS 370 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~ 370 (376)
..+..|..||.....|--+- . -.|+|..|.
T Consensus 23 p~N~~CaDCg~~~P~WaS~n-------~-GvfiC~~Cs 52 (140)
T 2olm_A 23 PHNRKCFDCDQRGPTYVNMT-------V-GSFVCTSCS 52 (140)
T ss_dssp GGGGSCTTTCSSCCCEEETT-------T-TEEECHHHH
T ss_pred cCCCcCCCCCCCCCCceeec-------c-CEEEchhcc
Confidence 35778999999988776432 1 255688875
No 78
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=23.56 E-value=24 Score=27.79 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=10.0
Q ss_pred CCCCCeEEEEcCCCCCc
Q 017145 356 ADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 356 aDEpmt~f~~C~~C~~~ 372 (376)
-|++ +.|.+|..||..
T Consensus 69 Ld~~-~~YRvCn~CGkP 84 (96)
T 3mhs_E 69 LDKP-IQYRVCEKCGKP 84 (96)
T ss_dssp TSSS-CCCEEETTTCCE
T ss_pred CCCc-ccchhhhccCCc
Confidence 3444 667777777753
No 79
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=23.46 E-value=30 Score=27.29 Aligned_cols=40 Identities=3% Similarity=0.077 Sum_probs=26.0
Q ss_pred ccccccccCCcceEEEEEe-------------cc-----CCCCCCeEEEEcCCCCCccc
Q 017145 334 DQFKCSRCGQRKCTYYQMQ-------------TR-----SADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~q-------------tr-----saDEpmt~f~~C~~C~~~Wk 374 (376)
+...||.|++. -.|...+ .+ .-+|.+....+|..||..|-
T Consensus 7 dILaCP~cK~p-L~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YP 64 (97)
T 2k5r_A 7 HLLCSPDTRQP-LSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFR 64 (97)
T ss_dssp SSCCCCTTSSC-CEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEE
T ss_pred hheECCCCCCc-ccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCcc
Confidence 45689999984 4443321 11 23456678899999998764
No 80
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.06 E-value=30 Score=18.64 Aligned_cols=10 Identities=40% Similarity=1.069 Sum_probs=6.3
Q ss_pred EEcCCCCCcc
Q 017145 364 VTCVNCSKRW 373 (376)
Q Consensus 364 ~~C~~C~~~W 373 (376)
|.|..||..|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 5666776654
No 81
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.04 E-value=37 Score=22.64 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=12.4
Q ss_pred CCCCeEEEEcCCCCCc
Q 017145 357 DEPMTTYVTCVNCSKR 372 (376)
Q Consensus 357 DEpmt~f~~C~~C~~~ 372 (376)
=|+...|.+|..||..
T Consensus 11 le~~~~YRvC~~CgkP 26 (44)
T 2lo3_A 11 LDKPIQYRVCEKCGKP 26 (44)
T ss_dssp CCCCCCEEECTTTCCE
T ss_pred cCccccchhhcccCCc
Confidence 3456789999999974
No 82
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=22.59 E-value=5.9 Score=26.65 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=7.2
Q ss_pred EEcCCCCCcc
Q 017145 364 VTCVNCSKRW 373 (376)
Q Consensus 364 ~~C~~C~~~W 373 (376)
|.|..||..+
T Consensus 31 ~~C~~C~~~f 40 (60)
T 2adr_A 31 YPCGLCNRAF 40 (60)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCCcc
Confidence 6777777665
No 83
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=22.56 E-value=45 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.613 Sum_probs=21.5
Q ss_pred cccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCC
Q 017145 333 TDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCS 370 (376)
Q Consensus 333 t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~ 370 (376)
..+..|..||.....|--+-. -.|+|..|.
T Consensus 35 p~N~~CaDCga~~P~WaS~n~--------GvfiC~~Cs 64 (144)
T 2p57_A 35 PTNKACFDCGAKNPSWASITY--------GVFLCIDCS 64 (144)
T ss_dssp GGGGBCTTTCCBSCCEEEGGG--------TEEECHHHH
T ss_pred CCCCcCCCCcCCCCCeEEecc--------CEEEhhhch
Confidence 367789999999887765432 255688885
No 84
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=22.20 E-value=58 Score=30.06 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=20.9
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCc
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKR 372 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~ 372 (376)
...|++||..=....+.+ ...|.|..|..+
T Consensus 242 G~pC~~CG~~I~~~~~~g--------R~t~~CP~CQ~~ 271 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAG--------RGTHFCPVCQQK 271 (271)
T ss_dssp TSBCTTTCCBCEEEEETT--------EEEEECTTTSCC
T ss_pred CCCCCCCCCEeeEEEECC--------CceEECCCCCCC
Confidence 468999998755444432 556779999753
No 85
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=21.95 E-value=26 Score=29.71 Aligned_cols=16 Identities=25% Similarity=0.746 Sum_probs=13.0
Q ss_pred CCeEEEEcCCCCCccc
Q 017145 359 PMTTYVTCVNCSKRWK 374 (376)
Q Consensus 359 pmt~f~~C~~C~~~Wk 374 (376)
.+.-...|.+||+.|=
T Consensus 65 ~~~g~I~C~~Cgq~WG 80 (145)
T 3eqt_A 65 KPGGVISCRNCGEVWG 80 (145)
T ss_dssp EEEEEEEETTTCCEEE
T ss_pred cCCcEEEchhhChhhH
Confidence 4567788999999994
No 86
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.60 E-value=30 Score=25.41 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=19.9
Q ss_pred ccccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCCcc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRW 373 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~~W 373 (376)
..+.||.|++.=. |.. .....+|..||..|
T Consensus 7 ~iL~CP~ck~~L~-~~~---------~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 7 EILVCPLCKGPLV-FDK---------SKDELICKGDRLAF 36 (68)
T ss_dssp EECBCTTTCCBCE-EET---------TTTEEEETTTTEEE
T ss_pred hheECCCCCCcCe-EeC---------CCCEEEcCCCCcEe
Confidence 4568999997533 211 13467899999765
No 87
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=21.59 E-value=26 Score=27.10 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=9.5
Q ss_pred EEEEcCCCCCccc
Q 017145 362 TYVTCVNCSKRWK 374 (376)
Q Consensus 362 ~f~~C~~C~~~Wk 374 (376)
-+++|+.||..++
T Consensus 20 d~iiClecGK~fK 32 (87)
T 2jsp_A 20 DHIVCLECGGSFK 32 (87)
T ss_dssp SCEECTBTCCEES
T ss_pred CceEecccchhhH
Confidence 4677888887765
No 88
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=21.17 E-value=55 Score=27.33 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCChhhhccCChhhcCcHHHHHHHHHHHHHHHHHhhhc--CCCcc-ccccccccccCCcceEEEEEeccCCCCCCeEEEE
Q 017145 289 EVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRG--GEATA-TTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVT 365 (376)
Q Consensus 289 ~i~p~~l~~Ms~eEmas~e~k~~~~~~~ee~l~~~~~~--~~~~~-~t~~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~ 365 (376)
+|+++.|-+|+++|+ ++.|..-+.++.+--+...+. ..... -...+.|--||..-+...-. .++ .-+-.+.
T Consensus 4 ~ltL~vL~tMsa~El--Ed~R~~G~d~RR~LthAVmr~L~~P~gW~~naEy~~EFgGffPVq~Rfs---P~~-~~f~l~v 77 (144)
T 3nct_A 4 ELTLNVLQTMNAQEY--EDIRAAGSDERRELTHAVMRELDAPDNWTMNGEYGSEFGGFFPVQVRFT---PAH-ERFHLAL 77 (144)
T ss_dssp ---CHHHHHCCHHHH--HHHHHHCHHHHHHHHHHHHHTCCCCTTEEEEECSSSTTCSCSSSEEEEE---ETT-CSEEEEE
T ss_pred eecHHHHhccCHHHH--HHHHHHhHHHHHHHHHHHHhccCCCccceEeccccccccceeeEEEEEc---CCC-CceEEEE
Confidence 678999999999887 334443333333322332221 11111 22356777777766643332 233 4455566
Q ss_pred cC
Q 017145 366 CV 367 (376)
Q Consensus 366 C~ 367 (376)
|.
T Consensus 78 CS 79 (144)
T 3nct_A 78 CS 79 (144)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 89
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=21.09 E-value=9.6 Score=28.42 Aligned_cols=33 Identities=24% Similarity=0.626 Sum_probs=22.9
Q ss_pred ccccccccCCcceEEEEEeccC--CCCCCeEEEEcCCCCCccc
Q 017145 334 DQFKCSRCGQRKCTYYQMQTRS--ADEPMTTYVTCVNCSKRWK 374 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~~q~qtrs--aDEpmt~f~~C~~C~~~Wk 374 (376)
....|..|+-.++..+ |. .+++ ..|+.||-+|+
T Consensus 7 ~~~~C~nC~tt~Tp~W----Rrg~~~~g----~LCNACGl~~~ 41 (71)
T 2kae_A 7 KSFQCSNCSVTETIRW----RNIRSKEG----IQCNACFIYQR 41 (71)
T ss_dssp -CCCCSSSCCSCCSSC----CCCSSSSC----CCSSHHHHHHH
T ss_pred CCCcCCccCCCCCCcc----ccCCCCCC----ccchHHHHHHH
Confidence 4568999998876433 33 3334 68999998886
No 90
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=20.95 E-value=49 Score=27.49 Aligned_cols=15 Identities=20% Similarity=0.682 Sum_probs=11.9
Q ss_pred ccccccccCCcceEE
Q 017145 334 DQFKCSRCGQRKCTY 348 (376)
Q Consensus 334 ~~~~C~~C~~~~~~~ 348 (376)
..+.||.||+.....
T Consensus 106 ~~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 106 AFLACPKCGSHDFEV 120 (139)
T ss_dssp GGCSCSSSSCCCEEE
T ss_pred cCCcCccccCCccEE
Confidence 367899999998754
No 91
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.51 E-value=94 Score=24.01 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=21.0
Q ss_pred cccccccCCcceEEEEEeccCCCCCCeEEEEcCCCCC
Q 017145 335 QFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSK 371 (376)
Q Consensus 335 ~~~C~~C~~~~~~~~q~qtrsaDEpmt~f~~C~~C~~ 371 (376)
...|+.|+.......+ | -+|....+|..|+-
T Consensus 45 ~~~C~~C~G~G~~~~~-~-----G~~~~~~~C~~C~G 75 (104)
T 2ctt_A 45 VQHCHYCGGSGMETIN-T-----GPFVMRSTCRRCGG 75 (104)
T ss_dssp CEECSSSSSSCEEEEE-E-----TTEEEEEECSSSSS
T ss_pred CccCCCCCCCEEEEEE-e-----CCEEEEEECCcCCC
Confidence 4689999988765433 3 24666677888763
No 92
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.37 E-value=35 Score=18.35 Aligned_cols=10 Identities=40% Similarity=1.155 Sum_probs=6.1
Q ss_pred EEcCCCCCcc
Q 017145 364 VTCVNCSKRW 373 (376)
Q Consensus 364 ~~C~~C~~~W 373 (376)
|.|..||..+
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 5566676654
No 93
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.31 E-value=29 Score=18.82 Aligned_cols=10 Identities=20% Similarity=0.477 Sum_probs=6.0
Q ss_pred EEcCCCCCcc
Q 017145 364 VTCVNCSKRW 373 (376)
Q Consensus 364 ~~C~~C~~~W 373 (376)
|.|..||..|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 5566666554
No 94
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=20.27 E-value=5.3 Score=26.50 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=7.0
Q ss_pred EEcCCCCCcc
Q 017145 364 VTCVNCSKRW 373 (376)
Q Consensus 364 ~~C~~C~~~W 373 (376)
|.|..||..+
T Consensus 30 ~~C~~C~~~f 39 (57)
T 1bbo_A 30 YHCTYCNFSF 39 (57)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 6777777654
No 95
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.12 E-value=37 Score=18.27 Aligned_cols=10 Identities=20% Similarity=0.803 Sum_probs=6.4
Q ss_pred EEcCCCCCcc
Q 017145 364 VTCVNCSKRW 373 (376)
Q Consensus 364 ~~C~~C~~~W 373 (376)
|.|..||..+
T Consensus 4 ~~C~~C~~~f 13 (30)
T 2m0d_A 4 YQCDYCGRSF 13 (30)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCccc
Confidence 5677777654
Done!