Citrus Sinensis ID: 017145

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MEQELVELFDAAKKAADSAAIDGVSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAVKVEKIIEEEKQAPSVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC
cHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHcHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHcHHcccccccHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccCEEEEEEEEcccccccccEEEccccccccccc
*EQELVELFDAAK*****************VSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIVIE*****************************************************************************************************QGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEK*LFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC
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MEQELVELFDAAKKAADSAAIDGVSSGGPEVSRCVDALKRLKSFPVTYDVLVSTQVGKRLRPLTKHPREKIQIVASNLLDIWKKIVIEETTRNKKNGSTGDKSSVTTGVVKPDSGKIDKVQKTSAVKVEKVSTAETVKVEKTGSVSRSETVQVEKKETNGDSVMDRGEAVKVEKIIEEEKQAPSVRKPSQGTIATPKLTQLIKCNDSSRDKIRELLANALSKVTSEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVTPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCSRCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Transcription elongation factor A protein 3 Necessary for efficient RNA polymerase II transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by S-II allows the resumption of elongation from the new 3'-terminus.probableP23881

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1PQV, chain S
Confidence level:very confident
Coverage over the Query: 198-376
View the alignment between query and template
View the model in PyMOL