BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017146
         (376 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)

Query: 152 KRHRGRPPGSGKKQLDALGGVGGV--GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILS 209
           KR RGRPPGS  K    +            HV+ V  G DI   +  ++++  R V +L 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLG 145

Query: 210 ASGAICNVTLRQPTM---------SGGTVTYEGRFEIISLSGSFLLSDNNGNRSRSGGLS 260
            +G + NVTLRQP            GG VT  GRFEI+SL+G+ L          +GGLS
Sbjct: 146 GNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAP---PGAGGLS 202

Query: 261 VSLAGSDGRVLGGLVAGMLMAASPVQVIVGSF 292
           + LAG  G+V+GG V   L+A++PV ++  SF
Sbjct: 203 IFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234


>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3
          Length = 3230

 Score = 32.0 bits (71), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 18/97 (18%)

Query: 86   GSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPG------SLADSGGG- 138
            GSPS+R+  G  S  P     G P +  P  +    L T  Q P        L  +GGG 
Sbjct: 2789 GSPSVRSMSGPESSPPI----GGPCEAAPSSS----LPTPPQQPFIARRHIELGVTGGGS 2840

Query: 139  ---GGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGV 172
               G GA  + + P+ KR RGRPP   +   DA  GV
Sbjct: 2841 PENGDGALLAITPPAVKRRRGRPPKKNRSPADAGRGV 2877


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.128    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,465,477
Number of Sequences: 539616
Number of extensions: 6981072
Number of successful extensions: 39450
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 426
Number of HSP's that attempted gapping in prelim test: 36290
Number of HSP's gapped (non-prelim): 2766
length of query: 376
length of database: 191,569,459
effective HSP length: 119
effective length of query: 257
effective length of database: 127,355,155
effective search space: 32730274835
effective search space used: 32730274835
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)