Query 017146
Match_columns 376
No_of_seqs 242 out of 590
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 06:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 100.0 5.3E-28 1.1E-32 205.7 10.8 116 177-297 1-118 (120)
2 COG1661 Predicted DNA-binding 99.9 1.2E-23 2.5E-28 186.1 14.4 115 176-297 8-125 (141)
3 PF02178 AT_hook: AT hook moti 96.1 0.0019 4.1E-08 36.6 0.6 12 103-114 1-12 (13)
4 smart00384 AT_hook DNA binding 96.1 0.0029 6.3E-08 42.0 1.3 15 103-117 1-15 (26)
5 PF14621 RFX5_DNA_bdg: RFX5 DN 83.8 0.39 8.4E-06 45.4 0.4 13 101-113 66-78 (219)
6 PF13546 DDE_5: DDE superfamil 68.9 2.6 5.6E-05 40.0 1.5 15 101-115 229-243 (273)
7 COG1710 Uncharacterized protei 66.1 2.6 5.7E-05 37.7 0.8 14 101-114 82-96 (139)
8 PF03306 AAL_decarboxy: Alpha- 48.4 79 0.0017 30.4 7.6 106 182-293 84-200 (220)
9 COG1777 Predicted transcriptio 44.8 9.1 0.0002 37.1 0.7 25 102-126 63-88 (217)
10 TIGR01252 acetolac_decarb alph 33.6 1.6E+02 0.0034 28.8 7.2 88 202-294 105-203 (232)
11 KOG4565 E93 protein involved i 33.2 14 0.00031 35.0 -0.0 13 102-114 112-124 (206)
12 PF13737 DDE_Tnp_1_5: Transpos 28.5 29 0.00063 30.3 1.1 21 100-121 21-41 (112)
13 PF14869 DUF4488: Domain of un 24.1 92 0.002 28.3 3.5 35 204-240 28-62 (133)
14 PF02196 RBD: Raf-like Ras-bin 24.0 2.8E+02 0.0062 21.8 5.9 42 178-221 11-54 (71)
15 COG3527 AlsD Alpha-acetolactat 20.9 96 0.0021 30.6 3.2 100 186-289 92-202 (234)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.95 E-value=5.3e-28 Score=205.75 Aligned_cols=116 Identities=29% Similarity=0.377 Sum_probs=101.4
Q ss_pred ceeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCC--CCCeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTM--SGGTVTYEGRFEIISLSGSFLLSDNNGNRS 254 (376)
Q Consensus 177 ftphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~--s~~tvt~eG~FEILSLSGnis~~d~~~~~~ 254 (376)
||+|++||++||||+++|++||++..+.+|+|+|+|+|++|+|++++. .+..++|+|+|||+||+|||...+++
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~---- 76 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDGK---- 76 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETTE----
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCCC----
Confidence 689999999999999999999999999999999999999999999953 45688999999999999999985554
Q ss_pred CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcccccc
Q 017146 255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGK 297 (376)
Q Consensus 255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~ 297 (376)
++.||||+|+|.||+|+||||..+.+ ..++||+|..+.....
T Consensus 77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~ 118 (120)
T PF03479_consen 77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINF 118 (120)
T ss_dssp EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEE
T ss_pred CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccc
Confidence 58999999999999999999996666 5578999988876544
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=186.13 Aligned_cols=115 Identities=23% Similarity=0.281 Sum_probs=106.6
Q ss_pred CceeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCC---CCeeEeecceEEEEeeeeeecCCCCCC
Q 017146 176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMS---GGTVTYEGRFEIISLSGSFLLSDNNGN 252 (376)
Q Consensus 176 ~ftphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s---~~tvt~eG~FEILSLSGnis~~d~~~~ 252 (376)
.-+.+++||++|||+++.|.+||+++.+.+++++|+|++++++|++++.+ +.+++++|+||||||.|||..++
T Consensus 8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---- 83 (141)
T COG1661 8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---- 83 (141)
T ss_pred cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC----
Confidence 44789999999999999999999999999999999999999999999965 45899999999999999999987
Q ss_pred CCCCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcccccc
Q 017146 253 RSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGK 297 (376)
Q Consensus 253 ~~~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~ 297 (376)
++.|||++|++++|+++||||.++.+.. ++||+|.++.....
T Consensus 84 --p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~ 125 (141)
T COG1661 84 --PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELF 125 (141)
T ss_pred --CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccce
Confidence 4799999999999999999999998876 99999999988743
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=96.14 E-value=0.0019 Score=36.65 Aligned_cols=12 Identities=67% Similarity=1.088 Sum_probs=4.6
Q ss_pred cccCCCCCCCCC
Q 017146 103 KKKRGRPRKYTP 114 (376)
Q Consensus 103 KkKRGRPRKY~p 114 (376)
+||||||+|+..
T Consensus 1 ~r~RGRP~k~~~ 12 (13)
T PF02178_consen 1 KRKRGRPRKNAK 12 (13)
T ss_dssp S--SS--TT---
T ss_pred CCcCCCCccccC
Confidence 689999999864
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=96.09 E-value=0.0029 Score=42.03 Aligned_cols=15 Identities=60% Similarity=0.922 Sum_probs=12.9
Q ss_pred cccCCCCCCCCCCCc
Q 017146 103 KKKRGRPRKYTPDGN 117 (376)
Q Consensus 103 KkKRGRPRKY~pdg~ 117 (376)
|||||||||+..+..
T Consensus 1 kRkRGRPrK~~~~~~ 15 (26)
T smart00384 1 KRKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCCccc
Confidence 699999999987764
No 5
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=83.75 E-value=0.39 Score=45.43 Aligned_cols=13 Identities=69% Similarity=1.068 Sum_probs=10.7
Q ss_pred cCcccCCCCCCCC
Q 017146 101 PAKKKRGRPRKYT 113 (376)
Q Consensus 101 ~~KkKRGRPRKY~ 113 (376)
.+|||||||||-.
T Consensus 66 dAKRKRGRPRKKs 78 (219)
T PF14621_consen 66 DAKRKRGRPRKKS 78 (219)
T ss_pred hhhhhcCCCccCC
Confidence 4699999999763
No 6
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=68.90 E-value=2.6 Score=39.99 Aligned_cols=15 Identities=60% Similarity=1.041 Sum_probs=11.5
Q ss_pred cCcccCCCCCCCCCC
Q 017146 101 PAKKKRGRPRKYTPD 115 (376)
Q Consensus 101 ~~KkKRGRPRKY~pd 115 (376)
+..+||||||||+.-
T Consensus 229 ~~~~~rGRPr~~g~~ 243 (273)
T PF13546_consen 229 PPPPKRGRPRKYGRR 243 (273)
T ss_pred ccCCCCCCCCCCCCc
Confidence 445669999999954
No 7
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.13 E-value=2.6 Score=37.74 Aligned_cols=14 Identities=71% Similarity=1.222 Sum_probs=11.9
Q ss_pred cCc-ccCCCCCCCCC
Q 017146 101 PAK-KKRGRPRKYTP 114 (376)
Q Consensus 101 ~~K-kKRGRPRKY~p 114 (376)
|.| |-|||||||.-
T Consensus 82 Pvk~KgrGrprkyd~ 96 (139)
T COG1710 82 PVKLKGRGRPRKYDR 96 (139)
T ss_pred eeeecCCCCCcccch
Confidence 567 88999999985
No 8
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=48.36 E-value=79 Score=30.45 Aligned_cols=106 Identities=14% Similarity=0.217 Sum_probs=55.7
Q ss_pred EEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCCC-------eeEeecceEEEEeeeeee----cCCCC
Q 017146 182 ITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG-------TVTYEGRFEIISLSGSFL----LSDNN 250 (376)
Q Consensus 182 IrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~~-------tvt~eG~FEILSLSGnis----~~d~~ 250 (376)
...-.-++|-+.|.+.... ......+-.-|..+.|++|-.....+ .+.-+-.||.=.+.|++. +.--.
T Consensus 84 ~~~~~~~~l~~~l~~~~~~-~N~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~~ 162 (220)
T PF03306_consen 84 DSPMSKEELEAKLDELLPS-KNLFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYMG 162 (220)
T ss_dssp EEEEEHHHHHHHHHHHSS--TTS-EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGGB
T ss_pred CCCCCHHHHHHHHHHhcCC-CceEEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhcc
Confidence 3444566777777777553 34477778899999999998543221 111123466666667664 33222
Q ss_pred CCCCCCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcc
Q 017146 251 GNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFI 293 (376)
Q Consensus 251 ~~~~~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~ 293 (376)
+.. ..++|+-+-+. -|-+||||.+-.+-. ++|-+..+.
T Consensus 163 gi~--v~G~HlHFls~-Dr~~GGHvld~~~~~--~~v~~~~~~ 200 (220)
T PF03306_consen 163 GIN--VPGFHLHFLSD-DRTFGGHVLDFELDN--GTVEIDVFD 200 (220)
T ss_dssp TTB---CEEEEEEEET-TSS-EEEEEEEEEEE--EEEEEEE-S
T ss_pred ccC--CceEEEEEecC-CCCCCCCeEEEEece--EEEEEEecC
Confidence 221 23455544443 377999999876644 455555444
No 9
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=44.79 E-value=9.1 Score=37.06 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=17.5
Q ss_pred CcccCCCCCCCC-CCCcccccccCCC
Q 017146 102 AKKKRGRPRKYT-PDGNIALRLATTA 126 (376)
Q Consensus 102 ~KkKRGRPRKY~-pdg~~~l~l~p~~ 126 (376)
.|.+|||||||. .-+++.|-+.-+|
T Consensus 63 e~~~Rg~~rKYY~Is~~~rleV~lsp 88 (217)
T COG1777 63 EKIPRGRPRKYYMISRNLRLEVTLSP 88 (217)
T ss_pred cccccCCCcceeeccCCeEEEEEecC
Confidence 477889999996 6677666554333
No 10
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=33.62 E-value=1.6e+02 Score=28.75 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=52.8
Q ss_pred CceEEEEeeeceeeeEEEeCCCCCC---C----eeEeecceEEEEeeeeee----cCCCCCCCCCCCeEEEEEeCCCCcE
Q 017146 202 PRTVCILSASGAICNVTLRQPTMSG---G----TVTYEGRFEIISLSGSFL----LSDNNGNRSRSGGLSVSLAGSDGRV 270 (376)
Q Consensus 202 ~~aicILSAiGAVSnVTLrq~~~s~---~----tvt~eG~FEILSLSGnis----~~d~~~~~~~~~HLHVSLAd~dGqV 270 (376)
....+-+-.-|..++|+.|---... . .+.=.-.||+-.+.|++. +.--.+.. -.++|+-+-+.| |-
T Consensus 105 ~N~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi~--v~G~HlHFisdD-r~ 181 (232)
T TIGR01252 105 KNVFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGIN--VAGYHLHFISED-RT 181 (232)
T ss_pred CccEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhccccC--CceEEEEEecCC-CC
Confidence 4568888999999999999844211 1 111133488888777775 32212221 345555555544 67
Q ss_pred EeeeecCceeeeccEEEEEEEccc
Q 017146 271 LGGLVAGMLMAASPVQVIVGSFIA 294 (376)
Q Consensus 271 ~GGHL~G~lIAAstVEVVI~sF~~ 294 (376)
+||||.+..+.. +.|-|..+..
T Consensus 182 ~GGHVld~~~~~--~~~~i~~~~~ 203 (232)
T TIGR01252 182 FGGHVLDYIIDN--GTLEIGQIQE 203 (232)
T ss_pred CCcceeEEEeee--eEEEEeeccc
Confidence 899999876644 4454444443
No 11
>KOG4565 consensus E93 protein involved in programmed cell death, putative transcription regulator [Transcription]
Probab=33.15 E-value=14 Score=35.04 Aligned_cols=13 Identities=54% Similarity=0.915 Sum_probs=11.4
Q ss_pred CcccCCCCCCCCC
Q 017146 102 AKKKRGRPRKYTP 114 (376)
Q Consensus 102 ~KkKRGRPRKY~p 114 (376)
-+|||||=|+|.-
T Consensus 112 pRkKRGrYRqYd~ 124 (206)
T KOG4565|consen 112 PRKKRGRYRQYDK 124 (206)
T ss_pred ccccccchhhhhH
Confidence 3899999999974
No 12
>PF13737 DDE_Tnp_1_5: Transposase DDE domain
Probab=28.54 E-value=29 Score=30.25 Aligned_cols=21 Identities=43% Similarity=0.830 Sum_probs=15.2
Q ss_pred CcCcccCCCCCCCCCCCccccc
Q 017146 100 DPAKKKRGRPRKYTPDGNIALR 121 (376)
Q Consensus 100 ~~~KkKRGRPRKY~pdg~~~l~ 121 (376)
++...|||||++|. |-.|...
T Consensus 21 ~~~~~kRGr~~~yS-D~aI~~~ 41 (112)
T PF13737_consen 21 APPRGKRGRPPRYS-DAAIQTC 41 (112)
T ss_pred cCCCCCCCCCcccc-hHHHHHH
Confidence 34578999999997 6554433
No 13
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=24.12 E-value=92 Score=28.27 Aligned_cols=35 Identities=37% Similarity=0.496 Sum_probs=28.8
Q ss_pred eEEEEeeeceeeeEEEeCCCCCCCeeEeecceEEEEe
Q 017146 204 TVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISL 240 (376)
Q Consensus 204 aicILSAiGAVSnVTLrq~~~s~~tvt~eG~FEILSL 240 (376)
..=|||.-|...|+++ .+. ++..+++.|.||+.|=
T Consensus 28 ~lKilS~Dgtf~Ni~~-~~~-~~aiIt~~GtY~~~sD 62 (133)
T PF14869_consen 28 VLKILSDDGTFVNITM-IPK-SGAIITGYGTYEQPSD 62 (133)
T ss_pred cEEEEcCCCcEEEEEE-eCC-CCcEEEEeEEEEEcCC
Confidence 4779999999999999 333 3579999999999873
No 14
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=23.96 E-value=2.8e+02 Score=21.84 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=31.7
Q ss_pred eeEEEEecCCCcHHHHHHHHHHhCCc--eEEEEeeeceeeeEEEeC
Q 017146 178 TPHVITVKAGEDISSKIFAFSQQGPR--TVCILSASGAICNVTLRQ 221 (376)
Q Consensus 178 tphVIrV~~GEDIvekI~~Faqq~~~--aicILSAiGAVSnVTLrq 221 (376)
+.-++.+.+|+-|-+.|...|++++. ..|.+.-.| .+-.|-+
T Consensus 11 q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~--~~k~l~~ 54 (71)
T PF02196_consen 11 QRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG--EKKPLDW 54 (71)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE--EEEEE-T
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC--CCccccC
Confidence 57789999999999999999998754 578887777 5555544
No 15
>COG3527 AlsD Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.93 E-value=96 Score=30.58 Aligned_cols=100 Identities=19% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCCC-------eeEeecceEEEEeeeee----ecCCCCCCCC
Q 017146 186 AGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG-------TVTYEGRFEIISLSGSF----LLSDNNGNRS 254 (376)
Q Consensus 186 ~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~~-------tvt~eG~FEILSLSGni----s~~d~~~~~~ 254 (376)
.-||+.+.|..+..-.+ -.+-+...|....|..|..-.... .+.-.=-||.=...|++ .+....+..
T Consensus 92 s~e~~~~~i~~~~~s~N-lF~aiki~G~F~~v~~R~vp~q~~py~p~~e~~~~QPvf~~Env~GtiVGf~tP~~~~Gl~- 169 (234)
T COG3527 92 SSEDVFSGISGTMDSEN-LFYAIKITGIFKYVHVRMVPKQTPPYTPLAEVVKIQPVFEFENVKGTIVGFWTPEYFEGLA- 169 (234)
T ss_pred cHHHHHHHhhcccCCCc-eEEEEEEeccccceEEEEEeccCCCCccHhhhhccCCceEEeecCceEEEecChHHhcccc-
Confidence 45699999988765443 355566777777777776433211 11111124444444444 443322221
Q ss_pred CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEE
Q 017146 255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIV 289 (376)
Q Consensus 255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI 289 (376)
..+.|+-+. .|++.+||||..-.+-.++|||=.
T Consensus 170 -v~GyHlHFi-tDdrtfGGHV~D~~~~~~~veI~~ 202 (234)
T COG3527 170 -VAGYHLHFI-TDDRTFGGHVLDFEIENGEVEIGA 202 (234)
T ss_pred -cCceEEEEe-ecCccccceEEEEEeeeEEEEEee
Confidence 234444444 488999999998877776666543
Done!