Query 017146
Match_columns 376
No_of_seqs 242 out of 590
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:41:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dt4_A Hypothetical protein PH 99.9 7.6E-27 2.6E-31 202.5 11.6 115 178-298 10-127 (143)
2 3htn_A Putative DNA binding pr 99.9 2.1E-26 7.1E-31 201.9 12.6 113 178-295 16-131 (149)
3 2p6y_A Hypothetical protein VC 99.9 9E-26 3.1E-30 196.2 16.2 112 177-297 2-114 (142)
4 2hx0_A Putative DNA-binding pr 99.9 9.2E-26 3.2E-30 198.7 15.4 116 172-296 13-129 (154)
5 2h6l_A Hypothetical protein; N 99.9 3.4E-26 1.2E-30 199.1 10.6 113 178-297 10-125 (146)
6 3hwu_A Putative DNA-binding pr 99.9 5E-24 1.7E-28 186.2 13.4 114 178-296 13-129 (147)
7 2ezd_A High mobility group pro 95.0 0.012 4.1E-07 38.0 2.1 16 149-164 2-18 (26)
8 4dyq_A Gene 1 protein; GP1, oc 69.5 1.4 4.6E-05 37.4 0.9 13 103-115 4-16 (140)
9 1xv2_A ALDC, hypothetical prot 51.8 30 0.001 32.3 6.8 95 188-287 97-202 (237)
10 4i95_A Putative uncharacterize 31.2 39 0.0013 29.7 3.7 34 204-239 37-70 (142)
11 3ipq_A Oxysterols receptor LXR 29.9 11 0.00038 34.9 0.0 14 8-21 4-17 (283)
12 1t3g_A X-linked interleukin-1 26.5 43 0.0015 28.7 3.1 27 184-210 51-77 (159)
No 1
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.94 E-value=7.6e-27 Score=202.51 Aligned_cols=115 Identities=21% Similarity=0.290 Sum_probs=103.4
Q ss_pred eeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCC---CeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEGRFEIISLSGSFLLSDNNGNRS 254 (376)
Q Consensus 178 tphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~---~tvt~eG~FEILSLSGnis~~d~~~~~~ 254 (376)
++|++||++||||+++|.+||+++.+..|+++++|+|++|+||+++... ..++++|+|||+||+|||.+.|++
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~---- 85 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE---- 85 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC----
Confidence 7999999999999999999999988887778999999999999998754 368899999999999999997654
Q ss_pred CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEccccccc
Q 017146 255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGKK 298 (376)
Q Consensus 255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~K 298 (376)
++.||||+|+|.||+|+||||.+++ .+ ++||+|.+|....+.
T Consensus 86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~ 127 (143)
T 2dt4_A 86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIE 127 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCE
T ss_pred ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEE
Confidence 5899999999999999999999887 55 899999999875444
No 2
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.94 E-value=2.1e-26 Score=201.87 Aligned_cols=113 Identities=18% Similarity=0.247 Sum_probs=102.9
Q ss_pred eeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCC---CeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEGRFEIISLSGSFLLSDNNGNRS 254 (376)
Q Consensus 178 tphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~---~tvt~eG~FEILSLSGnis~~d~~~~~~ 254 (376)
+.|++||++||||+++|.+||+++++..|+++++|+|++|+||+++.+. ..++|+|+|||+||+|||++.|++
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~---- 91 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ---- 91 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC----
Confidence 7999999999999999999999999998888999999999999988753 368999999999999999998664
Q ss_pred CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcccc
Q 017146 255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAE 295 (376)
Q Consensus 255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~ 295 (376)
++.||||+|+|.||+|+||||..+ ++..++||+|.++...
T Consensus 92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~~ 131 (149)
T 3htn_A 92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSER 131 (149)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCSC
T ss_pred ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCCe
Confidence 589999999999999999999988 4567999999998763
No 3
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.94 E-value=9e-26 Score=196.23 Aligned_cols=112 Identities=21% Similarity=0.340 Sum_probs=99.8
Q ss_pred ceeEEEEecCCCcHHHHHHHHHHhCCc-eEEEEeeeceeeeEEEeCCCCCCCeeEeecceEEEEeeeeeecCCCCCCCCC
Q 017146 177 FTPHVITVKAGEDISSKIFAFSQQGPR-TVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNNGNRSR 255 (376)
Q Consensus 177 ftphVIrV~~GEDIvekI~~Faqq~~~-aicILSAiGAVSnVTLrq~~~s~~tvt~eG~FEILSLSGnis~~d~~~~~~~ 255 (376)
|++|++||++||||+++|.+||++..+ ++||++++|+|++|+||+++... +++|+|+|||+||+|||.+.
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-------- 72 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-------- 72 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS--------
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC--------
Confidence 789999999999999999999998665 68888999999999999999744 78899999999999999984
Q ss_pred CCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcccccc
Q 017146 256 SGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGK 297 (376)
Q Consensus 256 ~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~ 297 (376)
..||||+|+|.||+|+||||+++++++.++||+|.+|....+
T Consensus 73 ~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~ 114 (142)
T 2p6y_A 73 HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHF 114 (142)
T ss_dssp CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEE
T ss_pred CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeE
Confidence 279999999999999999999766667899999999987433
No 4
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.93 E-value=9.2e-26 Score=198.71 Aligned_cols=116 Identities=24% Similarity=0.404 Sum_probs=103.3
Q ss_pred ccCCCceeEEEEecCCCcHHHHHHHHHHhCC-ceEEEEeeeceeeeEEEeCCCCCCCeeEeecceEEEEeeeeeecCCCC
Q 017146 172 VGGVGFTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIISLSGSFLLSDNN 250 (376)
Q Consensus 172 ~~g~~ftphVIrV~~GEDIvekI~~Faqq~~-~aicILSAiGAVSnVTLrq~~~s~~tvt~eG~FEILSLSGnis~~d~~ 250 (376)
+....+++|++||++||||+++|.+||+++. +++||++++|+|++|+||+++... +++|+|+|||+||+|+|++.
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~--- 88 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT--- 88 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence 4567789999999999999999999998655 478888999999999999999754 78899999999999999985
Q ss_pred CCCCCCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEccccc
Q 017146 251 GNRSRSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEG 296 (376)
Q Consensus 251 ~~~~~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~ 296 (376)
..||||+|+|.||+|+||||++++++..++||+|.+|....
T Consensus 89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~ 129 (154)
T 2hx0_A 89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALT 129 (154)
T ss_dssp -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEE
T ss_pred -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCce
Confidence 27999999999999999999986666689999999998743
No 5
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.93 E-value=3.4e-26 Score=199.06 Aligned_cols=113 Identities=22% Similarity=0.271 Sum_probs=101.8
Q ss_pred eeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCC---CeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEGRFEIISLSGSFLLSDNNGNRS 254 (376)
Q Consensus 178 tphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~---~tvt~eG~FEILSLSGnis~~d~~~~~~ 254 (376)
++|++||++||||+++|.+||+++.+..|+|+++|+|++|+||+++... ..++++|+|||+||+|||++.|++
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~---- 85 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK---- 85 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC----
Confidence 6999999999999999999999887776777999999999999998765 378999999999999999997654
Q ss_pred CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEcccccc
Q 017146 255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEGK 297 (376)
Q Consensus 255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~~ 297 (376)
++.||||+|+ .||+|+||||++++| .++||+|.+|....+
T Consensus 86 p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~ 125 (146)
T 2h6l_A 86 PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAP 125 (146)
T ss_dssp EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCC
T ss_pred ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcE
Confidence 5899999999 999999999998885 599999999988433
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.91 E-value=5e-24 Score=186.18 Aligned_cols=114 Identities=12% Similarity=0.208 Sum_probs=101.1
Q ss_pred eeEEEEecCCCcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCC---CeeEeecceEEEEeeeeeecCCCCCCCC
Q 017146 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEGRFEIISLSGSFLLSDNNGNRS 254 (376)
Q Consensus 178 tphVIrV~~GEDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~---~tvt~eG~FEILSLSGnis~~d~~~~~~ 254 (376)
+.+++||++||||+++|.+||+++.+..++++++|++++|+|++++.+. ...+++ ++||+||+|||+..|++
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~---- 87 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGK---- 87 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCC----
Confidence 5799999999999999999999999999999999999999999998754 256788 89999999999987764
Q ss_pred CCCeEEEEEeCCCCcEEeeeecCceeeeccEEEEEEEccccc
Q 017146 255 RSGGLSVSLAGSDGRVLGGLVAGMLMAASPVQVIVGSFIAEG 296 (376)
Q Consensus 255 ~~~HLHVSLAd~dGqV~GGHL~G~lIAAstVEVVI~sF~~~~ 296 (376)
++.|||++|+|.||+|+||||..+.|...|+||+|..+....
T Consensus 88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~~~ 129 (147)
T 3hwu_A 88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQRL 129 (147)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESSCC
T ss_pred ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCCeE
Confidence 589999999999999999999988665459999999875533
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=94.98 E-value=0.012 Score=38.02 Aligned_cols=16 Identities=63% Similarity=1.051 Sum_probs=12.8
Q ss_pred CCccCCCCCCCCC-CCC
Q 017146 149 PSAKRHRGRPPGS-GKK 164 (376)
Q Consensus 149 ~~~kr~RGRP~GS-~K~ 164 (376)
+..||+||||.|| ||.
T Consensus 2 ptpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNKG 18 (26)
T ss_dssp CSCCCCSSCCTTCCCCS
T ss_pred CCCcCCCCCcCcccccC
Confidence 3469999999999 553
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=69.53 E-value=1.4 Score=37.37 Aligned_cols=13 Identities=46% Similarity=1.022 Sum_probs=6.2
Q ss_pred cccCCCCCCCCCC
Q 017146 103 KKKRGRPRKYTPD 115 (376)
Q Consensus 103 KkKRGRPRKY~pd 115 (376)
|+|+|||.||.++
T Consensus 4 ~~k~GRPtk~t~e 16 (140)
T 4dyq_A 4 EPKAGRPSDYMPE 16 (140)
T ss_dssp ------CCSCCTT
T ss_pred CCCCCCCCCCCHH
Confidence 8999999999875
No 9
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=51.80 E-value=30 Score=32.30 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=53.3
Q ss_pred CcHHHHHHHHHHhCCceEEEEeeeceeeeEEEeCCCCCC---C----eeEeecceEEEEeeeeee----cCCCCCCCCCC
Q 017146 188 EDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---G----TVTYEGRFEIISLSGSFL----LSDNNGNRSRS 256 (376)
Q Consensus 188 EDIvekI~~Faqq~~~aicILSAiGAVSnVTLrq~~~s~---~----tvt~eG~FEILSLSGnis----~~d~~~~~~~~ 256 (376)
+++-+.|.+.. .....|.+-.-|..++|++|--.... . .+.-+-.|++=...|++. +.--.+. -.
T Consensus 97 ~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi--~v 172 (237)
T 1xv2_A 97 DVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGV--GS 172 (237)
T ss_dssp HHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTT--BC
T ss_pred HHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhccc--CC
Confidence 33444444333 44567888999999999999754211 1 111122256666666654 4321221 13
Q ss_pred CeEEEEEeCCCCcEEeeeecCceeeeccEEE
Q 017146 257 GGLSVSLAGSDGRVLGGLVAGMLMAASPVQV 287 (376)
Q Consensus 257 ~HLHVSLAd~dGqV~GGHL~G~lIAAstVEV 287 (376)
.++|+-+-+.| |-+||||.+-.+-..+++|
T Consensus 173 ~G~HlHFisdD-r~~GGHVldf~~~~~~~~~ 202 (237)
T 1xv2_A 173 AGFHIHFADDE-RAYGGHVLDFEVDDVVVEI 202 (237)
T ss_dssp SEEEEEEEETT-SSCEEEEEEEEEEEEEEEE
T ss_pred ceeEEEEEcCC-CCCCcceEEEEecceEEEE
Confidence 45566555544 4489999987665544444
No 10
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=31.20 E-value=39 Score=29.66 Aligned_cols=34 Identities=38% Similarity=0.553 Sum_probs=29.4
Q ss_pred eEEEEeeeceeeeEEEeCCCCCCCeeEeecceEEEE
Q 017146 204 TVCILSASGAICNVTLRQPTMSGGTVTYEGRFEIIS 239 (376)
Q Consensus 204 aicILSAiGAVSnVTLrq~~~s~~tvt~eG~FEILS 239 (376)
..=|||.=|.+.|++++ ++ ++.+++..|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~-~~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIR-PG-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECC-TT-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEe-cC-CCcEEEEeEEEEecC
Confidence 56799999999999998 33 577999999999997
No 11
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=29.92 E-value=11 Score=34.90 Aligned_cols=14 Identities=71% Similarity=0.987 Sum_probs=0.0
Q ss_pred CCCCCCcCcCCCCc
Q 017146 8 PQLHQHQHQHQQPN 21 (376)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (376)
|.||||+||||+|.
T Consensus 4 ~~~~~~~~~~~~~~ 17 (283)
T 3ipq_A 4 QHQHQHQHQHQQPL 17 (283)
T ss_dssp --------------
T ss_pred hhHHHHHHhhhccc
Confidence 34566777666554
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=26.51 E-value=43 Score=28.67 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=24.7
Q ss_pred ecCCCcHHHHHHHHHHhCCceEEEEee
Q 017146 184 VKAGEDISSKIFAFSQQGPRTVCILSA 210 (376)
Q Consensus 184 V~~GEDIvekI~~Faqq~~~aicILSA 210 (376)
+.+|++|++.|.+..++-.+.|+|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 679999999999999998999999985
Done!