Query 017148
Match_columns 376
No_of_seqs 352 out of 2751
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00742 yjbN tRNA dihydrouri 100.0 4.1E-65 8.8E-70 490.1 33.8 318 9-336 1-318 (318)
2 COG0042 tRNA-dihydrouridine sy 100.0 1.5E-63 3.2E-68 480.2 33.0 313 2-331 4-318 (323)
3 PRK11815 tRNA-dihydrouridine s 100.0 3.9E-62 8.5E-67 473.8 34.5 324 6-340 8-332 (333)
4 PRK10415 tRNA-dihydrouridine s 100.0 3.8E-61 8.2E-66 464.7 33.5 314 2-332 3-318 (321)
5 PRK10550 tRNA-dihydrouridine s 100.0 5.1E-61 1.1E-65 460.9 32.4 297 10-327 2-307 (312)
6 PF01207 Dus: Dihydrouridine s 100.0 2.5E-60 5.3E-65 457.1 18.7 301 12-328 1-302 (309)
7 TIGR00737 nifR3_yhdG putative 100.0 3.8E-57 8.2E-62 437.8 33.6 313 2-332 1-316 (319)
8 KOG2335 tRNA-dihydrouridine sy 100.0 1.3E-55 2.7E-60 415.9 25.6 326 12-366 22-356 (358)
9 KOG2333 Uncharacterized conser 100.0 6.4E-46 1.4E-50 357.2 22.5 278 5-300 261-544 (614)
10 cd02801 DUS_like_FMN Dihydrour 100.0 1.3E-43 2.9E-48 327.9 23.9 223 10-247 1-224 (231)
11 cd02911 arch_FMN Archeal FMN-b 100.0 1.8E-39 4E-44 299.9 19.2 209 10-247 1-229 (233)
12 cd04734 OYE_like_3_FMN Old yel 100.0 2.4E-36 5.3E-41 294.6 24.1 243 2-247 7-326 (343)
13 PRK13523 NADPH dehydrogenase N 100.0 3.1E-35 6.7E-40 285.5 22.5 239 2-248 9-317 (337)
14 TIGR01037 pyrD_sub1_fam dihydr 100.0 5.6E-35 1.2E-39 280.8 21.7 228 2-247 5-274 (300)
15 cd04733 OYE_like_2_FMN Old yel 100.0 7.3E-34 1.6E-38 277.2 23.1 239 2-247 7-333 (338)
16 cd04735 OYE_like_4_FMN Old yel 100.0 9.9E-34 2.2E-38 277.5 21.5 237 2-247 7-324 (353)
17 cd02931 ER_like_FMN Enoate red 100.0 2.9E-33 6.4E-38 276.5 24.4 243 2-248 7-347 (382)
18 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 2E-33 4.3E-38 275.6 22.0 241 2-247 7-317 (353)
19 cd02803 OYE_like_FMN_family Ol 100.0 2.5E-33 5.4E-38 272.5 21.8 243 2-247 6-322 (327)
20 TIGR00736 nifR3_rel_arch TIM-b 100.0 3.5E-33 7.6E-38 255.8 20.0 206 16-242 1-226 (231)
21 COG1902 NemA NADH:flavin oxido 100.0 1.2E-32 2.7E-37 268.0 23.1 240 2-248 12-330 (363)
22 cd02933 OYE_like_FMN Old yello 100.0 2.5E-32 5.5E-37 265.6 24.2 231 2-247 8-325 (338)
23 cd04747 OYE_like_5_FMN Old yel 100.0 2E-32 4.3E-37 267.4 23.4 234 2-247 7-339 (361)
24 cd02929 TMADH_HD_FMN Trimethyl 100.0 3.1E-32 6.7E-37 268.2 22.4 239 2-247 14-330 (370)
25 cd02932 OYE_YqiM_FMN Old yello 100.0 5.9E-32 1.3E-36 263.7 23.4 238 2-247 7-331 (336)
26 cd04740 DHOD_1B_like Dihydroor 100.0 1.6E-31 3.4E-36 256.4 24.4 229 2-247 4-271 (296)
27 PRK08255 salicylyl-CoA 5-hydro 100.0 7.2E-31 1.6E-35 280.8 24.3 243 2-252 405-733 (765)
28 cd02940 DHPD_FMN Dihydropyrimi 100.0 2.6E-30 5.6E-35 248.1 22.2 232 2-247 6-293 (299)
29 PF00724 Oxidored_FMN: NADH:fl 100.0 3.6E-31 7.8E-36 258.4 15.3 243 2-247 8-332 (341)
30 PRK07259 dihydroorotate dehydr 100.0 1.2E-29 2.5E-34 244.0 25.0 231 2-247 6-274 (301)
31 KOG2334 tRNA-dihydrouridine sy 100.0 2.5E-29 5.5E-34 239.9 21.2 271 3-299 5-295 (477)
32 PLN02411 12-oxophytodienoate r 100.0 3.7E-29 8.1E-34 247.6 23.2 241 2-247 18-353 (391)
33 PRK10605 N-ethylmaleimide redu 100.0 4.4E-29 9.4E-34 244.9 23.4 231 2-247 9-332 (362)
34 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 6.9E-29 1.5E-33 237.3 22.8 234 2-247 3-284 (289)
35 PRK08318 dihydropyrimidine deh 100.0 3.3E-28 7E-33 244.1 23.2 229 2-246 8-293 (420)
36 cd04741 DHOD_1A_like Dihydroor 100.0 1.3E-27 2.7E-32 228.8 23.8 233 2-248 3-285 (294)
37 cd04739 DHOD_like Dihydroorota 99.9 9.4E-26 2E-30 218.7 23.8 227 2-247 6-278 (325)
38 cd04738 DHOD_2_like Dihydrooro 99.9 4.7E-26 1E-30 221.1 21.7 229 2-248 43-322 (327)
39 PRK05286 dihydroorotate dehydr 99.9 1.4E-25 2.9E-30 219.2 20.7 227 2-247 53-330 (344)
40 PRK07565 dihydroorotate dehydr 99.9 1.6E-24 3.5E-29 211.1 23.3 226 2-246 7-279 (334)
41 PLN02495 oxidoreductase, actin 99.9 2.5E-23 5.4E-28 204.0 21.4 234 2-246 15-310 (385)
42 cd02809 alpha_hydroxyacid_oxid 99.9 1.2E-22 2.7E-27 194.9 21.7 194 3-240 59-260 (299)
43 PRK02506 dihydroorotate dehydr 99.9 2.1E-22 4.5E-27 194.0 21.3 233 2-247 6-282 (310)
44 COG0167 PyrD Dihydroorotate de 99.9 3.8E-22 8.2E-27 189.4 20.4 228 2-247 6-282 (310)
45 TIGR01036 pyrD_sub2 dihydrooro 99.9 1.5E-21 3.3E-26 189.6 19.3 228 2-247 50-329 (335)
46 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 5E-21 1.1E-25 186.8 16.9 182 2-241 38-221 (369)
47 PF01180 DHO_dh: Dihydroorotat 99.9 1.7E-20 3.7E-25 179.9 18.4 229 2-247 6-285 (295)
48 PLN02826 dihydroorotate dehydr 99.8 3E-19 6.6E-24 176.9 22.9 227 2-246 78-381 (409)
49 TIGR02151 IPP_isom_2 isopenten 99.8 5.8E-18 1.2E-22 164.8 20.0 222 3-242 48-289 (333)
50 PRK05437 isopentenyl pyrophosp 99.8 1.3E-17 2.8E-22 163.2 20.0 216 4-242 56-296 (352)
51 cd02811 IDI-2_FMN Isopentenyl- 99.8 1.3E-17 2.8E-22 161.9 18.8 218 3-242 47-290 (326)
52 PRK08649 inosine 5-monophospha 99.7 1.7E-16 3.7E-21 155.4 14.6 178 2-239 41-218 (368)
53 TIGR03151 enACPred_II putative 99.7 6.7E-16 1.4E-20 148.6 17.7 192 5-245 8-199 (307)
54 cd04730 NPD_like 2-Nitropropan 99.7 2E-15 4.4E-20 139.9 17.1 192 8-245 2-194 (236)
55 cd00381 IMPDH IMPDH: The catal 99.7 8.7E-15 1.9E-19 141.9 19.6 203 4-245 30-235 (325)
56 TIGR02708 L_lactate_ox L-lacta 99.6 1.5E-14 3.2E-19 141.2 18.0 207 4-241 76-317 (367)
57 PRK04180 pyridoxal biosynthesi 99.6 3.3E-15 7.1E-20 139.1 9.8 157 80-244 27-242 (293)
58 cd02922 FCB2_FMN Flavocytochro 99.6 6.7E-14 1.4E-18 136.3 19.0 213 4-244 60-308 (344)
59 cd04722 TIM_phosphate_binding 99.6 2.4E-13 5.2E-18 121.0 20.5 195 11-237 1-200 (200)
60 cd04737 LOX_like_FMN L-Lactate 99.6 3E-14 6.5E-19 138.7 15.5 209 4-243 68-312 (351)
61 PF03060 NMO: Nitronate monoox 99.5 3.9E-13 8.5E-18 130.9 17.4 196 5-245 8-228 (330)
62 cd04736 MDH_FMN Mandelate dehy 99.5 2E-12 4.3E-17 126.1 16.7 205 4-241 60-323 (361)
63 KOG1436 Dihydroorotate dehydro 99.4 3.8E-12 8.2E-17 118.6 16.5 232 4-251 90-375 (398)
64 PRK14024 phosphoribosyl isomer 99.4 1.5E-12 3.4E-17 121.3 14.0 121 111-245 103-231 (241)
65 PF01070 FMN_dh: FMN-dependent 99.4 9.6E-13 2.1E-17 128.9 12.5 206 3-241 53-314 (356)
66 PLN02535 glycolate oxidase 99.4 9E-12 2E-16 121.7 17.2 211 4-244 68-315 (364)
67 PLN02979 glycolate oxidase 99.4 9.7E-12 2.1E-16 120.5 17.1 208 4-241 65-312 (366)
68 PRK11197 lldD L-lactate dehydr 99.4 7E-12 1.5E-16 123.0 16.3 205 4-241 66-334 (381)
69 cd03332 LMO_FMN L-Lactate 2-mo 99.4 9.6E-12 2.1E-16 122.3 16.8 206 4-240 81-341 (383)
70 PLN02493 probable peroxisomal 99.4 1.1E-11 2.5E-16 120.9 17.0 208 4-241 66-313 (367)
71 cd04743 NPD_PKS 2-Nitropropane 99.4 4.4E-12 9.5E-17 121.5 13.2 194 8-245 2-211 (320)
72 KOG0134 NADH:flavin oxidoreduc 99.4 4.1E-12 8.9E-17 123.2 12.8 169 77-249 174-361 (400)
73 cd04742 NPD_FabD 2-Nitropropan 99.4 2.7E-11 5.8E-16 119.9 17.8 221 5-245 10-257 (418)
74 PRK05458 guanosine 5'-monophos 99.3 6.8E-11 1.5E-15 113.9 18.9 197 3-244 32-238 (326)
75 PRK06843 inosine 5-monophospha 99.3 5.4E-11 1.2E-15 117.4 17.0 203 3-244 37-293 (404)
76 cd02808 GltS_FMN Glutamate syn 99.3 8.8E-11 1.9E-15 116.8 17.1 116 117-243 196-321 (392)
77 COG2070 Dioxygenases related t 99.3 4E-11 8.6E-16 116.6 13.9 201 2-245 8-222 (336)
78 TIGR02814 pfaD_fam PfaD family 99.3 1.3E-10 2.7E-15 115.9 17.6 216 5-245 15-262 (444)
79 PRK01033 imidazole glycerol ph 99.3 1.4E-10 3.1E-15 109.2 15.1 177 28-242 39-232 (258)
80 cd04731 HisF The cyclase subun 99.2 1.6E-10 3.5E-15 107.8 14.2 127 88-242 91-229 (243)
81 TIGR01306 GMP_reduct_2 guanosi 99.2 1.7E-09 3.8E-14 103.9 20.3 196 3-242 29-233 (321)
82 cd04732 HisA HisA. Phosphorib 99.2 3.5E-10 7.6E-15 104.7 14.4 147 67-244 74-227 (234)
83 PRK00748 1-(5-phosphoribosyl)- 99.2 3.5E-10 7.7E-15 104.7 14.0 129 85-242 91-226 (233)
84 TIGR03572 WbuZ glycosyl amidat 99.2 7E-10 1.5E-14 102.8 15.1 144 64-239 74-230 (232)
85 TIGR00007 phosphoribosylformim 99.2 1.1E-09 2.3E-14 101.4 15.8 128 84-242 88-224 (230)
86 PF00478 IMPDH: IMP dehydrogen 99.1 3.8E-10 8.2E-15 109.5 12.3 204 2-244 31-248 (352)
87 PRK13585 1-(5-phosphoribosyl)- 99.1 1.8E-09 4E-14 100.5 16.5 134 84-246 92-232 (241)
88 KOG0538 Glycolate oxidase [Ene 99.1 3.6E-09 7.9E-14 98.6 16.9 207 4-242 64-313 (363)
89 PRK02083 imidazole glycerol ph 99.1 1.8E-09 3.8E-14 101.5 15.1 124 88-242 94-233 (253)
90 TIGR01305 GMP_reduct_1 guanosi 99.1 2E-08 4.3E-13 96.1 20.8 196 4-242 41-247 (343)
91 PTZ00314 inosine-5'-monophosph 99.0 6.9E-09 1.5E-13 106.1 17.1 133 75-244 239-381 (495)
92 COG1304 idi Isopentenyl diphos 99.0 1.7E-09 3.8E-14 105.6 10.9 106 116-242 200-308 (360)
93 PRK05096 guanosine 5'-monophos 99.0 4.4E-08 9.6E-13 93.7 18.1 193 7-244 45-250 (346)
94 TIGR00343 pyridoxal 5'-phospha 99.0 1.8E-08 3.9E-13 94.0 15.0 144 81-242 21-234 (287)
95 PLN02274 inosine-5'-monophosph 99.0 6.1E-08 1.3E-12 99.3 20.1 132 83-244 253-388 (505)
96 TIGR00735 hisF imidazoleglycer 99.0 1.6E-08 3.5E-13 95.0 14.5 183 23-242 34-235 (254)
97 TIGR01302 IMP_dehydrog inosine 98.9 1.2E-07 2.6E-12 96.2 20.5 134 76-246 223-366 (450)
98 cd04728 ThiG Thiazole synthase 98.9 2.8E-07 6.2E-12 84.5 20.5 201 2-241 3-209 (248)
99 COG0106 HisA Phosphoribosylfor 98.9 5.2E-08 1.1E-12 89.2 14.1 144 66-244 75-229 (241)
100 PRK13125 trpA tryptophan synth 98.9 5.5E-08 1.2E-12 90.9 14.4 155 74-241 15-219 (244)
101 KOG1799 Dihydropyrimidine dehy 98.8 4.9E-09 1.1E-13 99.1 6.4 166 74-245 215-394 (471)
102 cd00331 IGPS Indole-3-glycerol 98.8 2.2E-07 4.8E-12 85.2 15.6 51 195-245 159-210 (217)
103 PRK00208 thiG thiazole synthas 98.8 1.4E-06 3E-11 80.1 20.1 203 2-241 4-209 (250)
104 cd04727 pdxS PdxS is a subunit 98.8 1.9E-07 4.1E-12 87.2 14.4 157 80-244 18-233 (283)
105 PRK05567 inosine 5'-monophosph 98.8 3.9E-07 8.5E-12 93.4 18.2 111 120-243 254-367 (486)
106 cd00945 Aldolase_Class_I Class 98.8 7.2E-07 1.6E-11 79.8 17.6 147 64-236 48-201 (201)
107 PRK02083 imidazole glycerol ph 98.7 4.2E-08 9.1E-13 92.1 9.4 80 159-248 36-115 (253)
108 cd04729 NanE N-acetylmannosami 98.7 1.5E-07 3.3E-12 86.4 12.7 129 82-244 84-214 (219)
109 COG0214 SNZ1 Pyridoxine biosyn 98.7 5.8E-08 1.3E-12 87.3 9.4 146 80-243 30-244 (296)
110 cd04731 HisF The cyclase subun 98.7 6.4E-08 1.4E-12 90.3 9.5 80 159-248 33-112 (243)
111 PRK01130 N-acetylmannosamine-6 98.7 6.1E-07 1.3E-11 82.5 14.9 131 82-245 80-210 (221)
112 PRK00278 trpC indole-3-glycero 98.6 2.4E-06 5.1E-11 80.6 17.3 156 63-245 48-249 (260)
113 cd04732 HisA HisA. Phosphorib 98.6 1.8E-07 4E-12 86.5 9.7 80 159-248 35-114 (234)
114 PF04131 NanE: Putative N-acet 98.6 1.4E-06 3E-11 77.0 13.5 129 82-248 56-184 (192)
115 cd03319 L-Ala-DL-Glu_epimerase 98.6 3.1E-06 6.6E-11 82.1 17.1 135 62-235 121-257 (316)
116 TIGR01304 IMP_DH_rel_2 IMP deh 98.5 1.3E-06 2.8E-11 86.0 13.2 143 75-244 140-292 (369)
117 KOG1606 Stationary phase-induc 98.5 3.8E-07 8.2E-12 80.9 8.4 147 81-245 32-247 (296)
118 PLN02446 (5-phosphoribosyl)-5- 98.5 3.9E-06 8.4E-11 78.5 15.0 142 65-240 82-242 (262)
119 TIGR00735 hisF imidazoleglycer 98.5 5.3E-07 1.2E-11 84.7 9.4 81 160-251 37-117 (254)
120 PRK08649 inosine 5-monophospha 98.5 2E-06 4.3E-11 84.8 12.5 145 75-245 139-294 (368)
121 PF05690 ThiG: Thiazole biosyn 98.4 9.6E-05 2.1E-09 67.4 21.5 205 2-242 2-210 (247)
122 PF01645 Glu_synthase: Conserv 98.4 1.1E-06 2.3E-11 86.2 9.5 115 117-242 185-309 (368)
123 CHL00162 thiG thiamin biosynth 98.4 9.1E-05 2E-09 68.3 20.1 207 2-244 10-226 (267)
124 PRK07107 inosine 5-monophospha 98.4 5.6E-06 1.2E-10 84.9 13.7 134 77-243 241-388 (502)
125 PRK13587 1-(5-phosphoribosyl)- 98.3 1.8E-05 3.8E-10 73.5 14.8 139 68-241 78-226 (234)
126 TIGR00262 trpA tryptophan synt 98.3 3.9E-05 8.6E-10 72.1 17.1 169 67-240 12-231 (256)
127 TIGR01919 hisA-trpF 1-(5-phosp 98.3 2.7E-05 5.8E-10 72.7 15.2 143 66-243 74-232 (243)
128 PF00977 His_biosynth: Histidi 98.3 1.6E-05 3.5E-10 73.6 13.3 143 67-242 74-226 (229)
129 PRK07807 inosine 5-monophospha 98.2 2.1E-05 4.6E-10 80.2 14.7 134 80-245 229-368 (479)
130 KOG2550 IMP dehydrogenase/GMP 98.2 1.6E-05 3.4E-10 77.3 12.5 63 161-236 258-320 (503)
131 CHL00200 trpA tryptophan synth 98.2 4.7E-05 1E-09 71.8 15.6 165 66-241 16-236 (263)
132 TIGR01769 GGGP geranylgeranylg 98.2 7.3E-05 1.6E-09 67.8 16.0 43 193-236 163-205 (205)
133 TIGR03128 RuMP_HxlA 3-hexulose 98.2 0.00021 4.5E-09 64.8 18.9 186 18-244 8-194 (206)
134 TIGR01303 IMP_DH_rel_1 IMP deh 98.2 3.1E-05 6.7E-10 79.0 14.6 130 81-243 228-364 (475)
135 TIGR00259 thylakoid_BtpA membr 98.2 0.00017 3.7E-09 67.4 18.1 197 21-243 28-234 (257)
136 PRK14114 1-(5-phosphoribosyl)- 98.2 3.4E-05 7.3E-10 71.9 13.4 140 68-243 75-230 (241)
137 cd04724 Tryptophan_synthase_al 98.2 5.7E-05 1.2E-09 70.5 14.8 158 74-240 11-219 (242)
138 PRK00748 1-(5-phosphoribosyl)- 98.1 2E-05 4.3E-10 72.9 11.1 79 159-247 36-114 (233)
139 TIGR01163 rpe ribulose-phospha 98.1 9.8E-05 2.1E-09 66.9 15.2 152 69-245 3-202 (210)
140 PLN02591 tryptophan synthase 98.1 0.00013 2.7E-09 68.4 15.8 162 74-240 13-222 (250)
141 cd03316 MR_like Mandelate race 98.1 0.00012 2.7E-09 72.0 15.9 138 65-235 127-269 (357)
142 PRK13586 1-(5-phosphoribosyl)- 98.1 0.00014 3.1E-09 67.3 15.1 136 69-242 76-224 (232)
143 PRK00507 deoxyribose-phosphate 98.1 0.00016 3.5E-09 66.5 15.1 131 80-238 77-210 (221)
144 COG3010 NanE Putative N-acetyl 98.1 0.00022 4.7E-09 63.6 15.2 48 194-244 169-216 (229)
145 PF04481 DUF561: Protein of un 98.1 4.2E-05 9.1E-10 68.6 10.7 153 63-239 60-217 (242)
146 cd00958 DhnA Class I fructose- 98.1 0.00044 9.5E-09 64.1 18.1 140 75-244 74-222 (235)
147 PRK13585 1-(5-phosphoribosyl)- 98.0 2.1E-05 4.6E-10 73.1 9.1 76 162-247 41-116 (241)
148 TIGR03572 WbuZ glycosyl amidat 98.0 2.5E-05 5.4E-10 72.3 9.6 79 159-247 36-114 (232)
149 TIGR00734 hisAF_rel hisA/hisF 98.0 7.3E-05 1.6E-09 68.8 12.1 47 194-241 172-218 (221)
150 COG2022 ThiG Uncharacterized e 98.0 0.0016 3.5E-08 59.2 20.1 203 2-240 10-215 (262)
151 PRK07695 transcriptional regul 98.0 0.00013 2.8E-09 66.0 13.4 75 162-244 111-185 (201)
152 TIGR01949 AroFGH_arch predicte 98.0 0.0004 8.7E-09 65.4 17.1 149 64-245 70-236 (258)
153 TIGR02129 hisA_euk phosphoribo 98.0 0.00023 5E-09 66.4 14.7 140 67-241 77-237 (253)
154 cd00429 RPE Ribulose-5-phospha 98.0 0.00025 5.4E-09 64.2 14.8 156 67-245 2-203 (211)
155 cd04723 HisA_HisF Phosphoribos 98.0 0.00029 6.3E-09 65.4 15.2 140 67-242 79-224 (233)
156 TIGR01768 GGGP-family geranylg 98.0 0.00043 9.3E-09 63.5 15.7 54 193-246 165-218 (223)
157 PRK08883 ribulose-phosphate 3- 97.9 0.00044 9.5E-09 63.6 15.7 151 67-244 2-203 (220)
158 PRK13111 trpA tryptophan synth 97.9 0.00058 1.3E-08 64.3 16.8 168 67-240 14-232 (258)
159 cd00452 KDPG_aldolase KDPG and 97.9 0.00028 6.2E-09 63.3 13.8 147 65-240 4-175 (190)
160 cd03315 MLE_like Muconate lact 97.9 0.00089 1.9E-08 63.2 17.0 133 64-235 74-209 (265)
161 PLN02334 ribulose-phosphate 3- 97.9 0.001 2.2E-08 61.6 16.8 144 63-245 64-211 (229)
162 COG0107 HisF Imidazoleglycerol 97.9 6E-05 1.3E-09 68.3 8.2 79 159-247 36-114 (256)
163 PRK04128 1-(5-phosphoribosyl)- 97.9 0.00046 1E-08 63.8 14.3 131 68-242 75-217 (228)
164 PTZ00170 D-ribulose-5-phosphat 97.9 0.00097 2.1E-08 61.7 16.4 155 66-244 8-209 (228)
165 PRK04128 1-(5-phosphoribosyl)- 97.8 6.9E-05 1.5E-09 69.3 8.3 76 162-250 39-114 (228)
166 PRK04169 geranylgeranylglycery 97.8 0.0016 3.4E-08 60.3 17.0 50 194-244 171-221 (232)
167 PRK11750 gltB glutamate syntha 97.8 0.00018 3.9E-09 80.7 12.6 114 118-242 979-1102(1485)
168 PRK11840 bifunctional sulfur c 97.8 0.0037 8E-08 60.1 19.8 205 2-244 77-286 (326)
169 cd00959 DeoC 2-deoxyribose-5-p 97.8 0.00055 1.2E-08 62.1 13.6 133 76-233 68-200 (203)
170 COG0159 TrpA Tryptophan syntha 97.8 0.0025 5.4E-08 59.7 17.8 162 74-241 28-238 (265)
171 PRK14024 phosphoribosyl isomer 97.7 0.00014 3.1E-09 67.8 9.0 78 160-248 39-116 (241)
172 TIGR00007 phosphoribosylformim 97.7 0.00018 3.9E-09 66.4 9.5 80 159-248 34-113 (230)
173 PF03437 BtpA: BtpA family; I 97.7 0.00079 1.7E-08 63.0 13.5 198 21-245 29-236 (254)
174 TIGR00126 deoC deoxyribose-pho 97.7 0.0007 1.5E-08 61.7 12.8 131 80-236 73-204 (211)
175 cd00405 PRAI Phosphoribosylant 97.7 0.0031 6.8E-08 57.1 17.0 184 17-245 4-190 (203)
176 PF00218 IGPS: Indole-3-glycer 97.7 0.00082 1.8E-08 63.0 13.1 150 79-245 70-247 (254)
177 PRK06806 fructose-bisphosphate 97.7 0.0065 1.4E-07 57.9 19.3 153 64-244 74-238 (281)
178 PRK07226 fructose-bisphosphate 97.7 0.00098 2.1E-08 63.1 13.7 136 77-245 93-240 (267)
179 PRK08005 epimerase; Validated 97.7 0.0047 1E-07 56.3 17.4 154 67-244 3-199 (210)
180 PRK09140 2-dehydro-3-deoxy-6-p 97.7 0.0049 1.1E-07 56.1 17.4 152 64-243 9-186 (206)
181 PRK07455 keto-hydroxyglutarate 97.6 0.0024 5.2E-08 57.2 15.1 148 64-241 11-185 (187)
182 PRK13587 1-(5-phosphoribosyl)- 97.6 0.00024 5.2E-09 66.0 8.9 82 159-251 37-119 (234)
183 PRK13307 bifunctional formalde 97.6 0.0082 1.8E-07 59.7 20.0 141 64-244 226-366 (391)
184 PRK05581 ribulose-phosphate 3- 97.6 0.0014 3.1E-08 59.8 13.7 157 67-245 6-207 (220)
185 COG0036 Rpe Pentose-5-phosphat 97.6 0.0023 5.1E-08 58.1 14.6 154 65-245 4-206 (220)
186 COG0434 SgcQ Predicted TIM-bar 97.5 0.0071 1.5E-07 55.3 16.4 196 21-243 34-239 (263)
187 cd00377 ICL_PEPM Members of th 97.5 0.013 2.8E-07 54.7 19.0 207 9-240 8-230 (243)
188 TIGR01182 eda Entner-Doudoroff 97.5 0.0015 3.3E-08 59.2 12.3 155 64-245 7-185 (204)
189 cd02812 PcrB_like PcrB_like pr 97.5 0.0006 1.3E-08 62.4 9.7 75 159-247 141-215 (219)
190 TIGR01303 IMP_DH_rel_1 IMP deh 97.5 0.0007 1.5E-08 69.1 10.9 63 162-237 233-295 (475)
191 PRK01033 imidazole glycerol ph 97.5 0.00053 1.1E-08 64.6 9.4 79 159-247 36-114 (258)
192 TIGR02317 prpB methylisocitrat 97.5 0.016 3.6E-07 55.2 19.5 208 9-242 12-235 (285)
193 PRK08745 ribulose-phosphate 3- 97.5 0.0084 1.8E-07 55.2 17.0 154 67-244 6-207 (223)
194 PF00977 His_biosynth: Histidi 97.5 0.00027 5.7E-09 65.5 6.8 79 159-247 35-113 (229)
195 PRK06552 keto-hydroxyglutarate 97.4 0.003 6.5E-08 57.8 13.0 149 64-240 12-187 (213)
196 cd04726 KGPDC_HPS 3-Keto-L-gul 97.4 0.01 2.2E-07 53.4 16.4 140 64-244 53-194 (202)
197 PRK13957 indole-3-glycerol-pho 97.4 0.007 1.5E-07 56.4 15.4 148 80-245 64-239 (247)
198 PRK07807 inosine 5-monophospha 97.4 0.0017 3.7E-08 66.4 12.4 67 162-241 235-303 (479)
199 PF01791 DeoC: DeoC/LacD famil 97.4 0.0009 2E-08 62.1 9.4 139 80-241 79-235 (236)
200 PF01884 PcrB: PcrB family; I 97.4 0.00077 1.7E-08 62.0 8.6 70 164-245 151-220 (230)
201 PRK14114 1-(5-phosphoribosyl)- 97.4 0.00071 1.5E-08 63.1 8.3 80 159-250 36-115 (241)
202 PRK00043 thiE thiamine-phospha 97.4 0.0013 2.8E-08 59.6 9.9 75 164-244 122-196 (212)
203 COG0069 GltB Glutamate synthas 97.3 0.0021 4.5E-08 65.0 11.7 114 118-242 286-409 (485)
204 PLN02460 indole-3-glycerol-pho 97.3 0.0069 1.5E-07 58.8 14.6 150 79-245 141-326 (338)
205 TIGR02129 hisA_euk phosphoribo 97.3 0.001 2.3E-08 62.0 8.4 71 159-246 44-118 (253)
206 cd00564 TMP_TenI Thiamine mono 97.3 0.0018 3.9E-08 57.5 9.6 74 164-244 113-186 (196)
207 PRK13802 bifunctional indole-3 97.3 0.0048 1E-07 65.6 14.1 150 79-245 72-249 (695)
208 TIGR00693 thiE thiamine-phosph 97.3 0.002 4.4E-08 57.8 9.9 75 164-244 114-188 (196)
209 PRK11320 prpB 2-methylisocitra 97.3 0.053 1.1E-06 51.9 19.9 206 9-240 16-238 (292)
210 TIGR01859 fruc_bis_ald_ fructo 97.3 0.031 6.8E-07 53.3 18.3 79 150-240 154-234 (282)
211 TIGR02319 CPEP_Pphonmut carbox 97.3 0.052 1.1E-06 52.0 19.7 207 9-241 15-238 (294)
212 PRK06015 keto-hydroxyglutarate 97.2 0.0083 1.8E-07 54.3 12.9 153 64-243 3-179 (201)
213 PRK07028 bifunctional hexulose 97.2 0.011 2.4E-07 59.9 15.2 127 82-245 73-199 (430)
214 TIGR01919 hisA-trpF 1-(5-phosp 97.2 0.0019 4E-08 60.4 8.9 77 160-247 38-114 (243)
215 PRK07114 keto-hydroxyglutarate 97.2 0.0057 1.2E-07 56.2 11.8 155 64-245 14-197 (222)
216 COG0274 DeoC Deoxyribose-phosp 97.2 0.0045 9.8E-08 56.3 10.9 138 73-234 72-210 (228)
217 PF00290 Trp_syntA: Tryptophan 97.2 0.0054 1.2E-07 57.7 11.7 169 67-241 12-231 (259)
218 COG0269 SgbH 3-hexulose-6-phos 97.1 0.011 2.4E-07 53.5 13.0 144 63-244 55-200 (217)
219 PF00834 Ribul_P_3_epim: Ribul 97.1 0.0032 7E-08 57.0 9.5 149 67-242 2-200 (201)
220 COG0134 TrpC Indole-3-glycerol 97.1 0.024 5.3E-07 52.8 15.1 147 82-245 71-245 (254)
221 COG0106 HisA Phosphoribosylfor 97.1 0.0024 5.1E-08 58.9 8.3 79 160-248 38-116 (241)
222 PRK07315 fructose-bisphosphate 97.1 0.075 1.6E-06 51.0 19.0 83 149-244 154-240 (293)
223 TIGR02320 PEP_mutase phosphoen 97.1 0.12 2.5E-06 49.5 20.1 158 62-240 76-244 (285)
224 PRK13586 1-(5-phosphoribosyl)- 97.0 0.003 6.6E-08 58.5 8.8 78 159-247 36-113 (232)
225 PLN02617 imidazole glycerol ph 97.0 0.0095 2.1E-07 61.8 13.1 135 80-237 337-513 (538)
226 COG0352 ThiE Thiamine monophos 97.0 0.0045 9.7E-08 56.4 9.4 75 163-245 121-195 (211)
227 COG1646 Predicted phosphate-bi 97.0 0.031 6.8E-07 51.1 14.7 41 207-247 191-231 (240)
228 PF01680 SOR_SNZ: SOR/SNZ fami 97.0 0.0014 3.1E-08 57.1 5.6 117 81-233 25-142 (208)
229 PF01081 Aldolase: KDPG and KH 97.0 0.01 2.2E-07 53.5 11.3 154 65-245 8-185 (196)
230 PLN02446 (5-phosphoribosyl)-5- 97.0 0.0035 7.5E-08 58.8 8.4 74 159-247 49-126 (262)
231 cd04723 HisA_HisF Phosphoribos 97.0 0.0037 8.1E-08 58.0 8.6 78 159-248 41-118 (233)
232 PRK05283 deoxyribose-phosphate 96.9 0.016 3.5E-07 54.3 12.6 134 77-231 83-219 (257)
233 PRK05718 keto-hydroxyglutarate 96.9 0.016 3.6E-07 52.9 12.2 154 64-245 14-191 (212)
234 PRK06801 hypothetical protein; 96.8 0.054 1.2E-06 51.8 15.5 151 64-242 74-239 (286)
235 PRK07565 dihydroorotate dehydr 96.8 0.014 3.1E-07 57.0 11.9 107 119-235 86-196 (334)
236 PRK02615 thiamine-phosphate py 96.8 0.0089 1.9E-07 58.6 10.1 73 164-244 258-330 (347)
237 PRK05848 nicotinate-nucleotide 96.8 0.013 2.9E-07 55.5 10.8 93 122-245 168-266 (273)
238 cd06556 ICL_KPHMT Members of t 96.8 0.074 1.6E-06 49.5 15.6 158 17-216 17-200 (240)
239 PLN02617 imidazole glycerol ph 96.8 0.0058 1.3E-07 63.3 9.0 78 159-243 273-361 (538)
240 PRK04302 triosephosphate isome 96.8 0.0094 2E-07 54.9 9.5 152 64-245 56-211 (223)
241 PRK03512 thiamine-phosphate py 96.7 0.014 3E-07 53.4 10.0 77 163-245 119-195 (211)
242 TIGR02321 Pphn_pyruv_hyd phosp 96.7 0.37 8E-06 46.2 20.0 207 8-241 13-240 (290)
243 PRK07428 nicotinate-nucleotide 96.7 0.024 5.1E-07 54.2 11.8 93 122-245 182-280 (288)
244 KOG2550 IMP dehydrogenase/GMP 96.7 0.013 2.8E-07 57.5 10.0 128 82-242 255-389 (503)
245 PRK06512 thiamine-phosphate py 96.6 0.013 2.8E-07 54.0 9.5 74 163-245 128-201 (221)
246 PRK08091 ribulose-phosphate 3- 96.6 0.15 3.2E-06 47.1 16.3 155 64-244 12-215 (228)
247 PF00478 IMPDH: IMP dehydrogen 96.6 0.009 2E-07 58.5 8.7 63 163-238 117-179 (352)
248 PF02581 TMP-TENI: Thiamine mo 96.6 0.0074 1.6E-07 53.6 7.5 69 163-239 112-180 (180)
249 cd06557 KPHMT-like Ketopantoat 96.6 0.038 8.2E-07 51.9 12.3 131 81-235 23-177 (254)
250 cd00377 ICL_PEPM Members of th 96.5 0.052 1.1E-06 50.7 12.8 147 81-236 20-180 (243)
251 COG0107 HisF Imidazoleglycerol 96.5 0.035 7.6E-07 50.7 10.8 124 85-237 91-230 (256)
252 cd03329 MR_like_4 Mandelate ra 96.5 0.075 1.6E-06 52.6 14.4 124 75-235 143-270 (368)
253 PRK06852 aldolase; Validated 96.5 0.3 6.5E-06 47.0 17.8 110 121-244 155-273 (304)
254 PRK08227 autoinducer 2 aldolas 96.5 0.13 2.9E-06 48.5 15.1 149 63-244 73-234 (264)
255 cd00381 IMPDH IMPDH: The catal 96.4 0.031 6.8E-07 54.5 10.9 95 119-236 69-163 (325)
256 PRK09722 allulose-6-phosphate 96.4 0.17 3.7E-06 46.8 15.1 151 66-241 4-203 (229)
257 PRK14057 epimerase; Provisiona 96.3 0.35 7.6E-06 45.3 16.9 156 63-244 18-229 (254)
258 PF04131 NanE: Putative N-acet 96.3 0.12 2.7E-06 45.9 13.1 111 80-234 2-117 (192)
259 PRK09427 bifunctional indole-3 96.3 0.17 3.7E-06 51.5 16.0 146 81-245 74-247 (454)
260 cd04740 DHOD_1B_like Dihydroor 96.3 0.14 3.1E-06 49.0 14.8 144 81-235 24-185 (296)
261 PRK01222 N-(5'-phosphoribosyl) 96.2 0.43 9.3E-06 43.5 16.8 181 16-244 7-191 (210)
262 PRK05096 guanosine 5'-monophos 96.2 0.042 9.1E-07 53.2 10.5 99 119-237 81-180 (346)
263 PF13714 PEP_mutase: Phosphoen 96.2 0.089 1.9E-06 49.0 12.3 201 8-240 7-223 (238)
264 PRK00311 panB 3-methyl-2-oxobu 96.2 0.25 5.5E-06 46.6 15.4 155 18-215 21-204 (264)
265 PLN02424 ketopantoate hydroxym 96.2 0.14 3.1E-06 49.5 13.8 129 56-211 26-155 (332)
266 PF00701 DHDPS: Dihydrodipicol 96.2 0.28 6E-06 46.9 15.9 156 61-256 67-224 (289)
267 PLN02424 ketopantoate hydroxym 96.1 0.15 3.2E-06 49.4 13.6 157 18-215 41-225 (332)
268 COG2513 PrpB PEP phosphonomuta 96.1 0.57 1.2E-05 44.4 17.1 198 18-239 24-237 (289)
269 TIGR01305 GMP_reduct_1 guanosi 96.0 0.062 1.3E-06 52.1 10.7 98 119-236 80-178 (343)
270 PRK07998 gatY putative fructos 96.0 0.57 1.2E-05 44.7 16.9 150 64-242 74-235 (283)
271 cd06557 KPHMT-like Ketopantoat 96.0 0.27 5.8E-06 46.2 14.4 156 18-215 18-201 (254)
272 TIGR02317 prpB methylisocitrat 96.0 0.13 2.9E-06 49.0 12.5 87 81-175 24-110 (285)
273 PRK11320 prpB 2-methylisocitra 95.9 0.15 3.3E-06 48.8 12.8 86 81-174 28-114 (292)
274 PRK00230 orotidine 5'-phosphat 95.9 0.14 3.1E-06 47.3 12.3 139 64-244 53-215 (230)
275 PTZ00314 inosine-5'-monophosph 95.9 0.024 5.1E-07 58.5 7.7 62 162-236 249-310 (495)
276 cd00331 IGPS Indole-3-glycerol 95.9 0.03 6.5E-07 51.1 7.5 71 159-242 37-107 (217)
277 TIGR00222 panB 3-methyl-2-oxob 95.9 0.13 2.9E-06 48.4 11.8 150 57-235 7-179 (263)
278 cd01568 QPRTase_NadC Quinolina 95.8 0.11 2.4E-06 49.2 11.5 39 206-245 226-264 (269)
279 PRK07259 dihydroorotate dehydr 95.8 0.42 9.2E-06 45.9 15.7 143 81-235 27-188 (301)
280 TIGR02321 Pphn_pyruv_hyd phosp 95.8 0.26 5.6E-06 47.2 13.9 86 81-174 26-111 (290)
281 cd06556 ICL_KPHMT Members of t 95.8 0.19 4.2E-06 46.8 12.7 131 81-236 23-176 (240)
282 TIGR02320 PEP_mutase phosphoen 95.8 0.13 2.8E-06 49.2 11.7 84 81-173 20-112 (285)
283 TIGR00222 panB 3-methyl-2-oxob 95.8 0.41 8.8E-06 45.1 14.8 156 17-214 20-202 (263)
284 PRK00311 panB 3-methyl-2-oxobu 95.8 0.15 3.2E-06 48.2 11.9 124 60-211 10-134 (264)
285 TIGR00734 hisAF_rel hisA/hisF 95.8 0.035 7.6E-07 51.1 7.6 75 160-247 43-119 (221)
286 TIGR01361 DAHP_synth_Bsub phos 95.8 0.47 1E-05 44.7 15.3 109 112-237 115-230 (260)
287 PRK13813 orotidine 5'-phosphat 95.7 0.3 6.6E-06 44.4 13.5 124 84-244 74-200 (215)
288 KOG2334 tRNA-dihydrouridine sy 95.7 0.0061 1.3E-07 60.0 2.3 132 94-246 290-421 (477)
289 PRK07709 fructose-bisphosphate 95.6 1.4 3.1E-05 42.0 18.1 148 65-242 78-239 (285)
290 PRK12290 thiE thiamine-phospha 95.6 0.064 1.4E-06 53.8 9.2 76 163-244 317-400 (437)
291 PRK02227 hypothetical protein; 95.6 0.29 6.3E-06 45.2 12.8 129 83-238 13-153 (238)
292 PRK08999 hypothetical protein; 95.6 0.049 1.1E-06 52.6 8.2 69 163-239 243-311 (312)
293 PRK05458 guanosine 5'-monophos 95.6 0.084 1.8E-06 51.4 9.7 97 118-236 70-168 (326)
294 cd03321 mandelate_racemase Man 95.5 0.31 6.7E-06 48.0 13.8 132 66-235 132-266 (355)
295 PRK08072 nicotinate-nucleotide 95.5 0.17 3.8E-06 48.1 11.3 63 164-245 206-269 (277)
296 cd01572 QPRTase Quinolinate ph 95.5 0.13 2.8E-06 48.8 10.4 62 164-244 200-262 (268)
297 PF09370 TIM-br_sig_trns: TIM- 95.5 0.029 6.3E-07 52.5 5.9 155 63-239 80-249 (268)
298 PRK12737 gatY tagatose-bisphos 95.4 1.8 4E-05 41.3 18.0 112 116-241 111-237 (284)
299 TIGR00078 nadC nicotinate-nucl 95.4 0.19 4.2E-06 47.5 11.3 91 124-245 166-259 (265)
300 COG1830 FbaB DhnA-type fructos 95.4 0.4 8.7E-06 44.9 13.0 149 63-244 76-245 (265)
301 COG2513 PrpB PEP phosphonomuta 95.4 0.21 4.6E-06 47.3 11.2 170 59-246 12-194 (289)
302 TIGR01302 IMP_dehydrog inosine 95.3 0.058 1.3E-06 55.0 8.1 61 163-236 233-293 (450)
303 TIGR01306 GMP_reduct_2 guanosi 95.3 0.15 3.2E-06 49.5 10.2 97 118-236 67-165 (321)
304 PRK09250 fructose-bisphosphate 95.2 0.79 1.7E-05 44.8 15.1 169 64-244 125-326 (348)
305 PRK13957 indole-3-glycerol-pho 95.2 0.093 2E-06 49.0 8.4 71 159-242 67-137 (247)
306 TIGR01858 tag_bisphos_ald clas 95.2 2.3 5E-05 40.6 18.0 149 64-242 72-236 (282)
307 PRK08610 fructose-bisphosphate 95.2 0.81 1.8E-05 43.7 14.8 146 65-240 78-237 (286)
308 PRK09195 gatY tagatose-bisphos 95.2 2.3 5E-05 40.6 17.9 147 64-240 74-236 (284)
309 PRK05437 isopentenyl pyrophosp 95.2 0.61 1.3E-05 46.0 14.4 116 113-236 99-217 (352)
310 PRK12858 tagatose 1,6-diphosph 95.2 0.34 7.4E-06 47.5 12.5 154 81-244 110-284 (340)
311 cd00408 DHDPS-like Dihydrodipi 95.2 3 6.4E-05 39.5 23.0 157 61-256 63-220 (281)
312 cd00947 TBP_aldolase_IIB Tagat 95.1 2.7 5.9E-05 40.0 18.1 153 63-242 68-232 (276)
313 COG4948 L-alanine-DL-glutamate 95.1 0.44 9.5E-06 47.2 13.3 123 75-235 143-268 (372)
314 PRK08185 hypothetical protein; 95.1 3.3 7.1E-05 39.6 19.5 116 117-242 106-234 (283)
315 PRK04147 N-acetylneuraminate l 95.1 3.4 7.3E-05 39.6 22.1 158 60-257 69-227 (293)
316 PF04476 DUF556: Protein of un 95.0 0.85 1.8E-05 42.0 13.8 137 83-246 13-161 (235)
317 TIGR02319 CPEP_Pphonmut carbox 95.0 0.43 9.2E-06 45.8 12.4 86 81-174 27-113 (294)
318 PRK09196 fructose-1,6-bisphosp 95.0 2.6 5.6E-05 41.4 17.8 160 65-241 76-282 (347)
319 cd00408 DHDPS-like Dihydrodipi 94.9 0.66 1.4E-05 44.0 13.6 126 75-227 16-149 (281)
320 TIGR00167 cbbA ketose-bisphosp 94.9 3.7 8E-05 39.3 18.5 115 116-242 114-242 (288)
321 PRK05742 nicotinate-nucleotide 94.9 0.16 3.5E-06 48.3 9.1 63 164-245 207-270 (277)
322 cd03325 D-galactonate_dehydrat 94.9 1.3 2.7E-05 43.7 15.9 140 66-235 114-256 (352)
323 PRK06843 inosine 5-monophospha 94.9 0.12 2.6E-06 51.7 8.6 61 163-236 162-222 (404)
324 PF01081 Aldolase: KDPG and KH 94.9 0.23 5E-06 44.8 9.7 78 136-235 9-86 (196)
325 PRK08673 3-deoxy-7-phosphohept 94.8 1.1 2.3E-05 43.9 14.9 110 111-237 182-298 (335)
326 cd01573 modD_like ModD; Quinol 94.8 0.22 4.9E-06 47.3 10.0 60 164-239 201-261 (272)
327 PRK09517 multifunctional thiam 94.8 0.12 2.7E-06 56.1 9.2 75 165-245 127-203 (755)
328 PRK08385 nicotinate-nucleotide 94.8 0.27 5.9E-06 46.8 10.4 67 164-245 200-268 (278)
329 COG0800 Eda 2-keto-3-deoxy-6-p 94.8 1.3 2.8E-05 40.3 14.1 39 64-102 12-50 (211)
330 PRK12738 kbaY tagatose-bisphos 94.8 1.5 3.2E-05 42.0 15.3 150 64-241 74-237 (286)
331 cd04739 DHOD_like Dihydroorota 94.8 1.4 3.1E-05 42.9 15.6 106 120-235 85-194 (325)
332 cd03324 rTSbeta_L-fuconate_deh 94.7 1.3 2.8E-05 44.7 15.7 125 73-235 194-323 (415)
333 cd04729 NanE N-acetylmannosami 94.7 1.5 3.1E-05 40.1 14.8 131 64-235 10-149 (219)
334 PLN02274 inosine-5'-monophosph 94.6 0.092 2E-06 54.3 7.3 61 163-236 257-317 (505)
335 TIGR01182 eda Entner-Doudoroff 94.6 0.34 7.5E-06 44.0 10.1 67 151-234 19-85 (204)
336 PF01729 QRPTase_C: Quinolinat 94.6 0.28 6.2E-06 43.1 9.2 97 122-245 66-164 (169)
337 PRK14017 galactonate dehydrata 94.4 1.9 4.1E-05 42.9 16.0 140 66-235 115-257 (382)
338 cd08210 RLP_RrRLP Ribulose bis 94.4 2.1 4.5E-05 42.5 16.0 193 15-245 135-352 (364)
339 cd02810 DHOD_DHPD_FMN Dihydroo 94.4 2 4.2E-05 40.9 15.4 109 119-236 82-196 (289)
340 PF13714 PEP_mutase: Phosphoen 94.4 0.19 4.2E-06 46.7 8.1 87 81-175 20-107 (238)
341 PRK13397 3-deoxy-7-phosphohept 94.3 2.1 4.6E-05 40.1 14.9 109 112-237 105-220 (250)
342 cd03326 MR_like_1 Mandelate ra 94.3 1.8 4E-05 43.2 15.5 123 75-235 160-289 (385)
343 KOG3111 D-ribulose-5-phosphate 94.3 0.64 1.4E-05 41.4 10.6 158 65-244 5-205 (224)
344 PRK05567 inosine 5'-monophosph 94.2 0.14 3.1E-06 52.7 7.6 62 162-236 236-297 (486)
345 PRK13396 3-deoxy-7-phosphohept 94.2 1.3 2.8E-05 43.5 13.8 108 112-236 191-306 (352)
346 PF02548 Pantoate_transf: Keto 94.2 0.75 1.6E-05 43.2 11.5 141 68-235 18-181 (261)
347 PRK12595 bifunctional 3-deoxy- 94.1 2.1 4.5E-05 42.4 15.1 115 112-245 208-329 (360)
348 PRK13398 3-deoxy-7-phosphohept 94.1 0.89 1.9E-05 43.1 12.1 109 112-237 117-232 (266)
349 PRK07084 fructose-bisphosphate 94.0 2.7 5.9E-05 40.8 15.4 110 116-231 122-242 (321)
350 COG0135 TrpF Phosphoribosylant 93.9 4.9 0.00011 36.6 16.2 181 17-245 7-192 (208)
351 PRK12857 fructose-1,6-bisphosp 93.9 6.1 0.00013 37.8 17.9 149 64-242 74-238 (284)
352 PRK07896 nicotinate-nucleotide 93.9 0.72 1.6E-05 44.1 11.2 67 164-245 217-283 (289)
353 PRK06552 keto-hydroxyglutarate 93.9 0.8 1.7E-05 41.9 11.1 68 151-234 24-93 (213)
354 PRK06015 keto-hydroxyglutarate 93.9 0.57 1.2E-05 42.4 9.9 61 159-235 22-82 (201)
355 PLN02898 HMP-P kinase/thiamin- 93.9 0.29 6.4E-06 50.6 9.2 74 163-244 407-483 (502)
356 TIGR01334 modD putative molybd 93.9 0.6 1.3E-05 44.4 10.5 96 121-243 174-270 (277)
357 PRK05835 fructose-bisphosphate 93.8 2.7 5.9E-05 40.5 15.0 132 65-224 75-221 (307)
358 cd00954 NAL N-Acetylneuraminic 93.8 6.5 0.00014 37.5 21.2 156 61-256 67-225 (288)
359 PF01116 F_bP_aldolase: Fructo 93.7 1.3 2.7E-05 42.5 12.5 152 64-242 73-241 (287)
360 cd04722 TIM_phosphate_binding 93.6 1.7 3.7E-05 37.7 12.6 134 77-238 12-145 (200)
361 cd03328 MR_like_3 Mandelate ra 93.6 1.8 3.8E-05 42.7 13.8 123 75-235 138-264 (352)
362 PRK15452 putative protease; Pr 93.6 3.4 7.5E-05 42.0 16.0 128 82-239 15-144 (443)
363 cd00952 CHBPH_aldolase Trans-o 93.6 1.2 2.6E-05 43.1 12.4 126 75-226 27-160 (309)
364 PRK05718 keto-hydroxyglutarate 93.4 1.1 2.3E-05 41.0 10.9 68 151-235 26-93 (212)
365 cd02809 alpha_hydroxyacid_oxid 93.3 1 2.3E-05 43.2 11.4 84 135-235 116-199 (299)
366 PRK13306 ulaD 3-keto-L-gulonat 93.3 0.62 1.3E-05 42.7 9.3 144 63-244 55-199 (216)
367 TIGR01521 FruBisAldo_II_B fruc 93.3 3 6.5E-05 40.9 14.4 158 65-239 74-278 (347)
368 TIGR02534 mucon_cyclo muconate 93.2 3.3 7.2E-05 40.9 15.1 134 66-235 132-267 (368)
369 cd00945 Aldolase_Class_I Class 93.1 1.3 2.9E-05 38.9 11.1 133 75-238 11-151 (201)
370 PRK13399 fructose-1,6-bisphosp 93.1 4.1 8.9E-05 40.0 15.1 141 65-222 76-241 (347)
371 TIGR01928 menC_lowGC/arch o-su 93.1 2.2 4.8E-05 41.5 13.4 124 71-235 128-252 (324)
372 cd03317 NAAAR N-acylamino acid 93.0 3.1 6.7E-05 40.8 14.5 119 76-235 138-257 (354)
373 cd03322 rpsA The starvation se 92.9 4.1 8.8E-05 40.3 15.2 119 71-235 122-243 (361)
374 cd00739 DHPS DHPS subgroup of 92.9 0.93 2E-05 42.7 10.1 60 75-139 22-81 (257)
375 PRK06106 nicotinate-nucleotide 92.9 1.3 2.7E-05 42.3 11.0 62 164-244 212-274 (281)
376 cd03318 MLE Muconate Lactonizi 92.9 3.9 8.4E-05 40.3 15.1 129 71-235 138-268 (365)
377 PRK09140 2-dehydro-3-deoxy-6-p 92.9 1.1 2.3E-05 40.8 10.2 81 136-237 11-91 (206)
378 cd03327 MR_like_2 Mandelate ra 92.9 3.2 6.9E-05 40.6 14.3 131 73-235 118-251 (341)
379 PRK07114 keto-hydroxyglutarate 92.9 1.5 3.2E-05 40.4 11.1 67 152-235 27-97 (222)
380 cd02922 FCB2_FMN Flavocytochro 92.8 1.5 3.3E-05 43.1 11.8 42 193-236 200-241 (344)
381 PRK01130 N-acetylmannosamine-6 92.8 3.3 7.3E-05 37.7 13.5 129 67-236 9-146 (221)
382 PRK14040 oxaloacetate decarbox 92.6 12 0.00026 39.6 18.8 241 70-346 87-340 (593)
383 PRK06559 nicotinate-nucleotide 92.6 1.4 3E-05 42.1 10.9 63 164-245 215-278 (290)
384 PRK00278 trpC indole-3-glycero 92.5 0.6 1.3E-05 44.0 8.3 73 159-244 76-148 (260)
385 cd04725 OMP_decarboxylase_like 92.5 3.9 8.5E-05 37.3 13.5 142 64-244 49-208 (216)
386 cd00956 Transaldolase_FSA Tran 92.5 1.9 4.1E-05 39.4 11.2 132 64-238 51-187 (211)
387 COG0800 Eda 2-keto-3-deoxy-6-p 92.4 1.3 2.8E-05 40.3 9.8 67 151-234 24-90 (211)
388 PRK07107 inosine 5-monophospha 92.4 0.33 7.2E-06 50.1 6.9 66 161-238 249-314 (502)
389 cd04743 NPD_PKS 2-Nitropropane 92.4 1.8 3.9E-05 42.0 11.5 91 118-235 38-129 (320)
390 PRK06256 biotin synthase; Vali 92.4 2.3 4.9E-05 41.5 12.5 147 81-238 153-302 (336)
391 TIGR03569 NeuB_NnaB N-acetylne 92.2 7.7 0.00017 37.9 15.6 131 75-231 74-218 (329)
392 PRK06543 nicotinate-nucleotide 92.0 1.8 4E-05 41.2 10.9 63 164-245 211-274 (281)
393 cd00954 NAL N-Acetylneuraminic 92.0 4.2 9.1E-05 38.8 13.6 127 75-227 19-154 (288)
394 PRK06978 nicotinate-nucleotide 92.0 1.8 3.8E-05 41.5 10.8 63 164-245 223-286 (294)
395 PF00218 IGPS: Indole-3-glycer 92.0 0.43 9.3E-06 44.8 6.6 73 159-244 74-146 (254)
396 PRK09016 quinolinate phosphori 92.0 1.6 3.4E-05 42.0 10.4 63 164-245 226-289 (296)
397 TIGR02151 IPP_isom_2 isopenten 92.0 1.7 3.8E-05 42.4 11.1 117 113-237 92-211 (333)
398 COG0149 TpiA Triosephosphate i 92.0 3.5 7.6E-05 38.5 12.4 153 82-250 80-244 (251)
399 PRK15072 bifunctional D-altron 91.9 7.1 0.00015 39.2 15.7 142 72-235 124-286 (404)
400 cd02811 IDI-2_FMN Isopentenyl- 91.9 2.3 5E-05 41.4 11.8 114 115-236 93-209 (326)
401 cd00950 DHDPS Dihydrodipicolin 91.9 3.5 7.7E-05 39.1 12.9 126 75-227 19-152 (284)
402 TIGR00683 nanA N-acetylneurami 91.9 4.5 9.8E-05 38.7 13.6 127 75-227 19-154 (290)
403 TIGR03128 RuMP_HxlA 3-hexulose 91.8 5.5 0.00012 35.7 13.6 126 69-237 4-134 (206)
404 cd03320 OSBS o-Succinylbenzoat 91.8 5.5 0.00012 37.4 14.0 129 66-235 74-205 (263)
405 PLN02334 ribulose-phosphate 3- 91.8 8.1 0.00018 35.5 14.8 136 66-237 9-147 (229)
406 PRK11572 copper homeostasis pr 91.8 5.2 0.00011 37.4 13.3 126 76-235 72-197 (248)
407 cd00003 PNPsynthase Pyridoxine 91.7 1.6 3.5E-05 40.2 9.7 147 78-244 22-219 (234)
408 PRK03170 dihydrodipicolinate s 91.6 13 0.00027 35.5 22.7 157 61-256 67-224 (292)
409 PF03932 CutC: CutC family; I 91.6 3.1 6.8E-05 37.6 11.4 124 76-233 71-196 (201)
410 PRK05286 dihydroorotate dehydr 91.5 5.6 0.00012 39.1 14.1 158 76-239 68-248 (344)
411 PRK05265 pyridoxine 5'-phospha 91.4 2.1 4.5E-05 39.6 10.2 146 78-244 25-221 (239)
412 TIGR01037 pyrD_sub1_fam dihydr 91.4 10 0.00022 36.3 15.5 110 119-236 75-189 (300)
413 PF00697 PRAI: N-(5'phosphorib 91.2 1.2 2.5E-05 40.2 8.3 181 17-245 4-185 (197)
414 COG0329 DapA Dihydrodipicolina 91.1 4.5 9.7E-05 39.0 12.7 111 75-212 23-135 (299)
415 TIGR00683 nanA N-acetylneurami 90.9 15 0.00033 35.0 22.2 156 61-256 67-224 (290)
416 TIGR03151 enACPred_II putative 90.9 2.4 5.3E-05 40.9 10.7 90 118-235 46-135 (307)
417 cd03323 D-glucarate_dehydratas 90.9 5.1 0.00011 40.1 13.4 120 75-235 168-290 (395)
418 TIGR03586 PseI pseudaminic aci 90.8 13 0.00029 36.2 15.7 130 76-231 76-217 (327)
419 PRK13958 N-(5'-phosphoribosyl) 90.8 13 0.00027 33.8 15.9 175 17-240 6-186 (207)
420 PRK02412 aroD 3-dehydroquinate 90.7 14 0.00031 34.5 17.7 97 65-174 16-117 (253)
421 PRK06096 molybdenum transport 90.7 3.1 6.6E-05 39.8 10.9 92 122-245 176-272 (284)
422 PRK02714 O-succinylbenzoate sy 90.6 8.6 0.00019 37.3 14.4 123 75-235 118-246 (320)
423 cd08208 RLP_Photo Ribulose bis 90.6 21 0.00045 36.1 17.2 192 15-246 169-388 (424)
424 cd00950 DHDPS Dihydrodipicolin 90.6 16 0.00034 34.6 21.8 156 61-256 66-223 (284)
425 PRK03170 dihydrodipicolinate s 90.5 6.8 0.00015 37.3 13.5 126 75-227 20-153 (292)
426 PRK01060 endonuclease IV; Prov 90.5 8.5 0.00018 36.2 14.0 88 79-176 14-112 (281)
427 TIGR00674 dapA dihydrodipicoli 90.5 6 0.00013 37.6 12.9 126 75-227 17-150 (285)
428 PRK11572 copper homeostasis pr 90.4 6.4 0.00014 36.8 12.6 77 82-173 13-93 (248)
429 cd00452 KDPG_aldolase KDPG and 90.4 2.8 6.1E-05 37.4 10.0 69 151-236 15-83 (190)
430 TIGR01036 pyrD_sub2 dihydrooro 90.4 5.9 0.00013 38.8 13.0 165 64-239 56-247 (335)
431 COG0413 PanB Ketopantoate hydr 90.2 10 0.00023 35.5 13.6 99 76-215 93-204 (268)
432 TIGR03849 arch_ComA phosphosul 90.2 7.7 0.00017 36.0 12.8 83 77-177 71-158 (237)
433 PF04309 G3P_antiterm: Glycero 90.2 0.18 3.8E-06 44.6 2.0 61 162-240 113-173 (175)
434 TIGR00674 dapA dihydrodipicoli 90.2 17 0.00037 34.5 20.6 154 61-256 64-221 (285)
435 cd08210 RLP_RrRLP Ribulose bis 90.1 15 0.00032 36.5 15.6 141 63-236 124-284 (364)
436 PLN02389 biotin synthase 90.1 11 0.00024 37.6 14.8 146 80-238 178-331 (379)
437 COG0284 PyrF Orotidine-5'-phos 90.0 14 0.0003 34.4 14.5 35 64-98 62-97 (240)
438 TIGR00559 pdxJ pyridoxine 5'-p 90.0 3.1 6.6E-05 38.5 9.9 147 78-244 22-220 (237)
439 COG2876 AroA 3-deoxy-D-arabino 89.8 4 8.7E-05 38.3 10.6 117 112-246 135-257 (286)
440 TIGR00433 bioB biotin syntheta 89.7 13 0.00028 35.3 14.6 144 80-236 123-273 (296)
441 COG4981 Enoyl reductase domain 89.7 15 0.00032 38.1 15.1 202 6-243 32-260 (717)
442 TIGR03332 salvage_mtnW 2,3-dik 89.6 11 0.00024 37.9 14.3 199 15-246 148-369 (407)
443 cd08213 RuBisCO_large_III Ribu 89.6 11 0.00023 38.1 14.3 196 15-246 140-375 (412)
444 cd04726 KGPDC_HPS 3-Keto-L-gul 89.5 9.5 0.0002 33.9 12.8 123 73-236 9-133 (202)
445 PRK01261 aroD 3-dehydroquinate 89.5 17 0.00037 33.6 15.1 131 63-237 19-153 (229)
446 PF03932 CutC: CutC family; I 89.5 12 0.00026 33.8 13.3 127 82-235 12-146 (201)
447 PLN02535 glycolate oxidase 89.5 5 0.00011 39.8 11.7 44 191-236 208-251 (364)
448 cd08209 RLP_DK-MTP-1-P-enolase 89.4 20 0.00044 35.9 16.0 197 15-246 133-353 (391)
449 cd04733 OYE_like_2_FMN Old yel 89.4 5.4 0.00012 39.0 12.0 100 63-172 215-321 (338)
450 COG5016 Pyruvate/oxaloacetate 89.4 25 0.00054 35.2 17.7 128 79-236 100-231 (472)
451 PF00809 Pterin_bind: Pterin b 89.2 2.1 4.6E-05 38.9 8.4 60 76-140 18-78 (210)
452 cd08207 RLP_NonPhot Ribulose b 89.2 20 0.00043 36.1 15.8 196 15-246 152-372 (406)
453 PLN02460 indole-3-glycerol-pho 89.1 1.1 2.3E-05 43.8 6.6 76 158-245 144-219 (338)
454 PRK07094 biotin synthase; Prov 89.0 6.3 0.00014 38.1 12.0 139 81-235 130-279 (323)
455 cd04741 DHOD_1A_like Dihydroor 89.0 14 0.00031 35.3 14.3 147 78-236 21-193 (294)
456 PRK09549 mtnW 2,3-diketo-5-met 89.0 23 0.00049 35.7 16.0 197 15-246 143-364 (407)
457 COG0157 NadC Nicotinate-nucleo 89.0 1.3 2.9E-05 41.8 6.9 112 107-245 154-271 (280)
458 PRK11613 folP dihydropteroate 88.7 2 4.4E-05 41.0 8.1 61 75-140 36-96 (282)
459 PRK01222 N-(5'-phosphoribosyl) 88.5 14 0.0003 33.6 13.2 125 68-236 4-131 (210)
460 cd08148 RuBisCO_large Ribulose 88.5 19 0.00041 35.7 15.0 198 15-246 136-356 (366)
461 cd08207 RLP_NonPhot Ribulose b 88.4 12 0.00025 37.8 13.5 144 63-238 141-303 (406)
462 PRK07455 keto-hydroxyglutarate 88.3 6.2 0.00014 35.2 10.6 89 124-237 4-92 (187)
463 cd08205 RuBisCO_IV_RLP Ribulos 88.2 16 0.00034 36.4 14.3 200 10-246 131-357 (367)
464 PLN02716 nicotinate-nucleotide 88.1 2.7 5.8E-05 40.6 8.5 71 165-245 228-299 (308)
465 COG1411 Uncharacterized protei 88.1 5.3 0.00011 36.0 9.6 46 195-241 170-215 (229)
466 cd00951 KDGDH 5-dehydro-4-deox 88.0 25 0.00054 33.5 23.4 156 61-256 66-223 (289)
467 PRK03620 5-dehydro-4-deoxygluc 87.9 26 0.00057 33.6 21.9 156 61-256 73-230 (303)
468 PF01487 DHquinase_I: Type I 3 87.8 7.9 0.00017 35.3 11.3 93 69-175 2-97 (224)
469 cd08205 RuBisCO_IV_RLP Ribulos 87.8 19 0.00041 35.8 14.6 144 63-237 128-289 (367)
470 COG1954 GlpP Glycerol-3-phosph 87.8 2.3 4.9E-05 37.3 7.0 54 163-234 118-171 (181)
471 PLN02495 oxidoreductase, actin 87.7 5.3 0.00012 39.9 10.7 111 119-239 97-217 (385)
472 PRK10550 tRNA-dihydrouridine s 87.7 6.5 0.00014 38.1 11.1 90 64-173 133-224 (312)
473 PTZ00333 triosephosphate isome 87.7 21 0.00045 33.6 14.1 41 207-250 207-248 (255)
474 TIGR02313 HpaI-NOT-DapA 2,4-di 87.7 2.8 6.1E-05 40.2 8.5 90 146-243 15-109 (294)
475 PF02548 Pantoate_transf: Keto 87.5 6.4 0.00014 37.1 10.4 156 18-215 22-205 (261)
476 TIGR03326 rubisco_III ribulose 87.5 20 0.00044 36.1 14.6 145 63-238 142-307 (412)
477 TIGR03249 KdgD 5-dehydro-4-deo 87.4 11 0.00023 36.2 12.3 125 75-227 24-153 (296)
478 cd00423 Pterin_binding Pterin 87.3 1.6 3.5E-05 41.0 6.5 61 74-139 21-81 (258)
479 cd04738 DHOD_2_like Dihydrooro 87.3 6.2 0.00013 38.5 10.7 154 76-235 58-235 (327)
480 TIGR03249 KdgD 5-dehydro-4-deo 87.2 28 0.00061 33.2 22.5 156 60-256 70-228 (296)
481 TIGR00284 dihydropteroate synt 87.2 3.6 7.8E-05 42.5 9.3 50 77-140 165-214 (499)
482 KOG4201 Anthranilate synthase 87.2 5.1 0.00011 36.5 9.1 38 207-244 237-274 (289)
483 TIGR01740 pyrF orotidine 5'-ph 87.2 17 0.00036 33.0 12.9 142 65-245 50-205 (213)
484 cd00405 PRAI Phosphoribosylant 87.2 22 0.00047 31.9 14.0 122 70-235 2-126 (203)
485 cd08209 RLP_DK-MTP-1-P-enolase 87.1 15 0.00033 36.7 13.4 146 63-238 122-287 (391)
486 cd04736 MDH_FMN Mandelate dehy 87.0 1.4 2.9E-05 43.7 5.9 43 192-236 222-264 (361)
487 PRK04452 acetyl-CoA decarbonyl 86.9 11 0.00023 36.7 11.9 52 82-142 80-132 (319)
488 cd08206 RuBisCO_large_I_II_III 86.8 34 0.00073 34.6 15.8 197 15-246 141-377 (414)
489 PLN02561 triosephosphate isome 86.8 15 0.00032 34.5 12.5 43 207-251 204-246 (253)
490 PRK12656 fructose-6-phosphate 86.7 11 0.00023 34.7 11.3 144 57-239 47-192 (222)
491 cd03174 DRE_TIM_metallolyase D 86.7 17 0.00038 33.6 13.2 78 75-174 17-95 (265)
492 cd08212 RuBisCO_large_I Ribulo 86.6 22 0.00048 36.2 14.5 196 15-246 154-390 (450)
493 COG0134 TrpC Indole-3-glycerol 86.5 1.6 3.5E-05 40.8 5.8 74 158-244 71-144 (254)
494 TIGR03586 PseI pseudaminic aci 86.5 15 0.00032 35.9 12.8 132 75-235 15-166 (327)
495 CHL00040 rbcL ribulose-1,5-bis 86.4 19 0.0004 37.0 13.9 198 15-244 176-411 (475)
496 TIGR03247 glucar-dehydr glucar 86.4 21 0.00045 36.4 14.3 122 75-235 180-308 (441)
497 TIGR01927 menC_gamma/gm+ o-suc 86.3 28 0.0006 33.6 14.6 128 68-235 104-235 (307)
498 cd00951 KDGDH 5-dehydro-4-deox 86.2 3.7 8E-05 39.2 8.4 84 151-243 20-108 (289)
499 PRK07535 methyltetrahydrofolat 86.1 2.1 4.5E-05 40.4 6.5 54 74-140 22-75 (261)
500 PRK12457 2-dehydro-3-deoxyphos 86.1 13 0.00028 35.3 11.6 107 112-235 113-236 (281)
No 1
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=4.1e-65 Score=490.08 Aligned_cols=318 Identities=42% Similarity=0.758 Sum_probs=274.9
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHH
Q 017148 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANA 88 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~ 88 (376)
+++++|||+|+||.+||.+|+.+|+.+++||||++++++.+...+ .++..++.+.|+++||+|++|+.|++||+++++
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~ 78 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAEK 78 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHHh
Confidence 479999999999999999999998669999999999999876544 577788999999999999999999999999999
Q ss_pred CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc
Q 017148 89 YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR 168 (376)
Q Consensus 89 ~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd 168 (376)
+|||+||||||||++++.+ ++||++|+++|+++.+||+++++++++||+||+|+||++.+++++++++ .+.++++|++
T Consensus 79 ~g~d~IDlN~GCP~~~v~~-~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~-~~~l~~~G~~ 156 (318)
T TIGR00742 79 RGYDEINLNVGCPSDRVQN-GNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDF-VEIVSGKGCQ 156 (318)
T ss_pred CCCCEEEEECCCCHHHhCC-CCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHH-HHHHHHcCCC
Confidence 9999999999999998764 6689999999999999999999999999999999999876556666654 4566789999
Q ss_pred EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhH
Q 017148 169 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 169 ~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~ 248 (376)
+|+||+||...+|+++..++.+++.+|+.++++++.++++|||+||||.|++|+.+++. |||+||||||++.|||+| .
T Consensus 157 ~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if-~ 234 (318)
T TIGR00742 157 NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLL-A 234 (318)
T ss_pred EEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHH-H
Confidence 99999999755677766666778888999999988877899999999999999999996 899999999999999997 5
Q ss_pred hhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhhhhhHHHHHH
Q 017148 249 HVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 328 (376)
Q Consensus 249 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 328 (376)
+++..+.+.+.+..++.++++.|.+|.+.+.++ ..+++.+|||+.||++|+|++++||+++++...+..+..++|+
T Consensus 235 ~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~rk~~~~y~~g~~~~~~~r~~~~~~~~~~~~~~~~~~ 310 (318)
T TIGR00742 235 NVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ----GLSLNHITRHLLGLFQGKPGAKQWRRYLSENAPKAGAGIEVLE 310 (318)
T ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHccCCCHHHHHHHHHhcccCCCCcHHHHH
Confidence 566555543333467778888888888765443 3578999999999999999999999999876655567889999
Q ss_pred HHHHhCCC
Q 017148 329 ETIVAIPD 336 (376)
Q Consensus 329 ~~~~~~~~ 336 (376)
+++..+++
T Consensus 311 ~~~~~~~~ 318 (318)
T TIGR00742 311 TALETVPE 318 (318)
T ss_pred HHHHhccC
Confidence 98877653
No 2
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-63 Score=480.23 Aligned_cols=313 Identities=29% Similarity=0.481 Sum_probs=266.3
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
++.+.+++++++|||+|+||.+||++++++|+.+++||||+++++++++.++....+...+.+.|+++||+|++|+.+++
T Consensus 4 ~~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~e 83 (323)
T COG0042 4 IGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAE 83 (323)
T ss_pred cccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHH
Confidence 56788999999999999999999999999984499999999999999987766665555577899999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
||+.+.+.|+|+||||||||++++++.+. |++||++|+++.+||++++++++ +|||||+|+||++.+. ....+++
T Consensus 84 aA~~~~~~g~~~IdlN~GCP~~~V~~~g~-Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~---~~~~ia~ 159 (323)
T COG0042 84 AAKIAEELGADIIDLNCGCPSPKVVKGGA-GAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI---LALEIAR 159 (323)
T ss_pred HHHHHHhcCCCEEeeeCCCChHHhcCCCc-chhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccc---cHHHHHH
Confidence 99999999999999999999999988765 99999999999999999999995 9999999999988541 1223567
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017148 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
+++++|+++|+|||||+.+.+.++ .+|++|+++++.++++|||+||||.|++|+.++++ +|||+||+|||+
T Consensus 160 ~~~~~g~~~ltVHgRtr~~~y~~~--------ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga 231 (323)
T COG0042 160 ILEDAGADALTVHGRTRAQGYLGP--------ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA 231 (323)
T ss_pred HHHhcCCCEEEEecccHHhcCCCc--------cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHH
Confidence 778999999999999987776543 45999999999875699999999999999999999 899999999999
Q ss_pred hhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhh
Q 017148 240 YQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT 319 (376)
Q Consensus 240 l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~ 319 (376)
+.|||+| ++++....|...+ .++.++++.+..|.+.+.++++ ..+++.+|||+.||+++++++++||+.+++ +.+
T Consensus 232 ~~nP~l~-~~i~~~~~g~~~~-~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~r~h~~~~~~~~~~a~~~r~~~~~-~~~ 306 (323)
T COG0042 232 LGNPWLF-RQIDYLETGELLP-PTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLGYYLKGLPGARELRRALNK-AED 306 (323)
T ss_pred ccCCcHH-HHHHHhhcCCCCC-CCHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhcCccHHHHHHHHhc-cCc
Confidence 9999997 4443333444322 6777888888888888888888 578999999999999999999999998633 244
Q ss_pred hhhHHHHHHHHH
Q 017148 320 CKTVKSFLEETI 331 (376)
Q Consensus 320 ~~~~~~~~~~~~ 331 (376)
..++.+.++.+.
T Consensus 307 ~~~~~~~l~~~~ 318 (323)
T COG0042 307 GAEVRRALEAVF 318 (323)
T ss_pred HHHHHHHHHHHH
Confidence 444445444433
No 3
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=3.9e-62 Score=473.83 Aligned_cols=324 Identities=43% Similarity=0.793 Sum_probs=281.3
Q ss_pred ecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHH
Q 017148 6 YLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATEL 85 (376)
Q Consensus 6 ~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~ 85 (376)
..+++++||||+|+||.+||.+|+.+|+.+++||||++++++.+.. ...++..++.+.|+++||+|++|+.|++||++
T Consensus 8 ~~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~ 85 (333)
T PRK11815 8 LPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAEAAKL 85 (333)
T ss_pred CCCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHHHHHH
Confidence 4567999999999999999999999987799999999999998865 46677788899999999999999999999999
Q ss_pred HHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcC
Q 017148 86 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 86 ~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~ 165 (376)
++++|||+||||+|||++++ ++++||++|++||+++.+|++++++.+++||+||+|+|+++..+.+++.++ .+.++++
T Consensus 86 ~~~~g~d~IdlN~gCP~~~v-~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~-~~~l~~a 163 (333)
T PRK11815 86 AEDWGYDEINLNVGCPSDRV-QNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDF-VDTVAEA 163 (333)
T ss_pred HHhcCCCEEEEcCCCCHHHc-cCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHH-HHHHHHh
Confidence 99999999999999999875 567899999999999999999999999999999999999876555566654 4456789
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 166 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+|+|+||+|+...+|.++..+..+++.+|+.++++++.++++|||+||||.|++|+.++++ +||+||||||++.|||+
T Consensus 164 G~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~ 242 (333)
T PRK11815 164 GCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYL 242 (333)
T ss_pred CCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHH
Confidence 99999999998755666666667788899999999888767899999999999999999998 69999999999999999
Q ss_pred hhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhh-hhhHH
Q 017148 246 TLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT-CKTVK 324 (376)
Q Consensus 246 f~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~-~~~~~ 324 (376)
| +++...+.|.+.+..++.++++.|.+|.+.+.+ +|+ +++.+|||+.||++++|++++||+++++...+ +.++
T Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~- 316 (333)
T PRK11815 243 L-AEVDRELFGEPAPPLSRSEVLEAMLPYIERHLA-QGG---RLNHITRHMLGLFQGLPGARAWRRYLSENAHKPGAGI- 316 (333)
T ss_pred H-HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH-cCc---hHHHHHHHHHHHHcCCCCHHHHHHHHHhhcccCCCCH-
Confidence 6 556655566554456788999999999988776 354 58999999999999999999999999776433 4566
Q ss_pred HHHHHHHHhCCCCCCC
Q 017148 325 SFLEETIVAIPDSVLD 340 (376)
Q Consensus 325 ~~~~~~~~~~~~~~~~ 340 (376)
++|++.+..+++..+.
T Consensus 317 ~~~~~~~~~~~~~~~~ 332 (333)
T PRK11815 317 EVLEEALALVEEAALE 332 (333)
T ss_pred HHHHHHHHhhhhhhcc
Confidence 9999999888876654
No 4
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=3.8e-61 Score=464.73 Aligned_cols=314 Identities=22% Similarity=0.303 Sum_probs=263.4
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
||++.+++++++|||+|+||.+||.+|+++| +++++|||++++++..........+...+++.|+++||+|++|+.|++
T Consensus 3 i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g-~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~ 81 (321)
T PRK10415 3 IGQYQLRNRLIAAPMAGITDRPFRTLCYEMG-AGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMAD 81 (321)
T ss_pred cCCccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHH
Confidence 7899999999999999999999999999997 699999999999876655444444444566789999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
+|+++++.|+|+||||||||++++.+.+. |++|+++|+++.++++++++.+++||++|+|.||++.. .+..+ +++.
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~-Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~--~~~~~-~a~~ 157 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLA-GSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH--RNCVE-IAQL 157 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCc-ccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCc--chHHH-HHHH
Confidence 99999999999999999999999888775 99999999999999999999999999999999998632 12233 2445
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHh
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 240 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l 240 (376)
++++|+|+|+||+|+......+ +.+|+.++++++.. ++|||+||||.|++|++++++ +|||+||+|||++
T Consensus 158 le~~G~d~i~vh~rt~~~~~~G--------~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l 228 (321)
T PRK10415 158 AEDCGIQALTIHGRTRACLFNG--------EAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQ 228 (321)
T ss_pred HHHhCCCEEEEecCccccccCC--------CcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence 6789999999999985322111 23488888988764 899999999999999999998 8999999999999
Q ss_pred hCCchhhHhhhhhh-hCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhh
Q 017148 241 QNPWYTLGHVDTAI-YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT 319 (376)
Q Consensus 241 ~~P~lf~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~ 319 (376)
.|||+| +++.... .|+..+..++.++++.+.+|.+.+.++||+ +.+++.+|||+.||++++|++++||+++++ +++
T Consensus 229 ~nP~if-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~~~~~~~~~r~~~~~-~~~ 305 (321)
T PRK10415 229 GRPWIF-REIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP-AKGYRIARKHVSWYLQEHAPNDQFRRTFNA-IED 305 (321)
T ss_pred cCChHH-HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHc-CCC
Confidence 999997 5555433 355444456778888888888888888887 679999999999999999999999998854 367
Q ss_pred hhhHHHHHHHHHH
Q 017148 320 CKTVKSFLEETIV 332 (376)
Q Consensus 320 ~~~~~~~~~~~~~ 332 (376)
..++.+++++++.
T Consensus 306 ~~~~~~~~~~~~~ 318 (321)
T PRK10415 306 ASEQLEALEAYFE 318 (321)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777654
No 5
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=5.1e-61 Score=460.87 Aligned_cols=297 Identities=21% Similarity=0.263 Sum_probs=240.3
Q ss_pred cEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhh---hhhc---cCCCCCCEEEEecCCCHHHHHHHH
Q 017148 10 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLD---RFLA---FSPEQHPIVLQIGGSNLDNLAKAT 83 (376)
Q Consensus 10 ri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~---~~~~---~~~~~~p~~vQL~g~~~~~~~~aa 83 (376)
+++||||+|+||.+||.+|+++||++++||||++++++....+.+. ..+. .++++.|+++||+|++|+.|++||
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 5899999999999999999999889999999999998877654442 2222 567789999999999999999999
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHHHHHHHHHHH
Q 017148 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
+++++.|||+||||||||++++++.|. |++|+++|+++.+|+++|++.+ ++||+||+|+||++.+...+ ++++
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~----~a~~ 156 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFE----IADA 156 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHH----HHHH
Confidence 999999999999999999999887765 9999999999999999999988 49999999999976443333 3556
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHh
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY 240 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l 240 (376)
++++|+|+|+||+|+..+ ++++ ++.+|+.++++++.. ++|||+||||.|++|+.++++ +|||+||||||++
T Consensus 157 l~~~Gvd~i~Vh~Rt~~~-~y~g------~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 157 VQQAGATELVVHGRTKED-GYRA------EHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHhcCCCEEEECCCCCcc-CCCC------CcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 788999999999999643 2221 233688999988764 899999999999999999998 9999999999999
Q ss_pred hCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhhh
Q 017148 241 QNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTC 320 (376)
Q Consensus 241 ~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~~ 320 (376)
+||||| ++++. |.+ .+++.++++.+.+|.+...+.+++ ..++.+||||+.||+++++++++||+++++. ++.
T Consensus 229 ~nP~lf-~~~~~---g~~--~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~~~~~~~~~r~~i~~~-~~~ 300 (312)
T PRK10550 229 NIPNLS-RVVKY---NEP--RMPWPEVVALLQKYTRLEKQGDTG-LYHVARIKQWLGYLRKEYDEATELFQEIRAL-NNS 300 (312)
T ss_pred hCcHHH-HHhhc---CCC--CCCHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHhcCCcHHHHHHHHHcC-CCH
Confidence 999997 45543 432 234556655555565543444443 5678999999999999999999999887432 444
Q ss_pred hhHHHHH
Q 017148 321 KTVKSFL 327 (376)
Q Consensus 321 ~~~~~~~ 327 (376)
.++.+++
T Consensus 301 ~e~~~~~ 307 (312)
T PRK10550 301 PDIARAI 307 (312)
T ss_pred HHHHHHH
Confidence 4444433
No 6
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=2.5e-60 Score=457.05 Aligned_cols=301 Identities=29% Similarity=0.482 Sum_probs=221.5
Q ss_pred EEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCC
Q 017148 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 91 (376)
Q Consensus 12 ~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~ 91 (376)
+||||+++||.+||.+++.+|+.+++||||++++.+.+..+.....+...+++.|+++||+|++|+.+++||+++.+.|+
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 58999999999999999999976699999999999998887778888888899999999999999999999999999999
Q ss_pred CEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEE
Q 017148 92 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 171 (376)
Q Consensus 92 d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~ 171 (376)
|+||||||||+++++++| +|++||++|+.+.+||+++++.+++||+||+|+||++. .+++.++ .+.++++|+++|+
T Consensus 81 ~~IDlN~GCP~~~v~~~g-~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~--~~~~~~~-~~~l~~~G~~~i~ 156 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGG-AGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDS--PEETIEF-ARILEDAGVSAIT 156 (309)
T ss_dssp SEEEEEE---SHHHHHCT--GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT----CHHHHHH-HHHHHHTT--EEE
T ss_pred cEEeccCCCCHHHHhcCC-cChhhhcChHHhhHHHHhhhcccccceEEecccccccc--hhHHHHH-HHHhhhcccceEE
Confidence 999999999999988766 59999999999999999999999999999999999843 2233443 3456789999999
Q ss_pred EccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhHhh
Q 017148 172 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 250 (376)
Q Consensus 172 vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~ 250 (376)
||+||..+.... +.+|+.++++++.+ ++|||+||||.|++|+.++++ +||||||||||++.|||+|.+ .
T Consensus 157 vH~Rt~~q~~~~--------~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~-~ 226 (309)
T PF01207_consen 157 VHGRTRKQRYKG--------PADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFRE-I 226 (309)
T ss_dssp EECS-TTCCCTS-----------HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCH-H
T ss_pred EecCchhhcCCc--------ccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhh-h
Confidence 999997654332 45699999998876 699999999999999999999 899999999999999999864 2
Q ss_pred hhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHhhhhhHHHHHH
Q 017148 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 328 (376)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 328 (376)
.....|......+..+.+..+.+|.+.+.+++++ ...++.++||+.||++++++++.||+.+++. ++..++.+.|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~y~~~~~~~~~~r~~l~~~-~~~~e~~~~l~ 302 (309)
T PF01207_consen 227 DQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGE-EKALRQMRKHLKWYFKGFPGARKFRRELNKC-KTLEEFLELLE 302 (309)
T ss_dssp HCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHC-CHHHHHHHTTCCCCTTTSTTHHHHHHHHCCH--SHHHHHHHH-
T ss_pred hhhccCCCCCCCchhHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHccCCcHHHHHHHHHhh-CCHHHHhhhhc
Confidence 2222332222222445556666666677778876 6789999999999999999999999887443 44445555554
No 7
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=3.8e-57 Score=437.78 Aligned_cols=313 Identities=25% Similarity=0.436 Sum_probs=260.9
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
||++.+++|+++|||+++||.+||.+|+++| +++++|||++++.+.+..++...++..++.+.|+++||+|++|+++++
T Consensus 1 ~~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~ 79 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDSPFRRLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAE 79 (319)
T ss_pred CCCccCCCCEEecCCCCCCcHHHHHHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHH
Confidence 5889999999999999999999999999998 899999999999988777666777778889999999999999999999
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCc-cHHHHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD-SYNQLCDFIYK 160 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~-~~~~~~~~i~~ 160 (376)
+|++++++|||+||||+|||+.++++.+. |+.++++|+++.+|+++|++.+++||+||+|+||++.. +..++ ++
T Consensus 80 aa~~~~~~G~d~IelN~gcP~~~~~~~~~-Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~----a~ 154 (319)
T TIGR00737 80 AAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEA----AR 154 (319)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHhcCCCc-cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHH----HH
Confidence 99999999999999999999876655443 66789999999999999999999999999999997632 23332 44
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017148 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
.++++|+|+|+||+|+... +.+ .+..|+.++++++.. ++|||+||||.|++|++++++ +|||+||+||++
T Consensus 155 ~l~~~G~d~i~vh~r~~~~-~~~-------~~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 155 IAEDAGAQAVTLHGRTRAQ-GYS-------GEANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred HHHHhCCCEEEEEcccccc-cCC-------CchhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhh
Confidence 5678999999999997532 221 133588888888765 799999999999999999996 899999999999
Q ss_pred hhCCchhhHhhhhhhh-CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCChHHHHHHHHHHh
Q 017148 240 YQNPWYTLGHVDTAIY-GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQ 318 (376)
Q Consensus 240 l~~P~lf~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~~~~~~~ 318 (376)
+.||||| +++..... +...+..+..+.++.+.+|.+.+.++||+ ..++..+|||+.+|+++++++++||+++.+. +
T Consensus 226 l~~P~l~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~-~ 302 (319)
T TIGR00737 226 LGNPWLF-RQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGE-SKGLRIARKHIAWYLKGFPGNAALRQTLNHA-S 302 (319)
T ss_pred hhCChHH-HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhcCCcHHHHHHHHHcC-C
Confidence 9999996 45544333 33233345667777777787777888886 6789999999999999999999999988543 6
Q ss_pred hhhhHHHHHHHHHH
Q 017148 319 TCKTVKSFLEETIV 332 (376)
Q Consensus 319 ~~~~~~~~~~~~~~ 332 (376)
+..++.+++++++.
T Consensus 303 ~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 303 SFQEVKQLLDDFFE 316 (319)
T ss_pred CHHHHHHHHHHHHh
Confidence 67777777776654
No 8
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-55 Score=415.94 Aligned_cols=326 Identities=35% Similarity=0.512 Sum_probs=260.6
Q ss_pred EEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCC
Q 017148 12 SVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNY 91 (376)
Q Consensus 12 ~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~ 91 (376)
++|||+++|+.+||.++|.+| +.++||||+.++.+++..+.....+++.++++|+++|++|+||+.+.+||++++.++
T Consensus 22 i~APMvd~S~l~fR~L~R~y~-~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~- 99 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLYG-ADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC- 99 (358)
T ss_pred ccCCcccccHHHHHHHHHHhC-CceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhhhc-
Confidence 899999999999999999995 999999999999999887777778889999999999999999999999999999997
Q ss_pred CEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEE
Q 017148 92 DEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI 171 (376)
Q Consensus 92 d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~ 171 (376)
|+||||||||+ ++.++|+||+.|+.+++++.++|+++++.++.||++|||++.|.. +++++ ++.++++|++.++
T Consensus 100 D~idlNcGCPq-~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~----kTvd~-ak~~e~aG~~~lt 173 (358)
T KOG2335|consen 100 DGIDLNCGCPQ-KVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLE----KTVDY-AKMLEDAGVSLLT 173 (358)
T ss_pred CcccccCCCCH-HHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHH----HHHHH-HHHHHhCCCcEEE
Confidence 99999999996 578899999999999999999999999999999999999985543 33443 4567899999999
Q ss_pred EccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhHhh
Q 017148 172 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 250 (376)
Q Consensus 172 vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~ 250 (376)
|||||+.++|. ..+|++|+.++.+++.+++||||+||+|.+.+|+.++++ +||||||+|||+|.|||+|..
T Consensus 174 VHGRtr~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~-- 245 (358)
T KOG2335|consen 174 VHGRTREQKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT-- 245 (358)
T ss_pred EecccHHhcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhcc--
Confidence 99999988874 246778999999999987799999999999999999999 999999999999999999843
Q ss_pred hhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHhhhhhHHHHHHH
Q 017148 251 DTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG-LFKRKADAAFQTCKTVKSFLEE 329 (376)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~ 329 (376)
..++ .+..+++++|++++ .+++|.. -...++-|+...++.+-... .+|+.+ .+.+.+.++.+|+++
T Consensus 246 --~~~~-----~~~~~~~~~~l~~~---~e~~g~~--~~~~~~~Hl~~m~~~~~~~~~~~r~~~-~~~~~~~~~~~~l~~ 312 (358)
T KOG2335|consen 246 --AGYG-----PTPWGCVEEYLDIA---REFGGLS--SFSLIRHHLFKMLRPLLSIHQDLRRDL-AALNSCESVIDFLEE 312 (358)
T ss_pred --CCCC-----CCHHHHHHHHHHHH---HHcCCCc--hhhHHHHHHHHHHHHHHhhhHHHHHHH-hhccchhhHHHHHHH
Confidence 1111 23467888887765 3444442 23444555554444433333 355555 445778899999997
Q ss_pred HHHhCCCCCCCCCCcCCC-------CCccccccccCCCCCCCCc
Q 017148 330 TIVAIPDSVLDSPIEEAP-------RGREDLFADVHDLLPPPYK 366 (376)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 366 (376)
....+...+.+.+..... .|.+.-+++..+.+||.++
T Consensus 313 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 356 (358)
T KOG2335|consen 313 LVLMVRKRVEDGFGRGVEEITKFITPGPEDSLAAEYRVLPPWRS 356 (358)
T ss_pred HHHHHHhhhccccccCccccccccCCchhhhcccccccCCCccc
Confidence 777776666555443331 2555555555666666543
No 9
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=6.4e-46 Score=357.22 Aligned_cols=278 Identities=21% Similarity=0.303 Sum_probs=239.3
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHH
Q 017148 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 5 ~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~ 84 (376)
+.+..+.+|||++++++.+||++|+.+| ++.++.||..+..++.+...-+.+++.|..+.-++|||.|+.|+.+.++|+
T Consensus 261 lD~r~K~~LaPLTTvGNLPFRRlCk~lG-ADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~kaaq 339 (614)
T KOG2333|consen 261 LDFRDKKYLAPLTTVGNLPFRRLCKKLG-ADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAKAAQ 339 (614)
T ss_pred cccccceeeccccccCCccHHHHHHHhC-CccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHHHHH
Confidence 5577889999999999999999999997 899999999999999988888888888888889999999999999999999
Q ss_pred HHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCcc-HHHHHHHHHHH
Q 017148 85 LANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDS-YNQLCDFIYKV 161 (376)
Q Consensus 85 ~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~-~~~~~~~i~~~ 161 (376)
.+.+ ..+|+||||+|||.+-+.++|+ |++||++|..+.++|+++...++ +|+|||||.|..+... ..++ |..+
T Consensus 340 ~i~e~~~VDFIDlN~GCPIDlvy~qG~-GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~L---i~~i 415 (614)
T KOG2333|consen 340 VIAETCDVDFIDLNMGCPIDLVYRQGG-GSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHEL---IPRI 415 (614)
T ss_pred HHHhhcceeeeeccCCCChheeeccCC-cchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHH---HHHH
Confidence 7754 6689999999999999999998 99999999999999999988875 5999999999877544 3333 4455
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCHHHHHHHHH-cC-cCeeEEchH
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR-KG-AHHVMVGRA 238 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~~da~~~l~-~G-ad~VmiGRa 238 (376)
..+.|+++||+|||++.+++. +..+|+++.++.+.... +|+|+||||.|.+|..+-+. ++ +|+||||||
T Consensus 416 ~newg~savTlHGRSRqQRYT--------K~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRG 487 (614)
T KOG2333|consen 416 VNEWGASAVTLHGRSRQQRYT--------KSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARG 487 (614)
T ss_pred hhccCcceEEecCchhhhhhh--------cccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeecc
Confidence 557999999999999876654 33459999998877655 99999999999999888777 44 999999999
Q ss_pred HhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhh
Q 017148 239 AYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFF 300 (376)
Q Consensus 239 ~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~ 300 (376)
+|..|||| .+|+...+.+. ++.+|.++++.|.+|+ ++|||++..+|...|++++.|+
T Consensus 488 ALIKPWIF-tEIkeqq~wD~-sSteRldiL~df~nyG---LeHWGSDt~GVetTRRFlLE~l 544 (614)
T KOG2333|consen 488 ALIKPWIF-TEIKEQQHWDI-SSTERLDILKDFCNYG---LEHWGSDTKGVETTRRFLLEFL 544 (614)
T ss_pred ccccchHh-hhhhhhhcCCc-cchHHHHHHHHHHhhh---hhhcCCccccHHHHHHHHHHHH
Confidence 99999997 56766555544 4578999999999987 7899999899988888877654
No 10
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=1.3e-43 Score=327.88 Aligned_cols=223 Identities=30% Similarity=0.540 Sum_probs=193.7
Q ss_pred cEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHC
Q 017148 10 WFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAY 89 (376)
Q Consensus 10 ri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~ 89 (376)
++++|||.++||.+||.+++.+| ++++||||+.++.+....+....+...++.+.|+++||.|+++++|+++|++++++
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~a 79 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEEL 79 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHC-CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhc
Confidence 47899999999999999999998 99999999999998887766556666778899999999999999999999999999
Q ss_pred CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccE
Q 017148 90 NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH 169 (376)
Q Consensus 90 G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~ 169 (376)
|||+||||+|||..+ .++++||++++++++++.++++++++.+++|++||+|.||++. ++..++ .+.+++.|+|+
T Consensus 80 G~d~ieln~g~p~~~-~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~---~~~~~~-~~~l~~~Gvd~ 154 (231)
T cd02801 80 GADGIDLNMGCPSPK-VTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLEL-AKALEDAGASA 154 (231)
T ss_pred CCCEEEEeCCCCHHH-HhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc---hHHHHH-HHHHHHhCCCE
Confidence 999999999999975 5678999999999999999999999998999999999998763 233332 34556799999
Q ss_pred EEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhh
Q 017148 170 FIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 170 I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
|+||+|+..... ..+.+++.++++++. +++||++||||.|++|+.++++ +|||+||+||+++.|||+|.
T Consensus 155 i~v~~~~~~~~~--------~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~ 224 (231)
T cd02801 155 LTVHGRTREQRY--------SGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFR 224 (231)
T ss_pred EEECCCCHHHcC--------CCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHH
Confidence 999999753211 123358888887765 5899999999999999999999 69999999999999999974
No 11
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=1.8e-39 Score=299.87 Aligned_cols=209 Identities=22% Similarity=0.316 Sum_probs=163.6
Q ss_pred cEEEccCCCCChHHHHHHHHHhCCCcEE--------------------EecceeecccccccchhhhhhccCCCCCCEEE
Q 017148 10 WFSVAPMMDWTDNHYRTLARLISKHAWL--------------------YTEMLAAETIIYQQGNLDRFLAFSPEQHPIVL 69 (376)
Q Consensus 10 ri~lAPM~~~td~~~r~~~~~~Gg~gl~--------------------~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~v 69 (376)
|++||||+|+||.+||......+|++++ .+||++.+.+-+-..... .....+.|+++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~---~~~~~~~p~~v 77 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIK---ALKDSNVLVGV 77 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHH---HhhccCCeEEE
Confidence 6899999999999999954333346665 445554442111111111 12334679999
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCc
Q 017148 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 149 (376)
Q Consensus 70 QL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~ 149 (376)
||+|++++.+.++|+.+++. .|+||||+|||++++++++. |++|+++|+.+.++++++++ .++||+||+|+||+ .
T Consensus 78 qi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~-G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~--~ 152 (233)
T cd02911 78 NVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGA-GEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD--V 152 (233)
T ss_pred EecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCc-chHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC--c
Confidence 99999999999999999886 59999999999998887775 99999999999999999998 59999999999987 3
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC
Q 017148 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
+..++ ++.++++|+|.|+++.+.. | .+.+|+.+++++ +++|||+||||.|++|+.+++++|
T Consensus 153 ~~~~l----a~~l~~aG~d~ihv~~~~~---g---------~~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~G 213 (233)
T cd02911 153 DDEEL----ARLIEKAGADIIHVDAMDP---G---------NHADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYG 213 (233)
T ss_pred CHHHH----HHHHHHhCCCEEEECcCCC---C---------CCCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcC
Confidence 33343 4556789999987765432 1 123477777765 489999999999999999999999
Q ss_pred cCeeEEchHHhhCCchhh
Q 017148 230 AHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 230 ad~VmiGRa~l~~P~lf~ 247 (376)
||+||+||+ .|||+|.
T Consensus 214 aD~VmiGR~--~~p~~~~ 229 (233)
T cd02911 214 ADMVSVARA--SLPENIE 229 (233)
T ss_pred CCEEEEcCC--CCchHHH
Confidence 999999999 9999973
No 12
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=2.4e-36 Score=294.59 Aligned_cols=243 Identities=17% Similarity=0.128 Sum_probs=187.4
Q ss_pred CCCeecCCcEEEccCC-------CCChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhh---hhh-cc
Q 017148 2 VARQYLPPWFSVAPMM-------DWTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~-------~~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~-~~ 60 (376)
|+++++||||++|||. ..|+..+++|. ++.||+|+++||.+.++..... +..+. ++. .+
T Consensus 7 i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~v 86 (343)
T cd04734 7 LGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAV 86 (343)
T ss_pred eCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHH
Confidence 6899999999999995 35888999886 6779999999999988743221 11111 222 26
Q ss_pred CCCCCCEEEEecCCC--------------------------------------HHHHHHHHHHHHHCCCCEEEecC--C-
Q 017148 61 SPEQHPIVLQIGGSN--------------------------------------LDNLAKATELANAYNYDEINLNC--G- 99 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~--------------------------------------~~~~~~aa~~~~~~G~d~IeiN~--g- 99 (376)
|..+.++++||++.. .++|++||++++++|||+||||+ |
T Consensus 87 h~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGy 166 (343)
T cd04734 87 HAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGH 166 (343)
T ss_pred HhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch
Confidence 888999999997410 37899999999999999999999 5
Q ss_pred ------CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC----ccHHHHHHHHHHHhhcCC-cc
Q 017148 100 ------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSP-TR 168 (376)
Q Consensus 100 ------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~----~~~~~~~~~i~~~~e~~G-vd 168 (376)
||.. +.|+|+||++++||.+++.+|+++||+.++.+++||+|+++++. .+.++.+++ ++.++++| +|
T Consensus 167 Ll~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~-~~~l~~~G~vd 244 (343)
T cd04734 167 LIDQFLSPLT-NRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEI-AARLAAEGLID 244 (343)
T ss_pred HHHHhhCCCc-CCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHH-HHHHHhcCCCC
Confidence 5654 57899999999999999999999999999989999999998663 246666654 56677898 99
Q ss_pred EEEEccCccccC-CCCC-CCCCCCCc-ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017148 169 HFIIHSRKALLN-GISP-AENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 169 ~I~vh~r~~~~~-g~~~-~~~~~~~~-~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
+|+||++..... +... ......++ ..++.++++++. .++|||+||+|.|+++++++++ ++||+||+||+++.|||
T Consensus 245 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~ 323 (343)
T cd04734 245 YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-VDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPH 323 (343)
T ss_pred EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-cCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCcc
Confidence 999987653211 0000 00001111 235666666665 4899999999999999999999 67999999999999999
Q ss_pred hhh
Q 017148 245 YTL 247 (376)
Q Consensus 245 lf~ 247 (376)
|+.
T Consensus 324 l~~ 326 (343)
T cd04734 324 LVA 326 (343)
T ss_pred HHH
Confidence 974
No 13
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=3.1e-35 Score=285.52 Aligned_cols=239 Identities=13% Similarity=0.149 Sum_probs=184.7
Q ss_pred CCCeecCCcEEEccCCC---------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhh---hhh-
Q 017148 2 VARQYLPPWFSVAPMMD---------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~---------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~- 58 (376)
||++++||||++|||.. .|+..+++|. ++.||+|+++||.+.+...... +..+. ++.
T Consensus 9 ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d 88 (337)
T PRK13523 9 IKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVT 88 (337)
T ss_pred ECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHH
Confidence 68999999999999953 3667888886 6779999999998877643211 11111 222
Q ss_pred ccCCCCCCEEEEecCCC-----------------------------------HHHHHHHHHHHHHCCCCEEEecCC----
Q 017148 59 AFSPEQHPIVLQIGGSN-----------------------------------LDNLAKATELANAYNYDEINLNCG---- 99 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~~-----------------------------------~~~~~~aa~~~~~~G~d~IeiN~g---- 99 (376)
.+|..+.++++||++.. .++|++||++++++|||+||||+|
T Consensus 89 ~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyL 168 (337)
T PRK13523 89 FIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYL 168 (337)
T ss_pred HHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchH
Confidence 36788999999997520 378999999999999999999999
Q ss_pred -----CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC--CCCccHHHHHHHHHHHhhcCCccEEEE
Q 017148 100 -----CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV--DDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 100 -----cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~--~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
||.. +.|+|+||++|+||.+++.||+++||+.++.||++|++..- ....+.++.+++ ++.+++.|+|+|+|
T Consensus 169 l~qFlSp~~-N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i-~~~l~~~gvD~i~v 246 (337)
T PRK13523 169 INEFLSPLS-NKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQY-AKWMKEQGVDLIDV 246 (337)
T ss_pred HHHhcCCcc-CCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHH-HHHHHHcCCCEEEe
Confidence 7985 48999999999999999999999999999999999999721 111246666654 45667899999999
Q ss_pred ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhH
Q 017148 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 173 h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~ 248 (376)
|+++..... .. ..+...+++..++++. +++||+++|+|.|+++++++++ .+||+|++||++++||||+.+
T Consensus 247 s~g~~~~~~---~~--~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k 317 (337)
T PRK13523 247 SSGAVVPAR---ID--VYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRI 317 (337)
T ss_pred CCCCCCCCC---CC--CCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHH
Confidence 998632100 00 0111135666666654 5899999999999999999999 569999999999999999643
No 14
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=100.00 E-value=5.6e-35 Score=280.77 Aligned_cols=228 Identities=21% Similarity=0.278 Sum_probs=175.5
Q ss_pred CCCeecCCcEEEcc-CCCCChHHHHHHHHHhCCCcEEEecceeec---------------------cccccc-chhhhhh
Q 017148 2 VARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAE---------------------TIIYQQ-GNLDRFL 58 (376)
Q Consensus 2 i~~~~l~nri~lAP-M~~~td~~~r~~~~~~Gg~gl~~te~v~~~---------------------~~~~~~-~~~~~~~ 58 (376)
+++++|+|||++|| |.+.++..+|.+++. |+|+++|+.++.+ ++.... ....+.+
T Consensus 5 ~~g~~l~npi~~aag~~~~~~~~~~~~~~~--G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~ 82 (300)
T TIGR01037 5 LFGIRFKNPLILASGIMGSGVESLRRIDRS--GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEEL 82 (300)
T ss_pred ECCEECCCCCEeCCcCCCCCHHHHHHHHHc--CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHH
Confidence 57899999999999 478999999987765 5899999555544 332211 1111111
Q ss_pred c--cCCCCCCEEEEecCCCHHHHHHHHHHHHHCC--CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017148 59 A--FSPEQHPIVLQIGGSNLDNLAKATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 59 ~--~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G--~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
. .++.+.|+++||+|++++++.++|+.+++++ +|+||||+|||+.+ + +|++++++++++.++++++++.++
T Consensus 83 ~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~-~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 83 KPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----G-GGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred HHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----C-CccccccCHHHHHHHHHHHHHhcC
Confidence 1 2334579999999999999999999999864 89999999999863 2 589999999999999999999999
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc-----c----------CCCCCCCCCCCCcccHHHHH
Q 017148 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----L----------NGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-----~----------~g~~~~~~~~~~~~~~~~v~ 199 (376)
+||+||++.++++ ..+ +++.++++|+|+|+||++... . +|.++ ..+.+..++.++
T Consensus 158 ~pv~vKi~~~~~~---~~~----~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg---~~~~~~~l~~v~ 227 (300)
T TIGR01037 158 VPVFAKLSPNVTD---ITE----IAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSG---PAIKPIALRMVY 227 (300)
T ss_pred CCEEEECCCChhh---HHH----HHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccc---hhhhHHHHHHHH
Confidence 9999999965432 222 345567899999999965421 0 11111 122333457788
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017148 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
++++.. ++|||+||||.|++|+.+++++|||+||+||+++.|||+|.
T Consensus 228 ~i~~~~-~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~ 274 (300)
T TIGR01037 228 DVYKMV-DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFK 274 (300)
T ss_pred HHHhcC-CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHH
Confidence 887764 89999999999999999999999999999999999999863
No 15
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=7.3e-34 Score=277.22 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=180.7
Q ss_pred CC-CeecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeecccccccc------------hhh---h
Q 017148 2 VA-RQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQG------------NLD---R 56 (376)
Q Consensus 2 i~-~~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~~------------~~~---~ 56 (376)
|+ +++|||||++|||.. .|+..+.++. |+.||+|+++||.+.++......+ .+. +
T Consensus 7 i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~ 86 (338)
T cd04733 7 LPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAFRE 86 (338)
T ss_pred cCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHHHHHH
Confidence 67 499999999999953 4778888886 777999999999888763321111 111 2
Q ss_pred hh-ccCCCCCCEEEEecCC-----------------------------------------CHHHHHHHHHHHHHCCCCEE
Q 017148 57 FL-AFSPEQHPIVLQIGGS-----------------------------------------NLDNLAKATELANAYNYDEI 94 (376)
Q Consensus 57 ~~-~~~~~~~p~~vQL~g~-----------------------------------------~~~~~~~aa~~~~~~G~d~I 94 (376)
+. .+|+.+.++++||++. ..++|++||++++++|||+|
T Consensus 87 l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgV 166 (338)
T cd04733 87 WAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAARLAQEAGFDGV 166 (338)
T ss_pred HHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 22 2688899999998751 02689999999999999999
Q ss_pred EecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC------CCCCCccHHHHHHH
Q 017148 95 NLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI------GVDDHDSYNQLCDF 157 (376)
Q Consensus 95 eiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~------g~~~~~~~~~~~~~ 157 (376)
|||+|| |.. +.|+|+||++|+||++++.|+|++||+++ ++||.+|++. || +.++.+++
T Consensus 167 eih~a~gyLl~qFlsp~~-N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~----~~eea~~i 241 (338)
T cd04733 167 QIHAAHGYLLSQFLSPLT-NKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGF----TEEDALEV 241 (338)
T ss_pred EEchhhhhHHHHhcCCcC-CCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCC----CHHHHHHH
Confidence 999997 764 47899999999999999999999999998 4789999873 33 34455554
Q ss_pred HHHHhhcCCccEEEEccCccccCCCC--CCCCCCCC-cccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCee
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGIS--PAENRTIP-PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHV 233 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~--~~~~~~~~-~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~V 233 (376)
++.+++.|+|+|+||+|+....... .......+ ...++...++++. +++||+++|+|.++++++++++ .+||+|
T Consensus 242 -a~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~~l~~g~aD~V 319 (338)
T cd04733 242 -VEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQALASGAVDGI 319 (338)
T ss_pred -HHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 4566789999999999864211110 00000011 1124555566665 4999999999999999999999 569999
Q ss_pred EEchHHhhCCchhh
Q 017148 234 MVGRAAYQNPWYTL 247 (376)
Q Consensus 234 miGRa~l~~P~lf~ 247 (376)
++||++++||||+.
T Consensus 320 ~lgR~~iadP~~~~ 333 (338)
T cd04733 320 GLARPLALEPDLPN 333 (338)
T ss_pred eeChHhhhCccHHH
Confidence 99999999999964
No 16
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=9.9e-34 Score=277.52 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=181.6
Q ss_pred CCC-eecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhh---hhh-
Q 017148 2 VAR-QYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL- 58 (376)
Q Consensus 2 i~~-~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~- 58 (376)
||+ ++|||||++|||.. +|+..+.+|. ++.| +|+++||.+.+...... +..+. ++.
T Consensus 7 ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g-~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~ 85 (353)
T cd04735 7 LKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGG-VGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQ 85 (353)
T ss_pred cCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCC-CCEEEECceEECcccCcCCCCceecChhhhHHHHHHHH
Confidence 677 99999999999953 5788888886 5556 99999999888643211 11122 222
Q ss_pred ccCCCCCCEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCCEEEecC
Q 017148 59 AFSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDEINLNC 98 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~~----------------------------------------~~~~~~aa~~~~~~G~d~IeiN~ 98 (376)
.+|..+.++++||++.. .++|++||++++++|||+||||+
T Consensus 86 ~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ 165 (353)
T cd04735 86 AIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHG 165 (353)
T ss_pred HHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 36888999999996410 26899999999999999999998
Q ss_pred C---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccC----ccEEEEecCCCCCC----ccHHHHHHHHHHH
Q 017148 99 G---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN----VPVSVKCRIGVDDH----DSYNQLCDFIYKV 161 (376)
Q Consensus 99 g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~----~pv~vKiR~g~~~~----~~~~~~~~~i~~~ 161 (376)
+ ||.. +.|+|+|||+++||.+++.||+++||++++ .++.|++|+++++. .+.++..++ ++.
T Consensus 166 ahGyLl~qFlsp~~-N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i-~~~ 243 (353)
T cd04735 166 ANGYLIQQFFSPHS-NRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLAL-VDK 243 (353)
T ss_pred ccchHHHHhcCCcc-CCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHH-HHH
Confidence 6 7985 488999999999999999999999999987 67888888876552 245666654 556
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
+++.|+|+|+||++....... ..+...+..+..+++.. .++|||++|+|+|+++++++++.|||+|++||+++
T Consensus 244 L~~~GvD~I~Vs~g~~~~~~~------~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~li 317 (353)
T cd04735 244 LADKGLDYLHISLWDFDRKSR------RGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLL 317 (353)
T ss_pred HHHcCCCEEEeccCccccccc------cCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHH
Confidence 678999999999875321100 01111234444444433 37999999999999999999998999999999999
Q ss_pred hCCchhh
Q 017148 241 QNPWYTL 247 (376)
Q Consensus 241 ~~P~lf~ 247 (376)
+||+|+.
T Consensus 318 adPdl~~ 324 (353)
T cd04735 318 VDPDWVE 324 (353)
T ss_pred hCccHHH
Confidence 9999864
No 17
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.9e-33 Score=276.51 Aligned_cols=243 Identities=14% Similarity=0.141 Sum_probs=180.9
Q ss_pred CCCeecCCcEEEccCCC---------CChHHHHHHH-HHhCCCcEEEecceeeccccc------------ccch-hh---
Q 017148 2 VARQYLPPWFSVAPMMD---------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIY------------QQGN-LD--- 55 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~---------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~------------~~~~-~~--- 55 (376)
||+++||||+++|||.. .|+..+.+|. ++.||+|+++||.+.+..... ..+. +.
T Consensus 7 ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k 86 (382)
T cd02931 7 IGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAK 86 (382)
T ss_pred ECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHH
Confidence 68999999999999952 3677888886 677999999999887753311 0111 11
Q ss_pred hhh-ccCCCCCCEEEEecCC----------------------------C-------------HHHHHHHHHHHHHCCCCE
Q 017148 56 RFL-AFSPEQHPIVLQIGGS----------------------------N-------------LDNLAKATELANAYNYDE 93 (376)
Q Consensus 56 ~~~-~~~~~~~p~~vQL~g~----------------------------~-------------~~~~~~aa~~~~~~G~d~ 93 (376)
++. .+|+.+.++++||++. . .++|++||++++++|||+
T Consensus 87 ~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~AGfDg 166 (382)
T cd02931 87 EMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAVIAKEAGFDG 166 (382)
T ss_pred HHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 222 3688899999999632 0 268999999999999999
Q ss_pred EEecC---CC-------CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC-----CCCC---------
Q 017148 94 INLNC---GC-------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-----GVDD--------- 147 (376)
Q Consensus 94 IeiN~---gc-------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~-----g~~~--------- 147 (376)
||||+ || |.. +.|+|+||++|+||++++.||+++||+++ ++||++|++. ++++
T Consensus 167 VEih~ah~GyLl~qFLSp~~-N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~ 245 (382)
T cd02931 167 VEIHAVHEGYLLDQFTISLF-NKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQ 245 (382)
T ss_pred EEEeccccChHHHHhcCCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccc
Confidence 99998 65 443 57899999999999999999999999998 5799999985 1111
Q ss_pred --CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc-HHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017148 148 --HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 148 --~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
..+.++.+++ ++.++++|+|+|+||+|+.......... ...++.. +..+..+++. +++|||++|+|.+++++++
T Consensus 246 ~~g~~~e~~~~~-~~~l~~~gvD~l~vs~g~~~~~~~~~~~-~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~~~~ 322 (382)
T cd02931 246 EKGRDLEEGLKA-AKILEEAGYDALDVDAGSYDAWYWNHPP-MYQKKGMYLPYCKALKEV-VDVPVIMAGRMEDPELASE 322 (382)
T ss_pred cCCCCHHHHHHH-HHHHHHhCCCEEEeCCCCCcccccccCC-ccCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHH
Confidence 1245666654 5566789999999999874211100000 1112222 3455555555 5899999999999999999
Q ss_pred HHH-cCcCeeEEchHHhhCCchhhH
Q 017148 225 ALR-KGAHHVMVGRAAYQNPWYTLG 248 (376)
Q Consensus 225 ~l~-~Gad~VmiGRa~l~~P~lf~~ 248 (376)
+++ .+||+|++||+++.||||+.+
T Consensus 323 ~l~~g~~D~V~~gR~~ladP~l~~k 347 (382)
T cd02931 323 AINEGIADMISLGRPLLADPDVVNK 347 (382)
T ss_pred HHHcCCCCeeeechHhHhCccHHHH
Confidence 999 669999999999999999643
No 18
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=100.00 E-value=2e-33 Score=275.63 Aligned_cols=241 Identities=17% Similarity=0.142 Sum_probs=182.3
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhhh---hh-cc
Q 017148 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLDR---FL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~~---~~-~~ 60 (376)
||+++|||||++|||.. .|+..+++|. ++.||+|+++||.+.+...... +..+.. +. .+
T Consensus 7 ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~v 86 (353)
T cd02930 7 LGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAV 86 (353)
T ss_pred ECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 68999999999999962 4788888886 6779999999998887643211 111222 22 36
Q ss_pred CCCCCCEEEEecCC----------------------C------------HHHHHHHHHHHHHCCCCEEEecCC-------
Q 017148 61 SPEQHPIVLQIGGS----------------------N------------LDNLAKATELANAYNYDEINLNCG------- 99 (376)
Q Consensus 61 ~~~~~p~~vQL~g~----------------------~------------~~~~~~aa~~~~~~G~d~IeiN~g------- 99 (376)
|..+.++++||++. . .++|++||++++++|||+||||++
T Consensus 87 h~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~q 166 (353)
T cd02930 87 HAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQ 166 (353)
T ss_pred HHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHH
Confidence 88899999999642 0 378999999999999999999876
Q ss_pred --CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC----ccHHHHHHHHHHHhhcCCccEEEEc
Q 017148 100 --CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 100 --cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~----~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
||.. +.|+|+||++++||++++.+++++||+.++.++.|++|+++.|. .+.++.+++ ++.++++|+|+|+|+
T Consensus 167 Flsp~~-N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i-~~~Le~~G~d~i~vs 244 (353)
T cd02930 167 FLAPRT-NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVAL-AKALEAAGADILNTG 244 (353)
T ss_pred hcCCcc-CCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHH-HHHHHHcCCCEEEeC
Confidence 8875 48899999999999999999999999999878888888876542 256666654 556788999999997
Q ss_pred cCccccCCCCCCCCCCCCcccHH-HHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhh
Q 017148 174 SRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 174 ~r~~~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
.+... ...+......++..+. ...++++. +++||+++|+|.++++++++++ .+||+||+||++++||||+.
T Consensus 245 ~g~~e--~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~ 317 (353)
T cd02930 245 IGWHE--ARVPTIATSVPRGAFAWATAKLKRA-VDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVA 317 (353)
T ss_pred CCcCC--CCCccccccCCchhhHHHHHHHHHh-CCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHH
Confidence 54211 0000000111222233 33455554 5999999999999999999999 66999999999999999964
No 19
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2.5e-33 Score=272.45 Aligned_cols=243 Identities=15% Similarity=0.129 Sum_probs=185.2
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhhh---hh-c
Q 017148 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLDR---FL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~~---~~-~ 59 (376)
|+++++|||+++|||.. .|+..+++|. ++.||+|+++||.+.+...... ...+.. +. .
T Consensus 6 i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (327)
T cd02803 6 IGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEA 85 (327)
T ss_pred cCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHH
Confidence 68999999999999963 4788888886 6668999999999888754221 112222 22 3
Q ss_pred cCCCCCCEEEEecCCC--------------------------------------HHHHHHHHHHHHHCCCCEEEecCC--
Q 017148 60 FSPEQHPIVLQIGGSN--------------------------------------LDNLAKATELANAYNYDEINLNCG-- 99 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~--------------------------------------~~~~~~aa~~~~~~G~d~IeiN~g-- 99 (376)
+|..+.++++||++.. .++|+++|++++++|||+||||++
T Consensus 86 vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~g 165 (327)
T cd02803 86 VHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHG 165 (327)
T ss_pred HHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhh
Confidence 6788888999997420 378999999999999999999998
Q ss_pred -------CCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCC--CccHHHHHHHHHHHhhcCCcc
Q 017148 100 -------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDD--HDSYNQLCDFIYKVSSLSPTR 168 (376)
Q Consensus 100 -------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~--~~~~~~~~~~i~~~~e~~Gvd 168 (376)
||.. +.|+|+||+++++|++++.|++++|++.+ ++||.||++..... ..+.++..++ ++.+++.|+|
T Consensus 166 yL~~qFlsp~~-n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~l-a~~l~~~G~d 243 (327)
T cd02803 166 YLLSQFLSPYT-NKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEI-AKALEEAGVD 243 (327)
T ss_pred hHHHHhcCccc-cCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHH-HHHHHHcCCC
Confidence 6765 47899999999999999999999999988 67999999874221 1234555554 4566789999
Q ss_pred EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhh
Q 017148 169 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 169 ~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
+|+||+++..................++.+.++++.+ ++||+++|+|.|+++++++++ .+||+|++||+++.||+|+.
T Consensus 244 ~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~ 322 (327)
T cd02803 244 ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPN 322 (327)
T ss_pred EEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHH
Confidence 9999988643211100000011223456667776654 899999999999999999999 58999999999999999863
No 20
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=100.00 E-value=3.5e-33 Score=255.81 Aligned_cols=206 Identities=17% Similarity=0.199 Sum_probs=161.3
Q ss_pred CCCCChHHHHHHHHHhCCCcEEEecceeeccccc--------ccc-----h---hhhh----hccCCCCCCEEEEecCCC
Q 017148 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY--------QQG-----N---LDRF----LAFSPEQHPIVLQIGGSN 75 (376)
Q Consensus 16 M~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~--------~~~-----~---~~~~----~~~~~~~~p~~vQL~g~~ 75 (376)
|+|.||..|..-... .+|+++.+..+.+.-.+ ..+ . ...+ +..-++..|+++|+.+++
T Consensus 1 mag~~d~~~~~~~~~--~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~~~~~vivnv~~~~ 78 (231)
T TIGR00736 1 MAGITDAEFCRKFKD--LFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAESRALVSVNVRFVD 78 (231)
T ss_pred CCCcchHHHHHhcCc--CcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHhhcCCEEEEEecCC
Confidence 899999999665432 26788877776552211 110 0 0111 111135669999999999
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
++++.++++.+++ ++|+||||||||++++.+.+. |++|+++|+.+.++++++++ .++||+||+|+++++. +..+
T Consensus 79 ~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~-G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~-~~~~-- 152 (231)
T TIGR00736 79 LEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGI-GQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPL-DELI-- 152 (231)
T ss_pred HHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCC-chhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcc-hHHH--
Confidence 9999999999988 699999999999999887775 99999999999999999994 5899999999998652 2223
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017148 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+++.++++|+|+|+||.+. .|. +...|+.++++++.+.++|||+||||+|++|+.+++++|||+||+
T Consensus 153 --~a~~l~~aGad~i~Vd~~~---~g~--------~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 153 --DALNLVDDGFDGIHVDAMY---PGK--------PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred --HHHHHHHcCCCEEEEeeCC---CCC--------chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 3456789999999999654 221 124599999998876459999999999999999999999999999
Q ss_pred chHHhhC
Q 017148 236 GRAAYQN 242 (376)
Q Consensus 236 GRa~l~~ 242 (376)
||+++.+
T Consensus 220 gR~~l~~ 226 (231)
T TIGR00736 220 ARAILKG 226 (231)
T ss_pred cHhhccC
Confidence 9999965
No 21
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=100.00 E-value=1.2e-32 Score=268.03 Aligned_cols=240 Identities=18% Similarity=0.183 Sum_probs=180.2
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHH-HHhCCCcEEEecceeeccccccc---------chhhhh---h-c
Q 017148 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLDRF---L-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~~~---~-~ 59 (376)
|++++|||||+||||+. .|+...++|. |+.||+|+++||.+.++.-.... ..+..+ . .
T Consensus 12 lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~a 91 (363)
T COG1902 12 LGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEA 91 (363)
T ss_pred ECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHHH
Confidence 68999999999999975 4678888885 78889999999987776433211 112222 2 3
Q ss_pred cCCCCCCEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCCEEEecCC
Q 017148 60 FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDEINLNCG 99 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~----------------------------------------~~~~~~aa~~~~~~G~d~IeiN~g 99 (376)
+|..+.++++||.+.. .++|++||++++++|||+||||.+
T Consensus 92 vH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~A 171 (363)
T COG1902 92 VHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGA 171 (363)
T ss_pred HHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeec
Confidence 6889999999998532 268999999999999999999987
Q ss_pred ---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecCCCC-C--CccHHHHHHHHHHHhhcC
Q 017148 100 ---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVD-D--HDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 100 ---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~g~~-~--~~~~~~~~~~i~~~~e~~ 165 (376)
+|.. +.|+|+|||+++||.+++.|||++||+.++. ||.++++..-. . ..+.++... +++.+++.
T Consensus 172 hGYLi~qFlsp~t-N~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~-la~~L~~~ 249 (363)
T COG1902 172 HGYLLSQFLSPLT-NKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVE-LAKALEEA 249 (363)
T ss_pred cchHHHHhcCCcc-CCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHH-HHHHHHhc
Confidence 6775 5899999999999999999999999999854 67777776211 1 124556555 45677889
Q ss_pred C-ccEEEEccCccccCCCCCCCCCCCCcccHHHHH-HHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhC
Q 017148 166 P-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYY-ALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQN 242 (376)
Q Consensus 166 G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~-~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~ 242 (376)
| +|+|++.++.....+.... .. +....... .+++. .++|||++|+|+++++++++++.| ||.|.+||++|.|
T Consensus 250 G~~d~i~vs~~~~~~~~~~~~---~~-~~~~~~~a~~i~~~-~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 250 GLVDYIHVSEGGYERGGTITV---SG-PGYQVEFAARIKKA-VRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD 324 (363)
T ss_pred CCccEEEeecccccCCCCccc---cc-cchhHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC
Confidence 9 7999998765421111000 00 11122222 34443 479999999999999999999965 9999999999999
Q ss_pred CchhhH
Q 017148 243 PWYTLG 248 (376)
Q Consensus 243 P~lf~~ 248 (376)
|+|..+
T Consensus 325 P~~~~k 330 (363)
T COG1902 325 PDLVLK 330 (363)
T ss_pred ccHHHH
Confidence 998643
No 22
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=2.5e-32 Score=265.57 Aligned_cols=231 Identities=17% Similarity=0.119 Sum_probs=177.9
Q ss_pred CCCeecCCcEEEccCCC--------CChHHHHHHHHHhCCCcEEEecceeeccccccc---------chh---hhhh-cc
Q 017148 2 VARQYLPPWFSVAPMMD--------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ---------GNL---DRFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~---------~~~---~~~~-~~ 60 (376)
|+++++||||++|||.. +|+..++++.+.+.| |+++||.+.+....... ..+ .++. .+
T Consensus 8 ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~v 86 (338)
T cd02933 8 LGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAV 86 (338)
T ss_pred eCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHH
Confidence 68999999999999953 477888888755555 99999998886432211 111 1222 36
Q ss_pred CCCCCCEEEEecCC----------------------------------C---------------HHHHHHHHHHHHHCCC
Q 017148 61 SPEQHPIVLQIGGS----------------------------------N---------------LDNLAKATELANAYNY 91 (376)
Q Consensus 61 ~~~~~p~~vQL~g~----------------------------------~---------------~~~~~~aa~~~~~~G~ 91 (376)
|..+.++++||.+. . .++|++||++++++||
T Consensus 87 h~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGf 166 (338)
T cd02933 87 HAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAARNAIEAGF 166 (338)
T ss_pred HhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88899999998540 0 2689999999999999
Q ss_pred CEEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecCCC-----CCCccHHHHHH
Q 017148 92 DEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DDHDSYNQLCD 156 (376)
Q Consensus 92 d~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~g~-----~~~~~~~~~~~ 156 (376)
|+||||++| |.. +.|+|+||++|+||.+++.||+++||+.++. +|++|++..- ....+.++.++
T Consensus 167 DgVeih~ahGyLl~qFlSp~~-N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~ 245 (338)
T cd02933 167 DGVEIHGANGYLIDQFLRDGS-NKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSY 245 (338)
T ss_pred CEEEEccccchhHHHhcCCcc-CCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHH
Confidence 999999998 764 4889999999999999999999999998854 8999988631 11134566665
Q ss_pred HHHHHhhcCCccEEEE-ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeE
Q 017148 157 FIYKVSSLSPTRHFII-HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM 234 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~v-h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vm 234 (376)
+ ++.+++.|+|+|+| |++..... ....++...++++. .++|||++|+|. +++++++++ .+||+|+
T Consensus 246 ~-~~~l~~~g~d~i~vs~g~~~~~~----------~~~~~~~~~~ik~~-~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 246 L-AKELNKRGLAYLHLVEPRVAGNP----------EDQPPDFLDFLRKA-FKGPLIAAGGYD-AESAEAALADGKADLVA 312 (338)
T ss_pred H-HHHHHHcCCcEEEEecCCCCCcc----------cccchHHHHHHHHH-cCCCEEEECCCC-HHHHHHHHHcCCCCEEE
Confidence 4 55677899999999 45432111 12236666677665 489999999997 999999999 5699999
Q ss_pred EchHHhhCCchhh
Q 017148 235 VGRAAYQNPWYTL 247 (376)
Q Consensus 235 iGRa~l~~P~lf~ 247 (376)
+||++++||||+.
T Consensus 313 ~gR~~ladP~~~~ 325 (338)
T cd02933 313 FGRPFIANPDLVE 325 (338)
T ss_pred eCHhhhhCcCHHH
Confidence 9999999999964
No 23
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2e-32 Score=267.42 Aligned_cols=234 Identities=18% Similarity=0.173 Sum_probs=178.4
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeecccccc----------cchh---hhhh-c
Q 017148 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ----------QGNL---DRFL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~----------~~~~---~~~~-~ 59 (376)
||++++||||+++||.. +|+..+.++. ++.||+|+++||.+.+...... ...+ .++. .
T Consensus 7 ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~d~ 86 (361)
T cd04747 7 LKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDE 86 (361)
T ss_pred ECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHHHH
Confidence 68999999999999963 4788898886 6779999999998888522111 0111 1222 2
Q ss_pred cCCCCCCEEEEecCCC----------------------------------------HHHHHHHHHHHHHCCCCEEEecCC
Q 017148 60 FSPEQHPIVLQIGGSN----------------------------------------LDNLAKATELANAYNYDEINLNCG 99 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~----------------------------------------~~~~~~aa~~~~~~G~d~IeiN~g 99 (376)
+|..+.++++||++.. .++|++||++++++|||+||||++
T Consensus 87 vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~a 166 (361)
T cd04747 87 VHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELHGA 166 (361)
T ss_pred HHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 6888999999996410 258999999999999999999999
Q ss_pred C---------CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCC--C-----CccHHHHHHHHHHH
Q 017148 100 C---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD--D-----HDSYNQLCDFIYKV 161 (376)
Q Consensus 100 c---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~--~-----~~~~~~~~~~i~~~ 161 (376)
| |.. +.|+|+||++++||.+++.||+++||+.+ ++||.||++. ++ + ..+.+++.++ ++.
T Consensus 167 hGyLl~qFLSp~~-N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~~~~~~~~~g~~~~e~~~~-~~~ 243 (361)
T cd04747 167 HGYLIDQFFWAGT-NRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WKQQDYTARLADTPDELEAL-LAP 243 (361)
T ss_pred cchHHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-ccccccccCCCCCHHHHHHH-HHH
Confidence 9 875 48899999999999999999999999998 4799999984 21 1 1345666654 445
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC------------------CCHHHHH
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI------------------NTVDEVN 223 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI------------------~s~~da~ 223 (376)
+++.|+|+|+|+.+....... ....+.+...+++. .++||+++|+| .|+++++
T Consensus 244 l~~~gvd~i~vs~g~~~~~~~--------~~~~~~~~~~~k~~-~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~ 314 (361)
T cd04747 244 LVDAGVDIFHCSTRRFWEPEF--------EGSELNLAGWTKKL-TGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLL 314 (361)
T ss_pred HHHcCCCEEEecCCCccCCCc--------CccchhHHHHHHHH-cCCCEEEECCcccccccccccccccccccCCHHHHH
Confidence 678999999887653110000 11123444445444 58999999999 6999999
Q ss_pred HHHH-cCcCeeEEchHHhhCCchhh
Q 017148 224 AALR-KGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 224 ~~l~-~Gad~VmiGRa~l~~P~lf~ 247 (376)
++++ .+||+|++||++++||||+.
T Consensus 315 ~~l~~g~~D~V~~gR~~iadP~~~~ 339 (361)
T cd04747 315 ERLERGEFDLVAVGRALLSDPAWVA 339 (361)
T ss_pred HHHHCCCCCeehhhHHHHhCcHHHH
Confidence 9999 66999999999999999964
No 24
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=100.00 E-value=3.1e-32 Score=268.18 Aligned_cols=239 Identities=12% Similarity=0.095 Sum_probs=177.2
Q ss_pred CCCeecCCcEEEccCCC----CChHHHH-HHH-HHhCCCcEEEecceeecccccc----------cchhhh---hh-ccC
Q 017148 2 VARQYLPPWFSVAPMMD----WTDNHYR-TLA-RLISKHAWLYTEMLAAETIIYQ----------QGNLDR---FL-AFS 61 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~----~td~~~r-~~~-~~~Gg~gl~~te~v~~~~~~~~----------~~~~~~---~~-~~~ 61 (376)
|++++|||||++|||.. .++..+. ++. ++.||+|+++||.+.+...... +..+.. +. .+|
T Consensus 14 ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh 93 (370)
T cd02929 14 IGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVH 93 (370)
T ss_pred CCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHH
Confidence 78999999999999963 2334443 444 6889999999998887633211 111222 22 267
Q ss_pred CCCCCEEEEecCC--------------------------C---------------HHHHHHHHHHHHHCCCCEEEecCCC
Q 017148 62 PEQHPIVLQIGGS--------------------------N---------------LDNLAKATELANAYNYDEINLNCGC 100 (376)
Q Consensus 62 ~~~~p~~vQL~g~--------------------------~---------------~~~~~~aa~~~~~~G~d~IeiN~gc 100 (376)
..+.++++||++. . .++|++||++++++|||+||||++|
T Consensus 94 ~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ah 173 (370)
T cd02929 94 KHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAH 173 (370)
T ss_pred HCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 8889999999531 0 2689999999999999999999998
Q ss_pred ---------CCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC------ccHHHHHHHHHHHhhcC
Q 017148 101 ---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH------DSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 101 ---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~------~~~~~~~~~i~~~~e~~ 165 (376)
|.. +.|+|+||++++||.+++.||+++||+.++.++.|++|++.++. .+.++.++++ +++++.
T Consensus 174 GyLl~QFlSp~~-N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~-~~l~~~ 251 (370)
T cd02929 174 GYLPLQFLLPRY-NKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFV-EMLDEL 251 (370)
T ss_pred cchHHHhhCccc-cCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHH-HHHHhh
Confidence 764 58899999999999999999999999999877888888876542 2456666543 445544
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcc-cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCC
Q 017148 166 PTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~-~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P 243 (376)
+|++.|+.+.....+.. ....++. .++...++++. +++|||++|+|.++++++++++ .+||+|++||++++||
T Consensus 252 -~D~i~vs~g~~~~~~~~---~~~~~~~~~~~~~~~ik~~-~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP 326 (370)
T cd02929 252 -PDLWDVNVGDWANDGED---SRFYPEGHQEPYIKFVKQV-TSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADP 326 (370)
T ss_pred -CCEEEecCCCccccccc---cccCCccccHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCc
Confidence 89999987642211110 0111111 24555566554 5999999999999999999999 6699999999999999
Q ss_pred chhh
Q 017148 244 WYTL 247 (376)
Q Consensus 244 ~lf~ 247 (376)
||+.
T Consensus 327 ~l~~ 330 (370)
T cd02929 327 FLPK 330 (370)
T ss_pred hHHH
Confidence 9964
No 25
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=100.00 E-value=5.9e-32 Score=263.65 Aligned_cols=238 Identities=18% Similarity=0.205 Sum_probs=180.5
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhh---hhh-cc
Q 017148 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~-~~ 60 (376)
||+++|||||++|||.. .|+..+.+|. ++.||+|+++||.+.++..... +..+. ++. .+
T Consensus 7 ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~v 86 (336)
T cd02932 7 LRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFI 86 (336)
T ss_pred ECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHH
Confidence 68999999999999953 4778888886 6779999999998887643221 11122 222 26
Q ss_pred CCCCCCEEEEecCC---------------------------------------------------CHHHHHHHHHHHHHC
Q 017148 61 SPEQHPIVLQIGGS---------------------------------------------------NLDNLAKATELANAY 89 (376)
Q Consensus 61 ~~~~~p~~vQL~g~---------------------------------------------------~~~~~~~aa~~~~~~ 89 (376)
|..+.++++||++. -.++|+++|++++++
T Consensus 87 h~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a~~a 166 (336)
T cd02932 87 HSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRAVEA 166 (336)
T ss_pred HhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 78889999998531 026899999999999
Q ss_pred CCCEEEecCCC---------CCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCC--CCCCccHHHHHH
Q 017148 90 NYDEINLNCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG--VDDHDSYNQLCD 156 (376)
Q Consensus 90 G~d~IeiN~gc---------P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g--~~~~~~~~~~~~ 156 (376)
|||+||||+|| |.. +.|+|+||++|+||++++.+++++||+.+ ++||.+|++.. .+...+.++.++
T Consensus 167 GfDgVei~~~~gyLl~qFlsp~~-N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ 245 (336)
T cd02932 167 GFDVIEIHAAHGYLLHQFLSPLS-NKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVE 245 (336)
T ss_pred CCCEEEEccccccHHHHhcCCcc-CCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHH
Confidence 99999999987 654 47899999999999999999999999998 68999999852 111123555555
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCC-CcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc-CcCeeE
Q 017148 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI-PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVM 234 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~-~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~-Gad~Vm 234 (376)
+ ++.+++.|+|+|+||.+..... ..... +...++...++++.+ ++||+++|+|.|+++++++++. .||+||
T Consensus 246 i-a~~Le~~gvd~iev~~g~~~~~-----~~~~~~~~~~~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 318 (336)
T cd02932 246 L-AKALKELGVDLIDVSSGGNSPA-----QKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEAILESGRADLVA 318 (336)
T ss_pred H-HHHHHHcCCCEEEECCCCCCcc-----cccCCCccccHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHcCCCCeeh
Confidence 4 4556789999999996532100 00011 112245666666654 8999999999999999999995 599999
Q ss_pred EchHHhhCCchhh
Q 017148 235 VGRAAYQNPWYTL 247 (376)
Q Consensus 235 iGRa~l~~P~lf~ 247 (376)
+||+++.||+|+.
T Consensus 319 ~gR~~i~dP~~~~ 331 (336)
T cd02932 319 LGRELLRNPYWPL 331 (336)
T ss_pred hhHHHHhCccHHH
Confidence 9999999999863
No 26
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=1.6e-31 Score=256.37 Aligned_cols=229 Identities=22% Similarity=0.299 Sum_probs=176.7
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccc-h------------------hhhhhc---
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQG-N------------------LDRFLA--- 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~-~------------------~~~~~~--- 59 (376)
+.|++++||+++|.-..-++..++.++.. ||+|.++|++++.+....... . ...+++
T Consensus 4 ~~G~~~~nP~~~aag~~~~~~~~~~~~~~-g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~ 82 (296)
T cd04740 4 LAGLRLKNPVILASGTFGFGEELSRVADL-GKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELL 82 (296)
T ss_pred ECCEEcCCCCEECCCCCCCHHHHHHHHhc-CCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHH
Confidence 46899999999984211278888887664 569999999999875432111 1 112221
Q ss_pred --cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccE
Q 017148 60 --FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV 137 (376)
Q Consensus 60 --~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv 137 (376)
.+..+.|+++||+|+++++|+++|++++++|+|+||||++||+.+ +. |+.+.++++++.++++++++.+++||
T Consensus 83 ~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~-g~~~~~~~~~~~eiv~~vr~~~~~Pv 157 (296)
T cd04740 83 PWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK----GG-GMAFGTDPEAVAEIVKAVKKATDVPV 157 (296)
T ss_pred HHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CC-cccccCCHHHHHHHHHHHHhccCCCE
Confidence 134578999999999999999999999999999999999999853 22 77788999999999999999999999
Q ss_pred EEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc---------------CCCCCCCCCCCCcccHHHHHHHH
Q 017148 138 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---------------NGISPAENRTIPPLKYEYYYALL 202 (376)
Q Consensus 138 ~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~---------------~g~~~~~~~~~~~~~~~~v~~~~ 202 (376)
+||++..++ +..++ ++.++++|+|.|++++++... .|.++ ..+.+..++++++++
T Consensus 158 ~vKl~~~~~---~~~~~----a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg---~~~~~~~~~~i~~i~ 227 (296)
T cd04740 158 IVKLTPNVT---DIVEI----ARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSG---PAIKPIALRMVYQVY 227 (296)
T ss_pred EEEeCCCch---hHHHH----HHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecC---cccchHHHHHHHHHH
Confidence 999987543 23333 345668999999986543210 12221 233455678888888
Q ss_pred hhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017148 203 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 203 ~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
+.. ++|||++|||.|++|+.++++.|||+||+||+++.|||+|.
T Consensus 228 ~~~-~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~ 271 (296)
T cd04740 228 KAV-EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFK 271 (296)
T ss_pred Hhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHH
Confidence 765 89999999999999999999999999999999999999863
No 27
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=7.2e-31 Score=280.84 Aligned_cols=243 Identities=18% Similarity=0.200 Sum_probs=184.0
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeecccccc---------cchhh---hhh-cc
Q 017148 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQ---------QGNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~---------~~~~~---~~~-~~ 60 (376)
|++++|||||+++||.. .|+.++.++. ++.||+|+|+||.+.+....+. +..+. ++. .+
T Consensus 405 i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~v 484 (765)
T PRK08255 405 LRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFV 484 (765)
T ss_pred cCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHH
Confidence 68999999999999953 4778888875 7779999999999888644221 11111 222 25
Q ss_pred CCC-CCCEEEEecCC-------------------------------------C------------HHHHHHHHHHHHHCC
Q 017148 61 SPE-QHPIVLQIGGS-------------------------------------N------------LDNLAKATELANAYN 90 (376)
Q Consensus 61 ~~~-~~p~~vQL~g~-------------------------------------~------------~~~~~~aa~~~~~~G 90 (376)
|.. +.++++||++. . .++|++||++++++|
T Consensus 485 h~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aG 564 (765)
T PRK08255 485 HANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAEAG 564 (765)
T ss_pred HhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 777 58999998530 0 268999999999999
Q ss_pred CCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecC-CCCC-CccHHHHHHH
Q 017148 91 YDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-GVDD-HDSYNQLCDF 157 (376)
Q Consensus 91 ~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~-g~~~-~~~~~~~~~~ 157 (376)
||+||||+| ||.. +.|+|+||++++||.+++.||+++||+.+ ++||++|++. +|.+ ..+.++.+++
T Consensus 565 fDgveih~ahGyLl~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~ 643 (765)
T PRK08255 565 FDWLELHCAHGYLLSSFISPLT-NQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEI 643 (765)
T ss_pred CCEEEEecccchHHHHhcCCCC-CCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHH
Confidence 999999999 9996 48899999999999999999999999987 4799999997 3333 2345666654
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc-HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEE
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
++.+++.|+|+|+||++...... .+ ...+.. ..+..++++. .++|||++|+|+++++++++++ .+||+||+
T Consensus 644 -~~~l~~~g~d~i~vs~g~~~~~~-~~----~~~~~~~~~~~~~ik~~-~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~ 716 (765)
T PRK08255 644 -ARAFKAAGADLIDVSSGQVSKDE-KP----VYGRMYQTPFADRIRNE-AGIATIAVGAISEADHVNSIIAAGRADLCAL 716 (765)
T ss_pred -HHHHHhcCCcEEEeCCCCCCcCC-CC----CcCccccHHHHHHHHHH-cCCEEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 55678899999999965321100 00 011111 2334455554 5899999999999999999999 77999999
Q ss_pred chHHhhCCchhhHhhhh
Q 017148 236 GRAAYQNPWYTLGHVDT 252 (376)
Q Consensus 236 GRa~l~~P~lf~~~~~~ 252 (376)
||++++||+|.++..+.
T Consensus 717 gR~~l~dP~~~~~~~~~ 733 (765)
T PRK08255 717 ARPHLADPAWTLHEAAE 733 (765)
T ss_pred cHHHHhCccHHHHHHHH
Confidence 99999999776666554
No 28
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.97 E-value=2.6e-30 Score=248.11 Aligned_cols=232 Identities=18% Similarity=0.212 Sum_probs=174.4
Q ss_pred CCCeecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeec-ccccc-cc----------------h--------h
Q 017148 2 VARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQ-QG----------------N--------L 54 (376)
Q Consensus 2 i~~~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~-~~----------------~--------~ 54 (376)
+.+++|+|||++|.-. +-+...++.+... | +|.++|..++.+ ....+ .+ + .
T Consensus 6 ~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~-G-~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~~~ 83 (299)
T cd02940 6 FCGIKFPNPFGLASAPPTTSYPMIRRAFEA-G-WGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKPL 83 (299)
T ss_pred ECCEEcCCCCEeCCcCCCCCHHHHHHHHHh-C-CCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccccCH
Confidence 4689999999999832 2244555665543 4 899999988877 21110 00 0 1
Q ss_pred hhhh----cc-CC-CCCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHH
Q 017148 55 DRFL----AF-SP-EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127 (376)
Q Consensus 55 ~~~~----~~-~~-~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~ 127 (376)
..++ .. .. .+.|+++|++|. ++++|.++|+.++++|+|+||||+|||+.. .+++ +|+.++++++.+.++++
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-~~~~-~G~~l~~~~~~~~~iv~ 161 (299)
T cd02940 84 EYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGM-PERG-MGAAVGQDPELVEEICR 161 (299)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CCCC-CchhhccCHHHHHHHHH
Confidence 1111 11 11 268999999998 999999999999999999999999999973 4444 59999999999999999
Q ss_pred HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc--------------------cCCCCCCCC
Q 017148 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------------------LNGISPAEN 187 (376)
Q Consensus 128 ~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--------------------~~g~~~~~~ 187 (376)
++++.+++||+||+|++.+ ++.++ ++.++++|+|.|+++.+... .+|+++
T Consensus 162 ~v~~~~~~Pv~vKl~~~~~---~~~~~----a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG--- 231 (299)
T cd02940 162 WVREAVKIPVIAKLTPNIT---DIREI----ARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSG--- 231 (299)
T ss_pred HHHHhcCCCeEEECCCCch---hHHHH----HHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccC---
Confidence 9999999999999998543 23333 34456899999986433211 123333
Q ss_pred CCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchhh
Q 017148 188 RTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTL 247 (376)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~ 247 (376)
+.+.|..|+.++++++... ++|||+||||.|++|+.+++.+|||+|||||+++. .|.++.
T Consensus 232 ~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~ 293 (299)
T cd02940 232 PAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVD 293 (299)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHH
Confidence 3455667999999988752 79999999999999999999999999999999998 798864
No 29
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.97 E-value=3.6e-31 Score=258.40 Aligned_cols=243 Identities=16% Similarity=0.163 Sum_probs=166.6
Q ss_pred CCCeecCCcEEEccCCC--------CCh-HHHHHHH-HHhCCCcEEEecceeeccccccc---------chhh---hhh-
Q 017148 2 VARQYLPPWFSVAPMMD--------WTD-NHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~--------~td-~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~- 58 (376)
||+++|||||++|||.. +++ ..++++. |+.||+|+++||.+.++...... ..+. ++.
T Consensus 8 ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~ 87 (341)
T PF00724_consen 8 IGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLAD 87 (341)
T ss_dssp ETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHH
T ss_pred ECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHHHHH
Confidence 68999999999999964 344 6677775 78899999999999988543321 1111 122
Q ss_pred ccCCCCCCEEEEecCCC-------------------------------------------HHHHHHHHHHHHHCCCCEEE
Q 017148 59 AFSPEQHPIVLQIGGSN-------------------------------------------LDNLAKATELANAYNYDEIN 95 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g~~-------------------------------------------~~~~~~aa~~~~~~G~d~Ie 95 (376)
.+|..+.++++||++.. .++|++||++++++|||+||
T Consensus 88 ~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~AGfDGVE 167 (341)
T PF00724_consen 88 AVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRAKEAGFDGVE 167 (341)
T ss_dssp HHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHHHHhccCeEe
Confidence 36888999999997520 26899999999999999999
Q ss_pred ecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCC--CCccHHHHHHHHHHHh
Q 017148 96 LNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD--DHDSYNQLCDFIYKVS 162 (376)
Q Consensus 96 iN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~--~~~~~~~~~~~i~~~~ 162 (376)
||++ +|.. |.|+|+|||+++||.+++.|||++||+.+ ++||.+|+...-. ...+.++..+ +++++
T Consensus 168 IH~ahGyLl~qFLSp~~-N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~-~~~~~ 245 (341)
T PF00724_consen 168 IHAAHGYLLSQFLSPLT-NRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIE-IAKLL 245 (341)
T ss_dssp EEESTTSHHHHHHSTTT----SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHH-HHHHH
T ss_pred ecccchhhhhheeeecc-CCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHH-HHHHH
Confidence 9987 5764 58999999999999999999999999987 4677777776211 1122445543 34566
Q ss_pred hcCCccEEEEccCcccc--CCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017148 163 SLSPTRHFIIHSRKALL--NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~--~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
++.|+|.+.++...... .....................+++ .+++|||++|+|.+++.++++++ ..||+|.+||++
T Consensus 246 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~-~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ 324 (341)
T PF00724_consen 246 EELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKK-AVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPL 324 (341)
T ss_dssp HHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHH-HHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHH
T ss_pred HHHhhhhccccccccccccccccccccccccchhhhhhhhhhh-hcCceEEEEeeecchhhhHHHHhcCCceEeeccHHH
Confidence 77889988765432110 000000000111111234444444 45899999999999999999999 669999999999
Q ss_pred hhCCchhh
Q 017148 240 YQNPWYTL 247 (376)
Q Consensus 240 l~~P~lf~ 247 (376)
++||+|..
T Consensus 325 ladPd~~~ 332 (341)
T PF00724_consen 325 LADPDLPN 332 (341)
T ss_dssp HH-TTHHH
T ss_pred HhCchHHH
Confidence 99999864
No 30
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.97 E-value=1.2e-29 Score=244.04 Aligned_cols=231 Identities=20% Similarity=0.273 Sum_probs=172.4
Q ss_pred CCCeecCCcEEEcc-CCCCChHHHHHHHHHhCCCcEEEecceeeccccccc-------------------chhhhhhc--
Q 017148 2 VARQYLPPWFSVAP-MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-------------------GNLDRFLA-- 59 (376)
Q Consensus 2 i~~~~l~nri~lAP-M~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-------------------~~~~~~~~-- 59 (376)
+.|++|+||+++|. +.+.+. .+...+... |+|.++|..++.+...... ...+.+++
T Consensus 6 ~~G~~~~nPv~~aag~~~~~~-~~~~~~~~~-g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~ 83 (301)
T PRK07259 6 LPGLKLKNPVMPASGTFGFGG-EYARFYDLN-GLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEE 83 (301)
T ss_pred ECCEECCCCcEECCcCCCCCH-HHHHHhhhc-CCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHH
Confidence 46899999999997 455555 444434444 4899999988766422110 01112221
Q ss_pred ---cCCCCCCEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017148 60 ---FSPEQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 60 ---~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
....+.|+++||+|+++++|+++|++++++| +|+||||++||+.. ++ |..+.++++++.+++++|++.+++
T Consensus 84 ~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~----~g-g~~~~~~~~~~~eiv~~vr~~~~~ 158 (301)
T PRK07259 84 LPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK----HG-GMAFGTDPELAYEVVKAVKEVVKV 158 (301)
T ss_pred HHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC----CC-ccccccCHHHHHHHHHHHHHhcCC
Confidence 1234689999999999999999999999999 99999999999842 22 677889999999999999999999
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccC------------CCCCCCCCCCCcccHHHHHHHHh
Q 017148 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN------------GISPAENRTIPPLKYEYYYALLR 203 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~------------g~~~~~~~~~~~~~~~~v~~~~~ 203 (376)
||+||++...+ +..+ +++.++++|+|.|++++++.... +..+.....+.+..+++++++++
T Consensus 159 pv~vKl~~~~~---~~~~----~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~ 231 (301)
T PRK07259 159 PVIVKLTPNVT---DIVE----IAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQ 231 (301)
T ss_pred CEEEEcCCCch---hHHH----HHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHH
Confidence 99999997543 2223 34556789999999865432100 00111123345566888888887
Q ss_pred hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017148 204 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 204 ~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
.+ ++|||++|||.|++|+.++++.|||+||+||+++.+|++|.
T Consensus 232 ~~-~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~ 274 (301)
T PRK07259 232 AV-DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFP 274 (301)
T ss_pred hC-CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHH
Confidence 65 89999999999999999999999999999999999999864
No 31
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.5e-29 Score=239.92 Aligned_cols=271 Identities=21% Similarity=0.331 Sum_probs=214.1
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhh----------------hhhccCCCCCC
Q 017148 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLD----------------RFLAFSPEQHP 66 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~----------------~~~~~~~~~~p 66 (376)
..+...|.+++|||+.+++.+.|.++-++| ++++|||-+....++....... -+.....+...
T Consensus 5 ~~l~y~nk~iLApMvr~G~lpmrLLal~~G-adlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~r 83 (477)
T KOG2334|consen 5 SSLFYRNKLILAPMVRAGELPMRLLALQYG-ADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSR 83 (477)
T ss_pred hhhhhcCcEeeehHHHhccchHHHHHHHhc-cceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCe
Confidence 345678999999999999999999999997 8999999888777765432111 11112334557
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
+++|++.++++--.++|+.+..- ..+||+|||||-..-+ +++.|++|+.+|+.+..|+.++.+...+|+++|||+ .+
T Consensus 84 lilQ~gT~sa~lA~e~A~lv~nD-vsgidiN~gCpK~fSi-~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~-L~ 160 (477)
T KOG2334|consen 84 LILQIGTASAELALEAAKLVDND-VSGIDINMGCPKEFSI-HGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRL-LD 160 (477)
T ss_pred EEEEecCCcHHHHHHHHHHhhcc-cccccccCCCCCcccc-ccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEe-cC
Confidence 99999999999999999988774 6899999999987655 455799999999999999999999999999999996 44
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC---HHHHH
Q 017148 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT---VDEVN 223 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s---~~da~ 223 (376)
+.++. ++.+.+ +.+.|+.+|+||+|+... +...|..-++++++....+.||||.||++.+ ..|++
T Consensus 161 s~edt---L~lv~r-i~~tgi~ai~vh~rt~d~--------r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~ 228 (477)
T KOG2334|consen 161 SKEDT---LKLVKR-ICATGIAAITVHCRTRDE--------RNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIE 228 (477)
T ss_pred CcccH---HHHHHH-HHhcCCceEEEEeecccc--------CCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHH
Confidence 43433 333333 357999999999998532 2234445677888877766699999999999 66777
Q ss_pred HHHH-cCcCeeEEchHHhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 017148 224 AALR-KGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHF 299 (376)
Q Consensus 224 ~~l~-~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y 299 (376)
...+ +|+|+||++|++..||.+|.. .| ..++.+.++.|++++..+.++|++.+..+..+......+
T Consensus 229 ~~~~~~~~~~vmiAR~A~~n~SiF~~------eG----~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~~~ 295 (477)
T KOG2334|consen 229 DFQEKTGADSVMIARAAESNPSIFRE------EG----CLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQEG 295 (477)
T ss_pred HHHHHhccchhhhhHhhhcCCceeee------cC----CchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhhcc
Confidence 7777 899999999999999999853 23 356788999999999999999999787777666555444
No 32
>PLN02411 12-oxophytodienoate reductase
Probab=99.97 E-value=3.7e-29 Score=247.58 Aligned_cols=241 Identities=18% Similarity=0.160 Sum_probs=167.8
Q ss_pred CCCeecCCcEEEccCCC-------CChHHHHHHH-HHhCCCcEEEecceeeccccccc---------chhh---hhh-cc
Q 017148 2 VARQYLPPWFSVAPMMD-------WTDNHYRTLA-RLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL-AF 60 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-------~td~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~-~~ 60 (376)
||+++|||||++|||.. +|+....++. |+.|| |+++||.+.++...... ..+. ++. .+
T Consensus 18 ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~av 96 (391)
T PLN02411 18 MGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAV 96 (391)
T ss_pred ECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHH
Confidence 68899999999999964 4788888886 66787 99999998887432211 1111 222 36
Q ss_pred CCCCCCEEEEecCC----------------------------------------C------------HHHHHHHHHHHHH
Q 017148 61 SPEQHPIVLQIGGS----------------------------------------N------------LDNLAKATELANA 88 (376)
Q Consensus 61 ~~~~~p~~vQL~g~----------------------------------------~------------~~~~~~aa~~~~~ 88 (376)
|..+.++++||++. . .++|++||+++++
T Consensus 97 H~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~ 176 (391)
T PLN02411 97 HAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEVVEHYRQAALNAIR 176 (391)
T ss_pred HhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888899998520 0 2689999999999
Q ss_pred CCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecCCC-----CCCccHHH
Q 017148 89 YNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DDHDSYNQ 153 (376)
Q Consensus 89 ~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~g~-----~~~~~~~~ 153 (376)
+|||+||||++ +|.. |.|+|+|||+++||.+++.|||++||++++. .|.+|++..- .+....++
T Consensus 177 AGFDGVEIH~AhGYLl~QFLSp~t-N~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~ 255 (391)
T PLN02411 177 AGFDGIEIHGAHGYLIDQFLKDGI-NDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNL 255 (391)
T ss_pred cCCCEEEEccccchHHHHhCCCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhh
Confidence 99999999987 5775 5899999999999999999999999999853 4777776421 11112222
Q ss_pred ---HHHHHHHHhhcC--CccEEEEccCccccCCCCCCCCCCCCcccHH-HHHHHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017148 154 ---LCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 154 ---~~~~i~~~~e~~--Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
+++.+..+.... |+|+|+|+.+.....+..... ....+..+. +..++++ ..++|||++|+| +.++++++++
T Consensus 256 ~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~-~~~~~~~~~~~a~~ik~-~v~~pvi~~G~i-~~~~a~~~l~ 332 (391)
T PLN02411 256 GLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESG-RHGSEEEEAQLMRTLRR-AYQGTFMCSGGF-TRELGMQAVQ 332 (391)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccc-ccCCccchhHHHHHHHH-HcCCCEEEECCC-CHHHHHHHHH
Confidence 333333222123 599999987642111100000 000111122 3344444 458999999999 6799999999
Q ss_pred cC-cCeeEEchHHhhCCchhh
Q 017148 228 KG-AHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 228 ~G-ad~VmiGRa~l~~P~lf~ 247 (376)
.| ||+|.+||++++||+|..
T Consensus 333 ~g~aDlV~~gR~~iadPdl~~ 353 (391)
T PLN02411 333 QGDADLVSYGRLFISNPDLVL 353 (391)
T ss_pred cCCCCEEEECHHHHhCccHHH
Confidence 55 999999999999999864
No 33
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.97 E-value=4.4e-29 Score=244.90 Aligned_cols=231 Identities=15% Similarity=0.123 Sum_probs=171.0
Q ss_pred CCCeecCCcEEEccCCC---------CChHHHHHHHHHhCCCcEEEecceeeccccccc---------chhh---hhh-c
Q 017148 2 VARQYLPPWFSVAPMMD---------WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ---------GNLD---RFL-A 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~---------~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~---------~~~~---~~~-~ 59 (376)
||++++||||++|||.. .|+..++++.+.+| +|+++||.+.++...... ..+. ++. .
T Consensus 9 ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg-~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~ 87 (362)
T PRK10605 9 VGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRAS-AGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAG 87 (362)
T ss_pred ECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHhC-CCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHH
Confidence 68999999999999963 26678888876664 999999998886432211 1111 222 3
Q ss_pred cCCCCCCEEEEecCC------------------------------------------C------------HHHHHHHHHH
Q 017148 60 FSPEQHPIVLQIGGS------------------------------------------N------------LDNLAKATEL 85 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~------------------------------------------~------------~~~~~~aa~~ 85 (376)
+|..+.++++||++. . .++|++||++
T Consensus 88 vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~r 167 (362)
T PRK10605 88 VHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVNDFRQAIAN 167 (362)
T ss_pred HHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 688889999998641 0 2689999999
Q ss_pred HHHCCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccCc-cEEEEecCC-----CCCCcc
Q 017148 86 ANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG-----VDDHDS 150 (376)
Q Consensus 86 ~~~~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-pv~vKiR~g-----~~~~~~ 150 (376)
++++|||+||||++ +|.. |.|+|+|||+++||.+++.|||++||+.++. .|.+|+..- .+...+
T Consensus 168 A~~AGfDGVEIh~ahGyLl~qFLSp~~-N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~ 246 (362)
T PRK10605 168 AREAGFDLVELHSAHGYLLHQFLSPSS-NQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPN 246 (362)
T ss_pred HHHcCCCEEEEcccccchHHHhcCCcC-CCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCC
Confidence 99999999999987 5764 5899999999999999999999999999853 466666541 111234
Q ss_pred HHH-HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC
Q 017148 151 YNQ-LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 151 ~~~-~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
.+| .+++ ++.+++.|+|+|+|+.+... .+ .+.......++++. +++||+++|++ |++.++++++.|
T Consensus 247 ~~e~~~~~-~~~L~~~giD~i~vs~~~~~-~~---------~~~~~~~~~~ik~~-~~~pv~~~G~~-~~~~ae~~i~~G 313 (362)
T PRK10605 247 EEADALYL-IEQLGKRGIAYLHMSEPDWA-GG---------EPYSDAFREKVRAR-FHGVIIGAGAY-TAEKAETLIGKG 313 (362)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEecccccc-CC---------ccccHHHHHHHHHH-CCCCEEEeCCC-CHHHHHHHHHcC
Confidence 566 4554 55667899999999864311 00 01112333445444 48999999996 999999999954
Q ss_pred -cCeeEEchHHhhCCchhh
Q 017148 230 -AHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 230 -ad~VmiGRa~l~~P~lf~ 247 (376)
||+|++||++++||+|+.
T Consensus 314 ~~D~V~~gR~~iadPd~~~ 332 (362)
T PRK10605 314 LIDAVAFGRDYIANPDLVA 332 (362)
T ss_pred CCCEEEECHHhhhCccHHH
Confidence 999999999999999863
No 34
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.97 E-value=6.9e-29 Score=237.27 Aligned_cols=234 Identities=19% Similarity=0.207 Sum_probs=175.1
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeeccccccc-c---------------------------h
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-G---------------------------N 53 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~---------------------------~ 53 (376)
+.|++|+||+++|.....++..+.......| +|.++|..++.++...+. + .
T Consensus 3 ~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g-~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g 81 (289)
T cd02810 3 FLGLKLKNPFGVAAGPLLKTGELIARAAAAG-FGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLG 81 (289)
T ss_pred ECCEECCCCCEeCCCCCCCCHHHHHHHHHcC-CCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcC
Confidence 3589999999999877755666555454554 899999988866331110 0 0
Q ss_pred hhhhh----cc-CC-CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHH
Q 017148 54 LDRFL----AF-SP-EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127 (376)
Q Consensus 54 ~~~~~----~~-~~-~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~ 127 (376)
.+.++ .. +. .+.|+++||.|++++++.++++.++++|+|+||||++||+... |..++++++.+.++++
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~------~~~~~~~~~~~~eiv~ 155 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG------GRQLGQDPEAVANLLK 155 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC------CcccccCHHHHHHHHH
Confidence 11111 11 22 4789999999999999999999999999999999999998531 4447899999999999
Q ss_pred HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccC------------CCCCCCCCCCCcccH
Q 017148 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN------------GISPAENRTIPPLKY 195 (376)
Q Consensus 128 ~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~------------g~~~~~~~~~~~~~~ 195 (376)
++++.+++||+||++.+++. + ++.+ +++.++++|+|+|++|+++.... +..+.....+.+..+
T Consensus 156 ~vr~~~~~pv~vKl~~~~~~-~---~~~~-~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~ 230 (289)
T cd02810 156 AVKAAVDIPLLVKLSPYFDL-E---DIVE-LAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLAL 230 (289)
T ss_pred HHHHccCCCEEEEeCCCCCH-H---HHHH-HHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHH
Confidence 99999999999999987653 2 3333 24456789999999998753110 000001112334457
Q ss_pred HHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017148 196 EYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 196 ~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
++++++++.++ ++|||++|||.|++|+.++++.|||+||+||+++.| ||+|.
T Consensus 231 ~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~ 284 (289)
T cd02810 231 RWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIR 284 (289)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHH
Confidence 78888887765 899999999999999999999999999999999999 99974
No 35
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.96 E-value=3.3e-28 Score=244.13 Aligned_cols=229 Identities=18% Similarity=0.194 Sum_probs=171.9
Q ss_pred CCCeecCCcEEEccCCC-CChHHHHHHHHHhCCCcEEEecceeeccccccc-ch------------------------hh
Q 017148 2 VARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-GN------------------------LD 55 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~~------------------------~~ 55 (376)
+.|++|+|||++|.-.. .+...++.+.. . |+|.++|..++ ....... +. ..
T Consensus 8 ~~Gl~l~nPv~~aag~~~~~~~~~~~~~~-~-g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~~~~ 84 (420)
T PRK08318 8 FCGIKSPNPFWLASAPPTNKYYNVARAFE-A-GWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDRPLE 84 (420)
T ss_pred ECCEecCCCcEeCCcCCCCCHHHHHHHHH-h-CCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCcccccccCHH
Confidence 45899999999995422 23445555554 4 48888888776 3221111 00 01
Q ss_pred hhh----cc--CCCCCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHH
Q 017148 56 RFL----AF--SPEQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128 (376)
Q Consensus 56 ~~~----~~--~~~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~ 128 (376)
.++ .. ...+.|+++||+|. +++++.++|+.++++|+|+||||++||+ ++..++ +|+.++++++.+.+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~~~~-~g~~~~~~~~~~~~i~~~ 162 (420)
T PRK08318 85 VNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMSERG-MGSAVGQVPELVEMYTRW 162 (420)
T ss_pred HHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-CccccC-CcccccCCHHHHHHHHHH
Confidence 111 11 11257899999999 9999999999999999999999999999 445445 599999999999999999
Q ss_pred HhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE---------------------ccCccccCCCCCCCC
Q 017148 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII---------------------HSRKALLNGISPAEN 187 (376)
Q Consensus 129 v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v---------------------h~r~~~~~g~~~~~~ 187 (376)
+++.+++||+||+|+..++ +.++ +++++++|+|.|++ |+++. .+|+++
T Consensus 163 v~~~~~~Pv~vKl~p~~~~---~~~~----a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~-~gg~SG--- 231 (420)
T PRK08318 163 VKRGSRLPVIVKLTPNITD---IREP----ARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSS-HGGYCG--- 231 (420)
T ss_pred HHhccCCcEEEEcCCCccc---HHHH----HHHHHHCCCCEEEEecccCccccccccccCCCceecCCCC-cccccc---
Confidence 9999999999999975443 3333 45667899999994 33321 223333
Q ss_pred CCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchh
Q 017148 188 RTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYT 246 (376)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf 246 (376)
..+.|..|+.++++++.. .++|||++|||.|++|+.+++.+|||+||||||++. .|.++
T Consensus 232 ~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii 293 (420)
T PRK08318 232 PAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIV 293 (420)
T ss_pred hhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhH
Confidence 345677799999998865 279999999999999999999999999999999998 68775
No 36
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.96 E-value=1.3e-27 Score=228.77 Aligned_cols=233 Identities=19% Similarity=0.173 Sum_probs=168.7
Q ss_pred CCCeecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeecccccc-------------------cchhhhhh---
Q 017148 2 VARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRFL--- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-------------------~~~~~~~~--- 58 (376)
+.|++|+||+++|.-. +-+...++.+.. . |+|.+.|..++.++...+ +...+.++
T Consensus 3 ~~Gl~l~nPi~~Asg~~~~~~e~~~~~~~-~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i 80 (294)
T cd04741 3 PPGLTISPPLMNAAGPWCTTLEDLLELAA-S-STGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYI 80 (294)
T ss_pred cCCeeCCCCCEECCCCCCCCHHHHHHHHH-c-CCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHH
Confidence 4689999999999765 344455666544 4 589999988876533211 01111111
Q ss_pred -cc----CCCCCCEEEEecCCCHHHHHHHHHHHHHC---CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh
Q 017148 59 -AF----SPEQHPIVLQIGGSNLDNLAKATELANAY---NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130 (376)
Q Consensus 59 -~~----~~~~~p~~vQL~g~~~~~~~~aa~~~~~~---G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~ 130 (376)
.. +..+.|+++||+|+ ++++.++++.+++. |+|+||||++||+.. + +..+..+++.+.+++++++
T Consensus 81 ~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~----~--~~~~~~~~~~~~~i~~~v~ 153 (294)
T cd04741 81 RTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP----G--KPPPAYDFDATLEYLTAVK 153 (294)
T ss_pred HHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC----C--cccccCCHHHHHHHHHHHH
Confidence 11 12578999999999 99999999988875 699999999999842 1 2345679999999999999
Q ss_pred cccCccEEEEecCCCCCCccHHHHHHHHHHHhhcC--CccEEEE----------cc-Ccc-cc---CCCCCCCCCCCCcc
Q 017148 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFII----------HS-RKA-LL---NGISPAENRTIPPL 193 (376)
Q Consensus 131 ~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~--Gvd~I~v----------h~-r~~-~~---~g~~~~~~~~~~~~ 193 (376)
+.+++||+||+|++++. .++.++ ++.+.++ |+|.|++ |. |+. .. .++++...+.+.+.
T Consensus 154 ~~~~iPv~vKl~p~~~~-~~~~~~----a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~ 228 (294)
T cd04741 154 AAYSIPVGVKTPPYTDP-AQFDTL----AEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPL 228 (294)
T ss_pred HhcCCCEEEEeCCCCCH-HHHHHH----HHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHH
Confidence 99999999999998743 223333 3344566 9999995 43 221 11 12222222345555
Q ss_pred cHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchhhH
Q 017148 194 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLG 248 (376)
Q Consensus 194 ~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~~ 248 (376)
.+..++++++... ++|||++|||.|++|+.+++.+|||+||+||+++. +||+|.+
T Consensus 229 al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~ 285 (294)
T cd04741 229 ALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFAR 285 (294)
T ss_pred HHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHH
Confidence 6777788877764 59999999999999999999999999999999995 9999743
No 37
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.95 E-value=9.4e-26 Score=218.67 Aligned_cols=227 Identities=14% Similarity=0.115 Sum_probs=164.7
Q ss_pred CCCeecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeeccccc---c------------------------cch
Q 017148 2 VARQYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIY---Q------------------------QGN 53 (376)
Q Consensus 2 i~~~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~---~------------------------~~~ 53 (376)
+.|++|+||+++|.=. +.+...++. +... |+|.++|..++.++..+ . +..
T Consensus 6 ~~Gl~l~nPv~~ASg~~~~~~e~~~~-~~~~-G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~g 83 (325)
T cd04739 6 YLGLSLKNPLVASASPLSRNLDNIRR-LEDA-GAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNLG 83 (325)
T ss_pred ECCEecCCCCEeCCcCCCCCHHHHHH-HHHC-CCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCcC
Confidence 4689999999997322 234445555 3344 48888888877553110 0 000
Q ss_pred hhhhh----cc-CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHH
Q 017148 54 LDRFL----AF-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128 (376)
Q Consensus 54 ~~~~~----~~-~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~ 128 (376)
.+.++ .. ...+.|+++||+|+++++|.++++.++++|+|+||||++||..+ .+.+|+.+ ++.+.+++++
T Consensus 84 ~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~---~~~~g~~~---~~~~~eiv~~ 157 (325)
T cd04739 84 PEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD---PDISGAEV---EQRYLDILRA 157 (325)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC---CCcccchH---HHHHHHHHHH
Confidence 11111 11 12368999999999999999999999999999999999996422 24457654 4678999999
Q ss_pred HhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc------------CCCCCCCCCCCCcccHH
Q 017148 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPPLKYE 196 (376)
Q Consensus 129 v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~------------~g~~~~~~~~~~~~~~~ 196 (376)
+++.+++||+||+++.+++ +.++ ++.++++|+|+|++|++.... .|.++ ..+.+..++
T Consensus 158 v~~~~~iPv~vKl~p~~~~---~~~~----a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG---~~~~~~al~ 227 (325)
T cd04739 158 VKSAVTIPVAVKLSPFFSA---LAHM----AKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSS---PAEIRLPLR 227 (325)
T ss_pred HHhccCCCEEEEcCCCccC---HHHH----HHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCC---ccchhHHHH
Confidence 9999999999999986542 3333 345668999999999986211 11111 233445577
Q ss_pred HHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017148 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
+++++.+.. ++|||++|||.|++|+.+++.+|||+||+||+++.+ |.++.
T Consensus 228 ~v~~v~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~ 278 (325)
T cd04739 228 WIAILSGRV-KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIG 278 (325)
T ss_pred HHHHHHccc-CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHH
Confidence 888887754 899999999999999999999999999999999995 98753
No 38
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.95 E-value=4.7e-26 Score=221.14 Aligned_cols=229 Identities=16% Similarity=0.199 Sum_probs=166.8
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccc-cc--------------------cchhhhhh--
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-YQ--------------------QGNLDRFL-- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~-~~--------------------~~~~~~~~-- 58 (376)
+.|++++||+++|.-..-+...++.+. .. |+|.+.|..++.++-. .. +...+.++
T Consensus 43 ~~Gl~l~nPi~~AsG~~~~~~~~~~~~-~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~ 120 (327)
T cd04738 43 VFGLTFPNPVGLAAGFDKNAEAIDALL-AL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKR 120 (327)
T ss_pred ECCEECCCCCEeCcCCCCCHHHHHHHH-HC-CCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHH
Confidence 468999999999864333334455544 44 5899999888765211 10 00111111
Q ss_pred --ccCCCCCCEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHH
Q 017148 59 --AFSPEQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129 (376)
Q Consensus 59 --~~~~~~~p~~vQL~g~~-------~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v 129 (376)
.....+.|+++||+|++ .++|++.++.+.+. +|+||||++||+.. |.....+++.+.+++++|
T Consensus 121 l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~-ad~ielN~scP~~~-------g~~~~~~~~~~~~iv~av 192 (327)
T cd04738 121 LKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTP-------GLRDLQGKEALRELLTAV 192 (327)
T ss_pred HHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC-------ccccccCHHHHHHHHHHH
Confidence 11224689999999987 68899998888764 89999999999853 233468999999999999
Q ss_pred hcccC-----ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc------------CCCCCCCCCCCCc
Q 017148 130 AANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPP 192 (376)
Q Consensus 130 ~~~~~-----~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~------------~g~~~~~~~~~~~ 192 (376)
++.++ +||+||++.++++ +++.+ +++.++++|+|+|++|+++... +|+++ ..+.+
T Consensus 193 ~~~~~~~~~~~Pv~vKl~~~~~~-~~~~~----ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG---~~~~~ 264 (327)
T cd04738 193 KEERNKLGKKVPLLVKIAPDLSD-EELED----IADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG---APLKE 264 (327)
T ss_pred HHHHhhcccCCCeEEEeCCCCCH-HHHHH----HHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC---hhhhH
Confidence 99886 9999999987653 22333 3456778999999999976321 12222 23344
Q ss_pred ccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-CchhhH
Q 017148 193 LKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLG 248 (376)
Q Consensus 193 ~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~~ 248 (376)
..++.++++++... ++|||++|||.|++|+.+++.+|||+|||||+++.+ ||+|.+
T Consensus 265 ~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~ 322 (327)
T cd04738 265 RSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKR 322 (327)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHH
Confidence 55788888877653 799999999999999999999999999999999886 998743
No 39
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.94 E-value=1.4e-25 Score=219.16 Aligned_cols=227 Identities=16% Similarity=0.186 Sum_probs=165.6
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccc-ccc--------------------chhhhhh--
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-YQQ--------------------GNLDRFL-- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~-~~~--------------------~~~~~~~-- 58 (376)
+.|++|+||+++|.-..-+...++. +... |+|.+.|..++.+.-. ... ...+.++
T Consensus 53 ~~Gl~l~nPi~~AsG~~~~~~~~~~-~~~~-G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~ 130 (344)
T PRK05286 53 VMGLTFPNPVGLAAGFDKNGEAIDA-LGAL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAER 130 (344)
T ss_pred ECCEECCCCCEECCCCCCChHHHHH-HHHc-CCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHH
Confidence 3589999999998643323334444 3444 4899999988865221 110 0111121
Q ss_pred --ccCCCCCCEEEEecCC-------CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHH
Q 017148 59 --AFSPEQHPIVLQIGGS-------NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI 129 (376)
Q Consensus 59 --~~~~~~~p~~vQL~g~-------~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v 129 (376)
+.. .+.|++++|.++ ..++|++.++.+.+ ++|+||+|++||+.+ |.....+++.+.+++++|
T Consensus 131 l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~-------g~~~~~~~~~~~eiv~aV 201 (344)
T PRK05286 131 LKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTP-------GLRDLQYGEALDELLAAL 201 (344)
T ss_pred HHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCC-------CcccccCHHHHHHHHHHH
Confidence 112 467999999886 57899999998876 589999999999864 222368999999999999
Q ss_pred hcccC-----ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc------------CCCCCCCCCCCCc
Q 017148 130 AANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPP 192 (376)
Q Consensus 130 ~~~~~-----~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~------------~g~~~~~~~~~~~ 192 (376)
++.++ +||+||++.++++ +++.+ +++.++++|+|+|++|+++... +|.++ ..+.+
T Consensus 202 r~~~~~~~~~~PV~vKlsp~~~~-~~~~~----ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG---~~~~~ 273 (344)
T PRK05286 202 KEAQAELHGYVPLLVKIAPDLSD-EELDD----IADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG---RPLFE 273 (344)
T ss_pred HHHHhccccCCceEEEeCCCCCH-HHHHH----HHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc---HHHHH
Confidence 99887 9999999987653 22333 3456678999999999986321 12221 23345
Q ss_pred ccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017148 193 LKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 193 ~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
..+++++++++... ++|||++|||.|++|+.+++.+|||+||+||+++.+ ||+|.
T Consensus 274 ~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~ 330 (344)
T PRK05286 274 RSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVK 330 (344)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHH
Confidence 56778888877653 699999999999999999999999999999999875 99863
No 40
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.93 E-value=1.6e-24 Score=211.06 Aligned_cols=226 Identities=14% Similarity=0.101 Sum_probs=162.5
Q ss_pred CCCeecCCcEEEccCCC-CChHHHHHHHHHhCCCcEEEecceeeccccc----------------------------ccc
Q 017148 2 VARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIY----------------------------QQG 52 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~----------------------------~~~ 52 (376)
+.|++|+||+++|.-.. .+...++. +... |+|.++|..++.++... .+.
T Consensus 7 ~~Gl~l~nPv~~asg~~~~~~~~~~~-~~~~-g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~gl~n~ 84 (334)
T PRK07565 7 YLGLTLRNPLVASASPLSESVDNVKR-LEDA-GAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYFPEPAKFYV 84 (334)
T ss_pred ECCEecCCCCEecCcCCCCCHHHHHH-HHHC-CCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhhhhhhccCc
Confidence 46899999998875433 34445555 3344 48888888776432200 000
Q ss_pred hhhhhh----cc-CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHH
Q 017148 53 NLDRFL----AF-SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMS 127 (376)
Q Consensus 53 ~~~~~~----~~-~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~ 127 (376)
..+.++ .. ...+.|+++|++|.+++++.++++.++++|+|+||||++||... .+.+|.. ..+.+.++++
T Consensus 85 g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~---~~~~g~~---~~~~~~eil~ 158 (334)
T PRK07565 85 GPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD---PDISGAE---VEQRYLDILR 158 (334)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC---CCCcccc---HHHHHHHHHH
Confidence 111111 11 22358999999999999999999999999999999999997643 2333532 3456889999
Q ss_pred HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc------------CCCCCCCCCCCCcccH
Q 017148 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL------------NGISPAENRTIPPLKY 195 (376)
Q Consensus 128 ~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~------------~g~~~~~~~~~~~~~~ 195 (376)
++++.+++||+||++.++++ +.++ ++.++++|+|+|++|++.... .|.++ ..+.+..+
T Consensus 159 ~v~~~~~iPV~vKl~p~~~~---~~~~----a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg---~~~~~~al 228 (334)
T PRK07565 159 AVKSAVSIPVAVKLSPYFSN---LANM----AKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLST---PAELRLPL 228 (334)
T ss_pred HHHhccCCcEEEEeCCCchh---HHHH----HHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCC---chhhhHHH
Confidence 99999999999999986542 3333 445678999999999885211 01111 23344456
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchh
Q 017148 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 246 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 246 (376)
+.++++.+.. ++|||++|||+|++|+.+++.+|||+|||||+++.+ |.++
T Consensus 229 ~~v~~~~~~~-~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~ 279 (334)
T PRK07565 229 RWIAILSGRV-GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYI 279 (334)
T ss_pred HHHHHHHhhc-CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHH
Confidence 7788877764 899999999999999999999999999999999996 8764
No 41
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.91 E-value=2.5e-23 Score=203.99 Aligned_cols=234 Identities=16% Similarity=0.148 Sum_probs=168.9
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecc-c-ccc-----------------------cc---
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAET-I-IYQ-----------------------QG--- 52 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~-~-~~~-----------------------~~--- 52 (376)
+.|++|+||+++|.-...++.+. +++.. .| +|-++|..++.+. . ... +.
T Consensus 15 ~~Gl~l~NP~i~ASgp~t~~~e~~~~~~~-~g-~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~iGl~N~~~~ 92 (385)
T PLN02495 15 VNGLKMPNPFVIGSGPPGTNYTVMKRAFD-EG-WGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVIGWQNIELI 92 (385)
T ss_pred ECCEEcCCCcEeCCccCCCCHHHHHHHHh-cC-CeEEEeccccCCccccCCCCCeEEecCcccccccccccccccCcccc
Confidence 46899999999995544445555 55443 34 8888887766332 0 000 00
Q ss_pred ---hhhhhh----ccC-C-CCCCEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHH
Q 017148 53 ---NLDRFL----AFS-P-EQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFV 122 (376)
Q Consensus 53 ---~~~~~~----~~~-~-~~~p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~ 122 (376)
..+.++ ... + .+.|++++|.+ .++++|.+.+++++++|+|+||||++||+....+. .|..+.++++.+
T Consensus 93 s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~--~g~~~gq~~e~~ 170 (385)
T PLN02495 93 SDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK--MGAAVGQDCDLL 170 (385)
T ss_pred cccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc--cchhhccCHHHH
Confidence 112222 121 2 25799999977 89999999999999999999999999999754443 488899999999
Q ss_pred HHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc------c-----------CCCCCC
Q 017148 123 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL------L-----------NGISPA 185 (376)
Q Consensus 123 ~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~------~-----------~g~~~~ 185 (376)
.+++++|++.+.+||.||+.+.+++ +.+ +++.++++|+|.|++..+... . .+.++-
T Consensus 171 ~~i~~~Vk~~~~iPv~vKLsPn~t~---i~~----ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGl 243 (385)
T PLN02495 171 EEVCGWINAKATVPVWAKMTPNITD---ITQ----PARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGY 243 (385)
T ss_pred HHHHHHHHHhhcCceEEEeCCChhh---HHH----HHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCc
Confidence 9999999999999999999986554 333 345566899999998654320 0 011111
Q ss_pred CCCCCCcccHHHHHHHHhhCC-----CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchh
Q 017148 186 ENRTIPPLKYEYYYALLRDFP-----DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYT 246 (376)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~-----~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf 246 (376)
.+..+.|..+..++++.+... ++|||++|||.|++|+.+++..||+.||++++++.+ |.++
T Consensus 244 SG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi 310 (385)
T PLN02495 244 SSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLV 310 (385)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHH
Confidence 123355555556666666532 599999999999999999999999999999999999 8875
No 42
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.91 E-value=1.2e-22 Score=194.95 Aligned_cols=194 Identities=15% Similarity=0.133 Sum_probs=144.4
Q ss_pred CCeecCCcEEEccCCCCC------hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-C
Q 017148 3 ARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-N 75 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~t------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~ 75 (376)
.+.+++.|+++|||++.+ +..++..+.++| ..++++++... ..+.+... .+.|+++||++. +
T Consensus 59 lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g-~~~~~~~~~~~--------~~~~i~~~--~~~~~~~ql~~~~~ 127 (299)
T cd02809 59 LGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAG-IPFTLSTVSTT--------SLEEVAAA--APGPRWFQLYVPRD 127 (299)
T ss_pred CCeecCCCeeeCcccccccCCchHHHHHHHHHHHcC-CCEEecCCCcC--------CHHHHHHh--cCCCeEEEEeecCC
Confidence 466788999999998764 568888888887 45666665521 11222222 237999999986 8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
++.+.++++.+++.|+|+|++|++||..... ...++++++++.++.||++|.... .++
T Consensus 128 ~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~--------------~~~~~i~~l~~~~~~pvivK~v~s------~~~-- 185 (299)
T cd02809 128 REITEDLLRRAEAAGYKALVLTVDTPVLGRR--------------LTWDDLAWLRSQWKGPLILKGILT------PED-- 185 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--------------CCHHHHHHHHHhcCCCEEEeecCC------HHH--
Confidence 9999999999999999999999999975311 244778888888889999996532 222
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017148 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
++.++++|+|+|+||++...... ..+..++.+.++++... ++|||++|||+++.|+.+++..|||+||
T Consensus 186 ---a~~a~~~G~d~I~v~~~gG~~~~--------~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ 254 (299)
T cd02809 186 ---ALRAVDAGADGIVVSNHGGRQLD--------GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVL 254 (299)
T ss_pred ---HHHHHHCCCCEEEEcCCCCCCCC--------CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 23456899999999764321110 11234788888877654 6999999999999999999999999999
Q ss_pred EchHHh
Q 017148 235 VGRAAY 240 (376)
Q Consensus 235 iGRa~l 240 (376)
+||+++
T Consensus 255 ig~~~l 260 (299)
T cd02809 255 IGRPFL 260 (299)
T ss_pred EcHHHH
Confidence 999443
No 43
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.90 E-value=2.1e-22 Score=193.98 Aligned_cols=233 Identities=16% Similarity=0.136 Sum_probs=166.9
Q ss_pred CCCeecCCcEEEccCCC-CChHHHHHHHHHhCCCcEEEecceeecccccc-------------------cchhhhhh---
Q 017148 2 VARQYLPPWFSVAPMMD-WTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-------------------QGNLDRFL--- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~-~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-------------------~~~~~~~~--- 58 (376)
+.+++|+||+++|.-.. .+...++. +...| +|.+.|..++.+....+ +...+.++
T Consensus 6 ~~Gl~l~NPv~~AsG~~~~~~e~~~~-~~~~g-~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i 83 (310)
T PRK02506 6 IAGFKFDNCLMNAAGVYCMTKEELEE-VEASA-AGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYV 83 (310)
T ss_pred ECCEECCCCCEeCCCCCCCCHHHHHH-HHHcC-CcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHH
Confidence 46899999999997655 34555665 44454 89999988876632110 01111111
Q ss_pred -ccCC--CCCCEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017148 59 -AFSP--EQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 59 -~~~~--~~~p~~vQL~g~~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
.... .+.|++++|.|.+++++.+.|+.++++| +|+||||++||+.. . +..+-.+++.+.+++++|++.+.
T Consensus 84 ~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~--~----~~~~g~d~~~~~~i~~~v~~~~~ 157 (310)
T PRK02506 84 LELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP--G----KPQIAYDFETTEQILEEVFTYFT 157 (310)
T ss_pred HHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC--C----ccccccCHHHHHHHHHHHHHhcC
Confidence 1112 3589999999999999999999999998 89999999999842 1 33334689999999999999999
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc------------Cccc---cCCCCCCCCCCCCcccHHHHH
Q 017148 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS------------RKAL---LNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~------------r~~~---~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+||.||+++.++. . ++.+. +..+.+.|++.|+.-. ++.. ..+.++-.++.+.|.....++
T Consensus 158 ~Pv~vKlsp~~~~-~---~~a~~-~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~ 232 (310)
T PRK02506 158 KPLGVKLPPYFDI-V---HFDQA-AAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVR 232 (310)
T ss_pred CccEEecCCCCCH-H---HHHHH-HHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHH
Confidence 9999999997632 2 33322 2233456777654332 1111 111222233567777788888
Q ss_pred HHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh-CCchhh
Q 017148 200 ALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTL 247 (376)
Q Consensus 200 ~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~-~P~lf~ 247 (376)
++.+... ++|||++|||.|.+|+.+++..|||+||++++++. +|.+|.
T Consensus 233 ~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~ 282 (310)
T PRK02506 233 AFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFE 282 (310)
T ss_pred HHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHH
Confidence 8887763 79999999999999999999999999999999998 698863
No 44
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.90 E-value=3.8e-22 Score=189.36 Aligned_cols=228 Identities=23% Similarity=0.300 Sum_probs=170.8
Q ss_pred CCCeecCCcEEEccCCCC-ChHHHHHHHHHhCCCcEEEecceeeccccccc-c--------------------hhhhhhc
Q 017148 2 VARQYLPPWFSVAPMMDW-TDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-G--------------------NLDRFLA 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~-td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~--------------------~~~~~~~ 59 (376)
+-|+++|||+++|.-... +...++.+. +.| +|.+.|..++.++..... + ..+.+++
T Consensus 6 ~~Gl~f~NPl~lAaG~~~~~~~~~~~~~-~~g-~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~~~~ 83 (310)
T COG0167 6 ILGLKFPNPLGLAAGFDGKNGEELDALA-ALG-FGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADAFLE 83 (310)
T ss_pred ecceecCCCCeEcccCCccCHHHHHHHH-hcC-CceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCCchhHHHHHH
Confidence 458999999999876653 344444443 344 788888888876322111 0 0111111
Q ss_pred ----cC----CCCCCEEEEecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh
Q 017148 60 ----FS----PEQHPIVLQIGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130 (376)
Q Consensus 60 ----~~----~~~~p~~vQL~g~~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~ 130 (376)
.. +.+.+++.+..+...+++.+.+..+++++ +|+||+|.+||+.+ + |.++-.+++.+.+++++++
T Consensus 84 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~----g--~~~l~~~~e~l~~l~~~vk 157 (310)
T COG0167 84 ELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP----G--GRALGQDPELLEKLLEAVK 157 (310)
T ss_pred HHHhhhhccCCcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC----C--hhhhccCHHHHHHHHHHHH
Confidence 11 23456888888889999999999999998 89999999999843 2 6677789999999999999
Q ss_pred cccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc----------------ccCCCCCCCCCCCCccc
Q 017148 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------------LLNGISPAENRTIPPLK 194 (376)
Q Consensus 131 ~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~----------------~~~g~~~~~~~~~~~~~ 194 (376)
+.+.+||.||+.+.+ +++.+ +++.++++|+|.|++...+. ..+|.| .+.+.|..
T Consensus 158 ~~~~~Pv~vKl~P~~---~di~~----iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS---G~~ikp~a 227 (310)
T COG0167 158 AATKVPVFVKLAPNI---TDIDE----IAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS---GPPLKPIA 227 (310)
T ss_pred hcccCceEEEeCCCH---HHHHH----HHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC---cccchHHH
Confidence 999999999999832 23333 35566789999999864221 122333 35677777
Q ss_pred HHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017148 195 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 195 ~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
...++++.++.. ++|||++|||.|++||.+.+..||++||+|++++.+ |++|.
T Consensus 228 l~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~ 282 (310)
T COG0167 228 LRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVK 282 (310)
T ss_pred HHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHH
Confidence 889999988752 599999999999999999999999999999999999 99963
No 45
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.88 E-value=1.5e-21 Score=189.63 Aligned_cols=228 Identities=15% Similarity=0.165 Sum_probs=164.5
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccc-cccc--------------------hhhhhhc-
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETII-YQQG--------------------NLDRFLA- 59 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~-~~~~--------------------~~~~~~~- 59 (376)
+.|++|+|||++|.-..-+...++.+. .. |+|.+.+..++.++-. ...+ ..+.+++
T Consensus 50 ~~Gl~l~NPi~lAsG~~~~~~~~~~~~-~~-G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~ 127 (335)
T TIGR01036 50 VLGLKFPNPLGLAAGFDKDGEAIDALG-AM-GFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVER 127 (335)
T ss_pred ECCEECCCCcEeCCccCCCHHHHHHHH-hc-CCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHH
Confidence 357999999999765433334455544 34 5899999988865221 1100 1111111
Q ss_pred --cCCCCCCEEEEecCC-------CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh
Q 017148 60 --FSPEQHPIVLQIGGS-------NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA 130 (376)
Q Consensus 60 --~~~~~~p~~vQL~g~-------~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~ 130 (376)
-++.+.|+++++.++ ..++|++.++.+.+ .+|+||||.+||+.. |.....+++.+.+++++|+
T Consensus 128 i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~-------~~~~~~~~~~~~~i~~~V~ 199 (335)
T TIGR01036 128 LKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTP-------GLRDLQYKAELRDLLTAVK 199 (335)
T ss_pred HhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCC-------CcccccCHHHHHHHHHHHH
Confidence 134467999999876 57899999998887 489999999999852 2333478999999999999
Q ss_pred cccC-------ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc------------ccCCCCCCCCCCCC
Q 017148 131 ANTN-------VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------------LLNGISPAENRTIP 191 (376)
Q Consensus 131 ~~~~-------~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~------------~~~g~~~~~~~~~~ 191 (376)
+.++ +||.||+.+.+++ +++.++ ++.++++|+|.|++..+.. ..+|.|+ ..+.
T Consensus 200 ~~~~~~~~~~~~Pv~vKLsP~~~~-~~i~~i----a~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG---~~i~ 271 (335)
T TIGR01036 200 QEQDGLRRVHRVPVLVKIAPDLTE-SDLEDI----ADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSG---KPLQ 271 (335)
T ss_pred HHHHhhhhccCCceEEEeCCCCCH-HHHHHH----HHHHHHhCCcEEEEECCCCccccccCccccCCCCcccC---HHHH
Confidence 8876 9999999997653 234443 4455689999999876432 1223333 3455
Q ss_pred cccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cchhh
Q 017148 192 PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTL 247 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~ 247 (376)
+....+++++.+... ++|||++|||.|++|+.+++..|||+||+||+++.+ |+++.
T Consensus 272 p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~ 329 (335)
T TIGR01036 272 DKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVK 329 (335)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHH
Confidence 556777888777654 699999999999999999999999999999999885 99863
No 46
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.86 E-value=5e-21 Score=186.80 Aligned_cols=182 Identities=16% Similarity=0.227 Sum_probs=142.5
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC--CCHHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG--SNLDNL 79 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g--~~~~~~ 79 (376)
|+++.+++|+++|||+++||.+||.+|+++||.|+ ++++++.+...+. .++.+||++ ++++.
T Consensus 38 i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~~~----------~~~~~QI~g~~~~~~~- 101 (369)
T TIGR01304 38 IDAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHEDP----------DPAIAKIAEAYEEGDQ- 101 (369)
T ss_pred EcceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCCCH----------HHHHHHHhhcCCChHH-
Confidence 57788999999999999999999999999997777 6777766544332 345599999 56666
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
+++++++++.+++. .+|+++.++++++++.. |+||+|++.. ...+++
T Consensus 102 a~aa~~~~e~~~~~-----------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~~---~~~e~a---- 148 (369)
T TIGR01304 102 AAATRLLQELHAAP-----------------------LKPELLGERIAEVRDSG---VITAVRVSPQ---NAREIA---- 148 (369)
T ss_pred HHHHHHHHHcCCCc-----------------------cChHHHHHHHHHHHhcc---eEEEEecCCc---CHHHHH----
Confidence 89999999987654 36899999999999863 9999999532 344443
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
++++++|+|.|++|+|+..+...++. ..|..+.+++++. ++|||+ |+|.|.+++.+++++|||+||+||+.
T Consensus 149 ~~l~eAGad~I~ihgrt~~q~~~sg~-------~~p~~l~~~i~~~-~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~gg 219 (369)
T TIGR01304 149 PIVVKAGADLLVIQGTLVSAEHVSTS-------GEPLNLKEFIGEL-DVPVIA-GGVNDYTTALHLMRTGAAGVIVGPGG 219 (369)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCC-------CCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 34568999999999998543221111 1266677777765 899998 99999999999999999999999987
Q ss_pred hh
Q 017148 240 YQ 241 (376)
Q Consensus 240 l~ 241 (376)
-.
T Consensus 220 ~~ 221 (369)
T TIGR01304 220 AN 221 (369)
T ss_pred Cc
Confidence 54
No 47
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.86 E-value=1.7e-20 Score=179.95 Aligned_cols=229 Identities=19% Similarity=0.277 Sum_probs=156.1
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc-cc--------------------hhhhhh--
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ-QG--------------------NLDRFL-- 58 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~-~~--------------------~~~~~~-- 58 (376)
+.|++++||+++|.-..-+...++.+ ...| +|.++|..++.++.... .+ ..+.++
T Consensus 6 ~~Gl~l~nPi~~asG~~~~~~~~~~~-~~~G-~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n~g~~~~~~~ 83 (295)
T PF01180_consen 6 FCGLTLKNPIGLASGLDKNGEEIKRL-FDAG-FGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPNPGLEYYLER 83 (295)
T ss_dssp ETTEEESSSEEE-TTSSTSSHHHHHH-HHHS-SSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-BSHHHHHHHH
T ss_pred ECCEEcCCCcEECCcCCCCchhhhhh-hcCC-ccEEEeccccccccccccCCcEEeeccccccccccCCChHHHHHHHHH
Confidence 46899999999985322223344443 3556 89999998887543211 00 011111
Q ss_pred --c---cCC--CCCCEEEEecCCC---HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHH
Q 017148 59 --A---FSP--EQHPIVLQIGGSN---LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128 (376)
Q Consensus 59 --~---~~~--~~~p~~vQL~g~~---~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~ 128 (376)
. ... ...|+++++.+.. .++|.+.++.++ .|+|+||||++||+.. .+..+..+++...++++.
T Consensus 84 ~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~------~~~~~~~~~~~~~~i~~~ 156 (295)
T PF01180_consen 84 LRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP------GGRPFGQDPELVAEIVRA 156 (295)
T ss_dssp HHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST------TSGGGGGHHHHHHHHHHH
T ss_pred HHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC------CccccccCHHHHHHHHHH
Confidence 1 111 2568999999998 999999999988 6899999999999753 144556788999999999
Q ss_pred HhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc------------cc----cCCCCCCCCCCCCc
Q 017148 129 IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK------------AL----LNGISPAENRTIPP 192 (376)
Q Consensus 129 v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~------------~~----~~g~~~~~~~~~~~ 192 (376)
+++.+++||.||+....++.... .. +.. +.+.|++.|++-.+. .. .+|.++ +.+.|
T Consensus 157 v~~~~~~Pv~vKL~p~~~~~~~~-~~---~~~-~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG---~~i~p 228 (295)
T PF01180_consen 157 VREAVDIPVFVKLSPNFTDIEPF-AI---AAE-LAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSG---PAIRP 228 (295)
T ss_dssp HHHHHSSEEEEEE-STSSCHHHH-HH---HHH-HHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEE---GGGHH
T ss_pred HHhccCCCEEEEecCCCCchHHH-HH---HHH-hhccceeEEEEecCccCcccccchhcceeeccccCCcCc---hhhhh
Confidence 99988999999999976653211 11 222 236899999853321 11 112332 34556
Q ss_pred ccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH-hhCCchhh
Q 017148 193 LKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPWYTL 247 (376)
Q Consensus 193 ~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~-l~~P~lf~ 247 (376)
..+.+++++.+... ++|||++|||.|++|+.+++..|||.||+++++ +.+|+++.
T Consensus 229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~ 285 (295)
T PF01180_consen 229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIR 285 (295)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHH
T ss_pred HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHH
Confidence 66788888888764 599999999999999999999999999999999 56798863
No 48
>PLN02826 dihydroorotate dehydrogenase
Probab=99.84 E-value=3e-19 Score=176.88 Aligned_cols=227 Identities=15% Similarity=0.154 Sum_probs=161.5
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccc---------------------cchhh----h
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ---------------------QGNLD----R 56 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~---------------------~~~~~----~ 56 (376)
+.|++++|||.+|.-..-+...++.+.. .| .|.+.+..++..+-.-+ +.... .
T Consensus 78 ~~Gl~f~NPvglAAG~dkn~~~~~~l~~-lG-fG~vevgTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~~~~ 155 (409)
T PLN02826 78 VWGRTFSNPIGLAAGFDKNAEAVEGLLG-LG-FGFVEIGSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVAKR 155 (409)
T ss_pred ECCEECCCCCEECcccCCCHHHHHHHHh-cC-CCeEEeCCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHHHHH
Confidence 4589999999999865544555555543 44 88998888876421100 01011 1
Q ss_pred hhccCC-----------------------CCCCEEEEecCC-----CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCC
Q 017148 57 FLAFSP-----------------------EQHPIVLQIGGS-----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGH 108 (376)
Q Consensus 57 ~~~~~~-----------------------~~~p~~vQL~g~-----~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~ 108 (376)
+..... ...|++++|.++ .+++|.+.++.+.+. +|+|+||.+||+..
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~-aDylelNiScPNtp---- 230 (409)
T PLN02826 156 LGAQHGKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQY-ADYLVINVSSPNTP---- 230 (409)
T ss_pred HHHHhhhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhhh-CCEEEEECCCCCCC----
Confidence 111110 123899999877 579999999999874 79999999999853
Q ss_pred CCccccccCCHHHHHHHHHHHhcc---------cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc--
Q 017148 109 GCFGVSLMLDPKFVGEAMSVIAAN---------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-- 177 (376)
Q Consensus 109 g~yG~~l~~~~~~~~eiv~~v~~~---------~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-- 177 (376)
|...+.+++.+.+++++|++. ..+||.||+.+..++ +++.++ ++.+.++|+|.|++...+.
T Consensus 231 ---glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~-~di~~i----a~~a~~~G~dGIi~~NTt~~r 302 (409)
T PLN02826 231 ---GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSK-EDLEDI----AAVALALGIDGLIISNTTISR 302 (409)
T ss_pred ---CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCH-HHHHHH----HHHHHHcCCCEEEEEcccCcC
Confidence 223446788999999988643 468999999986553 233333 4456689999999976432
Q ss_pred -----------ccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-Cc
Q 017148 178 -----------LLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PW 244 (376)
Q Consensus 178 -----------~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~ 244 (376)
..+|.++ +.+.+...+.++++.+... ++|||++|||.|++|+.+++..||++||++++++.+ |+
T Consensus 303 ~~dl~~~~~~~~~GGlSG---~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~ 379 (409)
T PLN02826 303 PDSVLGHPHADEAGGLSG---KPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPA 379 (409)
T ss_pred ccchhcccccccCCCcCC---ccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHH
Confidence 1223333 3455666788888887654 699999999999999999999999999999999985 88
Q ss_pred hh
Q 017148 245 YT 246 (376)
Q Consensus 245 lf 246 (376)
++
T Consensus 380 ~i 381 (409)
T PLN02826 380 LI 381 (409)
T ss_pred HH
Confidence 64
No 49
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.79 E-value=5.8e-18 Score=164.75 Aligned_cols=222 Identities=18% Similarity=0.136 Sum_probs=137.8
Q ss_pred CCeecCCcEEEccCCCCC------hHHHHHHHHHhCCCcEEEecceeecccccccchhhhh--hccCCCCCCEEEEecCC
Q 017148 3 ARQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRF--LAFSPEQHPIVLQIGGS 74 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~t------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~--~~~~~~~~p~~vQL~g~ 74 (376)
-|.++++|+++|||+|.+ +..+...+++.| ..+.+... .+ . +........+ ++-...+.|++.+|+..
T Consensus 48 ~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g-~~~~~Gs~-~~-~-~~~~~~~~~~~~vr~~~~~~p~i~nl~~~ 123 (333)
T TIGR02151 48 LGKRLKAPFYINAMTGGSEEAGKINRNLARAARELG-IPMGVGSQ-RA-A-LKDPETADTFEVVREEAPNGPLIANIGAP 123 (333)
T ss_pred CCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcC-CCeEEcCc-hh-h-ccChhhHhHHHHHHHhCCCCcEEeecCch
Confidence 357799999999999999 555666778887 44443321 11 1 1111111111 12223578999999864
Q ss_pred CHHH--HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHH
Q 017148 75 NLDN--LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~--~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~ 152 (376)
.... ..++.+.++..++|+++||+.|++..+. ...+ .+.+...+.++++++.+++||.||.. |.. .+.
T Consensus 124 ~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~-p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~-g~g--~~~- 193 (333)
T TIGR02151 124 QLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQ-PEGD-----RNFKGWLEKIAEICSQLSVPVIVKEV-GFG--ISK- 193 (333)
T ss_pred hhccccHHHHHHHHHHhcCCCEEEcCcccccccC-CCCC-----cCHHHHHHHHHHHHHhcCCCEEEEec-CCC--CCH-
Confidence 3211 2233333444467999999999886433 2221 23456779999999999999999976 332 122
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCC----CCCCCC---CCCCc---ccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNG----ISPAEN---RTIPP---LKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g----~~~~~~---~~~~~---~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
+. ++.++++|+|+|+|||+.....- ....+. ..... ...+.+.++++..+++|||++|||+++.|+
T Consensus 194 ~~----a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di 269 (333)
T TIGR02151 194 EV----AKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDV 269 (333)
T ss_pred HH----HHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHH
Confidence 22 34567899999999986421000 000000 00000 012344555442348999999999999999
Q ss_pred HHHHHcCcCeeEEchHHhhC
Q 017148 223 NAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 223 ~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+++..|||+|++||++|..
T Consensus 270 ~kaLalGAd~V~igr~~L~~ 289 (333)
T TIGR02151 270 AKAIALGADAVGMARPFLKA 289 (333)
T ss_pred HHHHHhCCCeehhhHHHHHH
Confidence 99999999999999998843
No 50
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.78 E-value=1.3e-17 Score=163.21 Aligned_cols=216 Identities=17% Similarity=0.104 Sum_probs=139.9
Q ss_pred CeecCCcEEEccCCCCCh------HHHHHHHHHhCCCcEEEecceeecccccccchhhhhh--ccCCCCCCEEEEecCCC
Q 017148 4 RQYLPPWFSVAPMMDWTD------NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL--AFSPEQHPIVLQIGGSN 75 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td------~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~--~~~~~~~p~~vQL~g~~ 75 (376)
|.+++.|++++||+|.++ ..+...++++| ..+.+..+-.. +. .......+. +-...+.|++++|+...
T Consensus 56 g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G-~~~~~Gs~~~~--~~-~~~~~~~~~~vr~~~p~~p~~aNl~~~~ 131 (352)
T PRK05437 56 GKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELG-IAMGVGSQRAA--LK-DPELADSFSVVRKVAPDGLLFANLGAVQ 131 (352)
T ss_pred CceecCCEEecccCCCChhHHHHHHHHHHHHHHcC-CCeEecccHhh--cc-ChhhHHHHHHHHHHCCCceEEeecCccc
Confidence 567899999999999987 44455677776 55544443110 11 111111111 11123779999888643
Q ss_pred -----HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCcc
Q 017148 76 -----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 76 -----~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~ 150 (376)
++.+.++.+. .++|+++||++||+.-+.. ..+ .+.+.+.+.++++++.+++||.||... .. .+
T Consensus 132 ~~~~~~~~~~~~~~~---~~adal~l~l~~~qe~~~p-~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g-~g--~s 199 (352)
T PRK05437 132 LYGYGVEEAQRAVEM---IEADALQIHLNPLQELVQP-EGD-----RDFRGWLDNIAEIVSALPVPVIVKEVG-FG--IS 199 (352)
T ss_pred cCCCCHHHHHHHHHh---cCCCcEEEeCccchhhcCC-CCc-----ccHHHHHHHHHHHHHhhCCCEEEEeCC-CC--Cc
Confidence 4555555444 4679999999998764332 211 345667899999999999999999873 21 22
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccc-------cCCC-----CCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGI-----SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-------~~g~-----~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
. +. ++.++++|+|+|+|+|+... +++. .......++ ..+.+.++.+..+++|||++|||++
T Consensus 200 ~-~~----a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p--t~~~l~~i~~~~~~ipvia~GGI~~ 272 (352)
T PRK05437 200 K-ET----AKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIP--TAQSLLEARSLLPDLPIIASGGIRN 272 (352)
T ss_pred H-HH----HHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCC--HHHHHHHHHHhcCCCeEEEECCCCC
Confidence 2 22 33456799999999876320 0110 000000111 2456666666545899999999999
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhC
Q 017148 219 VDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+.|+.+++..|||+|++||++|..
T Consensus 273 ~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 273 GLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred HHHHHHHHHcCCCEEEEhHHHHHH
Confidence 999999999999999999999863
No 51
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.77 E-value=1.3e-17 Score=161.89 Aligned_cols=218 Identities=15% Similarity=0.109 Sum_probs=136.7
Q ss_pred CCeecCCcEEEccCCCCC------hHHHHHHHHHhC---CCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC
Q 017148 3 ARQYLPPWFSVAPMMDWT------DNHYRTLARLIS---KHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG 73 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~t------d~~~r~~~~~~G---g~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g 73 (376)
-|.+++.||++|||+|.+ +..+...++..| +.|..-..+...+ .. .....++....+.|++++++.
T Consensus 47 ~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e-~~----~~~~~vr~~~~~~p~~~Nl~~ 121 (326)
T cd02811 47 LGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPE-LA----ESFTVVREAPPNGPLIANLGA 121 (326)
T ss_pred CCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChh-hh----hHHHHHHHhCCCceEEeecCc
Confidence 367899999999999987 456666677776 2222111111111 10 111112223346789999886
Q ss_pred C-----CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC
Q 017148 74 S-----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 148 (376)
Q Consensus 74 ~-----~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~ 148 (376)
. +++.+.++.+ ..++|+++||++||+......+. .+.+...+.++.+++.+++||.+|.... .
T Consensus 122 ~~~~~~~~~~~~~~i~---~~~adalel~l~~~q~~~~~~~~------~df~~~~~~i~~l~~~~~vPVivK~~g~-g-- 189 (326)
T cd02811 122 VQLNGYGVEEARRAVE---MIEADALAIHLNPLQEAVQPEGD------RDFRGWLERIEELVKALSVPVIVKEVGF-G-- 189 (326)
T ss_pred cccCCCCHHHHHHHHH---hcCCCcEEEeCcchHhhcCCCCC------cCHHHHHHHHHHHHHhcCCCEEEEecCC-C--
Confidence 4 3555555444 44689999999988753322211 3556677889999998999999998542 1
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccc-------cCCCCCCC--CCCC---CcccHHHHHHHHhhCCCCeEEEecCC
Q 017148 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGISPAE--NRTI---PPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-------~~g~~~~~--~~~~---~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
.+. +. ++.++++|+|+|+|+|+... +++..... .... .......+.++.+..+++|||++|||
T Consensus 190 ~s~-~~----a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGI 264 (326)
T cd02811 190 ISR-ET----AKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGI 264 (326)
T ss_pred CCH-HH----HHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCC
Confidence 222 22 34456899999999875210 01100000 0000 00113455566555448999999999
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 217 NTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++..|+.+++..|||+|++||++|..
T Consensus 265 r~~~dv~kal~lGAd~V~i~~~~L~~ 290 (326)
T cd02811 265 RNGLDIAKALALGADLVGMAGPFLKA 290 (326)
T ss_pred CCHHHHHHHHHhCCCEEEEcHHHHHH
Confidence 99999999999999999999998743
No 52
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.70 E-value=1.7e-16 Score=155.43 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=129.3
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
++++.++.|+++|||.++|+.+|+..++++||.|++..+.+. ..+....++..||++.++ .+
T Consensus 41 ~~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~---------------~~~~~~e~l~~qi~~~~~---~~ 102 (368)
T PRK08649 41 IDAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLW---------------TRYEDPEPILDEIASLGK---DE 102 (368)
T ss_pred ecceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeecccc---------------ccCCCHHHHHHHHHhcCc---HH
Confidence 467889999999999999999999999999998988744433 111223345667777666 45
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
+++.+++.+++ | .+|+++.++++++++. + +++|+|++. .+..+.+ +.
T Consensus 103 ~~~~~~~~~~~--------P---------------~~p~l~~~iv~~~~~~-~--V~v~vr~~~---~~~~e~a----~~ 149 (368)
T PRK08649 103 ATRLMQELYAE--------P---------------IKPELITERIAEIRDA-G--VIVAVSLSP---QRAQELA----PT 149 (368)
T ss_pred HHHHHHHhhcC--------C---------------CCHHHHHHHHHHHHhC-e--EEEEEecCC---cCHHHHH----HH
Confidence 66666665422 2 4589999999999986 3 666777632 2233443 34
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.++|+|.|++|+|+..+...... .+|..+.+++++. ++|||+ |+|.|.+++.+++++|||+||+|++-
T Consensus 150 l~eaGvd~I~vhgrt~~~~h~~~~-------~~~~~i~~~ik~~-~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 150 VVEAGVDLFVIQGTVVSAEHVSKE-------GEPLNLKEFIYEL-DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred HHHCCCCEEEEeccchhhhccCCc-------CCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 458999999999997532221111 0256566777765 899999 99999999999999999999999874
No 53
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.70 E-value=6.7e-16 Score=148.56 Aligned_cols=192 Identities=11% Similarity=0.022 Sum_probs=136.3
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHH
Q 017148 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 5 ~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~ 84 (376)
+.++.||++|||.++|+..+...+.+.||.|++-....+.+.+-..-...++ ..++|++++++...|. +.+..+
T Consensus 8 lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~-----~t~~pfgvn~~~~~~~-~~~~~~ 81 (307)
T TIGR03151 8 LGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKE-----LTDKPFGVNIMLLSPF-VDELVD 81 (307)
T ss_pred hCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHH-----hcCCCcEEeeecCCCC-HHHHHH
Confidence 4578899999999999999999999999999887665544433221111111 2468999999865443 344556
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhc
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 164 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~ 164 (376)
.+.+.|.+.|.+++|.|. ++++.+++. ++.+...+. +.++ ++.+++
T Consensus 82 ~~~~~~v~~v~~~~g~p~---------------------~~i~~lk~~-g~~v~~~v~-------s~~~-----a~~a~~ 127 (307)
T TIGR03151 82 LVIEEKVPVVTTGAGNPG---------------------KYIPRLKEN-GVKVIPVVA-------SVAL-----AKRMEK 127 (307)
T ss_pred HHHhCCCCEEEEcCCCcH---------------------HHHHHHHHc-CCEEEEEcC-------CHHH-----HHHHHH
Confidence 667789999988665542 345555543 556654332 2222 233567
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+|+|.|++||+.. +|+.+. ...+.++.++++.+ ++|||++|||.+++++.+++..|||+||+|+.++..+.
T Consensus 128 ~GaD~Ivv~g~ea--gGh~g~------~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 128 AGADAVIAEGMES--GGHIGE------LTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred cCCCEEEEECccc--CCCCCC------CcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccc
Confidence 9999999999854 233211 11378888888765 89999999999999999999999999999999998776
Q ss_pred h
Q 017148 245 Y 245 (376)
Q Consensus 245 l 245 (376)
-
T Consensus 199 s 199 (307)
T TIGR03151 199 C 199 (307)
T ss_pred c
Confidence 4
No 54
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.67 E-value=2e-15 Score=139.94 Aligned_cols=192 Identities=15% Similarity=0.148 Sum_probs=136.0
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCH-HHHHHHHHHH
Q 017148 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL-DNLAKATELA 86 (376)
Q Consensus 8 ~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~-~~~~~aa~~~ 86 (376)
++|+++|||+|+++..++..+.++|+.|++.+++++.+.+.+..+.... . .+.|+.+|++.+++ +.+.+.++.+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~---~--~~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRA---L--TDKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHH---h--cCCCeEEeEecCCCCcCHHHHHHHH
Confidence 5799999999999999999998899889988888876654332222221 1 14678899998875 4566777888
Q ss_pred HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCC
Q 017148 87 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP 166 (376)
Q Consensus 87 ~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~G 166 (376)
.++|+|+|.++.+++. ++++.+++ .++++.+++. +.+++ .. +.+.|
T Consensus 77 ~~~g~d~v~l~~~~~~---------------------~~~~~~~~-~~i~~i~~v~-------~~~~~----~~-~~~~g 122 (236)
T cd04730 77 LEEGVPVVSFSFGPPA---------------------EVVERLKA-AGIKVIPTVT-------SVEEA----RK-AEAAG 122 (236)
T ss_pred HhCCCCEEEEcCCCCH---------------------HHHHHHHH-cCCEEEEeCC-------CHHHH----HH-HHHcC
Confidence 8999999999865221 22333332 2567766542 12222 22 33589
Q ss_pred ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 167 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 167 vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+|+|.++++.. .|.... .....++.+.++++.. ++||+++|||.+++++.++++.|||+|++|++++..+..
T Consensus 123 ad~i~~~~~~~--~G~~~~----~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 123 ADALVAQGAEA--GGHRGT----FDIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEES 194 (236)
T ss_pred CCEEEEeCcCC--CCCCCc----cccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCccc
Confidence 99999988632 222111 0012367788777654 899999999999999999999999999999999988764
No 55
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.65 E-value=8.7e-15 Score=141.91 Aligned_cols=203 Identities=15% Similarity=0.063 Sum_probs=130.5
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHH
Q 017148 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKAT 83 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa 83 (376)
.+.++.||+.|||.++|+..++..+.++||.|++..+|.. +.+.. .+..+. +...+.+..+.+++... .+
T Consensus 30 ~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~~~------~i~~vk--~~l~v~~~~~~~~~~~~-~~ 99 (325)
T cd00381 30 NITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQAE------EVRKVK--GRLLVGAAVGTREDDKE-RA 99 (325)
T ss_pred ccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHHHH------HHHHhc--cCceEEEecCCChhHHH-HH
Confidence 4778999999999999999999998999999998876532 22111 111111 33444555666666554 44
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017148 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
+.+.++|+|.|+++++. | +++.+.++++.+++... +||.+ |- ..+.+.. +.+
T Consensus 100 ~~l~eagv~~I~vd~~~-----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~--v~t~~~A-----~~l 152 (325)
T cd00381 100 EALVEAGVDVIVIDSAH-----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GN--VVTAEAA-----RDL 152 (325)
T ss_pred HHHHhcCCCEEEEECCC-----------C-----CcHHHHHHHHHHHHHCCCceEEE----CC--CCCHHHH-----HHH
Confidence 45556899999998632 2 12456788888887652 45444 21 1233332 223
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
.++|+|+|.|+.+.... ...... .......+..+.++.+.. .++|||++|||.++.|+.++++.|||+||+||.++
T Consensus 153 ~~aGaD~I~vg~g~G~~-~~t~~~-~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa 230 (325)
T cd00381 153 IDAGADGVKVGIGPGSI-CTTRIV-TGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLA 230 (325)
T ss_pred HhcCCCEEEECCCCCcC-ccccee-CCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhc
Confidence 47999999997432110 000000 001111255555544322 26999999999999999999999999999999999
Q ss_pred hCCch
Q 017148 241 QNPWY 245 (376)
Q Consensus 241 ~~P~l 245 (376)
....-
T Consensus 231 ~t~Es 235 (325)
T cd00381 231 GTDES 235 (325)
T ss_pred ccccC
Confidence 87654
No 56
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.63 E-value=1.5e-14 Score=141.19 Aligned_cols=207 Identities=16% Similarity=0.159 Sum_probs=136.5
Q ss_pred CeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017148 4 RQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-|+++|||+.. .+....+.+.+.| ..++.+-+.+ ..++.+.+. ..+.+...||+- .|.
T Consensus 76 G~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g-~~~~lSt~ss--------~slEev~~~-~~~~~~wfQlY~~~dr 145 (367)
T TIGR02708 76 GHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFG-SIYTTSSYST--------ADLPEISEA-LNGTPHWFQFYMSKDD 145 (367)
T ss_pred CcccccccccCcHHHhhccCCcHHHHHHHHHHHcC-CCeeeccccc--------CCHHHHHhh-cCCCceEEEEeccCCH
Confidence 4568889999999753 2344555566665 4444332211 123333222 124689999997 456
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC----------------Cccccc-----cCCHHHHHHHHHHHhc
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------------CFGVSL-----MLDPKFVGEAMSVIAA 131 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g----------------~yG~~l-----~~~~~~~~eiv~~v~~ 131 (376)
+...+..++++++||++|-+...+|..-.. |++ ..+..+ ..++.+-.+.++.+++
T Consensus 146 ~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~ 225 (367)
T TIGR02708 146 GINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAG 225 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHH
Confidence 666788899999999999998887742100 000 001100 0123344577888888
Q ss_pred ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCC
Q 017148 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDL 208 (376)
Q Consensus 132 ~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~i 208 (376)
.+++||+|| |+.. .++ ++.+.++|+|+|.| ||+.+.+.+ +..++.+.++++.+ .++
T Consensus 226 ~~~~PvivK---Gv~~---~ed-----a~~a~~~Gvd~I~VS~HGGrq~~~~----------~a~~~~L~ei~~av~~~i 284 (367)
T TIGR02708 226 YSGLPVYVK---GPQC---PED-----ADRALKAGASGIWVTNHGGRQLDGG----------PAAFDSLQEVAEAVDKRV 284 (367)
T ss_pred hcCCCEEEe---CCCC---HHH-----HHHHHHcCcCEEEECCcCccCCCCC----------CcHHHHHHHHHHHhCCCC
Confidence 899999999 4332 222 23345799998865 777654432 22377788887665 369
Q ss_pred eEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 209 TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 209 pVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
|||++|||++..|+.+++..|||+|||||.+|.
T Consensus 285 ~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 285 PIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred cEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 999999999999999999999999999999764
No 57
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.60 E-value=3.3e-15 Score=139.05 Aligned_cols=157 Identities=21% Similarity=0.220 Sum_probs=104.8
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC-CC-----------
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV-DD----------- 147 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~-~~----------- 147 (376)
.++|++++++|||.|++|.|||++.+. .| |.+++++|+.+. +|++.+++||+.|+|.|. .+
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~-~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDi 99 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRA-AG--GVARMADPKMIE----EIMDAVSIPVMAKARIGHFVEAQILEALGVDY 99 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhh-cC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhHHHHHHHHHHcCCCE
Confidence 468999999999999999999998643 34 999999998877 566667899999999873 00
Q ss_pred ---Cc---cHHHHHHHH-----------------HHHhhcCCccEEEEcc--Ccc-----------------ccCCCCCC
Q 017148 148 ---HD---SYNQLCDFI-----------------YKVSSLSPTRHFIIHS--RKA-----------------LLNGISPA 185 (376)
Q Consensus 148 ---~~---~~~~~~~~i-----------------~~~~e~~Gvd~I~vh~--r~~-----------------~~~g~~~~ 185 (376)
.+ ..+++...+ +....+.|+|.|--.| +|. ...|+.+.
T Consensus 100 ID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~ 179 (293)
T PRK04180 100 IDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSED 179 (293)
T ss_pred EeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 00 011111000 0011234555554331 110 01222211
Q ss_pred CC---CCCCcccHHHHHHHHhhCCCCeEE--EecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 186 EN---RTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 186 ~~---~~~~~~~~~~v~~~~~~~~~ipVi--~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.. .......++.+.++++.. ++||+ +.|||.|++++..+++.|||+|++|++++..+.
T Consensus 180 ~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~d 242 (293)
T PRK04180 180 ELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGD 242 (293)
T ss_pred HHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCC
Confidence 10 001233588888888765 89998 999999999999999999999999999985544
No 58
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.59 E-value=6.7e-14 Score=136.30 Aligned_cols=213 Identities=15% Similarity=0.182 Sum_probs=135.8
Q ss_pred CeecCCcEEEccCCCCC------hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEec-CCCH
Q 017148 4 RQYLPPWFSVAPMMDWT------DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIG-GSNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~t------d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~~ 76 (376)
|.+++-|+++|||+... +....+.+.+.| ..++.+-+.+ . ..+.+.+....+.|+.+||+ ..+.
T Consensus 60 G~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~g-i~~~lss~s~-~-------s~e~v~~~~~~~~~~w~Qly~~~d~ 130 (344)
T cd02922 60 GHKVSLPFFISPAALAKLAHPDGELNLARAAGKHG-ILQMISTNAS-C-------SLEEIVDARPPDQPLFFQLYVNKDR 130 (344)
T ss_pred CcccCCceeeChHHHhhhCCchHHHHHHHHHHHcC-CCEEecCccc-C-------CHHHHHHhcCCCCcEEEEEeecCCH
Confidence 45788899999998422 223444455554 4443322221 1 22232222233468999997 4577
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccc----cCCC-----------------Cc-cccc---cCCHHHHHHHHHHHhc
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKV----AGHG-----------------CF-GVSL---MLDPKFVGEAMSVIAA 131 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v----~r~g-----------------~y-G~~l---~~~~~~~~eiv~~v~~ 131 (376)
+...+..++++++||++|-++...|..-. .|++ .. +... ..++....+.++.+++
T Consensus 131 ~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 210 (344)
T cd02922 131 TKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRK 210 (344)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHH
Confidence 88888899999999999999999884311 0000 00 0000 1134456788999999
Q ss_pred ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh---hC-CC
Q 017148 132 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR---DF-PD 207 (376)
Q Consensus 132 ~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~---~~-~~ 207 (376)
.++.||.|| |+.. .++ ++.+.++|+|+|+|++.. |... + ...++ .+.+.++.+ +. .+
T Consensus 211 ~~~~PvivK---gv~~---~~d-----A~~a~~~G~d~I~vsnhg----G~~~-d-~~~~~--~~~L~~i~~~~~~~~~~ 271 (344)
T cd02922 211 HTKLPIVLK---GVQT---VED-----AVLAAEYGVDGIVLSNHG----GRQL-D-TAPAP--IEVLLEIRKHCPEVFDK 271 (344)
T ss_pred hcCCcEEEE---cCCC---HHH-----HHHHHHcCCCEEEEECCC----cccC-C-CCCCH--HHHHHHHHHHHHHhCCC
Confidence 999999999 4432 222 223457999999996522 1110 1 11122 334444433 22 26
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 208 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+|||+.|||++..|+.+++..|||+|+|||++|..+.
T Consensus 272 ~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 272 IEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred ceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 9999999999999999999999999999999998764
No 59
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.59 E-value=2.4e-13 Score=120.98 Aligned_cols=195 Identities=14% Similarity=0.070 Sum_probs=131.8
Q ss_pred EEEccCCCCC-hHHHHHH-HHHhCCCcEEEecceeecccccccchhhhh-hccCCCCCCEEEEecCCCHHHHH-HHHHHH
Q 017148 11 FSVAPMMDWT-DNHYRTL-ARLISKHAWLYTEMLAAETIIYQQGNLDRF-LAFSPEQHPIVLQIGGSNLDNLA-KATELA 86 (376)
Q Consensus 11 i~lAPM~~~t-d~~~r~~-~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~-~~~~~~~~p~~vQL~g~~~~~~~-~aa~~~ 86 (376)
+++++|.+-. +.....+ ....||++++.++................+ ...+..+.|+++|++.+++..+. .+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 4678898865 3333333 234456888888877766432221110001 11234578999999988765543 346788
Q ss_pred HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcC
Q 017148 87 NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 87 ~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~ 165 (376)
.++|+|+|++|.+||.. +++..++++++++.+ +.|+.+|++...+.. +. . +.+.
T Consensus 81 ~~~g~d~v~l~~~~~~~---------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~----~~-----~-~~~~ 135 (200)
T cd04722 81 RAAGADGVEIHGAVGYL---------------AREDLELIRELREAVPDVKVVVKLSPTGELA----AA-----A-AEEA 135 (200)
T ss_pred HHcCCCEEEEeccCCcH---------------HHHHHHHHHHHHHhcCCceEEEEECCCCccc----hh-----h-HHHc
Confidence 99999999999998853 688899999999887 899999998743321 10 0 3468
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017148 166 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
|+|+|.++++.....+... .+.....+..+.+ .+++||+++|||.+++++.++++.|||+|++||
T Consensus 136 g~d~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDA------VPIADLLLILAKR-GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCEEEEcCCcCCCCCccC------chhHHHHHHHHHh-cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 9999999987643222110 0101123333333 458999999999999999999999999999997
No 60
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.58 E-value=3e-14 Score=138.72 Aligned_cols=209 Identities=17% Similarity=0.179 Sum_probs=137.1
Q ss_pred CeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017148 4 RQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-|+++|||+.. .+....+.+.+.| ..++.+-+.+ ...+++.... .+.+..+||+. .+.
T Consensus 68 G~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~g-i~~~lSt~s~--------~s~Eei~~~~-~~~~~wfQlY~~~d~ 137 (351)
T cd04737 68 GIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVG-SLFSISTYSN--------TSLEEIAKAS-NGGPKWFQLYMSKDD 137 (351)
T ss_pred CccccchhhhHHHHHHHhcCCchHHHHHHHHHHcC-CCEEecCCCC--------CCHHHHHHhc-CCCCeEEEEeecCCH
Confidence 4567889999999752 2334445555554 4444333211 1223332222 24579999996 466
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC-----------Cc------ccccc-----CCHHHHHHHHHHHh
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG-----------CF------GVSLM-----LDPKFVGEAMSVIA 130 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g-----------~y------G~~l~-----~~~~~~~eiv~~v~ 130 (376)
+...+..++++++||..|-+...+|..-.. |++ .+ |.... .++.+..+.++.++
T Consensus 138 ~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr 217 (351)
T cd04737 138 GFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIA 217 (351)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHH
Confidence 777778889999999999998877642110 000 00 00000 01234567888999
Q ss_pred cccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-C
Q 017148 131 ANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-D 207 (376)
Q Consensus 131 ~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ 207 (376)
+.+++||.+| |+.. .++ ++.+.++|+|+|+| ||+.+...+ +..++.+.++.+... +
T Consensus 218 ~~~~~PvivK---gv~~---~~d-----A~~a~~~G~d~I~vsnhGGr~ld~~----------~~~~~~l~~i~~a~~~~ 276 (351)
T cd04737 218 KISGLPVIVK---GIQS---PED-----ADVAINAGADGIWVSNHGGRQLDGG----------PASFDSLPEIAEAVNHR 276 (351)
T ss_pred HHhCCcEEEe---cCCC---HHH-----HHHHHHcCCCEEEEeCCCCccCCCC----------chHHHHHHHHHHHhCCC
Confidence 9899999999 3322 222 23345799999999 776553322 223677788776553 6
Q ss_pred CeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 208 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+|||++|||++..|+.+++..|||+|||||+++...
T Consensus 277 i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~l 312 (351)
T cd04737 277 VPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGL 312 (351)
T ss_pred CeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 999999999999999999999999999999887644
No 61
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.52 E-value=3.9e-13 Score=130.92 Aligned_cols=196 Identities=16% Similarity=0.156 Sum_probs=117.2
Q ss_pred eecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHH---
Q 017148 5 QYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAK--- 81 (376)
Q Consensus 5 ~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~--- 81 (376)
+.++.||++|||.++|+..+...+.++||.|.+-+.....+.+-....+++++ .++|++++++......-..
T Consensus 8 lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~-----t~~pfgvnl~~~~~~~~~~~~~ 82 (330)
T PF03060_consen 8 LGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRAL-----TDKPFGVNLFLPPPDPADEEDA 82 (330)
T ss_dssp HT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH------SS-EEEEEETTSTTHHHH-HH
T ss_pred hCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhh-----ccccccccccccCcccchhhhh
Confidence 45788999999999999999999999999999887666654443332233333 3449999998653211111
Q ss_pred --------HHHHHHH--------------CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017148 82 --------ATELANA--------------YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 82 --------aa~~~~~--------------~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
......+ .+.+.|-+.+|.|.. ++++.+++ .++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~--------------------~~i~~l~~-~gi~v~~ 141 (330)
T PF03060_consen 83 WPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPP--------------------EVIERLHA-AGIKVIP 141 (330)
T ss_dssp HHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-H--------------------HHHHHHHH-TT-EEEE
T ss_pred hhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchH--------------------HHHHHHHH-cCCcccc
Confidence 1122223 344578777777642 22334333 3566665
Q ss_pred EecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017148 140 KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 140 KiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
.+. +..+. +.+.+.|+|.|++.|... +|+.+. ... ..+.++.++.+.. ++|||+.|||.|.
T Consensus 142 ~v~-------s~~~A-----~~a~~~G~D~iv~qG~eA--GGH~g~---~~~-~~~~L~~~v~~~~-~iPViaAGGI~dg 202 (330)
T PF03060_consen 142 QVT-------SVREA-----RKAAKAGADAIVAQGPEA--GGHRGF---EVG-STFSLLPQVRDAV-DIPVIAAGGIADG 202 (330)
T ss_dssp EES-------SHHHH-----HHHHHTT-SEEEEE-TTS--SEE------SSG--HHHHHHHHHHH--SS-EEEESS--SH
T ss_pred ccC-------CHHHH-----HHhhhcCCCEEEEecccc--CCCCCc---ccc-ceeeHHHHHhhhc-CCcEEEecCcCCH
Confidence 432 23332 234579999999998764 333221 111 1256677776654 8999999999999
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 220 DEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++..++..|||+|++|+.++..+.-
T Consensus 203 ~~iaaal~lGA~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 203 RGIAAALALGADGVQMGTRFLATEES 228 (330)
T ss_dssp HHHHHHHHCT-SEEEESHHHHTSTTS
T ss_pred HHHHHHHHcCCCEeecCCeEEecccc
Confidence 99999999999999999999988764
No 62
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.46 E-value=2e-12 Score=126.05 Aligned_cols=205 Identities=14% Similarity=0.105 Sum_probs=136.9
Q ss_pred CeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHH
Q 017148 4 RQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLD 77 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~ 77 (376)
|.++.-||++||++.. .+....+.+.+.| ..++.+-+.+ ..++...+. .+.+...||+-.+.+
T Consensus 60 G~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~ss--------~siEeva~a--~~~~~wfQLY~~~r~ 128 (361)
T cd04736 60 GKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAG-IPFVLSTASN--------MSIEDVARQ--ADGDLWFQLYVVHRE 128 (361)
T ss_pred CccccccccccHHHHHhccCCcHHHHHHHHHHHcC-CcEEeeCCCC--------CCHHHHHhh--cCCCeEEEEEecCHH
Confidence 4567889999999642 3444555566654 5454433322 122333222 235799999998877
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC----------------------------------Ccc----cc-
Q 017148 78 NLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------------------------------CFG----VS- 114 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g----------------------------------~yG----~~- 114 (376)
...+..++++++||++|-++..+|..-.. |++ .+. ..
T Consensus 129 ~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~ 208 (361)
T cd04736 129 LAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDV 208 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccch
Confidence 77778889999999999998877753110 000 000 00
Q ss_pred ------c--cCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc--cCccccCCCCC
Q 017148 115 ------L--MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISP 184 (376)
Q Consensus 115 ------l--~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh--~r~~~~~g~~~ 184 (376)
+ .-++.+..+.++.+++.++.|+.+| |+- +.++.. .+.+.|+|.|.|+ |+++....
T Consensus 209 ~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV~---~~eda~-----~a~~~G~d~I~VSnhGGrqld~~--- 274 (361)
T cd04736 209 EVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GIV---TAEDAK-----RCIELGADGVILSNHGGRQLDDA--- 274 (361)
T ss_pred hhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cCC---CHHHHH-----HHHHCCcCEEEECCCCcCCCcCC---
Confidence 0 1134455678999999999999999 443 233322 2346999999984 54432111
Q ss_pred CCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+...+.+.++.+.+ ++|||+.|||+++.|+.+++..|||+||+||++|.
T Consensus 275 -------~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 275 -------IAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred -------ccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 11367778887765 79999999999999999999999999999999874
No 63
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.44 E-value=3.8e-12 Score=118.60 Aligned_cols=232 Identities=11% Similarity=0.131 Sum_probs=148.3
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeeccccccc-ch--------------------h--------
Q 017148 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQ-GN--------------------L-------- 54 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~-~~--------------------~-------- 54 (376)
+.+++|||.+|.-..-+....-.+.. . |+|++.+..++..+--.+. ++ .
T Consensus 90 g~~f~NPiglAAGfdk~~eaidgL~~-~-gfG~ieigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~ 167 (398)
T KOG1436|consen 90 GRKFSNPIGLAAGFDKNAEAIDGLAN-S-GFGFIEIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLR 167 (398)
T ss_pred hhhccCchhhhhccCcchHHHHHHHh-C-CCceEEecccccCCCCCCCCCceEecccccchhhccCCCcccHHHHHHHHH
Confidence 45789999999876666666666654 4 5889888877764321110 00 0
Q ss_pred -hhhhccCCCCCCEEEEecCCC-----HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHH
Q 017148 55 -DRFLAFSPEQHPIVLQIGGSN-----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSV 128 (376)
Q Consensus 55 -~~~~~~~~~~~p~~vQL~g~~-----~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~ 128 (376)
.+.....+...+++|+|.-+. ..+|++-.+..-+. +|...||.+||+..-.| .++.-..+.+.+..
T Consensus 168 ~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~-adylviNvSsPNtpGlr-------~lq~k~~L~~ll~~ 239 (398)
T KOG1436|consen 168 AKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPF-ADYLVINVSSPNTPGLR-------SLQKKSDLRKLLTK 239 (398)
T ss_pred HHHHhcCCCccccceeeeccccCCcchHHHHHHHhhhcccc-cceEEEeccCCCCcchh-------hhhhHHHHHHHHHH
Confidence 011223445567889987543 34555555554444 59999999999864222 22333334444444
Q ss_pred Hhcc-------cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----------cCCCCCCCCCCCC
Q 017148 129 IAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LNGISPAENRTIP 191 (376)
Q Consensus 129 v~~~-------~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~g~~~~~~~~~~ 191 (376)
+..+ ...|+.+|+.+.... .+.+| ++.+..+..+|.++|++-+-. ..++++-...++.
T Consensus 240 v~~a~~~~~~~~~~pvl~kiapDL~~-~el~d----ia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk 314 (398)
T KOG1436|consen 240 VVQARDKLPLGKKPPVLVKIAPDLSE-KELKD----IALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLK 314 (398)
T ss_pred HHHHHhccccCCCCceEEEeccchhH-HHHHH----HHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccc
Confidence 4322 245999999986544 22333 344456788999999865421 1122222334666
Q ss_pred cccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC-CchhhHhhh
Q 017148 192 PLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-PWYTLGHVD 251 (376)
Q Consensus 192 ~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~-P~lf~~~~~ 251 (376)
+.....++++.+.. ++||||++|||.|..||.+.+.+||..|++++++... |-+| ..|+
T Consensus 315 ~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~-~kIk 375 (398)
T KOG1436|consen 315 PISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAII-EKIK 375 (398)
T ss_pred hhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhH-HHHH
Confidence 66677777765543 4799999999999999999999999999999999876 7764 4444
No 64
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.44 E-value=1.5e-12 Score=121.27 Aligned_cols=121 Identities=15% Similarity=0.306 Sum_probs=92.7
Q ss_pred ccccccCCHHHHHHHHHHHhccc--CccE---EEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCC
Q 017148 111 FGVSLMLDPKFVGEAMSVIAANT--NVPV---SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~--~~pv---~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~ 185 (376)
.|++++++|+++.++++.+.+.+ ++++ .+|++ ||++.. .++.++ .+.+++.|++.|++|+++....+. +
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~--~~~~~~-~~~l~~~G~~~iiv~~~~~~g~~~-G- 176 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDG--GDLWEV-LERLDSAGCSRYVVTDVTKDGTLT-G- 176 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecC--ccHHHH-HHHHHhcCCCEEEEEeecCCCCcc-C-
Confidence 38899999999999999987664 4455 66664 887522 122333 334578999999999998642221 1
Q ss_pred CCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH---cCcCeeEEchHHhhCCch
Q 017148 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~---~Gad~VmiGRa~l~~P~l 245 (376)
+ +|+.+.++++. .++|||+||||.|.+|+.++.+ +|||+||+||+++.++.-
T Consensus 177 ------~-d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~ 231 (241)
T PRK14024 177 ------P-NLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFT 231 (241)
T ss_pred ------C-CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCC
Confidence 1 48888888876 4899999999999999999864 699999999999998754
No 65
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.43 E-value=9.6e-13 Score=128.94 Aligned_cols=206 Identities=20% Similarity=0.170 Sum_probs=131.1
Q ss_pred CCeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CC
Q 017148 3 ARQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SN 75 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~ 75 (376)
-|.++.-||++|||++. .+..+.+.|.+.| ..++. ...+... .+...... ..+.++||+- .+
T Consensus 53 lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~G-i~~~l-ss~s~~~-------~e~ia~~~--~~~~~~Qly~~~d 121 (356)
T PF01070_consen 53 LGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAG-IPMML-SSQSSAS-------LEEIAAAS--GGPLWFQLYPPRD 121 (356)
T ss_dssp TTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHT-SEEEE-ETTCSSC-------HHHHHHHC--TSEEEEEEEGBSS
T ss_pred CCccCCCCeEEcchhhhhhhccchHHHHHHHHhccC-cceec-cCCccCC-------HHHHHhhc--cCCeEEEEEEecC
Confidence 36788999999999863 2445556667775 43332 2222221 12222222 2789999975 47
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCcccc--------------------------C----------------CC----
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVA--------------------------G----------------HG---- 109 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~--------------------------r----------------~g---- 109 (376)
.+...+..++++++||+++-++..+|..-+. + ..
T Consensus 122 ~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 201 (356)
T PF01070_consen 122 RELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAA 201 (356)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHH
Confidence 7778888899999999999998765531000 0 00
Q ss_pred CccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc--cCccccCCCCCCCC
Q 017148 110 CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAEN 187 (376)
Q Consensus 110 ~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh--~r~~~~~g~~~~~~ 187 (376)
.|.... .++....+-++.+++.++.||.||--+ +.++. +.+.+.|+++|.|+ |+++...|.
T Consensus 202 ~~~~~~-~~~~~~w~~i~~~~~~~~~pvivKgv~------~~~da-----~~~~~~G~~~i~vs~hGGr~~d~~~----- 264 (356)
T PF01070_consen 202 RFVGSQ-FDPSLTWDDIEWIRKQWKLPVIVKGVL------SPEDA-----KRAVDAGVDGIDVSNHGGRQLDWGP----- 264 (356)
T ss_dssp HHHHCH-B-TT-SHHHHHHHHHHCSSEEEEEEE-------SHHHH-----HHHHHTT-SEEEEESGTGTSSTTS------
T ss_pred HHHHHh-cCCCCCHHHHHHHhcccCCceEEEecc------cHHHH-----HHHHhcCCCEEEecCCCcccCcccc-----
Confidence 000011 144566677899999999999999442 22232 23447999999994 666532221
Q ss_pred CCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 188 RTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 188 ~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
...+.+.++++.+. ++|||+.|||+++.|+.+++..|||+|.+||.+|.
T Consensus 265 -----~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 265 -----PTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp -----BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred -----ccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 12566677766543 79999999999999999999999999999998764
No 66
>PLN02535 glycolate oxidase
Probab=99.41 E-value=9e-12 Score=121.71 Aligned_cols=211 Identities=17% Similarity=0.143 Sum_probs=136.5
Q ss_pred CeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017148 4 RQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-|+++||++.. .+....+.+.+.| .-++.+-+ +. ...+.+.+. .+.+..+||+- .|.
T Consensus 68 G~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g-~~~~lSt~-s~-------~slEeva~~--~~~~~wfQlY~~~dr 136 (364)
T PLN02535 68 GYTISAPIMIAPTAMHKLAHPEGEIATARAAAACN-TIMVLSFM-AS-------CTVEEVASS--CNAVRFLQLYVYKRR 136 (364)
T ss_pred CccccccceechHHHhcccCcchHHHHHHHHHHcC-CCeEecCc-cc-------CCHHHHHhc--CCCCeEEEEeccCCH
Confidence 4677889999999752 2344445555554 43333222 11 122333222 24589999996 457
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC-------Ccc------------cc----c--cCCHHHHHHHHH
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG-------CFG------------VS----L--MLDPKFVGEAMS 127 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g-------~yG------------~~----l--~~~~~~~~eiv~ 127 (376)
+...+..++++++||.+|-+...+|..-.. |++ .+. .. . .-++.+-.+-++
T Consensus 137 ~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~ 216 (364)
T PLN02535 137 DIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIE 216 (364)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHH
Confidence 777888899999999999998888753111 110 000 00 0 013344567788
Q ss_pred HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-C
Q 017148 128 VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-P 206 (376)
Q Consensus 128 ~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~ 206 (376)
.+++.++.||.||--+ . .++ ++.+.++|+|+|.|++....+.+. .+.....+.++.+.+ .
T Consensus 217 ~lr~~~~~PvivKgV~---~---~~d-----A~~a~~~GvD~I~vsn~GGr~~d~--------~~~t~~~L~ev~~av~~ 277 (364)
T PLN02535 217 WLRSITNLPILIKGVL---T---RED-----AIKAVEVGVAGIIVSNHGARQLDY--------SPATISVLEEVVQAVGG 277 (364)
T ss_pred HHHhccCCCEEEecCC---C---HHH-----HHHHHhcCCCEEEEeCCCcCCCCC--------ChHHHHHHHHHHHHHhc
Confidence 9999899999999322 1 222 223447999999996432111111 122356677776653 3
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 207 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++|||+.|||.++.|+.++|..|||+|+|||+++..+.
T Consensus 278 ~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 278 RVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLA 315 (364)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhh
Confidence 69999999999999999999999999999999988665
No 67
>PLN02979 glycolate oxidase
Probab=99.40 E-value=9.7e-12 Score=120.50 Aligned_cols=208 Identities=16% Similarity=0.151 Sum_probs=134.1
Q ss_pred CeecCCcEEEccCCCC----Ch--HHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017148 4 RQYLPPWFSVAPMMDW----TD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~----td--~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-|+++||++.. .+ ....+.|.+.| .-++.+-+. ....+.+... .+.+...||+- .|.
T Consensus 65 G~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~ag-i~~~lSt~s--------s~slEeIa~a--~~~~~wfQLY~~~Dr 133 (366)
T PLN02979 65 GFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSSWA--------TSSVEEVAST--GPGIRFFQLYVYKNR 133 (366)
T ss_pred CcccCccceecHHHHHhhCCCChHHHHHHHHHHcC-CCeeeccCc--------CCCHHHHHhc--cCCCeEEEEeecCCH
Confidence 5678889999999742 33 34445555554 434332211 1223333222 24579999985 467
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC----------Cc-----c-----------cc--ccCCHHHHHH
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------CF-----G-----------VS--LMLDPKFVGE 124 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g----------~y-----G-----------~~--l~~~~~~~~e 124 (376)
+...+..++++++||++|-+...+|..-.. |++ .+ + .. -.-++....+
T Consensus 134 ~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~ 213 (366)
T PLN02979 134 NVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWK 213 (366)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHH
Confidence 777788899999999999998887764110 100 00 0 00 0112334457
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh
Q 017148 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 204 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 204 (376)
-++.+++.++.||.|| |+-. .++. +.+.++|+|+|.|++....+. + . .+...+.+.++.+.
T Consensus 214 dl~wlr~~~~~PvivK---gV~~---~~dA-----~~a~~~Gvd~I~VsnhGGrql-----d--~-~p~t~~~L~ei~~~ 274 (366)
T PLN02979 214 DVQWLQTITKLPILVK---GVLT---GEDA-----RIAIQAGAAGIIVSNHGARQL-----D--Y-VPATISALEEVVKA 274 (366)
T ss_pred HHHHHHhccCCCEEee---cCCC---HHHH-----HHHHhcCCCEEEECCCCcCCC-----C--C-chhHHHHHHHHHHH
Confidence 7899999999999999 3322 2222 233479999999965422111 1 1 12235666776655
Q ss_pred C-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 205 F-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 205 ~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+ .++|||+.|||++..|+.+++..|||+|++||.++.
T Consensus 275 ~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 275 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 3 369999999999999999999999999999999874
No 68
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.40 E-value=7e-12 Score=123.04 Aligned_cols=205 Identities=17% Similarity=0.164 Sum_probs=131.6
Q ss_pred CeecCCcEEEccCCCC------ChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017148 4 RQYLPPWFSVAPMMDW------TDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~------td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-||++||++.. .+....+.+.+.| ..++.+.+.+ ..++.+.+. .+.+...||+- .|.
T Consensus 66 G~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g-~~~~lSt~ss--------~slEeia~~--~~~~~wfQlY~~~Dr 134 (381)
T PRK11197 66 GEKLSMPVALAPVGLTGMYARRGEVQAARAADAKG-IPFTLSTVSV--------CPIEEVAPA--IKRPMWFQLYVLRDR 134 (381)
T ss_pred CcccccchhhChHHHhhccCCchHHHHHHHHHHcC-CCEEeeCCCc--------CCHHHHHhc--cCCCeEEEEEecCCH
Confidence 5577889999999742 3455555666665 4444433222 123333222 24589999974 467
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCCCccc-------------------------------cc------
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHGCFGV-------------------------------SL------ 115 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g~yG~-------------------------------~l------ 115 (376)
+...+..++++++||+.|-+...+|..-.. |++ |-. .+
T Consensus 135 ~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~-~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~ 213 (381)
T PRK11197 135 GFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSG-MSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGK 213 (381)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcC-CCCCCchhhhHHhhhcCchhhhhhccccCCCccccccccccc
Confidence 778888899999999999999888742111 000 000 00
Q ss_pred -cC------------CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc--CccccC
Q 017148 116 -ML------------DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLN 180 (376)
Q Consensus 116 -~~------------~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~ 180 (376)
.. ++.+-.+-++.+++.++.||.+| |+-. .++. +.+.+.|+|+|.|++ +++..
T Consensus 214 ~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivK---gV~s---~~dA-----~~a~~~Gvd~I~Vs~hGGr~~d- 281 (381)
T PRK11197 214 PTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIK---GILD---PEDA-----RDAVRFGADGIVVSNHGGRQLD- 281 (381)
T ss_pred ccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEE---ecCC---HHHH-----HHHHhCCCCEEEECCCCCCCCC-
Confidence 00 11122234788888899999999 3322 2232 223469999999954 43221
Q ss_pred CCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 181 GISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 181 g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+ . +...+.+.++.+.+ .++|||+.|||++..|+.++|..|||+|++||.++.
T Consensus 282 ~--------~-~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 282 G--------V-LSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred C--------c-ccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 1 1 11255666665544 379999999999999999999999999999999864
No 69
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.40 E-value=9.6e-12 Score=122.30 Aligned_cols=206 Identities=14% Similarity=0.163 Sum_probs=133.8
Q ss_pred CeecCCcEEEccCCCC----C--hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-CH
Q 017148 4 RQYLPPWFSVAPMMDW----T--DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-NL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~----t--d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~~ 76 (376)
|.++.-|+.+||++.. . +....+.|.++| .-++.+-+.+ ..++.+.+. ..+.+..+||+-. |.
T Consensus 81 G~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~g-i~~~lSt~ss--------~slEeIa~~-~~~~~~wfQlY~~~dr 150 (383)
T cd03332 81 GRTLAAPLLLAPIGVQELFHPDAELATARAAAELG-VPYILSTASS--------SSIEDVAAA-AGDAPRWFQLYWPKDD 150 (383)
T ss_pred CccccccceechHHHHHhcCCcHHHHHHHHHHHcC-CCeeecCCCC--------CCHHHHHhh-cCCCCcEEEeeCCCCH
Confidence 5678889999999752 2 344555566654 4444333322 122333222 1245799999875 67
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCCC---------------------c--c---------------cc
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHGC---------------------F--G---------------VS 114 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g~---------------------y--G---------------~~ 114 (376)
+...+..++++++||+.|-++...|..-.. |.+. + + +.
T Consensus 151 ~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (383)
T cd03332 151 DLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVAR 230 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHHH
Confidence 777888899999999999998666532100 0000 0 0 00
Q ss_pred c---cCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCC
Q 017148 115 L---MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRT 189 (376)
Q Consensus 115 l---~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~ 189 (376)
. .-++.+-.+-++.+++.++.||.+| |+.+ .++. +.+.+.|+|+|.|++ +.+...
T Consensus 231 ~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV~~---~~dA-----~~a~~~G~d~I~vsnhGGr~~d~--------- 290 (383)
T cd03332 231 FVSVFSGPSLTWEDLAFLREWTDLPIVLK---GILH---PDDA-----RRAVEAGVDGVVVSNHGGRQVDG--------- 290 (383)
T ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cCCC---HHHH-----HHHHHCCCCEEEEcCCCCcCCCC---------
Confidence 0 0123344577888888889999999 4432 2332 223469999999963 332211
Q ss_pred CCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 190 IPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
.+...+.+.++.+.+. ++|||+.|||++..|+.+++..|||+|++||.++
T Consensus 291 -~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 291 -SIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred -CcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 1223667777766553 5999999999999999999999999999999988
No 70
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.39 E-value=1.1e-11 Score=120.87 Aligned_cols=208 Identities=15% Similarity=0.156 Sum_probs=134.2
Q ss_pred CeecCCcEEEccCCCC----C--hHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCH
Q 017148 4 RQYLPPWFSVAPMMDW----T--DNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~----t--d~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~ 76 (376)
|.++.-||++||++.. . +....+.+.+.| ..++.+-+.+ ..++...+. .+.+..+||+- .|.
T Consensus 66 G~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~g-i~~~lSt~ss--------~slEeva~~--~~~~~wfQlY~~~Dr 134 (367)
T PLN02493 66 GFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG-TIMTLSSWAT--------SSVEEVAST--GPGIRFFQLYVYKNR 134 (367)
T ss_pred CccccccceechHHHHhhcCCchHHHHHHHHHHcC-CCeeecCccc--------CCHHHHHhc--CCCCcEEEEeecCCH
Confidence 5678889999999752 2 334455555554 4444433221 123333222 24579999985 467
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcccc----CCC----------Cc-----c-------cc------ccCCHHHHHH
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVA----GHG----------CF-----G-------VS------LMLDPKFVGE 124 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~----r~g----------~y-----G-------~~------l~~~~~~~~e 124 (376)
+...+..++++++||.++-+...+|..-.. |++ .+ | .. -.-++..-.+
T Consensus 135 ~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~ 214 (367)
T PLN02493 135 NVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWK 214 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHH
Confidence 777788899999999999998887754100 100 00 0 00 0112334456
Q ss_pred HHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh
Q 017148 125 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD 204 (376)
Q Consensus 125 iv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~ 204 (376)
-++.+|+.++.||.|| |+-. .++. +.+.++|+|.|.|++....+.. .. +...+.+.++.+.
T Consensus 215 di~wlr~~~~~PiivK---gV~~---~~dA-----~~a~~~Gvd~I~VsnhGGrqld-------~~-~~t~~~L~ei~~a 275 (367)
T PLN02493 215 DVQWLQTITKLPILVK---GVLT---GEDA-----RIAIQAGAAGIIVSNHGARQLD-------YV-PATISALEEVVKA 275 (367)
T ss_pred HHHHHHhccCCCEEee---cCCC---HHHH-----HHHHHcCCCEEEECCCCCCCCC-------Cc-hhHHHHHHHHHHH
Confidence 7888999999999999 4322 2332 2334799999999654221111 11 2235667777655
Q ss_pred C-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 205 F-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 205 ~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+ .++|||+.|||++..|+.+++..|||+|+|||.++.
T Consensus 276 v~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 276 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 3 369999999999999999999999999999999874
No 71
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.38 E-value=4.4e-12 Score=121.49 Aligned_cols=194 Identities=15% Similarity=0.119 Sum_probs=125.4
Q ss_pred CCcEEEccCCCCCh-HHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCH-HHHHHHHHH
Q 017148 8 PPWFSVAPMMDWTD-NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNL-DNLAKATEL 85 (376)
Q Consensus 8 ~nri~lAPM~~~td-~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~-~~~~~aa~~ 85 (376)
+.||+++||.++++ ..|...+.+.||.|++-....+.+.+-....++.++ -.++|++++|....+ +.+.+..+.
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l----~tdkPfGVnl~~~~~~~~~~~~l~v 77 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQVKALLEETAEL----LGDKPWGVGILGFVDTELRAAQLAV 77 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHh----ccCCCeEEEEeccCCCcchHHHHHH
Confidence 67999999999998 899999999999998766665544321111111111 157899999965321 224556667
Q ss_pred HHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcC
Q 017148 86 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS 165 (376)
Q Consensus 86 ~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~ 165 (376)
+.+.+.+.|.+.+|.|.. ++.+++ .++.+...+. +..+ ++.+++.
T Consensus 78 i~e~~v~~V~~~~G~P~~----------------------~~~lk~-~Gi~v~~~v~-------s~~~-----A~~a~~~ 122 (320)
T cd04743 78 VRAIKPTFALIAGGRPDQ----------------------ARALEA-IGISTYLHVP-------SPGL-----LKQFLEN 122 (320)
T ss_pred HHhcCCcEEEEcCCChHH----------------------HHHHHH-CCCEEEEEeC-------CHHH-----HHHHHHc
Confidence 777888988887665531 122332 3566654332 2222 2345689
Q ss_pred CccEEEEccCccccCCCCCCCCCCCCcccHHHHHH-HHhh-----CCCCeEEEecCCCCHHHHHHHHHcCc--------C
Q 017148 166 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA-LLRD-----FPDLTFTLNGGINTVDEVNAALRKGA--------H 231 (376)
Q Consensus 166 Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~-~~~~-----~~~ipVi~nGgI~s~~da~~~l~~Ga--------d 231 (376)
|+|.|++.|... +|+.+.. ... .+ +..+.. +.+. ..++|||+.|||.|...+..++..|| +
T Consensus 123 GaD~vVaqG~EA--GGH~G~~-~t~-~L-~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~ 197 (320)
T cd04743 123 GARKFIFEGREC--GGHVGPR-SSF-VL-WESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKV 197 (320)
T ss_pred CCCEEEEecCcC--cCCCCCC-Cch-hh-HHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCccccccccc
Confidence 999999999875 3432210 111 11 222211 2111 13799999999999999999998777 8
Q ss_pred eeEEchHHhhCCch
Q 017148 232 HVMVGRAAYQNPWY 245 (376)
Q Consensus 232 ~VmiGRa~l~~P~l 245 (376)
+|+||+.++..+..
T Consensus 198 GV~mGTrFl~t~Es 211 (320)
T cd04743 198 GVLMGTAYLFTEEA 211 (320)
T ss_pred EEEEccHHhcchhh
Confidence 99999999988775
No 72
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=99.38 E-value=4.1e-12 Score=123.17 Aligned_cols=169 Identities=14% Similarity=0.108 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHCCCCEEEecCC---------CCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCC-
Q 017148 77 DNLAKATELANAYNYDEINLNCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG- 144 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~g---------cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g- 144 (376)
+.|+.||+.+.++|||+||||.. .|.. +.|+|+||++++||.+++.|++++|++.++ .+..+-.+.+
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~-NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTT-NDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCC-CCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 56777888888999999999976 4553 578999999999999999999999999863 2222322321
Q ss_pred CCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccc-cCCCCCCCCCCCCccc----HHHHHHHHhhCCCCeEEEecCCCC
Q 017148 145 VDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-LNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 145 ~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-~~g~~~~~~~~~~~~~----~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
+.+. .+.++.. ..+.++++.|+|.+-+.|++.. +.+.. ..+...+.. .+....+.+.+.+.-|.++|+.++
T Consensus 253 fq~~~~t~d~~~-~~~~~y~~~g~df~~l~~g~~~~~~h~i--~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t 329 (400)
T KOG0134|consen 253 FQDIGITIDDAI-KMCGLYEDGGLDFVELTGGTFLAYVHFI--EPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRT 329 (400)
T ss_pred hhhccccccchH-HHHHHHHhcccchhhccCchhhhhhhhc--cccccccccccchhhhhhHHHHHhcCcEEEecCCccC
Confidence 1111 1222322 2345677889997766665531 11000 001100111 122233444453444557789999
Q ss_pred HHHHHHHHH-cCcCeeEEchHHhhCCchhhHh
Q 017148 219 VDEVNAALR-KGAHHVMVGRAAYQNPWYTLGH 249 (376)
Q Consensus 219 ~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~ 249 (376)
.+.+.++++ ...|+|.+||.+++||+|..+.
T Consensus 330 ~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl 361 (400)
T KOG0134|consen 330 REAMVEAVKSGRTDLIGYGRPFLANPDLPKRL 361 (400)
T ss_pred HHHHHHHHhcCCceeEEecchhccCCchhHHH
Confidence 999999999 5578999999999999997553
No 73
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.37 E-value=2.7e-11 Score=119.91 Aligned_cols=221 Identities=11% Similarity=0.080 Sum_probs=128.7
Q ss_pred eecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC--CHHHHHH
Q 017148 5 QYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS--NLDNLAK 81 (376)
Q Consensus 5 ~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~--~~~~~~~ 81 (376)
+.++.||+++||+ |+|+..+...+.++||.|++-+...+.+.+-.....+++.+ ..++|+++||+.+ +++...+
T Consensus 10 lgiryPii~gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~l---t~~~PfGVNL~~~~~~~~~e~~ 86 (418)
T cd04742 10 YGLRYAYVAGAMARGIASAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAAL---GNGEPYGVNLIHSPDEPELEEG 86 (418)
T ss_pred hCCCccEECCcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhc---cCCCCeEEeeecCCCCchhHHH
Confidence 4578899999999 79999999999999999999888877654432222222211 2278999999964 3444455
Q ss_pred HHHHHHHCCCCEEEecC-CCCCccccC-CCCccccccCCHHHHHHHHHHHhcccCccEEEEec--------CCCCCCccH
Q 017148 82 ATELANAYNYDEINLNC-GCPSPKVAG-HGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--------IGVDDHDSY 151 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~-gcP~~~v~r-~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR--------~g~~~~~~~ 151 (376)
..+.+.+.|...|+... +-|.+.+.+ +.. |-....+-+. .....|..|+. +|......+
T Consensus 87 ~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~-G~~~~~~g~~----------~~~~~ViakVsr~evAs~~f~ppp~~~v 155 (418)
T cd04742 87 LVDLFLRHGVRVVEASAFMQLTPALVRYRAK-GLRRDADGRV----------QIANRIIAKVSRPEVAEAFMSPAPERIL 155 (418)
T ss_pred HHHHHHHcCCCEEEeccccCCCcchhhHHhc-CCcccccccc----------cccceEEEecCChhhhhhhcCCCCHHHH
Confidence 67788888999888753 222211111 011 1100000000 00122333321 111111111
Q ss_pred HHHHH------HHHHHhhcCC-ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-------CCCeEEEecCCC
Q 017148 152 NQLCD------FIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-------PDLTFTLNGGIN 217 (376)
Q Consensus 152 ~~~~~------~i~~~~e~~G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-------~~ipVi~nGgI~ 217 (376)
.++.+ .-++++++.| +|.|++.. . -+|+.+. ... ..-+..+.+++.+. .++|||+.|||.
T Consensus 156 ~~L~~~G~it~~eA~~A~~~g~aD~Ivvq~-E--AGGH~g~--~~~-~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~ 229 (418)
T cd04742 156 KKLLAEGKITEEQAELARRVPVADDITVEA-D--SGGHTDN--RPL-SVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG 229 (418)
T ss_pred HHHHHcCCCCHHHHHHHHhCCCCCEEEEcc-c--CCCCCCC--ccH-HhHHHHHHHHHHHHhhccccCCCceEEEECCCC
Confidence 11110 0133456678 59999973 2 2343221 110 01122333333222 269999999999
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 218 TVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|++++..++..|||+|++|+.++..+.-
T Consensus 230 tg~~vaAA~alGAd~V~~GT~flat~Ea 257 (418)
T cd04742 230 TPEAAAAAFALGADFIVTGSINQCTVEA 257 (418)
T ss_pred CHHHHHHHHHcCCcEEeeccHHHhCccc
Confidence 9999999999999999999999998765
No 74
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.35 E-value=6.8e-11 Score=113.94 Aligned_cols=197 Identities=13% Similarity=0.071 Sum_probs=129.0
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhc-cCCCCCCEEEEec-CCCHHHHH
Q 017148 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIG-GSNLDNLA 80 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~-~~~~~~p~~vQL~-g~~~~~~~ 80 (376)
.++.++-|++.++|.+..+..+...+++.|+.+.+.= | ..+ ....+.+ .++. .+.+.+. |.+++++.
T Consensus 32 ~~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~-~~e-------~~~~~~r~~~~~--~l~v~~~vg~~~~~~~ 100 (326)
T PRK05458 32 GPRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-F-DPE-------ARIPFIKDMHEQ--GLIASISVGVKDDEYD 100 (326)
T ss_pred CCcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-C-CHH-------HHHHHHHhcccc--ccEEEEEecCCHHHHH
Confidence 4678889999999988889999998998887765533 2 211 1122221 1222 2345554 44577776
Q ss_pred HHHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHH
Q 017148 81 KATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 81 ~aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
++.++++. .|.|.|.|.+..| +...+.++++.+++..+ .||.++- + .+.++..
T Consensus 101 ~~~~Lv~ag~~~d~i~iD~a~g----------------h~~~~~e~I~~ir~~~p~~~vi~g~---V---~t~e~a~--- 155 (326)
T PRK05458 101 FVDQLAAEGLTPEYITIDIAHG----------------HSDSVINMIQHIKKHLPETFVIAGN---V---GTPEAVR--- 155 (326)
T ss_pred HHHHHHhcCCCCCEEEEECCCC----------------chHHHHHHHHHHHhhCCCCeEEEEe---c---CCHHHHH---
Confidence 66665543 2459999865332 23567888999998874 7787751 1 1333332
Q ss_pred HHHhhcCCccEEEEccCcc---cc---CCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCe
Q 017148 159 YKVSSLSPTRHFIIHSRKA---LL---NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH 232 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~---~~---~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~ 232 (376)
.+.++|+|++.|+.+.. .. .|.. .+...+..+.++++.. ++|||++|||.++.|+.+++..|||+
T Consensus 156 --~l~~aGad~i~vg~~~G~~~~t~~~~g~~------~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~Di~KaLa~GA~a 226 (326)
T PRK05458 156 --ELENAGADATKVGIGPGKVCITKIKTGFG------TGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGATM 226 (326)
T ss_pred --HHHHcCcCEEEECCCCCcccccccccCCC------CCccHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHhCCCE
Confidence 23479999999873321 11 1211 1111233577777654 89999999999999999999999999
Q ss_pred eEEchHHhhCCc
Q 017148 233 VMVGRAAYQNPW 244 (376)
Q Consensus 233 VmiGRa~l~~P~ 244 (376)
||+|+.++....
T Consensus 227 V~vG~~~~~~~e 238 (326)
T PRK05458 227 VMIGSLFAGHEE 238 (326)
T ss_pred EEechhhcCCcc
Confidence 999999885443
No 75
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.32 E-value=5.4e-11 Score=117.44 Aligned_cols=203 Identities=12% Similarity=0.112 Sum_probs=125.1
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhh------------------------
Q 017148 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL------------------------ 58 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~------------------------ 58 (376)
..+.++-||+.|||.++|+..+.....+.||.|++-. ..+++.+...-++.++..
T Consensus 37 ~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~-~~~~e~l~~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~ 115 (404)
T PRK06843 37 KNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHK-NMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQH 115 (404)
T ss_pred hccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecC-CCCHHHHHHHHHHHHhhcCCCceeecccccccchhheecccc
Confidence 3566788999999999999999999999999997753 333433221111111100
Q ss_pred --------------c----cCC-CCCC-EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCC
Q 017148 59 --------------A----FSP-EQHP-IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLD 118 (376)
Q Consensus 59 --------------~----~~~-~~~p-~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~ 118 (376)
. ..+ .++- +++-+ |..++.+.+ ++.+.++|+|.|-|-++.+ +
T Consensus 116 ~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aav-g~~~~~~~~-v~~lv~aGvDvI~iD~a~g----------------~ 177 (404)
T PRK06843 116 LEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAV-SIDIDTIER-VEELVKAHVDILVIDSAHG----------------H 177 (404)
T ss_pred chHHHHHhhhhhhhhcchhhhhhhcCeEEEEEE-eCCHHHHHH-HHHHHhcCCCEEEEECCCC----------------C
Confidence 0 000 1111 11112 335665544 4445568999998854321 2
Q ss_pred HHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc------cccCCCCCCCCCCCC
Q 017148 119 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK------ALLNGISPAENRTIP 191 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~------~~~~g~~~~~~~~~~ 191 (376)
.+.+.++++.+++.. +.++.++- ..+.++.. .+.++|+|+|.+.-+. +...|.. .+
T Consensus 178 ~~~~~~~v~~ik~~~p~~~vi~g~------V~T~e~a~-----~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g------~p 240 (404)
T PRK06843 178 STRIIELVKKIKTKYPNLDLIAGN------IVTKEAAL-----DLISVGADCLKVGIGPGSICTTRIVAGVG------VP 240 (404)
T ss_pred ChhHHHHHHHHHhhCCCCcEEEEe------cCCHHHHH-----HHHHcCCCEEEECCCCCcCCcceeecCCC------CC
Confidence 356788899998876 56666641 13344432 2346899999873111 1111111 11
Q ss_pred cccHHH---HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 192 PLKYEY---YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 192 ~~~~~~---v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.+.. +.++.+.. ++|||+.|||.++.|+.+++..|||+||+|+.+.....
T Consensus 241 --~ltai~~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~E 293 (404)
T PRK06843 241 --QITAICDVYEVCKNT-NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKE 293 (404)
T ss_pred --hHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeec
Confidence 1333 34444443 79999999999999999999999999999999988544
No 76
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.30 E-value=8.8e-11 Score=116.84 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCC---CCCCCCc
Q 017148 117 LDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP 192 (376)
Q Consensus 117 ~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~---~~~~~~~ 192 (376)
.+++.+.++++.+|+.++ +||.+|.-.+. + .+++ +++++..|+|+|+|.|..... +..+. ++..++.
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-~---~~~~----a~~~~~~g~D~I~VsG~~Ggt-g~~~~~~~~~~g~pt 266 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH-G---EGDI----AAGVAAAGADFITIDGAEGGT-GAAPLTFIDHVGLPT 266 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC-C---HHHH----HHHHHHcCCCEEEEeCCCCCC-CCCcccccccCCccH
Confidence 466788999999999987 99999988753 2 2233 344556779999998764211 11100 0011111
Q ss_pred ccHHHHHHHHh---hC---CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 193 LKYEYYYALLR---DF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 193 ~~~~~v~~~~~---~~---~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
...+.++.+ .. .++|||++|||.|+.|+.+++..|||+|.+||++|.--
T Consensus 267 --~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al 321 (392)
T cd02808 267 --ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIAL 321 (392)
T ss_pred --HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhc
Confidence 223333322 11 26999999999999999999999999999999999643
No 77
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.29 E-value=4e-11 Score=116.56 Aligned_cols=201 Identities=14% Similarity=0.117 Sum_probs=122.8
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCC------
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSN------ 75 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~------ 75 (376)
+..+.++.||+++||..+|+..+...+.+.||.|.+-.-....+.+-.. ..+. ....++|...+.+++.
T Consensus 8 ~~~~~i~~PIiq~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e~l~~~---i~~~--~~~~~~p~~~~~f~~~~~~v~~ 82 (336)
T COG2070 8 ILLLGIKYPIIQGGMAGVSTPELAAAVSNAGGLGIIASGGLPAEQLRAE---IRKI--RALTDKPFVANNFGSAPAPVNV 82 (336)
T ss_pred hcccCccCCeecCCccccCcHHHHHHHhccCCccccccccCCHHHHHHH---HHHH--HHhcCCcchhcccccccccchh
Confidence 3567788999999999999999999999999999443333332211111 1111 1123455444444421
Q ss_pred ------HHHHHHHHHHH-HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC
Q 017148 76 ------LDNLAKATELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 148 (376)
Q Consensus 76 ------~~~~~~aa~~~-~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~ 148 (376)
...+.+....+ +.+|...+-..+|-| | .+.++.++. .+..+..++..
T Consensus 83 ~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~-----------------~---~~~i~~~~~-~g~~v~~~v~~----- 136 (336)
T COG2070 83 NILVARRNAAEAGVDAIIEGAGVPVVSTSFGAP-----------------P---AEFVARLKA-AGIKVIHSVIT----- 136 (336)
T ss_pred heecccccchHHhhhhHHhcCCCCEEeccCCCC-----------------c---HHHHHHHHH-cCCeEEEEeCC-----
Confidence 12333333332 333554444444321 1 123344433 35555554332
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCHHHHHHHHH
Q 017148 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~~da~~~l~ 227 (376)
..+ ++..++.|+|.|+++|-.. +|+.+. ....+....++.++++.+ + ||||+.|||.|.+++..++.
T Consensus 137 --~~~-----A~~~~~~G~d~vI~~g~eA--GGH~g~--~~~~~~t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~AAla 204 (336)
T COG2070 137 --VRE-----ALKAERAGADAVIAQGAEA--GGHRGG--VDLEVSTFALVPEVVDAV-DGIPVIAAGGIADGRGIAAALA 204 (336)
T ss_pred --HHH-----HHHHHhCCCCEEEecCCcC--CCcCCC--CCCCccHHHHHHHHHHHh-cCCCEEEecCccChHHHHHHHH
Confidence 111 3445689999999998754 333221 011122356778888876 6 99999999999999999999
Q ss_pred cCcCeeEEchHHhhCCch
Q 017148 228 KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 228 ~Gad~VmiGRa~l~~P~l 245 (376)
.|||+|++|+.++.....
T Consensus 205 lGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 205 LGADGVQMGTRFLATKEA 222 (336)
T ss_pred hccHHHHhhhhhhccccc
Confidence 999999999999987654
No 78
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.29 E-value=1.3e-10 Score=115.90 Aligned_cols=216 Identities=12% Similarity=0.049 Sum_probs=125.1
Q ss_pred eecCCcEEEccCC-CCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCC-EEEEecCCC--HHHHH
Q 017148 5 QYLPPWFSVAPMM-DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHP-IVLQIGGSN--LDNLA 80 (376)
Q Consensus 5 ~~l~nri~lAPM~-~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p-~~vQL~g~~--~~~~~ 80 (376)
+.++.||+.+||+ |+|+..+...+.++||.|++-+...+.+.+-.....+++.+ .+.| +++||+.+. ++.-.
T Consensus 15 lgiryPiiqgpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~----~~~p~fGVNL~~~~~~~~~e~ 90 (444)
T TIGR02814 15 YGVRYAYVAGAMANGIASAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQAL----PGGPAYGVNLIHSPSDPALEW 90 (444)
T ss_pred hCCCCcEECccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhc----CCCCceEEEecccCCCcccHH
Confidence 4578899999999 79999999999999999999888777654433322222221 2335 999999753 32233
Q ss_pred HHHHHHHHCCCCEEEecCC---CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec--------CCCCCCc
Q 017148 81 KATELANAYNYDEINLNCG---CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--------IGVDDHD 149 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~g---cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR--------~g~~~~~ 149 (376)
+..+.+.+.|.+.|+...+ .|.. +.-+.. |.....+-+. ....+|..|+. ++.....
T Consensus 91 ~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~~-G~~~~~~g~~----------~~~~~ViakVsr~~vAs~f~~p~p~~ 158 (444)
T TIGR02814 91 GLVDLLLRHGVRIVEASAFMQLTPAL-VRYRAK-GLHRDADGRV----------VIRNRLIAKVSRPEVAEAFMSPAPAH 158 (444)
T ss_pred HHHHHHHHcCCCEEEeccccCCCcch-hhhhhc-cccccccccc----------cccceEEEecCCHHHHHHhcCCCcHH
Confidence 4556677889999988643 3321 110111 1100000000 00112333321 0110000
Q ss_pred cHHHHHH------HHHHHhhcCC-ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH---hhC-------CCCeEEE
Q 017148 150 SYNQLCD------FIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL---RDF-------PDLTFTL 212 (376)
Q Consensus 150 ~~~~~~~------~i~~~~e~~G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~---~~~-------~~ipVi~ 212 (376)
.++.+.+ .-+.++++.| +|.|++.. . -+|+.+. .+ .+.++..+. ... ..||||+
T Consensus 159 ~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve~-E--AGGHtg~----~~--~~~Llp~i~~lrd~v~~~~~y~~~VpViA 229 (444)
T TIGR02814 159 ILQKLLAEGRITREEAELARRVPVADDICVEA-D--SGGHTDN----RP--LVVLLPAIIRLRDTLMRRYGYRKPIRVGA 229 (444)
T ss_pred HHHHHHHcCCCCHHHHHHHHhCCCCcEEEEec-c--CCCCCCC----Cc--HHHHHHHHHHHHHHHhhcccCCCCceEEE
Confidence 0111100 0123456778 49998862 2 2343221 11 134444442 221 2689999
Q ss_pred ecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 213 NGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 213 nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.|||.|++++..++..|||+|++|+.++..+.-
T Consensus 230 AGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 230 AGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA 262 (444)
T ss_pred eCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence 999999999999999999999999999998764
No 79
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.25 E-value=1.4e-10 Score=109.18 Aligned_cols=177 Identities=15% Similarity=0.206 Sum_probs=114.9
Q ss_pred HHHhCCCcEEEecceeecccccccc-hhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcccc
Q 017148 28 ARLISKHAWLYTEMLAAETIIYQQG-NLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA 106 (376)
Q Consensus 28 ~~~~Gg~gl~~te~v~~~~~~~~~~-~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~ 106 (376)
....|.-.+++|..-........+. -+.++.+. ...| +|+.| ....+.++.+. .++|++.|.||
T Consensus 39 ~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~--~~~p--v~~gG-Gi~s~~d~~~l-~~~G~~~vvig--------- 103 (258)
T PRK01033 39 FNEKEVDELIVLDIDASKRGSEPNYELIENLASE--CFMP--LCYGG-GIKTLEQAKKI-FSLGVEKVSIN--------- 103 (258)
T ss_pred HHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh--CCCC--EEECC-CCCCHHHHHHH-HHCCCCEEEEC---------
Confidence 4556633466666654432111111 11222221 2344 46665 34444444444 46799999886
Q ss_pred CCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC-----------CCC--CccHHHHHHHHHHHhhcCCccEEEEc
Q 017148 107 GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-----------VDD--HDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 107 r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g-----------~~~--~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
++++.+|+++.++++...+. .+++++++|.| |.+ .....++ .+.+++.|++.|++|
T Consensus 104 ------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~----~~~~~~~g~~~ii~~ 172 (258)
T PRK01033 104 ------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLEL----AKEYEALGAGEILLN 172 (258)
T ss_pred ------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHH----HHHHHHcCCCEEEEE
Confidence 34567899999999988532 26777777765 212 1223333 334568999999999
Q ss_pred cCcc--ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH-HcCcCeeEEchHHhhC
Q 017148 174 SRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-RKGAHHVMVGRAAYQN 242 (376)
Q Consensus 174 ~r~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l-~~Gad~VmiGRa~l~~ 242 (376)
+++. .++|. +|+.+.++++. +++|||++|||.+.+|+.+++ +.|||+|.+|+++.-.
T Consensus 173 ~i~~~G~~~G~-----------d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 173 SIDRDGTMKGY-----------DLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred ccCCCCCcCCC-----------CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 8875 33331 38888888776 589999999999999999999 4999999999998765
No 80
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.23 E-value=1.6e-10 Score=107.79 Aligned_cols=127 Identities=13% Similarity=0.164 Sum_probs=89.2
Q ss_pred HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEEe----------cCCCCCCccHHHHHH
Q 017148 88 AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKC----------RIGVDDHDSYNQLCD 156 (376)
Q Consensus 88 ~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vKi----------R~g~~~~~~~~~~~~ 156 (376)
+.|+|.|.++ ..++.+|+.+.++++.+.+ .+-+++.+|. |.++++. . .+..+
T Consensus 91 ~~G~~~v~ig---------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~-~-~~~~~ 153 (243)
T cd04731 91 RAGADKVSIN---------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPT-G-LDAVE 153 (243)
T ss_pred HcCCceEEEC---------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceec-C-CCHHH
Confidence 4688888775 3455789999999998853 3445555554 4333321 1 12222
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEE
Q 017148 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
+ .+.+++.|+|.|++|+++.. |.. ...+++.+.++.+.. ++|||++|||++++|+.++++ +|||+||+
T Consensus 154 ~-~~~l~~~G~d~i~v~~i~~~--g~~-------~g~~~~~i~~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 154 W-AKEVEELGAGEILLTSMDRD--GTK-------KGYDLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred H-HHHHHHCCCCEEEEeccCCC--CCC-------CCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 2 34456899999999997742 211 112478888887754 899999999999999999999 69999999
Q ss_pred chHHhhC
Q 017148 236 GRAAYQN 242 (376)
Q Consensus 236 GRa~l~~ 242 (376)
||+++..
T Consensus 223 g~al~~~ 229 (243)
T cd04731 223 ASIFHFG 229 (243)
T ss_pred eHHHHcC
Confidence 9998654
No 81
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.21 E-value=1.7e-09 Score=103.86 Aligned_cols=196 Identities=13% Similarity=0.114 Sum_probs=127.7
Q ss_pred CCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhc-cCCCCCCEEEEecCCCHHHHHH
Q 017148 3 ARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSPEQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 3 ~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~-~~~~~~p~~vQL~g~~~~~~~~ 81 (376)
.++.+.-|++.+.|.+..+..+...+++.|+.+.+ -.+ .++.. ..+++ .++..-++++.+ |..++++.+
T Consensus 29 ~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~-hK~-~~E~~-------~sfvrk~k~~~L~v~~Sv-G~t~e~~~r 98 (321)
T TIGR01306 29 GKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIM-HRF-DEESR-------IPFIKDMQERGLFASISV-GVKACEYEF 98 (321)
T ss_pred CCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEE-ecC-CHHHH-------HHHHHhccccccEEEEEc-CCCHHHHHH
Confidence 46788999999999988999999999988865443 332 22211 11222 222222223322 667888888
Q ss_pred HHHHHHHCC--CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017148 82 ATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 82 aa~~~~~~G--~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
+..+++. | .|.|-+-.. + | +.+.+.+.++.+++.+..|+.++=- +. +.+. +
T Consensus 99 ~~~lv~a-~~~~d~i~~D~a--------h---g-----~s~~~~~~i~~i~~~~p~~~vi~Gn--V~---t~e~-----a 151 (321)
T TIGR01306 99 VTQLAEE-ALTPEYITIDIA--------H---G-----HSNSVINMIKHIKTHLPDSFVIAGN--VG---TPEA-----V 151 (321)
T ss_pred HHHHHhc-CCCCCEEEEeCc--------c---C-----chHHHHHHHHHHHHhCCCCEEEEec--CC---CHHH-----H
Confidence 8877655 5 587766421 1 2 3577889999999988666544422 22 2322 2
Q ss_pred HHhhcCCccEEEEc---cCcc---ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017148 160 KVSSLSPTRHFIIH---SRKA---LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh---~r~~---~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
+.+.++|+|.|.|+ |+.. ...|... +......+.++++.. ++|||++|||++..|+.++|..|||+|
T Consensus 152 ~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~------~~~~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KALa~GAd~V 224 (321)
T TIGR01306 152 RELENAGADATKVGIGPGKVCITKIKTGFGT------GGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSIRFGASMV 224 (321)
T ss_pred HHHHHcCcCEEEECCCCCccccceeeeccCC------CchHHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHHHcCCCEE
Confidence 23457999999998 3321 1112111 111135677777654 899999999999999999999999999
Q ss_pred EEchHHhhC
Q 017148 234 MVGRAAYQN 242 (376)
Q Consensus 234 miGRa~l~~ 242 (376)
|+||.+-+.
T Consensus 225 mig~~~ag~ 233 (321)
T TIGR01306 225 MIGSLFAGH 233 (321)
T ss_pred eechhhcCc
Confidence 999887654
No 82
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.20 E-value=3.5e-10 Score=104.74 Aligned_cols=147 Identities=21% Similarity=0.290 Sum_probs=97.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEE----e
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK----C 141 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vK----i 141 (376)
+-+|+.|. .....++ +.+.+.|+|.|-+ |.+++.+|+++.++.+.+.+ .+-+++.+| +
T Consensus 74 ~pv~~~Gg-I~~~e~~-~~~~~~Gad~vvi---------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~ 136 (234)
T cd04732 74 IPVQVGGG-IRSLEDI-ERLLDLGVSRVII---------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVA 136 (234)
T ss_pred CCEEEeCC-cCCHHHH-HHHHHcCCCEEEE---------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEE
Confidence 33566553 2222333 3334578888743 55667789999999988754 222222222 2
Q ss_pred cCCCCCC--ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017148 142 RIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 142 R~g~~~~--~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
+.+|.+. .+..+++ +.+++.|++.|++|.++..... .+ .+++.+.++++.. ++||+++|||.+.
T Consensus 137 ~~~~~~~~~~~~~~~~----~~~~~~ga~~iii~~~~~~g~~-~g--------~~~~~i~~i~~~~-~ipvi~~GGi~~~ 202 (234)
T cd04732 137 TKGWLETSEVSLEELA----KRFEELGVKAIIYTDISRDGTL-SG--------PNFELYKELAAAT-GIPVIASGGVSSL 202 (234)
T ss_pred ECCCeeecCCCHHHHH----HHHHHcCCCEEEEEeecCCCcc-CC--------CCHHHHHHHHHhc-CCCEEEecCCCCH
Confidence 2244321 2333333 3456799999999987642111 11 2388888887764 8999999999999
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 220 DEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+|+.++++.|||+||+||+++.++.
T Consensus 203 ~di~~~~~~Ga~gv~vg~~~~~~~~ 227 (234)
T cd04732 203 DDIKALKELGVAGVIVGKALYEGKI 227 (234)
T ss_pred HHHHHHHHCCCCEEEEeHHHHcCCC
Confidence 9999999999999999999999985
No 83
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.19 E-value=3.5e-10 Score=104.68 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=91.2
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec----CCCCCC--ccHHHHHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR----IGVDDH--DSYNQLCDFI 158 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR----~g~~~~--~~~~~~~~~i 158 (376)
.+.+.|+|.|- .|++++.+++.+.++++...+.+.+++.+|.+ .||.+. .+..++
T Consensus 91 ~~~~~Ga~~vi---------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~---- 151 (233)
T PRK00748 91 ALLDAGVSRVI---------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDL---- 151 (233)
T ss_pred HHHHcCCCEEE---------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHH----
Confidence 34446887763 36777788999999999886554444444321 355332 233343
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEch
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGR 237 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGR 237 (376)
.+.+++.|++.|.+|.+++..... + .+++.+.++++.. ++|||++|||.|.+|+.++++.| ||+||+||
T Consensus 152 ~~~~~~~g~~~ii~~~~~~~g~~~-G--------~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 152 AKRFEDAGVKAIIYTDISRDGTLS-G--------PNVEATRELAAAV-PIPVIASGGVSSLDDIKALKGLGAVEGVIVGR 221 (233)
T ss_pred HHHHHhcCCCEEEEeeecCcCCcC-C--------CCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEH
Confidence 334567899999999887532221 1 2388888888764 79999999999999999999955 99999999
Q ss_pred HHhhC
Q 017148 238 AAYQN 242 (376)
Q Consensus 238 a~l~~ 242 (376)
+++..
T Consensus 222 a~~~~ 226 (233)
T PRK00748 222 ALYEG 226 (233)
T ss_pred HHHcC
Confidence 99865
No 84
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.17 E-value=7e-10 Score=102.78 Aligned_cols=144 Identities=14% Similarity=0.201 Sum_probs=97.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
+.|+ |+. .++..+.++.+ +.+.|++.|.++ +.++.+|+.+.++++...+. .++++++++.
T Consensus 74 ~~pv--~~~-ggi~~~~d~~~-~~~~G~~~vilg---------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~ 133 (232)
T TIGR03572 74 FMPL--TVG-GGIRSLEDAKK-LLSLGADKVSIN---------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKK 133 (232)
T ss_pred CCCE--EEE-CCCCCHHHHHH-HHHcCCCEEEEC---------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEecc
Confidence 4454 554 34444444444 445699998775 45678899999998876433 2567777766
Q ss_pred C------------CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017148 144 G------------VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 144 g------------~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+ |.+... .+..++ ++.+++.|++.|++|+.+..... ...+++.+.++++.. ++||+
T Consensus 134 ~~~~~~~~v~~~~~~~~~~-~~~~~~-~~~~~~~G~d~i~i~~i~~~g~~---------~g~~~~~~~~i~~~~-~ipvi 201 (232)
T TIGR03572 134 ELDGSDYKVYSDNGRRATG-RDPVEW-AREAEQLGAGEILLNSIDRDGTM---------KGYDLELIKTVSDAV-SIPVI 201 (232)
T ss_pred CCCCCcEEEEECCCcccCC-CCHHHH-HHHHHHcCCCEEEEeCCCccCCc---------CCCCHHHHHHHHhhC-CCCEE
Confidence 4 211111 122332 34456799999999997642111 112488888888764 89999
Q ss_pred EecCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017148 212 LNGGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 212 ~nGgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
++|||.+.+|+.+++. +|||+|++|+++
T Consensus 202 a~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 202 ALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 9999999999999665 999999999987
No 85
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.16 E-value=1.1e-09 Score=101.37 Aligned_cols=128 Identities=21% Similarity=0.281 Sum_probs=92.4
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh-cccCccEEEEec------CCCCCCc--cHHHH
Q 017148 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANTNVPVSVKCR------IGVDDHD--SYNQL 154 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~-~~~~~pv~vKiR------~g~~~~~--~~~~~ 154 (376)
+.+.++|+|.|-+ |+.++.+++.+.+++++.. +. +.+++++| -||.+.. +..++
T Consensus 88 ~~~~~~Ga~~vvl---------------gs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~~~v~~~g~~~~~~~~~~~~ 150 (230)
T TIGR00007 88 EKLLDLGVDRVII---------------GTAAVENPDLVKELLKEYGPER--IVVSLDARGGEVAVKGWLEKSEVSLEEL 150 (230)
T ss_pred HHHHHcCCCEEEE---------------ChHHhhCHHHHHHHHHHhCCCc--EEEEEEEECCEEEEcCCcccCCCCHHHH
Confidence 4455579988732 5666778999999999885 33 34555555 3455422 23333
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017148 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
+ +.+++.|++.+++|.++..... .+ .+++.+.++.+. +++||+++|||.+.+|+.+++++|||+||
T Consensus 151 ~----~~~~~~g~~~ii~~~~~~~g~~-~g--------~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ 216 (230)
T TIGR00007 151 A----KRLEELGLEGIIYTDISRDGTL-SG--------PNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVI 216 (230)
T ss_pred H----HHHHhCCCCEEEEEeecCCCCc-CC--------CCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEE
Confidence 3 3345799999999988753111 11 248888888776 58999999999999999999899999999
Q ss_pred EchHHhhC
Q 017148 235 VGRAAYQN 242 (376)
Q Consensus 235 iGRa~l~~ 242 (376)
+||+++.+
T Consensus 217 ig~a~~~~ 224 (230)
T TIGR00007 217 VGKALYEG 224 (230)
T ss_pred EeHHHHcC
Confidence 99999876
No 86
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.14 E-value=3.8e-10 Score=109.47 Aligned_cols=204 Identities=19% Similarity=0.223 Sum_probs=123.3
Q ss_pred CCCeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhh---ccCCCC-CCEEEEecCCCHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL---AFSPEQ-HPIVLQIGGSNLD 77 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~---~~~~~~-~p~~vQL~g~~~~ 77 (376)
.+++.++-|++-|||.++|+..+.......||.|.+--.+...+.. ..-++.++.. ...+.+ -.+.+-+ |..++
T Consensus 31 ~~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~-~~v~~vK~~~~~a~~d~~~~l~V~aav-g~~~~ 108 (352)
T PF00478_consen 31 TRNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQA-EEVKKVKRYYPNASKDEKGRLLVAAAV-GTRDD 108 (352)
T ss_dssp STSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHH-HHHHHHHTHHTTHHBHTTSCBCEEEEE-ESSTC
T ss_pred cCCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHH-HHHhhhccccccccccccccceEEEEe-cCCHH
Confidence 3678899999999999999999998877789888876655432211 0111111111 111222 2344444 33444
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHH
Q 017148 78 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
++.++.. +.++|+|.|-|... + | +.+.+.+.++.+++..+ +||.+- ++ .+.+...
T Consensus 109 ~~er~~~-L~~agvD~ivID~a--------~---g-----~s~~~~~~ik~ik~~~~~~~viaG---NV---~T~e~a~- 164 (352)
T PF00478_consen 109 DFERAEA-LVEAGVDVIVIDSA--------H---G-----HSEHVIDMIKKIKKKFPDVPVIAG---NV---VTYEGAK- 164 (352)
T ss_dssp HHHHHHH-HHHTT-SEEEEE-S--------S---T-----TSHHHHHHHHHHHHHSTTSEEEEE---EE----SHHHHH-
T ss_pred HHHHHHH-HHHcCCCEEEcccc--------C---c-----cHHHHHHHHHHHHHhCCCceEEec---cc---CCHHHHH-
Confidence 5555555 45579999977531 1 2 24667788999988774 777663 12 2332221
Q ss_pred HHHHHhhcCCccEEEEccC------ccccCCCCCCCCCCCCcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHH
Q 017148 157 FIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r------~~~~~g~~~~~~~~~~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
-+.++|+|.|.|--+ |+...|.+ .|. +..+. +.++++ ++|||+.|||.+.-|+.++|.
T Consensus 165 ----~L~~aGad~vkVGiGpGsiCtTr~v~GvG------~PQ--~tAv~~~a~~a~~~-~v~iIADGGi~~sGDi~KAla 231 (352)
T PF00478_consen 165 ----DLIDAGADAVKVGIGPGSICTTREVTGVG------VPQ--LTAVYECAEAARDY-GVPIIADGGIRTSGDIVKALA 231 (352)
T ss_dssp ----HHHHTT-SEEEESSSSSTTBHHHHHHSBS------CTH--HHHHHHHHHHHHCT-TSEEEEESS-SSHHHHHHHHH
T ss_pred ----HHHHcCCCEEEEeccCCcccccccccccC------CcH--HHHHHHHHHHhhhc-cCceeecCCcCcccceeeeee
Confidence 133699999998522 12222322 122 33343 344445 899999999999999999999
Q ss_pred cCcCeeEEchHHhhCCc
Q 017148 228 KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 228 ~Gad~VmiGRa~l~~P~ 244 (376)
.|||+||+|+.|-..-.
T Consensus 232 ~GAd~VMlG~llAgt~E 248 (352)
T PF00478_consen 232 AGADAVMLGSLLAGTDE 248 (352)
T ss_dssp TT-SEEEESTTTTTBTT
T ss_pred ecccceeechhhccCcC
Confidence 99999999998876543
No 87
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.14 E-value=1.8e-09 Score=100.48 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=93.6
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEE---ec-CCCCCCc--cHHHHHH
Q 017148 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK---CR-IGVDDHD--SYNQLCD 156 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vK---iR-~g~~~~~--~~~~~~~ 156 (376)
+.+.++|+|.|-+ |+.++++|+.+.++++.+.+ .+-+.+.+| +. -||.+.. +..+++
T Consensus 92 ~~~~~~Ga~~v~i---------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~- 155 (241)
T PRK13585 92 ASLLDLGVDRVIL---------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAA- 155 (241)
T ss_pred HHHHHcCCCEEEE---------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHH-
Confidence 3344589998855 55667789999998888632 221122221 01 2665432 344433
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.+++.|++.|++|.++.. |.. ...+++.+.++++.. ++||+++|||+|++|+.+++++||++|++|
T Consensus 156 ---~~~~~~G~~~i~~~~~~~~--g~~-------~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 156 ---KRFEELGAGSILFTNVDVE--GLL-------EGVNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred ---HHHHHcCCCEEEEEeecCC--CCc-------CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 3446799999999987642 110 112488888888765 899999999999999999878999999999
Q ss_pred hHHhhCCchh
Q 017148 237 RAAYQNPWYT 246 (376)
Q Consensus 237 Ra~l~~P~lf 246 (376)
++++.+|..+
T Consensus 223 sa~~~~~~~~ 232 (241)
T PRK13585 223 SALYKGKFTL 232 (241)
T ss_pred HHHhcCCcCH
Confidence 9999999875
No 88
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=99.12 E-value=3.6e-09 Score=98.62 Aligned_cols=207 Identities=17% Similarity=0.210 Sum_probs=132.0
Q ss_pred CeecCCcEEEccCCCC----Ch--HHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCC-CH
Q 017148 4 RQYLPPWFSVAPMMDW----TD--NHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGS-NL 76 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~----td--~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~-~~ 76 (376)
|.+++-||.+||.+.. .| ..-.+.|.+.| ..++++-+.+ -..+.+....+.+ --..||+-+ |.
T Consensus 64 G~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~-~~~i~Ss~at--------~S~EdI~~aap~~-~rwfQLYvykdr 133 (363)
T KOG0538|consen 64 GQKISAPIMIAPTAMQKMAHPDGELATARAAQAAG-TIMILSSWAT--------CSVEDIASAAPPG-IRWFQLYVYKDR 133 (363)
T ss_pred cccccceeEEcchHHHhccCCcccHHHHHHHHhcC-CcEEEechhc--------CCHHHHHhhCCCC-cEEEEEEecCch
Confidence 4567779999997541 23 23333343332 3333322222 1223333333333 467899864 56
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCc----------------------------cccCCC-----CccccccCCHHHHH
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSP----------------------------KVAGHG-----CFGVSLMLDPKFVG 123 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~----------------------------~v~r~g-----~yG~~l~~~~~~~~ 123 (376)
+.-.+..++++++||.++-+....|.- ++-..+ .|+++ .-+|.+-.
T Consensus 134 ~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~-~id~Sl~W 212 (363)
T KOG0538|consen 134 DITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSS-QIDPSLSW 212 (363)
T ss_pred HHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhc-CCCCCCCh
Confidence 666778899999999999887655521 000000 12221 12566777
Q ss_pred HHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHH
Q 017148 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYAL 201 (376)
Q Consensus 124 eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~ 201 (376)
+-++.+++.+..|+.+|=-+ . .++. .++.++|++.|+| ||+.+.... |...+.+.++
T Consensus 213 ~Di~wLr~~T~LPIvvKGil---t---~eDA-----~~Ave~G~~GIIVSNHGgRQlD~v----------pAtI~~L~Ev 271 (363)
T KOG0538|consen 213 KDIKWLRSITKLPIVVKGVL---T---GEDA-----RKAVEAGVAGIIVSNHGGRQLDYV----------PATIEALPEV 271 (363)
T ss_pred hhhHHHHhcCcCCeEEEeec---c---cHHH-----HHHHHhCCceEEEeCCCccccCcc----------cchHHHHHHH
Confidence 88889999999999999333 2 1222 2234799999999 565543221 2336777888
Q ss_pred HhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 202 LRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 202 ~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++.+- +|||+..|||++..|+.++|..||.+|.+||.++.-
T Consensus 272 v~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 272 VKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWG 313 (363)
T ss_pred HHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchhee
Confidence 77653 699999999999999999999999999999987643
No 89
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.11 E-value=1.8e-09 Score=101.46 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=90.2
Q ss_pred HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHh-----cccC-------ccEEEEecCCCCCC-ccHHHH
Q 017148 88 AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-----ANTN-------VPVSVKCRIGVDDH-DSYNQL 154 (376)
Q Consensus 88 ~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~-----~~~~-------~pv~vKiR~g~~~~-~~~~~~ 154 (376)
+.|++.|.+ |+.++.+|+.+.++.+.+- -.++ .|++||+|.+++.. .+..+.
T Consensus 94 ~~Ga~~Vii---------------gt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (253)
T PRK02083 94 RAGADKVSI---------------NSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEW 158 (253)
T ss_pred HcCCCEEEE---------------ChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHH
Confidence 368888866 3455678999999988862 1223 46799999866532 223333
Q ss_pred HHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017148 155 CDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+ +.+++.|++.|++|. |....+|. +|+.+.++.+.. ++|||++|||.|.+|+.++++ +|||
T Consensus 159 ~----~~~~~~g~~~ii~~~i~~~g~~~g~-----------d~~~i~~~~~~~-~ipvia~GGv~s~~d~~~~~~~~G~~ 222 (253)
T PRK02083 159 A----KEVEELGAGEILLTSMDRDGTKNGY-----------DLELTRAVSDAV-NVPVIASGGAGNLEHFVEAFTEGGAD 222 (253)
T ss_pred H----HHHHHcCCCEEEEcCCcCCCCCCCc-----------CHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHhCCcc
Confidence 2 234578999999976 43222331 388888887764 899999999999999999998 7999
Q ss_pred eeEEchHHhhC
Q 017148 232 HVMVGRAAYQN 242 (376)
Q Consensus 232 ~VmiGRa~l~~ 242 (376)
+|++|+++...
T Consensus 223 gvivg~al~~~ 233 (253)
T PRK02083 223 AALAASIFHFG 233 (253)
T ss_pred EEeEhHHHHcC
Confidence 99999998754
No 90
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.08 E-value=2e-08 Score=96.07 Aligned_cols=196 Identities=16% Similarity=0.113 Sum_probs=126.2
Q ss_pred CeecCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhc-cCC-CCCCEEEEecCCCHHHHHH
Q 017148 4 RQYLPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLA-FSP-EQHPIVLQIGGSNLDNLAK 81 (376)
Q Consensus 4 ~~~l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~-~~~-~~~p~~vQL~g~~~~~~~~ 81 (376)
++.+.-|++-|.|.++++.++.....++|+.+.+ =-+.+.+. ...+.+ ..+ ....+.+. .|..++++.+
T Consensus 41 ~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~i-Hk~~~~e~-------~~~~v~~~~~~~~~~~~vs-vG~~~~d~er 111 (343)
T TIGR01305 41 QTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAI-HKHYSVDE-------WKAFATNSSPDCLQNVAVS-SGSSDNDLEK 111 (343)
T ss_pred ceeeCCceEecCCCcccCHHHHHHHHHCCCeEEE-eeCCCHHH-------HHHHHHhhcccccceEEEE-eccCHHHHHH
Confidence 4567789999999999999999988888866544 12122221 111221 111 12234443 3667888988
Q ss_pred HHHHHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 82 ATELANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 82 aa~~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+..+++. .+.|.|-|... +| +.+.+.+.++.+|+...-+..+|=. +- +.+...
T Consensus 112 ~~~L~~a~~~~d~iviD~A--------hG--------hs~~~i~~ik~ir~~~p~~~viaGN--V~---T~e~a~----- 165 (343)
T TIGR01305 112 MTSILEAVPQLKFICLDVA--------NG--------YSEHFVEFVKLVREAFPEHTIMAGN--VV---TGEMVE----- 165 (343)
T ss_pred HHHHHhcCCCCCEEEEECC--------CC--------cHHHHHHHHHHHHhhCCCCeEEEec--cc---CHHHHH-----
Confidence 8887765 36899877531 22 3577899999999987555555522 22 233322
Q ss_pred HhhcCCccEEEEc------cCccccCCCCCCCCCCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCe
Q 017148 161 VSSLSPTRHFIIH------SRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHH 232 (376)
Q Consensus 161 ~~e~~Gvd~I~vh------~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~ 232 (376)
.+.++|+|.|.|. ..++...|.. .+ .+..+.++.+.. .++|||+.|||.+.-|+.+++..|||+
T Consensus 166 ~Li~aGAD~ikVgiGpGSicttR~~~Gvg------~p--qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~ 237 (343)
T TIGR01305 166 ELILSGADIVKVGIGPGSVCTTRTKTGVG------YP--QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADF 237 (343)
T ss_pred HHHHcCCCEEEEcccCCCcccCceeCCCC------cC--HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCE
Confidence 2336999999986 2223223321 11 255565555433 279999999999999999999999999
Q ss_pred eEEchHHhhC
Q 017148 233 VMVGRAAYQN 242 (376)
Q Consensus 233 VmiGRa~l~~ 242 (376)
||+|.-+-+.
T Consensus 238 VMlG~llAG~ 247 (343)
T TIGR01305 238 VMLGGMFAGH 247 (343)
T ss_pred EEECHhhhCc
Confidence 9999544433
No 91
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.04 E-value=6.9e-09 Score=106.09 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 153 (376)
.++. .+-++.+.++|+|.|.|+.. + | +.....+.++.+++.. +++|.++ +..+.++
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~id~a--------~---G-----~s~~~~~~i~~ik~~~~~~~v~aG------~V~t~~~ 295 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVVDSS--------Q---G-----NSIYQIDMIKKLKSNYPHVDIIAG------NVVTADQ 295 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEEecC--------C---C-----CchHHHHHHHHHHhhCCCceEEEC------CcCCHHH
Confidence 3555 45556677789999999863 1 2 2344577888888875 5677663 1123333
Q ss_pred HHHHHHHHhhcCCccEEEEc--cC-cc---ccCCCCCCCCCCCCcccHHH---HHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017148 154 LCDFIYKVSSLSPTRHFIIH--SR-KA---LLNGISPAENRTIPPLKYEY---YYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh--~r-~~---~~~g~~~~~~~~~~~~~~~~---v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
.. .+.++|+|+|.|. ++ +. ...+.+ .|. +.. +.+..++. ++|||+.|||.++.|+.+
T Consensus 296 a~-----~~~~aGad~I~vg~g~Gs~~~t~~~~~~g------~p~--~~ai~~~~~~~~~~-~v~vIadGGi~~~~di~k 361 (495)
T PTZ00314 296 AK-----NLIDAGADGLRIGMGSGSICITQEVCAVG------RPQ--ASAVYHVARYARER-GVPCIADGGIKNSGDICK 361 (495)
T ss_pred HH-----HHHHcCCCEEEECCcCCcccccchhccCC------CCh--HHHHHHHHHHHhhc-CCeEEecCCCCCHHHHHH
Confidence 22 2347999999873 22 11 111111 122 233 33444443 799999999999999999
Q ss_pred HHHcCcCeeEEchHHhhCCc
Q 017148 225 ALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 225 ~l~~Gad~VmiGRa~l~~P~ 244 (376)
+++.|||+||+|+.+...-.
T Consensus 362 Ala~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 362 ALALGADCVMLGSLLAGTEE 381 (495)
T ss_pred HHHcCCCEEEECchhccccc
Confidence 99999999999999876543
No 92
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.01 E-value=1.7e-09 Score=105.61 Aligned_cols=106 Identities=21% Similarity=0.224 Sum_probs=77.9
Q ss_pred cCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcc
Q 017148 116 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPL 193 (376)
Q Consensus 116 ~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~ 193 (376)
..+|....|.+..+++.+..|+.+| |+... +|.. -+-+.|+++|.+ |++.+...|.+
T Consensus 200 ~~~P~i~ked~~~i~~~~~~~lv~k---GV~~~---~D~~-----~a~~tg~~~I~vsnhggrqlD~g~s---------- 258 (360)
T COG1304 200 LSVPVISKEDGAGISKEWAGPLVLK---GILAP---EDAA-----GAGGTGADGIEVSNHGGRQLDWGIS---------- 258 (360)
T ss_pred cCCCcccHHHHhHHHHhcCCcHHHh---CCCCH---HHHH-----hhccCCceEEEEEcCCCccccCCCC----------
Confidence 3567777788888888887887776 54432 2221 123689999999 45544333322
Q ss_pred cHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 194 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 194 ~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
..+.+.++.+.++ +++|++.|||+++.|+.++++.|||+|++||++|..
T Consensus 259 t~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~ 308 (360)
T COG1304 259 TADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYG 308 (360)
T ss_pred hHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHH
Confidence 2677778887776 499999999999999999999999999999998653
No 93
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.97 E-value=4.4e-08 Score=93.69 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=124.5
Q ss_pred cCCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhh-ccCCC-CCCEEEEecCCCHHHHHHHHH
Q 017148 7 LPPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFL-AFSPE-QHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 7 l~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~-~~~~~-~~p~~vQL~g~~~~~~~~aa~ 84 (376)
+.-|++-|+|.++++.++.....++|+.+.+ =-+.+.+. ...++ ..++. ...+.+.+ |..++++.++.+
T Consensus 45 ~giPii~AnMdTV~~~~mA~~la~~g~~~~i-Hk~~~~e~-------~~~fv~~~~~~~~~~~~vav-G~~~~d~er~~~ 115 (346)
T PRK05096 45 SGVPIIAANMDTVGTFEMAKALASFDILTAV-HKHYSVEE-------WAAFVNNSSADVLKHVMVST-GTSDADFEKTKQ 115 (346)
T ss_pred cCCceEecCCCccccHHHHHHHHHCCCeEEE-ecCCCHHH-------HHHHHHhccccccceEEEEe-cCCHHHHHHHHH
Confidence 4479999999999999999988888865543 11111111 11122 11211 12344433 667889999988
Q ss_pred HHHH-CCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017148 85 LANA-YNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 85 ~~~~-~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
+++. +|.|.|-|... +| +.+.+.+.++.+|+.. +.+|.+. ++ .+.+ .++ -+
T Consensus 116 L~~~~~g~D~iviD~A--------hG--------hs~~~i~~ik~ik~~~P~~~vIaG---NV---~T~e-~a~----~L 168 (346)
T PRK05096 116 ILALSPALNFICIDVA--------NG--------YSEHFVQFVAKAREAWPDKTICAG---NV---VTGE-MVE----EL 168 (346)
T ss_pred HHhcCCCCCEEEEECC--------CC--------cHHHHHHHHHHHHHhCCCCcEEEe---cc---cCHH-HHH----HH
Confidence 8874 79999988531 22 3577899999999875 5566552 12 2222 221 23
Q ss_pred hcCCccEEEEccC------ccccCCCCCCCCCCCCcccHHHHHH---HHhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017148 163 SLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYYA---LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 163 e~~Gvd~I~vh~r------~~~~~g~~~~~~~~~~~~~~~~v~~---~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
.++|+|.|.|--+ |+...|.+- |+ +..+.+ ..++ .++|||+.|||.+.-|+.++|..|||+|
T Consensus 169 i~aGAD~vKVGIGpGSiCtTr~vtGvG~------PQ--ltAV~~~a~~a~~-~gvpiIADGGi~~sGDI~KAlaaGAd~V 239 (346)
T PRK05096 169 ILSGADIVKVGIGPGSVCTTRVKTGVGY------PQ--LSAVIECADAAHG-LGGQIVSDGGCTVPGDVAKAFGGGADFV 239 (346)
T ss_pred HHcCCCEEEEcccCCccccCccccccCh------hH--HHHHHHHHHHHHH-cCCCEEecCCcccccHHHHHHHcCCCEE
Confidence 4699999987421 222233221 22 333433 3343 3899999999999999999999999999
Q ss_pred EEchHHhhCCc
Q 017148 234 MVGRAAYQNPW 244 (376)
Q Consensus 234 miGRa~l~~P~ 244 (376)
|+|+-|-+.-.
T Consensus 240 MlGsllAGt~E 250 (346)
T PRK05096 240 MLGGMLAGHEE 250 (346)
T ss_pred EeChhhcCccc
Confidence 99998877654
No 94
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.97 E-value=1.8e-08 Score=94.03 Aligned_cols=144 Identities=20% Similarity=0.251 Sum_probs=94.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+-|++++++|+-.|------|.+ .|+.+ |-+-+++|+.+.+|-+ .+++||.-|+|.|. +.| ++
T Consensus 21 eqa~iae~aga~avm~le~~p~d--~r~~g-gv~R~~~p~~I~~I~~----~V~iPVig~~kigh-----~~E-----a~ 83 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPAD--IRASG-GVARMSDPKMIKEIMD----AVSIPVMAKVRIGH-----FVE-----AQ 83 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchh--hHhcC-CeeecCCHHHHHHHHH----hCCCCEEEEeeccH-----HHH-----HH
Confidence 46789999998777655456765 35555 8889999987766654 46899999999873 111 12
Q ss_pred HhhcCCccEEEEccC-----------------------------------------ccccCCCCC---------------
Q 017148 161 VSSLSPTRHFIIHSR-----------------------------------------KALLNGISP--------------- 184 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r-----------------------------------------~~~~~g~~~--------------- 184 (376)
.+++.|+|.|.-+-+ |....|+..
T Consensus 84 ~L~~~GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~ 163 (287)
T TIGR00343 84 ILEALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEI 163 (287)
T ss_pred HHHHcCCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHH
Confidence 233444444432211 000001100
Q ss_pred -------CCC-----CCCCcccHHHHHHHHhhCCCCeEE--EecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 185 -------AEN-----RTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 185 -------~~~-----~~~~~~~~~~v~~~~~~~~~ipVi--~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+. ..-....++.+.++++.. ++||+ +.|||.|++++..+++.|||+|++|+++...
T Consensus 164 ~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks 234 (287)
T TIGR00343 164 RQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS 234 (287)
T ss_pred HHHhcccchhHHhhhhcccCCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcC
Confidence 000 000123478888888764 89998 9999999999999999999999999999853
No 95
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.96 E-value=6.1e-08 Score=99.30 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=81.6
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHH
Q 017148 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
++.+.++|+|.|-|.+ + + | +...+.+.++.+|+.. +.+|.++ ++ .+.++.. .
T Consensus 253 ~~~l~~ag~d~i~iD~--~------~---g-----~~~~~~~~i~~ik~~~p~~~vi~g---~v---~t~e~a~-----~ 305 (505)
T PLN02274 253 LEHLVKAGVDVVVLDS--S------Q---G-----DSIYQLEMIKYIKKTYPELDVIGG---NV---VTMYQAQ-----N 305 (505)
T ss_pred HHHHHHcCCCEEEEeC--C------C---C-----CcHHHHHHHHHHHHhCCCCcEEEe---cC---CCHHHHH-----H
Confidence 3344456777776653 1 1 1 2345667788888765 4566553 11 2344432 2
Q ss_pred hhcCCccEEEEc--cCccccC-CCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 162 SSLSPTRHFIIH--SRKALLN-GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 162 ~e~~Gvd~I~vh--~r~~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
+.++|+|.|.|. ++..... ...+..... ...+..+.++.++. ++|||+.|||.++.|+.++|+.|||+||+|+.
T Consensus 306 a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~--~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~GA~~V~vGs~ 382 (505)
T PLN02274 306 LIQAGVDGLRVGMGSGSICTTQEVCAVGRGQ--ATAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLGASTVMMGSF 382 (505)
T ss_pred HHHcCcCEEEECCCCCccccCccccccCCCc--ccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchh
Confidence 346999999874 3321100 000000001 11245567777664 89999999999999999999999999999999
Q ss_pred HhhCCc
Q 017148 239 AYQNPW 244 (376)
Q Consensus 239 ~l~~P~ 244 (376)
+...-.
T Consensus 383 ~~~t~E 388 (505)
T PLN02274 383 LAGTTE 388 (505)
T ss_pred hccccc
Confidence 987544
No 96
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.95 E-value=1.6e-08 Score=95.04 Aligned_cols=183 Identities=11% Similarity=0.105 Sum_probs=110.4
Q ss_pred HHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCC-CCCCEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCC
Q 017148 23 HYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSP-EQHPIVLQIGG--SNLDNLAKATELANAYNYDEINLNCG 99 (376)
Q Consensus 23 ~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~-~~~p~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~g 99 (376)
.+.......|.-.++++........ ...+..-+..+.. .+.| +|+.| .+.++.. .+..+|++.|-+
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~~~--~~~n~~~i~~i~~~~~~p--v~~~GGi~s~~d~~----~~~~~Ga~~viv--- 102 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASSEG--RTTMIDVVERTAETVFIP--LTVGGGIKSIEDVD----KLLRAGADKVSI--- 102 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCccccc--ChhhHHHHHHHHHhcCCC--EEEECCCCCHHHHH----HHHHcCCCEEEE---
Confidence 4444445566445666666554211 1111111111111 2333 45554 3444433 334468888755
Q ss_pred CCCccccCCCCccccccCCHHHHHHHHHHHh-ccc--Cc-----cE------EEEecCCCCCC-ccHHHHHHHHHHHhhc
Q 017148 100 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANT--NV-----PV------SVKCRIGVDDH-DSYNQLCDFIYKVSSL 164 (376)
Q Consensus 100 cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~-~~~--~~-----pv------~vKiR~g~~~~-~~~~~~~~~i~~~~e~ 164 (376)
|.+++.+|+++.++.+..- +.+ .+ ++ -||+|.+++.. .+..++ .+.+++
T Consensus 103 ------------gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~----~~~l~~ 166 (254)
T TIGR00735 103 ------------NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEW----AKEVEK 166 (254)
T ss_pred ------------ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHH----HHHHHH
Confidence 4556678999999887763 222 22 21 47888755432 223232 334568
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhC
Q 017148 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQN 242 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~ 242 (376)
.|++.|.+|+++.. |+. ...+++++.++++. +++|||++|||.+++|+.++++ .+||+|++|+++...
T Consensus 167 ~G~~~iivt~i~~~--g~~-------~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 167 LGAGEILLTSMDKD--GTK-------SGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred cCCCEEEEeCcCcc--cCC-------CCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 99999999987652 211 11247888888776 4899999999999999999999 459999999997543
No 97
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.92 E-value=1.2e-07 Score=96.17 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecCCCCCCccHHHH
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
++.+.++. .+.++|+|.|.|+... | +...+.+.++.+++. .+.||.++-= .+.++.
T Consensus 223 ~~~~~r~~-~L~~aG~d~I~vd~a~-----------g-----~~~~~~~~i~~i~~~~~~~~vi~G~v------~t~~~a 279 (450)
T TIGR01302 223 EFDKERAE-ALVKAGVDVIVIDSSH-----------G-----HSIYVIDSIKEIKKTYPDLDIIAGNV------ATAEQA 279 (450)
T ss_pred hhHHHHHH-HHHHhCCCEEEEECCC-----------C-----cHhHHHHHHHHHHHhCCCCCEEEEeC------CCHHHH
Confidence 34455554 5566899999997532 1 224577888999887 4788888422 233332
Q ss_pred HHHHHHHhhcCCccEEEEc--cCc----cccCCCCCCCCCCCCcccHHHHHHH---HhhCCCCeEEEecCCCCHHHHHHH
Q 017148 155 CDFIYKVSSLSPTRHFIIH--SRK----ALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAA 225 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh--~r~----~~~~g~~~~~~~~~~~~~~~~v~~~---~~~~~~ipVi~nGgI~s~~da~~~ 225 (376)
. .+.++|+|+|.|. ++. +...|.+ .+. +..+.++ .++. ++|||+.|||+++.|+.++
T Consensus 280 ~-----~l~~aGad~i~vg~g~G~~~~t~~~~~~g------~p~--~~~i~~~~~~~~~~-~vpviadGGi~~~~di~kA 345 (450)
T TIGR01302 280 K-----ALIDAGADGLRVGIGPGSICTTRIVAGVG------VPQ--ITAVYDVAEYAAQS-GIPVIADGGIRYSGDIVKA 345 (450)
T ss_pred H-----HHHHhCCCEEEECCCCCcCCccceecCCC------ccH--HHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHH
Confidence 2 2346999999864 221 1111111 111 3444444 3333 7999999999999999999
Q ss_pred HHcCcCeeEEchHHhhCCchh
Q 017148 226 LRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 226 l~~Gad~VmiGRa~l~~P~lf 246 (376)
++.|||+||+|+.+....+..
T Consensus 346 la~GA~~V~~G~~~a~~~e~p 366 (450)
T TIGR01302 346 LAAGADAVMLGSLLAGTTESP 366 (450)
T ss_pred HHcCCCEEEECchhhcCCcCC
Confidence 999999999999998877654
No 98
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.91 E-value=2.8e-07 Score=84.50 Aligned_cols=201 Identities=15% Similarity=0.174 Sum_probs=121.2
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhcc-CCCCCCEEEEecC-CCHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~-~~~~~p~~vQL~g-~~~~~ 78 (376)
|++.+|+.|+++- -+.+.+... +...++.| +.++..-.=..+ +. ......+++. ...+..+..|-.| .+.++
T Consensus 3 i~~~~~~SRl~~G-tgky~s~~~~~~ai~aSg-~~ivTva~rR~~-~~--~~~~~~~~~~i~~~~~~~lpNTaG~~ta~e 77 (248)
T cd04728 3 IGGKTFSSRLLLG-TGKYPSPAIMKEAIEASG-AEIVTVALRRVN-IG--DPGGESFLDLLDKSGYTLLPNTAGCRTAEE 77 (248)
T ss_pred ECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CCEEEEEEEecc-cC--CCCcchHHhhccccCCEECCCCCCCCCHHH
Confidence 7899999999985 334555554 44455554 665532222222 11 1111223322 2233334444444 46888
Q ss_pred HHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-c-CccEEEEecCCCCCCccHHHHH
Q 017148 79 LAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-T-NVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 79 ~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~-~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
-+..|+++.++ |-|+|-|- +..... .|+.|+....+-.+.+.+. . -+|+.. +| ..
T Consensus 78 Av~~a~lare~~~~~~iKlE-------Vi~d~~---~Llpd~~~tv~aa~~L~~~Gf~vlpyc~------dd---~~--- 135 (248)
T cd04728 78 AVRTARLAREALGTDWIKLE-------VIGDDK---TLLPDPIETLKAAEILVKEGFTVLPYCT------DD---PV--- 135 (248)
T ss_pred HHHHHHHHHHHhCCCeEEEE-------EecCcc---ccccCHHHHHHHHHHHHHCCCEEEEEeC------CC---HH---
Confidence 99999999886 45777663 222222 3666666655555554321 1 223322 22 22
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017148 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+++.+++.|++.|-.+|..-. +|. ...+.+++..+++. +++|||+.|||.+++|+.++++.|||+|++
T Consensus 136 --~ar~l~~~G~~~vmPlg~pIG-sg~--------Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 136 --LAKRLEDAGCAAVMPLGSPIG-SGQ--------GLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred --HHHHHHHcCCCEeCCCCcCCC-CCC--------CCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 134456789999966554321 111 12236777777776 589999999999999999999999999999
Q ss_pred chHHhh
Q 017148 236 GRAAYQ 241 (376)
Q Consensus 236 GRa~l~ 241 (376)
|+|+..
T Consensus 204 ~SAIt~ 209 (248)
T cd04728 204 NTAIAK 209 (248)
T ss_pred ChHhcC
Confidence 999974
No 99
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.87 E-value=5.2e-08 Score=89.16 Aligned_cols=144 Identities=21% Similarity=0.351 Sum_probs=103.9
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC--
Q 017148 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-- 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~-- 143 (376)
++-+|+.|.-.+ .+.++.+.++|++.+-+ |+.-..+|+++.++++..-.. +-|.+-.|.
T Consensus 75 ~~~vQvGGGIRs--~~~v~~ll~~G~~rVii---------------Gt~av~~p~~v~~~~~~~g~r--ivv~lD~r~g~ 135 (241)
T COG0106 75 DVPVQVGGGIRS--LEDVEALLDAGVARVII---------------GTAAVKNPDLVKELCEEYGDR--IVVALDARDGK 135 (241)
T ss_pred CCCEEeeCCcCC--HHHHHHHHHCCCCEEEE---------------ecceecCHHHHHHHHHHcCCc--EEEEEEccCCc
Confidence 566899875322 23455566689877754 555578999999999987643 334444443
Q ss_pred ----CCCCCc--cHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017148 144 ----GVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 144 ----g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
||.+.. ++.++ .+.+++.|+..|.+|. +....+|. +++.+.++.+.+ ++|||++||
T Consensus 136 vav~GW~e~s~~~~~~l----~~~~~~~g~~~ii~TdI~~DGtl~G~-----------n~~l~~~l~~~~-~ipviaSGG 199 (241)
T COG0106 136 VAVSGWQEDSGVELEEL----AKRLEEVGLAHILYTDISRDGTLSGP-----------NVDLVKELAEAV-DIPVIASGG 199 (241)
T ss_pred cccccccccccCCHHHH----HHHHHhcCCCeEEEEecccccccCCC-----------CHHHHHHHHHHh-CcCEEEecC
Confidence 676643 34444 3445689999999985 33344442 378888888876 999999999
Q ss_pred CCCHHHHHHHHHc-CcCeeEEchHHhhCCc
Q 017148 216 INTVDEVNAALRK-GAHHVMVGRAAYQNPW 244 (376)
Q Consensus 216 I~s~~da~~~l~~-Gad~VmiGRa~l~~P~ 244 (376)
|.|.+|++.+.+. |+++|.+||+++..-.
T Consensus 200 v~s~~Di~~l~~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 200 VSSLDDIKALKELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred cCCHHHHHHHHhcCCCcEEEEehHHhcCCC
Confidence 9999999999887 8999999999987654
No 100
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.86 E-value=5.5e-08 Score=90.86 Aligned_cols=155 Identities=16% Similarity=0.170 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHH-----HHHHHHhcccCccEE--EEecCCCC
Q 017148 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVG-----EAMSVIAANTNVPVS--VKCRIGVD 146 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~-----eiv~~v~~~~~~pv~--vKiR~g~~ 146 (376)
.+.+++.+.++.+++. +|.||||+-||.+. .| |..+.+....+. ++++++++.+++|+. +|+..-.
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~---ad--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~- 87 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPK---YD--GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYV- 87 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCC---CC--CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhh-
Confidence 4789999999999887 99999999999873 12 666677777777 899999988888974 5555411
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEcc-----------------------------Cccc---------cC-----CCC
Q 017148 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHS-----------------------------RKAL---------LN-----GIS 183 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~-----------------------------r~~~---------~~-----g~~ 183 (376)
...++.++ .+.++|+|.|++|. .|.. .. +..
T Consensus 88 --~~~~~~i~----~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 88 --DSLDNFLN----MARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred --hCHHHHHH----HHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeC
Confidence 12222221 22356777777762 1100 00 000
Q ss_pred CCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 184 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 184 ~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+-......+...+.+.++++..++.||+.-|||.+++++.++++.|||+|.+|++++.
T Consensus 162 ~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 162 PATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0000111111133555555544468999999999999999999999999999999874
No 101
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=98.84 E-value=4.9e-09 Score=99.08 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHH
Q 017148 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~ 153 (376)
++...+.+.+...+++|.|..|+|+.||... ..+| .|.++-..|..+.||...|+..+.+|+.-|+.+++.+..++..
T Consensus 215 ynk~~w~el~d~~eqag~d~lE~nlscphgm-~erg-mgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~revar 292 (471)
T KOG1799|consen 215 YNKKCWMELNDSGEQAGQDDLETNLSCPHGM-CERG-MGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITDKREVAR 292 (471)
T ss_pred hhhhhHHHHhhhHHhhcccchhccCCCCCCC-cccc-ccceeccChhhhHHHhhhhhhccccccccccCCCcccccccch
Confidence 4567888899999999999999999999975 4345 4999999999999999999999999999999998877543322
Q ss_pred HH--------HHHHHHhhcCCccEEEEc------cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017148 154 LC--------DFIYKVSSLSPTRHFIIH------SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 154 ~~--------~~i~~~~e~~Gvd~I~vh------~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
.. ..+..+..--|+|+=++- +++ .++|++. ..+.|..+..+..+++.....|+.+.|||.+.
T Consensus 293 ~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~s-T~GG~S~---~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~ 368 (471)
T KOG1799|consen 293 SVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYS-TPGGYSY---KAVRPIALAKVMNIAKMMKEFSLSGIGGVETG 368 (471)
T ss_pred hcCcccccchhhHhHHHHHhcccccccCCCccccccc-CCCCccc---cccchHHHHHHHHHHHHhhcCccccccCcccc
Confidence 11 111222222233332221 221 2344443 45667767766667666657789999999999
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 220 DEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.|+.+++..|+..|++.+|.+..-+-
T Consensus 369 ~~~~~Fil~Gs~~vQVCt~V~~~~~~ 394 (471)
T KOG1799|consen 369 YDAAEFILLGSNTVQVCTGVMMHGYG 394 (471)
T ss_pred cchhhHhhcCCcHhhhhhHHHhcCcc
Confidence 99999999999999999999877753
No 102
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.79 E-value=2.2e-07 Score=85.17 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=44.4
Q ss_pred HHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 195 YEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 195 ~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+.+.++++.. .++||++.|||.+++++.++++.|||+|.+|++++..+..
T Consensus 159 ~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p 210 (217)
T cd00331 159 LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDP 210 (217)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence 56677777665 3799999999999999999999999999999999987763
No 103
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.77 E-value=1.4e-06 Score=80.11 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=118.8
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCHHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNLDNL 79 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~~~~ 79 (376)
|++.+|++|+++- -+.+.+... +...++.| +.++..-.=..+ +.........++ ...+..+..+-.| .+.++-
T Consensus 4 i~~~~~~SRl~~G-tgky~s~~~~~~ai~asg-~~ivTvalrR~~-~~~~~~~~~~~i--~~~~~~~lpNTaG~~ta~eA 78 (250)
T PRK00208 4 IAGKTFSSRLLLG-TGKYPSPQVMQEAIEASG-AEIVTVALRRVN-LGQGGDNLLDLL--PPLGVTLLPNTAGCRTAEEA 78 (250)
T ss_pred ECCEEeeccceEe-cCCCCCHHHHHHHHHHhC-CCeEEEEEEeec-CCCCcchHHhhc--cccCCEECCCCCCCCCHHHH
Confidence 6899999999985 344655555 44455554 665532222222 111112222222 2233334445444 468889
Q ss_pred HHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHH
Q 017148 80 AKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
+..|+++.++ |-++|-|- |...+. .++.|+....+-.+.+.+. ++-+.--+. ++ ...
T Consensus 79 v~~a~lare~~~~~~iKlE-------Vi~d~~---~llpd~~~tv~aa~~L~~~-Gf~vlpyc~---~d---~~~----- 136 (250)
T PRK00208 79 VRTARLAREALGTNWIKLE-------VIGDDK---TLLPDPIETLKAAEILVKE-GFVVLPYCT---DD---PVL----- 136 (250)
T ss_pred HHHHHHHHHHhCCCeEEEE-------EecCCC---CCCcCHHHHHHHHHHHHHC-CCEEEEEeC---CC---HHH-----
Confidence 9999999886 45777663 232222 2445555554444444221 222221111 22 221
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.|-.+|..-. +|. ...+.+.+..+++. +++|||..|||.+++|+.++++.|||+|++|+|
T Consensus 137 ak~l~~~G~~~vmPlg~pIG-sg~--------gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SA 206 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIG-SGL--------GLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCC--------CCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 34456789999966554321 111 12235667777766 589999999999999999999999999999999
Q ss_pred Hhh
Q 017148 239 AYQ 241 (376)
Q Consensus 239 ~l~ 241 (376)
+..
T Consensus 207 Itk 209 (250)
T PRK00208 207 IAV 209 (250)
T ss_pred hhC
Confidence 975
No 104
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.77 E-value=1.9e-07 Score=87.24 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=97.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC-C-----------
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-D----------- 147 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~-~----------- 147 (376)
++-|+.++++|+-.|-.----|.. .|+-+ |-+-+++|+.+.+| ++.+++||.-+++.++- +
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~--~~~~~-~v~R~~~~~~I~~I----k~~V~iPVIGi~K~~~~~Ea~~L~eaGvDi 90 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPAD--IRAAG-GVARMADPKMIKEI----MDAVSIPVMAKVRIGHFVEAQILEALGVDM 90 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchh--hhhcC-CeeecCCHHHHHHH----HHhCCCCeEEeeehhHHHHHHHHHHcCCCE
Confidence 356788999998777665455665 24444 77788888766554 55678999999887630 0
Q ss_pred ---C---ccHHHHHHHHH-----------------HHhhcCCccEEEEc--cCccc-----------------cCCCCCC
Q 017148 148 ---H---DSYNQLCDFIY-----------------KVSSLSPTRHFIIH--SRKAL-----------------LNGISPA 185 (376)
Q Consensus 148 ---~---~~~~~~~~~i~-----------------~~~e~~Gvd~I~vh--~r~~~-----------------~~g~~~~ 185 (376)
. ...+++...+. ....+.|+|.|--+ |.|.. ..|+...
T Consensus 91 IDaT~r~rP~~~~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~ 170 (283)
T cd04727 91 IDESEVLTPADEEHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEE 170 (283)
T ss_pred EeccCCCCcHHHHHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 0 00111111111 11234566665432 23321 0111110
Q ss_pred CC---CCCCcccHHHHHHHHhhCCCCeEE--EecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 186 EN---RTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 186 ~~---~~~~~~~~~~v~~~~~~~~~ipVi--~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.. .......|+.+.++++.. ++||| +.|||.+++++.++++.|||+|++|++++..+.
T Consensus 171 t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~d 233 (283)
T cd04727 171 ELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSEN 233 (283)
T ss_pred HHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCC
Confidence 00 001234588899988865 79997 999999999999999999999999999986433
No 105
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.76 E-value=3.9e-07 Score=93.41 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017148 120 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 120 ~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
..+.+.++.+++.. +.||.++- . .+.++.. .+.++|+|+|.|-.+.....+. ..........++.+
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g~---v---~t~e~a~-----~l~~aGad~i~vg~g~gs~~~~--r~~~~~g~p~~~~~ 320 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAGN---V---ATAEAAR-----ALIEAGADAVKVGIGPGSICTT--RIVAGVGVPQITAI 320 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEec---c---CCHHHHH-----HHHHcCCCEEEECCCCCccccc--eeecCCCcCHHHHH
Confidence 34666777777765 67777731 1 2333322 2346999999874321100000 00000111125666
Q ss_pred HHHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 199 YALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 199 ~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
.++.+.. .++|||+.|||+++.|+.++++.|||+||+|+.+-..-
T Consensus 321 ~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~ 367 (486)
T PRK05567 321 ADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTE 367 (486)
T ss_pred HHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccc
Confidence 5555432 37999999999999999999999999999999886553
No 106
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.76 E-value=7.2e-07 Score=79.77 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=108.1
Q ss_pred CCCEEEEecCCC----HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccE
Q 017148 64 QHPIVLQIGGSN----LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPV 137 (376)
Q Consensus 64 ~~p~~vQL~g~~----~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv 137 (376)
..|+++++..++ .++..+.++.+.++|+|+|.+.. |. +.....+.+.+.+.++++.+.+ ++|+
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~pv 116 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI---------GSLKEGDWEEVLEEIAAVVEAADGGLPL 116 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH---------HHHhCCCHHHHHHHHHHHHHHhcCCceE
Confidence 578999998887 88899999999999999999852 21 1111125788888888888874 8999
Q ss_pred EEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCC
Q 017148 138 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGI 216 (376)
Q Consensus 138 ~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI 216 (376)
.++..++.. .+.+.+.+ +.+++++.|++.|..+.+.. .+ ..++..+.++++..+ ++||+..||+
T Consensus 117 ~iy~~p~~~--~~~~~~~~-~~~~~~~~g~~~iK~~~~~~--~~----------~~~~~~~~~i~~~~~~~~~v~~~gg~ 181 (201)
T cd00945 117 KVILETRGL--KTADEIAK-AARIAAEAGADFIKTSTGFG--GG----------GATVEDVKLMKEAVGGRVGVKAAGGI 181 (201)
T ss_pred EEEEECCCC--CCHHHHHH-HHHHHHHhCCCEEEeCCCCC--CC----------CCCHHHHHHHHHhcccCCcEEEECCC
Confidence 999988765 12333333 23445678999998875431 11 112566667766554 6899999999
Q ss_pred CCHHHHHHHHHcCcCeeEEc
Q 017148 217 NTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiG 236 (376)
.+++.+.+++..||+++.+|
T Consensus 182 ~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 182 KTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCHHHHHHHHHhccceeecC
Confidence 99999999999999999876
No 107
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.74 E-value=4.2e-08 Score=92.14 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=66.6
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.|++|.+++...+. +.+++.++++.+.. ++||+++|||.|.+|++++++.|||.|++|++
T Consensus 36 a~~~~~~G~~~i~i~dl~~~~~~~---------~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 36 AKRYNEEGADELVFLDITASSEGR---------DTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred HHHHHHcCCCEEEEEeCCcccccC---------cchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 344568999999999988632221 23488899988765 89999999999999999999999999999999
Q ss_pred HhhCCchhhH
Q 017148 239 AYQNPWYTLG 248 (376)
Q Consensus 239 ~l~~P~lf~~ 248 (376)
++.||+++.+
T Consensus 106 ~l~~p~~~~e 115 (253)
T PRK02083 106 AVANPELISE 115 (253)
T ss_pred HhhCcHHHHH
Confidence 9999998643
No 108
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.73 E-value=1.5e-07 Score=86.45 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=86.5
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
-++.+.++|+|.|-++...-. ..+ + +.+.++++++++..++++.+.+. +.++.. .
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~----~p~--~-------~~~~~~i~~~~~~g~~~iiv~v~-------t~~ea~-----~ 138 (219)
T cd04729 84 EVDALAAAGADIIALDATDRP----RPD--G-------ETLAELIKRIHEEYNCLLMADIS-------TLEEAL-----N 138 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCC----CCC--C-------cCHHHHHHHHHHHhCCeEEEECC-------CHHHHH-----H
Confidence 457788899999988753211 000 1 25567777776654577777432 233322 2
Q ss_pred hhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 162 SSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.+.|+|+|.+ |+++...... ....++.+.++++.. ++||+++|||.+++++.++++.|||+|++|+++
T Consensus 139 a~~~G~d~i~~~~~g~t~~~~~~--------~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal 209 (219)
T cd04729 139 AAKLGFDIIGTTLSGYTEETAKT--------EDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred HHHcCCCEEEccCccccccccCC--------CCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHH
Confidence 34689999976 3443211111 112367888887765 899999999999999999999999999999997
Q ss_pred hhCCc
Q 017148 240 YQNPW 244 (376)
Q Consensus 240 l~~P~ 244 (376)
+...+
T Consensus 210 ~~~~~ 214 (219)
T cd04729 210 TRPEH 214 (219)
T ss_pred hChHh
Confidence 66555
No 109
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.73 E-value=5.8e-08 Score=87.35 Aligned_cols=146 Identities=22% Similarity=0.311 Sum_probs=95.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
.+-|++++++|+-+|------|.+ .|+.+ |-+-|.||..+.+|+.+| .+||..|+|+|-- .| +
T Consensus 30 ~EQA~IAE~aGAvAVMaLervPaD--iR~aG-GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~-----~E-----A 92 (296)
T COG0214 30 AEQARIAEEAGAVAVMALERVPAD--IRAAG-GVARMADPKMIEEIMDAV----SIPVMAKVRIGHF-----VE-----A 92 (296)
T ss_pred HHHHHHHHhcCceeEeehhhCcHH--HHhcc-CccccCCHHHHHHHHHhc----ccceeeeeecchh-----HH-----H
Confidence 356788999998777655556765 34555 888999999999888775 5999999999721 11 4
Q ss_pred HHhhcCCccEEEEc-----------------------c-Cc------------cc--cCCCCCCCC--CCC---------
Q 017148 160 KVSSLSPTRHFIIH-----------------------S-RK------------AL--LNGISPAEN--RTI--------- 190 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh-----------------------~-r~------------~~--~~g~~~~~~--~~~--------- 190 (376)
+++|..|+|+|.=+ | |. .+ .+|..+..+ +.+
T Consensus 93 ~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~e 172 (296)
T COG0214 93 QILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGE 172 (296)
T ss_pred HHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 56677888887511 1 10 00 011111000 000
Q ss_pred ----Ccc--------------cHHHHHHHHhhCCCCeE--EEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 191 ----PPL--------------KYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 191 ----~~~--------------~~~~v~~~~~~~~~ipV--i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
... .++++.++.+. .++|| ++.|||-||.|+.-+++.|||||.+|.|++...
T Consensus 173 I~~l~~~~edel~~~Ak~~~~p~elv~~~~~~-grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~ 244 (296)
T COG0214 173 IRRLQSMTEDELYVVAKELQAPYELVKEVAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS 244 (296)
T ss_pred HHHHHccCHHHHHHHHHHhCChHHHHHHHHHh-CCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCC
Confidence 000 03344444433 36887 589999999999999999999999999987543
No 110
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.71 E-value=6.4e-08 Score=90.29 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=65.7
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.|++|..+.. +.. .+.+++.+.++++.. ++||+++|||.+.+|++++++.|||+|++||+
T Consensus 33 a~~~~~~G~~~i~i~d~~~~--~~~-------~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 33 AKRYNEQGADELVFLDITAS--SEG-------RETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred HHHHHHCCCCEEEEEcCCcc--ccc-------CcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceEEECch
Confidence 34567899999999988752 111 123578888888765 89999999999999999999999999999999
Q ss_pred HhhCCchhhH
Q 017148 239 AYQNPWYTLG 248 (376)
Q Consensus 239 ~l~~P~lf~~ 248 (376)
++.||+++.+
T Consensus 103 ~~~~p~~~~~ 112 (243)
T cd04731 103 AVENPELIRE 112 (243)
T ss_pred hhhChHHHHH
Confidence 9999998644
No 111
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.68 E-value=6.1e-07 Score=82.52 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=84.1
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
-++.+.++|+|.|-+.. |... +.+ | +.+.++++.+++..++++.+.+. +.+++. .
T Consensus 80 ~v~~a~~aGad~I~~d~--~~~~--~p~--~-------~~~~~~i~~~~~~~~i~vi~~v~-------t~ee~~-----~ 134 (221)
T PRK01130 80 EVDALAAAGADIIALDA--TLRP--RPD--G-------ETLAELVKRIKEYPGQLLMADCS-------TLEEGL-----A 134 (221)
T ss_pred HHHHHHHcCCCEEEEeC--CCCC--CCC--C-------CCHHHHHHHHHhCCCCeEEEeCC-------CHHHHH-----H
Confidence 35777889999887743 2110 000 1 34567777776644667665322 233432 2
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.+.|+|+|.++.+.. .+... ......++.+.++++.. ++||++.|||.+++++.++++.|||+|++|++++.
T Consensus 135 a~~~G~d~i~~~~~g~--t~~~~----~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 135 AQKLGFDFIGTTLSGY--TEETK----KPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HHHcCCCEEEcCCcee--ecCCC----CCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 4578999998753211 01000 01122367778887765 89999999999999999999999999999998754
Q ss_pred CCch
Q 017148 242 NPWY 245 (376)
Q Consensus 242 ~P~l 245 (376)
|..
T Consensus 208 -~~~ 210 (221)
T PRK01130 208 -PEE 210 (221)
T ss_pred -CHH
Confidence 544
No 112
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.62 E-value=2.4e-06 Score=80.60 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=97.4
Q ss_pred CCCCEEEEecCCCH--------HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC
Q 017148 63 EQHPIVLQIGGSNL--------DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN 134 (376)
Q Consensus 63 ~~~p~~vQL~g~~~--------~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~ 134 (376)
...+++..+-..+| .+..+.|+..+++|+++|-++. ....||++ .+.++++++.++
T Consensus 48 ~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt--------e~~~f~g~--------~~~l~~v~~~v~ 111 (260)
T PRK00278 48 GKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT--------DERFFQGS--------LEYLRAARAAVS 111 (260)
T ss_pred CCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec--------ccccCCCC--------HHHHHHHHHhcC
Confidence 34567777754333 2457778888889999996642 23345655 356677777788
Q ss_pred ccEEEEecC------------CCC---------CCccHHHHHHHHH----------------HHhhcCCccEEEEccCcc
Q 017148 135 VPVSVKCRI------------GVD---------DHDSYNQLCDFIY----------------KVSSLSPTRHFIIHSRKA 177 (376)
Q Consensus 135 ~pv~vKiR~------------g~~---------~~~~~~~~~~~i~----------------~~~e~~Gvd~I~vh~r~~ 177 (376)
+||..|--+ |-| +..++.++++... ..+.+.|+|.|-+|+|+.
T Consensus 112 iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 112 LPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNL 191 (260)
T ss_pred CCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCc
Confidence 999876322 100 0011222221100 012234555555554432
Q ss_pred ccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 178 LLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
. ......+.+.++.+..++ +|+|+-|||.+++++.++++.|+|+|.+|++++..+..
T Consensus 192 ~-----------~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp 249 (260)
T PRK00278 192 K-----------TFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDP 249 (260)
T ss_pred c-----------cccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence 1 111225566677766654 69999999999999999999999999999999988774
No 113
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.62 E-value=1.8e-07 Score=86.50 Aligned_cols=80 Identities=19% Similarity=0.340 Sum_probs=65.6
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|+|.++|+..+....+. +.+++.+.++.+.. ++||+++|||+++++++++++.|||.|++|++
T Consensus 35 a~~~~~~g~d~l~v~dl~~~~~~~---------~~~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~ 104 (234)
T cd04732 35 AKKWEEAGAKWLHVVDLDGAKGGE---------PVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTA 104 (234)
T ss_pred HHHHHHcCCCEEEEECCCccccCC---------CCCHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECch
Confidence 445567999999999876543221 12377888888765 89999999999999999999999999999999
Q ss_pred HhhCCchhhH
Q 017148 239 AYQNPWYTLG 248 (376)
Q Consensus 239 ~l~~P~lf~~ 248 (376)
++.||+++.+
T Consensus 105 ~l~dp~~~~~ 114 (234)
T cd04732 105 AVKNPELVKE 114 (234)
T ss_pred HHhChHHHHH
Confidence 9999998643
No 114
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.58 E-value=1.4e-06 Score=76.95 Aligned_cols=129 Identities=21% Similarity=0.242 Sum_probs=82.0
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
-++.+.++|+|.|-+.+ + .. .||+-+.++++++++.. ..+.. |..+++|...
T Consensus 56 ev~~l~~aGadIIAlDa-------T--~R------~Rp~~l~~li~~i~~~~-~l~MA-------Dist~ee~~~----- 107 (192)
T PF04131_consen 56 EVDALAEAGADIIALDA-------T--DR------PRPETLEELIREIKEKY-QLVMA-------DISTLEEAIN----- 107 (192)
T ss_dssp HHHHHHHCT-SEEEEE--------S--SS------S-SS-HHHHHHHHHHCT-SEEEE-------E-SSHHHHHH-----
T ss_pred HHHHHHHcCCCEEEEec-------C--CC------CCCcCHHHHHHHHHHhC-cEEee-------ecCCHHHHHH-----
Confidence 34456678999998864 1 11 35567889999999876 55544 3345666533
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.++|+|.|--. + .|+.+.. .. ...+++++.++++. ++|||+-|+|++++++.++++.||++|.+|.+. .
T Consensus 108 A~~~G~D~I~TT----L-sGYT~~t-~~-~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAI-T 177 (192)
T PF04131_consen 108 AAELGFDIIGTT----L-SGYTPYT-KG-DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAI-T 177 (192)
T ss_dssp HHHTT-SEEE-T----T-TTSSTTS-TT-SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHH-H
T ss_pred HHHcCCCEEEcc----c-ccCCCCC-CC-CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECccc-C
Confidence 357999987532 1 2222111 11 33468999998875 899999999999999999999999999999875 6
Q ss_pred CCchhhH
Q 017148 242 NPWYTLG 248 (376)
Q Consensus 242 ~P~lf~~ 248 (376)
+|++..+
T Consensus 178 rP~~It~ 184 (192)
T PF04131_consen 178 RPQEITK 184 (192)
T ss_dssp -HHHHHH
T ss_pred CHHHHHH
Confidence 7776543
No 115
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.57 E-value=3.1e-06 Score=82.07 Aligned_cols=135 Identities=10% Similarity=0.079 Sum_probs=102.0
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEE
Q 017148 62 PEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 140 (376)
Q Consensus 62 ~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vK 140 (376)
....|+..|+++.+++.+.+.++.+.+.||+.|.||+|. +++...++++++++.+ +.++.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~-----------------~~~~d~~~v~~lr~~~g~~~l~vD 183 (316)
T cd03319 121 PRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG-----------------DLEDDIERIRAIREAAPDARLRVD 183 (316)
T ss_pred CCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC-----------------ChhhHHHHHHHHHHhCCCCeEEEe
Confidence 355677789988899999999998888999999998652 2344567788888766 4788888
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017148 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
.+.+|+. ++..++ .+.+++.|+.+|. . .+++.+++.++++.+. .++||++++.+.+.+
T Consensus 184 ~n~~~~~----~~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~ 241 (316)
T cd03319 184 ANQGWTP----EEAVEL-LRELAELGVELIE----Q------------PVPAGDDDGLAYLRDK-SPLPIMADESCFSAA 241 (316)
T ss_pred CCCCcCH----HHHHHH-HHHHHhcCCCEEE----C------------CCCCCCHHHHHHHHhc-CCCCEEEeCCCCCHH
Confidence 8888875 233443 3455678888873 1 1122236777777765 489999999999999
Q ss_pred HHHHHHH-cCcCeeEE
Q 017148 221 EVNAALR-KGAHHVMV 235 (376)
Q Consensus 221 da~~~l~-~Gad~Vmi 235 (376)
++.++++ .++|.|++
T Consensus 242 ~~~~~~~~~~~d~v~~ 257 (316)
T cd03319 242 DAARLAGGGAYDGINI 257 (316)
T ss_pred HHHHHHhcCCCCEEEE
Confidence 9999999 78999987
No 116
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.52 E-value=1.3e-06 Score=85.98 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
++....+.++.+.++|+|.|-+|.-. +...|.+. -.+|..+.+++++ .++||.++ +. .+.++.
T Consensus 140 ~~~~~~e~a~~l~eAGad~I~ihgrt------~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G---~V---~t~e~A 202 (369)
T TIGR01304 140 SPQNAREIAPIVVKAGADLLVIQGTL------VSAEHVST-SGEPLNLKEFIGE----LDVPVIAG---GV---NDYTTA 202 (369)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccc------hhhhccCC-CCCHHHHHHHHHH----CCCCEEEe---CC---CCHHHH
Confidence 34567788888899999999998421 12223111 1256655555554 46898762 22 233332
Q ss_pred HHHHHHHhhcCCccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHHHH-------hhCC--CCeEEEecCCCCHHHHHH
Q 017148 155 CDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALL-------RDFP--DLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~~~-------~~~~--~ipVi~nGgI~s~~da~~ 224 (376)
. +++ ++|+|.|.+. ++........+ ..++. ...+.++. ++.. .+|||+.|||.+..|+.+
T Consensus 203 ~----~~~-~aGaDgV~~G~gg~~~~~~~lg---~~~p~--~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~k 272 (369)
T TIGR01304 203 L----HLM-RTGAAGVIVGPGGANTTRLVLG---IEVPM--ATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVK 272 (369)
T ss_pred H----HHH-HcCCCEEEECCCCCcccccccC---CCCCH--HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHH
Confidence 2 233 4899998842 22111111000 01121 23333332 1221 399999999999999999
Q ss_pred HHHcCcCeeEEchHHhhCCc
Q 017148 225 ALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 225 ~l~~Gad~VmiGRa~l~~P~ 244 (376)
++..|||+||+|+.++.--+
T Consensus 273 AlAlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 273 AIACGADAVVLGSPLARAAE 292 (369)
T ss_pred HHHcCCCEeeeHHHHHhhhc
Confidence 99999999999999987544
No 117
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=98.52 E-value=3.8e-07 Score=80.93 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=89.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+-|++++++|+-.+-.----|.+ .|..+ |-+-|.||+.+.||- .++.+||..|.|+|-- .| ++
T Consensus 32 eQA~iAE~aGACaVmalervPad--iR~~G-gV~RMsDP~mIKei~----~aVsiPVMAk~RiGHF-----VE-----AQ 94 (296)
T KOG1606|consen 32 EQARIAEEAGACAVMALERVPAD--IRAQG-GVARMSDPRMIKEIK----NAVSIPVMAKVRIGHF-----VE-----AQ 94 (296)
T ss_pred HHHHHHHhcCcceEeeeccCCHh--HHhcC-CeeecCCHHHHHHHH----Hhccchhhhhhhhhhh-----hH-----HH
Confidence 46788899997666554445654 34444 778899998776664 4567999999999721 11 34
Q ss_pred HhhcCCccEEEEc------------------------cCc------------cc--cCCCCCCCC--CCC----------
Q 017148 161 VSSLSPTRHFIIH------------------------SRK------------AL--LNGISPAEN--RTI---------- 190 (376)
Q Consensus 161 ~~e~~Gvd~I~vh------------------------~r~------------~~--~~g~~~~~~--~~~---------- 190 (376)
++|..|+|+|.=+ +|. ++ .+|..+..+ +.+
T Consensus 95 IlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~gei 174 (296)
T KOG1606|consen 95 ILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEI 174 (296)
T ss_pred HHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHH
Confidence 4555666665310 000 00 001100000 000
Q ss_pred ---Ccc--------------cHHHHHHHHhhCCCCeE--EEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 191 ---PPL--------------KYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 191 ---~~~--------------~~~~v~~~~~~~~~ipV--i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
... .++++.+.++ ...+|| ++.|||.||.|+.-+++.|||||.+|.|.+..++=
T Consensus 175 r~~~~m~~dev~t~Ak~i~aP~dLv~~t~q-~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP 247 (296)
T KOG1606|consen 175 RVLKNMDDDEVFTFAKEIAAPYDLVKQTKQ-LGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDP 247 (296)
T ss_pred HHHHcCCHHHHHHHHHHhcCcHHHHHHHHH-cCCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCH
Confidence 000 0333444333 346888 58999999999999999999999999999877663
No 118
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.50 E-value=3.9e-06 Score=78.48 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=98.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccC----CHHHHHHHHHHH-hcccCccEEE
Q 017148 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML----DPKFVGEAMSVI-AANTNVPVSV 139 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~----~~~~~~eiv~~v-~~~~~~pv~v 139 (376)
.++-+|+.|.-. . +.++.+-++|++-|-|| +...+ +|+++.++++.. .+.+-+-+.+
T Consensus 82 ~~~~vqvGGGIR--~-e~i~~~l~~Ga~rViig---------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~ 143 (262)
T PLN02446 82 YPGGLQVGGGVN--S-ENAMSYLDAGASHVIVT---------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSC 143 (262)
T ss_pred CCCCEEEeCCcc--H-HHHHHHHHcCCCEEEEc---------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 347789988764 3 67777888999988775 22233 499999999988 4443333333
Q ss_pred Ee--------cCCCCCCc--cHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017148 140 KC--------RIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 140 Ki--------R~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
|. .-||.+.. +..++ +.+. .+.|+..|.++. |..+..|. +++.+.++.+. ++
T Consensus 144 k~~~g~~~Va~~GW~~~t~~~~~e~---~~~~-~~~g~~eii~TdI~rDGtl~G~-----------d~el~~~l~~~-~~ 207 (262)
T PLN02446 144 RKKDGRYYVVTDRWQKFSDLAVDEE---TLEF-LAAYCDEFLVHGVDVEGKRLGI-----------DEELVALLGEH-SP 207 (262)
T ss_pred EecCCCEEEEECCCcccCCCCHHHH---HHHH-HHhCCCEEEEEEEcCCCcccCC-----------CHHHHHHHHhh-CC
Confidence 31 11565532 23333 2333 357899999874 44444442 27788888776 59
Q ss_pred CeEEEecCCCCHHHHHHHHHc--CcCeeEEchHHh
Q 017148 208 LTFTLNGGINTVDEVNAALRK--GAHHVMVGRAAY 240 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~~--Gad~VmiGRa~l 240 (376)
+|||++|||.+.+|+.++.+. |+.+|.+|++++
T Consensus 208 ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 208 IPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHH
Confidence 999999999999999999884 689999999984
No 119
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.50 E-value=5.3e-07 Score=84.74 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=65.7
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.+++.|++.|+++..+....+ ...+++.++++++.. ++||++.|||+|.+|+++++..||+.|++||++
T Consensus 37 ~~~~~~G~~~l~v~Dl~~~~~~---------~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~ 106 (254)
T TIGR00735 37 QRYDEEGADELVFLDITASSEG---------RTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAA 106 (254)
T ss_pred HHHHHcCCCEEEEEcCCccccc---------ChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 3456799999999987643111 123478888888765 899999999999999999999999999999999
Q ss_pred hhCCchhhHhhh
Q 017148 240 YQNPWYTLGHVD 251 (376)
Q Consensus 240 l~~P~lf~~~~~ 251 (376)
+.||+++ +++.
T Consensus 107 ~~~p~~~-~~~~ 117 (254)
T TIGR00735 107 VKNPELI-YELA 117 (254)
T ss_pred hhChHHH-HHHH
Confidence 9999986 4443
No 120
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.46 E-value=2e-06 Score=84.82 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
++..+.+-++.+.++|+|.|.+|..... ..|++.- .++..+.++++. .++||.++ +. .+.+..
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~------~~h~~~~-~~~~~i~~~ik~----~~ipVIaG---~V---~t~e~A 201 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVS------AEHVSKE-GEPLNLKEFIYE----LDVPVIVG---GC---VTYTTA 201 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchh------hhccCCc-CCHHHHHHHHHH----CCCCEEEe---CC---CCHHHH
Confidence 4455677888888999999999864221 1122110 145555555554 46888762 12 233332
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCC--CCCCCCcccHHHHHHHHh---hC------CCCeEEEecCCCCHHHHH
Q 017148 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPA--ENRTIPPLKYEYYYALLR---DF------PDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~--~~~~~~~~~~~~v~~~~~---~~------~~ipVi~nGgI~s~~da~ 223 (376)
.+++ ++|+|.|.+ |+.... +.... ..-.++. ...+.+..+ ++ .++|||+.|||.+..|+.
T Consensus 202 ----~~l~-~aGAD~V~V-G~G~Gs-~~~t~~~~g~g~p~--~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~dia 272 (368)
T PRK08649 202 ----LHLM-RTGAAGVLV-GIGPGA-ACTSRGVLGIGVPM--ATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIA 272 (368)
T ss_pred ----HHHH-HcCCCEEEE-CCCCCc-CCCCcccCCCCcCH--HHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHH
Confidence 2223 599999988 332210 11000 0001121 333433321 11 159999999999999999
Q ss_pred HHHHcCcCeeEEchHHhhCCch
Q 017148 224 AALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 224 ~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++..|||+||+|+.++....-
T Consensus 273 kAlalGAd~Vm~Gs~fa~t~Es 294 (368)
T PRK08649 273 KAIACGADAVMLGSPLARAAEA 294 (368)
T ss_pred HHHHcCCCeecccchhcccccC
Confidence 9999999999999999886543
No 121
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.42 E-value=9.6e-05 Score=67.37 Aligned_cols=205 Identities=15% Similarity=0.161 Sum_probs=113.2
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhcc-CCCCCCEEEEecC-CCHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~-~~~~~p~~vQL~g-~~~~~ 78 (376)
|++.+|++|+++- -+.+.+... +....+.| +.++.. .+.-..... ......+++. ...+..+..+-.| .+.++
T Consensus 2 i~g~~f~SRL~lG-Tgky~s~~~m~~ai~aSg-~evvTv-alRR~~~~~-~~~~~~~~~~i~~~~~~lLPNTaGc~tA~E 77 (247)
T PF05690_consen 2 IGGKEFRSRLILG-TGKYPSPEVMREAIEASG-AEVVTV-ALRRVNLGS-KPGGDNILDYIDRSGYTLLPNTAGCRTAEE 77 (247)
T ss_dssp ETTEEES-SEEEE--STSSSHHHHHHHHHHTT--SEEEE-ECCGSTTTS--TTCHHCCCCTTCCTSEEEEE-TT-SSHHH
T ss_pred cCCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CcEEEE-EEecccCCC-CCCCccHHHHhcccCCEECCcCCCCCCHHH
Confidence 6889999999985 344655554 44455554 655432 222111111 0112334433 3355667777766 47889
Q ss_pred HHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHH
Q 017148 79 LAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
-+..|+++.++ |-++|-|- |...+ -.|+-|+-...+-.+.+.+. ++-|.--+. +| .+
T Consensus 78 Av~~A~laRe~~~t~wIKLE-------Vi~D~---~~L~PD~~etl~Aae~Lv~e-GF~VlPY~~---~D------~v-- 135 (247)
T PF05690_consen 78 AVRTARLAREAFGTNWIKLE-------VIGDD---KTLLPDPIETLKAAEILVKE-GFVVLPYCT---DD------PV-- 135 (247)
T ss_dssp HHHHHHHHHHTTS-SEEEE---------BS-T---TT--B-HHHHHHHHHHHHHT-T-EEEEEE----S-------HH--
T ss_pred HHHHHHHHHHHcCCCeEEEE-------EeCCC---CCcCCChhHHHHHHHHHHHC-CCEEeecCC---CC------HH--
Confidence 99999999986 56787763 33222 23566665555544444432 444443322 11 11
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+++.+++.||..|-.-|--- =+|. ...+...++.++++. ++|||..+||-++.|+..+++.|||+|++.+
T Consensus 136 ~akrL~d~GcaavMPlgsPI-GSg~--------Gi~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 136 LAKRLEDAGCAAVMPLGSPI-GSGR--------GIQNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNT 205 (247)
T ss_dssp HHHHHHHTT-SEBEEBSSST-TT-----------SSTHHHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred HHHHHHHCCCCEEEeccccc-ccCc--------CCCCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 35667899999877644211 0111 112245667777776 9999999999999999999999999999999
Q ss_pred HHhhC
Q 017148 238 AAYQN 242 (376)
Q Consensus 238 a~l~~ 242 (376)
+.-.-
T Consensus 206 AiA~A 210 (247)
T PF05690_consen 206 AIAKA 210 (247)
T ss_dssp HHHTS
T ss_pred HHhcc
Confidence 87643
No 122
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.42 E-value=1.1e-06 Score=86.20 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCC---CCCCCCc
Q 017148 117 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP 192 (376)
Q Consensus 117 ~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~---~~~~~~~ 192 (376)
.+++-+.+.|+.+|+.. +.||+||+-.+.. .+.+ +....++|+|.|+|.|..... |.++. +.--+|.
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~----~~~~----~~~~~~ag~D~ItIDG~~GGT-GAap~~~~d~~GlP~ 255 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRG----VEDI----AAGAAKAGADFITIDGAEGGT-GAAPLTSMDHVGLPT 255 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT----HHHH----HHHHHHTT-SEEEEE-TT----SSEECCHHHHC---H
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCc----HHHH----HHhhhhccCCEEEEeCCCCCC-CCCchhHHhhCCCcH
Confidence 56788999999999988 8999999987532 2222 122347999999998765321 11110 0000110
Q ss_pred ccHHHHHH---H-HhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 193 LKYEYYYA---L-LRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 193 ~~~~~v~~---~-~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
...+.+ . .+.- -++.+|+.||+.|+.|+.+++..|||+|.+||++|--
T Consensus 256 --~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liA 309 (368)
T PF01645_consen 256 --EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIA 309 (368)
T ss_dssp --HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhh
Confidence 111222 1 2111 2589999999999999999999999999999999854
No 123
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.37 E-value=9.1e-05 Score=68.26 Aligned_cols=207 Identities=11% Similarity=0.067 Sum_probs=118.8
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhcc-CCCCCCEEEEecC-CCHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAF-SPEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~-~~~~~p~~vQL~g-~~~~~ 78 (376)
|++.++.+|+++- -+.+.+... ....++.| +.++..-.=..+ + ........+++. ...+..+..+-.| .+.++
T Consensus 10 i~g~~f~SRL~lG-Tgky~s~~~~~~ai~aSg-~evvTvalRR~~-~-~~~~~~~~~l~~i~~~~~~~LPNTaGc~tA~E 85 (267)
T CHL00162 10 IGNKSFNSRLMLG-TGKYKSLKDAIQSIEASG-CEIVTVAIRRLN-N-NLLNDNSNLLNGLDWNKLWLLPNTAGCQTAEE 85 (267)
T ss_pred ECCEEeecceEEe-cCCCCCHHHHHHHHHHhC-CcEEEEEEEEec-c-CcCCCcchHHHhhchhccEECCcCcCCCCHHH
Confidence 6788999999885 334655554 44455554 665432222222 1 100111222222 2233334444444 46788
Q ss_pred HHHHHHHHHHCC-------CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017148 79 LAKATELANAYN-------YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 79 ~~~aa~~~~~~G-------~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
-+..|+++.+++ -++|-|- |.... -.|+-|+-...+-.+.+.+. ++-|..-+. +|
T Consensus 86 Av~~A~laRe~~~~~~~~~~~wIKLE-------Vi~D~---~~LlPD~~etl~Aae~Lv~e-GF~VlPY~~---~D---- 147 (267)
T CHL00162 86 AIRMAFLGRELAKQLGQEDNNFVKLE-------VISDP---KYLLPDPIGTLKAAEFLVKK-GFTVLPYIN---AD---- 147 (267)
T ss_pred HHHHHHHHHHHhccccccCCCeEEEE-------EeCCC---cccCCChHHHHHHHHHHHHC-CCEEeecCC---CC----
Confidence 899999998864 5666553 22222 24666666555555544332 343333211 11
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
. .+++.+++.||.+|-.-|-- .=+|.+ ..+...++.++++ +++|||..+||.+++|+..+++.|||
T Consensus 148 --~--v~a~rLed~Gc~aVMPlgsP-IGSg~G--------l~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaD 213 (267)
T CHL00162 148 --P--MLAKHLEDIGCATVMPLGSP-IGSGQG--------LQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQAMELGAS 213 (267)
T ss_pred --H--HHHHHHHHcCCeEEeeccCc-ccCCCC--------CCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCC
Confidence 1 13566789999987654321 101111 1123445555554 58999999999999999999999999
Q ss_pred eeEEchHHhhCCc
Q 017148 232 HVMVGRAAYQNPW 244 (376)
Q Consensus 232 ~VmiGRa~l~~P~ 244 (376)
+|.+.+|...-++
T Consensus 214 gVL~nSaIakA~d 226 (267)
T CHL00162 214 GVLLNTAVAQAKN 226 (267)
T ss_pred EEeecceeecCCC
Confidence 9999999874433
No 124
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.36 E-value=5.6e-06 Score=84.89 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHH
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
++..+-++.+.++|+|.|+|.. . ++ ..+.+.+.++.+++..+.++.|+.-. ..+.+...+
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~--a------~g--------~~~~~~~~i~~ir~~~~~~~~V~aGn----V~t~e~a~~ 300 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDS--S------EG--------YSEWQKRTLDWIREKYGDSVKVGAGN----VVDREGFRY 300 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecC--c------cc--------ccHHHHHHHHHHHHhCCCCceEEecc----ccCHHHHHH
Confidence 3444555667778999999851 1 11 23456788899988765445554321 123333222
Q ss_pred HHHHHhhcCCccEEEE--ccCc----cccCCCCCCCCCCCCcccHHHHHHHHhh-------C-CCCeEEEecCCCCHHHH
Q 017148 157 FIYKVSSLSPTRHFII--HSRK----ALLNGISPAENRTIPPLKYEYYYALLRD-------F-PDLTFTLNGGINTVDEV 222 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~v--h~r~----~~~~g~~~~~~~~~~~~~~~~v~~~~~~-------~-~~ipVi~nGgI~s~~da 222 (376)
+.++|+|.|.| |+++ +...|.+. + .+..+.++.+. . .++|||+.|||++..|+
T Consensus 301 -----li~aGAd~I~vg~g~Gs~c~tr~~~~~g~------~--~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi 367 (502)
T PRK07107 301 -----LAEAGADFVKVGIGGGSICITREQKGIGR------G--QATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHM 367 (502)
T ss_pred -----HHHcCCCEEEECCCCCcCcccccccCCCc------c--HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHH
Confidence 23699999988 4442 21222211 1 24444444332 1 13999999999999999
Q ss_pred HHHHHcCcCeeEEchHHhhCC
Q 017148 223 NAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 223 ~~~l~~Gad~VmiGRa~l~~P 243 (376)
.++|..|||+||+||.+-+.-
T Consensus 368 ~KAla~GA~~vm~G~~~ag~~ 388 (502)
T PRK07107 368 TLALAMGADFIMLGRYFARFD 388 (502)
T ss_pred HHHHHcCCCeeeeChhhhccc
Confidence 999999999999999988754
No 125
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.32 E-value=1.8e-05 Score=73.54 Aligned_cols=139 Identities=17% Similarity=0.219 Sum_probs=92.2
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC----
Q 017148 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---- 143 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---- 143 (376)
=+|+.|.- ..+ +.++.+.++|++-|-| |+...++|+++.++.+..-+. +-+++-.+-
T Consensus 78 pi~vGGGI-rs~-e~v~~~l~~Ga~kvvi---------------gt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~ 138 (234)
T PRK13587 78 DIEVGGGI-RTK-SQIMDYFAAGINYCIV---------------GTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIK 138 (234)
T ss_pred eEEEcCCc-CCH-HHHHHHHHCCCCEEEE---------------CchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEE
Confidence 37887642 122 2345555678877644 555567899999998876432 222332222
Q ss_pred --CCCCCc--cHHHHHHHHHHHhhcCCccEEEEccC--ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017148 144 --GVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 144 --g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
||.+.. +..++++ .+++.|+..|.+..- .....|. +++.+.++.+. +++|||+.|||.
T Consensus 139 ~~gw~~~~~~~~~~~~~----~~~~~g~~~ii~tdi~~dGt~~G~-----------~~~li~~l~~~-~~ipvi~~GGi~ 202 (234)
T PRK13587 139 VNGWEEDTELNLFSFVR----QLSDIPLGGIIYTDIAKDGKMSGP-----------NFELTGQLVKA-TTIPVIASGGIR 202 (234)
T ss_pred ecCCcccCCCCHHHHHH----HHHHcCCCEEEEecccCcCCCCcc-----------CHHHHHHHHHh-CCCCEEEeCCCC
Confidence 454422 2344432 345689988877543 2233332 26777787765 489999999999
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhh
Q 017148 218 TVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
|.+|+.++++.|+++|.+|++++.
T Consensus 203 s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 203 HQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred CHHHHHHHHHcCCCEEEEhHHHHh
Confidence 999999999999999999999986
No 126
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.31 E-value=3.9e-05 Score=72.14 Aligned_cols=169 Identities=15% Similarity=0.202 Sum_probs=94.5
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHhcc-cCcc
Q 017148 67 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIAAN-TNVP 136 (376)
Q Consensus 67 ~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~~~-~~~p 136 (376)
++.=+.. .+.+...+.++.+.+.|+|.|||-+ |...-.-.| .+--+|. -+.+.+.++++++++. +++|
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGV--PFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 4444443 3678889999999999999999954 432111000 0000111 2557888999999976 6788
Q ss_pred EEEEecCC------CCC----------------CccHHHHHHHHHHHhhcCCccEE-EEccCcc---------c------
Q 017148 137 VSVKCRIG------VDD----------------HDSYNQLCDFIYKVSSLSPTRHF-IIHSRKA---------L------ 178 (376)
Q Consensus 137 v~vKiR~g------~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~---------~------ 178 (376)
+..=+-.+ .+. ...+++..+++ ..+.+.|++.+ .+..-+. .
T Consensus 90 lv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~-~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy 168 (256)
T TIGR00262 90 IGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLV-EAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVY 168 (256)
T ss_pred EEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHH-HHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEE
Confidence 64221111 000 00112211111 12233444433 1221110 0
Q ss_pred ---cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 179 ---LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 179 ---~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
..|.++.. ....+...+.+.++++. .+.||+.-|||.|++++.++.+.|||+|.+|++++
T Consensus 169 ~vs~~G~TG~~-~~~~~~~~~~i~~lr~~-~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 169 LVSRAGVTGAR-NRAASALNELVKRLKAY-SAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred EEECCCCCCCc-ccCChhHHHHHHHHHhh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 01222211 11222235667777664 47899999999999999999999999999999985
No 127
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.29 E-value=2.7e-05 Score=72.72 Aligned_cols=143 Identities=15% Similarity=0.175 Sum_probs=93.6
Q ss_pred CEEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe--
Q 017148 66 PIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-- 141 (376)
Q Consensus 66 p~~vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-- 141 (376)
++-+|+.|. +.+ .++.+-+.|+|-|-+ |+...++|+++.++.+...+.+-+-+-+|.
T Consensus 74 ~~~v~vgGGIrs~e----~~~~~l~~Ga~~vvi---------------gT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g 134 (243)
T TIGR01919 74 VVVEELSGGRRDDS----SLRAALTGGRARVNG---------------GTAALENPWWAAAVIRYGGDIVAVGLDVLEDG 134 (243)
T ss_pred CCCEEEcCCCCCHH----HHHHHHHcCCCEEEE---------------CchhhCCHHHHHHHHHHccccEEEEEEEecCC
Confidence 456788764 333 344455678887754 444557899999988876443222233331
Q ss_pred ------cCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017148 142 ------RIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 142 ------R~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
.-||.+. .+..+++ +.+++.|+..|.++. |....+|. +++.+.++.+. +++|||+
T Consensus 135 ~~~~v~~~Gw~~~~~~~~~~~----~~~~~~g~~~ii~tdI~~dGt~~G~-----------d~~l~~~l~~~-~~~pvia 198 (243)
T TIGR01919 135 EWHTLGNRGWSDGGGDLEVLE----RLLDSGGCSRVVVTDSKKDGLSGGP-----------NELLLEVVAAR-TDAIVAA 198 (243)
T ss_pred ceEEEECCCeecCCCcHHHHH----HHHHhCCCCEEEEEecCCcccCCCc-----------CHHHHHHHHhh-CCCCEEE
Confidence 1246541 1233332 334679999999874 33334442 26777777765 5899999
Q ss_pred ecCCCCHHHHHHHHH---cCcCeeEEchHHhhCC
Q 017148 213 NGGINTVDEVNAALR---KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 213 nGgI~s~~da~~~l~---~Gad~VmiGRa~l~~P 243 (376)
+|||.+.+|+.++-+ .|+++|.+|++++..-
T Consensus 199 sGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 199 SGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARF 232 (243)
T ss_pred ECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCC
Confidence 999999999998743 5999999999987654
No 128
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.27 E-value=1.6e-05 Score=73.58 Aligned_cols=143 Identities=16% Similarity=0.276 Sum_probs=92.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEEec---
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCR--- 142 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vKiR--- 142 (376)
+-+|+.|.-. .+ +.++.+.++|++-|-| |+...++|+++.++.+..-+ .+-+-+.+|-.
T Consensus 74 ~~i~vgGGIr-s~-ed~~~ll~~Ga~~Vvi---------------gt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v 136 (229)
T PF00977_consen 74 IPIQVGGGIR-SI-EDAERLLDAGADRVVI---------------GTEALEDPELLEELAERYGSQRIVVSLDARDGYKV 136 (229)
T ss_dssp SEEEEESSE--SH-HHHHHHHHTT-SEEEE---------------SHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEE
T ss_pred ccEEEeCccC-cH-HHHHHHHHhCCCEEEe---------------ChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEE
Confidence 6678877522 22 2344555678876544 55667889999999998755 22222223221
Q ss_pred --CCCCCC--ccHHHHHHHHHHHhhcCCccEEEEccC--ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC
Q 017148 143 --IGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 143 --~g~~~~--~~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
-||.+. .+..++++ .+++.|+..+.++.= ....+|. +++.+.++.+.+ ++|||++|||
T Consensus 137 ~~~gw~~~~~~~~~~~~~----~~~~~g~~~ii~tdi~~dGt~~G~-----------d~~~~~~l~~~~-~~~viasGGv 200 (229)
T PF00977_consen 137 ATNGWQESSGIDLEEFAK----RLEELGAGEIILTDIDRDGTMQGP-----------DLELLKQLAEAV-NIPVIASGGV 200 (229)
T ss_dssp EETTTTEEEEEEHHHHHH----HHHHTT-SEEEEEETTTTTTSSS-------------HHHHHHHHHHH-SSEEEEESS-
T ss_pred EecCccccCCcCHHHHHH----HHHhcCCcEEEEeeccccCCcCCC-----------CHHHHHHHHHHc-CCCEEEecCC
Confidence 145543 24555543 345789999998743 2233332 277778887776 9999999999
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 217 NTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.+.+|+.++.+.|+|+|.+|++++..
T Consensus 201 ~~~~Dl~~l~~~G~~gvivg~al~~g 226 (229)
T PF00977_consen 201 RSLEDLRELKKAGIDGVIVGSALHEG 226 (229)
T ss_dssp -SHHHHHHHHHTTECEEEESHHHHTT
T ss_pred CCHHHHHHHHHCCCcEEEEehHhhCC
Confidence 99999999999999999999999643
No 129
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.25 E-value=2.1e-05 Score=80.21 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=87.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHH
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
.+.++.+.++|.|.|-+... ++. ...+.+.++.+|+.. +.+|.+. +..+.+....
T Consensus 229 ~~~a~~Lv~aGvd~i~~D~a--------~~~--------~~~~~~~i~~ik~~~p~~~v~ag------nv~t~~~a~~-- 284 (479)
T PRK07807 229 AAKARALLEAGVDVLVVDTA--------HGH--------QEKMLEALRAVRALDPGVPIVAG------NVVTAEGTRD-- 284 (479)
T ss_pred HHHHHHHHHhCCCEEEEecc--------CCc--------cHHHHHHHHHHHHHCCCCeEEee------ccCCHHHHHH--
Confidence 34455566678888777531 111 367889999999875 5666551 2234544322
Q ss_pred HHHhhcCCccEEEEccCc---cccCCCCCCCCCCCCcccHHHHHHHHhh--CCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017148 159 YKVSSLSPTRHFIIHSRK---ALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~---~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
+.++|+|.|-|--++ +..++..+.. .| .+..+.++.+. ..++|||+.|||.++.|+.+++..|||+|
T Consensus 285 ---l~~aGad~v~vgig~gsictt~~~~~~~---~p--~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v 356 (479)
T PRK07807 285 ---LVEAGADIVKVGVGPGAMCTTRMMTGVG---RP--QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNV 356 (479)
T ss_pred ---HHHcCCCEEEECccCCcccccccccCCc---hh--HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCee
Confidence 336999999874222 1122221111 12 26666666542 13799999999999999999999999999
Q ss_pred EEchHHhhCCch
Q 017148 234 MVGRAAYQNPWY 245 (376)
Q Consensus 234 miGRa~l~~P~l 245 (376)
|+|+.|.....-
T Consensus 357 ~~g~~~ag~~Es 368 (479)
T PRK07807 357 MIGSWFAGTYES 368 (479)
T ss_pred eccHhhccCccC
Confidence 999999977653
No 130
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.23 E-value=1.6e-05 Score=77.31 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=47.2
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
++.++|+|.|++..- +|.+- . -.+.++-+++.+|++.||+ |.+-|.++++..+..|||++=+|
T Consensus 258 ll~~aGvdvviLDSS----qGnS~------~--qiemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 258 LLVQAGVDVVILDSS----QGNSI------Y--QLEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HhhhcCCcEEEEecC----CCcch------h--HHHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCceeEec
Confidence 455799999998642 23221 1 1567777788899998876 78889999999999999986554
No 131
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.23 E-value=4.7e-05 Score=71.83 Aligned_cols=165 Identities=15% Similarity=0.186 Sum_probs=96.1
Q ss_pred CEEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHhcccCcc
Q 017148 66 PIVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 66 p~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~~~~~~p 136 (376)
.++.=+.. .+.+.+.+.++.+.+.|+|.|||.+ |...-.-.| .+--+|. -+.+.+.++++++|+..++|
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIELGI--PYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 35555543 3678899999999999999999954 432111000 0011111 24678889999999877888
Q ss_pred EEEEecCCCCCC---ccHHHHHHHHHHHhhcCCccEEEEcc--------------------------Ccc----------
Q 017148 137 VSVKCRIGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHS--------------------------RKA---------- 177 (376)
Q Consensus 137 v~vKiR~g~~~~---~~~~~~~~~i~~~~e~~Gvd~I~vh~--------------------------r~~---------- 177 (376)
+.+= ++-+. -.+++.+ .. +.++|+|.+++|. -|.
T Consensus 94 ~vlm---~Y~N~i~~~G~e~F~---~~-~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 94 IVIF---TYYNPVLHYGINKFI---KK-ISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred EEEE---ecccHHHHhCHHHHH---HH-HHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 6431 11110 0122221 11 2245555555542 110
Q ss_pred --------ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 178 --------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 178 --------~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
...|.++.. ..++.--.+.+..+++ ..++||..-+||++++++.++.+.|||+|.+|++++.
T Consensus 167 a~gFIY~vS~~GvTG~~-~~~~~~~~~~i~~ir~-~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 167 APGCIYLVSTTGVTGLK-TELDKKLKKLIETIKK-MTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred CCCcEEEEcCCCCCCCC-ccccHHHHHHHHHHHH-hcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 011332221 1111111234455544 5699999999999999999999999999999999975
No 132
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.22 E-value=7.3e-05 Score=67.77 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 193 ~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.+.+.+.++++.. ++|++.-|||+|+++++++++.|||+|.+|
T Consensus 163 v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 163 VNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3467788887765 899999999999999999998899999987
No 133
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.20 E-value=0.00021 Score=64.78 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=106.2
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEec
Q 017148 18 DWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLN 97 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN 97 (376)
..+-.....++...+ .|+-+-|.-+.-....+.+.+..+.+..+ +..+++-+.-.++..+ .++.+.++|+|.|-+|
T Consensus 8 ~~~~~~a~~~~~~l~-~~v~~iev~~~l~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 8 LLDIEEALELAEKVA-DYVDIIEIGTPLIKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEY--EAEQAFAAGADIVTVL 83 (206)
T ss_pred CCCHHHHHHHHHHcc-cCeeEEEeCCHHHHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHH--HHHHHHHcCCCEEEEe
Confidence 334444444555553 45555555321111111122223322222 3456666533355543 4566788999999998
Q ss_pred CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe-cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc
Q 017148 98 CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 98 ~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
+-+|. ..+.++++.+++ .+.++.+-+ .. . +..++.. .+ .+.|+|++.++.+.
T Consensus 84 ~~~~~-----------------~~~~~~i~~~~~-~g~~~~~~~~~~--~--t~~~~~~----~~-~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 84 GVADD-----------------ATIKGAVKAAKK-HGKEVQVDLINV--K--DKVKRAK----EL-KELGADYIGVHTGL 136 (206)
T ss_pred ccCCH-----------------HHHHHHHHHHHH-cCCEEEEEecCC--C--ChHHHHH----HH-HHcCCCEEEEcCCc
Confidence 64431 234556666665 477777643 22 1 1122221 12 35699999997543
Q ss_pred cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 177 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..+. ..+..++.+.++++..+.++|...||| +.+.+.++++.|||+|.+||+++..+.
T Consensus 137 ~~~~---------~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 137 DEQA---------KGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITKAAD 194 (206)
T ss_pred Cccc---------CCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcCCCC
Confidence 2111 111225566676665555667679999 899999999999999999999887655
No 134
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.20 E-value=3.1e-05 Score=78.96 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=84.8
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
+-++.+.++|.|.|-|-... | +++.+.++++.+++.. ++||.+ | ...+.+...
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~-----------g-----~~~~~~~~i~~i~~~~~~~~vi~----g--~~~t~~~~~---- 281 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAH-----------G-----HQVKMISAIKAVRALDLGVPIVA----G--NVVSAEGVR---- 281 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCC-----------C-----CcHHHHHHHHHHHHHCCCCeEEE----e--ccCCHHHHH----
Confidence 44445556788988775321 1 4578899999999865 788888 2 122333322
Q ss_pred HHhhcCCccEEEEccCcc---ccCCCCCCCCCCCCcccHHHHHHH---HhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017148 160 KVSSLSPTRHFIIHSRKA---LLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~---~~~g~~~~~~~~~~~~~~~~v~~~---~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
.+.++|+|.|.|-++.. ..++..+. -.++ ...+.++ .++. ++|||+.|||.++.|+.++|..|||+|
T Consensus 282 -~l~~~G~d~i~vg~g~Gs~~ttr~~~~~---g~~~--~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~v 354 (475)
T TIGR01303 282 -DLLEAGANIIKVGVGPGAMCTTRMMTGV---GRPQ--FSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNV 354 (475)
T ss_pred -HHHHhCCCEEEECCcCCccccCccccCC---CCch--HHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 23469999999865421 11221111 1111 2222222 3344 899999999999999999999999999
Q ss_pred EEchHHhhCC
Q 017148 234 MVGRAAYQNP 243 (376)
Q Consensus 234 miGRa~l~~P 243 (376)
|+|+.+-+.-
T Consensus 355 m~g~~~ag~~ 364 (475)
T TIGR01303 355 MVGSWFAGTY 364 (475)
T ss_pred eechhhcccc
Confidence 9999887553
No 135
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.18 E-value=0.00017 Score=67.43 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=121.7
Q ss_pred hHHHHHHH-HHhCCCcEEEecceeecccccc-cchhhhhh-c-----cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC
Q 017148 21 DNHYRTLA-RLISKHAWLYTEMLAAETIIYQ-QGNLDRFL-A-----FSPEQHPIVLQIGGSNLDNLAKATELANAYNYD 92 (376)
Q Consensus 21 d~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~-~~~~~~~~-~-----~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d 92 (376)
+...+.+. -+.||++-++.|-....+.... .+.+...+ . ...-.-|+++|+.-+++. .+...+..+|+|
T Consensus 28 e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~---aal~iA~a~ga~ 104 (257)
T TIGR00259 28 DKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAV---AALAIAMAVGAK 104 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCH---HHHHHHHHhCCC
Confidence 44444442 4567899998887776655321 11111111 1 123356899999988764 344556678999
Q ss_pred EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE
Q 017148 93 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 170 (376)
Q Consensus 93 ~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I 170 (376)
+|-+|.-|-.. + +++ | -+..+...+.+.-+.+...+.+ .|-+|...-..+ .++++.++. .....++|+|
T Consensus 105 FIRv~~~~g~~-~--~d~-G-~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~-~~~~e~a~~---~~~~~~aDav 175 (257)
T TIGR00259 105 FIRVNVLTGVY-A--SDQ-G-IIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGN-RDLESIALD---TVERGLADAV 175 (257)
T ss_pred EEEEccEeeeE-e--ccc-c-cccccHHHHHHHHHHcCCCcEEEeceeecccCcCCC-CCHHHHHHH---HHHhcCCCEE
Confidence 99998654432 1 232 3 4455666666666665532221 233444331112 346665432 2234569999
Q ss_pred EEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 171 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 171 ~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+|+|... |. +.+|+.+.++++..+++||+.+||| +++.+.++++. ||||.+|+++=.+.
T Consensus 176 ivtG~~T---G~---------~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~G 234 (257)
T TIGR00259 176 ILSGKTT---GT---------EVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKDG 234 (257)
T ss_pred EECcCCC---CC---------CCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccCC
Confidence 9998652 21 1238888887765668999999999 89999999986 99999999976433
No 136
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.18 E-value=3.4e-05 Score=71.92 Aligned_cols=140 Identities=20% Similarity=0.243 Sum_probs=90.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC----
Q 017148 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---- 143 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---- 143 (376)
-+|+.|.-. .+ +.++.+-++|+|-|-| |+...++|+++.++ .+.-+. +-+++-.+-
T Consensus 75 ~v~vGGGIr-s~-e~~~~~l~~Ga~rvvi---------------gT~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~ 134 (241)
T PRK14114 75 HIQIGGGIR-SL-DYAEKLRKLGYRRQIV---------------SSKVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVA 134 (241)
T ss_pred cEEEecCCC-CH-HHHHHHHHCCCCEEEE---------------CchhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEe
Confidence 468876421 11 2344455678887654 44455789998888 443222 233333332
Q ss_pred --CCCCCc--cHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017148 144 --GVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 144 --g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
||.+.. +..+++ +.+++.|+..|.+.. |..+.+|. +++.+.++.+. +++|||++|||.
T Consensus 135 ~~gw~~~~~~~~~e~~----~~~~~~g~~~ii~tdI~rdGt~~G~-----------d~el~~~l~~~-~~~pviasGGv~ 198 (241)
T PRK14114 135 FKGWLAEEEIDPVSLL----KRLKEYGLEEIVHTEIEKDGTLQEH-----------DFSLTRKIAIE-AEVKVFAAGGIS 198 (241)
T ss_pred eCCCeecCCCCHHHHH----HHHHhcCCCEEEEEeechhhcCCCc-----------CHHHHHHHHHH-CCCCEEEECCCC
Confidence 454422 233433 334679999998863 33344442 27788888776 599999999999
Q ss_pred CHHHHHHHHHc-----C-cCeeEEchHHhhCC
Q 017148 218 TVDEVNAALRK-----G-AHHVMVGRAAYQNP 243 (376)
Q Consensus 218 s~~da~~~l~~-----G-ad~VmiGRa~l~~P 243 (376)
|.+|+.++.+. | +++|.+|++++..-
T Consensus 199 s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~ 230 (241)
T PRK14114 199 SENSLKTAQRVHRETNGLLKGVIVGRAFLEGI 230 (241)
T ss_pred CHHHHHHHHhcccccCCcEEEEEEehHHHCCC
Confidence 99999998874 5 99999999987553
No 137
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.17 E-value=5.7e-05 Score=70.51 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccccc----------CCHHHHHHHHHHHhcccCccEEE--Ee
Q 017148 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM----------LDPKFVGEAMSVIAANTNVPVSV--KC 141 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~----------~~~~~~~eiv~~v~~~~~~pv~v--Ki 141 (376)
.+.+.+.+.++.++++|+|.|||++ |.....-. |-... -+.+...++++.+++.+++|+.+ +.
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~D---G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~ 85 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVAD---GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYY 85 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 3668899999999999999999996 54322211 21111 13457889999999877788654 43
Q ss_pred cC----CCCCC----------------ccHHHHHHHHHHHhhcCCccEEE-EccCcc--------c-c---------CCC
Q 017148 142 RI----GVDDH----------------DSYNQLCDFIYKVSSLSPTRHFI-IHSRKA--------L-L---------NGI 182 (376)
Q Consensus 142 R~----g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~--------~-~---------~g~ 182 (376)
.+ |.+.. ..+++..+++ +.+.+.|++.+. +..-|. . . .|.
T Consensus 86 n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~-~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~ 164 (242)
T cd04724 86 NPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFR-EAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGV 164 (242)
T ss_pred CHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHH-HHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCC
Confidence 32 10000 0122221111 122234443333 111110 0 0 011
Q ss_pred CCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 183 SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 183 ~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
.+.+. ...+...+.+.++++. .++||+.-|||++.+++.++.+. ||+|.+|++++
T Consensus 165 tG~~~-~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 165 TGART-ELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred CCCcc-CCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 11110 0112224566666654 58999999999999999999988 99999999875
No 138
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.15 E-value=2e-05 Score=72.91 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=63.2
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.+++..-.....|. +.+++.+.++.+. +++||++.|||.+.+|++++++.|||.|.+|++
T Consensus 36 a~~~~~~g~~~i~v~dld~~~~g~---------~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 36 AKAWEDQGAKWLHLVDLDGAKAGK---------PVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred HHHHHHcCCCEEEEEeCCccccCC---------cccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECch
Confidence 344667999999998754332221 1237778888776 489999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017148 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.+|.++.
T Consensus 106 ~l~~~~~l~ 114 (233)
T PRK00748 106 AVKNPELVK 114 (233)
T ss_pred HHhCHHHHH
Confidence 999998753
No 139
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.13 E-value=9.8e-05 Score=66.93 Aligned_cols=152 Identities=15% Similarity=0.246 Sum_probs=90.1
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEec-CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccE--EEEecCCC
Q 017148 69 LQIGGSNLDNLAKATELANAYNYDEINLN-CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV--SVKCRIGV 145 (376)
Q Consensus 69 vQL~g~~~~~~~~aa~~~~~~G~d~IeiN-~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv--~vKiR~g~ 145 (376)
+.|...|++.+.+.++.+.++|+|.|++- +.+|.-. +...-.++++++++.++.|+ -++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~-------------~~~~~~~~v~~i~~~~~~~v~v~lm~~--- 66 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVP-------------NLTFGPPVLEALRKYTDLPIDVHLMVE--- 66 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-------------CcccCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 45667788999999999999999999996 3334321 11123455666665555564 34433
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCcc--------cc--CCCC------C-------------CC----------
Q 017148 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--------LL--NGIS------P-------------AE---------- 186 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--------~~--~g~~------~-------------~~---------- 186 (376)
+ ..+. +.. +.++|+|.|++|+... .. .|.. . .+
T Consensus 67 -~---~~~~---~~~-~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g 138 (210)
T TIGR01163 67 -N---PDRY---IED-FAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPG 138 (210)
T ss_pred -C---HHHH---HHH-HHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCC
Confidence 1 1122 222 2367888888886520 00 0000 0 00
Q ss_pred --CCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 187 --NRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 187 --~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.....+..++.+.++++.. +++||.+.|||+ ++.+.+++++|+|+|.+||+++..+..
T Consensus 139 ~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~~d~ 202 (210)
T TIGR01163 139 FGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGADDY 202 (210)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence 0000111122333333221 247999999995 799999999999999999999987764
No 140
>PLN02591 tryptophan synthase
Probab=98.12 E-value=0.00013 Score=68.37 Aligned_cols=162 Identities=18% Similarity=0.198 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHhcccCccEEEEecC---
Q 017148 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIAANTNVPVSVKCRI--- 143 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~~~~~~pv~vKiR~--- 143 (376)
.+.+.+.+.++.+.+.|+|.|||-+ |...-.-.| .+--+|. -+.+.+.++++.+|+..++|+.+=.-.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i 90 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGV--PYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPI 90 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHH
Confidence 4678899999999999999999954 332111000 0011111 256788899999997777886432111
Q ss_pred ---CCCC----------------CccHHHHHHHHHHHhhcCCccEEEEc-cCcc------------------ccCCCCCC
Q 017148 144 ---GVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIH-SRKA------------------LLNGISPA 185 (376)
Q Consensus 144 ---g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~------------------~~~g~~~~ 185 (376)
|.+. .-.++|..++ ...+.+.|++.|.+- .-+. ...|.++.
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~-~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~ 169 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEAL-RAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGA 169 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHH-HHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCC
Confidence 1110 0012232222 233445666665542 1110 00122222
Q ss_pred CCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
. ...+....+.+..+++ .+++||+..-||.+++++.++++.|||||.+|++++
T Consensus 170 ~-~~~~~~~~~~i~~vk~-~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 170 R-ASVSGRVESLLQELKE-VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred C-cCCchhHHHHHHHHHh-cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 1 1112211334555555 569999999999999999999999999999999987
No 141
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.08 E-value=0.00012 Score=71.99 Aligned_cols=138 Identities=15% Similarity=0.106 Sum_probs=99.2
Q ss_pred CCEEEEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEE
Q 017148 65 HPIVLQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVK 140 (376)
Q Consensus 65 ~p~~vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vK 140 (376)
.|+-..+... +++++.+.++.+.+.||+.+.|+.|..... .+++++..++++++|+.+ +.++.+.
T Consensus 127 v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-----------~~~~~~d~~~v~~ir~~~g~~~~l~vD 195 (357)
T cd03316 127 VRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG-----------GEDLREDLARVRAVREAVGPDVDLMVD 195 (357)
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-----------hHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 3444444444 589999999999999999999987754211 167889999999999987 4677777
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017148 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
..-+|+ .++.++++. .+++.|+++|.-. +++..++..+.+++. .++||++...+.+++
T Consensus 196 aN~~~~----~~~a~~~~~-~l~~~~i~~iEqP----------------~~~~~~~~~~~l~~~-~~ipi~~dE~~~~~~ 253 (357)
T cd03316 196 ANGRWD----LAEAIRLAR-ALEEYDLFWFEEP----------------VPPDDLEGLARLRQA-TSVPIAAGENLYTRW 253 (357)
T ss_pred CCCCCC----HHHHHHHHH-HhCccCCCeEcCC----------------CCccCHHHHHHHHHh-CCCCEEeccccccHH
Confidence 665664 345555443 4466787775410 112235666677665 489999999999999
Q ss_pred HHHHHHH-cCcCeeEE
Q 017148 221 EVNAALR-KGAHHVMV 235 (376)
Q Consensus 221 da~~~l~-~Gad~Vmi 235 (376)
++.++++ ..+|.|++
T Consensus 254 ~~~~~i~~~~~d~v~~ 269 (357)
T cd03316 254 EFRDLLEAGAVDIIQP 269 (357)
T ss_pred HHHHHHHhCCCCEEec
Confidence 9999998 66898876
No 142
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.07 E-value=0.00014 Score=67.32 Aligned_cols=136 Identities=14% Similarity=0.152 Sum_probs=88.7
Q ss_pred EEecCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHH-hcccCccEEEEec---
Q 017148 69 LQIGGS--NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI-AANTNVPVSVKCR--- 142 (376)
Q Consensus 69 vQL~g~--~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v-~~~~~~pv~vKiR--- 142 (376)
+|+.|. +.+ -++.+-+.|++-|-| |+...++|+++.++.+.. .+.+ -+++-.|
T Consensus 76 v~vGGGIrs~e----~~~~~l~~Ga~kvvi---------------gt~a~~~p~~~~~~~~~~g~~~i--vvslD~~~~~ 134 (232)
T PRK13586 76 IQVGGGIRDIE----KAKRLLSLDVNALVF---------------STIVFTNFNLFHDIVREIGSNRV--LVSIDYDNTK 134 (232)
T ss_pred EEEeCCcCCHH----HHHHHHHCCCCEEEE---------------CchhhCCHHHHHHHHHHhCCCCE--EEEEEcCCCC
Confidence 788764 333 234455578887744 455567899999998887 3332 2222221
Q ss_pred ----CCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccC--ccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017148 143 ----IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 143 ----~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r--~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
-||.+. .+..+++ +.+++.|+..|.++.= ....+|. +++.+..+.+. ..|+|++||
T Consensus 135 ~v~~~gw~~~~~~~~e~~----~~l~~~g~~~ii~tdI~~dGt~~G~-----------d~el~~~~~~~--~~~viasGG 197 (232)
T PRK13586 135 RVLIRGWKEKSMEVIDGI----KKVNELELLGIIFTYISNEGTTKGI-----------DYNVKDYARLI--RGLKEYAGG 197 (232)
T ss_pred EEEccCCeeCCCCHHHHH----HHHHhcCCCEEEEecccccccCcCc-----------CHHHHHHHHhC--CCCEEEECC
Confidence 146442 1233433 3456899998888743 3333442 26666666543 345999999
Q ss_pred CCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 216 INTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 216 I~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|.+.+|+.++.+.|+|+|.+|++++..
T Consensus 198 v~s~~Dl~~l~~~G~~gvivg~Aly~g 224 (232)
T PRK13586 198 VSSDADLEYLKNVGFDYIIVGMAFYLG 224 (232)
T ss_pred CCCHHHHHHHHHCCCCEEEEehhhhcC
Confidence 999999999988999999999999743
No 143
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.06 E-value=0.00016 Score=66.48 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=84.0
Q ss_pred HHHHHHHHHCCCCEEEe--cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHH
Q 017148 80 AKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 80 ~~aa~~~~~~G~d~Iei--N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
...++.+.+.|+|.||+ |.+++ ...+.+.+.+-+.++++.+ .|+.+|+-+-..+. +-+++ ..
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~~~-------------~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~~e~i-~~ 140 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIGAL-------------KSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-TDEEK-VK 140 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHHHh-------------cCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-CHHHH-HH
Confidence 34555666789999996 33333 2335677777777777755 36788874422221 12233 23
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.+++.++|+|+|..+.+.. ..| ...+.+..+.+.. .+++|.++|||+|.+++.++++.||+-+...
T Consensus 141 a~~~~~~agadfIKTsTG~~-~~g-----------at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 141 ACEIAKEAGADFVKTSTGFS-TGG-----------ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHHHHHhCCCEEEcCCCCC-CCC-----------CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 45566789999887665431 122 1244444444443 3699999999999999999999999987766
Q ss_pred hH
Q 017148 237 RA 238 (376)
Q Consensus 237 Ra 238 (376)
++
T Consensus 209 ~~ 210 (221)
T PRK00507 209 AG 210 (221)
T ss_pred cH
Confidence 55
No 144
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.00022 Score=63.62 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=42.2
Q ss_pred cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 194 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 194 ~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++.+++++.+ .+++||+-|.+.||+++.++++.||++|.+|.++ ..|.
T Consensus 169 Df~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAI-TRp~ 216 (229)
T COG3010 169 DFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAI-TRPE 216 (229)
T ss_pred cHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECccc-CCHH
Confidence 4888888876 3899999999999999999999999999999865 5554
No 145
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.06 E-value=4.2e-05 Score=68.64 Aligned_cols=153 Identities=17% Similarity=0.143 Sum_probs=98.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEe-cCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEE
Q 017148 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINL-NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVK 140 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~Iei-N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vK 140 (376)
..-|+.|. +-+|+.|..+. ++|+|.||| |+.|-+.+ |. .-..+.+.++.++.|+-. +++++|-
T Consensus 60 s~lPICVS--aVep~~f~~aV----~AGAdliEIGNfDsFY~q----Gr-----~f~a~eVL~Lt~~tR~LLP~~~LsVT 124 (242)
T PF04481_consen 60 SNLPICVS--AVEPELFVAAV----KAGADLIEIGNFDSFYAQ----GR-----RFSAEEVLALTRETRSLLPDITLSVT 124 (242)
T ss_pred CCCCeEee--cCCHHHHHHHH----HhCCCEEEecchHHHHhc----CC-----eecHHHHHHHHHHHHHhCCCCceEEe
Confidence 46677765 67899998765 489999999 77776643 11 124678889999988865 6677775
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccC---CCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017148 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN---GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~---g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
+.=- -.+++=++ ++..+++.|+|.|.-.|++.... |..+.-....+ .+...+++.+. +++||+...|+.
T Consensus 125 VPHi----L~ld~Qv~-LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaap--TLAaay~ISr~-v~iPVlcASGlS 196 (242)
T PF04481_consen 125 VPHI----LPLDQQVQ-LAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAP--TLAAAYAISRA-VSIPVLCASGLS 196 (242)
T ss_pred cCcc----ccHHHHHH-HHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhH--HHHHHHHHHhc-cCCceEeccCcc
Confidence 4321 12222232 34556789999999888874211 11110000000 13444566665 599999999996
Q ss_pred CHHHHHHHHHcCcCeeEEchHH
Q 017148 218 TVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+. .+--++..||.||.+|.+.
T Consensus 197 ~v-T~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 197 AV-TAPMAIAAGASGVGVGSAV 217 (242)
T ss_pred hh-hHHHHHHcCCcccchhHHh
Confidence 55 4455667899999999985
No 146
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.05 E-value=0.00044 Score=64.06 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC-CCCC--CccH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-GVDD--HDSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~-g~~~--~~~~ 151 (376)
+...+...++.+.+.|+|+|++..-.. ...+ ....+.+.++.+..+ ..++|+.+-... |..- ..+.
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~------~~~~----~~~~~~i~~v~~~~~-~~g~~~iie~~~~g~~~~~~~~~ 142 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVG------SEEE----REMLEELARVAAEAH-KYGLPLIAWMYPRGPAVKNEKDP 142 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecC------CchH----HHHHHHHHHHHHHHH-HcCCCEEEEEeccCCcccCccCH
Confidence 345555567778889999995532100 0000 011123333333322 347788774433 1100 0111
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC--CCHHH----HHHH
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI--NTVDE----VNAA 225 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI--~s~~d----a~~~ 225 (376)
+.+....+++.+.|+|+|-+.. + + ..+.++++++.. .+||++.||| .|.++ +.++
T Consensus 143 -~~i~~~~~~a~~~GaD~Ik~~~-~----~------------~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~~ 203 (235)
T cd00958 143 -DLIAYAARIGAELGADIVKTKY-T----G------------DAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDA 203 (235)
T ss_pred -HHHHHHHHHHHHHCCCEEEecC-C----C------------CHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHHH
Confidence 2222223445678999999842 1 0 156677777654 7999999987 67766 6677
Q ss_pred HHcCcCeeEEchHHhhCCc
Q 017148 226 LRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 226 l~~Gad~VmiGRa~l~~P~ 244 (376)
++.||++|.+||.++..|.
T Consensus 204 ~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 204 MEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred HHcCCcEEEechhhhcCCC
Confidence 8899999999999998876
No 147
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.04 E-value=2.1e-05 Score=73.14 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=58.9
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.+.|++.+++---+....+. ...++.+.++.+.. ++|++.+|||+|.++++.+++.|||.|++|+.++.
T Consensus 41 ~~~~G~~~l~i~dl~~~~~~~---------~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 41 WVDAGAETLHLVDLDGAFEGE---------RKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE 110 (241)
T ss_pred HHHcCCCEEEEEechhhhcCC---------cccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 446899997553222211111 12367888888875 89999999999999999999999999999999999
Q ss_pred CCchhh
Q 017148 242 NPWYTL 247 (376)
Q Consensus 242 ~P~lf~ 247 (376)
+|+++.
T Consensus 111 ~~~~~~ 116 (241)
T PRK13585 111 NPEIVR 116 (241)
T ss_pred ChHHHH
Confidence 999863
No 148
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.04 E-value=2.5e-05 Score=72.30 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=63.0
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.|+++.......+. ..+++.+.++.+.. ++||++.|||.+.++++++++.||+.|++|++
T Consensus 36 a~~~~~~g~~~i~i~dl~~~~~~~---------~~n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~ 105 (232)
T TIGR03572 36 ARIYNAKGADELIVLDIDASKRGR---------EPLFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKVSINTA 105 (232)
T ss_pred HHHHHHcCCCEEEEEeCCCcccCC---------CCCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence 344568999999998665421111 22477788887764 89999999999999999998899999999999
Q ss_pred HhhCCchhh
Q 017148 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 106 ~l~~~~~~~ 114 (232)
T TIGR03572 106 ALENPDLIE 114 (232)
T ss_pred HhcCHHHHH
Confidence 999999753
No 149
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.02 E-value=7.3e-05 Score=68.81 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=41.8
Q ss_pred cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 194 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 194 ~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+++.+.++.+. .++|||+.|||.|.+|+.++.+.|||+|.+|++++.
T Consensus 172 d~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 172 NLELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 37888888876 489999999999999999988899999999999864
No 150
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=98.02 E-value=0.0016 Score=59.16 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=114.2
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecC-CCHHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGG-SNLDNL 79 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g-~~~~~~ 79 (376)
|++.++..|+++- -+.+++... ....++.| ..++..-+=.++......+.+..+ +.+.+-.+-.+=.| .+.++-
T Consensus 10 i~g~~f~SRLllG-Tgky~s~~~~~~av~asg-~~ivTvAlRR~~~~~~~~~~~l~~--l~~~~~~~LPNTaGc~taeEA 85 (262)
T COG2022 10 IAGKTFDSRLLLG-TGKYPSPAVLAEAVRASG-SEIVTVALRRVNATRPGGDGILDL--LIPLGVTLLPNTAGCRTAEEA 85 (262)
T ss_pred ecCeeeeeeEEEe-cCCCCCHHHHHHHHHhcC-CceEEEEEEeecccCCCcchHHHH--hhhcCcEeCCCccccCCHHHH
Confidence 6788999999885 344665555 44456654 555433333332211112222222 22233333333333 468889
Q ss_pred HHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHH
Q 017148 80 AKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
+..|+++.++ +-|+|-|-. ..... .|+-|+-...+-.+.+.+. ++-|..- .. + +. .+
T Consensus 86 v~tArlARE~~~t~wiKlEV-------i~d~~---tLlPD~~etl~Aae~Lv~e-GF~VlPY-----~~-d---D~--v~ 143 (262)
T COG2022 86 VRTARLAREALGTNWIKLEV-------IGDEK---TLLPDPIETLKAAEQLVKE-GFVVLPY-----TT-D---DP--VL 143 (262)
T ss_pred HHHHHHHHHHccCCeEEEEE-------ecCCc---ccCCChHHHHHHHHHHHhC-CCEEeec-----cC-C---CH--HH
Confidence 9999999886 457776632 22111 2455554333333333221 3333321 11 1 11 13
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.||.+|---+- ..-+|. ...+-..+.-++++. ++|||..-||-++.|+..+++.|||+|++-++
T Consensus 144 arrLee~GcaavMPl~a-PIGSg~--------G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 144 ARRLEEAGCAAVMPLGA-PIGSGL--------GLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred HHHHHhcCceEeccccc-cccCCc--------CcCCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 56678999987653221 111111 122244555666666 99999999999999999999999999999887
Q ss_pred Hh
Q 017148 239 AY 240 (376)
Q Consensus 239 ~l 240 (376)
.-
T Consensus 214 iA 215 (262)
T COG2022 214 IA 215 (262)
T ss_pred hh
Confidence 64
No 151
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.01 E-value=0.00013 Score=66.03 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=54.3
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+++.|+|++.++.-...... ...++..++.+.++.+.. ++||++.||| +++++.++++.|+|+|++|+++..
T Consensus 111 a~~~Gadyi~~g~v~~t~~k------~~~~~~g~~~l~~~~~~~-~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 111 AEKNGADYVVYGHVFPTDCK------KGVPARGLEELSDIARAL-SIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHcCCCEEEECCCCCCCCC------CCCCCCCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 34689999976532211100 012233477788877654 8999999999 999999999999999999999985
Q ss_pred CCc
Q 017148 242 NPW 244 (376)
Q Consensus 242 ~P~ 244 (376)
.+.
T Consensus 183 ~~~ 185 (201)
T PRK07695 183 SAN 185 (201)
T ss_pred CCC
Confidence 433
No 152
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.00 E-value=0.0004 Score=65.41 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=88.8
Q ss_pred CCCEEEEecCCC-----H--HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---c
Q 017148 64 QHPIVLQIGGSN-----L--DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---T 133 (376)
Q Consensus 64 ~~p~~vQL~g~~-----~--~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~ 133 (376)
+.++++.+.+.. + ..+...++.+.+.|+|+|++-. + +|. ..+.+.+ +.++++++. .
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~-----~------~g~--~~~~~~~-~~~~~i~~~~~~~ 135 (258)
T TIGR01949 70 DVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHV-----N------VGS--DTEWEQI-RDLGMIAEICDDW 135 (258)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEE-----e------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence 455777774322 2 1344557778889999998843 1 121 0112333 445555443 4
Q ss_pred CccEEEEec-CCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017148 134 NVPVSVKCR-IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 134 ~~pv~vKiR-~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
++|+.|..- .|.... .+. +.+....+.+.+.|+|+|-+.. .+ ..+.+.++.+.. .+||+
T Consensus 136 g~~liv~~~~~Gvh~~~~~~-~~~~~~~~~a~~~GADyikt~~-----~~------------~~~~l~~~~~~~-~iPVv 196 (258)
T TIGR01949 136 GVPLLAMMYPRGPHIDDRDP-ELVAHAARLGAELGADIVKTPY-----TG------------DIDSFRDVVKGC-PAPVV 196 (258)
T ss_pred CCCEEEEEeccCcccccccH-HHHHHHHHHHHHHCCCEEeccC-----CC------------CHHHHHHHHHhC-CCcEE
Confidence 778777432 111000 112 2222223455679999999641 11 156677777654 79999
Q ss_pred EecCCC--CHHHHH----HHHHcCcCeeEEchHHhhCCch
Q 017148 212 LNGGIN--TVDEVN----AALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 212 ~nGgI~--s~~da~----~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+.|||. |.+++. ++++.||+++.+||+++..+..
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp 236 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDP 236 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCH
Confidence 999999 655554 4457999999999999987764
No 153
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.98 E-value=0.00023 Score=66.39 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=92.0
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccC----CHHHHHHHHHHH-hcccCccEEEEe
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML----DPKFVGEAMSVI-AANTNVPVSVKC 141 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~----~~~~~~eiv~~v-~~~~~~pv~vKi 141 (376)
+-+|+.|.-. . +.++.+-++|++.|-|+ +.+.+ +|+++.++.+.. .+.+-+-+.+|.
T Consensus 77 ~~v~vGGGIr-~--e~v~~~l~aGa~rVvIG---------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~ 138 (253)
T TIGR02129 77 GGLQVGGGIN-D--TNAQEWLDEGASHVIVT---------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRK 138 (253)
T ss_pred CCEEEeCCcC-H--HHHHHHHHcCCCEEEEC---------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEE
Confidence 5678877643 2 55666777899988774 22323 488899998887 444333333431
Q ss_pred ---------cCCCCCCc--cHH-HHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017148 142 ---------RIGVDDHD--SYN-QLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 142 ---------R~g~~~~~--~~~-~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
.-||.+.. +.. +++ . .+++. +..|.++. |..+..|. +++.+.++.+. ++
T Consensus 139 ~~~g~~~V~~~GW~~~t~~~~~~e~~---~-~~~~~-~~~il~TdI~rDGtl~G~-----------dlel~~~l~~~-~~ 201 (253)
T TIGR02129 139 TQDGRWIVAMNKWQTITDLELNAETL---E-ELSKY-CDEFLIHAADVEGLCKGI-----------DEELVSKLGEW-SP 201 (253)
T ss_pred cCCCcEEEEECCCcccCCCChHHHHH---H-HHHhh-CCEEEEeeecccCccccC-----------CHHHHHHHHhh-CC
Confidence 11565532 232 333 2 33456 88888874 34444442 37788888776 59
Q ss_pred CeEEEecCCCCHHHHHHHHH--cCcCeeEEchHHhh
Q 017148 208 LTFTLNGGINTVDEVNAALR--KGAHHVMVGRAAYQ 241 (376)
Q Consensus 208 ipVi~nGgI~s~~da~~~l~--~Gad~VmiGRa~l~ 241 (376)
+|||++|||.+.+|+.++.+ .|..++.+|++++.
T Consensus 202 ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 202 IPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred CCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 99999999999999998855 36778999999864
No 154
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.98 E-value=0.00025 Score=64.18 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=87.9
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 145 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~g-cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~ 145 (376)
+.+.|..-|+..+.+.++.+.++|+|.|.+... .+... +..+-.++++.+++.++.|+.+.+-.
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~-------------~~~~~~~~~~~i~~~~~~~~~v~l~~-- 66 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVP-------------NLTFGPPVVKALRKHTDLPLDVHLMV-- 66 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC-------------ccccCHHHHHHHHhhCCCcEEEEeee--
Confidence 456778889999999999999999999998421 11110 00111244555554433444333322
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCcc--------ccC--CC---------CC----------------------
Q 017148 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--------LLN--GI---------SP---------------------- 184 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--------~~~--g~---------~~---------------------- 184 (376)
.+ ..+.+ ..+ .++|+|.++||+... ... +. +.
T Consensus 67 ~d---~~~~~---~~~-~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g 139 (211)
T cd00429 67 EN---PERYI---EAF-AKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPG 139 (211)
T ss_pred CC---HHHHH---HHH-HHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCC
Confidence 11 11111 112 257777777775420 000 00 00
Q ss_pred CCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 185 AENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
......++...+.+.++++.. +++||++.|||.. +++.++++.|+|+|.+||++...+..
T Consensus 140 ~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~~ 203 (211)
T cd00429 140 FGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDDY 203 (211)
T ss_pred CCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCCH
Confidence 000000111122333443322 1489999999985 99999999999999999999987764
No 155
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.97 E-value=0.00029 Score=65.35 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=88.2
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC-
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV- 145 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~- 145 (376)
+-+|+.|.- ..+. -++.+.++|++-|-|| +...++ +++.++++...+. .+-+++-++-|.
T Consensus 79 ~~v~vgGGi-r~~e-dv~~~l~~Ga~~viig---------------t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~ 139 (233)
T cd04723 79 LGLWVDGGI-RSLE-NAQEWLKRGASRVIVG---------------TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQL 139 (233)
T ss_pred CCEEEecCc-CCHH-HHHHHHHcCCCeEEEc---------------ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCee
Confidence 347777642 1222 3333445787776553 334456 8888888887541 233444433331
Q ss_pred ---CCCccHHHHHHHHHHHhhcCCccEEEEccCcc--ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017148 146 ---DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 146 ---~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
....+..++++. +++. ++.+++..-.. ...| .+++.+.++.+. +++||++.|||.|.+
T Consensus 140 ~~~~~~~~~~~~~~~----~~~~-~~~li~~di~~~G~~~g-----------~~~~~~~~i~~~-~~ipvi~~GGi~s~e 202 (233)
T cd04723 140 LKPTDFIGPEELLRR----LAKW-PEELIVLDIDRVGSGQG-----------PDLELLERLAAR-ADIPVIAAGGVRSVE 202 (233)
T ss_pred ccccCcCCHHHHHHH----HHHh-CCeEEEEEcCccccCCC-----------cCHHHHHHHHHh-cCCCEEEeCCCCCHH
Confidence 112234454432 3456 77777753322 1112 236777888776 489999999999999
Q ss_pred HHHHHHHcCcCeeEEchHHhhC
Q 017148 221 EVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 221 da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|++++++.|+++|.+|++++..
T Consensus 203 di~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 203 DLELLKKLGASGALVASALHDG 224 (233)
T ss_pred HHHHHHHcCCCEEEEehHHHcC
Confidence 9999999999999999999866
No 156
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.95 E-value=0.00043 Score=63.46 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=47.0
Q ss_pred ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchh
Q 017148 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 193 ~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
.+.+.+.++++...++|++.-|||+|.++++++++.|||+|.+|+.+..||.++
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~ 218 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKA 218 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHH
Confidence 346677777765448999999999999999999999999999999999999875
No 157
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.94 E-value=0.00044 Score=63.59 Aligned_cols=151 Identities=17% Similarity=0.286 Sum_probs=95.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecC
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI 143 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~ 143 (376)
+.+.|...|...+.+-.+.++++|+|.+ |+-=|+-+++.+ || -++++++|+. ++.|+.|-+=.
T Consensus 2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~t----fg----------~~~i~~i~~~~~~~~~dvHLMv 67 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLT----FG----------APICKALRDYGITAPIDVHLMV 67 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCccc----cC----------HHHHHHHHHhCCCCCEEEEecc
Confidence 3456777888899999999999998875 554455444322 45 3567777776 57787775443
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----------cC---------------------------------
Q 017148 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LN--------------------------------- 180 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~--------------------------------- 180 (376)
++ .+..++ . +.++|+|.|++|.-... ..
T Consensus 68 --~~---p~~~i~---~-~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~ 138 (220)
T PRK08883 68 --KP---VDRIIP---D-FAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVN 138 (220)
T ss_pred --CC---HHHHHH---H-HHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEec
Confidence 32 222222 2 23589999999854210 00
Q ss_pred -CCCCCCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 181 -GISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 181 -g~~~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
|+++. ..-+..++.+.++++.. .++||.+-|||+ .+.+.++.+.|||++.+|++++..+.
T Consensus 139 PGfgGq---~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 139 PGFGGQ---SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD 203 (220)
T ss_pred CCCCCc---eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence 11110 00111133444444322 148999999997 99999999999999999999876554
No 158
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.94 E-value=0.00058 Score=64.29 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=97.4
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHh-cccCcc
Q 017148 67 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIA-ANTNVP 136 (376)
Q Consensus 67 ~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~-~~~~~p 136 (376)
++.=+.. .+.+.+.+.++.+.+.|+|.|||.+ |...-.-.| .+--+|. -+.+.+.++++++| +..++|
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGi--PfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGI--PFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIP 91 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 4444443 3678899999999999999999954 432111000 0011111 24567889999998 556778
Q ss_pred EEEEecC------CCCC----------------CccHHHHHHHHHHHhhcCCccEEE-EccCcc----------------
Q 017148 137 VSVKCRI------GVDD----------------HDSYNQLCDFIYKVSSLSPTRHFI-IHSRKA---------------- 177 (376)
Q Consensus 137 v~vKiR~------g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~---------------- 177 (376)
+.+=.-. |.+. .-.+++.-++ ...+.+.|++.|. +..-+.
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~-~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY 170 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEEL-RAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVY 170 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHH-HHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 6432211 1110 0112232222 2334556777666 333221
Q ss_pred --ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 178 --LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 178 --~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
...|.++.. ...+....+.+..+++ ..++||+..+||.+++++.++++. ||+|.+|++++
T Consensus 171 ~vs~~GvTG~~-~~~~~~~~~~i~~vk~-~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv 232 (258)
T PRK13111 171 YVSRAGVTGAR-SADAADLAELVARLKA-HTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALV 232 (258)
T ss_pred EEeCCCCCCcc-cCCCccHHHHHHHHHh-cCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHH
Confidence 011222221 1122222446666665 458999999999999999999974 99999999987
No 159
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.92 E-value=0.00028 Score=63.29 Aligned_cols=147 Identities=18% Similarity=0.275 Sum_probs=91.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc-----cccCC-C--CccccccCCHHHHHHHHH---------
Q 017148 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP-----KVAGH-G--CFGVSLMLDPKFVGEAMS--------- 127 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~-----~v~r~-g--~yG~~l~~~~~~~~eiv~--------- 127 (376)
.|++.=+.+.+++++.+.++.+.+.|++.|++....|.. .+.+. + .-|+...-+.+.+.+.++
T Consensus 4 ~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p 83 (190)
T cd00452 4 QPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSP 83 (190)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence 345555677888888888888888899999997654421 00000 0 003333333333333322
Q ss_pred --------HHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017148 128 --------VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 128 --------~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
..++ .+.++. +|.. +.+|..+ +.+.|+|+|-+..... ...+++.
T Consensus 84 ~~~~~~~~~~~~-~~~~~i----~gv~---t~~e~~~-----A~~~Gad~i~~~p~~~---------------~g~~~~~ 135 (190)
T cd00452 84 GLDPEVVKAANR-AGIPLL----PGVA---TPTEIMQ-----ALELGADIVKLFPAEA---------------VGPAYIK 135 (190)
T ss_pred CCCHHHHHHHHH-cCCcEE----CCcC---CHHHHHH-----HHHCCCCEEEEcCCcc---------------cCHHHHH
Confidence 2221 123332 2333 3444322 2358999998743211 1256677
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
.+...++++|+++.||| +++.+.+.++.|+|+|.+++.+.
T Consensus 136 ~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 136 ALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 77766668999999999 99999999999999999999987
No 160
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=97.87 E-value=0.00089 Score=63.19 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=94.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEe
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKi 141 (376)
.-|+...+...+++.+.+.++...+.||..+.++.| .+++.-.+++++||+.+ +.++.+..
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg-----------------~~~~~d~~~v~~vr~~~g~~~~l~vDa 136 (265)
T cd03315 74 RVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG-----------------RDPARDVAVVAALREAVGDDAELRVDA 136 (265)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC-----------------CCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 345555666667888988888888899999988653 12456678888888876 45666666
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017148 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
.-+|+ .++.++++ +.+++.|+++|.-- +++.+++..+++.+.. ++||.+.+.+.++++
T Consensus 137 n~~~~----~~~a~~~~-~~l~~~~i~~iEeP----------------~~~~d~~~~~~l~~~~-~ipia~dE~~~~~~~ 194 (265)
T cd03315 137 NRGWT----PKQAIRAL-RALEDLGLDYVEQP----------------LPADDLEGRAALARAT-DTPIMADESAFTPHD 194 (265)
T ss_pred CCCcC----HHHHHHHH-HHHHhcCCCEEECC----------------CCcccHHHHHHHHhhC-CCCEEECCCCCCHHH
Confidence 66665 33444443 34567889887521 1122366667777654 899999999999999
Q ss_pred HHHHHH-cCcCeeEE
Q 017148 222 VNAALR-KGAHHVMV 235 (376)
Q Consensus 222 a~~~l~-~Gad~Vmi 235 (376)
+.++++ ..+|.|++
T Consensus 195 ~~~~i~~~~~d~v~~ 209 (265)
T cd03315 195 AFRELALGAADAVNI 209 (265)
T ss_pred HHHHHHhCCCCEEEE
Confidence 999998 66999987
No 161
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.87 E-value=0.001 Score=61.58 Aligned_cols=144 Identities=13% Similarity=0.197 Sum_probs=90.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-CCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017148 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~g-cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
.+.++.+.|.-++|+++.+.+ .++|+|+|-+|.+ +.. +...+.++.+++. +.-+.+-+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~---~~~gad~v~vH~~q~~~-----------------d~~~~~~~~i~~~-g~~iGls~ 122 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF---AKAGASIFTFHIEQAST-----------------IHLHRLIQQIKSA-GMKAGVVL 122 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH---HHcCCCEEEEeeccccc-----------------hhHHHHHHHHHHC-CCeEEEEE
Confidence 455678899999999887655 5679999999976 121 1223455555432 33233322
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEE---EEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017148 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHF---IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I---~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
.. . ... +.+ ..+++..|+|+| .++.++..+ ...+...+.+.++++..+++||.+.||| +
T Consensus 123 ~~--~--t~~-~~~---~~~~~~~~~Dyi~~~~v~pg~~~~---------~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~ 184 (229)
T PLN02334 123 NP--G--TPV-EAV---EPVVEKGLVDMVLVMSVEPGFGGQ---------SFIPSMMDKVRALRKKYPELDIEVDGGV-G 184 (229)
T ss_pred CC--C--CCH-HHH---HHHHhccCCCEEEEEEEecCCCcc---------ccCHHHHHHHHHHHHhCCCCcEEEeCCC-C
Confidence 21 1 112 222 222222239999 455433211 1123335666777665567899999999 8
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 219 VDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+++.++++.|+|+|.+|+++...+..
T Consensus 185 ~e~i~~l~~aGad~vvvgsai~~~~d~ 211 (229)
T PLN02334 185 PSTIDKAAEAGANVIVAGSAVFGAPDY 211 (229)
T ss_pred HHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence 999999999999999999999877663
No 162
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.86 E-value=6e-05 Score=68.30 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=63.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++...+.|+|-++.---|+...|. ...++++.+..++. .||+..-|||.|.+|+.++|..|||=|.|.++
T Consensus 36 A~~Y~e~GADElvFlDItAs~~gr---------~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINsa 105 (256)
T COG0107 36 AKRYNEEGADELVFLDITASSEGR---------ETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINSA 105 (256)
T ss_pred HHHHHHcCCCeEEEEecccccccc---------hhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeChh
Confidence 556778999998864444322221 12378888888765 89999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017148 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.+..
T Consensus 106 Av~~p~lI~ 114 (256)
T COG0107 106 AVKDPELIT 114 (256)
T ss_pred HhcChHHHH
Confidence 999999864
No 163
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.86 E-value=0.00046 Score=63.83 Aligned_cols=131 Identities=22% Similarity=0.399 Sum_probs=81.2
Q ss_pred EEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC--
Q 017148 68 VLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI-- 143 (376)
Q Consensus 68 ~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~-- 143 (376)
-+|+.| .+.++.. .+.+.|++.+-+ |.+.. +|+++.++.+..-+ +-+++-.|-
T Consensus 75 pv~~gGGIrs~edv~----~l~~~G~~~viv---------------Gtaa~-~~~~l~~~~~~~g~---ivvslD~~~g~ 131 (228)
T PRK04128 75 KVQVGGGLRTYESIK----DAYEIGVENVII---------------GTKAF-DLEFLEKVTSEFEG---ITVSLDVKGGR 131 (228)
T ss_pred CEEEcCCCCCHHHHH----HHHHCCCCEEEE---------------Cchhc-CHHHHHHHHHHcCC---EEEEEEccCCe
Confidence 356655 3555443 334568888744 34444 78999988887632 333333332
Q ss_pred ----CCCCC--ccHHHHHHHHHHHhhcCCccEEEEcc--CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017148 144 ----GVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 144 ----g~~~~--~~~~~~~~~i~~~~e~~Gvd~I~vh~--r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
||.+. .+..++++.+ ++. +..|.+.. |....+| ++ ++.+..+++|||++||
T Consensus 132 v~~~gw~~~~~~~~~~~~~~~----~~~-~~~ii~t~i~~dGt~~G-------------~d---~l~~~~~~~pviasGG 190 (228)
T PRK04128 132 IAVKGWLEESSIKVEDAYEML----KNY-VNRFIYTSIERDGTLTG-------------IE---EIERFWGDEEFIYAGG 190 (228)
T ss_pred EecCCCeEcCCCCHHHHHHHH----HHH-hCEEEEEeccchhcccC-------------HH---HHHHhcCCCCEEEECC
Confidence 35432 2344554433 334 56677653 3333333 12 2333335899999999
Q ss_pred CCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 216 INTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 216 I~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|.+.+|+.++.+.|+++|.+|++++..
T Consensus 191 v~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 191 VSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 999999999998999999999998654
No 164
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.85 E-value=0.00097 Score=61.67 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=97.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEec
Q 017148 66 PIVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR 142 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR 142 (376)
.+.+.|...++..+.+..+.++++|+|.+ ||-=|.-+++. .|| .++++++++.. ++++.+|+-
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~----~~G----------~~~v~~lr~~~~~~~lDvHLm 73 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL----SFG----------PPVVKSLRKHLPNTFLDCHLM 73 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc----CcC----------HHHHHHHHhcCCCCCEEEEEC
Confidence 36677888899999999999999998875 44334333321 235 35677777776 789999987
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc-----------CCC------CCC-CCC----CC--Ccc-----
Q 017148 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL-----------NGI------SPA-ENR----TI--PPL----- 193 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~-----------~g~------~~~-~~~----~~--~~~----- 193 (376)
. ++ .+..++ .+.++|+|.|++|.-.... .|. .+. +.+ .+ +..
T Consensus 74 ~--~~---p~~~i~----~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~ 144 (228)
T PTZ00170 74 V--SN---PEKWVD----DFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLV 144 (228)
T ss_pred C--CC---HHHHHH----HHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHh
Confidence 4 22 222222 2336899999999652110 110 000 000 00 000
Q ss_pred ---------------cHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 194 ---------------KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 194 ---------------~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..+.+.++++..+.+.|...||| +.+.+..+.+.|+|.+.+||++...+.
T Consensus 145 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKAKD 209 (228)
T ss_pred hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCC
Confidence 01233444444445778899999 668888899999999999999877665
No 165
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.82 E-value=6.9e-05 Score=69.31 Aligned_cols=76 Identities=18% Similarity=0.364 Sum_probs=59.0
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+++. ++.+++-.......|. +.+++.+.++.+. +++||++.|||+|.+|++++++.|||.|.+|++++
T Consensus 39 ~~~~-~~~l~ivDldga~~g~---------~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~- 106 (228)
T PRK04128 39 FSEY-VDKIHVVDLDGAFEGK---------PKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF- 106 (228)
T ss_pred HHHh-CCEEEEEECcchhcCC---------cchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-
Confidence 4455 8888885444332332 1237788888876 58999999999999999999999999999999999
Q ss_pred CCchhhHhh
Q 017148 242 NPWYTLGHV 250 (376)
Q Consensus 242 ~P~lf~~~~ 250 (376)
||.++ +++
T Consensus 107 ~~~~l-~~~ 114 (228)
T PRK04128 107 DLEFL-EKV 114 (228)
T ss_pred CHHHH-HHH
Confidence 99974 444
No 166
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.82 E-value=0.0016 Score=60.27 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=44.8
Q ss_pred cHHHHHHHHhhCCCC-eEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 194 KYEYYYALLRDFPDL-TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 194 ~~~~v~~~~~~~~~i-pVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+.+.++++++.. ++ ||+.-|||++.+++++++..|||+|.+|+++..||.
T Consensus 171 ~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 171 PPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred CHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 467788877754 67 999999999999999999999999999999999987
No 167
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.81 E-value=0.00018 Score=80.70 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC--Cccc
Q 017148 118 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI--PPLK 194 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~--~~~~ 194 (376)
.++-+.++|..+|+.. +.||+||+-.+. ...+ ++.. ..++|+|.|+|.|... |++.+....+ .-+.
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~-~vg~---ia~g----vaka~aD~I~IdG~~G---GTGAap~~~~~~~GlP 1047 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEP-GVGT---IATG----VAKAYADLITISGYDG---GTGASPLTSVKYAGSP 1047 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCC-CccH---HHhC----hhhcCCCEEEEeCCCC---CcccccHHHHhhCCcc
Confidence 4677888899998876 679999988641 1122 2111 2368999999988653 2111111000 0111
Q ss_pred HHH-HH----HHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 195 YEY-YY----ALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 195 ~~~-v~----~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|++ +. .+.+.- -+|.+++.|++.|+.|+..++..|||.|.+||++|.-
T Consensus 1048 ~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lia 1102 (1485)
T PRK11750 1048 WELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVA 1102 (1485)
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHH
Confidence 332 22 222221 2589999999999999999999999999999999854
No 168
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.80 E-value=0.0037 Score=60.10 Aligned_cols=205 Identities=14% Similarity=0.163 Sum_probs=113.9
Q ss_pred CCCeecCCcEEEccCCCCChHHH-HHHHHHhCCCcEEEecceeecccc-cccchhhhhhccCCCCCCEEEEecC-CCHHH
Q 017148 2 VARQYLPPWFSVAPMMDWTDNHY-RTLARLISKHAWLYTEMLAAETII-YQQGNLDRFLAFSPEQHPIVLQIGG-SNLDN 78 (376)
Q Consensus 2 i~~~~l~nri~lAPM~~~td~~~-r~~~~~~Gg~gl~~te~v~~~~~~-~~~~~~~~~~~~~~~~~p~~vQL~g-~~~~~ 78 (376)
|++.+|.+|+++- -+.+.+... +....+.| +.++ |=.+.-..+. ........++ ...+..+..+-.| .+.++
T Consensus 77 i~~~~~~sRl~~G-tg~y~s~~~~~~a~~asg-~e~v-Tva~rr~~~~~~~~~~~~~~~--~~~~~~~lpNTag~~ta~e 151 (326)
T PRK11840 77 VAGKTFSSRLLVG-TGKYKDFEETAAAVEASG-AEIV-TVAVRRVNVSDPGAPMLTDYI--DPKKYTYLPNTAGCYTAEE 151 (326)
T ss_pred ECCEEEecceeEe-cCCCCCHHHHHHHHHHhC-CCEE-EEEEEeecCcCCCcchHHHhh--hhcCCEECccCCCCCCHHH
Confidence 6788999999885 334555544 44445554 6554 3333222211 1112222222 2233334444444 46888
Q ss_pred HHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHH
Q 017148 79 LAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
-+..|+++.++ |-++|-|-. .... -.++.|+....+-.+.+.+. ++-+.+-+. ++ .. .
T Consensus 152 Av~~a~lare~~~~~~iKlEv-------i~e~---~~llpd~~~~v~aa~~L~~~-Gf~v~~yc~---~d---~~-~--- 210 (326)
T PRK11840 152 AVRTLRLAREAGGWDLVKLEV-------LGDA---KTLYPDMVETLKATEILVKE-GFQVMVYCS---DD---PI-A--- 210 (326)
T ss_pred HHHHHHHHHHhcCCCeEEEEE-------cCCC---CCcccCHHHHHHHHHHHHHC-CCEEEEEeC---CC---HH-H---
Confidence 99999999886 457776632 2111 12445555544444443221 333322221 22 22 1
Q ss_pred HHHHhhcCCccEEEEcc-CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 158 IYKVSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~-r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
++.+++.|+. .|-+ ....=+|.+ ..+-+.+..+++. +++|||..+||.+++|+..+++.|||+|.+.
T Consensus 211 -a~~l~~~g~~--avmPl~~pIGsg~g--------v~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 211 -AKRLEDAGAV--AVMPLGAPIGSGLG--------IQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred -HHHHHhcCCE--EEeeccccccCCCC--------CCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3345578883 3433 221111111 1135666676665 5899999999999999999999999999999
Q ss_pred hHHhhCCc
Q 017148 237 RAAYQNPW 244 (376)
Q Consensus 237 Ra~l~~P~ 244 (376)
+|...-++
T Consensus 279 SaIa~a~d 286 (326)
T PRK11840 279 TAIAEAKN 286 (326)
T ss_pred ceeccCCC
Confidence 99874433
No 169
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.80 E-value=0.00055 Score=62.14 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+....-++.+.+.|+|.||+.+- +|..+..+.+.+.+-+.++++.+. .+.+|+-+..... +. +.+
T Consensus 68 ~~~k~~eve~A~~~GAdevdvv~~-----------~g~~~~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l-~~-~~i 133 (203)
T cd00959 68 TEVKVAEAREAIADGADEIDMVIN-----------IGALKSGDYEAVYEEIAAVVEACG-GAPLKVILETGLL-TD-EEI 133 (203)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeec-----------HHHHhCCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCC-CH-HHH
Confidence 344455577788889999999641 233333455666666777776653 3444443322211 22 233
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017148 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
..+.+++.++|+|+|-...+... .| + .+.+...+.+..+ .++||-++|||.|.+++.++++.||+-+
T Consensus 134 ~~a~ria~e~GaD~IKTsTG~~~-~~---a-----t~~~v~~~~~~~~--~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 134 IKACEIAIEAGADFIKTSTGFGP-GG---A-----TVEDVKLMKEAVG--GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred HHHHHHHHHhCCCEEEcCCCCCC-CC---C-----CHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 34566777899999987643210 11 1 1111334444444 3799999999999999999999998854
No 170
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.78 E-value=0.0025 Score=59.74 Aligned_cols=162 Identities=17% Similarity=0.203 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHhcc-cCccEEEEecC--
Q 017148 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIAAN-TNVPVSVKCRI-- 143 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~~~-~~~pv~vKiR~-- 143 (376)
.+++...++++.+.+.|+|.|||-+ |.+.-.-.| ..=-+|- -..+...++++.+++. .++|+.+=.=.
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGv--PfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np 105 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGV--PFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP 105 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecC--CCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH
Confidence 4678999999999999999999954 432111000 0000010 3568899999999954 67887664321
Q ss_pred ----CCCC------------C---c-cHHHHHHHHHHHhhcCCccEEEEccCc-c------------------ccCCCCC
Q 017148 144 ----GVDD------------H---D-SYNQLCDFIYKVSSLSPTRHFIIHSRK-A------------------LLNGISP 184 (376)
Q Consensus 144 ----g~~~------------~---~-~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~------------------~~~g~~~ 184 (376)
|.+. . + .+++ .+.+.+.+++.|++.|-+-.-+ . ...|..+
T Consensus 106 i~~~Gie~F~~~~~~~GvdGlivpDLP~ee-~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG 184 (265)
T COG0159 106 IFNYGIEKFLRRAKEAGVDGLLVPDLPPEE-SDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTG 184 (265)
T ss_pred HHHhhHHHHHHHHHHcCCCEEEeCCCChHH-HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccC
Confidence 1111 0 0 1111 1223444556777777653211 0 0113333
Q ss_pred CCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
........ ..+.+..+++ +.++||..-=||++++++.++.+. ||||.+|+++..
T Consensus 185 ~~~~~~~~-~~~~v~~vr~-~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 185 ARNPVSAD-VKELVKRVRK-YTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred CCcccchh-HHHHHHHHHH-hcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 33221111 2345555544 459999999999999999999998 999999999753
No 171
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.74 E-value=0.00014 Score=67.78 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=62.1
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.+++.|++.|++---.... |. ..+.+.+.++.+.+ ++||.+.|||+|.+|+++++..||+-|.+|.++
T Consensus 39 ~~~~~~g~~~l~ivDLd~~~-g~---------~~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 39 LAWQRDGAEWIHLVDLDAAF-GR---------GSNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred HHHHHCCCCEEEEEeccccC-CC---------CccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 34557999999875433211 21 12367888888875 899999999999999999999999999999999
Q ss_pred hhCCchhhH
Q 017148 240 YQNPWYTLG 248 (376)
Q Consensus 240 l~~P~lf~~ 248 (376)
+.||.++.+
T Consensus 108 l~~p~l~~~ 116 (241)
T PRK14024 108 LENPEWCAR 116 (241)
T ss_pred hCCHHHHHH
Confidence 999998643
No 172
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.73 E-value=0.00018 Score=66.41 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=63.1
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.++|.--.....|. ..+.+.+.++.+.. ++||...|||.+.++++++++.|||.|.+|..
T Consensus 34 a~~~~~~g~~~l~v~dl~~~~~g~---------~~~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~ 103 (230)
T TIGR00007 34 AKKWEEEGAERIHVVDLDGAKEGG---------PVNLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA 103 (230)
T ss_pred HHHHHHcCCCEEEEEeCCccccCC---------CCcHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH
Confidence 344578999999996544322221 12367788887764 89999999999999999999999999999999
Q ss_pred HhhCCchhhH
Q 017148 239 AYQNPWYTLG 248 (376)
Q Consensus 239 ~l~~P~lf~~ 248 (376)
++.||.++.+
T Consensus 104 ~l~d~~~~~~ 113 (230)
T TIGR00007 104 AVENPDLVKE 113 (230)
T ss_pred HhhCHHHHHH
Confidence 9999988643
No 173
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.72 E-value=0.00079 Score=62.97 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=119.0
Q ss_pred hHHHHHHH-HHhCCCcEEEecceeecccccccc-hhhhhh-----cc-CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC
Q 017148 21 DNHYRTLA-RLISKHAWLYTEMLAAETIIYQQG-NLDRFL-----AF-SPEQHPIVLQIGGSNLDNLAKATELANAYNYD 92 (376)
Q Consensus 21 d~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~~-~~~~~~-----~~-~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d 92 (376)
+...+.+. -+.||++-++.|-....+...... .+-..+ ++ ..-.-|+++|+.-+++. .+...+...|+|
T Consensus 29 e~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~---aalaiA~A~ga~ 105 (254)
T PF03437_consen 29 ERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPK---AALAIAAATGAD 105 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCH---HHHHHHHHhCCC
Confidence 44444442 355789988888777665433211 111100 01 12367999999987764 344456678999
Q ss_pred EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE
Q 017148 93 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 170 (376)
Q Consensus 93 ~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I 170 (376)
+|-+|.=|-.. + +++ |.+..+...+.+.-+.+...+.+ .|.+|...-..+ .++++.++ ...+..++|+|
T Consensus 106 FIRv~~~~g~~-~--~d~--G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~-~~~~~~~~---~a~~~~~aDav 176 (254)
T PF03437_consen 106 FIRVNVFVGAY-V--TDE--GIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLAT-RDLEEAAK---DAVERGGADAV 176 (254)
T ss_pred EEEecCEEcee-c--ccC--ccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCC-CCHHHHHH---HHHHhcCCCEE
Confidence 99998655442 1 232 33445555555554444333211 122333322222 23554432 33457899999
Q ss_pred EEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 171 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 171 ~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+|+|... |. +...+.+.++++..+ +||+.++|+ |++.+.+.++. |||+.+|+.+-.|-.+
T Consensus 177 iVtG~~T---G~---------~~~~~~l~~vr~~~~-~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~G~~ 236 (254)
T PF03437_consen 177 IVTGKAT---GE---------PPDPEKLKRVREAVP-VPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKDGKW 236 (254)
T ss_pred EECCccc---CC---------CCCHHHHHHHHhcCC-CCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeCCEe
Confidence 9998652 21 122667777777664 999999999 88999998874 9999999998766664
No 174
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.71 E-value=0.0007 Score=61.75 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=81.2
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHH
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFI 158 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i 158 (376)
..-++.+.+.|+|.||+-+- ||.-...+.+.+.+-+.++++.+ +.|+-|=+-.+.-. -+++. .+
T Consensus 73 ~~E~~~Av~~GAdEiDvv~n-----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~---~~ei~-~a 137 (211)
T TIGR00126 73 LYETKEAIKYGADEVDMVIN-----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLT---DEEIR-KA 137 (211)
T ss_pred HHHHHHHHHcCCCEEEeecc-----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCC---HHHHH-HH
Confidence 33445677789999999641 24333456677777777777766 44544423333211 12333 34
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.+++.++|+|+|-.+.+... .| + .+.+...+.+.++. +++|-+.|||+|.+++.++++.||+-+...
T Consensus 138 ~~ia~eaGADfvKTsTGf~~-~g---a-----t~~dv~~m~~~v~~--~v~IKaaGGirt~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 138 CEICIDAGADFVKTSTGFGA-GG---A-----TVEDVRLMRNTVGD--TIGVKASGGVRTAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred HHHHHHhCCCEEEeCCCCCC-CC---C-----CHHHHHHHHHHhcc--CCeEEEeCCCCCHHHHHHHHHHhhHHhCcc
Confidence 56677899999987654310 11 1 11112333444432 699999999999999999999988865543
No 175
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.70 E-value=0.0031 Score=57.07 Aligned_cols=184 Identities=17% Similarity=0.135 Sum_probs=101.1
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccc--cchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEE
Q 017148 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ--QGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEI 94 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~--~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~I 94 (376)
+|+++..-..++.+.| ++++ +++....--+. ......+.+..+.. .-.+-++-++. ..+..+.+.+.|+|+|
T Consensus 4 CGi~~~ed~~~a~~~G-vd~i--g~i~~~~s~R~v~~~~a~~l~~~~~~~-~~~V~v~vn~~--~~~i~~ia~~~~~d~V 77 (203)
T cd00405 4 CGITTLEDALAAAEAG-ADAI--GFIFAPKSPRYVSPEQAREIVAALPPF-VKRVGVFVNED--LEEILEIAEELGLDVV 77 (203)
T ss_pred CCCCCHHHHHHHHHcC-CCEE--EEecCCCCCCCCCHHHHHHHHHhCCCC-CcEEEEEeCCC--HHHHHHHHHhcCCCEE
Confidence 5777777766666655 6544 33322211111 11112233322221 12233343331 2334455667899999
Q ss_pred EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEcc
Q 017148 95 NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 174 (376)
Q Consensus 95 eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~ 174 (376)
.||..-| + +.++.+++..+.++...+.. ...... +. . .....|+|++.+..
T Consensus 78 qlhg~e~-----------------~----~~~~~l~~~~~~~~i~~i~~--~~~~~~-~~----~-~~~~~~aD~il~dt 128 (203)
T cd00405 78 QLHGDES-----------------P----EYCAQLRARLGLPVIKAIRV--KDEEDL-EK----A-AAYAGEVDAILLDS 128 (203)
T ss_pred EECCCCC-----------------H----HHHHHHHhhcCCcEEEEEec--CChhhH-HH----h-hhccccCCEEEEcC
Confidence 9974211 1 22344454445555533443 221111 11 1 12347899998876
Q ss_pred CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cCeeEEchHHhhCCch
Q 017148 175 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWY 245 (376)
Q Consensus 175 r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad~VmiGRa~l~~P~l 245 (376)
.+....|-++ .+..|+.+.++. .++|+++.||| |++.+.++++.+ +++|.+.+++...|-.
T Consensus 129 ~~~~~~Gg~g------~~~~~~~l~~~~---~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 129 KSGGGGGGTG------KTFDWSLLRGLA---SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CCCCCCCCCc------ceEChHHhhccc---cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 5542211111 234577776554 37999999999 999999999976 9999999999887764
No 176
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.68 E-value=0.00082 Score=62.97 Aligned_cols=150 Identities=23% Similarity=0.287 Sum_probs=82.5
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC------------CCC
Q 017148 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVD 146 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~------------g~~ 146 (376)
..+.|+..+++|+++|-+.. ....|||++ +-+..+++.+++|+..|==+ |-|
T Consensus 70 ~~~~a~~y~~~GA~aiSVlT--------e~~~F~Gs~--------~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GAD 133 (254)
T PF00218_consen 70 PAEIAKAYEEAGAAAISVLT--------EPKFFGGSL--------EDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGAD 133 (254)
T ss_dssp HHHHHHHHHHTT-SEEEEE----------SCCCHHHH--------HHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-S
T ss_pred HHHHHHHHHhcCCCEEEEEC--------CCCCCCCCH--------HHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCC
Confidence 34566677789999998863 234577765 34666777788999887211 111
Q ss_pred CC------ccHHHHHHHHHHHhhcCCccEEE-EccCcc----ccCCC--CCCCCCCCC--cccHHHHHHHHhhCC-CCeE
Q 017148 147 DH------DSYNQLCDFIYKVSSLSPTRHFI-IHSRKA----LLNGI--SPAENRTIP--PLKYEYYYALLRDFP-DLTF 210 (376)
Q Consensus 147 ~~------~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~----~~~g~--~~~~~~~~~--~~~~~~v~~~~~~~~-~ipV 210 (376)
-. -+-+.+.+ +...+...|.+.+. ||...- ...|. -+-+++... ..+.....++....| ++.+
T Consensus 134 aVLLI~~~L~~~~l~~-l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~ 212 (254)
T PF00218_consen 134 AVLLIAAILSDDQLEE-LLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIV 212 (254)
T ss_dssp EEEEEGGGSGHHHHHH-HHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEE
T ss_pred EeehhHHhCCHHHHHH-HHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeE
Confidence 00 00111111 12233345555432 554321 00010 011222222 223344455555444 5789
Q ss_pred EEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 211 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+-+||.+++|+..+...|+|+|.||++++..|..
T Consensus 213 iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~ 247 (254)
T PF00218_consen 213 ISESGIKTPEDARRLARAGADAVLVGEALMRSPDP 247 (254)
T ss_dssp EEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSH
T ss_pred EeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCH
Confidence 99999999999999999999999999999999985
No 177
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.67 E-value=0.0065 Score=57.93 Aligned_cols=153 Identities=12% Similarity=0.208 Sum_probs=92.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe-c
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC-R 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi-R 142 (376)
..|++++|=+... + +.++.+.+.||+.|.+-.. ......+.+...++++-.++ .++|+-..+ .
T Consensus 74 ~vpv~lHlDH~~~--~-e~i~~Al~~G~tsVm~d~s------------~~~~~eni~~t~~v~~~a~~-~gv~veaE~gh 137 (281)
T PRK06806 74 KVPVAVHFDHGMT--F-EKIKEALEIGFTSVMFDGS------------HLPLEENIQKTKEIVELAKQ-YGATVEAEIGR 137 (281)
T ss_pred CCCEEEECCCCCC--H-HHHHHHHHcCCCEEEEcCC------------CCCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 4466666654321 1 2334455567777766321 11122333444444444332 355654432 3
Q ss_pred CCCCC---------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe
Q 017148 143 IGVDD---------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 213 (376)
Q Consensus 143 ~g~~~---------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n 213 (376)
+|-.+ ..+.++..++ .++.|+|+|.+.-++..-.. + .-+++.++.+.++.+.. ++|+++-
T Consensus 138 lG~~d~~~~~~g~s~t~~eea~~f----~~~tg~DyLAvaiG~~hg~~--~----~~~~l~~~~L~~i~~~~-~iPlV~h 206 (281)
T PRK06806 138 VGGSEDGSEDIEMLLTSTTEAKRF----AEETDVDALAVAIGNAHGMY--N----GDPNLRFDRLQEINDVV-HIPLVLH 206 (281)
T ss_pred ECCccCCcccccceeCCHHHHHHH----HHhhCCCEEEEccCCCCCCC--C----CCCccCHHHHHHHHHhc-CCCEEEE
Confidence 33111 1234454433 34579999999665542111 1 12456789999998764 8999999
Q ss_pred c--CCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 214 G--GINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 214 G--gI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
| || +.+++.++++.|++.|-+.+++..+|.
T Consensus 207 G~SGI-~~e~~~~~i~~G~~kinv~T~i~~a~~ 238 (281)
T PRK06806 207 GGSGI-SPEDFKKCIQHGIRKINVATATFNSVI 238 (281)
T ss_pred CCCCC-CHHHHHHHHHcCCcEEEEhHHHHHHHH
Confidence 9 99 678899999999999999999998654
No 178
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.67 E-value=0.00098 Score=63.12 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---cCccEEEEecC-CC--CCCcc
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRI-GV--DDHDS 150 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~~~pv~vKiR~-g~--~~~~~ 150 (376)
+.+...++.+.+.|+|.|++.. + +|+. ..+.+.+.+.++++. .++|+.+=... |. +...+
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~-----~------~g~~---~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~ 158 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHV-----N------VGSE---TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYD 158 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEE-----e------cCCh---hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCcc
Confidence 3445556778888999998853 1 1110 012233334444332 47787663111 11 11112
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC--CHHHHHHHH--
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL-- 226 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~--s~~da~~~l-- 226 (376)
.++ +....+++.+.|+|+|-.+ +.+ ..+.+.++.+.. ++||++.|||. |.+++.+++
T Consensus 159 ~~~-i~~a~~~a~e~GAD~vKt~-----~~~------------~~~~l~~~~~~~-~ipV~a~GGi~~~~~~~~l~~v~~ 219 (267)
T PRK07226 159 PEV-VAHAARVAAELGADIVKTN-----YTG------------DPESFREVVEGC-PVPVVIAGGPKTDTDREFLEMVRD 219 (267)
T ss_pred HHH-HHHHHHHHHHHCCCEEeeC-----CCC------------CHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHHH
Confidence 222 2223455567999999654 111 145666766543 79999999999 888888776
Q ss_pred --HcCcCeeEEchHHhhCCch
Q 017148 227 --RKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 227 --~~Gad~VmiGRa~l~~P~l 245 (376)
+.||+|+.+||.++..|..
T Consensus 220 ~~~aGA~Gis~gr~i~~~~~p 240 (267)
T PRK07226 220 AMEAGAAGVAVGRNVFQHEDP 240 (267)
T ss_pred HHHcCCcEEehhhhhhcCCCH
Confidence 6899999999999988773
No 179
>PRK08005 epimerase; Validated
Probab=97.66 E-value=0.0047 Score=56.30 Aligned_cols=154 Identities=17% Similarity=0.234 Sum_probs=94.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
+.++|...|+..+.+-.+.++++|+|.+ |+-=|.-+++. .|| -++++++++.++.|+.|-+=.
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~----tfG----------~~~i~~l~~~t~~~~DvHLMv- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNI----TFG----------MKTIQAVAQQTRHPLSFHLMV- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc----ccC----------HHHHHHHHhcCCCCeEEEecc-
Confidence 5677888999999999999999998875 44334333321 144 356777777777787665443
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-c---------cCC----C--CCCC----------------------
Q 017148 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-L---------LNG----I--SPAE---------------------- 186 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-~---------~~g----~--~~~~---------------------- 186 (376)
.+ .+..+ ... .++|+|.|++|.-.. . ..| . ++..
T Consensus 68 -~~---P~~~i---~~~-~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~P 139 (210)
T PRK08005 68 -SS---PQRWL---PWL-AAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEP 139 (210)
T ss_pred -CC---HHHHH---HHH-HHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecC
Confidence 22 22222 222 358999999985421 0 001 0 0000
Q ss_pred ---CCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 187 ---NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 187 ---~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+...-+..++-++++++...+..|-..||| +.+.+..+.+.|||.+.+|+++..++.
T Consensus 140 Gf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 140 DGRGQQFIAAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAAAGAQHLVIGRALFTTAN 199 (210)
T ss_pred CCccceecHHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCC
Confidence 000000112334444443334568899999 588888999999999999999886665
No 180
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.65 E-value=0.0049 Score=56.11 Aligned_cols=152 Identities=17% Similarity=0.206 Sum_probs=88.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccc-cC--CCCc------cccccCCHHHHHHHHHHHhc---
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV-AG--HGCF------GVSLMLDPKFVGEAMSVIAA--- 131 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v-~r--~g~y------G~~l~~~~~~~~eiv~~v~~--- 131 (376)
..+++.=+-+.++++..+.++.+.+.|+..||+-+-.|...- .+ +..| |+.-.-+.+.+...+++=.+
T Consensus 9 ~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 9 KLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV 88 (206)
T ss_pred hCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE
Confidence 345666677889999999999999999999999764442100 00 0001 11112222222222221000
Q ss_pred -------------ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017148 132 -------------NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 132 -------------~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
..+.++.. | ..+.+|+.. +.+.|+|+|.+... .....+++
T Consensus 89 sp~~~~~v~~~~~~~~~~~~~----G---~~t~~E~~~-----A~~~Gad~vk~Fpa---------------~~~G~~~l 141 (206)
T PRK09140 89 TPNTDPEVIRRAVALGMVVMP----G---VATPTEAFA-----ALRAGAQALKLFPA---------------SQLGPAGI 141 (206)
T ss_pred CCCCCHHHHHHHHHCCCcEEc----c---cCCHHHHHH-----HHHcCCCEEEECCC---------------CCCCHHHH
Confidence 00111111 1 012222211 12456666665221 11236778
Q ss_pred HHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 199 YALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 199 ~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+++++.++ ++|+++.||| +.+.+.+.+++|+|+|.+++++....
T Consensus 142 ~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~ 186 (206)
T PRK09140 142 KALRAVLPPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRPG 186 (206)
T ss_pred HHHHhhcCCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcccc
Confidence 88877775 6999999999 89999999999999999999997643
No 181
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.64 E-value=0.0024 Score=57.22 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=90.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc-----------cccCCCCccccccCCHHHHHHHHHH----
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSP-----------KVAGHGCFGVSLMLDPKFVGEAMSV---- 128 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~-----------~v~r~g~yG~~l~~~~~~~~eiv~~---- 128 (376)
..+++.=+.+.++++..+.++.+.+.|++.|++..-.+.. ..+..+ ++.++.. +.+...++.
T Consensus 11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g--~gtvl~~-d~~~~A~~~gAdg 87 (187)
T PRK07455 11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIG--TGTILTL-EDLEEAIAAGAQF 87 (187)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEe--EEEEEcH-HHHHHHHHcCCCE
Confidence 3455555777888888888888888888888886543321 001111 1222221 333222221
Q ss_pred ------------HhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHH
Q 017148 129 ------------IAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196 (376)
Q Consensus 129 ------------v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~ 196 (376)
+++..+++. -+|. .+..|+.+ +.+.|+|+|-+..... ....+
T Consensus 88 v~~p~~~~~~~~~~~~~~~~~----i~G~---~t~~e~~~-----A~~~Gadyv~~Fpt~~--------------~~G~~ 141 (187)
T PRK07455 88 CFTPHVDPELIEAAVAQDIPI----IPGA---LTPTEIVT-----AWQAGASCVKVFPVQA--------------VGGAD 141 (187)
T ss_pred EECCCCCHHHHHHHHHcCCCE----EcCc---CCHHHHHH-----HHHCCCCEEEECcCCc--------------ccCHH
Confidence 011112221 1341 33444432 2358999999844210 11257
Q ss_pred HHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
++++++..++++|+++.||| +++++.+.++.|+++|.++++++.
T Consensus 142 ~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 142 YIKSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 78888877778999999999 889999999999999999998764
No 182
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.64 E-value=0.00024 Score=65.98 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=62.7
Q ss_pred HHHhhc-CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017148 159 YKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 159 ~~~~e~-~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
++.+.+ .|++.|+|--=.....| .+.+.+.+.++.+. +++||..-|||+|.+|++++++.||+-|.+|+
T Consensus 37 a~~~~~~~Ga~~l~ivDLd~a~~~---------~~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 37 IAYYSQFECVNRIHIVDLIGAKAQ---------HAREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred HHHHHhccCCCEEEEEECcccccC---------CcchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 334455 69999988533222112 12247788888875 48999999999999999999999999999999
Q ss_pred HHhhCCchhhHhhh
Q 017148 238 AAYQNPWYTLGHVD 251 (376)
Q Consensus 238 a~l~~P~lf~~~~~ 251 (376)
.++.||.++ +++.
T Consensus 107 ~a~~~~~~l-~~~~ 119 (234)
T PRK13587 107 KGIQDTDWL-KEMA 119 (234)
T ss_pred hHhcCHHHH-HHHH
Confidence 999999975 4443
No 183
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.63 E-value=0.0082 Score=59.72 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=93.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
+.++.+-|--.|+..+. ++.+.++|+|.+-+|+..+ .+.+.+.++++++. ++-+.+- -+
T Consensus 226 ~~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~-----------------~~ti~~ai~~akk~-GikvgVD-~l 284 (391)
T PRK13307 226 DAFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP-----------------ISTIEKAIHEAQKT-GIYSILD-ML 284 (391)
T ss_pred CCeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC-----------------HHHHHHHHHHHHHc-CCEEEEE-Ec
Confidence 56799999988988775 6677899999999986322 12355566666653 4333331 11
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017148 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+. .+..+.+ ..+ ..++|.+.+|...... +. . ..|+.+.++++...+++|...|||. .+++.
T Consensus 285 np---~tp~e~i---~~l--~~~vD~Vllht~vdp~-~~--------~-~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~ 345 (391)
T PRK13307 285 NV---EDPVKLL---ESL--KVKPDVVELHRGIDEE-GT--------E-HAWGNIKEIKKAGGKILVAVAGGVR-VENVE 345 (391)
T ss_pred CC---CCHHHHH---HHh--hCCCCEEEEccccCCC-cc--------c-chHHHHHHHHHhCCCCcEEEECCcC-HHHHH
Confidence 11 1222222 222 4689999999532111 11 0 1256666666544578999999997 89999
Q ss_pred HHHHcCcCeeEEchHHhhCCc
Q 017148 224 AALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 224 ~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++++.|||.+.+||++...+.
T Consensus 346 ~l~~aGADivVVGsaIf~a~D 366 (391)
T PRK13307 346 EALKAGADILVVGRAITKSKD 366 (391)
T ss_pred HHHHcCCCEEEEeHHHhCCCC
Confidence 999999999999999876555
No 184
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.62 E-value=0.0014 Score=59.80 Aligned_cols=157 Identities=18% Similarity=0.304 Sum_probs=86.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
+.+.|...|+..+.+.++.+.+.|+|.|.+-..- +. +..+..+..+.++++++.+..++.+-+-. .
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d--------~~----~~~~~~~~~~~~~~i~~~~~~~~~v~l~v--~ 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVMD--------GH----FVPNLTIGPPVVEAIRKVTKLPLDVHLMV--E 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCcc--------CC----cCCCcCcCHHHHHHHHhcCCCcEEEEeee--C
Confidence 6677888899999999999999999999994210 11 10111123455566655443333332222 1
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccc--------c--CCC---------CC----------CC-----------
Q 017148 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--------L--NGI---------SP----------AE----------- 186 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--------~--~g~---------~~----------~~----------- 186 (376)
+ ..+. +..+ .++|+|.++||+.... . .|. +. .+
T Consensus 72 d---~~~~---i~~~-~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~ 144 (220)
T PRK05581 72 N---PDRY---VPDF-AKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGF 144 (220)
T ss_pred C---HHHH---HHHH-HHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCC
Confidence 1 1111 1222 2578888887764200 0 000 00 00
Q ss_pred -CCCCCcccHHHHHHHHhhCC--C--CeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 187 -NRTIPPLKYEYYYALLRDFP--D--LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 187 -~~~~~~~~~~~v~~~~~~~~--~--ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.....+...+.+.++++... + .+|...|||+. +++.++++.|+|+|.+|++++.+|..
T Consensus 145 tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d~ 207 (220)
T PRK05581 145 GGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPDY 207 (220)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCCH
Confidence 00000001122333332211 1 33557899977 89999998999999999999987774
No 185
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.62 E-value=0.0023 Score=58.11 Aligned_cols=154 Identities=18% Similarity=0.287 Sum_probs=99.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEec--CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN--~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.++..+|...+...+.+-.+.++++|+|.|-+- =|.-+++.+ +| -.+++++++.+..|+.|-+-
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiT----fG----------p~~v~~l~~~t~~p~DvHLM 69 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNIT----FG----------PPVVKALRKITDLPLDVHLM 69 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcc----cC----------HHHHHHHhhcCCCceEEEEe
Confidence 457888999999999999999999999976553 333333322 45 36788888888888888655
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-----------c---cC----------------------------
Q 017148 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----------L---LN---------------------------- 180 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-----------~---~~---------------------------- 180 (376)
. .+ .+..++. +.++|+|+|++|.-.. . ..
T Consensus 70 V--~~---p~~~i~~----fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsV 140 (220)
T COG0036 70 V--EN---PDRYIEA----FAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSV 140 (220)
T ss_pred c--CC---HHHHHHH----HHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeE
Confidence 4 22 2233322 2368999999985310 0 00
Q ss_pred --CCCCCCCCCCCcccHHHHHHHHhhCC---CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 181 --GISPAENRTIPPLKYEYYYALLRDFP---DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 181 --g~~~~~~~~~~~~~~~~v~~~~~~~~---~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+++. ..+ +...+-++++++... ++-|-..||| +.+.+..+.+.|||.+..|+++..++++
T Consensus 141 nPGfgGQ--~Fi-~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d~ 206 (220)
T COG0036 141 NPGFGGQ--KFI-PEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADDY 206 (220)
T ss_pred CCCCccc--ccC-HHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCccH
Confidence 11110 000 111233444433322 4557788999 7888888888999999999998888873
No 186
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.54 E-value=0.0071 Score=55.34 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=124.1
Q ss_pred hHHHHHHH-HHhCCCcEEEecceeecccccccch-hhh-hh----c-cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC
Q 017148 21 DNHYRTLA-RLISKHAWLYTEMLAAETIIYQQGN-LDR-FL----A-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYD 92 (376)
Q Consensus 21 d~~~r~~~-~~~Gg~gl~~te~v~~~~~~~~~~~-~~~-~~----~-~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d 92 (376)
|...+.+. -+-||++-++.|..-..++.....+ +-. +. + ..+-..|+++++.-|++- .|..++...|.|
T Consensus 34 d~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~v---aA~~IA~a~gA~ 110 (263)
T COG0434 34 DRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAV---AALAIAYAVGAD 110 (263)
T ss_pred HHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeeccccH---HHHHHHHhcCCC
Confidence 44555553 3668899999998777665442211 111 11 1 134578999999988763 455667778999
Q ss_pred EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEE
Q 017148 93 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF 170 (376)
Q Consensus 93 ~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I 170 (376)
+|-+|.-|-.. -+++ | -++.+...+.+.-..+...+.+ .+-||...-..+ .++++.+ ...++..++|++
T Consensus 111 FIRVN~~tg~~---~tdq-G-iieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~-~~~~~~v---~dtver~~aDaV 181 (263)
T COG0434 111 FIRVNVLTGAY---ATDQ-G-IIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGN-RSLEEAV---KDTVERGLADAV 181 (263)
T ss_pred EEEEEeeeceE---eccc-c-eecchHHHHHHHHHhccCCcEEEeecchhcccccCC-cCHHHHH---HHHHHccCCCEE
Confidence 99999765542 1343 3 4555666666666665533221 344554433332 2455543 334567889999
Q ss_pred EEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 171 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 171 ~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+++|.+. |. +.+.+.+..+++. .++||++..|+ +++.+.+.++. |||+.+|+.+=.+-
T Consensus 182 I~tG~~T---G~---------~~d~~el~~a~~~-~~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 182 IVTGSRT---GS---------PPDLEELKLAKEA-VDTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred EEecccC---CC---------CCCHHHHHHHHhc-cCCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEccCC
Confidence 9998753 22 1235666666554 47999999998 78899999986 99999999776554
No 187
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.53 E-value=0.013 Score=54.73 Aligned_cols=207 Identities=16% Similarity=0.124 Sum_probs=123.8
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc-----cCCCCCCEEEEec--CCCHH
Q 017148 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQIG--GSNLD 77 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~-----~~~~~~p~~vQL~--g~~~~ 77 (376)
+..+++| ++-|....+++...| ...+++.-.... .....+. ....++. ......|+++-+= -.+++
T Consensus 8 ~~~i~~~--~~~D~~sA~~~e~~G-~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~ 84 (243)
T cd00377 8 GGPLVLP--GAWDALSARLAERAG-FKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNAL 84 (243)
T ss_pred CCcEEec--CCCCHHHHHHHHHcC-CCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHH
Confidence 3444544 667888888877776 776665533322 2211111 1111111 1234567776652 12668
Q ss_pred HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecCCC--CCCccHHH
Q 017148 78 NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIGV--DDHDSYNQ 153 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~g~--~~~~~~~~ 153 (376)
.+.+.++++.++|+++|.|.-+...++ .+.+|+.-+-.++...+.++++++..+. ++.|=-|... .....+++
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~---~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~e 161 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKK---CGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDE 161 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCcc---ccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHH
Confidence 888899999999999999976654322 3334555556778888888888776532 4555455321 11134666
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC-HHHHHHHHHcCcCe
Q 017148 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHH 232 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s-~~da~~~l~~Gad~ 232 (376)
.++. ++.+.++|+|.+-+++-. +.+.+.++.++ +++||+.+-.=.. .-...++-+.|+..
T Consensus 162 ai~R-a~ay~~AGAD~v~v~~~~-----------------~~~~~~~~~~~-~~~Pl~~~~~~~~~~~~~~~l~~lG~~~ 222 (243)
T cd00377 162 AIER-AKAYAEAGADGIFVEGLK-----------------DPEEIRAFAEA-PDVPLNVNMTPGGNLLTVAELAELGVRR 222 (243)
T ss_pred HHHH-HHHHHHcCCCEEEeCCCC-----------------CHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHCCCeE
Confidence 6665 345678999999998753 14667777776 4789887632111 12344455579999
Q ss_pred eEEchHHh
Q 017148 233 VMVGRAAY 240 (376)
Q Consensus 233 VmiGRa~l 240 (376)
|.+|-.++
T Consensus 223 v~~~~~~~ 230 (243)
T cd00377 223 VSYGLALL 230 (243)
T ss_pred EEEChHHH
Confidence 99887654
No 188
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.53 E-value=0.0015 Score=59.16 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=100.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----ccC---CCCccccccCCHHHHHHHHHHHhcccCc
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VAG---HGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v~r---~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
..+++.=|.+.++++..+.++.+.+.|++.|||.+-.|... ..+ .-..|+.-.-+++.+.+.+++ +-
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a-----GA 81 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA-----GA 81 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc-----CC
Confidence 44566667889999999999999999999999998766420 000 111244444555555554443 22
Q ss_pred cEEEEecCCCCC----------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017148 136 PVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 136 pv~vKiR~g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
.+. ++++++. ..+..|+.. . .++|++.+-+.+.... +| ..+++
T Consensus 82 ~Fi--vsP~~~~~v~~~~~~~~i~~iPG~~TptEi~~----A-~~~Ga~~vKlFPA~~~-GG-------------~~yik 140 (204)
T TIGR01182 82 QFI--VSPGLTPELAKHAQDHGIPIIPGVATPSEIML----A-LELGITALKLFPAEVS-GG-------------VKMLK 140 (204)
T ss_pred CEE--ECCCCCHHHHHHHHHcCCcEECCCCCHHHHHH----H-HHCCCCEEEECCchhc-CC-------------HHHHH
Confidence 222 2333322 012223221 2 2578888887764321 11 35667
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+..-++++|++..||| +.+.+.+.++.|+.+|.+|+.+..+..+
T Consensus 141 al~~plp~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~~~~ 185 (204)
T TIGR01182 141 ALAGPFPQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVPKDLI 185 (204)
T ss_pred HHhccCCCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcCchhh
Confidence 77766789999999999 5699999999999999999999865554
No 189
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.53 E-value=0.0006 Score=62.39 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=58.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
+.+.+..|...+.+. .+ |.. .+.+.+.++++...++||+.-|||+|+++++++++.|||+|.+|++
T Consensus 141 A~aae~~g~~ivyLe-~S----G~~---------~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsa 206 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YS----GAY---------GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNI 206 (219)
T ss_pred HHHHHHcCCeEEEeC-CC----CCc---------CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 556677887776666 22 211 2267777777653389999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017148 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
+..||.++.
T Consensus 207 i~~~p~~~~ 215 (219)
T cd02812 207 VEEDPNAAL 215 (219)
T ss_pred hhCCHHHHH
Confidence 999998753
No 190
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.51 E-value=0.0007 Score=69.13 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=47.7
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+.++|+|.|.+..-. |.+ ....+.++.+++.++++|||+ |.+.|.+.+..+++.|||+|-+|=
T Consensus 233 Lv~aGVd~i~~D~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 233 LLDAGVDVLVIDTAH----GHQ--------VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred HHHhCCCEEEEeCCC----CCc--------HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECC
Confidence 346899999985322 111 112567888888888999999 889999999999999999987543
No 191
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.51 E-value=0.00053 Score=64.65 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=61.0
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.|++--=...-.+ ...+.+.+.++.+. +++||++.|||.+.+|+++++..|++.|.+|++
T Consensus 36 a~~~~~~g~~~l~i~Dl~~~~~~---------~~~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~ 105 (258)
T PRK01033 36 VRIFNEKEVDELIVLDIDASKRG---------SEPNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTA 105 (258)
T ss_pred HHHHHHcCCCEEEEEECCCCcCC---------CcccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEEChH
Confidence 34456799999988532211011 11237888888876 489999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017148 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.+|.++.
T Consensus 106 ~~~~~~~~~ 114 (258)
T PRK01033 106 ALEDPDLIT 114 (258)
T ss_pred HhcCHHHHH
Confidence 999999753
No 192
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.51 E-value=0.016 Score=55.23 Aligned_cols=208 Identities=11% Similarity=0.079 Sum_probs=123.7
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc-----cCCCCCCEEEEe---cCCCH
Q 017148 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSNL 76 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~~ 76 (376)
+..+++| ++-|..-.+++...| ...++|-..... .+...+. ...+++. ....+.|+++-+ +|+ +
T Consensus 12 ~~~l~~p--~~~Da~SAri~e~aG-f~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~-~ 87 (285)
T TIGR02317 12 EDILQIP--GAINAMAALLAERAG-FEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGE-A 87 (285)
T ss_pred CCcEEeC--CCCCHHHHHHHHHcC-CCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCC-H
Confidence 3456666 666776666776665 666665533322 2222221 1111111 123467888876 355 8
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHH
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
....+.++.+.++|+.+|.|-=... +| +.|.+++.-+-.++...+-|++++++. +.++.|=-|........+++.+
T Consensus 88 ~~v~~tv~~~~~aG~agi~IEDq~~-pK--~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI 164 (285)
T TIGR02317 88 FNVARTVREMEDAGAAAVHIEDQVL-PK--RCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAI 164 (285)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCC-cc--ccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHH
Confidence 9999999999999999999964432 22 234334443445666666666666653 4456666665332223466776
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---cCCCCHHHHHHHHHcCcCe
Q 017148 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHH 232 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---GgI~s~~da~~~l~~Gad~ 232 (376)
+. ++...++|+|.|-+++-+. .+.+.++.++. ++|++.| |+-.-.-+++++-+.|+..
T Consensus 165 ~R-a~ay~~AGAD~vfi~g~~~-----------------~e~i~~~~~~i-~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~ 225 (285)
T TIGR02317 165 ER-AKAYVEAGADMIFPEALTS-----------------LEEFRQFAKAV-KVPLLANMTEFGKTPLFTADELREAGYKM 225 (285)
T ss_pred HH-HHHHHHcCCCEEEeCCCCC-----------------HHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcE
Confidence 65 3456679999999987321 45566777765 5788543 3321112455566689999
Q ss_pred eEEchHHhhC
Q 017148 233 VMVGRAAYQN 242 (376)
Q Consensus 233 VmiGRa~l~~ 242 (376)
|..|..++..
T Consensus 226 v~~~~~~~~a 235 (285)
T TIGR02317 226 VIYPVTAFRA 235 (285)
T ss_pred EEEchHHHHH
Confidence 9999665443
No 193
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.50 E-value=0.0084 Score=55.20 Aligned_cols=154 Identities=15% Similarity=0.267 Sum_probs=94.7
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecC
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI 143 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~ 143 (376)
+...|...|...+.+-.+.++++|+|.+ ||-=|+-+++.+ || -++++++++. ++.|+.|-+=.
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~t----fg----------~~~i~~lr~~~~~~~~dvHLMv 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLT----IG----------PMVCQALRKHGITAPIDVHLMV 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcc----cC----------HHHHHHHHhhCCCCCEEEEecc
Confidence 6778889999999999999999998875 444454444322 45 3577788877 57887775544
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----------cC----CC--CCCC---------------------
Q 017148 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LN----GI--SPAE--------------------- 186 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~----g~--~~~~--------------------- 186 (376)
.+ .+..++ . +.++|+|.|++|.-... .. |. .+..
T Consensus 72 --~~---P~~~i~---~-~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~ 142 (223)
T PRK08745 72 --EP---VDRIVP---D-FADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVN 142 (223)
T ss_pred --CC---HHHHHH---H-HHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEEC
Confidence 22 222222 2 23589999999854210 00 11 0000
Q ss_pred ----CCCCCcccHHHHHHHH---hh-CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 187 ----NRTIPPLKYEYYYALL---RD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 187 ----~~~~~~~~~~~v~~~~---~~-~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+...-+..++-+.+++ ++ ..++.|-..||| +.+.+..+.+.|||.+.+|+++...+.
T Consensus 143 PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 143 PGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPD 207 (223)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 0000000122333332 22 225678899999 588999999999999999999876554
No 194
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.48 E-value=0.00027 Score=65.46 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=59.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.++|--=.+...|. +.+++.+.++.+.. .+||...|||+|.+|++++++.||+-|.+|+.
T Consensus 35 a~~~~~~g~~~l~ivDLdaa~~g~---------~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 35 AKAFNEQGADELHIVDLDAAKEGR---------GSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGTE 104 (229)
T ss_dssp HHHHHHTT-SEEEEEEHHHHCCTH---------HHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESHH
T ss_pred HHHHHHcCCCEEEEEEccCcccCc---------hhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeChH
Confidence 344568999999986322211121 12367888888875 79999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017148 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 105 ~~~~~~~l~ 113 (229)
T PF00977_consen 105 ALEDPELLE 113 (229)
T ss_dssp HHHCCHHHH
T ss_pred HhhchhHHH
Confidence 999999854
No 195
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.44 E-value=0.003 Score=57.77 Aligned_cols=149 Identities=14% Similarity=0.181 Sum_probs=98.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----ccC--C----CCccccccCCHHHHHHHHHHHhcc
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VAG--H----GCFGVSLMLDPKFVGEAMSVIAAN 132 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v~r--~----g~yG~~l~~~~~~~~eiv~~v~~~ 132 (376)
..+++.=|.+.++++....++.+.+.|+..+||.+-.|... ..+ . -..|+.-.-+++.+.+.+++
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a---- 87 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA---- 87 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----
Confidence 44566667889999999999999999999999988766420 000 0 11344445556655554443
Q ss_pred cCccEEEEecCCCCC----------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHH
Q 017148 133 TNVPVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196 (376)
Q Consensus 133 ~~~pv~vKiR~g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~ 196 (376)
+-.+.| +++++. ..+..|+. .. .+.|+|+|-+..... ...+
T Consensus 88 -GA~Fiv--sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~----~A-~~~Gad~vklFPa~~---------------~G~~ 144 (213)
T PRK06552 88 -GAQFIV--SPSFNRETAKICNLYQIPYLPGCMTVTEIV----TA-LEAGSEIVKLFPGST---------------LGPS 144 (213)
T ss_pred -CCCEEE--CCCCCHHHHHHHHHcCCCEECCcCCHHHHH----HH-HHcCCCEEEECCccc---------------CCHH
Confidence 222222 233322 01233332 22 358999999854221 1146
Q ss_pred HHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
+++.++.-++++|++..||| +.+.+.+.++.|+++|.+|..++
T Consensus 145 ~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 145 FIKAIKGPLPQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred HHHHHhhhCCCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHh
Confidence 67777777888999999999 58999999999999999999995
No 196
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.43 E-value=0.01 Score=53.44 Aligned_cols=140 Identities=18% Similarity=0.156 Sum_probs=89.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE-ec
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK-CR 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK-iR 142 (376)
+.|+++.+.-.++..+ -++.+.++|+|+|-+|.-.+ ++.+.++++.+++ .+.++.+- +.
T Consensus 53 ~~~i~~~~~v~~~~~~--~~~~~~~aGad~i~~h~~~~-----------------~~~~~~~i~~~~~-~g~~~~v~~~~ 112 (202)
T cd04726 53 DKIIVADLKTADAGAL--EAEMAFKAGADIVTVLGAAP-----------------LSTIKKAVKAAKK-YGKEVQVDLIG 112 (202)
T ss_pred CCEEEEEEEeccccHH--HHHHHHhcCCCEEEEEeeCC-----------------HHHHHHHHHHHHH-cCCeEEEEEeC
Confidence 6788887766665422 24667789999999985221 2334566676664 35555432 12
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEcc-CccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017148 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~-r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
. .+..+..+ +.+.|+|++.++. ++....| .+...+.+.++.+. +++||++.|||+ +++
T Consensus 113 ~-----~t~~e~~~-----~~~~~~d~v~~~~~~~~~~~~---------~~~~~~~i~~~~~~-~~~~i~~~GGI~-~~~ 171 (202)
T cd04726 113 V-----EDPEKRAK-----LLKLGVDIVILHRGIDAQAAG---------GWWPEDDLKKVKKL-LGVKVAVAGGIT-PDT 171 (202)
T ss_pred C-----CCHHHHHH-----HHHCCCCEEEEcCcccccccC---------CCCCHHHHHHHHhh-cCCCEEEECCcC-HHH
Confidence 1 22333322 2357999999863 3221111 01125666666654 589999999995 999
Q ss_pred HHHHHHcCcCeeEEchHHhhCCc
Q 017148 222 VNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+.++++.|||+|.+|+++...+.
T Consensus 172 i~~~~~~Gad~vvvGsai~~~~d 194 (202)
T cd04726 172 LPEFKKAGADIVIVGRAITGAAD 194 (202)
T ss_pred HHHHHhcCCCEEEEeehhcCCCC
Confidence 99999999999999999876655
No 197
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.42 E-value=0.007 Score=56.40 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=85.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC------------CCC
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG------------VDD 147 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g------------~~~ 147 (376)
.+.|+..+++|+++|-++. ....|||++ +.++.+++.+++||..|==+. -|-
T Consensus 64 ~~~A~~y~~~GA~aISVlT--------e~~~F~Gs~--------~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADa 127 (247)
T PRK13957 64 VQIAKTYETLGASAISVLT--------DQSYFGGSL--------EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASA 127 (247)
T ss_pred HHHHHHHHHCCCcEEEEEc--------CCCcCCCCH--------HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCE
Confidence 3556678889999997752 233467655 345556666788998873221 000
Q ss_pred C------ccHHHHHHHHHHHhhcCCccEE-EEccCccc----cCCC--CCCCCCCCC--cccHHHHHHHHhhCC-CCeEE
Q 017148 148 H------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNGI--SPAENRTIP--PLKYEYYYALLRDFP-DLTFT 211 (376)
Q Consensus 148 ~------~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~----~~g~--~~~~~~~~~--~~~~~~v~~~~~~~~-~ipVi 211 (376)
. -+.+++.++ ...+...|.+.+ .||...-. ..|. -+-+++... ..+.....++....| ++.+|
T Consensus 128 vLLI~~~L~~~~l~~l-~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~I 206 (247)
T PRK13957 128 ILLIVRILTPSQIKSF-LKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKV 206 (247)
T ss_pred EEeEHhhCCHHHHHHH-HHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEE
Confidence 0 011112222 223345566554 35543210 0010 011223222 223444556665555 57789
Q ss_pred EecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 212 LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 212 ~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+-+||.|++|+..+... +|+|.||.+++..+..
T Consensus 207 sESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~ 239 (247)
T PRK13957 207 GESGIESRSDLDKFRKL-VDAALIGTYFMEKKDI 239 (247)
T ss_pred EcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCH
Confidence 99999999999998776 9999999999999885
No 198
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.42 E-value=0.0017 Score=66.38 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=48.8
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE--EchHH
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM--VGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm--iGRa~ 239 (376)
+.++|++.|.+..-... + ....+.++++++++|+++||+ |+|.|.+.++.+++.|||+|- ||.|.
T Consensus 235 Lv~aGvd~i~~D~a~~~----~--------~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~~aGad~v~vgig~gs 301 (479)
T PRK07807 235 LLEAGVDVLVVDTAHGH----Q--------EKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLVEAGADIVKVGVGPGA 301 (479)
T ss_pred HHHhCCCEEEEeccCCc----c--------HHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHHHcCCCEEEECccCCc
Confidence 34689999988643221 1 012678889999888887664 999999999999999999876 44544
Q ss_pred hh
Q 017148 240 YQ 241 (376)
Q Consensus 240 l~ 241 (376)
+.
T Consensus 302 ic 303 (479)
T PRK07807 302 MC 303 (479)
T ss_pred cc
Confidence 43
No 199
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.40 E-value=0.0009 Score=62.12 Aligned_cols=139 Identities=16% Similarity=0.186 Sum_probs=84.6
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---cCccEEEEecCCCCCC---ccHHH
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRIGVDDH---DSYNQ 153 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~~~pv~vKiR~g~~~~---~~~~~ 153 (376)
...++.+.+.|+|+|++-+ + ||...-.+.+.+.+.+.++++. .++|+.+-.-+ .++. +.-.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi-----~------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~ 146 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVI-----N------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPD 146 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEE-----E------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHH
T ss_pred HHHHHHHHHcCCceeeeec-----c------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHH
Confidence 5667778889999999953 1 1211112334444444444443 46787776322 1110 01223
Q ss_pred HHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCe----EEEecCC------CCHHHHH
Q 017148 154 LCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT----FTLNGGI------NTVDEVN 223 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ip----Vi~nGgI------~s~~da~ 223 (376)
.+....+++.+.|+|.|-..-+.. .|.. ....+.+.++.+.. .+| |.++||| .+.+++.
T Consensus 147 ~I~~a~ria~e~GaD~vKt~tg~~--~~~t--------~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~ 215 (236)
T PF01791_consen 147 LIARAARIAAELGADFVKTSTGKP--VGAT--------PEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDAL 215 (236)
T ss_dssp HHHHHHHHHHHTT-SEEEEE-SSS--SCSH--------HHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEecCCcc--cccc--------HHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHH
Confidence 444556677789999999875521 1111 11244556666644 577 9999999 9999999
Q ss_pred HHHHcCc--CeeEEchHHhh
Q 017148 224 AALRKGA--HHVMVGRAAYQ 241 (376)
Q Consensus 224 ~~l~~Ga--d~VmiGRa~l~ 241 (376)
++++.|| -|+..||.++.
T Consensus 216 ~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 216 EFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHHTTHSEEEEEEHHHHHT
T ss_pred HHHHcCChhHHHHHHHHHHc
Confidence 9999999 89999998764
No 200
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.39 E-value=0.00077 Score=62.01 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=50.4
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
-.|...|-+-.++..++ +. -+.+.+.++...++|+|.-|||+|.+++.++.+.|||.|.+|..+..||
T Consensus 151 ~~g~~~iYLEaGSGa~~-----------~v-~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~ 218 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGAYG-----------PV-PEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDP 218 (230)
T ss_dssp HTT-SEEEEE--TTSSS------------H-HHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH
T ss_pred HhCCCEEEEEeCCCCCC-----------Cc-cHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcc
Confidence 46888888876543221 11 1444566666779999999999999999999999999999999999999
Q ss_pred ch
Q 017148 244 WY 245 (376)
Q Consensus 244 ~l 245 (376)
++
T Consensus 219 ~~ 220 (230)
T PF01884_consen 219 DL 220 (230)
T ss_dssp -H
T ss_pred hH
Confidence 84
No 201
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.37 E-value=0.00071 Score=63.07 Aligned_cols=80 Identities=10% Similarity=0.070 Sum_probs=61.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.++|--=+....|. +.+++.+.++.+.. +||..-|||+|.++++++++.|||-|.||+.
T Consensus 36 A~~~~~~ga~~lhivDLd~a~~g~---------~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~ 104 (241)
T PRK14114 36 VEKLIEEGFTLIHVVDLSKAIENS---------VENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK 104 (241)
T ss_pred HHHHHHCCCCEEEEEECCCcccCC---------cchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECch
Confidence 344567999999875322111121 12477888888764 6999999999999999999999999999999
Q ss_pred HhhCCchhhHhh
Q 017148 239 AYQNPWYTLGHV 250 (376)
Q Consensus 239 ~l~~P~lf~~~~ 250 (376)
++.||.++ +++
T Consensus 105 a~~~p~~l-~~~ 115 (241)
T PRK14114 105 VLEDPSFL-KFL 115 (241)
T ss_pred hhCCHHHH-HHH
Confidence 99999874 454
No 202
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.37 E-value=0.0013 Score=59.65 Aligned_cols=75 Identities=17% Similarity=0.080 Sum_probs=54.7
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|+|.+++-...... ....++..++.+.++++...++||++.||| +.+++.++++.|||+|.+|+++..++
T Consensus 122 ~~gaD~v~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~ 195 (212)
T PRK00043 122 AAGADYVGVGPIFPTPTK-----KDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAE 195 (212)
T ss_pred HcCCCEEEECCccCCCCC-----CCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCC
Confidence 589999998743221110 011122336777787776645999999999 78999999999999999999987665
Q ss_pred c
Q 017148 244 W 244 (376)
Q Consensus 244 ~ 244 (376)
.
T Consensus 196 d 196 (212)
T PRK00043 196 D 196 (212)
T ss_pred C
Confidence 5
No 203
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=97.34 E-value=0.0021 Score=64.97 Aligned_cols=114 Identities=17% Similarity=0.114 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcc--c
Q 017148 118 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL--K 194 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~--~ 194 (376)
.++-+.+.|..+++.. ..+|+||+-.+.. +.. + +.-..++++|.|+|.|-.. |++-+.+..+... -
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~----v~~-i---aagvakA~AD~I~IdG~~G---GTGAsP~~~~~~~GiP 354 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHG----VGT-I---AAGVAKAGADVITIDGADG---GTGASPLTSIDHAGIP 354 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccc----hHH-H---HhhhhhccCCEEEEcCCCC---cCCCCcHhHhhcCCch
Confidence 3678888999998875 4579999876422 111 1 1112379999999987532 2211111111110 1
Q ss_pred HHH----HHHHHhhC---CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 195 YEY----YYALLRDF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 195 ~~~----v~~~~~~~---~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|++ +.+..... -.+-|++.|++.|..|+..++..|||.|-+||+.|.-
T Consensus 355 ~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia 409 (485)
T COG0069 355 WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVA 409 (485)
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHH
Confidence 331 12222221 1478999999999999999999999999999998754
No 204
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.32 E-value=0.0069 Score=58.77 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=92.3
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecC------------CC
Q 017148 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRI------------GV 145 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~------------g~ 145 (376)
-.+.|+.-++.|+++|-+. +....|+|++ +-++.+|+. +++||-.|==+ |-
T Consensus 141 p~~iA~~Ye~~GA~aISVL--------Td~~~F~Gs~--------e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GA 204 (338)
T PLN02460 141 PVEIAQAYEKGGAACLSVL--------TDEKYFQGSF--------ENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGA 204 (338)
T ss_pred HHHHHHHHHhCCCcEEEEe--------cCcCcCCCCH--------HHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCC
Confidence 3456666778899999875 3344567764 345677876 88999888321 21
Q ss_pred CCC------ccHHHHHHHHHHHhhcCCccEE-EEccCcc----ccC-CC--CCCCCCCCCcc--cHHHHHHHHh-----h
Q 017148 146 DDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA----LLN-GI--SPAENRTIPPL--KYEYYYALLR-----D 204 (376)
Q Consensus 146 ~~~------~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~----~~~-g~--~~~~~~~~~~~--~~~~v~~~~~-----~ 204 (376)
|-. -+-.++.. +.+++.+.|.+.+ .||.... ... |. -+-+|+..... +.....++.. .
T Consensus 205 DAVLLIaaiL~~~~L~~-l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~ 283 (338)
T PLN02460 205 DAILLIAAVLPDLDIKY-MLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQ 283 (338)
T ss_pred CcHHHHHHhCCHHHHHH-HHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccc
Confidence 110 01112222 2334556787766 4776531 111 21 12233433322 3444445544 2
Q ss_pred C--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 205 F--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 205 ~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
. .++-+|+-+||.|++|+..+.+.|+|+|.||.+++..|+.
T Consensus 284 i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp 326 (338)
T PLN02460 284 IREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDP 326 (338)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCH
Confidence 2 1566899999999999999999999999999999999885
No 205
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.29 E-value=0.001 Score=62.04 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=58.0
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|+++|||--= | .+ +.+.+.++++.. ++||...|||++ ++++++++.|||.|.+|+.
T Consensus 44 A~~~~~~Ga~~lHvVDL-----g---------~~-n~~~i~~i~~~~-~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~ 106 (253)
T TIGR02129 44 AKLYKDDGVKGCHVIML-----G---------PN-NDDAAKEALHAY-PGGLQVGGGIND-TNAQEWLDEGASHVIVTSW 106 (253)
T ss_pred HHHHHHcCCCEEEEEEC-----C---------CC-cHHHHHHHHHhC-CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcH
Confidence 34566899999987531 2 12 478888888874 899999999998 9999999999999999999
Q ss_pred HhhC----Cchh
Q 017148 239 AYQN----PWYT 246 (376)
Q Consensus 239 ~l~~----P~lf 246 (376)
++.| |.++
T Consensus 107 av~~~~i~~~~~ 118 (253)
T TIGR02129 107 LFTKGKFDLKRL 118 (253)
T ss_pred HHhCCCCCHHHH
Confidence 9998 5554
No 206
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.28 E-value=0.0018 Score=57.54 Aligned_cols=74 Identities=19% Similarity=0.074 Sum_probs=54.2
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|+|.++.......+.. ...+..++.+.++++. .++||++.||| +.+++.++++.|+|+|.+|++++.++
T Consensus 113 ~~g~d~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~~ 185 (196)
T cd00564 113 ELGADYVGFGPVFPTPTKPG-----AGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGAD 185 (196)
T ss_pred hcCCCEEEECCccCCCCCCC-----CCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhcCC
Confidence 57999999875532111100 0023347777777664 58999999999 57999999999999999999998766
Q ss_pred c
Q 017148 244 W 244 (376)
Q Consensus 244 ~ 244 (376)
.
T Consensus 186 ~ 186 (196)
T cd00564 186 D 186 (196)
T ss_pred C
Confidence 5
No 207
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.28 E-value=0.0048 Score=65.64 Aligned_cols=150 Identities=21% Similarity=0.197 Sum_probs=91.9
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC------------CCC
Q 017148 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVD 146 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~------------g~~ 146 (376)
-.+.|+..++.|+++|-+. +....|||++ +-++.+++.+++||..|==+ |-|
T Consensus 72 ~~~~a~~y~~~GA~aiSVl--------Te~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GAD 135 (695)
T PRK13802 72 PAALAREYEQGGASAISVL--------TEGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGAD 135 (695)
T ss_pred HHHHHHHHHHcCCcEEEEe--------cCcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCC
Confidence 3455666788899999885 2344577765 34556677788999887321 111
Q ss_pred CC------ccHHHHHHHHHHHhhcCCccEE-EEccCccc----cCCC--CCCCCCCCCc--ccHHHHHHHHhhCC-CCeE
Q 017148 147 DH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LNGI--SPAENRTIPP--LKYEYYYALLRDFP-DLTF 210 (376)
Q Consensus 147 ~~------~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~----~~g~--~~~~~~~~~~--~~~~~v~~~~~~~~-~ipV 210 (376)
-. -+-+++.+ +...+.+.|.+.| .||...-. ..|. -+-+++.+.. .+.....++....| ++.+
T Consensus 136 avLLI~~~L~~~~l~~-l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~ 214 (695)
T PRK13802 136 LVLLIVAALDDAQLKH-LLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIK 214 (695)
T ss_pred EeehhHhhcCHHHHHH-HHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEE
Confidence 10 00112222 2234456777766 47755311 1110 1122333332 23444455555554 5778
Q ss_pred EEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 211 TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
|+-+||.+++|+..+.+.|+|+|.||.+++..|+.
T Consensus 215 VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp 249 (695)
T PRK13802 215 VAESGVFGAVEVEDYARAGADAVLVGEGVATADDH 249 (695)
T ss_pred EEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCH
Confidence 99999999999999999999999999999999884
No 208
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.27 E-value=0.002 Score=57.78 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=53.7
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|++.+..-.. .+. .....++..++.+.++++..+++||++.||| +.+++.+++++|+|+|.+|++++...
T Consensus 114 ~~g~dyi~~~~v~~--t~~---k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~~ 187 (196)
T TIGR00693 114 AEGADYIGFGPIFP--TPT---KKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQAA 187 (196)
T ss_pred HcCCCEEEECCccC--CCC---CCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCCC
Confidence 58999998753211 110 0011123347777777766557999999999 69999999999999999999998654
Q ss_pred c
Q 017148 244 W 244 (376)
Q Consensus 244 ~ 244 (376)
.
T Consensus 188 d 188 (196)
T TIGR00693 188 D 188 (196)
T ss_pred C
Confidence 4
No 209
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.27 E-value=0.053 Score=51.94 Aligned_cols=206 Identities=11% Similarity=0.040 Sum_probs=121.2
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEeccee-e-cccccccc---hhhhhhc-----cCCCCCCEEEEe---cCCC
Q 017148 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLA-A-ETIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSN 75 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~-~-~~~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~ 75 (376)
+..+++| ++-|..-.+++...| ...++|-... + ..+...+- ...+++. ....+.|+++-+ +| +
T Consensus 16 ~~~l~~p--~~~Da~SAri~e~~G-f~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG-~ 91 (292)
T PRK11320 16 EKPLQIV--GTINAYHALLAERAG-FKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFG-G 91 (292)
T ss_pred CCcEEec--CCCCHHHHHHHHHcC-CCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCC-C
Confidence 3455555 556666666666666 6666544322 2 22222221 1111111 123467888876 35 8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHH
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~ 154 (376)
+....+.++.+.++|+.+|.|-=... +| +.|..++.-+-.++...+-|+++++.. +.++.|=-|...-....+++.
T Consensus 92 ~~~v~r~V~~~~~aGaagi~IEDq~~-pK--~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deA 168 (292)
T PRK11320 92 AFNIARTVKSMIKAGAAAVHIEDQVG-AK--RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAA 168 (292)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCC-cc--ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHH
Confidence 99999999999999999999954332 22 234333433446666666666666543 556666666532222346677
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---cCCCCHHHHHHHHHcCcC
Q 017148 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAH 231 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---GgI~s~~da~~~l~~Gad 231 (376)
++. ++...++|+|.|-+++-+. .+.+.++.++. +.|+++| ++-.-.-+.+++-+.|+.
T Consensus 169 I~R-a~aY~eAGAD~ifi~~~~~-----------------~~~i~~~~~~~-~~Pl~~n~~~~~~~p~~s~~~L~~lGv~ 229 (292)
T PRK11320 169 IER-AQAYVEAGADMIFPEAMTE-----------------LEMYRRFADAV-KVPILANITEFGATPLFTTEELASAGVA 229 (292)
T ss_pred HHH-HHHHHHcCCCEEEecCCCC-----------------HHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence 766 3456689999999997321 45566777665 6788443 332111234455557999
Q ss_pred eeEEchHHh
Q 017148 232 HVMVGRAAY 240 (376)
Q Consensus 232 ~VmiGRa~l 240 (376)
.|..|-.++
T Consensus 230 ~v~~~~~~~ 238 (292)
T PRK11320 230 MVLYPLSAF 238 (292)
T ss_pred EEEEChHHH
Confidence 999987654
No 210
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.26 E-value=0.031 Score=53.34 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec--CCCCHHHHHHHHH
Q 017148 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALR 227 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG--gI~s~~da~~~l~ 227 (376)
+.++..+++ ++.|+|+|.+.-++..-... ..+.++++.+.++.+.. ++|+++-| || +.+++.++++
T Consensus 154 ~~eea~~f~----~~tgvD~Lavs~Gt~hg~~~------~~~~l~~e~L~~i~~~~-~iPlv~hGgSGi-~~e~i~~~i~ 221 (282)
T TIGR01859 154 DPDEAEQFV----KETGVDYLAAAIGTSHGKYK------GEPGLDFERLKEIKELT-NIPLVLHGASGI-PEEQIKKAIK 221 (282)
T ss_pred CHHHHHHHH----HHHCcCEEeeccCccccccC------CCCccCHHHHHHHHHHh-CCCEEEECCCCC-CHHHHHHHHH
Confidence 455654443 34799999987555321111 12456688898888765 89999999 99 5678999999
Q ss_pred cCcCeeEEchHHh
Q 017148 228 KGAHHVMVGRAAY 240 (376)
Q Consensus 228 ~Gad~VmiGRa~l 240 (376)
.|++.|-+++.+.
T Consensus 222 ~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 222 LGIAKINIDTDCR 234 (282)
T ss_pred cCCCEEEECcHHH
Confidence 9999999999986
No 211
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.26 E-value=0.052 Score=52.04 Aligned_cols=207 Identities=9% Similarity=0.061 Sum_probs=119.7
Q ss_pred CcEEEccCCCCChHHHHHHHHHhCCCcEEEe-cceeecc-cccccc---hhhhhhc-----cCCCCCCEEEEe---cCCC
Q 017148 9 PWFSVAPMMDWTDNHYRTLARLISKHAWLYT-EMLAAET-IIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSN 75 (376)
Q Consensus 9 nri~lAPM~~~td~~~r~~~~~~Gg~gl~~t-e~v~~~~-~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~ 75 (376)
+..+++| ++-|..-.+++.+.| ...+++ ....+.. +...+- ...+++. ....+.|+++-+ +|+.
T Consensus 15 ~~~l~~p--~v~Da~SArl~e~aG-f~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~ 91 (294)
T TIGR02319 15 PEILVVP--SAYDALSAKVIQQAG-FPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNA 91 (294)
T ss_pred CCcEEee--cCcCHHHHHHHHHcC-CCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCc
Confidence 3345555 666777777777776 666664 4333221 222221 1111111 233567888877 4566
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHH
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~ 154 (376)
++ ..+.++.+.++|+.+|.|-=... +| +.|.+++.-+-..+...+-|++++++. +.++.|=-|........+++.
T Consensus 92 ~~-v~r~V~~~~~aGaagi~IEDq~~-pK--~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~dea 167 (294)
T TIGR02319 92 MS-VWRATREFERVGIVGYHLEDQVN-PK--RCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEA 167 (294)
T ss_pred HH-HHHHHHHHHHcCCeEEEEECCCC-cc--ccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHH
Confidence 66 67889999999999999964332 22 334444443445555555555555543 344555556532222346677
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE---EEecCCCCHHHHHHHHHcCcC
Q 017148 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF---TLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV---i~nGgI~s~~da~~~l~~Gad 231 (376)
++. ++...++|+|.|-+++-. ..+.+.++.++. +.|+ +..|+-.-.-++.++-+.|++
T Consensus 168 I~R-a~aY~eAGAD~ifi~~~~-----------------~~~ei~~~~~~~-~~P~~~nv~~~~~~p~~s~~eL~~lG~~ 228 (294)
T TIGR02319 168 IRR-SREYVAAGADCIFLEAML-----------------DVEEMKRVRDEI-DAPLLANMVEGGKTPWLTTKELESIGYN 228 (294)
T ss_pred HHH-HHHHHHhCCCEEEecCCC-----------------CHHHHHHHHHhc-CCCeeEEEEecCCCCCCCHHHHHHcCCc
Confidence 766 345667999999998622 145566777765 5676 334433222345566667999
Q ss_pred eeEEchHHhh
Q 017148 232 HVMVGRAAYQ 241 (376)
Q Consensus 232 ~VmiGRa~l~ 241 (376)
.|..|-.++.
T Consensus 229 ~v~~~~~~~~ 238 (294)
T TIGR02319 229 LAIYPLSGWM 238 (294)
T ss_pred EEEEcHHHHH
Confidence 9999876644
No 212
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.20 E-value=0.0083 Score=54.27 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=95.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----cc---CCCCccccccCCHHHHHHHHHHHhcccCc
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VA---GHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v~---r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
..+++.=|.+.++++..+.++.+.+.|+..|||.+..|... .. ..-..|+.-.-+++.+.+.+++ +-
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a-----GA 77 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA-----GS 77 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc-----CC
Confidence 34566667889999999999999999999999998876421 00 0111244444455555554443 12
Q ss_pred cEEEEecCCCCC----------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017148 136 PVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 136 pv~vKiR~g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
.+.| +++++. ..+..|+.. . .++|++.|-+.+... .+| ..+++
T Consensus 78 ~Fiv--SP~~~~~vi~~a~~~~i~~iPG~~TptEi~~----A-~~~Ga~~vK~FPa~~-~GG-------------~~yik 136 (201)
T PRK06015 78 RFIV--SPGTTQELLAAANDSDVPLLPGAATPSEVMA----L-REEGYTVLKFFPAEQ-AGG-------------AAFLK 136 (201)
T ss_pred CEEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHH----H-HHCCCCEEEECCchh-hCC-------------HHHHH
Confidence 2222 222221 012223322 2 258888888876432 111 35677
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
.+..-+|++|++..||| +.+.+.+.++.|+..+..|..+..+.
T Consensus 137 al~~plp~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~~~~ 179 (201)
T PRK06015 137 ALSSPLAGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVAPKE 179 (201)
T ss_pred HHHhhCCCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhCCch
Confidence 77777889999999999 66899999998777666666655333
No 213
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.19 E-value=0.011 Score=59.88 Aligned_cols=127 Identities=14% Similarity=0.123 Sum_probs=80.5
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
-++.+.++|+|+|-++...+ ...+.++++.+++ .+.++.+.+ ++.. ++.+.+ . .
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~-----------------~~~~~~~i~~a~~-~G~~~~~g~-~s~~--t~~e~~----~-~ 126 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLAD-----------------DSTIEDAVRAARK-YGVRLMADL-INVP--DPVKRA----V-E 126 (430)
T ss_pred HHHHHHHcCCCEEEEecCCC-----------------hHHHHHHHHHHHH-cCCEEEEEe-cCCC--CHHHHH----H-H
Confidence 44567788999988763111 1123456666665 466655532 1111 122221 2 2
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.+.|+|+|.++.+..... ..+..++.++++++.. ++||++.||| +.+.+.++++.|||+|.+||+++.
T Consensus 127 a~~~GaD~I~~~pg~~~~~---------~~~~~~~~l~~l~~~~-~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 127 LEELGVDYINVHVGIDQQM---------LGKDPLELLKEVSEEV-SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHhcCCCEEEEEeccchhh---------cCCChHHHHHHHHhhC-CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcC
Confidence 3468999998875431100 0112256777777654 7999999999 789999999999999999999987
Q ss_pred CCch
Q 017148 242 NPWY 245 (376)
Q Consensus 242 ~P~l 245 (376)
.+.+
T Consensus 196 ~~d~ 199 (430)
T PRK07028 196 SADV 199 (430)
T ss_pred CCCH
Confidence 7664
No 214
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.18 E-value=0.0019 Score=60.37 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=60.3
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.+++.|+..++|--=.... |. +.+.+.+.++.+.. .+||...|||+|.++++++++.|||-|.+|+.+
T Consensus 38 ~~~~~~g~~~lhivDLd~a~-g~---------~~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a 106 (243)
T TIGR01919 38 KWWEQGGAEWIHLVDLDAAF-GG---------GNNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGTAA 106 (243)
T ss_pred HHHHhCCCeEEEEEECCCCC-CC---------cchHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 34467899888875322111 21 12377888888875 699999999999999999999999999999999
Q ss_pred hhCCchhh
Q 017148 240 YQNPWYTL 247 (376)
Q Consensus 240 l~~P~lf~ 247 (376)
+.||.++.
T Consensus 107 ~~~p~~~~ 114 (243)
T TIGR01919 107 LENPWWAA 114 (243)
T ss_pred hCCHHHHH
Confidence 99999854
No 215
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.18 E-value=0.0057 Score=56.21 Aligned_cols=155 Identities=10% Similarity=0.047 Sum_probs=101.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcccc---------CC---CCccccccCCHHHHHHHHHHHhc
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVA---------GH---GCFGVSLMLDPKFVGEAMSVIAA 131 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~---------r~---g~yG~~l~~~~~~~~eiv~~v~~ 131 (376)
..+++.=+.+.++++..+.++.+.+.|+..|||.+-.|...-. .+ -..|+.-.-+++.+.+.+++
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a--- 90 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL--- 90 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc---
Confidence 4456666788999999999999999999999998876642100 00 01344444455555544433
Q ss_pred ccCccEEEEecCCCCC----------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccH
Q 017148 132 NTNVPVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY 195 (376)
Q Consensus 132 ~~~~pv~vKiR~g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~ 195 (376)
+-.+.| +++++. ..+..|+.. . .++|++.|-+.+... .| .
T Consensus 91 --GA~FiV--sP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~----A-~~~Ga~~vKlFPA~~--~G-------------~ 146 (222)
T PRK07114 91 --GANFIV--TPLFNPDIAKVCNRRKVPYSPGCGSLSEIGY----A-EELGCEIVKLFPGSV--YG-------------P 146 (222)
T ss_pred --CCCEEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHH----H-HHCCCCEEEECcccc--cC-------------H
Confidence 222222 233322 012223322 2 258888888876331 12 4
Q ss_pred HHHHHHHhhCCCCeEEEecCCCC-HHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 196 EYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s-~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+++.+..-+|+++++..|||.- .+++.+.++.|+.+|.+|+.+..+.++
T Consensus 147 ~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~~~ 197 (222)
T PRK07114 147 GFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKEAL 197 (222)
T ss_pred HHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCcccc
Confidence 56677776678999999999984 589999999999999999998866654
No 216
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.0045 Score=56.34 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=84.4
Q ss_pred CCCHHH-HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017148 73 GSNLDN-LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 73 g~~~~~-~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
|.++.. =+.-++.+.+.|+|.||+=. + +|.-.-.+.+.+.+-+++|++.++-++.+|.-+-.... +-
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVi-----n------ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L-t~ 139 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVI-----N------IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLL-TD 139 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeee-----e------HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEecccc-CH
Confidence 444433 23334566778999999832 1 24444567899999999999988655667765532211 12
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
++. .....+..++|+|+|--+.+.. ..| + . .-+..++.+.+. ..+.|=++|||+|.+|+..+++.|+.
T Consensus 140 ee~-~~A~~i~~~aGAdFVKTSTGf~-~~g---A---T--~edv~lM~~~vg--~~vgvKaSGGIrt~eda~~~i~aga~ 207 (228)
T COG0274 140 EEK-RKACEIAIEAGADFVKTSTGFS-AGG---A---T--VEDVKLMKETVG--GRVGVKASGGIRTAEDAKAMIEAGAT 207 (228)
T ss_pred HHH-HHHHHHHHHhCCCEEEcCCCCC-CCC---C---C--HHHHHHHHHHhc--cCceeeccCCcCCHHHHHHHHHHhHH
Confidence 232 2335566789999998664432 111 1 0 111223333332 26889999999999999999998854
Q ss_pred eeE
Q 017148 232 HVM 234 (376)
Q Consensus 232 ~Vm 234 (376)
-+.
T Consensus 208 RiG 210 (228)
T COG0274 208 RIG 210 (228)
T ss_pred Hhc
Confidence 433
No 217
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.16 E-value=0.0054 Score=57.70 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=90.7
Q ss_pred EEEEecC--CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCC-----Ccccccc--CCHHHHHHHHHHHh-cccCcc
Q 017148 67 IVLQIGG--SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHG-----CFGVSLM--LDPKFVGEAMSVIA-ANTNVP 136 (376)
Q Consensus 67 ~~vQL~g--~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g-----~yG~~l~--~~~~~~~eiv~~v~-~~~~~p 136 (376)
++.=|.. .+.+.+.++++.+.+.|+|.|||.+ |...-.-.| ..=-+|. -+.+.+.++++.++ +..++|
T Consensus 12 li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGi--PfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~p 89 (259)
T PF00290_consen 12 LIPYITAGYPDLETTLEILKALEEAGADIIEIGI--PFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIP 89 (259)
T ss_dssp EEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE----SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence 4444443 4678999999999999999999964 322111000 0000010 25678889999999 777888
Q ss_pred EEEEecC------CCCCC----------------ccHHHHHHHHHHHhhcCCccEEEEc-cCcc----------------
Q 017148 137 VSVKCRI------GVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIH-SRKA---------------- 177 (376)
Q Consensus 137 v~vKiR~------g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~---------------- 177 (376)
+.+=.=. |++.. -.+++.. .+...+.+.|++.|-+- ..+.
T Consensus 90 ivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~-~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY 168 (259)
T PF00290_consen 90 IVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESE-ELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIY 168 (259)
T ss_dssp EEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHH-HHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEE
T ss_pred EEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHH-HHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEE
Confidence 8663211 11000 0011111 11223344555555431 1110
Q ss_pred --ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 178 --LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 178 --~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
...|.++... .++..-.+.+..+++ ..++||..-=||++++++.++. .+||||.||++++.
T Consensus 169 ~vs~~GvTG~~~-~~~~~l~~~i~~ik~-~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 169 LVSRMGVTGSRT-ELPDELKEFIKRIKK-HTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp EESSSSSSSTTS-SCHHHHHHHHHHHHH-TTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred eeccCCCCCCcc-cchHHHHHHHHHHHh-hcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 0123322211 111111345555554 4599999999999999999998 79999999999754
No 218
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.011 Score=53.55 Aligned_cols=144 Identities=19% Similarity=0.125 Sum_probs=90.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.+++++.-+-..|.-.+ -++++.++|+|.+-+-+..|..+ +...++..++ .+.-+.+-+-
T Consensus 55 pd~~IvAD~Kt~D~G~~--e~~ma~~aGAd~~tV~g~A~~~T-----------------I~~~i~~A~~-~~~~v~iDl~ 114 (217)
T COG0269 55 PDKIIVADLKTADAGAI--EARMAFEAGADWVTVLGAADDAT-----------------IKKAIKVAKE-YGKEVQIDLI 114 (217)
T ss_pred CCCeEEeeeeecchhHH--HHHHHHHcCCCEEEEEecCCHHH-----------------HHHHHHHHHH-cCCeEEEEee
Confidence 45567666654444332 35778899999998866544432 2333444332 3455555544
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEcc-CccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHH
Q 017148 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVD 220 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~-r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~ 220 (376)
-.|+ .++. .+.+++.|+|.+.+|- +.....|.+.. ++.+..+++... ...|-..||| +++
T Consensus 115 ~~~~----~~~~----~~~l~~~gvd~~~~H~g~D~q~~G~~~~---------~~~l~~ik~~~~~g~~vAVaGGI-~~~ 176 (217)
T COG0269 115 GVWD----PEQR----AKWLKELGVDQVILHRGRDAQAAGKSWG---------EDDLEKIKKLSDLGAKVAVAGGI-TPE 176 (217)
T ss_pred cCCC----HHHH----HHHHHHhCCCEEEEEecccHhhcCCCcc---------HHHHHHHHHhhccCceEEEecCC-CHH
Confidence 3332 3332 2334569999999994 44433453321 455555554432 3789999999 899
Q ss_pred HHHHHHHcCcCeeEEchHHhhCCc
Q 017148 221 EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 221 da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++..+...|+|.|.+||++-....
T Consensus 177 ~i~~~~~~~~~ivIvGraIt~a~d 200 (217)
T COG0269 177 DIPLFKGIGADIVIVGRAITGAKD 200 (217)
T ss_pred HHHHHhcCCCCEEEECchhcCCCC
Confidence 999999999999999999875554
No 219
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.12 E-value=0.0032 Score=57.02 Aligned_cols=149 Identities=19% Similarity=0.310 Sum_probs=86.8
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCCE--EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017148 67 IVLQIGGSNLDNLAKATELANAYNYDE--INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 67 ~~vQL~g~~~~~~~~aa~~~~~~G~d~--IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
+...|...+...+.+..+.++++|+|. +|+-=|.=+++. .|| -++++++++.+++|+.|-+=.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~----~~g----------~~~i~~i~~~~~~~~DvHLMv- 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL----TFG----------PDIIKAIRKITDLPLDVHLMV- 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-----B-----------HHHHHHHHTTSSSEEEEEEES-
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc----cCC----------HHHHHHHhhcCCCcEEEEeee-
Confidence 567788888889999999999999986 455445433322 144 356777888888888887643
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccCccc----------cC----------------------------------
Q 017148 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL----------LN---------------------------------- 180 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~----------~~---------------------------------- 180 (376)
.+...+ ++ . +.++|++.|++|..... ..
T Consensus 67 -~~P~~~---i~---~-~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~P 138 (201)
T PF00834_consen 67 -ENPERY---IE---E-FAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEP 138 (201)
T ss_dssp -SSGGGH---HH---H-HHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-T
T ss_pred -ccHHHH---HH---H-HHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecC
Confidence 332222 21 1 22467777777743210 00
Q ss_pred CCCCCCCCCCCcccHHHHHHH---Hhh-CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 181 GISPAENRTIPPLKYEYYYAL---LRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 181 g~~~~~~~~~~~~~~~~v~~~---~~~-~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|.++ ...-+..++-++++ .++ ..++.|...||| +.+.+..+.+.|||.+.+|++++.+
T Consensus 139 G~~G---q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 139 GFGG---QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp TTSS---B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred CCCc---ccccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 1111 00001112333333 222 236899999999 5668888889999999999998754
No 220
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.024 Score=52.82 Aligned_cols=147 Identities=22% Similarity=0.241 Sum_probs=88.9
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC------------CCCCC-
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVDDH- 148 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~------------g~~~~- 148 (376)
.|+.-+++|+++|.+- +....|.|++ +.++.+++.+++||-.|==+ |-|-.
T Consensus 71 ia~~Ye~~GAa~iSVL--------Td~~~F~Gs~--------e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavL 134 (254)
T COG0134 71 IAKAYEEGGAAAISVL--------TDPKYFQGSF--------EDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVL 134 (254)
T ss_pred HHHHHHHhCCeEEEEe--------cCccccCCCH--------HHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHH
Confidence 4555667889998774 2233344433 34566777889999998322 11110
Q ss_pred -----ccHHHHHHHHHHHhhcCCccEEE-EccCccc----cCCC--CCCCCCCCCcc--cHHHHHHHHhhCC-CCeEEEe
Q 017148 149 -----DSYNQLCDFIYKVSSLSPTRHFI-IHSRKAL----LNGI--SPAENRTIPPL--KYEYYYALLRDFP-DLTFTLN 213 (376)
Q Consensus 149 -----~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~~----~~g~--~~~~~~~~~~~--~~~~v~~~~~~~~-~ipVi~n 213 (376)
-+-+++.+ +.....+.|.+.++ ||...-. ..|. -+-+++..... +.+...++....| +..+|.-
T Consensus 135 LI~~~L~~~~l~e-l~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsE 213 (254)
T COG0134 135 LIVAALDDEQLEE-LVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISE 213 (254)
T ss_pred HHHHhcCHHHHHH-HHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEec
Confidence 00111222 23344567877664 6754310 0110 11233333322 2444555555555 4778999
Q ss_pred cCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 214 GGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 214 GgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+||.+++|+..+...|+|++.||.+++.++..
T Consensus 214 SGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~ 245 (254)
T COG0134 214 SGISTPEDVRRLAKAGADAFLVGEALMRADDP 245 (254)
T ss_pred CCCCCHHHHHHHHHcCCCEEEecHHHhcCCCH
Confidence 99999999999999999999999999999986
No 221
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0024 Score=58.88 Aligned_cols=79 Identities=25% Similarity=0.340 Sum_probs=61.7
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+-+++.|+.++|+--=+....| .+.+.+++.++.+.. ++||=.-|||+|.+++++.++.|++-|.+|+.+
T Consensus 38 ~~~~~~Ga~~lHlVDLdgA~~g---------~~~n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 38 KKWSDQGAEWLHLVDLDGAKAG---------GPRNLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHcCCcEEEEeeccccccC---------CcccHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 3456789999987422211111 122367888998875 899999999999999999999999999999999
Q ss_pred hhCCchhhH
Q 017148 240 YQNPWYTLG 248 (376)
Q Consensus 240 l~~P~lf~~ 248 (376)
+.||.++.+
T Consensus 108 v~~p~~v~~ 116 (241)
T COG0106 108 VKNPDLVKE 116 (241)
T ss_pred ecCHHHHHH
Confidence 999998643
No 222
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.08 E-value=0.075 Score=51.03 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCcc--ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC--CCCHHHHHH
Q 017148 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG--INTVDEVNA 224 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg--I~s~~da~~ 224 (376)
.+.++..+++ +.|+|+|.+.-++. .+.+. .++++++.+.++.+...++|+++-|| | +.+++.+
T Consensus 154 t~peea~~f~-----~tgvD~LAv~iG~vHG~y~t~-------~k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~ 220 (293)
T PRK07315 154 APIEDAKAMV-----ETGIDFLAAGIGNIHGPYPEN-------WEGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQE 220 (293)
T ss_pred CCHHHHHHHH-----HcCCCEEeeccccccccCCCC-------CCcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHH
Confidence 3455544432 58999998875443 12211 23567899999988764699999999 8 6688999
Q ss_pred HHHcCcCeeEEchHHhhCCc
Q 017148 225 ALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 225 ~l~~Gad~VmiGRa~l~~P~ 244 (376)
+++.|++.|-+++.+..+|.
T Consensus 221 ~i~~Gi~KiNv~T~i~~~~~ 240 (293)
T PRK07315 221 AIKLGVAKVNVNTECQIAFA 240 (293)
T ss_pred HHHcCCCEEEEccHHHHHHH
Confidence 99999999999999987544
No 223
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.08 E-value=0.12 Score=49.52 Aligned_cols=158 Identities=12% Similarity=0.118 Sum_probs=95.0
Q ss_pred CCCCCEEEEe-cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCcccc---ccCCHHHHHHHHHHHhcc-cCcc
Q 017148 62 PEQHPIVLQI-GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVS---LMLDPKFVGEAMSVIAAN-TNVP 136 (376)
Q Consensus 62 ~~~~p~~vQL-~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~---l~~~~~~~~eiv~~v~~~-~~~p 136 (376)
....|+++-+ .|.++..+.+.++.+.++|+.+|.|-=.+- ++ +.+.+|+. .+-..+...+.++++++. .+.+
T Consensus 76 a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~-pk--~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~ 152 (285)
T TIGR02320 76 VTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLG-LK--KNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTED 152 (285)
T ss_pred hcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCC-Cc--cccccCCCCcccccCHHHHHHHHHHHHHhccCCC
Confidence 3466877665 246889999999999999999999943221 11 22333332 344667777777777665 3333
Q ss_pred EEEEecCC--CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh----CCCCeE
Q 017148 137 VSVKCRIG--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FPDLTF 210 (376)
Q Consensus 137 v~vKiR~g--~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~----~~~ipV 210 (376)
+.|=-|.. +.. ..+++.++. ++.+.++|+|.|-+++... +.+.+.++.++ +|++|+
T Consensus 153 ~~IiARTDa~~~~-~~~~eAi~R-a~ay~eAGAD~ifv~~~~~----------------~~~ei~~~~~~~~~~~p~~pl 214 (285)
T TIGR02320 153 FMIIARVESLILG-KGMEDALKR-AEAYAEAGADGIMIHSRKK----------------DPDEILEFARRFRNHYPRTPL 214 (285)
T ss_pred eEEEEeccccccc-CCHHHHHHH-HHHHHHcCCCEEEecCCCC----------------CHHHHHHHHHHhhhhCCCCCE
Confidence 44434421 111 236666665 4556789999999985211 02223333333 456898
Q ss_pred EEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 211 TLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 211 i~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
+.+.+-...-++.++-+.|+..|..|-.++
T Consensus 215 ~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 215 VIVPTSYYTTPTDEFRDAGISVVIYANHLL 244 (285)
T ss_pred EEecCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence 876532222245666668999999986665
No 224
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.04 E-value=0.003 Score=58.55 Aligned_cols=78 Identities=10% Similarity=0.009 Sum_probs=59.3
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+.+.|++.++|--=.... +. +.+.+.+.++.+.. ..||-.-|||+|.++++++++.|||-|.+|+.
T Consensus 36 a~~~~~~ga~~lhivDLd~a~-~~---------~~n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~ 104 (232)
T PRK13586 36 ASKLYNEGYTRIHVVDLDAAE-GV---------GNNEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTI 104 (232)
T ss_pred HHHHHHCCCCEEEEEECCCcC-CC---------cchHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEEEECch
Confidence 344567999999875322211 21 11367788887743 24999999999999999999999999999999
Q ss_pred HhhCCchhh
Q 017148 239 AYQNPWYTL 247 (376)
Q Consensus 239 ~l~~P~lf~ 247 (376)
++.||.++.
T Consensus 105 a~~~p~~~~ 113 (232)
T PRK13586 105 VFTNFNLFH 113 (232)
T ss_pred hhCCHHHHH
Confidence 999999753
No 225
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.03 E-value=0.0095 Score=61.77 Aligned_cols=135 Identities=9% Similarity=0.095 Sum_probs=86.7
Q ss_pred HHHHHHHHHCCCCEEEecCCC---CCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEE-----------------
Q 017148 80 AKATELANAYNYDEINLNCGC---PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVS----------------- 138 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gc---P~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~----------------- 138 (376)
.+.++.+-++|+|-|-||... |.. -|-++-..+|+++.++.+..-+. +-+-+.
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~~~~------~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~ 410 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYAAEE------YIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTV 410 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChhh------hhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccc
Confidence 345666777899999998531 211 11222456899999999887432 111111
Q ss_pred ----------------EEecCCCCCCc--cHHHHHHHHHHHhhcCCccEEEEccCc--cccCCCCCCCCCCCCcccHHHH
Q 017148 139 ----------------VKCRIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 139 ----------------vKiR~g~~~~~--~~~~~~~~i~~~~e~~Gvd~I~vh~r~--~~~~g~~~~~~~~~~~~~~~~v 198 (376)
|.+. ||.+.. +..++ ++.+++.|+..|.+..-. ....|+ +++++
T Consensus 411 ~~~~~~~~~~~~~~~~v~~~-gg~~~~~~~~~~~----~~~~~~~Gageil~t~id~DGt~~G~-----------d~~l~ 474 (538)
T PLN02617 411 KVTNPGPNGEEYAWYQCTVK-GGREGRPIGAYEL----AKAVEELGAGEILLNCIDCDGQGKGF-----------DIELV 474 (538)
T ss_pred cccccCcCcccceEEEEEEe-cCcccCCCCHHHH----HHHHHhcCCCEEEEeeccccccccCc-----------CHHHH
Confidence 2222 333322 23333 334567999998886432 233332 26777
Q ss_pred HHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEch
Q 017148 199 YALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR 237 (376)
Q Consensus 199 ~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGR 237 (376)
.++.+. +++|||++||+.+++|+.++++ +|+|+++.|.
T Consensus 475 ~~v~~~-~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~ 513 (538)
T PLN02617 475 KLVSDA-VTIPVIASSGAGTPEHFSDVFSKTNASAALAAG 513 (538)
T ss_pred HHHHhh-CCCCEEEECCCCCHHHHHHHHhcCCccEEEEEe
Confidence 777765 5999999999999999999998 8899999884
No 226
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.02 E-value=0.0045 Score=56.43 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=56.2
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++.|+|+|.+-.-..... +. .. ++..++.++.+.+. ..+|+++-||| +++.+.+++++|||+|.+-|+++..
T Consensus 121 ~~~g~DYv~~GpifpT~t----K~-~~-~~~G~~~l~~~~~~-~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 121 EELGADYVGLGPIFPTST----KP-DA-PPLGLEGLREIREL-VNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred HhcCCCEEEECCcCCCCC----CC-CC-CccCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhcC
Confidence 468899999854321110 11 11 45557878776654 46999999999 8999999999999999999999987
Q ss_pred Cch
Q 017148 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
+..
T Consensus 193 ~d~ 195 (211)
T COG0352 193 ADP 195 (211)
T ss_pred CCH
Confidence 775
No 227
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.01 E-value=0.031 Score=51.08 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=37.3
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhh
Q 017148 207 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL 247 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~ 247 (376)
..|+|.-|||+|++++.++.+.|||.+..|..+..+|.-+.
T Consensus 191 ~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~ 231 (240)
T COG1646 191 DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKAL 231 (240)
T ss_pred cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHHH
Confidence 35999999999999999999999999999999999997643
No 228
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=96.99 E-value=0.0014 Score=57.10 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=66.6
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+-|++++++|+-.|-.----|.+ .|+.+ |-+-|.||..+.+|.++| .+||..|.|+|- +.| ++
T Consensus 25 eQAkIAE~AGA~AVMaLervPad--iR~~G-GVaRMsDP~~I~eI~~aV----sIPVMAK~RIGH-----fvE-----Aq 87 (208)
T PF01680_consen 25 EQAKIAEEAGAVAVMALERVPAD--IRAAG-GVARMSDPKMIKEIMDAV----SIPVMAKVRIGH-----FVE-----AQ 87 (208)
T ss_dssp HHHHHHHHHT-SEEEE-SS-HHH--HHHTT-S---S--HHHHHHHHHH-----SSEEEEEEETT------HHH-----HH
T ss_pred HHHHHHHHhCCeEEEEeccCCHh--HHhcC-CccccCCHHHHHHHHHhe----Eeceeeccccce-----eeh-----hh
Confidence 46888999998777665445554 35555 888999999988887775 699999999972 222 67
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHH-HhhCCCCeEEEecCCCCHHHHHHHHHcCcCee
Q 017148 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL-LRDFPDLTFTLNGGINTVDEVNAALRKGAHHV 233 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~V 233 (376)
+++..|+|+|.=|-- ++++|..+ -+ +..+ ++|++. |-++.-.+.+-+.-||.++
T Consensus 88 iLealgVD~IDESEV------LTpAD~~~----------HI~K~~F-~vPFVc--GarnLGEALRRI~EGAaMI 142 (208)
T PF01680_consen 88 ILEALGVDYIDESEV------LTPADEEN----------HIDKHNF-KVPFVC--GARNLGEALRRIAEGAAMI 142 (208)
T ss_dssp HHHHTT-SEEEEETT------S--S-SS--------------GGG--SS-EEE--EESSHHHHHHHHHTT-SEE
T ss_pred hHHHhCCceeccccc------cccccccc----------cccchhC-CCCeEe--cCCCHHHHHhhHHhhhhhh
Confidence 889999999985531 12233211 11 1234 788764 3446666666666677654
No 229
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.97 E-value=0.01 Score=53.47 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=85.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccc--------cCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017148 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKV--------AGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v--------~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.+++.=|.+.++++..+.++.+.+.|+..|||.+-.|...- ...-..|+.-.-+++.+.+.+++ +-.
T Consensus 8 ~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a-----GA~ 82 (196)
T PF01081_consen 8 NKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA-----GAQ 82 (196)
T ss_dssp HSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH-----T-S
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc-----CCC
Confidence 35666678889999999999999999999999886553100 00001122222333333333222 111
Q ss_pred EEEEecCCCCCC----------------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHH
Q 017148 137 VSVKCRIGVDDH----------------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 200 (376)
Q Consensus 137 v~vKiR~g~~~~----------------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~ 200 (376)
+.| +++++.. .+..|+. +. .++|++.+-+.+-... +| ..+++.
T Consensus 83 Fiv--SP~~~~~v~~~~~~~~i~~iPG~~TptEi~----~A-~~~G~~~vK~FPA~~~-GG-------------~~~ik~ 141 (196)
T PF01081_consen 83 FIV--SPGFDPEVIEYAREYGIPYIPGVMTPTEIM----QA-LEAGADIVKLFPAGAL-GG-------------PSYIKA 141 (196)
T ss_dssp EEE--ESS--HHHHHHHHHHTSEEEEEESSHHHHH----HH-HHTT-SEEEETTTTTT-TH-------------HHHHHH
T ss_pred EEE--CCCCCHHHHHHHHHcCCcccCCcCCHHHHH----HH-HHCCCCEEEEecchhc-Cc-------------HHHHHH
Confidence 111 1222110 0111221 11 2456666665543321 11 467778
Q ss_pred HHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 201 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 201 ~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+..-+++++++..|||. .+.+.+.++.|+.+|.+|+.+..+.++
T Consensus 142 l~~p~p~~~~~ptGGV~-~~N~~~~l~ag~~~vg~Gs~L~~~~~i 185 (196)
T PF01081_consen 142 LRGPFPDLPFMPTGGVN-PDNLAEYLKAGAVAVGGGSWLFPKDLI 185 (196)
T ss_dssp HHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSHHHH
T ss_pred HhccCCCCeEEEcCCCC-HHHHHHHHhCCCEEEEECchhcCHHHH
Confidence 87778899999999995 589999999999999999988766654
No 230
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.96 E-value=0.0035 Score=58.85 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=58.3
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++++||--=.+ |. +.+.+.+.++++ . ++||-.-|||++ ++++++++.|||-|.||+.
T Consensus 49 A~~~~~~Ga~~lHvVDLdg---g~---------~~n~~~i~~i~~-~-~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~ 113 (262)
T PLN02446 49 AEMYKRDGLTGGHVIMLGA---DD---------ASLAAALEALRA-Y-PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSY 113 (262)
T ss_pred HHHHHHCCCCEEEEEECCC---CC---------cccHHHHHHHHh-C-CCCEEEeCCccH-HHHHHHHHcCCCEEEEchH
Confidence 4456689999998752111 11 123677888887 4 799999999996 9999999999999999999
Q ss_pred HhhC----Cchhh
Q 017148 239 AYQN----PWYTL 247 (376)
Q Consensus 239 ~l~~----P~lf~ 247 (376)
++.| |.++.
T Consensus 114 Av~~~~~~p~~v~ 126 (262)
T PLN02446 114 VFRDGQIDLERLK 126 (262)
T ss_pred HHhCCCCCHHHHH
Confidence 9999 98753
No 231
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.96 E-value=0.0037 Score=57.97 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=60.6
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|++.++|---.+.. |. +.+.+.+.++.+.. .+||..-|||++.+|+++++..||+-|.+|+.
T Consensus 41 a~~~~~~g~~~l~i~DLd~~~-~~---------~~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viigt~ 109 (233)
T cd04723 41 ARAYKELGFRGLYIADLDAIM-GR---------GDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVGTE 109 (233)
T ss_pred HHHHHHCCCCEEEEEeCcccc-CC---------CccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEcce
Confidence 344567899999985433221 21 12367788888764 79999999999999999999999999999999
Q ss_pred HhhCCchhhH
Q 017148 239 AYQNPWYTLG 248 (376)
Q Consensus 239 ~l~~P~lf~~ 248 (376)
++.| .++.+
T Consensus 110 ~~~~-~~~~~ 118 (233)
T cd04723 110 TLPS-DDDED 118 (233)
T ss_pred eccc-hHHHH
Confidence 9999 87543
No 232
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.95 E-value=0.016 Score=54.29 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHH
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
+.-..-++.+.+.|+|.||+=+ + +|.-+..+.+.+.+-+++|++.++-++.+|+-+-.....+- +.+.
T Consensus 83 ~~K~~Ea~~Ai~~GAdEiD~Vi-----n------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~e-e~i~ 150 (257)
T PRK05283 83 DIALAETRAAIAYGADEVDVVF-----P------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDE-ALIR 150 (257)
T ss_pred HHHHHHHHHHHHcCCCEEeeec-----c------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCH-HHHH
Confidence 3333344556677999999832 1 35555567788888888888765423455554421111111 1122
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC---CCCeEEEecCCCCHHHHHHHHHcCcC
Q 017148 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---PDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~---~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
.+.+++.++|+|+|--+.+... .| + .+-+...+.+.+++. .++-|=++|||+|.+++.++++.|.+
T Consensus 151 ~a~~~a~~aGADFVKTSTGf~~-~g---A-----t~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~ 219 (257)
T PRK05283 151 KASEIAIKAGADFIKTSTGKVP-VN---A-----TLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE 219 (257)
T ss_pred HHHHHHHHhCCCEEEcCCCCCC-CC---C-----CHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH
Confidence 2345666899999886644210 11 1 111133333443321 25788999999999999999986544
No 233
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.91 E-value=0.016 Score=52.88 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=89.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc-----cc---CCCCccccccCCHHHHHHHHHHHhcccCc
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPK-----VA---GHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~-----v~---r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
..+++.=+.+.++++..+.++.+.+.|++.|||.+-.|... .. ..-.-|+...-+++.+...+++ +-
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~a-----GA 88 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEA-----GA 88 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHc-----CC
Confidence 45666668899999999999999999999999987655310 00 0001233322333333222221 11
Q ss_pred cEEEEecCCCCC----------------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017148 136 PVSVKCRIGVDD----------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 136 pv~vKiR~g~~~----------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
.+.+ .++++. ..+..|+ .. +.+.|++.+.+...... .| ..+++
T Consensus 89 ~Fiv--sP~~~~~vi~~a~~~~i~~iPG~~TptEi----~~-a~~~Ga~~vKlFPa~~~-gg-------------~~~lk 147 (212)
T PRK05718 89 QFIV--SPGLTPPLLKAAQEGPIPLIPGVSTPSEL----ML-GMELGLRTFKFFPAEAS-GG-------------VKMLK 147 (212)
T ss_pred CEEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHH----HH-HHHCCCCEEEEccchhc-cC-------------HHHHH
Confidence 1111 122221 0122232 12 23588888888653211 11 45677
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+..-++++|++..||| +.+++.+.++.| +.+.+|.+.|.+..+
T Consensus 148 ~l~~p~p~~~~~ptGGV-~~~ni~~~l~ag-~v~~vggs~L~~~~~ 191 (212)
T PRK05718 148 ALAGPFPDVRFCPTGGI-SPANYRDYLALP-NVLCIGGSWMVPKDA 191 (212)
T ss_pred HHhccCCCCeEEEeCCC-CHHHHHHHHhCC-CEEEEEChHhCCcch
Confidence 77777789999999999 569999999988 455555555555443
No 234
>PRK06801 hypothetical protein; Provisional
Probab=96.83 E-value=0.054 Score=51.76 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=88.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
..|++++|=+... .+.++.+.+.||+.|.+-.. ...+..+.+...++++..+. .+++|-.-+.
T Consensus 74 ~vpV~lHlDH~~~---~e~i~~Ai~~GftSVm~D~S------------~l~~eeNi~~t~~v~~~a~~-~gv~VE~ElG~ 137 (286)
T PRK06801 74 DIPVVLNLDHGLH---FEAVVRALRLGFSSVMFDGS------------TLEYEENVRQTREVVKMCHA-VGVSVEAELGA 137 (286)
T ss_pred CCCEEEECCCCCC---HHHHHHHHHhCCcEEEEcCC------------CCCHHHHHHHHHHHHHHHHH-cCCeEEeecCc
Confidence 4466666644321 12344445567777766321 11233455566666665543 2444422221
Q ss_pred CC-CCC-----------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017148 143 IG-VDD-----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 143 ~g-~~~-----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
+| -++ ..+.++..++ .++.|+|+|.++-++..-... ..++++++.+.++.+.. ++|+
T Consensus 138 vgg~e~~v~~~~~~~~~~T~pe~a~~f----~~~tgvD~LAvaiGt~Hg~y~------~~~~l~~e~l~~i~~~~-~~PL 206 (286)
T PRK06801 138 VGGDEGGALYGEADSAKFTDPQLARDF----VDRTGIDALAVAIGNAHGKYK------GEPKLDFARLAAIHQQT-GLPL 206 (286)
T ss_pred ccCCCCCcccCCcccccCCCHHHHHHH----HHHHCcCEEEeccCCCCCCCC------CCCCCCHHHHHHHHHhc-CCCE
Confidence 11 111 1223444444 346899999996655421111 12356789898887764 8999
Q ss_pred EEecC--CCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 211 TLNGG--INTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 211 i~nGg--I~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+.-|| |. .+++.++++.|++.|-+++++..-
T Consensus 207 VlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~a 239 (286)
T PRK06801 207 VLHGGSGIS-DADFRRAIELGIHKINFYTGMSQA 239 (286)
T ss_pred EEECCCCCC-HHHHHHHHHcCCcEEEehhHHHHH
Confidence 99999 74 678899999999999999987543
No 235
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.82 E-value=0.014 Score=57.01 Aligned_cols=107 Identities=10% Similarity=0.085 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-ccCCCCCCCCCCCCcccHHH
Q 017148 119 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~~~~~ 197 (376)
.+...+.++.+++.++.|+.++++.. + .++..+. ++.++++|+|+|.+|..-. ...+..+ .......++.
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~--~---~~e~~~~-a~~~~~agad~ielN~scpp~~~~~~g---~~~~~~~~ei 156 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS--S---AGGWVDY-ARQIEQAGADALELNIYYLPTDPDISG---AEVEQRYLDI 156 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC--C---HHHHHHH-HHHHHHcCCCEEEEeCCCCCCCCCCcc---ccHHHHHHHH
Confidence 56777777777777789999999652 2 2343433 3445678999999975321 1011111 1111112456
Q ss_pred HHHHHhhCCCCeEEEe--cCCCCHHHHHHHHH-cCcCeeEE
Q 017148 198 YYALLRDFPDLTFTLN--GGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 198 v~~~~~~~~~ipVi~n--GgI~s~~da~~~l~-~Gad~Vmi 235 (376)
+.++++. .++||++. +++.+..++.++++ .|+|+|.+
T Consensus 157 l~~v~~~-~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 157 LRAVKSA-VSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred HHHHHhc-cCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 6666654 48999976 55556677777666 99999876
No 236
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.80 E-value=0.0089 Score=58.59 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=54.3
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+.|+|+|.+.+-..... +. ..++..++.+..+++.. ++||++-||| +.+++.++++.|+|+|.++++++..+
T Consensus 258 ~~GaDYI~lGPvf~T~t----Kp--~~~~~Gle~l~~~~~~~-~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~ 329 (347)
T PRK02615 258 AEGADYIGVGPVFPTPT----KP--GKAPAGLEYLKYAAKEA-PIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGAE 329 (347)
T ss_pred HcCCCEEEECCCcCCCC----CC--CCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCCC
Confidence 57999999875322110 00 11244578888877655 7999999999 58999999999999999999998754
Q ss_pred c
Q 017148 244 W 244 (376)
Q Consensus 244 ~ 244 (376)
.
T Consensus 330 d 330 (347)
T PRK02615 330 D 330 (347)
T ss_pred C
Confidence 4
No 237
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.77 E-value=0.013 Score=55.50 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=62.0
Q ss_pred HHHHHHHHhcccC--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017148 122 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 122 ~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+.+.++.+|+... .++.|- .+++++.... + ++|+|.|-+..-+ .+.+.
T Consensus 168 i~~~v~~~k~~~p~~~~I~VE-------v~tleea~~A----~-~~GaDiI~LDn~~------------------~e~l~ 217 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIE-------CESLEEAKNA----M-NAGADIVMCDNMS------------------VEEIK 217 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEE-------eCCHHHHHHH----H-HcCCCEEEECCCC------------------HHHHH
Confidence 4556666666543 345442 2356665432 2 5999988855421 33343
Q ss_pred HHHhh----CCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 200 ALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~----~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++++. .+++.+.++||| |++.+.++.++|+|.|.+|.....-|++
T Consensus 218 ~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~~~ 266 (273)
T PRK05848 218 EVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQATWI 266 (273)
T ss_pred HHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCcc
Confidence 33332 357889999999 9999999999999999999977755654
No 238
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.76 E-value=0.074 Score=49.54 Aligned_cols=158 Identities=9% Similarity=-0.003 Sum_probs=95.8
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc----cC-C-CCCCEEEEe---cCCCHHHHHHHH
Q 017148 17 MDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA----FS-P-EQHPIVLQI---GGSNLDNLAKAT 83 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~----~~-~-~~~p~~vQL---~g~~~~~~~~aa 83 (376)
.+.-|....++..+.| +..+++.-.... .+.+.+. ....++. +. . ...|+++-+ +|.+++...+.+
T Consensus 17 ~~ayD~~sA~i~e~aG-~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~ 95 (240)
T cd06556 17 LTAYDYSMAKQFADAG-LNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELA 95 (240)
T ss_pred ecCCCHHHHHHHHHcC-CCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHH
Confidence 3777888888887776 777776543322 1212211 1111111 11 1 235777775 355778888999
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC-------------CCCcc
Q 017148 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV-------------DDHDS 150 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~-------------~~~~~ 150 (376)
+++.++|+++|.|--+ ....+.++++++. +++|...+-.-. .....
T Consensus 96 ~~l~~aGa~gv~iED~--------------------~~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 96 KTFMRAGAAGVKIEGG--------------------EWHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred HHHHHcCCcEEEEcCc--------------------HHHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHH
Confidence 9998999999988421 1234556666654 367766544311 11123
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 216 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI 216 (376)
.+++++. ++.++++|+|.|.+++.+ .+.+.++.++ +++|+++||.=
T Consensus 155 ~~~ai~R-a~ay~~AGAd~i~~e~~~------------------~e~~~~i~~~-~~~P~~~~gag 200 (240)
T cd06556 155 GEQLIAD-ALAYAPAGADLIVMECVP------------------VELAKQITEA-LAIPLAGIGAG 200 (240)
T ss_pred HHHHHHH-HHHHHHcCCCEEEEcCCC------------------HHHHHHHHHh-CCCCEEEEecC
Confidence 5565554 456788999999998641 4556677766 48999988754
No 239
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.76 E-value=0.0058 Score=63.35 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=58.2
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-----------HHHHHHHH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-----------DEVNAALR 227 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-----------~da~~~l~ 227 (376)
++.+.+.|+|.|++--=++...+. .. ....++.+.++.++. .+||..-|||+|. +++++++.
T Consensus 273 a~~y~~~Gadel~~~Di~~~~~~~--~~----~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~ 345 (538)
T PLN02617 273 AGQYYKDGADEVAFLNITGFRDFP--LG----DLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVASEYFR 345 (538)
T ss_pred HHHHHHcCCCEEEEEECCCCcCCc--cc----chhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHHHHHHH
Confidence 455678999999875333211111 00 112377888888764 8999999999998 66899999
Q ss_pred cCcCeeEEchHHhhCC
Q 017148 228 KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 228 ~Gad~VmiGRa~l~~P 243 (376)
.|||-|.||++++.||
T Consensus 346 ~GadkV~i~s~Av~~~ 361 (538)
T PLN02617 346 SGADKISIGSDAVYAA 361 (538)
T ss_pred cCCCEEEEChHHHhCh
Confidence 9999999999999987
No 240
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.76 E-value=0.0094 Score=54.86 Aligned_cols=152 Identities=15% Similarity=0.071 Sum_probs=85.8
Q ss_pred CCCEEEEecCCCH---HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 64 QHPIVLQIGGSNL---DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 64 ~~p~~vQL~g~~~---~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+-|++.|=+.... ..=...++.+.++|+|+|-+.-. -|... .+.+.+.++..++ .++.+.+=
T Consensus 56 ~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~s------er~~~--------~~e~~~~v~~a~~-~Gl~~I~~ 120 (223)
T PRK04302 56 DIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHS------ERRLT--------LADIEAVVERAKK-LGLESVVC 120 (223)
T ss_pred CCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEecc------ccccC--------HHHHHHHHHHHHH-CCCeEEEE
Confidence 4577777442211 11113477788899999977521 01111 1235566666655 35433331
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHH-HHHHHHhhCCCCeEEEecCCCCH
Q 017148 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~-~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
. .+.+++. . +.+.|.+.|-+-++...-.|.. .. ...+.... .+..+++...++||++-|||.++
T Consensus 121 ----v---~~~~~~~----~-~~~~~~~~I~~~p~~~igt~~~-~~--~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~ 185 (223)
T PRK04302 121 ----V---NNPETSA----A-AAALGPDYVAVEPPELIGTGIP-VS--KAKPEVVEDAVEAVKKVNPDVKVLCGAGISTG 185 (223)
T ss_pred ----c---CCHHHHH----H-HhcCCCCEEEEeCccccccCCC-CC--cCCHHHHHHHHHHHHhccCCCEEEEECCCCCH
Confidence 1 1222322 2 2357888888766432111110 00 00111122 22333332347999999999999
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 220 DEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++..+++.|+|||.+|++++..+.+
T Consensus 186 e~~~~~~~~gadGvlVGsa~l~~~~~ 211 (223)
T PRK04302 186 EDVKAALELGADGVLLASGVVKAKDP 211 (223)
T ss_pred HHHHHHHcCCCCEEEEehHHhCCcCH
Confidence 99999999999999999999987774
No 241
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.70 E-value=0.014 Score=53.36 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=56.2
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++.|+|++.+..-..... +. ...++..++.+.++.+...++||++-||| +.+++.+++++|+++|.+-++++..
T Consensus 119 ~~~gaDYi~lgpvf~T~t----K~-~~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~~~ 192 (211)
T PRK03512 119 LAARPSYIALGHVFPTQT----KQ-MPSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAITQA 192 (211)
T ss_pred hhcCCCEEEECCccCCCC----CC-CCCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhhCC
Confidence 468999999876422110 00 11234457777777665457999999999 5999999999999999999999876
Q ss_pred Cch
Q 017148 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
+..
T Consensus 193 ~d~ 195 (211)
T PRK03512 193 ADW 195 (211)
T ss_pred CCH
Confidence 664
No 242
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=96.68 E-value=0.37 Score=46.17 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=115.5
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc-----cCCCCCCEEEEe---cCCC
Q 017148 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVLQI---GGSN 75 (376)
Q Consensus 8 ~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~-----~~~~~~p~~vQL---~g~~ 75 (376)
++.++++| ++-|.--.+++.+.| ...++|-..... .+...+- ....++. ....+.|+++-+ +|+.
T Consensus 13 ~~~~~~~p--g~~D~lSAri~e~aG-f~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~ 89 (290)
T TIGR02321 13 SGRLFTAM--AAHNPLVAKLAEQAG-FGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNA 89 (290)
T ss_pred CCCCEEec--cccCHHHHHHHHHcC-CCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCc
Confidence 34577777 666777677777776 666665533222 2222221 1111111 123467888876 4666
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCc--cccccCCHHHHHHHHHHHhcc-cCccEEEEecCCCC-CCccH
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCF--GVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVD-DHDSY 151 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~y--G~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~g~~-~~~~~ 151 (376)
+ ...+.++.+.++|+.+|.|-=..- ++ +.+.+ |..-+-+++...+-|+++++. .+.++.|=-|...- .....
T Consensus 90 ~-~v~~tV~~~~~aGvagi~IEDq~~-pk--~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~ 165 (290)
T TIGR02321 90 V-NVHYVVPQYEAAGASAIVMEDKTF-PK--DTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQ 165 (290)
T ss_pred H-HHHHHHHHHHHcCCeEEEEeCCCC-Cc--ccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCH
Confidence 6 588999999999999999964321 11 11211 212233555656666666554 34456665565321 11234
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEec---CCCCHHHHHHHHH
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNG---GINTVDEVNAALR 227 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nG---gI~s~~da~~~l~ 227 (376)
++.++. ++...++|+|.|-+++... +.+.+.++.++++ .+||+.+. ...+.++ +-+
T Consensus 166 deAI~R-a~aY~eAGAD~ifv~~~~~----------------~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~---l~~ 225 (290)
T TIGR02321 166 QEAVRR-GQAYEEAGADAILIHSRQK----------------TPDEILAFVKSWPGKVPLVLVPTAYPQLTEAD---IAA 225 (290)
T ss_pred HHHHHH-HHHHHHcCCCEEEecCCCC----------------CHHHHHHHHHhcCCCCCeEEecCCCCCCCHHH---HHH
Confidence 566665 3456689999999997421 1355666776653 36886543 2333333 334
Q ss_pred cC-cCeeEEchHHhh
Q 017148 228 KG-AHHVMVGRAAYQ 241 (376)
Q Consensus 228 ~G-ad~VmiGRa~l~ 241 (376)
.| ...|..|..++.
T Consensus 226 lg~~~~v~~g~~~~~ 240 (290)
T TIGR02321 226 LSKVGIVIYGNHAIR 240 (290)
T ss_pred hcCCcEEEEChHHHH
Confidence 45 677877755543
No 243
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.67 E-value=0.024 Score=54.23 Aligned_cols=93 Identities=15% Similarity=0.330 Sum_probs=61.2
Q ss_pred HHHHHHHHhcccC--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017148 122 VGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 122 ~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+.+.++.+|+..+ .+|.|- . ++.+++.+. + ++|+|.|-+..-+ .+.++
T Consensus 182 i~~av~~~r~~~~~~~~I~VE----v---~tleea~eA----~-~~GaD~I~LDn~~------------------~e~l~ 231 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVE----T---ETLEQVQEA----L-EYGADIIMLDNMP------------------VDLMQ 231 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEE----C---CCHHHHHHH----H-HcCCCEEEECCCC------------------HHHHH
Confidence 3455556666543 223332 1 345555432 2 6999999887322 22222
Q ss_pred HHH----hhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 200 ALL----RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~----~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++ +..+++|+.++||| +.+.+.+..++|+|++.+|+....-|++
T Consensus 232 ~av~~~~~~~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 232 QAVQLIRQQNPRVKIEASGNI-TLETIRAVAETGVDYISSSAPITRSPWL 280 (288)
T ss_pred HHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhCCCcc
Confidence 322 22468999999999 7999999999999999999988867764
No 244
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.013 Score=57.50 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=77.9
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
...++.++|.|.|-|..+ . | +...-.++++.|++.. ...|.. | +..+-+... .
T Consensus 255 rl~ll~~aGvdvviLDSS----------q-G-----nS~~qiemik~iK~~yP~l~Via----G--NVVT~~qa~----n 308 (503)
T KOG2550|consen 255 RLDLLVQAGVDVVILDSS----------Q-G-----NSIYQLEMIKYIKETYPDLQIIA----G--NVVTKEQAA----N 308 (503)
T ss_pred HHHHhhhcCCcEEEEecC----------C-C-----cchhHHHHHHHHHhhCCCceeec----c--ceeeHHHHH----H
Confidence 445677889999988531 1 3 2345678888888765 333322 1 111222221 1
Q ss_pred HhhcCCccEEEEccCc------cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017148 161 VSSLSPTRHFIIHSRK------ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~------~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
+-++|+|.+.|--+. +...+.+.++. ..-+ .+.+.+.++ .+|||+.|||.+.-++.+++..||+.||
T Consensus 309 -LI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~----TAVy-~va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGAstVM 381 (503)
T KOG2550|consen 309 -LIAAGADGLRVGMGSGSICITQKVMACGRPQG----TAVY-KVAEFANQF-GVPCIADGGIQNVGHVVKALGLGASTVM 381 (503)
T ss_pred -HHHccCceeEeccccCceeeeceeeeccCCcc----cchh-hHHHHHHhc-CCceeecCCcCccchhHhhhhcCchhhe
Confidence 236999999985432 21111111111 1112 233444555 8999999999999999999999999999
Q ss_pred EchHHhhC
Q 017148 235 VGRAAYQN 242 (376)
Q Consensus 235 iGRa~l~~ 242 (376)
+|--+-+.
T Consensus 382 mG~lLAgt 389 (503)
T KOG2550|consen 382 MGGLLAGT 389 (503)
T ss_pred ecceeeee
Confidence 99765544
No 245
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.64 E-value=0.013 Score=53.98 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=54.5
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++.|+|+|.+..-.. . + +. ..+|...+.+..+++. .++||++-||| +.+++.+++++|||+|.+-++++..
T Consensus 128 ~~~gaDYv~~Gpv~t--~--t-K~--~~~p~gl~~l~~~~~~-~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 128 GELRPDYLFFGKLGA--D--N-KP--EAHPRNLSLAEWWAEM-IEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred hhcCCCEEEECCCCC--C--C-CC--CCCCCChHHHHHHHHh-CCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 368999999865321 1 1 10 1233445666666654 48999999999 9999999999999999999999876
Q ss_pred Cch
Q 017148 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
++.
T Consensus 199 ~dp 201 (221)
T PRK06512 199 HDP 201 (221)
T ss_pred CCH
Confidence 653
No 246
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.62 E-value=0.15 Score=47.08 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=89.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
..++.+.|...|...+.+-.++++++|.|.+ |+-=|.-+++. .|| | .+++++++ +.|+.|-+
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi----tfG------p----~~i~~i~~--~~~~DvHL 75 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF----TVG------A----IAIKQFPT--HCFKDVHL 75 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc----ccC------H----HHHHHhCC--CCCEEEEe
Confidence 4568889999999999999999999998875 44334333322 144 2 34555553 45655543
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc----------ccCCC--------CCC------------------
Q 017148 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------LLNGI--------SPA------------------ 185 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~----------~~~g~--------~~~------------------ 185 (376)
=. .+ .++.++ . +.++|+|.|++|.-.. ...|. .+.
T Consensus 76 Mv--~~---P~~~i~---~-~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLi 146 (228)
T PRK08091 76 MV--RD---QFEVAK---A-CVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQI 146 (228)
T ss_pred cc--CC---HHHHHH---H-HHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEE
Confidence 32 22 222222 2 2357888888875310 00111 000
Q ss_pred -------CCCCCCcccHHHHHHH---HhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 186 -------ENRTIPPLKYEYYYAL---LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 186 -------~~~~~~~~~~~~v~~~---~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.+...-+..++-+.++ +++. .++.|-..||| +.+.+.++.+.|||.+.+|+++..++.
T Consensus 147 MtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 147 LTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSM-TLELASYLKQHQIDWVVSGSALFSQGE 215 (228)
T ss_pred EEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChhhhCCCC
Confidence 0000001112233333 2222 25668899999 488999999999999999999877666
No 247
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.62 E-value=0.009 Score=58.48 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=45.5
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
.++|+|.|.|..-. |++. --.+.++.+++.++++||| .|.|-|.+.++.++++|||+|-+|=|
T Consensus 117 ~~agvD~ivID~a~----g~s~--------~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 117 VEAGVDVIVIDSAH----GHSE--------HVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHTT-SEEEEE-SS----TTSH--------HHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHcCCCEEEccccC----ccHH--------HHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEecc
Confidence 35899999996432 2111 0146778888889889988 57799999999999999999998855
No 248
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=96.61 E-value=0.0074 Score=53.60 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=49.5
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
.+.|+|++.+..--.... . +..++..++.+.++++.. ++||++-||| +++++.+++++|+++|.+-|++
T Consensus 112 ~~~g~dYv~~gpvf~T~s-----k-~~~~~~g~~~l~~~~~~~-~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 112 EELGADYVFLGPVFPTSS-----K-PGAPPLGLDGLREIARAS-PIPVYALGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp HHCTTSEEEEETSS--SS-----S-SS-TTCHHHHHHHHHHHT-SSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred hhcCCCEEEECCccCCCC-----C-ccccccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 468999999876422111 0 112566688888888775 7999999999 7999999999999999998874
No 249
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=96.59 E-value=0.038 Score=51.87 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=80.9
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EEEEecCCCCCC-ccHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDH-DSYNQLCDFI 158 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~vKiR~g~~~~-~~~~~~~~~i 158 (376)
-.|++++++|||.|=. |.....+. .| |-....-..+.+...+++|++.++.| |++-+- +... .+.++.++..
T Consensus 23 ~sA~l~e~aG~d~i~v--Gds~~~~~-lG-~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~--fg~y~~~~~~av~~a 96 (254)
T cd06557 23 PTAKLADEAGVDVILV--GDSLGMVV-LG-YDSTLPVTLDEMIYHTRAVRRGAPRALVVADMP--FGSYQTSPEQALRNA 96 (254)
T ss_pred HHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCC--CCcccCCHHHHHHHH
Confidence 3678889999999953 43322111 11 22222345678888889999888889 666553 2222 2356666666
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE-----------EecCCC----CHH---
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-----------LNGGIN----TVD--- 220 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi-----------~nGgI~----s~~--- 220 (376)
.++++++|+++|.+.++.. ..+.++.+++. .|||+ ..||.. +.+
T Consensus 97 ~r~~~~aGa~aVkiEd~~~----------------~~~~I~al~~a--gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~ 158 (254)
T cd06557 97 ARLMKEAGADAVKLEGGAE----------------VAETIRALVDA--GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAE 158 (254)
T ss_pred HHHHHHhCCeEEEEcCcHH----------------HHHHHHHHHHc--CCCeeccccccceeeeccCCceeccCCHHHHH
Confidence 7778789999999987531 03445555543 78887 456542 332
Q ss_pred ----HHHHHHHcCcCeeEE
Q 017148 221 ----EVNAALRKGAHHVMV 235 (376)
Q Consensus 221 ----da~~~l~~Gad~Vmi 235 (376)
++..+.+.|||++.+
T Consensus 159 ~~i~ra~a~~~AGA~~i~l 177 (254)
T cd06557 159 RLLEDALALEEAGAFALVL 177 (254)
T ss_pred HHHHHHHHHHHCCCCEEEE
Confidence 223333479999876
No 250
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.51 E-value=0.052 Score=50.69 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=81.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
-.|++++++|||.|=+...+-.......| ..+-..+.+.+.++.|...+..|+++-+..|+.+.. ++.+.+.+
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~~~~s~G~pD----~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~---~~~~~v~~ 92 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAGVAASLGLPD----GGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNAL---NVARTVRE 92 (243)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHhcCCCC----CCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHH---HHHHHHHH
Confidence 36778889999999885432221111111 122355778888888888889999999999876533 33333333
Q ss_pred HhhcCCccEEEEccCcc-ccCCCCCCCCCCCCcc-cHHHHHHHHhhC---CCCeEEEecCC-----CCHHHHHH----HH
Q 017148 161 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPL-KYEYYYALLRDF---PDLTFTLNGGI-----NTVDEVNA----AL 226 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~-~~~~v~~~~~~~---~~ipVi~nGgI-----~s~~da~~----~l 226 (376)
+ .++|++.|.+-.... ...|..+. ...++.- ..+.++..++.. ++++|++--|. .+.+++.+ +.
T Consensus 93 ~-~~~G~~gv~iED~~~~k~~g~~~~-~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 93 L-EEAGAAGIHIEDQVGPKKCGHHGG-KVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred H-HHcCCEEEEEecCCCCccccCCCC-CeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 3 459999999954432 11111110 0111110 112233333222 35677766332 23444432 33
Q ss_pred HcCcCeeEEc
Q 017148 227 RKGAHHVMVG 236 (376)
Q Consensus 227 ~~Gad~VmiG 236 (376)
+.|||+|++=
T Consensus 171 ~AGAD~v~v~ 180 (243)
T cd00377 171 EAGADGIFVE 180 (243)
T ss_pred HcCCCEEEeC
Confidence 4799999984
No 251
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=96.48 E-value=0.035 Score=50.69 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=78.2
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecC-C---C--------CCCccH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI-G---V--------DDHDSY 151 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~-g---~--------~~~~~~ 151 (376)
.+-.+|+|-|.||.. ...+|+++.++-+..-..+ -+.+..|-+. | | .+...+
T Consensus 91 ~ll~aGADKVSINsa---------------Av~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~ 155 (256)
T COG0107 91 KLLRAGADKVSINSA---------------AVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGL 155 (256)
T ss_pred HHHHcCCCeeeeChh---------------HhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCc
Confidence 455689999999831 2357887777777654332 2334444432 1 1 111111
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCcc--ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-c
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-K 228 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~--~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~ 228 (376)
+.+++ ++..++.|+--|.+..-.+ ...|+ +.++++.+... ++||||++||.-++++..+++. +
T Consensus 156 -d~~~W-a~~~e~~GAGEIlLtsmD~DGtk~Gy-----------Dl~l~~~v~~~-v~iPvIASGGaG~~ehf~eaf~~~ 221 (256)
T COG0107 156 -DAVEW-AKEVEELGAGEILLTSMDRDGTKAGY-----------DLELTRAVREA-VNIPVIASGGAGKPEHFVEAFTEG 221 (256)
T ss_pred -CHHHH-HHHHHHcCCceEEEeeecccccccCc-----------CHHHHHHHHHh-CCCCEEecCCCCcHHHHHHHHHhc
Confidence 23333 3345789998888875432 22332 26677777665 5999999999999999999998 6
Q ss_pred CcCeeEEch
Q 017148 229 GAHHVMVGR 237 (376)
Q Consensus 229 Gad~VmiGR 237 (376)
.||++..+.
T Consensus 222 ~adAaLAAs 230 (256)
T COG0107 222 KADAALAAS 230 (256)
T ss_pred CccHHHhhh
Confidence 699876544
No 252
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.47 E-value=0.075 Score=52.65 Aligned_cols=124 Identities=9% Similarity=-0.044 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.+.++.+.+.||+.|.|..| +. ..++.-.+.++++|+.++ +++.+-..-+|+ .+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~------------~~---~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~----~~ 203 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPW------------GP---GVVRRDLKACLAVREAVGPDMRLMHDGAHWYS----RA 203 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecC------------Cc---hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcC----HH
Confidence 7889999999888999999988421 10 124667788999998874 566665554554 34
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC-HHHHHHHHH-cCc
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALR-KGA 230 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s-~~da~~~l~-~Ga 230 (376)
+.+++ .+.+++.++.++. . .+++.+++..+++++. .++||.+...+.+ ++++.++++ ..+
T Consensus 204 ~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~l~~~-~~ipIa~~E~~~~~~~~~~~~i~~~a~ 265 (368)
T cd03329 204 DALRL-GRALEELGFFWYE----D------------PLREASISSYRWLAEK-LDIPILGTEHSRGALESRADWVLAGAT 265 (368)
T ss_pred HHHHH-HHHhhhcCCCeEe----C------------CCCchhHHHHHHHHhc-CCCCEEccCcccCcHHHHHHHHHhCCC
Confidence 44444 3445667776655 0 1122235666677665 4899988888999 999999998 568
Q ss_pred CeeEE
Q 017148 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 266 d~v~~ 270 (368)
T cd03329 266 DFLRA 270 (368)
T ss_pred CEEec
Confidence 88877
No 253
>PRK06852 aldolase; Validated
Probab=96.47 E-value=0.3 Score=46.98 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcccCccEEEEe-cCC--CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017148 121 FVGEAMSVIAANTNVPVSVKC-RIG--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 121 ~~~eiv~~v~~~~~~pv~vKi-R~g--~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
.+.+++++. +..++|+.+=+ ..| ..+.. -.+++..++++..+.|+|.|-+---+....| ..+.
T Consensus 155 ~l~~v~~ea-~~~GlPll~~~yprG~~i~~~~-~~~~ia~aaRiaaELGADIVKv~y~~~~~~g------------~~e~ 220 (304)
T PRK06852 155 EAAQIIYEA-HKHGLIAVLWIYPRGKAVKDEK-DPHLIAGAAGVAACLGADFVKVNYPKKEGAN------------PAEL 220 (304)
T ss_pred HHHHHHHHH-HHhCCcEEEEeeccCcccCCCc-cHHHHHHHHHHHHHHcCCEEEecCCCcCCCC------------CHHH
Confidence 344444443 23588977521 123 12212 2245556677888899999987532211001 1345
Q ss_pred HHHHHhhCCCCeEEEecCCC-CHHH----HHHHHH-cCcCeeEEchHHhhCCc
Q 017148 198 YYALLRDFPDLTFTLNGGIN-TVDE----VNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~-s~~d----a~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
+.++++....+||+..||=. +.++ +.++++ .||.||.+||=....|.
T Consensus 221 f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 221 FKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred HHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 56666654368999998866 3333 344556 79999999999887754
No 254
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.46 E-value=0.13 Score=48.49 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=88.9
Q ss_pred CCCCEEEEecCCC-------HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccC-CHHHHHHHHHHHhcccC
Q 017148 63 EQHPIVLQIGGSN-------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML-DPKFVGEAMSVIAANTN 134 (376)
Q Consensus 63 ~~~p~~vQL~g~~-------~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~-~~~~~~eiv~~v~~~~~ 134 (376)
.+.|++++|.++. .+.+....+.+.+.|+|+|-++. . .|+..+. ..+.+.+++++. +..+
T Consensus 73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v-----~------~Gs~~E~~~l~~l~~v~~ea-~~~G 140 (264)
T PRK08227 73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQV-----F------IGSEYEHQSIKNIIQLVDAG-LRYG 140 (264)
T ss_pred CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE-----e------cCCHHHHHHHHHHHHHHHHH-HHhC
Confidence 3567888888642 23344445667788999887653 1 1222111 112334444442 2458
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017148 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
+|+.+=...|-...++. +++...+++..+.|+|.|-+--- -+.+.++++.. .+||+..|
T Consensus 141 ~Plla~~prG~~~~~~~-~~ia~aaRiaaELGADiVK~~y~-------------------~~~f~~vv~a~-~vPVviaG 199 (264)
T PRK08227 141 MPVMAVTAVGKDMVRDA-RYFSLATRIAAEMGAQIIKTYYV-------------------EEGFERITAGC-PVPIVIAG 199 (264)
T ss_pred CcEEEEecCCCCcCchH-HHHHHHHHHHHHHcCCEEecCCC-------------------HHHHHHHHHcC-CCcEEEeC
Confidence 99877333332222222 36666778888899998874310 03345666654 79999999
Q ss_pred CCCC-HHHHH----HHHHcCcCeeEEchHHhhCCc
Q 017148 215 GINT-VDEVN----AALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 215 gI~s-~~da~----~~l~~Gad~VmiGRa~l~~P~ 244 (376)
|=.. .+++. ++++.||.||.+||=....|.
T Consensus 200 G~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~ 234 (264)
T PRK08227 200 GKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEH 234 (264)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceeeechhhhccCC
Confidence 9763 33343 445589999999999887755
No 255
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.38 E-value=0.031 Score=54.46 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHH
Q 017148 119 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v 198 (376)
++...+.++.++.... +-.-++..+ +. .+.+..++ ++|++.|.++... |.+ ....+.+
T Consensus 69 ~~~~~~~i~~vk~~l~----v~~~~~~~~--~~---~~~~~~l~-eagv~~I~vd~~~----G~~--------~~~~~~i 126 (325)
T cd00381 69 IEEQAEEVRKVKGRLL----VGAAVGTRE--DD---KERAEALV-EAGVDVIVIDSAH----GHS--------VYVIEMI 126 (325)
T ss_pred HHHHHHHHHHhccCce----EEEecCCCh--hH---HHHHHHHH-hcCCCEEEEECCC----CCc--------HHHHHHH
Confidence 3555666777664322 222233221 11 22223333 5899999886422 111 0115667
Q ss_pred HHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 199 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 199 ~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+++++..+++||++ |.+.|.+++..+++.|||+|.+|
T Consensus 127 ~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 127 KFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 77777766788887 99999999999999999999984
No 256
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.37 E-value=0.17 Score=46.78 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=88.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017148 66 PIVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
.+.+.|...|...+.+-.+.+++ |+|.+ |+-=|.-+++. .|| -++++++++.++.|+.|-+=.
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~----tfg----------~~~i~~ir~~t~~~~DvHLMv 68 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNL----TLS----------PFFVSQVKKLASKPLDVHLMV 68 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCCc----ccC----------HHHHHHHHhcCCCCeEEEEEe
Confidence 36778888899899999998888 88875 44334333321 144 356777887777787765443
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc--c---------cCCC------CCCC--------------------
Q 017148 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--L---------LNGI------SPAE-------------------- 186 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--~---------~~g~------~~~~-------------------- 186 (376)
.+ .++.++ .+ .++|+|.|++|.-.. . ..|. .+..
T Consensus 69 --~~---P~~~i~---~~-~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV 139 (229)
T PRK09722 69 --TD---PQDYID---QL-ADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTV 139 (229)
T ss_pred --cC---HHHHHH---HH-HHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEE
Confidence 22 222222 22 257899999886421 0 0010 0000
Q ss_pred -----CCCCCcccHHHHHHHH---hhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH-Hhh
Q 017148 187 -----NRTIPPLKYEYYYALL---RDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA-AYQ 241 (376)
Q Consensus 187 -----~~~~~~~~~~~v~~~~---~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa-~l~ 241 (376)
+...-+..++-+++++ ++. .++.|-..|||+ .+.+.++.+.|||.+.+|+. +..
T Consensus 140 ~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 140 DPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFN 203 (229)
T ss_pred cCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcC
Confidence 0000000122233332 222 246688999995 78898999999999999976 544
No 257
>PRK14057 epimerase; Provisional
Probab=96.32 E-value=0.35 Score=45.32 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=90.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEE--EecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEI--NLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~I--eiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
...++.+.|...|...+.+..+.++++|+|.+ |+-=|.-+++. .|| | ++++++++ +.|+.|-
T Consensus 18 ~~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNi----tfG------p----~~i~~i~~--~~p~DvH 81 (254)
T PRK14057 18 ASYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQF----TVG------P----WAVGQLPQ--TFIKDVH 81 (254)
T ss_pred cCCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcc----ccC------H----HHHHHhcc--CCCeeEE
Confidence 35678999999999999999999999998875 44334333322 145 3 34455554 4565554
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc----------ccCCC----------CC-CCCCCCCc-------
Q 017148 141 CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------LLNGI----------SP-AENRTIPP------- 192 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~----------~~~g~----------~~-~~~~~~~~------- 192 (376)
+=. .+ .+..++ . +.++|+|.|++|.-.. ...|. .+ +-++..+.
T Consensus 82 LMV--~~---P~~~i~---~-~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l 152 (254)
T PRK14057 82 LMV--AD---QWTAAQ---A-CVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPIL 152 (254)
T ss_pred eee--CC---HHHHHH---H-HHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHH
Confidence 332 22 222222 1 2257888888885421 00121 00 00000000
Q ss_pred ----------------------ccHHHHHH---HHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 193 ----------------------LKYEYYYA---LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 193 ----------------------~~~~~v~~---~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
..++-+.+ .+++. .++.|-..||| +.+.+.++.+.|||.+.+|+++..++.
T Consensus 153 ~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GSalF~~~d 229 (254)
T PRK14057 153 SDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGSALFRDDR 229 (254)
T ss_pred HhCCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCC
Confidence 00122222 22222 24678899999 677898999999999999999876655
No 258
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.31 E-value=0.12 Score=45.95 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=66.1
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC-----ccHHHH
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-----DSYNQL 154 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~-----~~~~~~ 154 (376)
...|+-+++.|+.+|-+|. .+-++++++.+++||.==+...+++. .++++.
T Consensus 2 ~~mA~Aa~~gGA~giR~~~------------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev 57 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG------------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEV 57 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES------------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHH
T ss_pred HHHHHHHHHCCceEEEcCC------------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHH
Confidence 4566777788888887761 13367789999999862222223321 245553
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017148 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
. .++ ++|+|.|.+.+-.+.. |....+.+.++++++ +..-.||.|.+++..+.+.|+|.|.
T Consensus 58 ~----~l~-~aGadIIAlDaT~R~R-----------p~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 58 D----ALA-EAGADIIALDATDRPR-----------PETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp H----HHH-HCT-SEEEEE-SSSS------------SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE
T ss_pred H----HHH-HcCCCEEEEecCCCCC-----------CcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEE
Confidence 2 233 6999999998744311 111245677777654 6677899999999999999999775
No 259
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.30 E-value=0.17 Score=51.51 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=85.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC------------CCCCC
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------------GVDDH 148 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~------------g~~~~ 148 (376)
+.|+.. +.|+++|-+. +....|||++. -++.+++.+++||..|==+ |-|-.
T Consensus 74 ~~a~~y-~~gA~aiSVl--------Te~~~F~Gs~~--------~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADav 136 (454)
T PRK09427 74 EIARVY-KHYASAISVL--------TDEKYFQGSFD--------FLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAI 136 (454)
T ss_pred HHHHHH-HcCCeEEEEe--------cCcCcCCCCHH--------HHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCch
Confidence 444444 6678888775 23445776653 3456677788999887221 11110
Q ss_pred ------ccHHHHHHHHHHHhhcCCccEE-EEccCcccc----CC--CCCCCCCCCCc--ccHHHHHHHHhhCC-CCeEEE
Q 017148 149 ------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKALL----NG--ISPAENRTIPP--LKYEYYYALLRDFP-DLTFTL 212 (376)
Q Consensus 149 ------~~~~~~~~~i~~~~e~~Gvd~I-~vh~r~~~~----~g--~~~~~~~~~~~--~~~~~v~~~~~~~~-~ipVi~ 212 (376)
-+-+++.++ ...+.+.|.+.+ .||...... .| .-+-+++.... .+.....++....| ++.+|+
T Consensus 137 LLI~~~L~~~~l~~l-~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vs 215 (454)
T PRK09427 137 LLMLSVLDDEQYRQL-AAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVIS 215 (454)
T ss_pred hHHHHhCCHHHHHHH-HHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEE
Confidence 001122222 234456787766 577653110 01 01122333322 23444455555554 577899
Q ss_pred ecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 213 NGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 213 nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
-+||.|++|+..+.. |+|+|.||.+++..|..
T Consensus 216 eSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~ 247 (454)
T PRK09427 216 ESGIYTHAQVRELSP-FANGFLIGSSLMAEDDL 247 (454)
T ss_pred eCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCH
Confidence 999999999999755 79999999999999885
No 260
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.29 E-value=0.14 Score=48.99 Aligned_cols=144 Identities=11% Similarity=0.056 Sum_probs=74.9
Q ss_pred HHHHHHHHCC-CCEEEecCCCCC-------ccccCCCCccccccCC-------HHHHHHHHHHHhcccCccEEEEecCCC
Q 017148 81 KATELANAYN-YDEINLNCGCPS-------PKVAGHGCFGVSLMLD-------PKFVGEAMSVIAANTNVPVSVKCRIGV 145 (376)
Q Consensus 81 ~aa~~~~~~G-~d~IeiN~gcP~-------~~v~r~g~yG~~l~~~-------~~~~~eiv~~v~~~~~~pv~vKiR~g~ 145 (376)
+..+.+.+.| |.+|.+-.=.+. +...+.. .++.|. ++...+-+...++..+.|+.+-+...
T Consensus 24 ~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~---~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~g~- 99 (296)
T cd04740 24 EELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP---GGMLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAGS- 99 (296)
T ss_pred HHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecC---cceeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEecC-
Confidence 3444555566 999988653322 2211211 222222 23333444444444578888877642
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE--ecCCCCHHHHH
Q 017148 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEVN 223 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da~ 223 (376)
+.++..+. ++.++++|+|+|.+|-......+. +......+....+.+.++++. .++||+. +.++.+..++.
T Consensus 100 ----~~~~~~~~-a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl~~~~~~~~~~a 172 (296)
T cd04740 100 ----TVEEFVEV-AEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKA-TDVPVIVKLTPNVTDIVEIA 172 (296)
T ss_pred ----CHHHHHHH-HHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhc-cCCCEEEEeCCCchhHHHHH
Confidence 23344443 445567899999998654432221 111111112223455555554 3788874 44555555544
Q ss_pred HHH-HcCcCeeEE
Q 017148 224 AAL-RKGAHHVMV 235 (376)
Q Consensus 224 ~~l-~~Gad~Vmi 235 (376)
+.+ +.|+|+|.+
T Consensus 173 ~~~~~~G~d~i~~ 185 (296)
T cd04740 173 RAAEEAGADGLTL 185 (296)
T ss_pred HHHHHcCCCEEEE
Confidence 444 489999865
No 261
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=96.23 E-value=0.43 Score=43.54 Aligned_cols=181 Identities=13% Similarity=0.157 Sum_probs=97.2
Q ss_pred CCCCChHHHHHHHHHhCCCcEEEecceeeccccc--ccchhhhhhc-cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCC
Q 017148 16 MMDWTDNHYRTLARLISKHAWLYTEMLAAETIIY--QQGNLDRFLA-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYD 92 (376)
Q Consensus 16 M~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~--~~~~~~~~~~-~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d 92 (376)
.+|+++..-..++.++| ++++. ++....--+ .......+.. +.+.-.+++| +...+++.. .+.+++.+.|
T Consensus 7 ICGi~~~eda~~~~~~G-ad~iG--fI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i---~~~~~~~~~d 79 (210)
T PRK01222 7 ICGITTPEDAEAAAELG-ADAIG--FVFYPKSPRYVSPEQAAELAAALPPFVKVVGV-FVNASDEEI---DEIVETVPLD 79 (210)
T ss_pred ECCCCcHHHHHHHHHcC-CCEEE--EccCCCCCCcCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHH---HHHHHhcCCC
Confidence 36888888888888876 65543 332111000 0111122222 2222233332 223455544 4456688999
Q ss_pred EEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE
Q 017148 93 EINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 93 ~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
.|.||...+ +++ ++.+++..++++.-.++.. +..++... ... ...+|++.+
T Consensus 80 ~vQLHg~e~-----------------~~~----~~~l~~~~~~~iik~i~v~--~~~~l~~~----~~~--~~~~d~~L~ 130 (210)
T PRK01222 80 LLQLHGDET-----------------PEF----CRQLKRRYGLPVIKALRVR--SAGDLEAA----AAY--YGDADGLLL 130 (210)
T ss_pred EEEECCCCC-----------------HHH----HHHHHhhcCCcEEEEEecC--CHHHHHHH----Hhh--hccCCEEEE
Confidence 999985322 222 3444544456665444442 21112111 111 236899888
Q ss_pred ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017148 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 173 h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
.......+|. +. ..+|..+. +.. +.|++..||| +++.+.++++ .+..+|=+-+|+=..|-
T Consensus 131 Ds~~~~~GGt-G~------~~dw~~l~---~~~-~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 131 DAYVGLPGGT-GK------TFDWSLLP---AGL-AKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPG 191 (210)
T ss_pred cCCCCCCCCC-CC------ccchHHhh---hcc-CCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceECCCC
Confidence 8655422222 21 22355441 233 5699999999 8999999997 58888888888765454
No 262
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.21 E-value=0.042 Score=53.21 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhh-cCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017148 119 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSS-LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e-~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
++.-.+.++.++.....-+.| ..|..+ ++++.+ .++++ .+|+|.|+|..-. |++. ...+.
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~-~d~er~----~~L~~~~~g~D~iviD~Ah----Ghs~--------~~i~~ 141 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSD-ADFEKT----KQILALSPALNFICIDVAN----GYSE--------HFVQF 141 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCH-HHHHHH----HHHHhcCCCCCEEEEECCC----CcHH--------HHHHH
Confidence 444455555555433223333 445443 334332 33444 3799999985321 2211 11567
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017148 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
++.+++.+|+++ |..|.|-|++.+++++..|||+|=+|=
T Consensus 142 ik~ik~~~P~~~-vIaGNV~T~e~a~~Li~aGAD~vKVGI 180 (346)
T PRK05096 142 VAKAREAWPDKT-ICAGNVVTGEMVEELILSGADIVKVGI 180 (346)
T ss_pred HHHHHHhCCCCc-EEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 888888888887 556999999999999999999975443
No 263
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.18 E-value=0.089 Score=48.98 Aligned_cols=201 Identities=17% Similarity=0.193 Sum_probs=115.9
Q ss_pred CCcEEEccCCCCChHHHHHHHHHhCCCcEEEeccee-ecccccccch---hhhhhc-----cCCCCCCEEEEe---cCCC
Q 017148 8 PPWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLA-AETIIYQQGN---LDRFLA-----FSPEQHPIVLQI---GGSN 75 (376)
Q Consensus 8 ~nri~lAPM~~~td~~~r~~~~~~Gg~gl~~te~v~-~~~~~~~~~~---~~~~~~-----~~~~~~p~~vQL---~g~~ 75 (376)
++..+++| ++-|..-.+++...| ...++|-... +..+...+.. ..+++. ....+.|+++-+ ||++
T Consensus 7 ~~~~l~~p--~~~D~~SAr~~e~~G-f~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~ 83 (238)
T PF13714_consen 7 PGKPLVLP--NVWDALSARLAERAG-FDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGND 83 (238)
T ss_dssp SSSSEEEE--EESSHHHHHHHHHTT--SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSS
T ss_pred CCCcEEeC--CCcCHHHHHHHHHcC-CCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCch
Confidence 33455555 566777777777776 6666654332 2222222111 111111 112367888877 4677
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCC-CCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCC--CCccH
Q 017148 76 LDNLAKATELANAYNYDEINLNCG-CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVD--DHDSY 151 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~g-cP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~--~~~~~ 151 (376)
+....+.++.+.++|+.+|.|.=. |. + . |..+. .++...+=|++++++. +..+.|=-|...- ....+
T Consensus 84 ~~~v~~tv~~~~~aG~agi~IEDq~~~------~-~-~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~ 154 (238)
T PF13714_consen 84 PENVARTVRELERAGAAGINIEDQRCG------H-G-GKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGL 154 (238)
T ss_dssp HHHHHHHHHHHHHCT-SEEEEESBSTT------T-S-TT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHH
T ss_pred hHHHHHHHHHHHHcCCcEEEeeccccC------C-C-CCcee-CHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCH
Confidence 999999999999999999999643 22 1 1 33444 5666666566665443 2224444454211 12346
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH 231 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad 231 (376)
++.++.. +.+.++|+|.|-+++-.. .+.+.++.+++ +.|+..+-+ ...-++.++.+.|+.
T Consensus 155 deaI~R~-~aY~eAGAD~ifi~~~~~-----------------~~~i~~~~~~~-~~Pl~v~~~-~~~~~~~eL~~lGv~ 214 (238)
T PF13714_consen 155 DEAIERA-KAYAEAGADMIFIPGLQS-----------------EEEIERIVKAV-DGPLNVNPG-PGTLSAEELAELGVK 214 (238)
T ss_dssp HHHHHHH-HHHHHTT-SEEEETTSSS-----------------HHHHHHHHHHH-SSEEEEETT-SSSS-HHHHHHTTES
T ss_pred HHHHHHH-HHHHHcCCCEEEeCCCCC-----------------HHHHHHHHHhc-CCCEEEEcC-CCCCCHHHHHHCCCc
Confidence 6666653 455679999999998531 34467777776 799877764 222566667778999
Q ss_pred eeEEchHHh
Q 017148 232 HVMVGRAAY 240 (376)
Q Consensus 232 ~VmiGRa~l 240 (376)
.|.+|-.++
T Consensus 215 ~v~~~~~~~ 223 (238)
T PF13714_consen 215 RVSYGNSLL 223 (238)
T ss_dssp EEEETSHHH
T ss_pred EEEEcHHHH
Confidence 999887654
No 264
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=96.18 E-value=0.25 Score=46.65 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=87.2
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceee-cccccccc---hhhhhhc-----cCCCCC-CEEEEec-C---CCHHH-HHHH
Q 017148 18 DWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQG---NLDRFLA-----FSPEQH-PIVLQIG-G---SNLDN-LAKA 82 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~-~~~~~~~~---~~~~~~~-----~~~~~~-p~~vQL~-g---~~~~~-~~~a 82 (376)
+.-|....+++.+.| ++.+.|+.... ..+.+.+. ..+.++. ...... ++++-+- | .++++ +..+
T Consensus 21 tayD~~sArl~e~aG-~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a 99 (264)
T PRK00311 21 TAYDYPFAKLFDEAG-VDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNA 99 (264)
T ss_pred eCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHH
Confidence 677888988888886 88888762221 11222221 1111111 111233 3555552 3 35665 5556
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec--------------CCCCCC
Q 017148 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--------------IGVDDH 148 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR--------------~g~~~~ 148 (376)
.+.++++|+++|.|--| +...+.++++++. ++||.--+- .|-++
T Consensus 100 ~r~~~~aGa~aVkiEdg--------------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~- 157 (264)
T PRK00311 100 GRLMKEAGAHAVKLEGG--------------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDE- 157 (264)
T ss_pred HHHHHHhCCeEEEEcCc--------------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCH-
Confidence 66677799999988432 2345666666543 777741111 11111
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017148 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
+..+++++. ++.++++|++.|.+-+-. -+..+++.++. ++|+|+-|-
T Consensus 158 ~~a~~~i~r-a~a~~eAGA~~i~lE~v~------------------~~~~~~i~~~l-~iP~igiGa 204 (264)
T PRK00311 158 EAAEKLLED-AKALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIGA 204 (264)
T ss_pred HHHHHHHHH-HHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEecc
Confidence 224555554 456788999999987531 24455666665 899997653
No 265
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.17 E-value=0.14 Score=49.49 Aligned_cols=129 Identities=10% Similarity=0.071 Sum_probs=84.3
Q ss_pred hhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017148 56 RFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 56 ~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
.+...+..+.|+++ +...|. ..|++++++|+|.|-+-- ....+. -+|-+.+--..+.+...+++|++.+..
T Consensus 26 ~l~~~k~~g~kivm-lTAyD~----~sA~i~d~aGvD~ILVGD--Slgmv~--lG~~~T~~Vtld~mi~H~~aV~Rga~~ 96 (332)
T PLN02424 26 TLRQKYRRGEPITM-VTAYDY----PSAVHVDSAGIDVCLVGD--SAAMVV--HGHDTTLPITLDEMLVHCRAVARGANR 96 (332)
T ss_pred HHHHHHhCCCcEEE-EecCCH----HHHHHHHHcCCCEEEECC--cHHHHh--cCCCCCCCcCHHHHHHHHHHHhccCCC
Confidence 34444555556543 555553 477889999999997732 211111 123444445678888999999999989
Q ss_pred cEEE-EecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017148 136 PVSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 136 pv~v-KiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
|++| -+..|... .+.++.++.+.+++.++|+++|.+-|+... ..+.++.+.+. +|||+
T Consensus 97 a~vVaDmPfgSY~-~s~e~av~nA~rl~~eaGa~aVKlEGg~~~---------------~~~~I~~l~~~--GIPV~ 155 (332)
T PLN02424 97 PLLVGDLPFGSYE-SSTDQAVESAVRMLKEGGMDAVKLEGGSPS---------------RVTAAKAIVEA--GIAVM 155 (332)
T ss_pred CEEEeCCCCCCCC-CCHHHHHHHHHHHHHHhCCcEEEECCCcHH---------------HHHHHHHHHHc--CCCEE
Confidence 9888 77776222 345666776677777899999999987310 13556666643 89998
No 266
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=96.15 E-value=0.28 Score=46.87 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=95.8
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.+...|+++++.+.+.++..+.++.++++|+|++-+-. |... . ...+.+.+-.+.|.+.++.|+.+-
T Consensus 67 ~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~-------~----~s~~~l~~y~~~ia~~~~~pi~iY 133 (289)
T PF00701_consen 67 AAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP--PYYF-------K----PSQEELIDYFRAIADATDLPIIIY 133 (289)
T ss_dssp HTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE--STSS-------S----CCHHHHHHHHHHHHHHSSSEEEEE
T ss_pred ccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec--cccc-------c----chhhHHHHHHHHHHhhcCCCEEEE
Confidence 34567999999999999999999999999999998853 4321 1 245667888888888889999986
Q ss_pred ecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCC
Q 017148 141 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINT 218 (376)
Q Consensus 141 iR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s 218 (376)
-.+..... -+. ++ +.++++--.+-.|-.+.+. +..+.++.+.. +++ .+.+| +
T Consensus 134 n~P~~tg~~ls~-~~---l~~L~~~~nv~giK~s~~~------------------~~~~~~~~~~~~~~~-~v~~G---~ 187 (289)
T PF00701_consen 134 NNPARTGNDLSP-ET---LARLAKIPNVVGIKDSSGD------------------LERLIQLLRAVGPDF-SVFCG---D 187 (289)
T ss_dssp EBHHHHSSTSHH-HH---HHHHHTSTTEEEEEESSSB------------------HHHHHHHHHHSSTTS-EEEES---S
T ss_pred ECCCccccCCCH-HH---HHHHhcCCcEEEEEcCchh------------------HHHHHHHhhhcccCe-eeecc---c
Confidence 54421111 122 22 2344432234444433221 33334444443 244 35566 2
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017148 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
-+.+...+..|+||++.|-+.+ -|+++.+.++....|
T Consensus 188 d~~~~~~l~~G~~G~is~~~n~-~P~~~~~i~~~~~~G 224 (289)
T PF00701_consen 188 DELLLPALAAGADGFISGLANV-FPELIVEIYDAFQAG 224 (289)
T ss_dssp GGGHHHHHHTTSSEEEESGGGT-HHHHHHHHHHHHHTT
T ss_pred cccccccccccCCEEEEccccc-ChHHHHHHHHHHHcC
Confidence 2335567778999999998765 466655555544445
No 267
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.11 E-value=0.15 Score=49.38 Aligned_cols=157 Identities=12% Similarity=0.030 Sum_probs=85.2
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhhc-----cCCCCCCEEE-Ee----cCCCHHHHHHHH
Q 017148 18 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFLA-----FSPEQHPIVL-QI----GGSNLDNLAKAT 83 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~~-----~~~~~~p~~v-QL----~g~~~~~~~~aa 83 (376)
+.-|.++..++.+.| ++++-++-.... .+.+.+. ..+.++. ..-...++++ -+ ++.++++..+.|
T Consensus 41 TAyD~~sA~i~d~aG-vD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA 119 (332)
T PLN02424 41 TAYDYPSAVHVDSAG-IDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESA 119 (332)
T ss_pred ecCCHHHHHHHHHcC-CCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHH
Confidence 455777777777775 777655522221 1111111 1111111 1223455554 32 234677766666
Q ss_pred HHH-HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC----CCCc
Q 017148 84 ELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHD 149 (376)
Q Consensus 84 ~~~-~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~----~~~~ 149 (376)
.++ +++|+++|.|-.|+ ....++++++. ..++||.--+-+ |+ .+.+
T Consensus 120 ~rl~~eaGa~aVKlEGg~-------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~ 179 (332)
T PLN02424 120 VRMLKEGGMDAVKLEGGS-------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAE 179 (332)
T ss_pred HHHHHHhCCcEEEECCCc-------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHH
Confidence 655 78999999885432 22345566665 457888733222 11 1112
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017148 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
...++++. ++.++++|++.|.+-+-. -+..+++.++ .+||+|+-|-
T Consensus 180 ~a~~li~d-A~ale~AGAf~ivLE~Vp------------------~~la~~It~~-l~IPtIGIGA 225 (332)
T PLN02424 180 SAVKVVET-ALALQEAGCFAVVLECVP------------------APVAAAITSA-LQIPTIGIGA 225 (332)
T ss_pred HHHHHHHH-HHHHHHcCCcEEEEcCCc------------------HHHHHHHHHh-CCCCEEeecC
Confidence 23445543 456789999999987632 2334555555 4899997653
No 268
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.09 E-value=0.57 Score=44.44 Aligned_cols=198 Identities=14% Similarity=0.087 Sum_probs=109.3
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec-ccccccch---hhhhhc-----cCCCCCCEEEEe---cCCCHHHHHHHHHH
Q 017148 18 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQGN---LDRFLA-----FSPEQHPIVLQI---GGSNLDNLAKATEL 85 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~~---~~~~~~-----~~~~~~p~~vQL---~g~~~~~~~~aa~~ 85 (376)
++=|..-..+..+.| .--+||-...+. .+...+-. ....+. ....+-|+.+-+ ||+ +...++.++.
T Consensus 24 g~~d~~sA~la~~aG-F~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nvartV~~ 101 (289)
T COG2513 24 GAWDAGSALLAERAG-FKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGE-ALNVARTVRE 101 (289)
T ss_pred CCcCHHHHHHHHHcC-CeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHHHHHHHH
Confidence 444555566666665 555554433222 22222111 111111 133577888887 466 8889999999
Q ss_pred HHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhc
Q 017148 86 ANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL 164 (376)
Q Consensus 86 ~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~ 164 (376)
+.++|..+|.|-=-. .+|-+ |+.-+.-+-+++...+-|+++++.. +.++.+=-|...--...+++.++. ++...+
T Consensus 102 ~~~aG~agi~iEDq~-~pk~c--gh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~R-a~AY~e 177 (289)
T COG2513 102 LEQAGAAGIHIEDQV-GPKRC--GHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIER-AQAYVE 177 (289)
T ss_pred HHHcCcceeeeeecc-cchhc--CCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHH-HHHHHH
Confidence 999999998874110 01111 1111122335555555566666554 456666555421111225555554 345678
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---cCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n---GgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+|+|.|-.++.+. .+.+.++.+++ ++|+.+| .+-.-.-++.+.-+.|+..|..|-.+
T Consensus 178 AGAD~if~~al~~-----------------~e~i~~f~~av-~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~~ 237 (289)
T COG2513 178 AGADAIFPEALTD-----------------LEEIRAFAEAV-PVPLPANITEFGKTPLLTVAELAELGVKRVSYGLTA 237 (289)
T ss_pred cCCcEEccccCCC-----------------HHHHHHHHHhc-CCCeeeEeeccCCCCCcCHHHHHhcCceEEEECcHH
Confidence 9999999887642 45667777765 5777666 22211223334445799999886443
No 269
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.05 E-value=0.062 Score=52.06 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhc-CCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017148 119 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~-~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
++.-.+.++.+.+....-+.| ..|..+ ++++. +..+++. .|+|.|+|..-. |++. ...+.
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~~-~d~er----~~~L~~a~~~~d~iviD~Ah----Ghs~--------~~i~~ 140 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSSD-NDLEK----MTSILEAVPQLKFICLDVAN----GYSE--------HFVEF 140 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccCH-HHHHH----HHHHHhcCCCCCEEEEECCC----CcHH--------HHHHH
Confidence 344444454444333333333 444443 23333 2334432 369999985321 2111 11566
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
++.+++.+|+ +.|..|.|.|+++++++++.|||+|-+|
T Consensus 141 ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 141 VKLVREAFPE-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHhhCCC-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 7788887766 5667799999999999999999999877
No 270
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.00 E-value=0.57 Score=44.69 Aligned_cols=150 Identities=12% Similarity=0.193 Sum_probs=92.6
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|+++.|=+. +.+. ++.+.++||+.|-+-.+ --.++.+.+...++++.... .+++|-.-+.
T Consensus 74 ~vPV~lHLDH~~~~e~----i~~Ai~~GftSVM~DgS------------~l~~eeNi~~T~~vve~Ah~-~gv~VEaElG 136 (283)
T PRK07998 74 DVPVSLHLDHGKTFED----VKQAVRAGFTSVMIDGA------------ALPFEENIAFTKEAVDFAKS-YGVPVEAELG 136 (283)
T ss_pred CCCEEEECcCCCCHHH----HHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEec
Confidence 44666666443 3222 23344667777766321 11223466677777776654 4666533321
Q ss_pred -C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017148 143 -I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 143 -~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
+ |-++ ..+.++..+| .++.|+|.+.|.-++..-.+. . +.++++.+.++.+.. ++|++.
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a~~F----v~~TgvD~LAvaiGt~HG~Y~------~-p~l~~~~l~~I~~~~-~vPLVl 204 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKVKDF----VERTGCDMLAVSIGNVHGLED------I-PRIDIPLLKRIAEVS-PVPLVI 204 (283)
T ss_pred cCCCccccccccccccCCHHHHHHH----HHHhCcCeeehhccccccCCC------C-CCcCHHHHHHHHhhC-CCCEEE
Confidence 1 2221 1345555554 357899999988776421111 1 446688999987765 899999
Q ss_pred ecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017148 213 NGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 213 nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
-||=-.+ +++.++++.|+.-|=++|.+...
T Consensus 205 HGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~a 235 (283)
T PRK07998 205 HGGSGIPPEILRSFVNYKVAKVNIASDLRKA 235 (283)
T ss_pred eCCCCCCHHHHHHHHHcCCcEEEECHHHHHH
Confidence 9887766 67788888999999999987544
No 271
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.96 E-value=0.27 Score=46.23 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=87.4
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceee-cccccccc---hhhhhhc-----cCCCCCC-EEEEec-C---CCHHHHHHHH
Q 017148 18 DWTDNHYRTLARLISKHAWLYTEMLAA-ETIIYQQG---NLDRFLA-----FSPEQHP-IVLQIG-G---SNLDNLAKAT 83 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~-~~~~~~~~---~~~~~~~-----~~~~~~p-~~vQL~-g---~~~~~~~~aa 83 (376)
+.-|....+++.+.| +..++|..... ..+.+.+. ..+.++. ....+.| +++-+- | +++++..+.+
T Consensus 18 ~ayD~~sA~l~e~aG-~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a 96 (254)
T cd06557 18 TAYDYPTAKLADEAG-VDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNA 96 (254)
T ss_pred eCCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHH
Confidence 667888888888876 88888763222 11222211 1111111 1223456 555442 3 4577766655
Q ss_pred H-HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC----CCCc
Q 017148 84 E-LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHD 149 (376)
Q Consensus 84 ~-~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~----~~~~ 149 (376)
. .++++|+++|.|--| ....+.|+++++ .++||.--+-+ |+ ....
T Consensus 97 ~r~~~~aGa~aVkiEd~--------------------~~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~ 155 (254)
T cd06557 97 ARLMKEAGADAVKLEGG--------------------AEVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEE 155 (254)
T ss_pred HHHHHHhCCeEEEEcCc--------------------HHHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHH
Confidence 4 555699999988432 245556666654 35666522211 11 1112
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017148 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
..+++++. ++.++++|++.|.+-+-. -+..+++.++. ++|+|+-|.
T Consensus 156 ~a~~~i~r-a~a~~~AGA~~i~lE~v~------------------~~~~~~i~~~v-~iP~igiGa 201 (254)
T cd06557 156 EAERLLED-ALALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIGA 201 (254)
T ss_pred HHHHHHHH-HHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEecc
Confidence 24555554 456788999999987531 24456666665 899998764
No 272
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.95 E-value=0.13 Score=49.03 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
-.|+.++++||++|=+...+=.......|. | ++ ..+.+.+.++.|...+++||++-+-.|+-+..++.+++ +
T Consensus 24 ~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~-g--~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv----~ 95 (285)
T TIGR02317 24 MAALLAERAGFEAIYLSGAAVAASLGLPDL-G--IT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTV----R 95 (285)
T ss_pred HHHHHHHHcCCCEEEEcHHHHHHhCCCCCC-C--CC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHH----H
Confidence 367788899999998864332111111232 2 22 56677778888888899999999998887644443333 2
Q ss_pred HhhcCCccEEEEccC
Q 017148 161 VSSLSPTRHFIIHSR 175 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r 175 (376)
.++++|+..|++--.
T Consensus 96 ~~~~aG~agi~IEDq 110 (285)
T TIGR02317 96 EMEDAGAAAVHIEDQ 110 (285)
T ss_pred HHHHcCCeEEEEecC
Confidence 345799999999643
No 273
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.92 E-value=0.15 Score=48.79 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=57.5
Q ss_pred HHHHHHHHCCCCEEEecCCCCC-ccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPS-PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~-~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
-.|+.++++||++|=+...+=. ......|. | +-..+.+.+.++.|.+.+++||++-+-.|+-+..++.++ +.
T Consensus 28 ~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~---V~ 100 (292)
T PRK11320 28 YHALLAERAGFKAIYLSGGGVAAASLGLPDL-G---ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIART---VK 100 (292)
T ss_pred HHHHHHHHcCCCEEEeCHHHHHhHhcCCCCC-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHH---HH
Confidence 3678889999999977543111 11111232 2 234567788888888889999999999888754444333 33
Q ss_pred HHhhcCCccEEEEcc
Q 017148 160 KVSSLSPTRHFIIHS 174 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~ 174 (376)
.++++|+..|++--
T Consensus 101 -~~~~aGaagi~IED 114 (292)
T PRK11320 101 -SMIKAGAAAVHIED 114 (292)
T ss_pred -HHHHcCCeEEEEec
Confidence 34679999999954
No 274
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.91 E-value=0.14 Score=47.28 Aligned_cols=139 Identities=14% Similarity=0.156 Sum_probs=75.0
Q ss_pred CCCEEEEe----cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEE
Q 017148 64 QHPIVLQI----GGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVS 138 (376)
Q Consensus 64 ~~p~~vQL----~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~ 138 (376)
+.++++-+ .++.+.. +++.+.++|+|.+-+|+..+ .+-+...+++.++.. +.-+.
T Consensus 53 ~~~i~~D~Kl~Di~~t~~~---~i~~~~~~gad~itvH~~ag-----------------~~~i~~~~~~~~~~~~~~~~~ 112 (230)
T PRK00230 53 GFKVFLDLKLHDIPNTVAK---AVRALAKLGVDMVNVHASGG-----------------PRMMKAAREALEPKSRPLLIA 112 (230)
T ss_pred CCCEEEEeehhhccccHHH---HHHHHHHcCCCEEEEcccCC-----------------HHHHHHHHHHhhccCCCeEEE
Confidence 34555544 3555554 44556789999999985322 223344444433211 11222
Q ss_pred EEecCCCCC--C------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017148 139 VKCRIGVDD--H------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 139 vKiR~g~~~--~------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
|-+-..++. . .++++.+..+++...+.|+|.+.++... +..+++..++-.+
T Consensus 113 V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~~---------------------~~~ir~~~~~~~~ 171 (230)
T PRK00230 113 VTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQE---------------------AAAIREATGPDFL 171 (230)
T ss_pred EEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChHH---------------------HHHHHhhcCCceE
Confidence 221112211 0 1123444344556667898887765321 1122222223345
Q ss_pred EEecCCCCHH-----------HHHHHHHcCcCeeEEchHHhhCCc
Q 017148 211 TLNGGINTVD-----------EVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 211 i~nGgI~s~~-----------da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+.++||. ++ ...++++.|+|+|.+||+....+.
T Consensus 172 ~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~d 215 (230)
T PRK00230 172 LVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAAD 215 (230)
T ss_pred EEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCC
Confidence 6667775 33 467777889999999999987766
No 275
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.89 E-value=0.024 Score=58.46 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=48.1
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++|+|.|.|... .|.+. ..++.++++++.++++||++ |+|.|.+++..+++.|||+|.+|
T Consensus 249 l~~ag~d~i~id~a----~G~s~--------~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 249 LIEAGVDVLVVDSS----QGNSI--------YQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHCCCCEEEEecC----CCCch--------HHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 44699999998642 12111 12678888888888888777 99999999999999999999864
No 276
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.87 E-value=0.03 Score=51.15 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=53.3
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.+++.|+++|++..-.....|. .+.+..+++. +++||+.-|.|.+..+++.+++.|||+|.++-.
T Consensus 37 A~~~~~~GA~~l~v~~~~~~~~g~------------~~~~~~i~~~-v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~ 103 (217)
T cd00331 37 AKAYEKAGAAAISVLTEPKYFQGS------------LEDLRAVREA-VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVA 103 (217)
T ss_pred HHHHHHcCCCEEEEEeCccccCCC------------HHHHHHHHHh-cCCCEEECCeecCHHHHHHHHHcCCCEEEEeec
Confidence 445678999999887544322221 4555566554 489999989999999999999999999999887
Q ss_pred HhhC
Q 017148 239 AYQN 242 (376)
Q Consensus 239 ~l~~ 242 (376)
.+..
T Consensus 104 ~~~~ 107 (217)
T cd00331 104 ALDD 107 (217)
T ss_pred cCCH
Confidence 7643
No 277
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.86 E-value=0.13 Score=48.37 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=87.3
Q ss_pred hhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017148 57 FLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 57 ~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
+.+.+..+.|+++ +...| .-.|++++++|+|.|=+- .....+. -+|-..+.-..+.+...+++|++....|
T Consensus 7 ~~~~~~~g~~i~m-~tayD----~~sA~i~~~aG~d~ilvG--dSlgm~~--lG~~~t~~vtldem~~h~~aV~rg~~~~ 77 (263)
T TIGR00222 7 LLQKKKQEEKIVA-ITAYD----YSFAKLFADAGVDVILVG--DSLGMVV--LGHDSTLPVTVADMIYHTAAVKRGAPNC 77 (263)
T ss_pred HHHHHhCCCcEEE-EeccC----HHHHHHHHHcCCCEEEEC--ccHhHHh--cCCCCCCCcCHHHHHHHHHHHHhhCCCc
Confidence 3344445555543 34444 247788999999999753 2222211 1233334456788888889998875444
Q ss_pred EEE-EecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE----
Q 017148 137 VSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT---- 211 (376)
Q Consensus 137 v~v-KiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi---- 211 (376)
+.| .+..+.. .+.++.++.+.++++++|+++|.+-++... .+.++.+.+. .|||+
T Consensus 78 ~vv~DmPf~sy--~~~e~a~~na~rl~~eaGa~aVkiEgg~~~----------------~~~i~~l~~~--gIpV~gHiG 137 (263)
T TIGR00222 78 LIVTDLPFMSY--ATPEQALKNAARVMQETGANAVKLEGGEWL----------------VETVQMLTER--GVPVVGHLG 137 (263)
T ss_pred eEEeCCCcCCC--CCHHHHHHHHHHHHHHhCCeEEEEcCcHhH----------------HHHHHHHHHC--CCCEEEecC
Confidence 332 3333322 125566666677888899999999885311 2344444443 78888
Q ss_pred -----Ee--cCC----CCHHHHHH-------HHHcCcCeeEE
Q 017148 212 -----LN--GGI----NTVDEVNA-------ALRKGAHHVMV 235 (376)
Q Consensus 212 -----~n--GgI----~s~~da~~-------~l~~Gad~Vmi 235 (376)
++ ||. .+.+.+.+ +.+.||+++.+
T Consensus 138 ltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivl 179 (263)
T TIGR00222 138 LTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVL 179 (263)
T ss_pred CCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 33 543 24444333 33479998876
No 278
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=95.84 E-value=0.11 Score=49.20 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=33.4
Q ss_pred CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 206 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 206 ~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+++||.+.||| +++.+.+..++|+|++.+|.-...-|++
T Consensus 226 ~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~~~~ 264 (269)
T cd01568 226 PRVLLEASGGI-TLENIRAYAETGVDVISTGALTHSAPAL 264 (269)
T ss_pred CCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHHcCCCcc
Confidence 57999999999 7999999999999999998666666664
No 279
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.82 E-value=0.42 Score=45.88 Aligned_cols=143 Identities=13% Similarity=0.177 Sum_probs=74.6
Q ss_pred HHHHHHHHCCCCEEEecCC-------CCCccccCCCCccccccCC-------HH-HHHHHHHHHhcccCccEEEEecCCC
Q 017148 81 KATELANAYNYDEINLNCG-------CPSPKVAGHGCFGVSLMLD-------PK-FVGEAMSVIAANTNVPVSVKCRIGV 145 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~g-------cP~~~v~r~g~yG~~l~~~-------~~-~~~eiv~~v~~~~~~pv~vKiR~g~ 145 (376)
+.++.+.+.||.+|.+-.- -|.+...+.. .++.|. .+ .+.++.+. ++..+.|+.+-+.-
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~---~~~~n~~g~~~~g~~~~~~~~~~~-~~~~~~p~i~si~g-- 100 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP---GGMLNAIGLQNPGVDAFIEEELPW-LEEFDTPIIANVAG-- 100 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecC---CceeecCCCCCcCHHHHHHHHHHH-HhccCCcEEEEecc--
Confidence 4555566789999988543 3333333222 233332 23 33333333 33447888887753
Q ss_pred CCCccHHHHHHHHHHHhhcCC-ccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE--ecCCCCHHHH
Q 017148 146 DDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEV 222 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~G-vd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da 222 (376)
. +.++..+. ++.++++| +|+|.++.......+ ++......+....+.+.++++.. ++||+. +.++.+..++
T Consensus 101 ~---~~~~~~~~-a~~~~~aG~~D~iElN~~cP~~~~-gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~ 174 (301)
T PRK07259 101 S---TEEEYAEV-AEKLSKAPNVDAIELNISCPNVKH-GGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEI 174 (301)
T ss_pred C---CHHHHHHH-HHHHhccCCcCEEEEECCCCCCCC-CccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHH
Confidence 2 23444443 44557888 999998543221110 01110111122245566665544 889876 3345455555
Q ss_pred HHHHH-cCcCeeEE
Q 017148 223 NAALR-KGAHHVMV 235 (376)
Q Consensus 223 ~~~l~-~Gad~Vmi 235 (376)
.+.++ .|+|++.+
T Consensus 175 a~~l~~~G~d~i~~ 188 (301)
T PRK07259 175 AKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHcCCCEEEE
Confidence 55555 89999865
No 280
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.82 E-value=0.26 Score=47.23 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=57.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
-.|+.++++||++|=+...+=.......|. | + -..+.+.+.++.|.+.+++||++-+-.|+-+..++.+++ .
T Consensus 26 lSAri~e~aGf~ai~~ss~~va~slG~pD~-g--~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV---~- 97 (290)
T TIGR02321 26 LVAKLAEQAGFGGIWGSGFELSASYAVPDA-N--I-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVV---P- 97 (290)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHCCCCCc-c--c-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHH---H-
Confidence 367888999999997754221100011221 2 2 256677888888898999999999999987654444433 2
Q ss_pred HhhcCCccEEEEcc
Q 017148 161 VSSLSPTRHFIIHS 174 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~ 174 (376)
.++++|+..|++--
T Consensus 98 ~~~~aGvagi~IED 111 (290)
T TIGR02321 98 QYEAAGASAIVMED 111 (290)
T ss_pred HHHHcCCeEEEEeC
Confidence 34579999999954
No 281
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.81 E-value=0.19 Score=46.78 Aligned_cols=131 Identities=8% Similarity=0.012 Sum_probs=81.0
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
-.|+.++++|||.|=+........ .| |=....-..+.+...+++|++.+. .||++-+-.|+... .++..+.+.
T Consensus 23 ~sA~i~e~aG~dai~v~~s~~a~~---~G-~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~--~~~~~~~~~ 96 (240)
T cd06556 23 SMAKQFADAGLNVMLVGDSQGMTV---AG-YDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGA--PTAAFELAK 96 (240)
T ss_pred HHHHHHHHcCCCEEEEChHHHHHh---cC-CCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcC--HHHHHHHHH
Confidence 367888899999998854322110 01 111112356788888888888875 79999998887652 234555445
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC---------------CHHHHHH
Q 017148 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN---------------TVDEVNA 224 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~---------------s~~da~~ 224 (376)
++. ++|++.|++-+... ..+.+..+++. .+||++==|.. +.+++++
T Consensus 97 ~l~-~aGa~gv~iED~~~----------------~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ 157 (240)
T cd06556 97 TFM-RAGAAGVKIEGGEW----------------HIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQ 157 (240)
T ss_pred HHH-HcCCcEEEEcCcHH----------------HHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHH
Confidence 554 59999999987421 02344555543 57888765552 1233333
Q ss_pred H-------HHcCcCeeEEc
Q 017148 225 A-------LRKGAHHVMVG 236 (376)
Q Consensus 225 ~-------l~~Gad~VmiG 236 (376)
+ .+.|||+|.+=
T Consensus 158 ai~Ra~ay~~AGAd~i~~e 176 (240)
T cd06556 158 LIADALAYAPAGADLIVME 176 (240)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 2 34799999984
No 282
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.81 E-value=0.13 Score=49.23 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=53.2
Q ss_pred HHHHHHHHC---------CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017148 81 KATELANAY---------NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 81 ~aa~~~~~~---------G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
-.|+.++++ ||++|=+...+=.......|. | ++ ..+.+.+.++.|...+++||++-+-.| .+..++
T Consensus 20 ~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~-~--~~-~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v 94 (285)
T TIGR02320 20 LSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDI-E--EA-SWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHF 94 (285)
T ss_pred HHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCc-C--cC-CHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHH
Confidence 366778888 999998754322111111221 2 22 455666778888888899999988887 443333
Q ss_pred HHHHHHHHHHhhcCCccEEEEc
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
.++ +.+ ++++|+..|++-
T Consensus 95 ~r~---V~~-l~~aGvaGi~iE 112 (285)
T TIGR02320 95 RRL---VRK-LERRGVSAVCIE 112 (285)
T ss_pred HHH---HHH-HHHcCCeEEEEe
Confidence 333 333 457999999994
No 283
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.79 E-value=0.41 Score=45.13 Aligned_cols=156 Identities=10% Similarity=0.114 Sum_probs=83.6
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecc-cccccc---hhhhhhc----c-CCCCCCEEE-Ee--cCC-CHHHHHH-H
Q 017148 17 MDWTDNHYRTLARLISKHAWLYTEMLAAET-IIYQQG---NLDRFLA----F-SPEQHPIVL-QI--GGS-NLDNLAK-A 82 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~-~~~~~~---~~~~~~~----~-~~~~~p~~v-QL--~g~-~~~~~~~-a 82 (376)
.+.-|.....++.+.| ++.+.|.-..... +.+.+. ..+.++. + .....++++ .+ .+. ++++..+ +
T Consensus 20 ~tayD~~sA~i~~~aG-~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na 98 (263)
T TIGR00222 20 ITAYDYSFAKLFADAG-VDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNA 98 (263)
T ss_pred EeccCHHHHHHHHHcC-CCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHH
Confidence 3566888888888876 8888776222211 111111 1111111 1 112334443 21 121 3655444 4
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEE---------EEecCCCC----CCc
Q 017148 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVS---------VKCRIGVD----DHD 149 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~---------vKiR~g~~----~~~ 149 (376)
.+.++++|+++|.|-.| ..+.+.++.+.+ .++||. +..-.|+. +.+
T Consensus 99 ~rl~~eaGa~aVkiEgg--------------------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~~ 157 (263)
T TIGR00222 99 ARVMQETGANAVKLEGG--------------------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDEE 157 (263)
T ss_pred HHHHHHhCCeEEEEcCc--------------------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCHH
Confidence 55567799999988532 223455555543 366766 44222221 112
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017148 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
..+++++. ++.++++|++.|.+-+-. -+..+++.++. ++|+|+-|
T Consensus 158 ~a~~~i~~-A~a~e~AGA~~ivlE~vp------------------~~~a~~It~~l-~iP~iGIG 202 (263)
T TIGR00222 158 AAKKLLED-ALALEEAGAQLLVLECVP------------------VELAAKITEAL-AIPVIGIG 202 (263)
T ss_pred HHHHHHHH-HHHHHHcCCCEEEEcCCc------------------HHHHHHHHHhC-CCCEEeec
Confidence 34455554 456789999999987532 24445666664 89998765
No 284
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.79 E-value=0.15 Score=48.21 Aligned_cols=124 Identities=14% Similarity=0.084 Sum_probs=73.0
Q ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EE
Q 017148 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VS 138 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~ 138 (376)
.+..+.|+++ +...|. -.|++++++|||.|=. |.....+. .| |-....-..+.+...+++|++.++.| |.
T Consensus 10 ~~~~g~~i~~-~tayD~----~sArl~e~aG~d~i~v--Gds~~~~~-lG-~~Dt~~vtl~em~~h~~~V~r~~~~p~vv 80 (264)
T PRK00311 10 MKQEGEKIVM-LTAYDY----PFAKLFDEAGVDVILV--GDSLGMVV-LG-YDSTLPVTLDDMIYHTKAVARGAPRALVV 80 (264)
T ss_pred HHhCCCCEEE-EeCCCH----HHHHHHHHcCCCEEEE--CHHHHHHH-cC-CCCCCCcCHHHHHHHHHHHHhcCCCCcEE
Confidence 3344555532 334443 4678899999999954 32221111 11 12222345677888888888888776 66
Q ss_pred EEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017148 139 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 139 vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+-+..|-.. .+.++.++...++++++|+++|.+-++.. ..+.++.+++. +|||+
T Consensus 81 aD~pfg~y~-~~~~~av~~a~r~~~~aGa~aVkiEdg~~----------------~~~~I~al~~a--gIpV~ 134 (264)
T PRK00311 81 ADMPFGSYQ-ASPEQALRNAGRLMKEAGAHAVKLEGGEE----------------VAETIKRLVER--GIPVM 134 (264)
T ss_pred EeCCCCCcc-CCHHHHHHHHHHHHHHhCCeEEEEcCcHH----------------HHHHHHHHHHC--CCCEe
Confidence 666433111 34455555566777789999999987521 03445555543 78887
No 285
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.78 E-value=0.035 Score=51.09 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=56.4
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH--cCcCeeEEch
Q 017148 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGR 237 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~--~Gad~VmiGR 237 (376)
+.+.+.|+|.|++--=.... |. +.+.+.+.++.++ +||..-|||+|.+|+++++. .+||-|.+|+
T Consensus 43 ~~~~~~g~~~l~ivDLd~~~-~~---------~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 43 KVIEEIGARFIYIADLDRIV-GL---------GDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred HHHHHcCCCEEEEEEccccc-CC---------cchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 34457899999875322211 21 1237788888775 48999999999999999965 3699999999
Q ss_pred HHhhCCchhh
Q 017148 238 AAYQNPWYTL 247 (376)
Q Consensus 238 a~l~~P~lf~ 247 (376)
.++.||.++.
T Consensus 110 ~a~~~p~~l~ 119 (221)
T TIGR00734 110 ETLDITELLR 119 (221)
T ss_pred hhhCCHHHHH
Confidence 9999999753
No 286
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.77 E-value=0.47 Score=44.74 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=66.1
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEE-EccCccccCCCCCCCCCCC
Q 017148 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRTI 190 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~-vh~r~~~~~g~~~~~~~~~ 190 (376)
|+..+.+.+++..+ . .++.||.+|.-.. .+++++...+..+ .+.|..-|. +|.++..+.+. ..
T Consensus 115 ~s~~~~n~~LL~~~----a-~~gkPVilk~G~~----~t~~e~~~Ave~i-~~~Gn~~i~l~~rG~s~y~~~------~~ 178 (260)
T TIGR01361 115 GARNMQNFELLKEV----G-KQGKPVLLKRGMG----NTIEEWLYAAEYI-LSSGNGNVILCERGIRTFEKA------TR 178 (260)
T ss_pred CcccccCHHHHHHH----h-cCCCcEEEeCCCC----CCHHHHHHHHHHH-HHcCCCcEEEEECCCCCCCCC------Cc
Confidence 66677777755443 2 3589999996653 1344555444444 457875444 47655433221 11
Q ss_pred CcccHHHHHHHHhhCCCCeEEE-ecCCCC-----HHHHHHHHHcCcCeeEEch
Q 017148 191 PPLKYEYYYALLRDFPDLTFTL-NGGINT-----VDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~-nGgI~s-----~~da~~~l~~Gad~VmiGR 237 (376)
..+++..+..+++.+ ++||+. .+-... ...+..++..||||++|=+
T Consensus 179 ~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~ 230 (260)
T TIGR01361 179 NTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEV 230 (260)
T ss_pred CCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEe
Confidence 234577777777665 899999 333333 4555667778999998754
No 287
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.72 E-value=0.3 Score=44.41 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=72.1
Q ss_pred HHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC-CCCCccHHHHHHHHHHHh
Q 017148 84 ELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-VDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 84 ~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g-~~~~~~~~~~~~~i~~~~ 162 (376)
+.+.++|+|.|-+|.-+ | .+.+.++++.+++. +.++.+-+-+. +.....+.+.++.+..+.
T Consensus 74 ~~~~~~gad~vtvh~e~-----------g------~~~l~~~i~~~~~~-g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~ 135 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFT-----------G------RDSLKAVVEAAAES-GGKVFVVVEMSHPGALEFIQPHADKLAKLA 135 (215)
T ss_pred HHHHhCCCCEEEEcCcC-----------C------HHHHHHHHHHHHhc-CCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 55667899999998532 1 12355667776653 45554433222 222233334455556666
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCH-HHHHHHHHcCcCeeEEchHHh
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l 240 (376)
.+.|.+...+.... .+.+.++.+... ++. +..|||... ..+.++++.|+|++.+||+++
T Consensus 136 ~e~G~~g~~~~~~~------------------~~~i~~l~~~~~~~~~-ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~ 196 (215)
T PRK13813 136 QEAGAFGVVAPATR------------------PERVRYIRSRLGDELK-IISPGIGAQGGKAADAIKAGADYVIVGRSIY 196 (215)
T ss_pred HHhCCCeEEECCCc------------------chhHHHHHHhcCCCcE-EEeCCcCCCCCCHHHHHHcCCCEEEECcccC
Confidence 67887765432200 222334433332 233 377999864 257788889999999999988
Q ss_pred hCCc
Q 017148 241 QNPW 244 (376)
Q Consensus 241 ~~P~ 244 (376)
..+.
T Consensus 197 ~~~d 200 (215)
T PRK13813 197 NAAD 200 (215)
T ss_pred CCCC
Confidence 7665
No 288
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.0061 Score=59.96 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=89.6
Q ss_pred EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc
Q 017148 94 INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 94 IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
.++|.+||..+....+. +.+++..+..+.++.+..++..+.|+ .|.|+-.+..+++ .+ ++-+++.+ .+.+|
T Consensus 290 ~~~~~~~p~~~~~~~~~-~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~----~~-~~~le~~~--~l~i~ 360 (477)
T KOG2334|consen 290 RGIQEGCPRGKRIQAAQ-TVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTV----NL-AERLEDLS--ALAIH 360 (477)
T ss_pred hhhhccCchhhHhhcch-hHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhh----hH-hhhHHhcc--chhhh
Confidence 46688899876555444 77788888888888888888888888 8889865543332 22 22345565 56688
Q ss_pred cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchh
Q 017148 174 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 174 ~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
+|....+-..++. |+......... .++++.||.+....+- ...++..||..|+...+-.+|
T Consensus 361 ~r~~f~r~~~pa~--------~~~~k~~l~~~-~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~ 421 (477)
T KOG2334|consen 361 GRKIFDRPTDPAK--------WDTPKMVLADL-CVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIW 421 (477)
T ss_pred hcccccccCCCcC--------CCCHHHHHHHh-hhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhcccc
Confidence 8765444333333 33333444343 7899999999887774 346788899999998777665
No 289
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=95.64 E-value=1.4 Score=42.05 Aligned_cols=148 Identities=11% Similarity=0.181 Sum_probs=91.5
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017148 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
.|+++.|=+. +.+ .+..+.++||+-|-+-.+ --.+..+.+...++++-... .+++|-.-+-
T Consensus 78 VPV~lHLDHg~~~e----~i~~ai~~GftSVM~DgS------------~lp~eeNi~~Trevv~~Ah~-~gv~VEaElG~ 140 (285)
T PRK07709 78 VPVAIHLDHGSSFE----KCKEAIDAGFTSVMIDAS------------HHPFEENVETTKKVVEYAHA-RNVSVEAELGT 140 (285)
T ss_pred CcEEEECCCCCCHH----HHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEEec
Confidence 3666666443 322 223444556666655422 11233556677777776553 3555443321
Q ss_pred C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017148 143 I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 143 ~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+ |.++ ..+.++..+|+ ++.|+|.+.|.-++.. |++ .+.++++.+.++.+.. ++|++
T Consensus 141 igg~ed~~~~~~~~yT~peeA~~Fv----~~TgvD~LAvaiGt~HG~Y~~--------~p~L~~~~L~~I~~~~-~iPLV 207 (285)
T PRK07709 141 VGGQEDDVIAEGVIYADPAECKHLV----EATGIDCLAPALGSVHGPYKG--------EPNLGFAEMEQVRDFT-GVPLV 207 (285)
T ss_pred cCCccCCcccccccCCCHHHHHHHH----HHhCCCEEEEeecccccCcCC--------CCccCHHHHHHHHHHH-CCCEE
Confidence 1 2211 13466666554 4789999999877642 222 2457799999988765 99999
Q ss_pred EecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017148 212 LNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 212 ~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.-|+--.+ +++.++++.|+.=|=|++.+-..
T Consensus 208 LHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 239 (285)
T PRK07709 208 LHGGTGIPTADIEKAISLGTSKINVNTENQIE 239 (285)
T ss_pred EeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 99987766 67888888999999999887443
No 290
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.63 E-value=0.064 Score=53.84 Aligned_cols=76 Identities=11% Similarity=-0.012 Sum_probs=53.2
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC--------CCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--------PDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--------~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
++.|+|+|.+..-..... +. ...++..++.+.++.+.. .++||++-||| +.+++.+++++||++|.
T Consensus 317 ~~~gaDYI~lGPIFpT~T----K~-~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVA 390 (437)
T PRK12290 317 VQIQPSYIALGHIFPTTT----KQ-MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLA 390 (437)
T ss_pred hhcCCCEEEECCccCCCC----CC-CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 358999998865322100 00 112344466665544432 37999999999 99999999999999999
Q ss_pred EchHHhhCCc
Q 017148 235 VGRAAYQNPW 244 (376)
Q Consensus 235 iGRa~l~~P~ 244 (376)
+=|++...++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999987665
No 291
>PRK02227 hypothetical protein; Provisional
Probab=95.62 E-value=0.29 Score=45.23 Aligned_cols=129 Identities=17% Similarity=0.068 Sum_probs=69.9
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017148 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
|..+.+.|+|.||+ |.-..|.-|+ +.|..+.+|++.+... .|++..+---..+..++ ...+..+
T Consensus 13 A~~Al~~GaDiIDv-------K~P~~GaLGA---~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~---~~aa~~~- 76 (238)
T PRK02227 13 ALEALAGGADIIDV-------KNPKEGSLGA---NFPWVIREIVAAVPGR--KPVSATIGDVPYKPGTI---SLAALGA- 76 (238)
T ss_pred HHHHHhcCCCEEEc-------cCCCCCCCCC---CCHHHHHHHHHHhCCC--CCceeeccCCCCCchHH---HHHHHHH-
Confidence 34466789999999 3344566664 6788888888887754 57777543211121222 2222222
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHH---Hh-hCCCCeEEEecCCC-------CHHHHHHHHH-cCc
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LR-DFPDLTFTLNGGIN-------TVDEVNAALR-KGA 230 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~---~~-~~~~ipVi~nGgI~-------s~~da~~~l~-~Ga 230 (376)
..+|+|+|-|--- +.... .-..+.+..+ .+ ..++..|++++=-. ++.++.+... .|+
T Consensus 77 a~~GvDyVKvGl~-----~~~~~------~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf 145 (238)
T PRK02227 77 AATGADYVKVGLY-----GGKTA------EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGF 145 (238)
T ss_pred HhhCCCEEEEcCC-----CCCcH------HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCC
Confidence 3589999886321 10000 0012222222 22 22356677665222 4455555554 999
Q ss_pred CeeEEchH
Q 017148 231 HHVMVGRA 238 (376)
Q Consensus 231 d~VmiGRa 238 (376)
|++|+=++
T Consensus 146 ~g~MlDTa 153 (238)
T PRK02227 146 DGAMLDTA 153 (238)
T ss_pred CEEEEecc
Confidence 99999554
No 292
>PRK08999 hypothetical protein; Provisional
Probab=95.60 E-value=0.049 Score=52.57 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=50.3
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
.+.|+|+|.+..--... + + +..++..++.+.++++.. ++||++-||| +.+++.+++++|+|+|.+-+++
T Consensus 243 ~~~~~dyi~~gpvf~t~---t-k--~~~~~~g~~~~~~~~~~~-~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 243 QRLGVDFAVLSPVQPTA---S-H--PGAAPLGWEGFAALIAGV-PLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred HhcCCCEEEECCCcCCC---C-C--CCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence 35799999987532210 0 0 012345577777776654 8999999999 9999999999999999987764
No 293
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.60 E-value=0.084 Score=51.35 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCC--ccEEEEccCccccCCCCCCCCCCCCcccH
Q 017148 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP--TRHFIIHSRKALLNGISPAENRTIPPLKY 195 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~G--vd~I~vh~r~~~~~g~~~~~~~~~~~~~~ 195 (376)
+++...+.++.++ +..+.|-+..|... +..+++ ..++ ++| +|.|.|..-. |.+. ...
T Consensus 70 ~~e~~~~~~r~~~---~~~l~v~~~vg~~~-~~~~~~----~~Lv-~ag~~~d~i~iD~a~----gh~~--------~~~ 128 (326)
T PRK05458 70 DPEARIPFIKDMH---EQGLIASISVGVKD-DEYDFV----DQLA-AEGLTPEYITIDIAH----GHSD--------SVI 128 (326)
T ss_pred CHHHHHHHHHhcc---ccccEEEEEecCCH-HHHHHH----HHHH-hcCCCCCEEEEECCC----CchH--------HHH
Confidence 4555555554432 22334555555433 223332 2333 465 4999994322 1110 115
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++++++.+|++||| .|+|.|.+++..+.+.|||++.+|
T Consensus 129 e~I~~ir~~~p~~~vi-~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 129 NMIQHIKKHLPETFVI-AGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhhCCCCeEE-EEecCCHHHHHHHHHcCcCEEEEC
Confidence 6678888888777654 577889999999999999999877
No 294
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.53 E-value=0.31 Score=48.02 Aligned_cols=132 Identities=10% Similarity=-0.017 Sum_probs=85.7
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecC
Q 017148 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~ 143 (376)
|+-..+...+++.+.+.++...+.||..+-+..|- .+++.-.+.++++|+.++ +.+.+-.--
T Consensus 132 ~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~----------------~~~~~d~~~v~air~~~g~~~~l~vDaN~ 195 (355)
T cd03321 132 QAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY----------------PTADEDLAVVRSIRQAVGDGVGLMVDYNQ 195 (355)
T ss_pred eEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC----------------CChHhHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 44444444467777777776667799888664321 234555678889998774 445444433
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017148 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+ .++.++++ +.+++.++++|.= .+++.+++..+++.+.. ++||.+.-.+.++.++.
T Consensus 196 ~~~----~~~A~~~~-~~l~~~~i~~iEe----------------P~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~~ 253 (355)
T cd03321 196 SLT----VPEAIERG-QALDQEGLTWIEE----------------PTLQHDYEGHARIASAL-RTPVQMGENWLGPEEMF 253 (355)
T ss_pred CcC----HHHHHHHH-HHHHcCCCCEEEC----------------CCCCcCHHHHHHHHHhc-CCCEEEcCCCcCHHHHH
Confidence 343 34555544 3456788887761 11222366677777664 89999988899999999
Q ss_pred HHHH-cCcCeeEE
Q 017148 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
++++ ..+|.|++
T Consensus 254 ~~i~~~~~d~i~~ 266 (355)
T cd03321 254 KALSAGACDLVMP 266 (355)
T ss_pred HHHHhCCCCeEec
Confidence 9998 56888766
No 295
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.50 E-value=0.17 Score=48.09 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=47.3
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+.|+|+|.+.. ...+.+.++++.. +++||.+.||| +.+.+.+..++|+|+|.+|.-...-
T Consensus 206 ~~gaDyI~lD~------------------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 206 AAGADIIMFDN------------------RTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTHSV 266 (277)
T ss_pred HcCCCEEEECC------------------CCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 68999998731 1135555655543 25888899999 9999999999999999999866545
Q ss_pred Cch
Q 017148 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 267 ~~~ 269 (277)
T PRK08072 267 KAL 269 (277)
T ss_pred ccc
Confidence 554
No 296
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=95.50 E-value=0.13 Score=48.80 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=46.8
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+.|+|+|-+-.-. .+.+.++++... ++|+.+.||| +.+.+.++.++|+|++.+|.-...-
T Consensus 200 ~~gaDyI~ld~~~------------------~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 200 EAGADIIMLDNMS------------------PEELREAVALLKGRVLLEASGGI-TLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred HcCCCEEEECCcC------------------HHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeecCC
Confidence 5899999875321 344555554432 6999999999 7999999999999999999865544
Q ss_pred Cc
Q 017148 243 PW 244 (376)
Q Consensus 243 P~ 244 (376)
|+
T Consensus 261 ~~ 262 (268)
T cd01572 261 PA 262 (268)
T ss_pred Cc
Confidence 44
No 297
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=95.49 E-value=0.029 Score=52.46 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=69.5
Q ss_pred CCCCEEEEecCCCH-HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCH---HHHHHHHHHHhcc--cCcc
Q 017148 63 EQHPIVLQIGGSNL-DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDP---KFVGEAMSVIAAN--TNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~g~~~-~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~---~~~~eiv~~v~~~--~~~p 136 (376)
.+.|++.=+++.|| -++..-.+.+++.||.+|. |+ |..-.. .|.|...|+..- ++=.|+++..++. ...|
T Consensus 80 ~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgli-DG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~ 155 (268)
T PF09370_consen 80 KDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLI-DGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTA 155 (268)
T ss_dssp SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG---HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--
T ss_pred cCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--Ccceee-ccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeee
Confidence 35799999999998 3566677888999999983 54 532111 233333332211 2222334433332 1222
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc--HHHHHHH---Hhh-CCCCeE
Q 017148 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK--YEYYYAL---LRD-FPDLTF 210 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~--~~~v~~~---~~~-~~~ipV 210 (376)
+.. +.++. .+ +.++|+|.|.+|-+... +|..+... ...+. .+.+.++ +++ .+++-+
T Consensus 156 yvf----------~~e~A----~~-M~~AGaDiiv~H~GlT~-gG~~Ga~~--~~sl~~a~~~~~~i~~aa~~v~~dii~ 217 (268)
T PF09370_consen 156 YVF----------NEEQA----RA-MAEAGADIIVAHMGLTT-GGSIGAKT--ALSLEEAAERIQEIFDAARAVNPDIIV 217 (268)
T ss_dssp EE-----------SHHHH----HH-HHHHT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT-EE
T ss_pred eec----------CHHHH----HH-HHHcCCCEEEecCCccC-CCCcCccc--cCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 211 12232 12 23699999999965321 33222211 11111 1122222 222 245555
Q ss_pred EEe-cCCCCHHHHHHHHH-c-CcCeeEEchHH
Q 017148 211 TLN-GGINTVDEVNAALR-K-GAHHVMVGRAA 239 (376)
Q Consensus 211 i~n-GgI~s~~da~~~l~-~-Gad~VmiGRa~ 239 (376)
+.- |-|.+|+|++.+++ + ||+|..=|..+
T Consensus 218 l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 218 LCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp EEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred EEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 544 55999999999998 4 58987766553
No 298
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.41 E-value=1.8 Score=41.32 Aligned_cols=112 Identities=16% Similarity=0.244 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHhcccCccEEEEec-C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCC
Q 017148 116 MLDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNG 181 (376)
Q Consensus 116 ~~~~~~~~eiv~~v~~~~~~pv~vKiR-~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g 181 (376)
..+.+...++++-.+.. ++.|-.-+- + |.++ ..+.++..+|+ ++.|+|++.|.-+|.. |.+
T Consensus 111 eeNi~~T~~vv~~Ah~~-gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv----~~TgvD~LAvaiGt~HG~y~~ 185 (284)
T PRK12737 111 EENIAIVKEVVEFCHRY-DASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFV----ERTGIDSLAVAIGTAHGLYKG 185 (284)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH----HHhCCCEEeeccCccccccCC
Confidence 35566777777766542 444332221 1 1111 12456665554 4689999999877642 222
Q ss_pred CCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-HHHHHHHHcCcCeeEEchHHhh
Q 017148 182 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~ 241 (376)
.|.++++.++++.+.. ++|++.-||=-.+ +++.++++.|+.=|=|++.+..
T Consensus 186 --------~p~Ld~~~L~~I~~~~-~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 186 --------EPKLDFERLAEIREKV-SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKI 237 (284)
T ss_pred --------CCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHH
Confidence 2457799999997764 8999988876655 5677888899999999998754
No 299
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=95.41 E-value=0.19 Score=47.50 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=57.4
Q ss_pred HHHHHHhcccC--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHH
Q 017148 124 EAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL 201 (376)
Q Consensus 124 eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~ 201 (376)
.-++.+|+..+ .++.+-+ ++++++.+ +.+.|+|+|-+..-. .+.++++
T Consensus 166 ~av~~~r~~~~~~~~Igvev-------~t~eea~~-----A~~~gaDyI~ld~~~------------------~e~lk~~ 215 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEV-------ESLEEAEE-----AAEAGADIIMLDNMK------------------PEEIKEA 215 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEe-------CCHHHHHH-----HHHcCCCEEEECCCC------------------HHHHHHH
Confidence 34555666543 3444432 24555433 236899999875422 2334444
Q ss_pred HhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 202 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 202 ~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
++.. ..+||.+.||| +.+.+.+..++|+|++.+|.-...-|++
T Consensus 216 v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait~sa~~~ 259 (265)
T TIGR00078 216 VQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISSGALTHSVPAL 259 (265)
T ss_pred HHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHHcCCCcc
Confidence 4432 14899999999 7999999999999999995443334553
No 300
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.38 E-value=0.4 Score=44.92 Aligned_cols=149 Identities=18% Similarity=0.258 Sum_probs=88.1
Q ss_pred CCCCEEEEecCCC---H----HHHHHHHHHHHHCCCCEEEe--cCCCCCccccCCCCccccccCCHHHHHHHHHHHhc--
Q 017148 63 EQHPIVLQIGGSN---L----DNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-- 131 (376)
Q Consensus 63 ~~~p~~vQL~g~~---~----~~~~~aa~~~~~~G~d~Iei--N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-- 131 (376)
.+.|++++|.+++ + +.+....+-+..+|+|+|-. |.|+.. +.+.+.++-+.+..
T Consensus 76 ~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~---------------e~~~i~~~~~v~~~a~ 140 (265)
T COG1830 76 HDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSET---------------EREMIENISQVVEDAH 140 (265)
T ss_pred CCcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcc---------------hHHHHHHHHHHHHHHH
Confidence 3678999998762 2 22223345566788888755 444332 23444444443332
Q ss_pred ccCccEEEEec-CCCCCC---ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017148 132 NTNVPVSVKCR-IGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 132 ~~~~pv~vKiR-~g~~~~---~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
..+.|+.+=+- .|.... +...+.....+++..+.|+|.|-+-- .| +.+-++++++..+
T Consensus 141 ~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~y-----tg------------~~e~F~~vv~~~~- 202 (265)
T COG1830 141 ELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKY-----TG------------DPESFRRVVAACG- 202 (265)
T ss_pred HcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecC-----CC------------ChHHHHHHHHhCC-
Confidence 24788766322 222221 22234455556777789999887431 11 1244566777665
Q ss_pred CeEEEecCCCC--HHHHH----HHHHcCcCeeEEchHHhhCCc
Q 017148 208 LTFTLNGGINT--VDEVN----AALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 208 ipVi~nGgI~s--~~da~----~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+||+..||=.+ .+++. .+++.|+.|+.+||=+...|.
T Consensus 203 vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~ 245 (265)
T COG1830 203 VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED 245 (265)
T ss_pred CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC
Confidence 99999999776 33444 445589999999998877665
No 301
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.37 E-value=0.21 Score=47.28 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=92.9
Q ss_pred ccCCCCCCEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccE
Q 017148 59 AFSPEQHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPV 137 (376)
Q Consensus 59 ~~~~~~~p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv 137 (376)
..+..+.|+ |+-| .|+ -.|++++++||+++=+..+.=.......|. |- -..+.+.+.++.|.+.+++||
T Consensus 12 ~l~~~~~~~--~~pg~~d~----~sA~la~~aGF~al~~sg~~vA~slG~pD~-~~---~t~~e~~~~vrrI~~a~~lPv 81 (289)
T COG2513 12 ALHASGDPL--VLPGAWDA----GSALLAERAGFKALYLSGAGVAASLGLPDL-GI---TTLDEVLADARRITDAVDLPV 81 (289)
T ss_pred HHHhCCCCE--EecCCcCH----HHHHHHHHcCCeEEEeccHHHHHhcCCCcc-cc---ccHHHHHHHHHHHHhhcCCce
Confidence 444455544 3433 233 378889999999998864311111111221 21 225778888889999999999
Q ss_pred EEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcc-ccCCCCCCCCCCCCccc--HHHHHHHHhhCCCCeEEEec
Q 017148 138 SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK--YEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 138 ~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~-~~~g~~~~~~~~~~~~~--~~~v~~~~~~~~~ipVi~nG 214 (376)
+|-+-.|+-+..+..+++ . .++++|+..+++---.. ..-|+- ++..+.+.. .+.|+.+++..++.+++.+.
T Consensus 82 ~vD~dtGfG~~~nvartV---~-~~~~aG~agi~iEDq~~pk~cgh~--~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A 155 (289)
T COG2513 82 LVDIDTGFGEALNVARTV---R-ELEQAGAAGIHIEDQVGPKRCGHL--PGKELVSIDEMVDRIKAAVEARRDPDFVIIA 155 (289)
T ss_pred EEeccCCCCcHHHHHHHH---H-HHHHcCcceeeeeecccchhcCCC--CCCCcCCHHHHHHHHHHHHHhccCCCeEEEe
Confidence 999999987744444443 3 34679999999853221 111221 111222211 23344444444444444442
Q ss_pred CCCC-----HHH----HHHHHHcCcCeeEEchHHhhCCchh
Q 017148 215 GINT-----VDE----VNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 215 gI~s-----~~d----a~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
.... .++ +..+.+.|||++.. ..+.++..|
T Consensus 156 RTda~~~~~ld~AI~Ra~AY~eAGAD~if~--~al~~~e~i 194 (289)
T COG2513 156 RTDALLVEGLDDAIERAQAYVEAGADAIFP--EALTDLEEI 194 (289)
T ss_pred ehHHHHhccHHHHHHHHHHHHHcCCcEEcc--ccCCCHHHH
Confidence 2211 233 23344589998764 455666654
No 302
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.35 E-value=0.058 Score=54.99 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=47.6
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.++|+|.|.|.... |.+. ..++.++++++.++++||++ |+|.|.+++..+++.|||+|-+|
T Consensus 233 ~~aG~d~I~vd~a~----g~~~--------~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 233 VKAGVDVIVIDSSH----GHSI--------YVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHhCCCEEEEECCC----CcHh--------HHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 36999999985422 1110 12677888888888999988 99999999999999999999755
No 303
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.28 E-value=0.15 Score=49.52 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCC--ccEEEEccCccccCCCCCCCCCCCCcccH
Q 017148 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP--TRHFIIHSRKALLNGISPAENRTIPPLKY 195 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~G--vd~I~vh~r~~~~~g~~~~~~~~~~~~~~ 195 (376)
+++...+.++.++.. .+ .+-+..|..+ ++.+.+ ..+. ++| +|.|.+..-. |++. .-+
T Consensus 67 ~~E~~~sfvrk~k~~-~L--~v~~SvG~t~-e~~~r~----~~lv-~a~~~~d~i~~D~ah----g~s~--------~~~ 125 (321)
T TIGR01306 67 DEESRIPFIKDMQER-GL--FASISVGVKA-CEYEFV----TQLA-EEALTPEYITIDIAH----GHSN--------SVI 125 (321)
T ss_pred CHHHHHHHHHhcccc-cc--EEEEEcCCCH-HHHHHH----HHHH-hcCCCCCEEEEeCcc----CchH--------HHH
Confidence 455544445544322 23 4445555544 223333 3333 467 6988875321 1111 115
Q ss_pred HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 196 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 196 ~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++.+++.+ ..|++..|.|.+.+++..+++.|||+|.+|
T Consensus 126 ~~i~~i~~~~-p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 126 NMIKHIKTHL-PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 6677887776 568889999999999999999999999877
No 304
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.25 E-value=0.79 Score=44.76 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=90.0
Q ss_pred CCCEEEEecCCC--------HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccC-CHHHHHHHHHHHhcccC
Q 017148 64 QHPIVLQIGGSN--------LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLML-DPKFVGEAMSVIAANTN 134 (376)
Q Consensus 64 ~~p~~vQL~g~~--------~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~-~~~~~~eiv~~v~~~~~ 134 (376)
+.|+++.|.++. .+......+.+-+.|+|+|-++. . +|+.-+. ..+.+.+++++.. ..+
T Consensus 125 ~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tv-----y------~Gs~~E~~ml~~l~~i~~ea~-~~G 192 (348)
T PRK09250 125 KIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATI-----Y------FGSEESRRQIEEISEAFEEAH-ELG 192 (348)
T ss_pred CCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEE-----e------cCCHHHHHHHHHHHHHHHHHH-HhC
Confidence 567888887642 12233345667788999886653 0 1322111 1233444444432 358
Q ss_pred ccEEEE--ecCC-CCCCc---cHHHHHHHHHHHhhcCCccEEEEccCcc--c-cC-CCCCCCCCCCCcc----cHHHHHH
Q 017148 135 VPVSVK--CRIG-VDDHD---SYNQLCDFIYKVSSLSPTRHFIIHSRKA--L-LN-GISPAENRTIPPL----KYEYYYA 200 (376)
Q Consensus 135 ~pv~vK--iR~g-~~~~~---~~~~~~~~i~~~~e~~Gvd~I~vh~r~~--~-~~-g~~~~~~~~~~~~----~~~~v~~ 200 (376)
+|+.+= -|.. +.+.. +-.+++...+++..+.|+|.|-+---+. . .. ++...+.+...+. .-+.++.
T Consensus 193 lPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~ 272 (348)
T PRK09250 193 LATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRY 272 (348)
T ss_pred CCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHH
Confidence 887762 2321 11211 1235666677888889999998752210 0 00 0000000000011 1234444
Q ss_pred HHhhC--CCCeEEEecCCCC-HH----HHHHH---HHcCcCeeEEchHHhhCCc
Q 017148 201 LLRDF--PDLTFTLNGGINT-VD----EVNAA---LRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 201 ~~~~~--~~ipVi~nGgI~s-~~----da~~~---l~~Gad~VmiGRa~l~~P~ 244 (376)
+++.. ..+||+..||=.. .+ .+.++ ++.|+.||.+||=....|.
T Consensus 273 ~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 273 QVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCc
Confidence 44442 1589999999773 33 34556 6689999999999887775
No 305
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.24 E-value=0.093 Score=48.99 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=55.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.++++|+++|.|-.-....+| +++.+.++++. +++||+..+.|.++.++.++...|||+|.+==+
T Consensus 67 A~~y~~~GA~aISVlTe~~~F~G------------s~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~ 133 (247)
T PRK13957 67 AKTYETLGASAISVLTDQSYFGG------------SLEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFGASAILLIVR 133 (247)
T ss_pred HHHHHHCCCcEEEEEcCCCcCCC------------CHHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcCCCEEEeEHh
Confidence 45567899999988764433333 26777777765 489999999999999999999999999977665
Q ss_pred HhhC
Q 017148 239 AYQN 242 (376)
Q Consensus 239 ~l~~ 242 (376)
+|.+
T Consensus 134 ~L~~ 137 (247)
T PRK13957 134 ILTP 137 (247)
T ss_pred hCCH
Confidence 5543
No 306
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.22 E-value=2.3 Score=40.57 Aligned_cols=149 Identities=15% Similarity=0.240 Sum_probs=93.1
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|++++|=+. +.+ .++++.++||+-|.+-.+ . -.++.+.+...++++..+. .+++|-.-+-
T Consensus 72 ~VPValHLDHg~~~e----~i~~ai~~GFtSVM~DgS-~-----------lp~eeNi~~T~~vv~~Ah~-~gv~VEaElG 134 (282)
T TIGR01858 72 NMPLALHLDHHESLD----DIRQKVHAGVRSAMIDGS-H-----------FPFAQNVKLVKEVVDFCHR-QDCSVEAELG 134 (282)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCEEeecCC-C-----------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEE
Confidence 45677776543 322 345556667777766532 1 1234566777777776554 3444433221
Q ss_pred -C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCC
Q 017148 143 -I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDL 208 (376)
Q Consensus 143 -~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~i 208 (376)
+ |.++ ..+.++..+|+ ++.|+|++.|.-+|.. |++ .|.++++.+.++.+.. ++
T Consensus 135 ~vgg~e~~~~~~~~~~~~T~peea~~Fv----~~TgvD~LAvaiGt~HG~yk~--------~p~Ldf~~L~~I~~~~-~i 201 (282)
T TIGR01858 135 RLGGVEDDLSVDEEDALYTDPQEAKEFV----EATGVDSLAVAIGTAHGLYKK--------TPKLDFDRLAEIREVV-DV 201 (282)
T ss_pred ecCCccCCCccccchhccCCHHHHHHHH----HHHCcCEEecccCccccCcCC--------CCccCHHHHHHHHHHh-CC
Confidence 1 1111 12345655554 4799999999877752 222 2467899999998765 89
Q ss_pred eEEEecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017148 209 TFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 209 pVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|++.-|+--.+ +++.++++.|+.=|=+++.+...
T Consensus 202 PLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 236 (282)
T TIGR01858 202 PLVLHGASDVPDEDVRRTIELGICKVNVATELKIA 236 (282)
T ss_pred CeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 99988876655 56777888999999999987543
No 307
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=95.20 E-value=0.81 Score=43.74 Aligned_cols=146 Identities=11% Similarity=0.188 Sum_probs=90.1
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017148 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
.|+++.|=+. +.+ .++++.++||+-|-+-.+ --.++.+.+...++++-.+. .+++|-.-+-
T Consensus 78 vPV~lHLDHg~~~e----~i~~ai~~GftSVM~DgS------------~l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~ 140 (286)
T PRK08610 78 IPVAIHLDHGSSFE----KCKEAIDAGFTSVMIDAS------------HSPFEENVATTKKVVEYAHE-KGVSVEAELGT 140 (286)
T ss_pred CCEEEECCCCCCHH----HHHHHHHcCCCEEEEeCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEEec
Confidence 4666666443 322 223445556666655421 11234566677777776553 3444433321
Q ss_pred C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017148 143 I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 143 ~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+ |.++ ..+.++..+|+ ++.|+|.+.|.-++.. |++ -+.++++.+.++.+.. ++|++
T Consensus 141 vgg~ed~~~~~~~~yT~peea~~Fv----~~TgvD~LAvaiGt~HG~Y~~--------~p~Ld~~~L~~I~~~~-~vPLV 207 (286)
T PRK08610 141 VGGQEDDVVADGIIYADPKECQELV----EKTGIDALAPALGSVHGPYKG--------EPKLGFKEMEEIGLST-GLPLV 207 (286)
T ss_pred cCCccCCCCCcccccCCHHHHHHHH----HHHCCCEEEeeccccccccCC--------CCCCCHHHHHHHHHHH-CCCEE
Confidence 1 2211 13456665554 4789999999877642 222 1456789999988765 89999
Q ss_pred EecCCCCH-HHHHHHHHcCcCeeEEchHHh
Q 017148 212 LNGGINTV-DEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 212 ~nGgI~s~-~da~~~l~~Gad~VmiGRa~l 240 (376)
.-||=-.+ +++.++++.|+.=|=+++.+-
T Consensus 208 LHGgSG~~~e~~~~ai~~GI~KiNi~T~l~ 237 (286)
T PRK08610 208 LHGGTGIPTKDIQKAIPFGTAKINVNTENQ 237 (286)
T ss_pred EeCCCCCCHHHHHHHHHCCCeEEEeccHHH
Confidence 99987776 667888889998888888763
No 308
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.19 E-value=2.3 Score=40.61 Aligned_cols=147 Identities=14% Similarity=0.246 Sum_probs=89.7
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|++++|=+. +. +.++.+.++||+-|.+-.+ --.++.+.+...++++-.+. .++.|-.-+-
T Consensus 74 ~VPV~lHLDHg~~~----e~i~~Ai~~GftSVM~DgS------------~l~~eeNi~~T~~vv~~Ah~-~gv~VEaElG 136 (284)
T PRK09195 74 HHPLALHLDHHEKF----DDIAQKVRSGVRSVMIDGS------------HLPFAQNISLVKEVVDFCHR-FDVSVEAELG 136 (284)
T ss_pred CCCEEEECCCCCCH----HHHHHHHHcCCCEEEeCCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEEe
Confidence 34566555433 22 2233444566666665421 11234566777777776653 3444433221
Q ss_pred -C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCC
Q 017148 143 -I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDL 208 (376)
Q Consensus 143 -~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~i 208 (376)
+ |-++ ..+.++..+|+ ++.|+|++.|.-+|.. |.+ .+.++++.++++.+.. ++
T Consensus 137 ~vgg~e~~~~~~~~~~~~T~peea~~Fv----~~TgvD~LAvaiGt~HG~y~~--------~p~Ld~~~L~~I~~~~-~v 203 (284)
T PRK09195 137 RLGGQEDDLQVDEADALYTDPAQAREFV----EATGIDSLAVAIGTAHGMYKG--------EPKLDFDRLENIRQWV-NI 203 (284)
T ss_pred cccCcccCcccccccccCCCHHHHHHHH----HHHCcCEEeeccCccccccCC--------CCcCCHHHHHHHHHHh-CC
Confidence 1 1111 12455665554 4789999999877642 222 2457799999998765 89
Q ss_pred eEEEecCCCCH-HHHHHHHHcCcCeeEEchHHh
Q 017148 209 TFTLNGGINTV-DEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 209 pVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l 240 (376)
|++.-|+=-.+ +++.++++.|+.=|=+++.+.
T Consensus 204 PLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 204 PLVLHGASGLPTKDIQQTIKLGICKVNVATELK 236 (284)
T ss_pred CeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 99988875555 567788889999999999886
No 309
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=95.18 E-value=0.61 Score=46.01 Aligned_cols=116 Identities=9% Similarity=0.030 Sum_probs=68.3
Q ss_pred ccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCC
Q 017148 113 VSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191 (376)
Q Consensus 113 ~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~ 191 (376)
+..+.+|+ ..+-.+.+|+.. +.|+.+-+-..-....+.++.. +..+..++|++.+|-....... .+...+. .
T Consensus 99 ~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~----~~~~~~~adal~l~l~~~qe~~-~p~g~~~-f 171 (352)
T PRK05437 99 RAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQ----RAVEMIEADALQIHLNPLQELV-QPEGDRD-F 171 (352)
T ss_pred HhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHH----HHHHhcCCCcEEEeCccchhhc-CCCCccc-H
Confidence 34456777 777788888866 7888775443211111233332 3344568899999853211000 0000000 0
Q ss_pred cccHHHHHHHHhhCCCCeEEE--ecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 192 PLKYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
...++.+.++++.. ++||+. +|.-.+.+++..+.+.|+|+|.++
T Consensus 172 ~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 172 RGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred HHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 00124566776654 899986 666688999988888999999884
No 310
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.18 E-value=0.34 Score=47.48 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=79.1
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCcccccc-CCHHHHHHHHHHHhcccCccEEEEe---cCCCCCC-c-----c
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLM-LDPKFVGEAMSVIAANTNVPVSVKC---RIGVDDH-D-----S 150 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~-~~~~~~~eiv~~v~~~~~~pv~vKi---R~g~~~~-~-----~ 150 (376)
..++.+.+.|+|+|-+++- .+.+. ...+. ...+.+.++.++.+ ..++|+.+-+ ..|-... . .
T Consensus 110 ~sve~a~~~GAdAVk~lv~------~~~d~-~~~~~~~~~~~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~a~~ 181 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLY------YRPDE-DDAINDRKHAFVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEFAKV 181 (340)
T ss_pred ccHHHHHHcCCCEEEEEEE------eCCCc-chHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCcccccccccccc
Confidence 3467788999999988641 11110 00000 12234555555543 3588987742 1121111 1 1
Q ss_pred HHHHHHHHHHHhh--cCCccEEEEccC-cc-ccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE-ecCCCCHHHHHHH
Q 017148 151 YNQLCDFIYKVSS--LSPTRHFIIHSR-KA-LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-NGGINTVDEVNAA 225 (376)
Q Consensus 151 ~~~~~~~i~~~~e--~~Gvd~I~vh~r-~~-~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~-nGgI~s~~da~~~ 225 (376)
-.+.+....+++. +.|+|.+-+--- .. ...|......-+...-..+.+.++.+.. ++|+|. .||+ +.++..+.
T Consensus 182 ~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~-~~P~vvlsgG~-~~~~f~~~ 259 (340)
T PRK12858 182 KPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT-DLPFIFLSAGV-SPELFRRT 259 (340)
T ss_pred CHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC-CCCEEEECCCC-CHHHHHHH
Confidence 1233333445555 599999987421 11 1112111000000000123455666544 788765 7787 66666555
Q ss_pred H----HcCc--CeeEEchHHhhCCc
Q 017148 226 L----RKGA--HHVMVGRAAYQNPW 244 (376)
Q Consensus 226 l----~~Ga--d~VmiGRa~l~~P~ 244 (376)
+ +.|+ .||.+||....++-
T Consensus 260 l~~A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 260 LEFACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHHHHcCCCccchhhhHHHHhhhh
Confidence 4 4799 99999999987754
No 311
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.16 E-value=3 Score=39.48 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=94.9
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|+++++.+.+.++..+.++.++++|+|+|-+.. |.. .. ...+.+.+-.++|.+.+++|+.+-
T Consensus 63 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y--------~~---~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 63 VAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP--PYY--------NK---PSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred hCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC--CcC--------CC---CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34567999999999999999999999999999999842 331 11 235678888888888889999887
Q ss_pred ecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017148 141 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
-.++.... -+.+ + +.++.+.-.+..|-.+.. +...+.++++...+--.+.+|. -
T Consensus 130 n~P~~tg~~l~~~-~---~~~L~~~~~v~giK~s~~------------------d~~~~~~~~~~~~~~~~v~~G~---d 184 (281)
T cd00408 130 NIPGRTGVDLSPE-T---IARLAEHPNIVGIKDSSG------------------DLDRLTRLIALLGPDFAVLSGD---D 184 (281)
T ss_pred ECccccCCCCCHH-H---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhcCCCeEEEEcc---h
Confidence 55532211 1232 2 233333223333332211 1344445554432222445565 2
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017148 220 DEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+.+...+..|++|.+.|.+-+ -|.++.+.++....|
T Consensus 185 ~~~~~~l~~G~~G~i~~~~n~-~p~~~~~~~~~~~~g 220 (281)
T cd00408 185 DLLLPALALGADGAISGAANV-APKLAVALYEAARAG 220 (281)
T ss_pred HHHHHHHHcCCCEEEehHHhh-CHHHHHHHHHHHHcC
Confidence 455566678999999888643 477655544443344
No 312
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.14 E-value=2.7 Score=39.98 Aligned_cols=153 Identities=12% Similarity=0.207 Sum_probs=97.0
Q ss_pred CCCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017148 63 EQHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 63 ~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
...|++++|=+. +.+... .+.++||+-|.+-.+. -.+..+.+...++++-.+.. ++.|-.-+
T Consensus 68 ~~VPV~lHLDH~~~~~~i~----~ai~~GftSVMiD~S~------------l~~eeNi~~t~~vv~~ah~~-gv~VEaEl 130 (276)
T cd00947 68 ASVPVALHLDHGSSFELIK----RAIRAGFSSVMIDGSH------------LPFEENVAKTKEVVELAHAY-GVSVEAEL 130 (276)
T ss_pred CCCCEEEECCCCCCHHHHH----HHHHhCCCEEEeCCCC------------CCHHHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 356888888655 444333 4456788888875421 12345667777777776543 44433222
Q ss_pred c-C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017148 142 R-I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 142 R-~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
- + |-++ ..+.++..+|+ ++.|+|+|.|+-++..-.+.. ..+.++++.+.++.+.. ++|++
T Consensus 131 G~i~g~e~~~~~~~~~~T~pe~a~~Fv----~~TgvD~LAvsiGt~HG~Y~~-----~~p~L~~~~L~~i~~~~-~vPLV 200 (276)
T cd00947 131 GRIGGEEDGVVGDEGLLTDPEEAEEFV----EETGVDALAVAIGTSHGAYKG-----GEPKLDFDRLKEIAERV-NVPLV 200 (276)
T ss_pred eeecCccCCcccccccCCCHHHHHHHH----HHHCCCEEEeccCccccccCC-----CCCccCHHHHHHHHHHh-CCCEE
Confidence 1 1 1111 12355555543 468999999877664211111 02457799999998875 89999
Q ss_pred EecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017148 212 LNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 212 ~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
.-||=-.+ +++.++++.|+.=|=+++.+...
T Consensus 201 lHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 232 (276)
T cd00947 201 LHGGSGIPDEQIRKAIKLGVCKININTDLRLA 232 (276)
T ss_pred EeCCCCCCHHHHHHHHHcCCeEEEeChHHHHH
Confidence 99987777 55888888999999999987543
No 313
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=95.08 E-value=0.44 Score=47.24 Aligned_cols=123 Identities=13% Similarity=0.071 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~ 152 (376)
.++.+.++++.+.+.||+.+-+..|++... .-.+.++++|+.++ +.+.+-.--+|+. +
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~----------------~d~~~v~avRe~~g~~~~l~iDan~~~~~----~ 202 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD----------------EDLERVRALREAVGDDVRLMVDANGGWTL----E 202 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH----------------HHHHHHHHHHHHhCCCceEEEeCCCCcCH----H
Confidence 578888888888889999999988777532 45577888888774 4455544444443 3
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-cC
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-ad 231 (376)
+.+++ ++.+++.++.+|- ..+++-+.+..+++.+.. ++||.+.=.+.+..|+.++++.| +|
T Consensus 203 ~A~~~-~~~l~~~~l~~iE----------------eP~~~~d~~~~~~l~~~~-~~PIa~gEs~~~~~~~~~l~~~~a~d 264 (372)
T COG4948 203 EAIRL-ARALEEYGLEWIE----------------EPLPPDDLEGLRELRAAT-STPIAAGESVYTRWDFRRLLEAGAVD 264 (372)
T ss_pred HHHHH-HHHhcccCcceEE----------------CCCCccCHHHHHHHHhcC-CCCEecCcccccHHHHHHHHHcCCCC
Confidence 33343 4455667776655 122333466777777665 49999999999999999999965 78
Q ss_pred eeEE
Q 017148 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.|++
T Consensus 265 iv~~ 268 (372)
T COG4948 265 IVQP 268 (372)
T ss_pred eecC
Confidence 7765
No 314
>PRK08185 hypothetical protein; Provisional
Probab=95.08 E-value=3.3 Score=39.57 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHhcccCccEEEEec-CCCC-C----------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCC
Q 017148 117 LDPKFVGEAMSVIAANTNVPVSVKCR-IGVD-D----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP 184 (376)
Q Consensus 117 ~~~~~~~eiv~~v~~~~~~pv~vKiR-~g~~-~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~ 184 (376)
.+.+...++++-.++ .+++|-..+- +|.. + ..+.++..++ .++.|+|++.+.-++..-.+..+
T Consensus 106 eNi~~t~~vv~~a~~-~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f----~~~TgvD~LAvaiGt~HG~y~~~ 180 (283)
T PRK08185 106 ENVALTKEVVELAHK-VGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDF----VSRTGVDTLAVAIGTAHGIYPKD 180 (283)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEEEEeeccCcccccccccccccCCCHHHHHHH----HHhhCCCEEEeccCcccCCcCCC
Confidence 445556666655443 3555544431 2211 0 1245554444 34679999999544431111110
Q ss_pred CCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017148 185 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 185 ~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
..+.++++.++++.+.. ++|++.-||+..+ +++.++++.|+.=|=+++.+...
T Consensus 181 ----~kp~L~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~a 234 (283)
T PRK08185 181 ----KKPELQMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKYA 234 (283)
T ss_pred ----CCCCcCHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHHH
Confidence 12445688999988764 8999999999666 56778888999999999987543
No 315
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.06 E-value=3.4 Score=39.56 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=91.9
Q ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017148 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
......|+++++...+.++..+.++.++++|+|+|-+-. |.- . . ...+.+.+-.++|.+.++.|+.+
T Consensus 69 ~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y--~-----~----~~~~~l~~~f~~va~a~~lPv~i 135 (293)
T PRK04147 69 EAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT--PFY--Y-----P----FSFEEICDYYREIIDSADNPMIV 135 (293)
T ss_pred HhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC--CcC--C-----C----CCHHHHHHHHHHHHHhCCCCEEE
Confidence 344567999999999999999999999999999998753 331 1 1 13466777788888778889888
Q ss_pred EecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017148 140 KCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 140 KiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
---++.... -+. ++ +.++.+.-.+-.|--+.+ ++..+.++.+..++..| .+|. +
T Consensus 136 Yn~P~~tg~~l~~-~~---l~~L~~~pnvvgiK~s~~------------------d~~~~~~~~~~~~~~~v-~~G~--d 190 (293)
T PRK04147 136 YNIPALTGVNLSL-DQ---FNELFTLPKVIGVKQTAG------------------DLYQLERIRKAFPDKLI-YNGF--D 190 (293)
T ss_pred EeCchhhccCCCH-HH---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhCCCCEE-EEee--h
Confidence 632211111 122 22 233333223333332211 13334445444445433 4442 1
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhCC
Q 017148 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGA 257 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g~ 257 (376)
+.+...+..|++|++.|-+-+ -|..+.+.++....|+
T Consensus 191 -~~~~~~l~~G~~G~is~~~n~-~p~~~~~l~~~~~~gd 227 (293)
T PRK04147 191 -EMFASGLLAGADGAIGSTYNV-NGWRARQIFEAAKAGD 227 (293)
T ss_pred -HHHHHHHHcCCCEEEechhhh-CHHHHHHHHHHHHCCC
Confidence 334455668999999876544 2776555444444453
No 316
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=95.04 E-value=0.85 Score=42.04 Aligned_cols=137 Identities=19% Similarity=0.123 Sum_probs=71.6
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHh
Q 017148 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVS 162 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~ 162 (376)
|..+.+.|+|.||+ |.-..|.-|+ +.|..+.+|++.+... .|++..+---..+..+... .....
T Consensus 13 A~~a~~~gaDiID~-------K~P~~GaLGA---~~~~vi~~i~~~~~~~--~pvSAtiGDlp~~p~~~~~---aa~~~- 76 (235)
T PF04476_consen 13 AEEALAGGADIIDL-------KNPAEGALGA---LFPWVIREIVAAVPGR--KPVSATIGDLPMKPGTASL---AALGA- 76 (235)
T ss_pred HHHHHhCCCCEEEc-------cCCCCCCCCC---CCHHHHHHHHHHcCCC--CceEEEecCCCCCchHHHH---HHHHH-
Confidence 34466779999999 3344566665 5677777777765432 6777754321111122211 11112
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHH---HhhC-CCCeEEEecCCC-------CHHHHHHHHH-cCc
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL---LRDF-PDLTFTLNGGIN-------TVDEVNAALR-KGA 230 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~---~~~~-~~ipVi~nGgI~-------s~~da~~~l~-~Ga 230 (376)
..+|+|+|-|--- .. ... .-..+.+..+ .+.+ .+..||+++=-. ++-++.+... .|+
T Consensus 77 a~~GvdyvKvGl~----g~-~~~------~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~ 145 (235)
T PF04476_consen 77 AATGVDYVKVGLF----GC-KDY------DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGF 145 (235)
T ss_pred HhcCCCEEEEecC----CC-CCH------HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCC
Confidence 2479999987321 00 000 0012222222 2222 345566664221 3445555554 899
Q ss_pred CeeEEchHHhhCCchh
Q 017148 231 HHVMVGRAAYQNPWYT 246 (376)
Q Consensus 231 d~VmiGRa~l~~P~lf 246 (376)
++||+=++.=....+|
T Consensus 146 ~gvMlDTa~Kdg~~L~ 161 (235)
T PF04476_consen 146 DGVMLDTADKDGGSLF 161 (235)
T ss_pred CEEEEecccCCCCchh
Confidence 9999977754445554
No 317
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.01 E-value=0.43 Score=45.82 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=56.3
Q ss_pred HHHHHHHHCCCCEEEecCCCCCcc-ccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPK-VAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~-v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
-.|+.++++||+.+=+...+-... ....|. | + -..+.+.+.++.|...+++||++-+-.|+-+..++.++ +
T Consensus 27 ~SArl~e~aGf~ai~~sg~~~~as~lG~pD~-g--~-l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~---V- 98 (294)
T TIGR02319 27 LSAKVIQQAGFPAVHMTGSGTSASMLGLPDL-G--F-TSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRA---T- 98 (294)
T ss_pred HHHHHHHHcCCCEEEecHHHHHHHHcCCCCc-C--C-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHH---H-
Confidence 467888999999997642211110 111232 2 2 24566777888888889999999999888765443333 3
Q ss_pred HHhhcCCccEEEEcc
Q 017148 160 KVSSLSPTRHFIIHS 174 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~ 174 (376)
+.++++|+..|++--
T Consensus 99 ~~~~~aGaagi~IED 113 (294)
T TIGR02319 99 REFERVGIVGYHLED 113 (294)
T ss_pred HHHHHcCCeEEEEEC
Confidence 334679999999954
No 318
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.96 E-value=2.6 Score=41.38 Aligned_cols=160 Identities=12% Similarity=0.184 Sum_probs=91.7
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017148 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
.|+++.|=+. +.+ .+..+.++||+-|-+-.+.=...++ -..++.+.+...++++.... .+++|-.-+-
T Consensus 76 VPValHLDHg~~~e----~i~~ai~~GftSVMiDgS~l~~~~~-----~~p~eENI~~Tkevve~Ah~-~Gv~VEaELG~ 145 (347)
T PRK09196 76 IPVVMHQDHGNSPA----TCQRAIQLGFTSVMMDGSLKADGKT-----PASYEYNVDVTRKVVEMAHA-CGVSVEGELGC 145 (347)
T ss_pred CcEEEECCCCCCHH----HHHHHHHcCCCEEEecCCCCcccCC-----CCCHHHHHHHHHHHHHHHHH-cCCeEEEEEee
Confidence 4677776544 322 2344556677777665331000000 11345677777787777643 3554443331
Q ss_pred CC-CC------------------C--CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHH
Q 017148 143 IG-VD------------------D--HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 143 ~g-~~------------------~--~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+| .+ + ..+.++..+|+ ++.|+|.+.|.-+|.. |++... ...+.++++.+.
T Consensus 146 vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv----~~TgvD~LAvaiGT~HG~Yk~~~~---p~~~~LdfdrL~ 218 (347)
T PRK09196 146 LGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFV----KKTQVDALAIAIGTSHGAYKFTRK---PTGDVLAIDRIK 218 (347)
T ss_pred ccCccccccccccCcccccccchhhcCCCHHHHHHHH----HHhCcCeEhhhhccccCCCCCCCC---CChhhccHHHHH
Confidence 11 11 0 12355655554 4789999998766642 222100 011237899999
Q ss_pred HHHhhCCCCeEEEecCCCCH----------------------HHHHHHHHcCcCeeEEchHHhh
Q 017148 200 ALLRDFPDLTFTLNGGINTV----------------------DEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~----------------------~da~~~l~~Gad~VmiGRa~l~ 241 (376)
++.+..+++|++.-|+=-.+ +++.++++.|+.=|=+++.+..
T Consensus 219 eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~ 282 (347)
T PRK09196 219 EIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRL 282 (347)
T ss_pred HHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHH
Confidence 98887657999988886553 5677777788888888777643
No 319
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.93 E-value=0.66 Score=43.96 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|+++|-++.. +|+ +.+ -..+.-.++++.+++.+ .+||.+.+.. .+..
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~Gs--------tGE-~~~--ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-----~~~~ 79 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGT--------TGE-APT--LTDEERKEVIEAVVEAVAGRVPVIAGVGA-----NSTR 79 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC--------Ccc-ccc--CCHHHHHHHHHHHHHHhCCCCeEEEecCC-----ccHH
Confidence 6788999999999999999988742 233 322 33444555555555544 4777775543 2344
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-.-. ..+ ...-++++.++.+. +++||+. .|--.+++.+.++.
T Consensus 80 ~~i~~-a~~a~~~Gad~v~v~pP~y~--~~~-------~~~~~~~~~~ia~~-~~~pi~iYn~P~~tg~~l~~~~~~~L~ 148 (281)
T cd00408 80 EAIEL-ARHAEEAGADGVLVVPPYYN--KPS-------QEGIVAHFKAVADA-SDLPVILYNIPGRTGVDLSPETIARLA 148 (281)
T ss_pred HHHHH-HHHHHHcCCCEEEECCCcCC--CCC-------HHHHHHHHHHHHhc-CCCCEEEEECccccCCCCCHHHHHHHh
Confidence 55553 45567899999999764211 111 01125566677765 5899873 47777888888777
Q ss_pred H
Q 017148 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 149 ~ 149 (281)
T cd00408 149 E 149 (281)
T ss_pred c
Confidence 5
No 320
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=94.92 E-value=3.7 Score=39.33 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHhcccCccEEEEec-C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCC
Q 017148 116 MLDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183 (376)
Q Consensus 116 ~~~~~~~~eiv~~v~~~~~~pv~vKiR-~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~ 183 (376)
+.+.+...++++-.+. .+++|-.-+- + |-++ ..+.++..+|+ ++.|+|.+.|.-+|..-.+..
T Consensus 114 eeNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv----~~TgvD~LAvaiGt~HG~y~~ 188 (288)
T TIGR00167 114 EENIELTKKVVERAHK-MGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV----KLTGVDSLAAAIGNVHGVYKG 188 (288)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH----hccCCcEEeeccCccccccCC
Confidence 4566677777776543 2444433221 1 1111 12345555553 578999999987775211111
Q ss_pred CCCCCCCCc-ccHHHHHHHHhhCCCCeEEEecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017148 184 PAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 184 ~~~~~~~~~-~~~~~v~~~~~~~~~ipVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
-+. ++++.+.++.+.. ++|++.-||=-.+ +++.++++.|+.=|=+++.+...
T Consensus 189 ------~p~~Ld~~~L~~I~~~v-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a 242 (288)
T TIGR00167 189 ------EPKGLDFERLEEIQKYV-NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIA 242 (288)
T ss_pred ------CCCccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHH
Confidence 133 6799999997765 9999999988777 57888999999999999987544
No 321
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.91 E-value=0.16 Score=48.33 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=47.0
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|+|.+..- ..+.++++++.. +++|+.+.||| +.+.+.++.++|+|++.+|.-...-
T Consensus 207 ~~gaD~I~LD~~------------------~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 207 AAGADIVMLDEL------------------SLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISIGAMTKDV 267 (277)
T ss_pred HcCCCEEEECCC------------------CHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 689999976321 134445544432 48999999999 7999999999999999999866655
Q ss_pred Cch
Q 017148 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 268 ~~~ 270 (277)
T PRK05742 268 KAV 270 (277)
T ss_pred ccc
Confidence 654
No 322
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.91 E-value=1.3 Score=43.69 Aligned_cols=140 Identities=10% Similarity=0.058 Sum_probs=89.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecC
Q 017148 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~ 143 (376)
|+-.-+.+.+++.+.+.++...+.||..+-+..|-+..+ .+. + .+++.-.+.|+++|+.++ +.+.|-..-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~---~~~-~----~~~~~D~~~i~avr~~~g~~~~l~vDaN~ 185 (352)
T cd03325 114 RVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQW---IDT-S----KKVDAAVERVAALREAVGPDIDIGVDFHG 185 (352)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCccc---CCC-H----HHHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 444444456788887777777788999999987643221 111 1 235666788888888763 344444433
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017148 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+ ..+..+++ +.+++.|+.+|. . .+++-+++..+++++.. .+||.+.=.+.+++++.
T Consensus 186 ~~~----~~~A~~~~-~~l~~~~i~~iE----e------------P~~~~d~~~~~~L~~~~-~~pia~dEs~~~~~~~~ 243 (352)
T cd03325 186 RVS----KPMAKDLA-KELEPYRLLFIE----E------------PVLPENVEALAEIAART-TIPIATGERLFSRWDFK 243 (352)
T ss_pred CCC----HHHHHHHH-HhccccCCcEEE----C------------CCCccCHHHHHHHHHhC-CCCEEecccccCHHHHH
Confidence 443 33444443 345667887765 1 11222366667777664 89988877789999999
Q ss_pred HHHH-cCcCeeEE
Q 017148 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
.+++ ..+|.|++
T Consensus 244 ~~~~~~~~d~v~~ 256 (352)
T cd03325 244 ELLEDGAVDIIQP 256 (352)
T ss_pred HHHHhCCCCEEec
Confidence 9998 56888876
No 323
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.91 E-value=0.12 Score=51.66 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=46.6
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.++|+|.|.+.... |.+ ....+.++++++.+|+++ +..|+|.|.+++..+++.|||+|.+|
T Consensus 162 v~aGvDvI~iD~a~----g~~--------~~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 162 VKAHVDILVIDSAH----GHS--------TRIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HhcCCCEEEEECCC----CCC--------hhHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 36999999985432 111 011567788888888877 56799999999999999999999887
No 324
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.90 E-value=0.23 Score=44.78 Aligned_cols=78 Identities=24% Similarity=0.284 Sum_probs=51.5
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017148 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
++..=+|. ++.++..++ .+.+-+.|+..+.|.-++.. ..+.++++.++++++ +++.|.
T Consensus 9 ~iiaVir~--~~~~~a~~~----~~al~~gGi~~iEiT~~t~~---------------a~~~I~~l~~~~p~~-~vGAGT 66 (196)
T PF01081_consen 9 KIIAVIRG--DDPEDAVPI----AEALIEGGIRAIEITLRTPN---------------ALEAIEALRKEFPDL-LVGAGT 66 (196)
T ss_dssp SEEEEETT--SSGGGHHHH----HHHHHHTT--EEEEETTSTT---------------HHHHHHHHHHHHTTS-EEEEES
T ss_pred CEEEEEEc--CCHHHHHHH----HHHHHHCCCCEEEEecCCcc---------------HHHHHHHHHHHCCCC-eeEEEe
Confidence 34444564 333334343 33445799999999877631 267788888888775 799999
Q ss_pred CCCHHHHHHHHHcCcCeeEE
Q 017148 216 INTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 216 I~s~~da~~~l~~Gad~Vmi 235 (376)
|.|.++++++++.||++++-
T Consensus 67 V~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 67 VLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp --SHHHHHHHHHHT-SEEEE
T ss_pred ccCHHHHHHHHHcCCCEEEC
Confidence 99999999999999998875
No 325
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=94.84 E-value=1.1 Score=43.91 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=66.2
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccCCCCCCCCCC
Q 017148 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRT 189 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~g~~~~~~~~ 189 (376)
-|+..+++.+++.++- .++.||.+|.-.. .+++|+...+..+ ...|-. .+.+|.++..+.+. .
T Consensus 182 IgAr~~~N~~LL~~va-----~~~kPViLk~G~~----~ti~E~l~A~e~i-~~~GN~~viL~erG~~tf~~~------~ 245 (335)
T PRK08673 182 IGARNMQNFDLLKEVG-----KTNKPVLLKRGMS----ATIEEWLMAAEYI-LAEGNPNVILCERGIRTFETA------T 245 (335)
T ss_pred ECcccccCHHHHHHHH-----cCCCcEEEeCCCC----CCHHHHHHHHHHH-HHcCCCeEEEEECCCCCCCCc------C
Confidence 3777888888776653 3588999996653 2344555443333 356775 44557555333211 1
Q ss_pred CCcccHHHHHHHHhhCCCCeEEEec----CCCC--HHHHHHHHHcCcCeeEEch
Q 017148 190 IPPLKYEYYYALLRDFPDLTFTLNG----GINT--VDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~ipVi~nG----gI~s--~~da~~~l~~Gad~VmiGR 237 (376)
...+++..+..+++.+ ++|||+.- |.++ +..+..++..||||++|=.
T Consensus 246 ~~~ldl~ai~~lk~~~-~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~ 298 (335)
T PRK08673 246 RNTLDLSAVPVIKKLT-HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEV 298 (335)
T ss_pred hhhhhHHHHHHHHHhc-CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEe
Confidence 1234466666666554 79998853 3221 2456667778999999864
No 326
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=94.84 E-value=0.22 Score=47.26 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=42.2
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccH-HHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~-~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
+.|+|+|-+..-... .. +.+..+.+..+++|+++.||| +.+.+.+..++|+|+|++|.-.
T Consensus 201 ~~gaD~I~ld~~~p~---------------~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 201 EAGADILQLDKFSPE---------------ELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred HcCCCEEEECCCCHH---------------HHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcCCcEEEEChhh
Confidence 589999887643210 12 222223332357999999999 8999999999999999766644
No 327
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=94.83 E-value=0.12 Score=56.06 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=54.6
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC--CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~--~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+|+|++.+..--.... + ....+++.++.+.++++... ++||++-||| +++++.+++++||++|.+-+++...
T Consensus 127 ~gaDYi~~Gpvf~T~t----K-~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 127 ALPDVIGIGPVASTAT----K-PDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred CCCCEEEECCccccCC----C-CCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 3599999875322110 0 01123455777877776552 3999999999 9999999999999999999999976
Q ss_pred Cch
Q 017148 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
++.
T Consensus 201 ~d~ 203 (755)
T PRK09517 201 ANP 203 (755)
T ss_pred CCH
Confidence 663
No 328
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.81 E-value=0.27 Score=46.76 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=47.2
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC--CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
++|+|.|-+...+... --+.++.+.+.. +++.+.++||| +.+.+.+..++|+|.+.+|.-...
T Consensus 200 ~agaDiI~LDn~~~e~--------------l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~s 264 (278)
T PRK08385 200 KAGADIIMLDNMTPEE--------------IREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTHS 264 (278)
T ss_pred HcCcCEEEECCCCHHH--------------HHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcC
Confidence 5999988877643210 012233333322 47889999999 999999999999999999987664
Q ss_pred CCch
Q 017148 242 NPWY 245 (376)
Q Consensus 242 ~P~l 245 (376)
-|++
T Consensus 265 a~~~ 268 (278)
T PRK08385 265 VRNF 268 (278)
T ss_pred CCcc
Confidence 5554
No 329
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.80 E-value=1.3 Score=40.30 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCC
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPS 102 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~ 102 (376)
..|++.=|.+.++++-...++.+.+.|++.|||.+-+|.
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~ 50 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPA 50 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 457888888999999999999999999999999887664
No 330
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=94.79 E-value=1.5 Score=42.02 Aligned_cols=150 Identities=14% Similarity=0.193 Sum_probs=92.3
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|++++|=+. +.+ .++.+.++||+-|.+-.+. -.++.+.+...++++..+. .++.|-.-+-
T Consensus 74 ~VPValHLDHg~~~e----~i~~ai~~GFtSVM~DgS~------------lp~eeNi~~T~evv~~Ah~-~gv~VEaElG 136 (286)
T PRK12738 74 NMPLALHLDHHESLD----DIRRKVHAGVRSAMIDGSH------------FPFAENVKLVKSVVDFCHS-QDCSVEAELG 136 (286)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCeEeecCCC------------CCHHHHHHHHHHHHHHHHH-cCCeEEEEEE
Confidence 45777777544 322 3344556688777775321 1134566777777777654 2444332221
Q ss_pred -C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeE
Q 017148 143 -I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 210 (376)
Q Consensus 143 -~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipV 210 (376)
+ |.++ ..+.++..+|+ ++.|+|++.|.-+|..-.+. ..|.++++.+.++.+.. ++|+
T Consensus 137 ~igg~ed~~~~~~~~~~~T~peea~~Fv----~~TgvD~LAvaiGt~HG~Y~------~~p~Ldfd~l~~I~~~~-~vPL 205 (286)
T PRK12738 137 RLGGVEDDMSVDAESAFLTDPQEAKRFV----ELTGVDSLAVAIGTAHGLYS------KTPKIDFQRLAEIREVV-DVPL 205 (286)
T ss_pred eeCCccCCcccccchhcCCCHHHHHHHH----HHhCCCEEEeccCcccCCCC------CCCcCCHHHHHHHHHHh-CCCE
Confidence 1 1111 12455555554 47899999998777521111 12567799999998775 8999
Q ss_pred EEecCCCCH-HHHHHHHHcCcCeeEEchHHhh
Q 017148 211 TLNGGINTV-DEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 211 i~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~ 241 (376)
+.-|+=-.+ +++.++.+.|+.=|=+++.+..
T Consensus 206 VLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~ 237 (286)
T PRK12738 206 VLHGASDVPDEFVRRTIELGVTKVNVATELKI 237 (286)
T ss_pred EEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHH
Confidence 988875555 5677888899999999887643
No 331
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.76 E-value=1.4 Score=42.89 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccc-cCCCCCCCCCCCCcccHHHH
Q 017148 120 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-LNGISPAENRTIPPLKYEYY 198 (376)
Q Consensus 120 ~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~-~~g~~~~~~~~~~~~~~~~v 198 (376)
+...+-++..++..+.|+.+.+- | .+ .++..+. ++.++++|+|+|.+|-.... ..+..+. ..+....+.+
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~-g-~~---~~~~~~~-a~~~~~~gad~iElN~s~~~~~~~~~g~---~~~~~~~eiv 155 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLN-G-VS---AGGWVDY-ARQIEEAGADALELNIYALPTDPDISGA---EVEQRYLDIL 155 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeC-C-CC---HHHHHHH-HHHHHhcCCCEEEEeCCCCCCCCCcccc---hHHHHHHHHH
Confidence 44444455555555789888763 2 22 2344443 34456789999999864311 0111110 1111113455
Q ss_pred HHHHhhCCCCeEEE--ecCCCCHHHHHHHHH-cCcCeeEE
Q 017148 199 YALLRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 199 ~~~~~~~~~ipVi~--nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
.++++. .++||++ ..++.+..++.+++. .|||+|.+
T Consensus 156 ~~v~~~-~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 156 RAVKSA-VTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHhc-cCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 565554 4799985 456666666666665 89999876
No 332
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.73 E-value=1.3 Score=44.74 Aligned_cols=125 Identities=10% Similarity=0.026 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCcc
Q 017148 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~ 150 (376)
+.+++++.+.++...+.||..+-+..| .+++.-.+.++++|+.++ +.+.+-.--+|+
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg-----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~---- 252 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG-----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWD---- 252 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC-----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC----
Confidence 457788888887777789999987543 134556678888888774 334443333343
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC--CCeEEEecCCCCHHHHHHHHH-
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALR- 227 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~--~ipVi~nGgI~s~~da~~~l~- 227 (376)
.++.+++ .+.+++.++.+|. . .+++-+++..+++.+... ++||.+.=.+.+..++.++++
T Consensus 253 ~~~A~~~-~~~L~~~~l~~iE----E------------P~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~ 315 (415)
T cd03324 253 VPEAIEW-VKQLAEFKPWWIE----E------------PTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA 315 (415)
T ss_pred HHHHHHH-HHHhhccCCCEEE----C------------CCCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc
Confidence 3344444 3455678887765 1 122223566666666542 599887778999999999998
Q ss_pred cCcCeeEE
Q 017148 228 KGAHHVMV 235 (376)
Q Consensus 228 ~Gad~Vmi 235 (376)
..+|.+++
T Consensus 316 ~a~dil~~ 323 (415)
T cd03324 316 GAIDVVQI 323 (415)
T ss_pred CCCCEEEe
Confidence 55788875
No 333
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.70 E-value=1.5 Score=40.08 Aligned_cols=131 Identities=12% Similarity=0.083 Sum_probs=78.8
Q ss_pred CCCEEEEecC----CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017148 64 QHPIVLQIGG----SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 64 ~~p~~vQL~g----~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
+--+..|+.. .+.....++++.+.++|...+++ + .+ +.++.+++.+++|+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~--~------------------~~----~~~~~i~~~~~iPil~ 65 (219)
T cd04729 10 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA--N------------------GV----EDIRAIRARVDLPIIG 65 (219)
T ss_pred CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc--C------------------CH----HHHHHHHHhCCCCEEE
Confidence 4445556542 25677888999999999888764 1 11 3455566667889865
Q ss_pred EecCCCCCC-----ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017148 140 KCRIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 140 KiR~g~~~~-----~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
-.+.++++. .+.++ +. .+.++|+|.|.+....... + +. ....+.+..+++.. ++|++.
T Consensus 66 ~~~~~~~~~~~~ig~~~~~----~~-~a~~aGad~I~~~~~~~~~----p-~~----~~~~~~i~~~~~~g-~~~iiv-- 128 (219)
T cd04729 66 LIKRDYPDSEVYITPTIEE----VD-ALAAAGADIIALDATDRPR----P-DG----ETLAELIKRIHEEY-NCLLMA-- 128 (219)
T ss_pred EEecCCCCCCceeCCCHHH----HH-HHHHcCCCEEEEeCCCCCC----C-CC----cCHHHHHHHHHHHh-CCeEEE--
Confidence 444444321 11222 22 2346999988875432100 0 00 01134555665554 577776
Q ss_pred CCCCHHHHHHHHHcCcCeeEE
Q 017148 215 GINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 215 gI~s~~da~~~l~~Gad~Vmi 235 (376)
++.|.+++..+.+.|+|.+.+
T Consensus 129 ~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 129 DISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred ECCCHHHHHHHHHcCCCEEEc
Confidence 688999998888899999865
No 334
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.63 E-value=0.092 Score=54.25 Aligned_cols=61 Identities=18% Similarity=0.337 Sum_probs=46.4
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.++|+|.|.+..- .|.+. ..|+.++++++.+|+++| ..|+|.|.++++.+++.|||+|.+|
T Consensus 257 ~~ag~d~i~iD~~----~g~~~--------~~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 257 VKAGVDVVVLDSS----QGDSI--------YQLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHcCCCEEEEeCC----CCCcH--------HHHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence 4699999998652 22211 126788888888776654 4589999999999999999999765
No 335
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.61 E-value=0.34 Score=43.95 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
.++..+. .+.+.+.|++.|.|.-++.. .++.++++++++++ -+++.|-|.|.++++++++.||
T Consensus 19 ~e~a~~~-~~al~~~Gi~~iEit~~t~~---------------a~~~i~~l~~~~~~-~~vGAGTVl~~~~a~~a~~aGA 81 (204)
T TIGR01182 19 VDDALPL-AKALIEGGLRVLEVTLRTPV---------------ALDAIRLLRKEVPD-ALIGAGTVLNPEQLRQAVDAGA 81 (204)
T ss_pred HHHHHHH-HHHHHHcCCCEEEEeCCCcc---------------HHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCC
Confidence 3344433 44556799999999876531 26778888888876 4799999999999999999999
Q ss_pred CeeE
Q 017148 231 HHVM 234 (376)
Q Consensus 231 d~Vm 234 (376)
++++
T Consensus 82 ~Fiv 85 (204)
T TIGR01182 82 QFIV 85 (204)
T ss_pred CEEE
Confidence 9884
No 336
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.55 E-value=0.28 Score=43.14 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=58.6
Q ss_pred HHHHHHHHhcccC-c-cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017148 122 VGEAMSVIAANTN-V-PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 122 ~~eiv~~v~~~~~-~-pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+.+.++++++..+ . ++.|.+. +.+++.+. + ++|+|.|-+...+.. .--+.+.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~-------~~ee~~ea----~-~~g~d~I~lD~~~~~--------------~~~~~v~ 119 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE-------NLEEAEEA----L-EAGADIIMLDNMSPE--------------DLKEAVE 119 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES-------SHHHHHHH----H-HTT-SEEEEES-CHH--------------HHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEEEcC-------CHHHHHHH----H-HhCCCEEEecCcCHH--------------HHHHHHH
Confidence 4556666666542 2 2555433 34444332 2 489999988754320 0012333
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+....+++.+.++||| +.+.+.+..++|+|.+.+|.....-|++
T Consensus 120 ~l~~~~~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~~~ 164 (169)
T PF01729_consen 120 ELRELNPRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSAPPL 164 (169)
T ss_dssp HHHHHTTTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSBE--
T ss_pred HHhhcCCcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCCccc
Confidence 33334567999999999 7888999999999999999987776664
No 337
>PRK14017 galactonate dehydratase; Provisional
Probab=94.44 E-value=1.9 Score=42.93 Aligned_cols=140 Identities=9% Similarity=0.035 Sum_probs=89.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecC
Q 017148 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~ 143 (376)
|+-..+.+.+++++.+.++.+.+.||..+-+..|-+.. ..+. ..+++.-.+.++++|+.++ +.+.+-..-
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~---~~~~-----~~~~~~d~~~i~avr~~~g~~~~l~vDaN~ 186 (382)
T PRK14017 115 RVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ---YIDS-----PRKVDAAVARVAAVREAVGPEIGIGVDFHG 186 (382)
T ss_pred eEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc---cccc-----HHHHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 44444555688888877777778899999887542111 1111 1235666788899998774 444444333
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017148 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+ .++.++++ +.+++.|+.+|. . .+++-+++..+++.+. ..+||.+.=.+.+.+++.
T Consensus 187 ~w~----~~~A~~~~-~~l~~~~~~~iE----e------------P~~~~d~~~~~~L~~~-~~~pIa~dEs~~~~~~~~ 244 (382)
T PRK14017 187 RVH----KPMAKVLA-KELEPYRPMFIE----E------------PVLPENAEALPEIAAQ-TSIPIATGERLFSRWDFK 244 (382)
T ss_pred CCC----HHHHHHHH-HhhcccCCCeEE----C------------CCCcCCHHHHHHHHhc-CCCCEEeCCccCCHHHHH
Confidence 343 33444443 445667877765 1 1222235666777665 489999888899999999
Q ss_pred HHHH-cCcCeeEE
Q 017148 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
.+++ ..+|.|++
T Consensus 245 ~li~~~a~d~v~~ 257 (382)
T PRK14017 245 RVLEAGGVDIIQP 257 (382)
T ss_pred HHHHcCCCCeEec
Confidence 9998 45788776
No 338
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=94.43 E-value=2.1 Score=42.49 Aligned_cols=193 Identities=12% Similarity=0.124 Sum_probs=107.2
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEE-Eecceeecccccccchhhhh---hccC--C--CCCCEEEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWL-YTEMLAAETIIYQQGNLDRF---LAFS--P--EQHPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~-~te~v~~~~~~~~~~~~~~~---~~~~--~--~~~p~~vQL~g~~~~~~~~aa~ 84 (376)
|+ |.+...+..++ ...||++++ --|.+.........++.... ++.. + +..++.+++.+. .+++.+-|+
T Consensus 135 P~-GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~-~~em~~ra~ 212 (364)
T cd08210 135 PQ-GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGP-PTQLLERAR 212 (364)
T ss_pred cc-cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCC-HHHHHHHHH
Confidence 87 99999998876 355788877 34555444443322222111 1111 1 335788999875 779999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCC----CccHHHHHHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDD----HDSYNQLCDFIY 159 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~----~~~~~~~~~~i~ 159 (376)
.++++|.+++-++. . -||-+ .++.+++..+ .|+.. .|.++-. ...+.- ...+.
T Consensus 213 ~a~~~Ga~~vMv~~---~-------~~G~~----------~~~~l~~~~~~l~i~a-Hra~~ga~~~~~~~is~-~~~~~ 270 (364)
T cd08210 213 FAKEAGAGGVLIAP---G-------LTGLD----------TFRELAEDFDFLPILA-HPAFAGAFVSSGDGISH-ALLFG 270 (364)
T ss_pred HHHHcCCCEEEeec---c-------cchHH----------HHHHHHhcCCCcEEEE-ccccccccccCCCcccH-HHHHH
Confidence 99999999999974 1 13421 2333344444 55433 3333211 011111 11245
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh----CC----CCeEEEecCCCCHHHHHHHHH-cCc
Q 017148 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD----FP----DLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~----~~----~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
++..-+|+|.+++.+-. .+.. ...+.+.++.+. .. ..|+. +||+ ++..+.++++ .|-
T Consensus 271 kl~RlaGad~~~~~~~~---g~~~---------~~~e~~~~ia~~~~~~~~~iK~~~Pv~-sgG~-~~~~v~~l~~~~G~ 336 (364)
T cd08210 271 TLFRLAGADAVIFPNYG---GRFG---------FSREECQAIADACRRPMGGLKPILPAP-GGGM-SVERAPEMVELYGP 336 (364)
T ss_pred HHHHHhCCCEEEeCCCc---CCcc---------CCHHHHHHHHHHhcCCccccCCCcCcC-CCCc-CHHHHHHHHHHcCC
Confidence 66667899987653211 1110 112223333221 11 23443 4555 5578888887 788
Q ss_pred Ce-eEEchHHhhCCch
Q 017148 231 HH-VMVGRAAYQNPWY 245 (376)
Q Consensus 231 d~-VmiGRa~l~~P~l 245 (376)
|. +++|-++++.|+=
T Consensus 337 Dvil~aGGgi~gHp~g 352 (364)
T cd08210 337 DVMLLIGGSLLRAGDD 352 (364)
T ss_pred cEEEEccccccCCCCC
Confidence 84 5578889999984
No 339
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.36 E-value=2 Score=40.90 Aligned_cols=109 Identities=8% Similarity=0.049 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcc-cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017148 119 PKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 119 ~~~~~eiv~~v~~~-~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
++...+-+...++. .+.|+.+-++.. + .+++.+. ++.++++|+|+|.++.......... .....+....+.
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~--~---~~~~~~~-a~~~~~~G~d~ielN~~cP~~~~~~--~~~~~~~~~~ei 153 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGS--S---KEDYVEL-ARKIERAGAKALELNLSCPNVGGGR--QLGQDPEAVANL 153 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccC--C---HHHHHHH-HHHHHHhCCCEEEEEcCCCCCCCCc--ccccCHHHHHHH
Confidence 34444444444444 578888877642 2 2344433 3445578999999987643211100 000011111344
Q ss_pred HHHHHhhCCCCeEEE-ecCCCCHHHH---HHHH-HcCcCeeEEc
Q 017148 198 YYALLRDFPDLTFTL-NGGINTVDEV---NAAL-RKGAHHVMVG 236 (376)
Q Consensus 198 v~~~~~~~~~ipVi~-nGgI~s~~da---~~~l-~~Gad~VmiG 236 (376)
+.++++.. ++||+. .+...+.++. .+++ +.|+|++.+-
T Consensus 154 v~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 154 LKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 55555544 788874 2333453333 3333 3899999874
No 340
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=94.36 E-value=0.19 Score=46.74 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=53.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-CccHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-HDSYNQLCDFIY 159 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-~~~~~~~~~~i~ 159 (376)
-.|+.++++||++|=+...+=.......|. | + -..+.+.+.++.|...+++||++-+-.|+-+ ..++.++++
T Consensus 20 ~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~-~--~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~--- 92 (238)
T PF13714_consen 20 LSARLAERAGFDAIATSGAGVAASLGYPDG-G--L-LTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVR--- 92 (238)
T ss_dssp HHHHHHHHTT-SEEEEHHHHHHHHTTS-SS-S----S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHH---
T ss_pred HHHHHHHHcCCCEEEechHHHHHHcCCCCC-C--C-CCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHH---
Confidence 477889999999987743211110011121 1 1 2456677888888888999999999999876 334444433
Q ss_pred HHhhcCCccEEEEccC
Q 017148 160 KVSSLSPTRHFIIHSR 175 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r 175 (376)
.++++|+..|++--.
T Consensus 93 -~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 93 -ELERAGAAGINIEDQ 107 (238)
T ss_dssp -HHHHCT-SEEEEESB
T ss_pred -HHHHcCCcEEEeecc
Confidence 345799999999643
No 341
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.33 E-value=2.1 Score=40.06 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=62.5
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccCCCCCCCCCCC
Q 017148 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|+..+.+.+++.. +. .+++||.+|.-.. .+.+|+...+..+ .+.|.. .+.+|-++..|. .. ..
T Consensus 105 gs~~~~n~~LL~~----va-~tgkPVilk~G~~----~t~~e~~~A~e~i-~~~Gn~~i~L~eRg~~~Y~--~~----~~ 168 (250)
T PRK13397 105 GARNMQNFEFLKT----LS-HIDKPILFKRGLM----ATIEEYLGALSYL-QDTGKSNIILCERGVRGYD--VE----TR 168 (250)
T ss_pred CcccccCHHHHHH----HH-ccCCeEEEeCCCC----CCHHHHHHHHHHH-HHcCCCeEEEEccccCCCC--Cc----cc
Confidence 5556677655544 33 2589999996532 2345555444433 457875 445563332221 11 11
Q ss_pred CcccHHHHHHHHhhCCCCeEEEe----cCCCC--HHHHHHHHHcCcCeeEEch
Q 017148 191 PPLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~n----GgI~s--~~da~~~l~~Gad~VmiGR 237 (376)
..+++..+..+++.+ ++|||.. +|.++ +.-+..++..||||+||=+
T Consensus 169 n~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~ 220 (250)
T PRK13397 169 NMLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEV 220 (250)
T ss_pred cccCHHHHHHHHHHh-CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEe
Confidence 133455666666555 8999885 55443 2445666778999999854
No 342
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.29 E-value=1.8 Score=43.16 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~ 152 (376)
+++.+.+.++...+.||..+-+..|- .+++.-.+.|+++|+.++ ..+.|-.--+|+ .+
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~----------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~----~~ 219 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGG----------------APLDEDLRRIEAALDVLGDGARLAVDANGRFD----LE 219 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCC----HH
Confidence 56777777777778899999885431 234555778888888764 455554444443 33
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcC-c-
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-A- 230 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~G-a- 230 (376)
+.+++ .+.+++.++.+|. . .+++-+++..+++.+.. ++||.+.=.+.+..++.++++.+ +
T Consensus 220 ~A~~~-~~~l~~~~~~~iE----e------------P~~~~d~~~~~~L~~~~-~iPIa~gEs~~~~~~~~~li~~~a~~ 281 (385)
T cd03326 220 TAIAY-AKALAPYGLRWYE----E------------PGDPLDYALQAELADHY-DGPIATGENLFSLQDARNLLRYGGMR 281 (385)
T ss_pred HHHHH-HHHhhCcCCCEEE----C------------CCCccCHHHHHHHHhhC-CCCEEcCCCcCCHHHHHHHHHhCCcc
Confidence 44443 3445677777765 1 12233466677777654 89999988899999999999854 3
Q ss_pred ---CeeEE
Q 017148 231 ---HHVMV 235 (376)
Q Consensus 231 ---d~Vmi 235 (376)
|.|++
T Consensus 282 ~~~div~~ 289 (385)
T cd03326 282 PDRDVLQF 289 (385)
T ss_pred ccCCEEEe
Confidence 77665
No 343
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=94.27 E-value=0.64 Score=41.44 Aligned_cols=158 Identities=19% Similarity=0.256 Sum_probs=92.5
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEec--CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN--~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..++.+|..+|-..+++-++.+.++|+|++-+. =|.-+++.+ +| --+|+++|+.++.+...-+.
T Consensus 5 ~~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT----~G----------~pvV~slR~~~~~~~ffD~H 70 (224)
T KOG3111|consen 5 PKIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNIT----FG----------PPVVESLRKHTGADPFFDVH 70 (224)
T ss_pred ceechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcc----cc----------hHHHHHHHhccCCCcceeEE
Confidence 345666777776777777788889999987553 344444433 34 24677788877666333333
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc-cc---------cC----CCCCCCC---C----C-----------C
Q 017148 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-AL---------LN----GISPAEN---R----T-----------I 190 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~~---------~~----g~~~~~~---~----~-----------~ 190 (376)
+=+.+ .++.++.++ ++|++.+++|--. +. .+ |..-... + . +
T Consensus 71 mMV~~---Peq~V~~~a----~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtV 143 (224)
T KOG3111|consen 71 MMVEN---PEQWVDQMA----KAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTV 143 (224)
T ss_pred EeecC---HHHHHHHHH----hcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEe
Confidence 32232 223332222 5788888877421 00 00 1100000 0 0 0
Q ss_pred Cccc---------HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 191 PPLK---------YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 191 ~~~~---------~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
.|.. ..-+..+++++|++-+-..||+ +++.+.++.+.||+.+..|++.+.-++
T Consensus 144 ePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 144 EPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAAD 205 (224)
T ss_pred cCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHHHHHcCCCEEEecceeecCCC
Confidence 0000 1234555667888777799999 788999999999999999999876554
No 344
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.19 E-value=0.14 Score=52.70 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=46.1
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++|++.|.+..-. |.. ..-++.+..++++++++|||+ |+|.|.+++..+.+.|||+|-+|
T Consensus 236 L~~agvdvivvD~a~----g~~--------~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 236 LVEAGVDVLVVDTAH----GHS--------EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHhCCCEEEEECCC----Ccc--------hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 346899988874321 110 001566777777777899888 99999999999999999999775
No 345
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.19 E-value=1.3 Score=43.54 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=65.0
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccC-CCCCCCCCC
Q 017148 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLN-GISPAENRT 189 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~-g~~~~~~~~ 189 (376)
|+..+++.+++.+ +. .+++||.+|.-.. .+++|+...+..+. +.|-. .+.+|.+...+. ++.
T Consensus 191 ga~~~~n~~LL~~----va-~t~kPVllk~G~~----~t~ee~~~A~e~i~-~~Gn~~viL~erG~rtf~s~y~------ 254 (352)
T PRK13396 191 GARNMQNFSLLKK----VG-AQDKPVLLKRGMA----ATIDEWLMAAEYIL-AAGNPNVILCERGIRTFDRQYT------ 254 (352)
T ss_pred CcccccCHHHHHH----HH-ccCCeEEEeCCCC----CCHHHHHHHHHHHH-HcCCCeEEEEecCCccCcCCCC------
Confidence 6777778666444 33 3589999996653 24555554444443 56774 555677654321 211
Q ss_pred CCcccHHHHHHHHhhCCCCeEEEec----CCC--CHHHHHHHHHcCcCeeEEc
Q 017148 190 IPPLKYEYYYALLRDFPDLTFTLNG----GIN--TVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 190 ~~~~~~~~v~~~~~~~~~ipVi~nG----gI~--s~~da~~~l~~Gad~VmiG 236 (376)
...+++..+..+++.+ ++|||.+- |-+ .+.-+..++..||||++|=
T Consensus 255 ~~~~dl~ai~~lk~~~-~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE 306 (352)
T PRK13396 255 RNTLDLSVIPVLRSLT-HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIE 306 (352)
T ss_pred CCCcCHHHHHHHHHhh-CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEE
Confidence 1345677787776654 89998762 222 2244555666899999985
No 346
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=94.16 E-value=0.75 Score=43.19 Aligned_cols=141 Identities=14% Similarity=0.132 Sum_probs=83.7
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc-EEEEecCCCC
Q 017148 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP-VSVKCRIGVD 146 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p-v~vKiR~g~~ 146 (376)
+..|...|- ..|++++++|.|.|-+ |-....+. -+|.+.+.-..+.+..-+++|++....+ +.+-+..+..
T Consensus 18 i~~lTaYD~----~~A~~~d~agvD~iLV--GDSlgmv~--~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy 89 (261)
T PF02548_consen 18 IVMLTAYDY----PSARIADEAGVDIILV--GDSLGMVV--LGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSY 89 (261)
T ss_dssp EEEEE--SH----HHHHHHHHTT-SEEEE---TTHHHHT--T--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSS
T ss_pred EEEEecccH----HHHHHHHHcCCCEEEe--CCcHHHhe--eCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccc
Confidence 456777664 5788899999999877 33333322 1245556667788888999998877444 5566666544
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe-----------cC
Q 017148 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-----------GG 215 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n-----------Gg 215 (376)
. .+.++.++...+++.++|+|++-+.|+... .+.++.+.+. .|||++- ||
T Consensus 90 ~-~s~e~av~nA~rl~ke~GadaVKlEGg~~~----------------~~~i~~l~~~--GIPV~gHiGLtPQ~~~~~GG 150 (261)
T PF02548_consen 90 Q-ASPEQAVRNAGRLMKEAGADAVKLEGGAEI----------------AETIKALVDA--GIPVMGHIGLTPQSVHQLGG 150 (261)
T ss_dssp T-SSHHHHHHHHHHHHHTTT-SEEEEEBSGGG----------------HHHHHHHHHT--T--EEEEEES-GGGHHHHTS
T ss_pred c-CCHHHHHHHHHHHHHhcCCCEEEeccchhH----------------HHHHHHHHHC--CCcEEEEecCchhheeccCC
Confidence 3 455666666677777899999999986421 5667777765 8999885 33
Q ss_pred C----CCHHHHHHHH------H-cCcCeeEE
Q 017148 216 I----NTVDEVNAAL------R-KGAHHVMV 235 (376)
Q Consensus 216 I----~s~~da~~~l------~-~Gad~Vmi 235 (376)
- .|.+++.+++ + .||-++.+
T Consensus 151 yr~qGk~~~~a~~l~~~A~ale~AGaf~ivl 181 (261)
T PF02548_consen 151 YRVQGKTAEEAEKLLEDAKALEEAGAFAIVL 181 (261)
T ss_dssp S--CSTSHHHHHHHHHHHHHHHHHT-SEEEE
T ss_pred ceEEecCHHHHHHHHHHHHHHHHcCccEEee
Confidence 2 2555555443 2 58877764
No 347
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=94.07 E-value=2.1 Score=42.40 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=68.4
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCcc-EEEEccCccccCCCCCCCCCCC
Q 017148 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd-~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|+..+.+.+++.+ +. .++.||.+|.-.. .+++|+...+..+ .+.|.. .+.+|-++..|... ..
T Consensus 208 ~s~~~~n~~LL~~----~a-~~gkPVilk~G~~----~t~~e~~~Ave~i-~~~Gn~~i~L~erg~s~yp~~------~~ 271 (360)
T PRK12595 208 GARNMQNFELLKA----AG-RVNKPVLLKRGLS----ATIEEFIYAAEYI-MSQGNGQIILCERGIRTYEKA------TR 271 (360)
T ss_pred CcccccCHHHHHH----HH-ccCCcEEEeCCCC----CCHHHHHHHHHHH-HHCCCCCEEEECCccCCCCCC------CC
Confidence 6677777655544 33 3588999996652 2344555444444 357774 45556333322110 11
Q ss_pred CcccHHHHHHHHhhCCCCeEEEecCCCC----H--HHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 191 PPLKYEYYYALLRDFPDLTFTLNGGINT----V--DEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~nGgI~s----~--~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
..+++..+..+++.+ ++||+.+-+=.. . .-+..++..||||++|=+=+ ||..
T Consensus 272 ~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~ 329 (360)
T PRK12595 272 NTLDISAVPILKQET-HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP--DPAV 329 (360)
T ss_pred CCcCHHHHHHHHHHh-CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC--CCCC
Confidence 224677787777765 899999533222 2 24445667899999998766 7765
No 348
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.06 E-value=0.89 Score=43.05 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=63.8
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccE-EEEccCccccCCCCCCCCCCC
Q 017148 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH-FIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~-I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|+..+++.+++.++ ..++.||.+|.... .+++++...+.. +...|-.. +.+|.+.....++ ..
T Consensus 117 ga~~~~n~~LL~~~-----a~~gkPV~lk~G~~----~s~~e~~~A~e~-i~~~Gn~~i~L~~rG~~t~~~Y------~~ 180 (266)
T PRK13398 117 GSRNMQNFELLKEV-----GKTKKPILLKRGMS----ATLEEWLYAAEY-IMSEGNENVVLCERGIRTFETY------TR 180 (266)
T ss_pred CcccccCHHHHHHH-----hcCCCcEEEeCCCC----CCHHHHHHHHHH-HHhcCCCeEEEEECCCCCCCCC------CH
Confidence 66677776665554 34689999996653 134455444333 34577754 4456544211111 11
Q ss_pred CcccHHHHHHHHhhCCCCeEEEe-cCCCC-----HHHHHHHHHcCcCeeEEch
Q 017148 191 PPLKYEYYYALLRDFPDLTFTLN-GGINT-----VDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~n-GgI~s-----~~da~~~l~~Gad~VmiGR 237 (376)
..+++..+..+++.+ ++||+.+ .-... ...+..++..||||+||=+
T Consensus 181 ~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~ 232 (266)
T PRK13398 181 NTLDLAAVAVIKELS-HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEV 232 (266)
T ss_pred HHHHHHHHHHHHhcc-CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEec
Confidence 233455566655554 7999993 44444 5566677778999999854
No 349
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=94.01 E-value=2.7 Score=40.78 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHHHhcccCccEEEEec-C-CCCC--------CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCC
Q 017148 116 MLDPKFVGEAMSVIAANTNVPVSVKCR-I-GVDD--------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA 185 (376)
Q Consensus 116 ~~~~~~~~eiv~~v~~~~~~pv~vKiR-~-g~~~--------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~ 185 (376)
..+.+...++++..+. .++.|-.-+- + |.++ ..+.++..+|+ ++.|+|.+.+.-++..-.+..+
T Consensus 122 eeNI~~T~evv~~Ah~-~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv----~~TgvD~LAvaiGt~HG~Y~~~- 195 (321)
T PRK07084 122 EENVALTKKVVEYAHQ-FDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFV----KKTGVDSLAISIGTSHGAYKFK- 195 (321)
T ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEEeeecCccCCccCcccccCCHHHHHHHH----HHhCCCEEeeccccccccccCC-
Confidence 3455666677666543 3444433221 1 1111 12355655554 4689999999877642111110
Q ss_pred CCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017148 186 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 186 ~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+....+.++++.++++.+..+++|++.-|+=-.+++..+.+. .|.|
T Consensus 196 ~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 196 PGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 000025678999999888765799999999877765555554 4443
No 350
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=93.93 E-value=4.9 Score=36.61 Aligned_cols=181 Identities=15% Similarity=0.202 Sum_probs=100.4
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccc--cchhhhhhccCCCCCCEEEEecCC-CHHHHHHHHHHHHHCCCCE
Q 017148 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQ--QGNLDRFLAFSPEQHPIVLQIGGS-NLDNLAKATELANAYNYDE 93 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~--~~~~~~~~~~~~~~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~ 93 (376)
+|.|...=..++...| + .+.+++.+..--+. .....++.+.-+. .+ .+-++-+ +++ +..+.+++.+.|.
T Consensus 7 CGlt~~eda~~a~~~g-a--d~iG~If~~~SpR~Vs~~~a~~i~~~v~~-~~-~VgVf~n~~~~---~i~~i~~~~~ld~ 78 (208)
T COG0135 7 CGLTRLEDAKAAAKAG-A--DYIGFIFVPKSPRYVSPEQAREIASAVPK-VK-VVGVFVNESIE---EILEIAEELGLDA 78 (208)
T ss_pred CCCCCHHHHHHHHHcC-C--CEEEEEEcCCCCCcCCHHHHHHHHHhCCC-CC-EEEEECCCCHH---HHHHHHHhcCCCE
Confidence 4667766666666554 3 34445554421111 1122233332222 22 3334443 333 3455667788999
Q ss_pred EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc
Q 017148 94 INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 94 IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
|.||.- .+++++ +.++...++||.-=++..-.. +. +. ......-+|.+.+.
T Consensus 79 VQlHG~-----------------e~~~~~----~~l~~~~~~~v~kai~v~~~~--~~-~~-----~~~~~~~~d~~LlD 129 (208)
T COG0135 79 VQLHGD-----------------EDPEYI----DQLKEELGVPVIKAISVSEEG--DL-EL-----AAREEGPVDAILLD 129 (208)
T ss_pred EEECCC-----------------CCHHHH----HHHHhhcCCceEEEEEeCCcc--ch-hh-----hhhccCCccEEEEc
Confidence 999842 233333 344444456665444543221 11 11 11234668888887
Q ss_pred cCccc-cCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc-CeeEEchHHhhCCch
Q 017148 174 SRKAL-LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA-HHVMVGRAAYQNPWY 245 (376)
Q Consensus 174 ~r~~~-~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga-d~VmiGRa~l~~P~l 245 (376)
..... ++|. + ...+|..+... ....|++..||| +++.+.++++.++ .+|=+.+|.=.+|-.
T Consensus 130 a~~~~~~GGt-G------~~fDW~~l~~~---~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~pG~ 192 (208)
T COG0135 130 AKVPGLPGGT-G------QTFDWNLLPKL---RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSPGI 192 (208)
T ss_pred CCCCCCCCCC-C------cEECHHHhccc---cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccccccCCCC
Confidence 65432 2332 2 12346655443 136789999999 8999999999777 999999999888853
No 351
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.92 E-value=6.1 Score=37.76 Aligned_cols=149 Identities=13% Similarity=0.250 Sum_probs=90.0
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 64 QHPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|++++|=+. +.+ ....+.++||+-|.+-.+ --.++.+.+...++++-.+. .++.|-.-+-
T Consensus 74 ~VPValHLDH~~~~e----~i~~ai~~GftSVM~DgS------------~lp~eeNi~~T~~vv~~Ah~-~gvsVEaElG 136 (284)
T PRK12857 74 SVPVALHLDHGTDFE----QVMKCIRNGFTSVMIDGS------------KLPLEENIALTKKVVEIAHA-VGVSVEAELG 136 (284)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCeEEEeCC------------CCCHHHHHHHHHHHHHHHHH-cCCEEEEEee
Confidence 34666666433 222 233444456666665421 11234566777777776653 3443332221
Q ss_pred -C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCC
Q 017148 143 -I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDL 208 (376)
Q Consensus 143 -~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~i 208 (376)
+ |-++ ..+.++..+|+ ++.|+|.+.|.-++.. |.+ .+.++++.+.++.+.. ++
T Consensus 137 ~vgg~e~~~~~~~~~~~~T~pe~a~~Fv----~~TgvD~LAvaiGt~HG~y~~--------~p~Ld~~~L~~i~~~~-~v 203 (284)
T PRK12857 137 KIGGTEDDITVDEREAAMTDPEEARRFV----EETGVDALAIAIGTAHGPYKG--------EPKLDFDRLAKIKELV-NI 203 (284)
T ss_pred ecCCccCCCCcccchhhcCCHHHHHHHH----HHHCCCEEeeccCccccccCC--------CCcCCHHHHHHHHHHh-CC
Confidence 1 1111 12455555554 4789999999877642 222 2457799999998765 89
Q ss_pred eEEEecCCCCH-HHHHHHHHcCcCeeEEchHHhhC
Q 017148 209 TFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 209 pVi~nGgI~s~-~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
|++.-||=-.+ +++.++++.|+.=|=+++.+...
T Consensus 204 PLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a 238 (284)
T PRK12857 204 PIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIREA 238 (284)
T ss_pred CEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHHH
Confidence 99988876655 56777888999999999987544
No 352
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.92 E-value=0.72 Score=44.13 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=46.3
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
++|+|.|-+...+.. .+ -+.+..+.+..+++.+.++||| +.+.+.+..++|+|.+.+|.-...-|
T Consensus 217 ~~gaDiI~LDnm~~e-------------~v-k~av~~~~~~~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~ 281 (289)
T PRK07896 217 AEGAELVLLDNFPVW-------------QT-QEAVQRRDARAPTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTHSVP 281 (289)
T ss_pred HcCCCEEEeCCCCHH-------------HH-HHHHHHHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCCC
Confidence 589999988743310 00 1122222223467889999999 88999999999999999998666455
Q ss_pred ch
Q 017148 244 WY 245 (376)
Q Consensus 244 ~l 245 (376)
++
T Consensus 282 ~~ 283 (289)
T PRK07896 282 VL 283 (289)
T ss_pred cc
Confidence 54
No 353
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.92 E-value=0.8 Score=41.87 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCC--eEEEecCCCCHHHHHHHHHc
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL--TFTLNGGINTVDEVNAALRK 228 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~i--pVi~nGgI~s~~da~~~l~~ 228 (376)
.++..+. ++.+.+.|+..+.|.-++.. ..+.+.++++++++- -+||.|-|.|.++++++++.
T Consensus 24 ~~~a~~~-~~al~~~Gi~~iEit~~~~~---------------a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a 87 (213)
T PRK06552 24 KEEALKI-SLAVIKGGIKAIEVTYTNPF---------------ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA 87 (213)
T ss_pred HHHHHHH-HHHHHHCCCCEEEEECCCcc---------------HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc
Confidence 3344443 44556799999999876531 267788888776432 37999999999999999999
Q ss_pred CcCeeE
Q 017148 229 GAHHVM 234 (376)
Q Consensus 229 Gad~Vm 234 (376)
||++++
T Consensus 88 GA~Fiv 93 (213)
T PRK06552 88 GAQFIV 93 (213)
T ss_pred CCCEEE
Confidence 999988
No 354
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.89 E-value=0.57 Score=42.44 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=48.9
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
++.+.+.|+..|.|.-++.. ..+.+.++++++++ -+|+.|-|.|.++++++++.|+++++-
T Consensus 22 a~al~~gGi~~iEit~~tp~---------------a~~~I~~l~~~~~~-~~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 22 ARALAAGGLPAIEITLRTPA---------------ALDAIRAVAAEVEE-AIVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred HHHHHHCCCCEEEEeCCCcc---------------HHHHHHHHHHHCCC-CEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 34455799999999876531 26778888877765 479999999999999999999998774
No 355
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=93.88 E-value=0.29 Score=50.57 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=52.4
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcC---eeEEchHH
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH---HVMVGRAA 239 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad---~VmiGRa~ 239 (376)
.+.|+|+|.+..-... . + +. ..++..++.+.++.+. .++||++-||| +++++.+++++|++ +|.+++++
T Consensus 407 ~~~gadyi~~gpif~t--~-t-k~--~~~~~g~~~~~~~~~~-~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i 478 (502)
T PLN02898 407 WKDGADYIGCGGVFPT--N-T-KA--NNKTIGLDGLREVCEA-SKLPVVAIGGI-SASNAASVMESGAPNLKGVAVVSAL 478 (502)
T ss_pred hhcCCCEEEECCeecC--C-C-CC--CCCCCCHHHHHHHHHc-CCCCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHH
Confidence 3578999886532111 0 0 00 1234457777777664 48999999999 59999999998888 99999999
Q ss_pred hhCCc
Q 017148 240 YQNPW 244 (376)
Q Consensus 240 l~~P~ 244 (376)
+..+.
T Consensus 479 ~~~~d 483 (502)
T PLN02898 479 FDQED 483 (502)
T ss_pred hcCCC
Confidence 86544
No 356
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=93.86 E-value=0.6 Score=44.40 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=61.3
Q ss_pred HHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH
Q 017148 121 FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 121 ~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~ 199 (376)
-+.+.++.+|+.. ..++.|-+ ++.++..+ ++ ++|+|.|.+|..+... ..+.+.
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv-------~tleea~e----a~-~~GaDiI~lDn~~~e~--------------l~~~v~ 227 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEA-------DTIEQALT----VL-QASPDILQLDKFTPQQ--------------LHHLHE 227 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC-------CCHHHHHH----HH-HcCcCEEEECCCCHHH--------------HHHHHH
Confidence 3556777777653 34455543 24555433 22 6999999999644210 012233
Q ss_pred HHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 200 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
.+....+++.|.++||| +++.+.+..++|+|.+.+|--..+.|
T Consensus 228 ~l~~~~~~~~leasGGI-~~~ni~~ya~~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 228 RLKFFDHIPTLAAAGGI-NPENIADYIEAGIDLFITSAPYYAAP 270 (277)
T ss_pred HHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcceecCc
Confidence 33222357889999999 89999999999999999987544444
No 357
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=93.83 E-value=2.7 Score=40.54 Aligned_cols=132 Identities=14% Similarity=0.221 Sum_probs=75.8
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017148 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
.|+++.|=+. +.+ .++.+.++||+-|.+-.+. -.++.+.+...++++-.+. .++.|-.-+-
T Consensus 75 VPValHLDHg~~~e----~i~~ai~~GftSVM~DgS~------------l~~eeNi~~T~~vve~Ah~-~gv~VEaElG~ 137 (307)
T PRK05835 75 IPVALHLDHGTTFE----SCEKAVKAGFTSVMIDASH------------HAFEENLELTSKVVKMAHN-AGVSVEAELGR 137 (307)
T ss_pred CeEEEECCCCCCHH----HHHHHHHcCCCEEEEeCCC------------CCHHHHHHHHHHHHHHHHH-cCCEEEEEecc
Confidence 4666666543 322 2344555677766664321 1123556666777766543 2444333221
Q ss_pred C-CCCC----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCCCe
Q 017148 143 I-GVDD----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLT 209 (376)
Q Consensus 143 ~-g~~~----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ip 209 (376)
+ |.++ ..+.++..+|+ ++.|+|++.|.-++.. |+.. ..|.++++.+.++.+.. ++|
T Consensus 138 vgg~ed~~~~~~~~~~~TdPeeA~~Fv----~~TgvD~LAvaiGt~HG~Yk~~------~~p~L~f~~L~~I~~~~-~iP 206 (307)
T PRK05835 138 LMGIEDNISVDEKDAVLVNPKEAEQFV----KESQVDYLAPAIGTSHGAFKFK------GEPKLDFERLQEVKRLT-NIP 206 (307)
T ss_pred cCCccCCcccccccccCCCHHHHHHHH----HhhCCCEEEEccCccccccCCC------CCCccCHHHHHHHHHHh-CCC
Confidence 1 1111 12345555554 4789999999877642 2200 12567899999998765 999
Q ss_pred EEEecCCCCHHHHHH
Q 017148 210 FTLNGGINTVDEVNA 224 (376)
Q Consensus 210 Vi~nGgI~s~~da~~ 224 (376)
++.-|+=-.+++..+
T Consensus 207 LVLHGgSGip~e~~~ 221 (307)
T PRK05835 207 LVLHGASAIPDDVRK 221 (307)
T ss_pred EEEeCCCCCchHHhh
Confidence 999999888886433
No 358
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=93.76 E-value=6.5 Score=37.48 Aligned_cols=156 Identities=14% Similarity=0.102 Sum_probs=90.0
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEE
Q 017148 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSV 139 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~v 139 (376)
.....|+++++.+.+.++..+.|+.++++|+|++-+- .|... . .+.+.+.+-.+.|.+++ ++||.+
T Consensus 67 ~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~--~P~y~-------~----~~~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 67 AKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAI--TPFYY-------K----FSFEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred hCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCC-------C----CCHHHHHHHHHHHHHhcCCCCEEE
Confidence 3456689999999999999999999999999999874 24321 1 23466788888888888 899988
Q ss_pred EecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCC
Q 017148 140 KCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGIN 217 (376)
Q Consensus 140 KiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~ 217 (376)
---++.... -+. ++ +.++.+.-.+-.|-.+.+ +...+.++++..+ ++.| .+|.
T Consensus 134 Yn~P~~tg~~l~~-~~---~~~L~~~pnivgiK~s~~------------------d~~~~~~~~~~~~~~~~v-~~G~-- 188 (288)
T cd00954 134 YHIPALTGVNLTL-EQ---FLELFEIPNVIGVKFTAT------------------DLYDLERIRAASPEDKLV-LNGF-- 188 (288)
T ss_pred EeCccccCCCCCH-HH---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhCCCCcEE-EEec--
Confidence 533221111 122 22 233333122322222211 1333444544443 4433 3443
Q ss_pred CHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017148 218 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+ ..+...+..|++|.+.|-+-+ -|..+.+.++....|
T Consensus 189 d-~~~~~~~~~G~~G~i~~~~n~-~P~~~~~l~~~~~~g 225 (288)
T cd00954 189 D-EMLLSALALGADGAIGSTYNV-NGKRYRKIFEAFNAG 225 (288)
T ss_pred h-HHHHHHHHcCCCEEEeChhhh-CHHHHHHHHHHHHcC
Confidence 1 234455668999998875543 477655444444344
No 359
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=93.74 E-value=1.3 Score=42.53 Aligned_cols=152 Identities=16% Similarity=0.305 Sum_probs=88.2
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 64 QHPIVLQIGG-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
..|+.++|=+ .+.+ ..+++.++||+-|.+-.+ --.++.+.+...++++-.+. .++.|-.-+-
T Consensus 73 ~vPValHLDH~~~~e----~i~~ai~~GftSVM~DgS------------~l~~eeNi~~T~~vv~~ah~-~gv~VEaElG 135 (287)
T PF01116_consen 73 SVPVALHLDHGKDFE----DIKRAIDAGFTSVMIDGS------------ALPFEENIAITREVVEYAHA-YGVSVEAELG 135 (287)
T ss_dssp TSEEEEEEEEE-SHH----HHHHHHHHTSSEEEEE-T------------TS-HHHHHHHHHHHHHHHHH-TT-EEEEEES
T ss_pred CCCEEeecccCCCHH----HHHHHHHhCcccccccCC------------cCCHHHHHHHHHHHHHhhhh-hCCEEEEEee
Confidence 3455555532 2322 223344447777666432 11133556667777776554 3444443332
Q ss_pred -CC-CCC-----------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHHHHHhhCCC
Q 017148 143 -IG-VDD-----------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPD 207 (376)
Q Consensus 143 -~g-~~~-----------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 207 (376)
+| .++ ..+.++..+|+ ++.|+|.|.|.-++.. |++. ..|.++++.+.++.+..++
T Consensus 136 ~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv----~~TgvD~LAvaiGt~HG~y~~~------~~p~Ld~~~L~~I~~~~~~ 205 (287)
T PF01116_consen 136 HIGGKEDGIESEEETESLYTDPEEAKEFV----EETGVDALAVAIGTAHGMYKGG------KKPKLDFDRLKEIREAVPD 205 (287)
T ss_dssp BSSSSCTTCSSSTT-TTCSSSHHHHHHHH----HHHTTSEEEE-SSSBSSSBSSS------SSTC--HHHHHHHHHHHHT
T ss_pred eeeccCCCccccccccccccCHHHHHHHH----HHhCCCEEEEecCccccccCCC------CCcccCHHHHHHHHHhcCC
Confidence 11 111 12355555554 5789999999877752 2220 1355779999999876448
Q ss_pred CeEEEecCCCCHH-HHHHHHHcCcCeeEEchHHhhC
Q 017148 208 LTFTLNGGINTVD-EVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 208 ipVi~nGgI~s~~-da~~~l~~Gad~VmiGRa~l~~ 242 (376)
+|++.-||=-.++ ++.++++.|+.=|=+++.+..-
T Consensus 206 iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~a 241 (287)
T PF01116_consen 206 IPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRRA 241 (287)
T ss_dssp SEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHHH
Confidence 9999999987775 7888889999999999987644
No 360
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.62 E-value=1.7 Score=37.75 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHH
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 156 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~ 156 (376)
+.+.+.++.+.+.|++.|.+-.--+.+... .. ..+ +.+..+++..+.|+.+.+...-.. ... .
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~--~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~ 74 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEA--ET------DDK----EVLKEVAAETDLPLGVQLAINDAA-AAV----D 74 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccC--CC------ccc----cHHHHHHhhcCCcEEEEEccCCch-hhh----h
Confidence 566777788888899998875321111100 00 111 344555555678888876543111 111 1
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
..++.+.++|+|+|.+|+..... +....+.+.++++.++++||+..-...+..+...+.+.|+|.+.+.
T Consensus 75 ~~a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~ 143 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLG 143 (200)
T ss_pred HHHHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEc
Confidence 11234567999999999754210 0111445666666555777766544333222212345899999987
Q ss_pred hH
Q 017148 237 RA 238 (376)
Q Consensus 237 Ra 238 (376)
..
T Consensus 144 ~~ 145 (200)
T cd04722 144 NG 145 (200)
T ss_pred CC
Confidence 65
No 361
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=93.59 E-value=1.8 Score=42.68 Aligned_cols=123 Identities=9% Similarity=0.011 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.+-++...+.||..+-+..| .+++.-.+.++++|+.++ +.+.|-..-+|+ .+
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg-----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~----~~ 196 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG-----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYS----RK 196 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC-----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCC----HH
Confidence 5777777777777789999987432 134566778888888774 445444443443 33
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHH-cCc
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
+.+++ .+.+++.++.++. ..+++-+++.++++++.. .++||.+.=.+.+..++.++++ ..+
T Consensus 197 ~A~~~-~~~l~~~~~~~~E----------------eP~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~ 259 (352)
T cd03328 197 QALAL-ARAFADEGVTWFE----------------EPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAV 259 (352)
T ss_pred HHHHH-HHHHHHhCcchhh----------------CCCChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCC
Confidence 44444 3445666665543 112333466677777662 2799988778999999999999 458
Q ss_pred CeeEE
Q 017148 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
|.|++
T Consensus 260 div~~ 264 (352)
T cd03328 260 DVLQA 264 (352)
T ss_pred CEEec
Confidence 88765
No 362
>PRK15452 putative protease; Provisional
Probab=93.58 E-value=3.4 Score=42.03 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=77.1
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKV 161 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~ 161 (376)
.++.+.++|+|.|=+........ .+...| ..+.+.+.++-.++ .++.+.+.+..-..+ .+++++.+.+..+
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R-~~~~~f------~~edl~eav~~ah~-~g~kvyvt~n~i~~e-~el~~~~~~l~~l 85 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLR-VRNNEF------NHENLALGINEAHA-LGKKFYVVVNIAPHN-AKLKTFIRDLEPV 85 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchh-hhccCC------CHHHHHHHHHHHHH-cCCEEEEEecCcCCH-HHHHHHHHHHHHH
Confidence 44556688999998854322211 111111 23456666665543 356666665542322 3455555555544
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec--CCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG--gI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
.+.|+|+|+|+. +..+.-+++..|++||+++- .|++...+.-..+.|++.|.+.|-+
T Consensus 86 -~~~gvDgvIV~d--------------------~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 86 -IAMKPDALIMSD--------------------PGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred -HhCCCCEEEEcC--------------------HHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 468999999874 22233334445788888765 4677777777777899999888865
No 363
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.58 E-value=1.2 Score=43.05 Aligned_cols=126 Identities=12% Similarity=0.004 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.++|=+|.. +|+ ...-..+.-.++++.+.+.+ .+||.+-+.. .+++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~Gs--------tGE---~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-----~~t~ 90 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGT--------FGE---CATLTWEEKQAFVATVVETVAGRVPVFVGATT-----LNTR 90 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------ccc---chhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-----CCHH
Confidence 6788888999999999999988752 233 22334455556666655544 4788775432 2344
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.+..+++||+. .|--.+++.+.++.
T Consensus 91 ~ai~~-a~~A~~~Gad~vlv~~P~--y~~~~-------~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 91 DTIAR-TRALLDLGADGTMLGRPM--WLPLD-------VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHHH-HHHHHHhCCCEEEECCCc--CCCCC-------HHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 55554 456678999999987521 11000 0111455566665543577652 23333555555554
No 364
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.36 E-value=1.1 Score=41.04 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
.++..+. ++.+.+.|++.|.|.-++. -..+.++++++++++ -+|+.|-|.+.++++.+++.||
T Consensus 26 ~~~a~~i-~~al~~~Gi~~iEitl~~~---------------~~~~~I~~l~~~~p~-~~IGAGTVl~~~~a~~a~~aGA 88 (212)
T PRK05718 26 LEDAVPL-AKALVAGGLPVLEVTLRTP---------------AALEAIRLIAKEVPE-ALIGAGTVLNPEQLAQAIEAGA 88 (212)
T ss_pred HHHHHHH-HHHHHHcCCCEEEEecCCc---------------cHHHHHHHHHHHCCC-CEEEEeeccCHHHHHHHHHcCC
Confidence 4444443 3445579999999985442 116778888888876 5799999999999999999999
Q ss_pred CeeEE
Q 017148 231 HHVMV 235 (376)
Q Consensus 231 d~Vmi 235 (376)
++++.
T Consensus 89 ~Fivs 93 (212)
T PRK05718 89 QFIVS 93 (212)
T ss_pred CEEEC
Confidence 98875
No 365
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.30 E-value=1 Score=43.21 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=57.0
Q ss_pred ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017148 135 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 135 ~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
.|+.+.+-... +.+...+.+ +.+++.|+++|.+|...... |. + ..|+.+.++++.. ++||+.-
T Consensus 116 ~~~~~ql~~~~-~~~~~~~~i----~~~~~~g~~~i~l~~~~p~~-~~-----~----~~~~~i~~l~~~~-~~pvivK- 178 (299)
T cd02809 116 GPRWFQLYVPR-DREITEDLL----RRAEAAGYKALVLTVDTPVL-GR-----R----LTWDDLAWLRSQW-KGPLILK- 178 (299)
T ss_pred CCeEEEEeecC-CHHHHHHHH----HHHHHcCCCEEEEecCCCCC-CC-----C----CCHHHHHHHHHhc-CCCEEEe-
Confidence 57777765432 222233332 23356899999999765421 11 1 2477888887765 7898876
Q ss_pred CCCCHHHHHHHHHcCcCeeEE
Q 017148 215 GINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 215 gI~s~~da~~~l~~Gad~Vmi 235 (376)
++.+.+++..+.+.|+|+|.+
T Consensus 179 ~v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 179 GILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred ecCCHHHHHHHHHCCCCEEEE
Confidence 479999999999999999987
No 366
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.30 E-value=0.62 Score=42.69 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=80.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
.+.++.+-|--.|+..+...+ +.++|+|.+.+|..++ .+.+.+.++++++. +.-+.|-+-
T Consensus 55 ~~~~v~~DLK~~Di~~~v~~~--~~~~Gad~vTvH~~a~-----------------~~~i~~~~~~~~~~-g~~~~V~ll 114 (216)
T PRK13306 55 PDKIIVADTKIADAGKILAKM--AFEAGADWVTVICAAH-----------------IPTIKAALKVAKEF-NGEIQIELY 114 (216)
T ss_pred CCCEEEEEEeecCCcHHHHHH--HHHCCCCEEEEeCCCC-----------------HHHHHHHHHHHHHc-CCEEEEEEC
Confidence 356788888777776555433 6688999999985321 23355556655532 333333333
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc-cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHH
Q 017148 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE 221 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~d 221 (376)
.+++ .+++ . ...+.|++.+.+|-.. +...|-. ..+...+.++++.+ .+..+...|||+ ++.
T Consensus 115 ts~~----~~~l----~-~~~~~~~~~~vl~~a~~~~~~G~v------~s~~~~~~ir~~~~--~~~~i~V~gGI~-~~~ 176 (216)
T PRK13306 115 GNWT----WEQA----Q-QWRDAGISQVIYHRSRDAQLAGVA------WGEKDLNKVKKLSD--MGFKVSVTGGLV-VED 176 (216)
T ss_pred CCCC----HHHH----H-HHHcCChhhhhhhhhhhhhhcCCC------CCHHHHHHHHHHhc--CCCeEEEcCCCC-Hhh
Confidence 3322 2222 1 1224666666666332 2222211 01111334445443 245588999995 454
Q ss_pred HHHHHHcCcCeeEEchHHhhCCc
Q 017148 222 VNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 222 a~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
+....+.|||.+.+||++...++
T Consensus 177 ~~~~~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 177 LKLFKGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred HHHHhcCCCCEEEECCcccCCCC
Confidence 44444479999999999876666
No 367
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=93.29 E-value=3 Score=40.90 Aligned_cols=158 Identities=11% Similarity=0.151 Sum_probs=89.6
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017148 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
.|+++.|=+. +.+ .++++.++||+-|.+-.+.=..+ .-...++.+.+...++++-... .++.|-.-+-.
T Consensus 74 VPValHLDHg~~~e----~i~~Ai~~GFtSVMiDgS~l~~~-----~~~~p~eENI~~Tkevve~Ah~-~GvsVEaELG~ 143 (347)
T TIGR01521 74 IPVVMHQDHGNSPA----TCQRAIQLGFTSVMMDGSLREDA-----KTPADYDYNVRVTAEVVAFAHA-VGASVEGELGC 143 (347)
T ss_pred CcEEEECCCCCCHH----HHHHHHHcCCCEEeecCcCCccc-----CCCCCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 5777777544 333 34445667888887764321000 0022345667777777776553 23333222211
Q ss_pred --CCC-------C-------------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHH
Q 017148 144 --GVD-------D-------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 144 --g~~-------~-------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~ 199 (376)
|.+ + ..+.++..+|+ ++.|+|.+.|.-+|.. |.+... ..-+.++++.+.
T Consensus 144 igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv----~~TgvD~LAvaiGt~HG~Yk~~~~---p~~~~Ld~~rL~ 216 (347)
T TIGR01521 144 LGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFV----KKTKVDALAVAIGTSHGAYKFTRK---PTGEVLAIQRIE 216 (347)
T ss_pred cccccccccccccCcccccccchhhcCCCHHHHHHHH----HHHCcCEEehhcccccCCcCCCCC---CChhhcCHHHHH
Confidence 111 0 12345555554 4789999998877642 222100 001237799999
Q ss_pred HHHhhCCCCeEEEecCCCCH----------------------HHHHHHHHcCcCeeEEchHH
Q 017148 200 ALLRDFPDLTFTLNGGINTV----------------------DEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~----------------------~da~~~l~~Gad~VmiGRa~ 239 (376)
++.+..+++|++.-|+=-.+ +++.++++.|+.=|=|++.+
T Consensus 217 eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl 278 (347)
T TIGR01521 217 EIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDL 278 (347)
T ss_pred HHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHH
Confidence 98877547999999988766 55666666666666666654
No 368
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=93.22 E-value=3.3 Score=40.94 Aligned_cols=134 Identities=13% Similarity=0.129 Sum_probs=79.2
Q ss_pred CEEEEecCCCHH-HHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017148 66 PIVLQIGGSNLD-NLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 66 p~~vQL~g~~~~-~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
|+-..+...+++ .+.++.+..++.||..+-+..| . ++++.-.+.|+++|+.++- .+++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg-------------~---~~~~~d~~~v~~~re~~g~--~~~l~~D 193 (368)
T TIGR02534 132 DVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIG-------------A---RDPADDVAHVVAIAKALGD--RASVRVD 193 (368)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeC-------------C---CCcHHHHHHHHHHHHhcCC--CcEEEEE
Confidence 333334344444 3444444445679999977432 1 2345556778888887643 2344443
Q ss_pred CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017148 145 VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
....-+.++..+++ +.+++.++.+|. ..+++-+++.++++.+. ..+||.+.=.+.+..++.+
T Consensus 194 aN~~~~~~~A~~~~-~~l~~~~~~~iE----------------eP~~~~d~~~~~~l~~~-~~~pia~dE~~~~~~~~~~ 255 (368)
T TIGR02534 194 VNAAWDERTALHYL-PQLADAGVELIE----------------QPTPAENREALARLTRR-FNVPIMADESVTGPADALA 255 (368)
T ss_pred CCCCCCHHHHHHHH-HHHHhcChhheE----------------CCCCcccHHHHHHHHHh-CCCCEEeCcccCCHHHHHH
Confidence 22222344555543 445666766544 11222335666677665 4899999888999999999
Q ss_pred HHH-cCcCeeEE
Q 017148 225 ALR-KGAHHVMV 235 (376)
Q Consensus 225 ~l~-~Gad~Vmi 235 (376)
+++ .++|.|++
T Consensus 256 ~~~~~~~d~~~~ 267 (368)
T TIGR02534 256 IAKASAADVFAL 267 (368)
T ss_pred HHHhCCCCEEEE
Confidence 998 66898875
No 369
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.10 E-value=1.3 Score=38.94 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 154 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~ 154 (376)
+.+.+.+.++.+.+.|+++|.++. +.+..+.+.+.. ..+|+.+++..+... ...++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------------~~i~~~~~~~~~-~~~~v~~~v~~~~~~-~~~~~~ 67 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------------GYVRLAADALAG-SDVPVIVVVGFPTGL-TTTEVK 67 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------------HHHHHHHHHhCC-CCCeEEEEecCCCCC-CcHHHH
Confidence 788899999999999999999873 223333333221 137888887654311 223444
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEE-e--cCCCCHHHHHHH---H-
Q 017148 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-N--GGINTVDEVNAA---L- 226 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~-n--GgI~s~~da~~~---l- 226 (376)
++.+ +.+.+.|+|++.++.-.. ...+. + .....+.+.++++.. .++||+. | +...+.+...++ .
T Consensus 68 ~~~a-~~a~~~Gad~i~v~~~~~--~~~~~-~----~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~ 139 (201)
T cd00945 68 VAEV-EEAIDLGADEIDVVINIG--SLKEG-D----WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAA 139 (201)
T ss_pred HHHH-HHHHHcCCCEEEEeccHH--HHhCC-C----HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4443 344578999999874221 00000 0 011145666666653 3788774 2 222366666654 2
Q ss_pred HcCcCeeEEchH
Q 017148 227 RKGAHHVMVGRA 238 (376)
Q Consensus 227 ~~Gad~VmiGRa 238 (376)
+.|+|+|=...+
T Consensus 140 ~~g~~~iK~~~~ 151 (201)
T cd00945 140 EAGADFIKTSTG 151 (201)
T ss_pred HhCCCEEEeCCC
Confidence 379999876654
No 370
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=93.09 E-value=4.1 Score=40.02 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=79.5
Q ss_pred CCEEEEecCC-CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec-
Q 017148 65 HPIVLQIGGS-NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR- 142 (376)
Q Consensus 65 ~p~~vQL~g~-~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR- 142 (376)
.|+++.|=+. +.+ .++.+.++||+-|.+-.+. .+. +.-+..++.+.+...++++..+. .++.|-.-+-
T Consensus 76 VPVaLHLDHg~~~e----~i~~Ai~~GFtSVMiDgS~-l~~----~~~~~~~eeNI~~Trevve~Ah~-~GvsVEaELG~ 145 (347)
T PRK13399 76 IPICLHQDHGNSPA----TCQSAIRSGFTSVMMDGSL-LAD----GKTPASYDYNVDVTRRVTEMAHA-VGVSVEGELGC 145 (347)
T ss_pred CcEEEECCCCCCHH----HHHHHHhcCCCEEEEeCCC-CCC----CCCccCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 4667666443 322 2345556677777775432 111 11133456677788888877543 3555444331
Q ss_pred CC-CC-------C-------------CccHHHHHHHHHHHhhcCCccEEEEccCccc--cCCCCCCCCCCCCcccHHHHH
Q 017148 143 IG-VD-------D-------------HDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYY 199 (376)
Q Consensus 143 ~g-~~-------~-------------~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~--~~g~~~~~~~~~~~~~~~~v~ 199 (376)
+| .+ + ..+.++..+|+ ++.|+|.+.|.-+|.. |.+... ..-+.++++.++
T Consensus 146 igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv----~~TgvD~LAvaiGt~HG~Yk~~~~---p~~~~L~~drl~ 218 (347)
T PRK13399 146 LGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFV----QRTGVDALAIAIGTSHGAYKFTRK---PDGDILAIDRIE 218 (347)
T ss_pred ccCcccccccccCCccccccccccccCCCHHHHHHHH----HHHCcCEEhhhhccccCCcCCCCC---CChhhccHHHHH
Confidence 11 01 1 12355555554 4689999998766642 222100 011236789999
Q ss_pred HHHhhCCCCeEEEecCCCCHHHH
Q 017148 200 ALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 200 ~~~~~~~~ipVi~nGgI~s~~da 222 (376)
++.+..+++|++.-|+=-.+++.
T Consensus 219 eI~~~v~~vPLVLHGgSGvp~~~ 241 (347)
T PRK13399 219 EIHARLPNTHLVMHGSSSVPQEL 241 (347)
T ss_pred HHHhhcCCCCEEEeCCCCCCHHH
Confidence 98887657999999988776443
No 371
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=93.09 E-value=2.2 Score=41.47 Aligned_cols=124 Identities=13% Similarity=0.137 Sum_probs=77.4
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCcc
Q 017148 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS 150 (376)
Q Consensus 71 L~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~ 150 (376)
+...+++++.+.++...+.||..+-+..+ | +.-.+.++++|+.. | .+++++.....-+
T Consensus 128 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~------------------~~d~~~v~~vr~~~--~-~~~l~vDaN~~~~ 185 (324)
T TIGR01928 128 SGLANDEQMLKQIESLKATGYKRIKLKIT-P------------------QIMHQLVKLRRLRF--P-QIPLVIDANESYD 185 (324)
T ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C------------------chhHHHHHHHHHhC--C-CCcEEEECCCCCC
Confidence 44456788888888777889999987542 0 11135677777765 3 3445543222112
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
.++ +.. .+.+++.++.+|. . .+++-+++.++++++.. ++||.+.=.+.+..++.++++ ..
T Consensus 186 ~~~-a~~-~~~l~~~~~~~iE----e------------P~~~~~~~~~~~l~~~~-~~pia~dEs~~~~~~~~~~~~~~~ 246 (324)
T TIGR01928 186 LQD-FPR-LKELDRYQLLYIE----E------------PFKIDDLSMLDELAKGT-ITPICLDESITSLDDARNLIELGN 246 (324)
T ss_pred HHH-HHH-HHHHhhCCCcEEE----C------------CCChhHHHHHHHHHhhc-CCCEeeCCCcCCHHHHHHHHHcCC
Confidence 233 233 3455667776665 1 12222356667776654 899999888999999999998 56
Q ss_pred cCeeEE
Q 017148 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.+++
T Consensus 247 ~dvi~~ 252 (324)
T TIGR01928 247 VKVINI 252 (324)
T ss_pred CCEEEe
Confidence 888864
No 372
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.02 E-value=3.1 Score=40.81 Aligned_cols=119 Identities=11% Similarity=0.120 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
++++.+.++.+.+.||..+-+..+ ++.-.+.++++|+.++ .+++++..+..-+.++.
T Consensus 138 ~~~~~~~~~~~~~~Gf~~~KiKv~-------------------~~~d~~~l~~vr~~~g---~~~l~lDaN~~~~~~~a- 194 (354)
T cd03317 138 VEQLLKQIERYLEEGYKRIKLKIK-------------------PGWDVEPLKAVRERFP---DIPLMADANSAYTLADI- 194 (354)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecC-------------------hHHHHHHHHHHHHHCC---CCeEEEECCCCCCHHHH-
Confidence 377778888777889999987542 1123456777777653 45555533222223333
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeE
Q 017148 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM 234 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~Vm 234 (376)
.. .+.+++.++.+|. . .+++.+++..+++.+.. .+||.+.=.+.+.+++.++++ ..+|.++
T Consensus 195 ~~-~~~l~~~~i~~iE----e------------P~~~~d~~~~~~l~~~~-~~pia~dEs~~~~~~~~~~~~~~~~d~~~ 256 (354)
T cd03317 195 PL-LKRLDEYGLLMIE----Q------------PLAADDLIDHAELQKLL-KTPICLDESIQSAEDARKAIELGACKIIN 256 (354)
T ss_pred HH-HHHhhcCCccEEE----C------------CCChhHHHHHHHHHhhc-CCCEEeCCccCCHHHHHHHHHcCCCCEEE
Confidence 33 3445667776655 1 12222355566666654 899988888999999999998 4578887
Q ss_pred E
Q 017148 235 V 235 (376)
Q Consensus 235 i 235 (376)
+
T Consensus 257 i 257 (354)
T cd03317 257 I 257 (354)
T ss_pred e
Confidence 6
No 373
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=92.94 E-value=4.1 Score=40.26 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=78.0
Q ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCC
Q 017148 71 IGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDH 148 (376)
Q Consensus 71 L~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~ 148 (376)
+.+.+++.+.+.++...+.||..+-+.. .+.|+++|+.++ ..+.+-..-+|+
T Consensus 122 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKv------------------------~~~v~avre~~G~~~~l~vDaN~~w~-- 175 (361)
T cd03322 122 ASGRDIPELLEAVERHLAQGYRAIRVQL------------------------PKLFEAVREKFGFEFHLLHDVHHRLT-- 175 (361)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeeCH------------------------HHHHHHHHhccCCCceEEEECCCCCC--
Confidence 3455677777777767778999887622 567888888774 345444443443
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-
Q 017148 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR- 227 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~- 227 (376)
.++.+++ .+.+++.++.++. . .+++-+++.++++.+.. ++||.+.=.+.+++++..+++
T Consensus 176 --~~~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~~-~~pia~gE~~~~~~~~~~~i~~ 235 (361)
T cd03322 176 --PNQAARF-GKDVEPYRLFWME----D------------PTPAENQEAFRLIRQHT-ATPLAVGEVFNSIWDWQNLIQE 235 (361)
T ss_pred --HHHHHHH-HHHhhhcCCCEEE----C------------CCCcccHHHHHHHHhcC-CCCEEeccCCcCHHHHHHHHHh
Confidence 3344444 3445667777665 1 12223466777777654 799888777899999999998
Q ss_pred cCcCeeEE
Q 017148 228 KGAHHVMV 235 (376)
Q Consensus 228 ~Gad~Vmi 235 (376)
..+|.+++
T Consensus 236 ~a~di~~~ 243 (361)
T cd03322 236 RLIDYIRT 243 (361)
T ss_pred CCCCEEec
Confidence 45787765
No 374
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=92.92 E-value=0.93 Score=42.68 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
+.+...+-|+...+.|+|.||||+.+..+... +-+-....+.+..+|+.+++.++.|+++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~-----~i~~~~E~~rl~~~v~~i~~~~~~plSI 81 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGAD-----PVSVEEELERVIPVLEALRGELDVLISV 81 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC-----CCCHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 45666777777778899999999644332111 2222345567778889998877888877
No 375
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.92 E-value=1.3 Score=42.32 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=44.5
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+. +.+++.++.. ...|+-++||| +.+.+.+..++|+|.+.+|.-...-
T Consensus 212 ~~gaDiI~LDn~s~------------------e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galthsa 272 (281)
T PRK06106 212 ELGVDAVLLDNMTP------------------DTLREAVAIVAGRAITEASGRI-TPETAPAIAASGVDLISVGWLTHSA 272 (281)
T ss_pred HcCCCEEEeCCCCH------------------HHHHHHHHHhCCCceEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 58999998775432 2233333222 25789999999 8899999999999999999865534
Q ss_pred Cc
Q 017148 243 PW 244 (376)
Q Consensus 243 P~ 244 (376)
|+
T Consensus 273 ~~ 274 (281)
T PRK06106 273 PV 274 (281)
T ss_pred Cc
Confidence 44
No 376
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=92.91 E-value=3.9 Score=40.34 Aligned_cols=129 Identities=9% Similarity=0.034 Sum_probs=76.6
Q ss_pred ecCCCHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCc
Q 017148 71 IGGSNLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHD 149 (376)
Q Consensus 71 L~g~~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~ 149 (376)
+...+++++.+.++...+.| |..+-+..|- .+++.-.+.|+++|+.++- .+++++.....-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~----------------~~~~~d~~~v~avr~~~g~--~~~l~iDaN~~~ 199 (365)
T cd03318 138 LASGDTERDIAEAEEMLEAGRHRRFKLKMGA----------------RPPADDLAHVEAIAKALGD--RASVRVDVNQAW 199 (365)
T ss_pred EeCCCHHHHHHHHHHHHhCCCceEEEEEeCC----------------CChHHHHHHHHHHHHHcCC--CcEEEEECCCCC
Confidence 33345555555555555678 9999885431 1334445677888877642 233343222212
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-c
Q 017148 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-K 228 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~ 228 (376)
+.++.++++ +.+++.++.+|. ..+++-+++.++++.++ ..+||.+.=.+.+.+++.++++ .
T Consensus 200 ~~~~A~~~~-~~l~~~~~~~iE----------------eP~~~~~~~~~~~l~~~-~~~pia~dE~~~~~~~~~~~i~~~ 261 (365)
T cd03318 200 DESTAIRAL-PRLEAAGVELIE----------------QPVPRENLDGLARLRSR-NRVPIMADESVSGPADAFELARRG 261 (365)
T ss_pred CHHHHHHHH-HHHHhcCcceee----------------CCCCcccHHHHHHHHhh-cCCCEEcCcccCCHHHHHHHHHhC
Confidence 344544543 445667776554 11222236666777765 4899888777899999999998 4
Q ss_pred CcCeeEE
Q 017148 229 GAHHVMV 235 (376)
Q Consensus 229 Gad~Vmi 235 (376)
.+|.+++
T Consensus 262 ~~d~~~~ 268 (365)
T cd03318 262 AADVFSL 268 (365)
T ss_pred CCCeEEE
Confidence 5788855
No 377
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=92.90 E-value=1.1 Score=40.81 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=56.9
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017148 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
++..=+|. .+.++..+.+ +.+-+.|+..|.|.-++. ...+.+..++++++.--+||.|.
T Consensus 11 ~~~~v~r~-----~~~~~~~~~~-~a~~~gGi~~iEvt~~~~---------------~~~~~i~~l~~~~~~~~~iGaGT 69 (206)
T PRK09140 11 PLIAILRG-----ITPDEALAHV-GALIEAGFRAIEIPLNSP---------------DPFDSIAALVKALGDRALIGAGT 69 (206)
T ss_pred CEEEEEeC-----CCHHHHHHHH-HHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHcCCCcEEeEEe
Confidence 44444664 2334444433 334479999999875542 11557788887775434799999
Q ss_pred CCCHHHHHHHHHcCcCeeEEch
Q 017148 216 INTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 216 I~s~~da~~~l~~Gad~VmiGR 237 (376)
|.+.+++..+++.|||+++.+-
T Consensus 70 V~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 70 VLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred cCCHHHHHHHHHcCCCEEECCC
Confidence 9999999999999999999853
No 378
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=92.86 E-value=3.2 Score=40.65 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCcc
Q 017148 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDS 150 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~ 150 (376)
..+++.+.+.++.+.+.||..+-+..|... . .+ . .+++.-.+.++++|+.++ +.+.+-.--+|+
T Consensus 118 ~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~-~---~~--~----~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~---- 183 (341)
T cd03327 118 PTDLDELPDEAKEYLKEGYRGMKMRFGYGP-S---DG--H----AGLRKNVELVRAIREAVGYDVDLMLDCYMSWN---- 183 (341)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCC-C---cc--h----HHHHHHHHHHHHHHHHhCCCCcEEEECCCCCC----
Confidence 357888888888777889999998765310 0 00 0 235667788888888764 344443333343
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cC
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG 229 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G 229 (376)
.++.+++ .+.+++.++.+|. ..+++-+++..+++.+. .++||.+.=.+.+..++.++++ ..
T Consensus 184 ~~~A~~~-~~~l~~~~~~~iE----------------eP~~~~d~~~~~~l~~~-~~~pIa~gE~~~~~~~~~~~i~~~a 245 (341)
T cd03327 184 LNYAIKM-ARALEKYELRWIE----------------EPLIPDDIEGYAELKKA-TGIPISTGEHEYTVYGFKRLLEGRA 245 (341)
T ss_pred HHHHHHH-HHHhhhcCCcccc----------------CCCCccCHHHHHHHHhc-CCCCeEeccCccCHHHHHHHHHcCC
Confidence 3444443 3444566665543 11223346666677665 4899888777899999999998 56
Q ss_pred cCeeEE
Q 017148 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
+|.|++
T Consensus 246 ~d~i~~ 251 (341)
T cd03327 246 VDILQP 251 (341)
T ss_pred CCEEec
Confidence 888775
No 379
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.86 E-value=1.5 Score=40.36 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH----hhCCCCeEEEecCCCCHHHHHHHHH
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL----RDFPDLTFTLNGGINTVDEVNAALR 227 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~----~~~~~ipVi~nGgI~s~~da~~~l~ 227 (376)
++..+. ++.+.+.|+..|.|.-++.. ..+.+.+++ ++++++ ++|.|-|.|.++++++++
T Consensus 27 ~~a~~~-~~al~~gGi~~iEiT~~tp~---------------a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~~ 89 (222)
T PRK07114 27 EVAKKV-IKACYDGGARVFEFTNRGDF---------------AHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYIQ 89 (222)
T ss_pred HHHHHH-HHHHHHCCCCEEEEeCCCCc---------------HHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHHH
Confidence 344433 34455799999999877631 144555554 334443 799999999999999999
Q ss_pred cCcCeeEE
Q 017148 228 KGAHHVMV 235 (376)
Q Consensus 228 ~Gad~Vmi 235 (376)
.||++++-
T Consensus 90 aGA~FiVs 97 (222)
T PRK07114 90 LGANFIVT 97 (222)
T ss_pred cCCCEEEC
Confidence 99998774
No 380
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=92.82 E-value=1.5 Score=43.09 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=35.4
Q ss_pred ccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 193 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 193 ~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
..|+.+..+++.. ++|||.- +|.+.+|+..+.+.|||+|.+.
T Consensus 200 ~~~~~i~~l~~~~-~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 200 LTWDDIKWLRKHT-KLPIVLK-GVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred CCHHHHHHHHHhc-CCcEEEE-cCCCHHHHHHHHHcCCCEEEEE
Confidence 4588888887765 8998877 7789999999999999998874
No 381
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.78 E-value=3.3 Score=37.71 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=77.6
Q ss_pred EEEEecCC----CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 67 IVLQIGGS----NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 67 ~~vQL~g~----~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
+.+|..-. ++++..+.|+.+.++|..+++++ + .+.++++++.+++|+...++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~--------------~----------~~~i~~i~~~~~~Pil~~~~ 64 (221)
T PRK01130 9 VSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN--------------G----------VEDIKAIRAVVDVPIIGIIK 64 (221)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC--------------C----------HHHHHHHHHhCCCCEEEEEe
Confidence 45565532 45778888888889998888762 0 35677778778899864444
Q ss_pred CCC-C-CC---ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCC
Q 017148 143 IGV-D-DH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 217 (376)
Q Consensus 143 ~g~-~-~~---~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~ 217 (376)
-.+ + .. ...++ +. .+.++|+|+|.+-..... .+.. ....+.+..+.+. +++|++. ++.
T Consensus 65 ~d~~~~~~~~~~~~~~----v~-~a~~aGad~I~~d~~~~~----~p~~-----~~~~~~i~~~~~~-~~i~vi~--~v~ 127 (221)
T PRK01130 65 RDYPDSEVYITPTLKE----VD-ALAAAGADIIALDATLRP----RPDG-----ETLAELVKRIKEY-PGQLLMA--DCS 127 (221)
T ss_pred cCCCCCCceECCCHHH----HH-HHHHcCCCEEEEeCCCCC----CCCC-----CCHHHHHHHHHhC-CCCeEEE--eCC
Confidence 110 0 00 11222 22 234699998887543210 0000 0113444444443 4788774 678
Q ss_pred CHHHHHHHHHcCcCeeEEc
Q 017148 218 TVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 218 s~~da~~~l~~Gad~VmiG 236 (376)
+.+++..+.+.|+|.+.++
T Consensus 128 t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 128 TLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred CHHHHHHHHHcCCCEEEcC
Confidence 9999988888999999774
No 382
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=92.62 E-value=12 Score=39.62 Aligned_cols=241 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred EecCCCH---HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017148 70 QIGGSNL---DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 70 QL~g~~~---~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
++.|... +-.....+.+.+.|.|.|-|- .-+|+.+.+...++.+++ .+..+.+-+.....
T Consensus 87 n~vg~~~ypddvv~~~v~~a~~~Gid~~rif----------------d~lnd~~~~~~ai~~ak~-~G~~~~~~i~yt~~ 149 (593)
T PRK14040 87 NLLGYRHYADDVVERFVERAVKNGMDVFRVF----------------DAMNDPRNLETALKAVRK-VGAHAQGTLSYTTS 149 (593)
T ss_pred ceeccccCcHHHHHHHHHHHHhcCCCEEEEe----------------eeCCcHHHHHHHHHHHHH-cCCeEEEEEEEeeC
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017148 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
...+.+.+.+ +++.++++|+|.|.+---..... |....+.+..+++.+ ++||-.-+-=...-.....+
T Consensus 150 p~~~~~~~~~-~a~~l~~~Gad~i~i~Dt~G~l~----------P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~l 217 (593)
T PRK14040 150 PVHTLQTWVD-LAKQLEDMGVDSLCIKDMAGLLK----------PYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLL 217 (593)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEECCCCCCcC----------HHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHH
Q ss_pred H---cCcCeeE-----EchHHhhCCchhhHhhhhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 017148 227 R---KGAHHVM-----VGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLH 298 (376)
Q Consensus 227 ~---~Gad~Vm-----iGRa~l~~P~lf~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 298 (376)
+ .|||.|- +|.+. +||.+ +.+-..+.+......--.+.+....+|...+...|..-.+... --.---
T Consensus 218 aAieAGa~~vD~ai~glG~~~-Gn~~l--e~vv~~L~~~~~~~gidl~~l~~is~~~~~v~~~Y~~~~~~~~--~~~~~v 292 (593)
T PRK14040 218 KAIEAGIDGVDTAISSMSMTY-GHSAT--ETLVATLEGTERDTGLDILKLEEIAAYFREVRKKYAKFEGQLK--GVDSRI 292 (593)
T ss_pred HHHHcCCCEEEeccccccccc-cchhH--HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHHhccCCcccc--cCcccE
Q ss_pred hhcCCCCC--hHHHHHHHHHHhhhhhHHHHHHHHHHhCCCCCCCCCCcCC
Q 017148 299 FFHSEPGN--GLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEA 346 (376)
Q Consensus 299 y~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (376)
|.+.+||. +.+..++ +.+.-...+.+++++ +.......=|+|...|
T Consensus 293 ~~~e~PGG~~Snl~~ql-~~~g~~~~~~evl~e-~~~v~~~lG~~~~VTP 340 (593)
T PRK14040 293 LVAQVPGGMLTNMESQL-KEQGAADKLDEVLAE-IPRVREDLGFIPLVTP 340 (593)
T ss_pred EEEcCCCchHHHHHHHH-HHCCCHHHHHHHHHH-HHHHHHHcCCCCeECC
No 383
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.61 E-value=1.4 Score=42.14 Aligned_cols=63 Identities=8% Similarity=0.007 Sum_probs=45.4
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+. +.+++.++.. .++.+.++||| +.+.+.+..++|+|.+.+|.-...-
T Consensus 215 ~agaDiImLDnmsp------------------e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~galthsa 275 (290)
T PRK06559 215 AAGADIIMLDNMSL------------------EQIEQAITLIAGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTHSA 275 (290)
T ss_pred HcCCCEEEECCCCH------------------HHHHHHHHHhcCceEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 58999998776442 2233332221 26789999999 8999999999999999999865545
Q ss_pred Cch
Q 017148 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
|++
T Consensus 276 ~~~ 278 (290)
T PRK06559 276 KSL 278 (290)
T ss_pred ccc
Confidence 554
No 384
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=92.54 E-value=0.6 Score=44.03 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=55.4
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++..+++|+++|.|..-....+| .++.+..+++. +++||+.--=|.++-++.++.+.|||+|.+.=.
T Consensus 76 A~~~~~~GA~aisvlte~~~f~g------------~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~ 142 (260)
T PRK00278 76 AKAYEAGGAACLSVLTDERFFQG------------SLEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIVA 142 (260)
T ss_pred HHHHHhCCCeEEEEecccccCCC------------CHHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEec
Confidence 45567899999988765433333 16777777765 599999988899999999999999999998777
Q ss_pred HhhCCc
Q 017148 239 AYQNPW 244 (376)
Q Consensus 239 ~l~~P~ 244 (376)
++.+..
T Consensus 143 ~l~~~~ 148 (260)
T PRK00278 143 ALDDEQ 148 (260)
T ss_pred cCCHHH
Confidence 664333
No 385
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=92.51 E-value=3.9 Score=37.30 Aligned_cols=142 Identities=17% Similarity=0.171 Sum_probs=83.3
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEe
Q 017148 64 QHPIVLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~g~~-~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKi 141 (376)
..++++-+--.| +.....+++.+.+.|+|.+.+|... | .+-+...++..++.- ++=+.+.+
T Consensus 49 ~~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~-----------G------~~~l~~~~~~~~~~~~~~~~v~~l 111 (216)
T cd04725 49 GFLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYG-----------G------SDMLKAALEAAEEKGKGLFAVTVL 111 (216)
T ss_pred CCcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcC-----------C------HHHHHHHHHHHhccCCeEEEEEcC
Confidence 367777775444 4556666677778899999998421 2 234455555544321 22223333
Q ss_pred cCCCCCC-------ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017148 142 RIGVDDH-------DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 142 R~g~~~~-------~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
+ +++.. ...++....+++..++.|++.+.+++... +.+.+. ..++.+ +...
T Consensus 112 s-s~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~------------------~~i~~~--~~~~~~-~ltP 169 (216)
T cd04725 112 S-SPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATEP------------------EALRRA--LGPDFL-ILTP 169 (216)
T ss_pred C-CCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcch------------------HHHHHh--hCCCCe-EEcC
Confidence 3 22221 02344454556677788988887766431 112111 123444 7778
Q ss_pred CCCCH---------HHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 215 GINTV---------DEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 215 gI~s~---------~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
||.-. .+..+++..|++++.+||+++..+.
T Consensus 170 GI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~ 208 (216)
T cd04725 170 GIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAAD 208 (216)
T ss_pred CcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCC
Confidence 88632 2566777889999999999998766
No 386
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=92.47 E-value=1.9 Score=39.37 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=78.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
+.++.+|+.+.+.+.+.+.|+.+.+. |--.|+| |.. .. | .+.++.+++. ++++.+-.
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T-----~~-g----------l~ai~~L~~~-gi~v~~T~- 108 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVT-----ED-G----------LKAIKKLSEE-GIKTNVTA- 108 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCc-----Hh-H----------HHHHHHHHHc-CCceeeEE-
Confidence 56899999999999999999988776 4333433 321 12 3 2334444332 44444321
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHH---HHHhhCCCCe-EEEecCCCC
Q 017148 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY---ALLRDFPDLT-FTLNGGINT 218 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~---~~~~~~~~ip-Vi~nGgI~s 218 (376)
.-+.++.. ++.++|+++|...-+.-...|..+ ...+. ++.+.. +++ =|...++++
T Consensus 109 -----V~s~~Qa~-----~Aa~AGA~yvsP~vgR~~~~g~dg----------~~~i~~i~~~~~~~-~~~tkil~As~r~ 167 (211)
T cd00956 109 -----IFSAAQAL-----LAAKAGATYVSPFVGRIDDLGGDG----------MELIREIRTIFDNY-GFDTKILAASIRN 167 (211)
T ss_pred -----ecCHHHHH-----HHHHcCCCEEEEecChHhhcCCCH----------HHHHHHHHHHHHHc-CCCceEEecccCC
Confidence 12233322 223689999877633211112111 33333 344443 333 467788999
Q ss_pred HHHHHHHHHcCcCeeEEchH
Q 017148 219 VDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa 238 (376)
++++.++...|||.|-+.=.
T Consensus 168 ~~ei~~a~~~Gad~vTv~~~ 187 (211)
T cd00956 168 PQHVIEAALAGADAITLPPD 187 (211)
T ss_pred HHHHHHHHHcCCCEEEeCHH
Confidence 99999999999999998543
No 387
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=92.43 E-value=1.3 Score=40.29 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
.++.... ++.+-+.|++.|.|.-|+.. ..+.++.+++++++ -+|+.|-|-|++++.++.+.||
T Consensus 24 ~e~a~~~-a~Ali~gGi~~IEITl~sp~---------------a~e~I~~l~~~~p~-~lIGAGTVL~~~q~~~a~~aGa 86 (211)
T COG0800 24 VEEALPL-AKALIEGGIPAIEITLRTPA---------------ALEAIRALAKEFPE-ALIGAGTVLNPEQARQAIAAGA 86 (211)
T ss_pred HHHHHHH-HHHHHHcCCCeEEEecCCCC---------------HHHHHHHHHHhCcc-cEEccccccCHHHHHHHHHcCC
Confidence 3444443 44455799999999877631 26788899888874 4899999999999999999999
Q ss_pred CeeE
Q 017148 231 HHVM 234 (376)
Q Consensus 231 d~Vm 234 (376)
+++.
T Consensus 87 ~fiV 90 (211)
T COG0800 87 QFIV 90 (211)
T ss_pred CEEE
Confidence 9764
No 388
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.42 E-value=0.33 Score=50.13 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=46.7
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
.+.++|+|.|.|. .+ .|.+. ...+.++.+++.++.--.|+.|.|.|+++++.+++.|||+|.+|.|
T Consensus 249 ~Lv~aGvd~i~vd-~a---~g~~~--------~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g 314 (502)
T PRK07107 249 ALVEAGADVLCID-SS---EGYSE--------WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIG 314 (502)
T ss_pred HHHHhCCCeEeec-Cc---ccccH--------HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCC
Confidence 3456999999886 21 12110 1146677777777532357889999999999999999999988543
No 389
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.40 E-value=1.8 Score=42.02 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHhcc-cCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHH
Q 017148 118 DPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE 196 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~-~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~ 196 (376)
.++.+.+.++.+++. ++.|+.|-+-. +......++.++. +.+.++..+..+++.. ..
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~-~~~~~~~~~~l~v----i~e~~v~~V~~~~G~P-----------------~~ 95 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILG-FVDTELRAAQLAV----VRAIKPTFALIAGGRP-----------------DQ 95 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEec-cCCCcchHHHHHH----HHhcCCcEEEEcCCCh-----------------HH
Confidence 588999999999985 68999998743 3222223343332 2357899998886432 11
Q ss_pred HHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017148 197 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+.++ ++. ++.|+ .-+.|...+.++.+.|||+|.+
T Consensus 96 -~~~l-k~~-Gi~v~--~~v~s~~~A~~a~~~GaD~vVa 129 (320)
T cd04743 96 -ARAL-EAI-GISTY--LHVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred -HHHH-HHC-CCEEE--EEeCCHHHHHHHHHcCCCEEEE
Confidence 2333 333 77777 6678999999999999998873
No 390
>PRK06256 biotin synthase; Validated
Probab=92.39 E-value=2.3 Score=41.48 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=75.6
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+.++.++++|++.+.+|.-. ++.+.++-+-+ ...+...+.++.+++ .++++.+-+-+|.. ++.++..+.+.
T Consensus 153 e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~----~t~~~~i~~i~~a~~-~Gi~v~~~~I~Glg--Et~ed~~~~~~- 223 (336)
T PRK06256 153 EQAERLKEAGVDRYNHNLET-SRSYFPNVVTT----HTYEDRIDTCEMVKA-AGIEPCSGGIIGMG--ESLEDRVEHAF- 223 (336)
T ss_pred HHHHHHHHhCCCEEecCCcc-CHHHHhhcCCC----CCHHHHHHHHHHHHH-cCCeeccCeEEeCC--CCHHHHHHHHH-
Confidence 34567888899998887766 44322111101 245566666666655 36666555555553 34445444433
Q ss_pred HhhcCCccEEEEccCccccCCCCCCCCCCCCccc-HHHHHHHHhhCCCCeEEEecCC-CCHHHH-HHHHHcCcCeeEEch
Q 017148 161 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGI-NTVDEV-NAALRKGAHHVMVGR 237 (376)
Q Consensus 161 ~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~~~~~~~~~ipVi~nGgI-~s~~da-~~~l~~Gad~VmiGR 237 (376)
.+.+.+++.+.++.-.+. .|..-.......+.. ...++-.+--.|+..|...||= ....+. ..++ .||+++|+|=
T Consensus 224 ~l~~l~~~~v~i~~l~P~-pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~ 301 (336)
T PRK06256 224 FLKELDADSIPINFLNPI-PGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGL-GGANSVIVGN 301 (336)
T ss_pred HHHhCCCCEEeecccccC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHh-ccCceeeECC
Confidence 344688998888743321 121100111111111 1122222233577778666663 333333 3344 6999999985
Q ss_pred H
Q 017148 238 A 238 (376)
Q Consensus 238 a 238 (376)
=
T Consensus 302 ~ 302 (336)
T PRK06256 302 Y 302 (336)
T ss_pred c
Confidence 4
No 391
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=92.15 E-value=7.7 Score=37.90 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEe-----------cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC
Q 017148 75 NLDNLAKATELANAYNYDEINL-----------NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI 143 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~Iei-----------N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~ 143 (376)
..+.+....+.+++.|.+.+-- .+|+|.-|+ ||.-+++..++..+-+ +++||.+|.-.
T Consensus 74 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI------aS~~~~n~pLL~~~A~-----~gkPvilStGm 142 (329)
T TIGR03569 74 SEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKI------PSGEITNAPLLKKIAR-----FGKPVILSTGM 142 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEE------CcccccCHHHHHHHHh-----cCCcEEEECCC
Confidence 3566777777777878666533 345665553 5555677777666543 48899998665
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCcc---EEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017148 144 GVDDHDSYNQLCDFIYKVSSLSPTR---HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd---~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
. +++|+...+. .+.+.|.. .+.+|+-+. +..+ ...+++..+..+++.+ ++||..++--....
T Consensus 143 a-----tl~Ei~~Av~-~i~~~G~~~~~i~llhC~s~---YP~~-----~~~~nL~~I~~Lk~~f-~~pVG~SdHt~G~~ 207 (329)
T TIGR03569 143 A-----TLEEIEAAVG-VLRDAGTPDSNITLLHCTTE---YPAP-----FEDVNLNAMDTLKEAF-DLPVGYSDHTLGIE 207 (329)
T ss_pred C-----CHHHHHHHHH-HHHHcCCCcCcEEEEEECCC---CCCC-----cccCCHHHHHHHHHHh-CCCEEECCCCccHH
Confidence 2 3344433333 33467874 677787542 1111 1234577787777777 79999876555555
Q ss_pred HHHHHHHcCcC
Q 017148 221 EVNAALRKGAH 231 (376)
Q Consensus 221 da~~~l~~Gad 231 (376)
-...+...||+
T Consensus 208 ~~~aAvalGA~ 218 (329)
T TIGR03569 208 APIAAVALGAT 218 (329)
T ss_pred HHHHHHHcCCC
Confidence 55566667888
No 392
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.02 E-value=1.8 Score=41.21 Aligned_cols=63 Identities=10% Similarity=0.079 Sum_probs=45.0
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+. +.+++.++.. ....+.++||| +.+.+.+..++|+|.+.+|.--..-
T Consensus 211 ~~gaDiImLDn~s~------------------e~l~~av~~~~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~galths~ 271 (281)
T PRK06543 211 AAGVDTIMLDNFSL------------------DDLREGVELVDGRAIVEASGNV-NLNTVGAIASTGVDVISVGALTHSV 271 (281)
T ss_pred hcCCCEEEECCCCH------------------HHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 58999998775432 2222322211 14578999999 8999999999999999999866555
Q ss_pred Cch
Q 017148 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
||+
T Consensus 272 ~~~ 274 (281)
T PRK06543 272 RAL 274 (281)
T ss_pred ccc
Confidence 664
No 393
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.01 E-value=4.2 Score=38.77 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHC-CCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017148 75 NLDNLAKATELANAY-NYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~-G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
|.+.+.+-++.+.+. |+++|=++.. +|+ +.+| ..+.-.++++.+.+.+ .+||.+-+ .. .++
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~Gs--------tGE-~~~L--t~~Er~~~~~~~~~~~~~~~~viagv----~~-~~~ 82 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGS--------TGE-GFLL--SVEERKQIAEIVAEAAKGKVTLIAHV----GS-LNL 82 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcC--------CcC-cccC--CHHHHHHHHHHHHHHhCCCCeEEecc----CC-CCH
Confidence 678888899999888 9999988642 344 2222 2344444455444433 35777633 22 234
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHH
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAA 225 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~ 225 (376)
++.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.+..+++||+. .|--.+++.+.++
T Consensus 83 ~~ai~~-a~~a~~~Gad~v~~~~P~--y~~~~-------~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L 152 (288)
T cd00954 83 KESQEL-AKHAEELGYDAISAITPF--YYKFS-------FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLEL 152 (288)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeCCC--CCCCC-------HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHH
Confidence 555553 456678999999876421 11110 0111556667776654788863 3545577777766
Q ss_pred HH
Q 017148 226 LR 227 (376)
Q Consensus 226 l~ 227 (376)
.+
T Consensus 153 ~~ 154 (288)
T cd00954 153 FE 154 (288)
T ss_pred hc
Confidence 64
No 394
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.01 E-value=1.8 Score=41.52 Aligned_cols=63 Identities=13% Similarity=0.195 Sum_probs=46.9
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+. +.+++.++.. .++.+-++||| |.+.+.+..++|+|.+.+|.-...-
T Consensus 223 ~aGaDiImLDnmsp------------------e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~IS~galthsa 283 (294)
T PRK06978 223 AHGAQSVLLDNFTL------------------DMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAETGVDRISIGALTKDV 283 (294)
T ss_pred HcCCCEEEECCCCH------------------HHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 59999998876542 2233333222 26789999999 7999999989999999999877666
Q ss_pred Cch
Q 017148 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
||+
T Consensus 284 ~~l 286 (294)
T PRK06978 284 RAT 286 (294)
T ss_pred ccc
Confidence 775
No 395
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=92.01 E-value=0.43 Score=44.82 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=50.7
Q ss_pred HHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchH
Q 017148 159 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA 238 (376)
Q Consensus 159 ~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa 238 (376)
++.++++|+++|.|-.-....+| .++.+..+++.+ ++||...-=|.++-++.++...|||+|.+=-+
T Consensus 74 a~~y~~~GA~aiSVlTe~~~F~G------------s~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~ 140 (254)
T PF00218_consen 74 AKAYEEAGAAAISVLTEPKFFGG------------SLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIAA 140 (254)
T ss_dssp HHHHHHTT-SEEEEE--SCCCHH------------HHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEEEEEGG
T ss_pred HHHHHhcCCCEEEEECCCCCCCC------------CHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEeehhHH
Confidence 45667899999999865544333 277788887765 89999999999999999999999999988666
Q ss_pred HhhCCc
Q 017148 239 AYQNPW 244 (376)
Q Consensus 239 ~l~~P~ 244 (376)
+|.+-.
T Consensus 141 ~L~~~~ 146 (254)
T PF00218_consen 141 ILSDDQ 146 (254)
T ss_dssp GSGHHH
T ss_pred hCCHHH
Confidence 665543
No 396
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=92.00 E-value=1.6 Score=41.97 Aligned_cols=63 Identities=10% Similarity=0.151 Sum_probs=45.5
Q ss_pred cCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhC
Q 017148 164 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN 242 (376)
Q Consensus 164 ~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~ 242 (376)
++|+|.|-+...+. +.++++++.. .++.+.++||| +.+.+.+.-++|+|.+.+|.-.-.-
T Consensus 226 ~~gaDiI~LDn~s~------------------e~~~~av~~~~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galthsa 286 (296)
T PRK09016 226 KAGADIIMLDNFTT------------------EQMREAVKRTNGRALLEVSGNV-TLETLREFAETGVDFISVGALTKHV 286 (296)
T ss_pred HcCCCEEEeCCCCh------------------HHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 58999988765432 2233333221 26889999999 8899999989999999999865555
Q ss_pred Cch
Q 017148 243 PWY 245 (376)
Q Consensus 243 P~l 245 (376)
||+
T Consensus 287 ~~l 289 (296)
T PRK09016 287 QAL 289 (296)
T ss_pred Ccc
Confidence 664
No 397
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=91.97 E-value=1.7 Score=42.43 Aligned_cols=117 Identities=11% Similarity=0.045 Sum_probs=65.6
Q ss_pred ccccCCHHHHHHHHHHHhc-ccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCC
Q 017148 113 VSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191 (376)
Q Consensus 113 ~~l~~~~~~~~eiv~~v~~-~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~ 191 (376)
+..+.+++...+. +.+|+ ..+.|+.+-+-..-......++..+ ..+..++|++.+|-....... .+...+..
T Consensus 92 ~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~----~i~~i~adal~i~ln~~q~~~-~p~g~~~f- 164 (333)
T TIGR02151 92 RAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQE----AIDMIEADALAIHLNVLQELV-QPEGDRNF- 164 (333)
T ss_pred hhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHH----HHHHhcCCCEEEcCccccccc-CCCCCcCH-
Confidence 3344578766555 77777 5688988754321110011223322 233456788888853211000 00000010
Q ss_pred cccHHHHHHHHhhCCCCeEEE--ecCCCCHHHHHHHHHcCcCeeEEch
Q 017148 192 PLKYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~--nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
....+.+..+++.. ++||+. +|.-.+.+++..+.+.|+|+|-++-
T Consensus 165 ~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 165 KGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 00125677777765 899986 5666789999888889999998863
No 398
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=91.97 E-value=3.5 Score=38.54 Aligned_cols=153 Identities=11% Similarity=0.110 Sum_probs=79.8
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-----CccHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HDSYNQLCD 156 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-----~~~~~~~~~ 156 (376)
.+..+++.|.+++-||=+ -|+..|+ ..-+++..-+++..+.==.||.+ .|-.. ..+.+-+.+
T Consensus 80 S~~mL~d~G~~~viiGHS------ERR~~~~----E~d~~i~~K~~aa~~~Gl~pIlC---vGEtl~~reag~t~~v~~~ 146 (251)
T COG0149 80 SAEMLKDLGAKYVLIGHS------ERRLYFG----ETDELIAKKVKAAKEAGLTPILC---VGETLEEREAGKTLEVLKR 146 (251)
T ss_pred CHHHHHHcCCCEEEECcc------ccccccc----cchHHHHHHHHHHHHCCCeEEEE---cCCCHHHHhccChHHHHHH
Confidence 456788999999999731 1222233 33345556666655542245544 22111 112222333
Q ss_pred HHHHHhhcCCc---cEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHHcC
Q 017148 157 FIYKVSSLSPT---RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 157 ~i~~~~e~~Gv---d~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~~G 229 (376)
.+...+...+. ..|..-+--..=.|.+.. ...+...-..++...... .++||+.-|+|....+.+.+.+.+
T Consensus 147 Ql~~~l~~l~~~~~~vIAYEPvWAIGTG~~at--~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~ 224 (251)
T COG0149 147 QLAAALAALSPEANIVIAYEPVWAIGTGKSAS--PADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPD 224 (251)
T ss_pred HHHHHHhhcCcccCeEEEECCHHHhcCCCCCC--HHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCC
Confidence 34444444443 333333211110121110 000000112333433332 489999999998888888777799
Q ss_pred cCeeEEchHHhhCCchhhHhh
Q 017148 230 AHHVMVGRAAYQNPWYTLGHV 250 (376)
Q Consensus 230 ad~VmiGRa~l~~P~lf~~~~ 250 (376)
+||+.||++.|.-.. |...+
T Consensus 225 idG~LVGgAslka~~-f~~ii 244 (251)
T COG0149 225 IDGALVGGASLKADD-FLAIL 244 (251)
T ss_pred CCeEEEcceeecchh-HHHHH
Confidence 999999999997666 34433
No 399
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=91.94 E-value=7.1 Score=39.20 Aligned_cols=142 Identities=11% Similarity=0.156 Sum_probs=85.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcc---ccCCC---Ccccc----------c--cCCHHHHHHHHHHHhccc
Q 017148 72 GGSNLDNLAKATELANAYNYDEINLNCGCPSPK---VAGHG---CFGVS----------L--MLDPKFVGEAMSVIAANT 133 (376)
Q Consensus 72 ~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~---v~r~g---~yG~~----------l--~~~~~~~~eiv~~v~~~~ 133 (376)
.+.+++++.+-++.+.+.||..+-+..|-|... ....+ .++-. + ....+...+.|++||+.+
T Consensus 124 ~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~ 203 (404)
T PRK15072 124 NGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF 203 (404)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh
Confidence 455777776667667778999999987743210 00000 00000 0 012245568899999887
Q ss_pred C--ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE
Q 017148 134 N--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT 211 (376)
Q Consensus 134 ~--~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi 211 (376)
+ +.+.+-.--+|+ .++..++ .+.+++.++.+|. . .+++-+++..+++++. .++||.
T Consensus 204 G~~~~l~vDaN~~w~----~~~A~~~-~~~l~~~~l~~iE----e------------P~~~~d~~~~~~L~~~-~~iPIa 261 (404)
T PRK15072 204 GFDLHLLHDVHHRLT----PIEAARL-GKSLEPYRLFWLE----D------------PTPAENQEAFRLIRQH-TTTPLA 261 (404)
T ss_pred CCCceEEEECCCCCC----HHHHHHH-HHhccccCCcEEE----C------------CCCccCHHHHHHHHhc-CCCCEE
Confidence 4 344444333343 4455554 3445667777665 1 1122235666777665 489998
Q ss_pred EecCCCCHHHHHHHHH-cCcCeeEE
Q 017148 212 LNGGINTVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 212 ~nGgI~s~~da~~~l~-~Gad~Vmi 235 (376)
+.=.+.+..++.++++ ..+|.|++
T Consensus 262 ~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 262 VGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred eCcCccCHHHHHHHHHcCCCCEEec
Confidence 8778899999999999 45788876
No 400
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.89 E-value=2.3 Score=41.42 Aligned_cols=114 Identities=12% Similarity=0.085 Sum_probs=64.7
Q ss_pred ccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcc
Q 017148 115 LMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL 193 (376)
Q Consensus 115 l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~ 193 (376)
.+.+++.. +-++.+|+... .|+.+-+-..-....+.++..+ ..+..++|++.+|-........ +...+. ...
T Consensus 93 ~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~----~i~~~~adalel~l~~~q~~~~-~~~~~d-f~~ 165 (326)
T cd02811 93 ALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR----AVEMIEADALAIHLNPLQEAVQ-PEGDRD-FRG 165 (326)
T ss_pred hccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHH----HHHhcCCCcEEEeCcchHhhcC-CCCCcC-HHH
Confidence 34567755 66777777664 7877744331110113334333 3345678899998532100000 000000 000
Q ss_pred cHHHHHHHHhhCCCCeEEE--ecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 194 KYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 194 ~~~~v~~~~~~~~~ipVi~--nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
..+.+..+++.+ ++||+. +|.-.+.+++..+.+.|+|+|-++
T Consensus 166 ~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 166 WLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVA 209 (326)
T ss_pred HHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 124566777654 899987 566688999988888999999984
No 401
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=91.87 E-value=3.5 Score=39.07 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.++|=++.. +|+ + ..-..+.-.++++.+++.+ .+||.+-+. . .+.+
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~Gs--------tGE-~--~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~----~-~~~~ 82 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGT--------TGE-S--PTLSDEEHEAVIEAVVEAVNGRVPVIAGTG----S-NNTA 82 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC--------Ccc-h--hhCCHHHHHHHHHHHHHHhCCCCcEEeccC----C-ccHH
Confidence 6788889999999999999988742 222 2 2233444455555555544 357666333 2 2345
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.+. .++||+. .|-..+++.+.++.
T Consensus 83 ~~~~~-a~~a~~~G~d~v~~~~P~--~~~~~-------~~~l~~~~~~ia~~-~~~pi~lYn~P~~~g~~ls~~~~~~L~ 151 (284)
T cd00950 83 EAIEL-TKRAEKAGADAALVVTPY--YNKPS-------QEGLYAHFKAIAEA-TDLPVILYNVPGRTGVNIEPETVLRLA 151 (284)
T ss_pred HHHHH-HHHHHHcCCCEEEEcccc--cCCCC-------HHHHHHHHHHHHhc-CCCCEEEEEChhHhCCCCCHHHHHHHh
Confidence 55554 455678999999887432 11100 01124566777765 4788863 36567788777776
Q ss_pred H
Q 017148 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 152 ~ 152 (284)
T cd00950 152 E 152 (284)
T ss_pred c
Confidence 5
No 402
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=91.86 E-value=4.5 Score=38.68 Aligned_cols=127 Identities=10% Similarity=0.087 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccH
Q 017148 75 NLDNLAKATELANAYN-YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G-~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~ 151 (376)
|.+.+.+-.+.+.+.| +|+|=++.. +|+ +.+| ..+.-.++++.+++.+ .+||.+-+. . .++
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~Gs--------tGE-~~~L--t~eEr~~~~~~~~~~~~~~~pvi~gv~----~-~~t 82 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGS--------TGE-NFML--STEEKKEIFRIAKDEAKDQIALIAQVG----S-VNL 82 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCc--------ccc-cccC--CHHHHHHHHHHHHHHhCCCCcEEEecC----C-CCH
Confidence 6788888889889999 999988642 333 3222 4445555565555544 367776433 2 234
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE-E-----ecCCCCHHHHHHH
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAA 225 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi-~-----nGgI~s~~da~~~ 225 (376)
++.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.++.+++||+ . .|--.+++.+.++
T Consensus 83 ~~~i~l-a~~a~~~Gad~v~v~~P~--y~~~~-------~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L 152 (290)
T TIGR00683 83 KEAVEL-GKYATELGYDCLSAVTPF--YYKFS-------FPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGEL 152 (290)
T ss_pred HHHHHH-HHHHHHhCCCEEEEeCCc--CCCCC-------HHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHH
Confidence 455553 455678999999985421 11100 011144555665544457765 2 2555566666655
Q ss_pred HH
Q 017148 226 LR 227 (376)
Q Consensus 226 l~ 227 (376)
.+
T Consensus 153 ~~ 154 (290)
T TIGR00683 153 YK 154 (290)
T ss_pred hc
Confidence 54
No 403
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.83 E-value=5.5 Score=35.69 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=70.8
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccE--EEEecCCC
Q 017148 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPV--SVKCRIGV 145 (376)
Q Consensus 69 vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv--~vKiR~g~ 145 (376)
+-|=..++++..+.++.+ +.|++.||+. .|.. . .+| .++++.+++.. +..+ .+|+.
T Consensus 4 ~alD~~~~~~a~~~~~~l-~~~v~~iev~--~~l~--~---~~g----------~~~i~~l~~~~~~~~i~~d~k~~--- 62 (206)
T TIGR03128 4 LALDLLDIEEALELAEKV-ADYVDIIEIG--TPLI--K---NEG----------IEAVKEMKEAFPDRKVLADLKTM--- 62 (206)
T ss_pred EEecCCCHHHHHHHHHHc-ccCeeEEEeC--CHHH--H---HhC----------HHHHHHHHHHCCCCEEEEEEeec---
Confidence 334456788888888888 6789999994 2221 1 123 34555665542 3333 34433
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe-cCCCC-HHHHH
Q 017148 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINT-VDEVN 223 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n-GgI~s-~~da~ 223 (376)
+..++ + + . .+.++|+|+|++|+-... .....+.+.+++. +++++.. =+..+ .+++.
T Consensus 63 -d~~~~-~-~---~-~~~~~Gad~i~vh~~~~~--------------~~~~~~i~~~~~~-g~~~~~~~~~~~t~~~~~~ 120 (206)
T TIGR03128 63 -DAGEY-E-A---E-QAFAAGADIVTVLGVADD--------------ATIKGAVKAAKKH-GKEVQVDLINVKDKVKRAK 120 (206)
T ss_pred -cchHH-H-H---H-HHHHcCCCEEEEeccCCH--------------HHHHHHHHHHHHc-CCEEEEEecCCCChHHHHH
Confidence 21211 1 1 1 233699999999975310 0112222333444 7888764 24444 47777
Q ss_pred HHHHcCcCeeEEch
Q 017148 224 AALRKGAHHVMVGR 237 (376)
Q Consensus 224 ~~l~~Gad~VmiGR 237 (376)
.+.+.|+|.|.+..
T Consensus 121 ~~~~~g~d~v~~~p 134 (206)
T TIGR03128 121 ELKELGADYIGVHT 134 (206)
T ss_pred HHHHcCCCEEEEcC
Confidence 78778999998844
No 404
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.82 E-value=5.5 Score=37.36 Aligned_cols=129 Identities=10% Similarity=0.139 Sum_probs=76.3
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--cEEEEecC
Q 017148 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRI 143 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--pv~vKiR~ 143 (376)
|+..-+.+.++ +..+.++...+.||..+-+..| . .+++.-.+.++++++.++- .+.+-.--
T Consensus 74 ~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg-------------~---~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 136 (263)
T cd03320 74 PVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVG-------------A---TSFEEDLARLRALREALPADAKLRLDANG 136 (263)
T ss_pred ceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEEC-------------C---CChHHHHHHHHHHHHHcCCCCeEEEeCCC
Confidence 44444555556 4445566666779999987543 0 2334556777888877642 33332222
Q ss_pred CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017148 144 GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 144 g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+|+ .++.++++ +.+++.++.+|. . .+++-+++.+.++. .++||.+.=.+.+..++.
T Consensus 137 ~w~----~~~A~~~~-~~l~~~~i~~iE----q------------P~~~~d~~~~~~l~---~~~PIa~dEs~~~~~~~~ 192 (263)
T cd03320 137 GWS----LEEALAFL-EALAAGRIEYIE----Q------------PLPPDDLAELRRLA---AGVPIALDESLRRLDDPL 192 (263)
T ss_pred CCC----HHHHHHHH-HhhcccCCceEE----C------------CCChHHHHHHHHhh---cCCCeeeCCccccccCHH
Confidence 332 34444443 344566776655 0 11222344444544 379999988899999999
Q ss_pred HHHH-cCcCeeEE
Q 017148 224 AALR-KGAHHVMV 235 (376)
Q Consensus 224 ~~l~-~Gad~Vmi 235 (376)
++++ ..+|.|++
T Consensus 193 ~~~~~~~~d~v~~ 205 (263)
T cd03320 193 ALAAAGALGALVL 205 (263)
T ss_pred HHHhcCCCCEEEE
Confidence 9998 46888877
No 405
>PLN02334 ribulose-phosphate 3-epimerase
Probab=91.81 E-value=8.1 Score=35.46 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=74.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCC
Q 017148 66 PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV 145 (376)
Q Consensus 66 p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~ 145 (376)
.+...+...+...+.+..+.+.+.|++.|-+..- .+.|- .+..+--++++++++.++.++.+-+-+
T Consensus 9 ~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~--------d~~f~----~~~~~g~~~~~~l~~~~~~~~~vhlmv-- 74 (229)
T PLN02334 9 IIAPSILSADFANLAEEAKRVLDAGADWLHVDVM--------DGHFV----PNLTIGPPVVKALRKHTDAPLDCHLMV-- 74 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecc--------cCCcC----CccccCHHHHHHHHhcCCCcEEEEecc--
Confidence 4667777778778889999999999999888431 11111 111111256666766666665554333
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCc-cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCC-CCHHHHH
Q 017148 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVN 223 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~-~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI-~s~~da~ 223 (376)
.+.. +.++ . +.++|+|.|++|.+. .. . .....+..+.+. ++-+-..-.- +..+.++
T Consensus 75 ~~p~---d~~~---~-~~~~gad~v~vH~~q~~~--d-----------~~~~~~~~i~~~--g~~iGls~~~~t~~~~~~ 132 (229)
T PLN02334 75 TNPE---DYVP---D-FAKAGASIFTFHIEQAST--I-----------HLHRLIQQIKSA--GMKAGVVLNPGTPVEAVE 132 (229)
T ss_pred CCHH---HHHH---H-HHHcCCCEEEEeeccccc--h-----------hHHHHHHHHHHC--CCeEEEEECCCCCHHHHH
Confidence 2212 2221 1 236899999999872 10 0 002344444432 3322222222 2345555
Q ss_pred HHHHc-CcCeeEEch
Q 017148 224 AALRK-GAHHVMVGR 237 (376)
Q Consensus 224 ~~l~~-Gad~VmiGR 237 (376)
+.+.. |+|.|++|.
T Consensus 133 ~~~~~~~~Dyi~~~~ 147 (229)
T PLN02334 133 PVVEKGLVDMVLVMS 147 (229)
T ss_pred HHHhccCCCEEEEEE
Confidence 55554 399999864
No 406
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.75 E-value=5.2 Score=37.39 Aligned_cols=126 Identities=8% Similarity=0.062 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+.+.+-++.++++|+|+|-+-+=.|. +. -|.+.+.++++... +.|+|.--- +|...+..+.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~~d------g~------vD~~~~~~Li~~a~---~~~vTFHRA--fD~~~d~~~al 134 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLDVD------GH------VDMPRMRKIMAAAG---PLAVTFHRA--FDMCANPLNAL 134 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCC------CC------cCHHHHHHHHHHhc---CCceEEech--hhccCCHHHHH
Confidence 355666777888999999988543222 11 46677788877753 466666422 44433333332
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017148 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
..+. +.|++.|--||+...- .-..+.+.++.+...+.-|+.-||| +.+.+.+..++|+.-|=.
T Consensus 135 ---~~l~-~lG~~rILTSGg~~~a------------~~g~~~L~~lv~~a~~~~Im~GgGV-~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 135 ---KQLA-DLGVARILTSGQQQDA------------EQGLSLIMELIAASDGPIIMAGAGV-RLSNLHKFLDAGVREVHS 197 (248)
T ss_pred ---HHHH-HcCCCEEECCCCCCCH------------HHHHHHHHHHHHhcCCCEEEeCCCC-CHHHHHHHHHcCCCEEee
Confidence 3333 5799999888765310 0115566777665545447777777 677787777789876654
No 407
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=91.66 E-value=1.6 Score=40.21 Aligned_cols=147 Identities=15% Similarity=0.158 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHCCCCEEEecCC--------------------------C--------------------CCccc-cCCCC
Q 017148 78 NLAKATELANAYNYDEINLNCG--------------------------C--------------------PSPKV-AGHGC 110 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g--------------------------c--------------------P~~~v-~r~g~ 110 (376)
+..++|..++++|+|+|-+|.- . |-+.. .-+++
T Consensus 22 dpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTeg 101 (234)
T cd00003 22 DPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPEKREELTTEG 101 (234)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCc
Confidence 4578889999999999988752 1 11111 12444
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC
Q 017148 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|-.+..+.+.+.++++.+++. ++.|++-+-+ +.+. ++ ...+.|+|.|.+|.+.-.... .... .
T Consensus 102 -Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP------d~~q-i~----~A~~~GAd~VELhTG~Ya~a~-~~~~---~ 164 (234)
T cd00003 102 -GLDVAGQAEKLKPIIERLKDA-GIRVSLFIDP------DPEQ-IE----AAKEVGADRVELHTGPYANAY-DKAE---R 164 (234)
T ss_pred -cchhhcCHHHHHHHHHHHHHC-CCEEEEEeCC------CHHH-HH----HHHHhCcCEEEEechhhhcCC-Cchh---H
Confidence 777788889999999998764 6677764433 1222 11 234689999999976521110 0000 0
Q ss_pred CcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017148 191 PPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 191 ~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
.--++.+. +...+. ++-|=+--|+ +.+.+..+.+ .+..=|-||.+++.+--
T Consensus 165 -~~el~~i~~aa~~a~~~-GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~Al 219 (234)
T cd00003 165 -EAELERIAKAAKLAREL-GLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISRAL 219 (234)
T ss_pred -HHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHHHH
Confidence 00022222 222222 5655555565 7788777766 78888999999877654
No 408
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=91.64 E-value=13 Score=35.47 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=90.6
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.+...|+++++.+.+.++..+.|+.++++|+|+|-+-. |. |.. ...+.+.+-.+.|.+.++.|+.+-
T Consensus 67 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p--P~--------~~~---~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 67 VNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT--PY--------YNK---PTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred hCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC--Cc--------CCC---CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 44567999999999999999999999999999998842 32 110 134667788888887788998876
Q ss_pred ecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017148 141 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
--++.... -+. ++ +.++.+.-.+-.+--+.. +...+.++.+..++--.+.+|. -
T Consensus 134 n~P~~~g~~l~~-~~---~~~L~~~p~v~giK~s~~------------------d~~~~~~~~~~~~~~~~v~~G~---d 188 (292)
T PRK03170 134 NVPGRTGVDILP-ET---VARLAEHPNIVGIKEATG------------------DLERVSELIELVPDDFAVYSGD---D 188 (292)
T ss_pred ECccccCCCCCH-HH---HHHHHcCCCEEEEEECCC------------------CHHHHHHHHHhCCCCeEEEECC---h
Confidence 43321111 122 22 233322122333222111 1333444444333222344442 1
Q ss_pred HHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017148 220 DEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 220 ~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
..+...+..|++|++.|.+-+ .|.++.+.++....|
T Consensus 189 ~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~~~~~g 224 (292)
T PRK03170 189 ALALPFLALGGVGVISVAANV-APKEMAEMCDAALAG 224 (292)
T ss_pred HhHHHHHHcCCCEEEEhHHhh-hHHHHHHHHHHHHCC
Confidence 223455668999999888753 477765555544444
No 409
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.60 E-value=3.1 Score=37.63 Aligned_cols=124 Identities=11% Similarity=0.187 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHH
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLC 155 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~ 155 (376)
.+.+.+-++.++++|+|++-+-+=.+ .+. -|.+.+.+++++.. +.|++. .| -+|...+..+.+
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L~~------dg~------iD~~~~~~Li~~a~---~~~~tF-HR-AfD~~~d~~~al 133 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGALTE------DGE------IDEEALEELIEAAG---GMPVTF-HR-AFDEVPDPEEAL 133 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--BET------TSS------B-HHHHHHHHHHHT---TSEEEE--G-GGGGSSTHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeECC------CCC------cCHHHHHHHHHhcC---CCeEEE-eC-cHHHhCCHHHHH
Confidence 35566777788999999998854212 111 36678888888765 567777 33 355544444443
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHH-cCcCee
Q 017148 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAHHV 233 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~-~Gad~V 233 (376)
+ .+. +.|++.|--||+.... .-..+.++++++.. .+|.|+.-||| +.+.+..+++ +|+.-+
T Consensus 134 ~---~L~-~lG~~rVLTSGg~~~a------------~~g~~~L~~lv~~a~~~i~Im~GgGv-~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 134 E---QLI-ELGFDRVLTSGGAPTA------------LEGIENLKELVEQAKGRIEIMPGGGV-RAENVPELVEETGVREI 196 (201)
T ss_dssp H---HHH-HHT-SEEEESTTSSST------------TTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHHT-SEE
T ss_pred H---HHH-hcCCCEEECCCCCCCH------------HHHHHHHHHHHHHcCCCcEEEecCCC-CHHHHHHHHHhhCCeEE
Confidence 3 333 4699998888765210 01155566665443 36889999999 5566777777 887755
No 410
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.51 E-value=5.6 Score=39.09 Aligned_cols=158 Identities=12% Similarity=0.158 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEecC-------CCCCccccCCCCccccccCCHHH----HHHHHHHHhcc-cCccEEEEecC
Q 017148 76 LDNLAKATELANAYNYDEINLNC-------GCPSPKVAGHGCFGVSLMLDPKF----VGEAMSVIAAN-TNVPVSVKCRI 143 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~-------gcP~~~v~r~g~yG~~l~~~~~~----~~eiv~~v~~~-~~~pv~vKiR~ 143 (376)
.....+..+.+.++||.+|++-. |-|.+.+.+..+ ..+++|..-+ +..+++.+++. .++|+.+-+--
T Consensus 68 ~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~-~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pvivsI~~ 146 (344)
T PRK05286 68 FDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPE-DEALINRMGFNNDGADALAERLKKAYRGIPLGINIGK 146 (344)
T ss_pred CCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEeccc-ccccccCCCCCCHhHHHHHHHHHHhcCCCcEEEEEec
Confidence 33455677778899999999853 333333332221 1223332221 34444444433 56888887732
Q ss_pred C--CCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC----CCeEEE--ecC
Q 017148 144 G--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP----DLTFTL--NGG 215 (376)
Q Consensus 144 g--~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~----~ipVi~--nGg 215 (376)
. .+.....++.++.+.++ + .++|+|.+.-......|... ...+....+.+.++++... ++||++ +-+
T Consensus 147 ~~~~~~~~~~~d~~~~~~~~-~-~~ad~lelN~scP~~~g~~~---~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~ 221 (344)
T PRK05286 147 NKDTPLEDAVDDYLICLEKL-Y-PYADYFTVNISSPNTPGLRD---LQYGEALDELLAALKEAQAELHGYVPLLVKIAPD 221 (344)
T ss_pred CCCCCcccCHHHHHHHHHHH-H-hhCCEEEEEccCCCCCCccc---ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC
Confidence 1 11112345555544433 2 26999987532221112110 0111112345555555442 288874 334
Q ss_pred CC--CHHHHHHHHH-cCcCeeEEchHH
Q 017148 216 IN--TVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 216 I~--s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
+. +..++.++++ .|+|+|.+--..
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 43 2334444444 899998875433
No 411
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=91.45 E-value=2.1 Score=39.63 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHCCCCEEEecCC--------------------------C--------------------CCccc-cCCCC
Q 017148 78 NLAKATELANAYNYDEINLNCG--------------------------C--------------------PSPKV-AGHGC 110 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g--------------------------c--------------------P~~~v-~r~g~ 110 (376)
+..++|..++++|+|+|-+|.- . |-... .-+++
T Consensus 25 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE~r~E~TTeg 104 (239)
T PRK05265 25 DPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPEKREELTTEG 104 (239)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCc
Confidence 4678888999999999988752 1 11111 12444
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC
Q 017148 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|-.+..+.+.+.++++.+++. ++.|++-+-+ +.+. ++ ...+.|+|.|.+|.+.-.... ....
T Consensus 105 -Gldv~~~~~~l~~~i~~L~~~-gIrVSLFidP------~~~q-i~----~A~~~GAd~VELhTG~yA~a~-~~~~---- 166 (239)
T PRK05265 105 -GLDVAGQFDKLKPAIARLKDA-GIRVSLFIDP------DPEQ-IE----AAAEVGADRIELHTGPYADAK-TEAE---- 166 (239)
T ss_pred -cchhhcCHHHHHHHHHHHHHC-CCEEEEEeCC------CHHH-HH----HHHHhCcCEEEEechhhhcCC-Ccch----
Confidence 777788889999999998753 6677765422 2222 11 234689999999977521110 0000
Q ss_pred CcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCc
Q 017148 191 PPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 191 ~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~ 244 (376)
.--++.+. +...+. ++-|=+-.|+ +.+.+..+.. .+.+=|-||.+++.+--
T Consensus 167 -~~el~~~~~aa~~a~~l-GL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia~Al 221 (239)
T PRK05265 167 -AAELERIAKAAKLAASL-GLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAIIARAL 221 (239)
T ss_pred -HHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHHHHHH
Confidence 00022222 222222 5666666666 7777777655 68889999999887654
No 412
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=91.35 E-value=10 Score=36.27 Aligned_cols=110 Identities=11% Similarity=0.073 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcC--CccEEEEccCccccCCCCCCCCCCCCcccHH
Q 017148 119 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYE 196 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~--Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~ 196 (376)
.+...+.+....+..+.|+.+-+.. . +.+++.+. ++.++++ ++|+|.+.-......+.+ ......+....+
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g--~---~~~~~~~~-a~~~~~~~~~~d~ielN~~cP~~~~~g-~~l~~~~~~~~e 147 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG--S---SVEEFAEV-AEKLEKAPPYVDAYELNLSCPHVKGGG-IAIGQDPELSAD 147 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec--C---CHHHHHHH-HHHHHhccCccCEEEEECCCCCCCCCc-cccccCHHHHHH
Confidence 4444555554445556788877643 1 23344443 3344555 399999864433222211 111111122245
Q ss_pred HHHHHHhhCCCCeEEEec--CCCCHHHHHHHHH-cCcCeeEEc
Q 017148 197 YYYALLRDFPDLTFTLNG--GINTVDEVNAALR-KGAHHVMVG 236 (376)
Q Consensus 197 ~v~~~~~~~~~ipVi~nG--gI~s~~da~~~l~-~Gad~VmiG 236 (376)
.+.++++.. ++||++=- ++.+..++.+.++ .|+|++.+.
T Consensus 148 iv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 148 VVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 556665544 78887543 3434444444454 899999873
No 413
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=91.16 E-value=1.2 Score=40.16 Aligned_cols=181 Identities=14% Similarity=0.203 Sum_probs=88.8
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeecccccccchhhhhhccCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEe
Q 017148 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINL 96 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~Iei 96 (376)
+|.|+..=..++...| ++++..-+.......-......++....+ +..|=++.+.+ ..+..+.+++++.|.|.|
T Consensus 4 CGi~~~~da~~~~~~g-~d~~Gfi~~~~S~R~v~~~~a~~l~~~~~---~~~VgVf~~~~--~~~I~~~~~~~~ld~vQL 77 (197)
T PF00697_consen 4 CGITRPEDARLAAELG-ADYLGFIFYPKSPRYVSPDQARELVSAVP---PKIVGVFVNQS--PEEILEIVEELGLDVVQL 77 (197)
T ss_dssp E---SHHHHHHHHHHT-SSEEEEE--TTCTTB--HHHHHHHHCCSS---SSEEEEESSS---HHHHHHHHHHCTESEEEE
T ss_pred CCCCcHHHHHHHHHcC-CCEEeeecCCCCCCccCHHHHHHHHHhcC---CCEEEEEcCCC--HHHHHHHHHHcCCCEEEE
Confidence 4666666666777776 54432212111111111112233333222 21444555542 344556678899999999
Q ss_pred cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCc
Q 017148 97 NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 97 N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
|..- +. +.++.++. ++|+.-.++...+.. ..+. +.....+|++.+.++.
T Consensus 78 HG~e------------------~~---e~~~~l~~--~~~vi~~~~v~~~~~-~~~~-------~~~~~~~d~~LlD~~~ 126 (197)
T PF00697_consen 78 HGDE------------------SP---EYIKLLRA--GLPVIKAIHVDKDID-LLDY-------LERYESVDYFLLDSGS 126 (197)
T ss_dssp -SGG-------------------H---HHHHHHHT--TSEEEEEEEESSCHS-CCHH-------CHCSTT-SEEEEESSS
T ss_pred CCCC------------------CH---HHHHHhhc--CceEEEEEEeCCccc-hHHH-------HHhcccccEEeEccCC
Confidence 8411 11 22233332 467776666643221 1111 1112334899888432
Q ss_pred cccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCch
Q 017148 177 ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~l 245 (376)
+|.+ ...+|+.+.++.+...+.|++..||| +++.+.++++ .+..+|=+-+|.=.+|-.
T Consensus 127 ---GgtG-------~~~dw~~~~~~~~~~~~~p~iLAGGl-~p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 127 ---GGTG-------KTFDWSLLKKIVESYSPKPVILAGGL-NPENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp ---TSSS-------S---GGGGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred ---CcCC-------cccCHHHhhhhhhhcccCcEEEEcCC-ChHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 2211 11235544444443336899999999 7888888888 889999999998777754
No 414
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.10 E-value=4.5 Score=38.95 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+.++.+.+.|.|+|=++ |.-|-+..-..+.=.++++.+++.+ .+||.+-+.. .+.+
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~-----------GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-----~~t~ 86 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVL-----------GTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-----NSTA 86 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC-----------CCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-----CcHH
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL 212 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~ 212 (376)
+.++ +++.+++.|+|+|-+.. +.-+......-++++..+.++. ++|||.
T Consensus 87 eai~-lak~a~~~Gad~il~v~---------PyY~k~~~~gl~~hf~~ia~a~-~lPvil 135 (299)
T COG0329 87 EAIE-LAKHAEKLGADGILVVP---------PYYNKPSQEGLYAHFKAIAEAV-DLPVIL 135 (299)
T ss_pred HHHH-HHHHHHhcCCCEEEEeC---------CCCcCCChHHHHHHHHHHHHhc-CCCEEE
No 415
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=90.90 E-value=15 Score=35.04 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=90.0
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEE
Q 017148 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSV 139 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~v 139 (376)
.....|+++++.+.+.++..+.++.++++|+|+|-+- -|... . ...+.+.+-.++|.+.+ +.|+.+
T Consensus 67 ~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~--~P~y~-------~----~~~~~i~~yf~~v~~~~~~lpv~l 133 (290)
T TIGR00683 67 AKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV--TPFYY-------K----FSFPEIKHYYDTIIAETGGLNMIV 133 (290)
T ss_pred hCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEe--CCcCC-------C----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 4456799999999999999999999999999999883 24321 1 13466777777776655 689887
Q ss_pred EecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017148 140 KCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 140 KiR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
---++.... -+. ++ +.++.+.-.+-.|--..+ +...+.++++..+++. +.+|.
T Consensus 134 Yn~P~~tg~~l~~-~~---i~~L~~~pnv~giK~s~~------------------d~~~~~~~~~~~~~~~-v~~G~--- 187 (290)
T TIGR00683 134 YSIPFLTGVNMGI-EQ---FGELYKNPKVLGVKFTAG------------------DFYLLERLKKAYPNHL-IWAGF--- 187 (290)
T ss_pred EeCccccccCcCH-HH---HHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhCCCCE-EEECc---
Confidence 643322211 122 22 233332122222221111 1344455555555554 44554
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017148 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
-+.+...+..|++|.+.|.+-+. |..+.+..+....|
T Consensus 188 d~~~~~~l~~G~~G~i~~~~n~~-P~~~~~i~~~~~~g 224 (290)
T TIGR00683 188 DEMMLPAASLGVDGAIGSTFNVN-GVRARQIFELTKAG 224 (290)
T ss_pred hHHHHHHHHCCCCEEEecHHHhC-HHHHHHHHHHHHCC
Confidence 13344556679999997755442 66654444443344
No 416
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=90.89 E-value=2.4 Score=40.93 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHH
Q 017148 118 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY 197 (376)
Q Consensus 118 ~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~ 197 (376)
.++.+.+-++++++.++.|+.|-+..- . ....+.++. +.+.|++.|.++.+.. .+.
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~-~--~~~~~~~~~----~~~~~v~~v~~~~g~p-----------------~~~ 101 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLL-S--PFVDELVDL----VIEEKVPVVTTGAGNP-----------------GKY 101 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecC-C--CCHHHHHHH----HHhCCCCEEEEcCCCc-----------------HHH
Confidence 588899999999988888988766442 1 223333332 2358999998764321 234
Q ss_pred HHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEE
Q 017148 198 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 198 v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vmi 235 (376)
+.++++. +++|+. .|.+.+.+.++.+.|+|.|.+
T Consensus 102 i~~lk~~--g~~v~~--~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 102 IPRLKEN--GVKVIP--VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHHHc--CCEEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 5555443 677774 889999999999999999987
No 417
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=90.86 E-value=5.1 Score=40.13 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHH-HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~-~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.+.++.+. +.||..+-|..|- .+++.-.+.|+++|+.++ +.+.+-.--+| +.+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~----------------~~~~~di~~v~avRea~~~~~l~vDaN~~w----~~~ 227 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV----------------LPGEEEIEAVKALAEAFPGARLRLDPNGAW----SLE 227 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC----------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCc----CHH
Confidence 6777877776665 4699999885431 234555678888888762 23333333233 244
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
+.++++ +.+++ ++.+|. . .++ +++.++++++.. ++||.+.=.+.+.+++.++++ ..+|
T Consensus 228 ~A~~~~-~~l~~-~l~~iE----e------------P~~--d~~~~~~L~~~~-~~PIa~dEs~~~~~~~~~~i~~~avd 286 (395)
T cd03323 228 TAIRLA-KELEG-VLAYLE----D------------PCG--GREGMAEFRRAT-GLPLATNMIVTDFRQLGHAIQLNAVD 286 (395)
T ss_pred HHHHHH-HhcCc-CCCEEE----C------------CCC--CHHHHHHHHHhc-CCCEEcCCcccCHHHHHHHHHcCCCc
Confidence 545443 34455 666544 0 111 366667777664 899988777899999999998 4578
Q ss_pred eeEE
Q 017148 232 HVMV 235 (376)
Q Consensus 232 ~Vmi 235 (376)
.+++
T Consensus 287 il~~ 290 (395)
T cd03323 287 IPLA 290 (395)
T ss_pred EEee
Confidence 7743
No 418
>TIGR03586 PseI pseudaminic acid synthase.
Probab=90.77 E-value=13 Score=36.19 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEe-----------cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCC
Q 017148 76 LDNLAKATELANAYNYDEINL-----------NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG 144 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~Iei-----------N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g 144 (376)
.+++.+..+.+++.|.+.+-- .+++|.-|+ |+.-+++..++..+-+ +++||.+|.-.+
T Consensus 76 ~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI------~S~~~~n~~LL~~va~-----~gkPvilstG~~ 144 (327)
T TIGR03586 76 WEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKI------ASFEITDLPLIRYVAK-----TGKPIIMSTGIA 144 (327)
T ss_pred HHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEE------CCccccCHHHHHHHHh-----cCCcEEEECCCC
Confidence 456666777777777666533 234555443 5555677777666543 488999886652
Q ss_pred CCCCccHHHHHHHHHHHhhcCCc-cEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHH
Q 017148 145 VDDHDSYNQLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVN 223 (376)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~e~~Gv-d~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~ 223 (376)
+++|+...+. .+.+.|. +.+.+|+ +..| .. ....+++..+..+++.+ ++||..++--....-..
T Consensus 145 -----t~~Ei~~Av~-~i~~~g~~~i~LlhC-~s~Y--P~-----~~~~~nL~~i~~lk~~f-~~pVG~SDHt~G~~~~~ 209 (327)
T TIGR03586 145 -----TLEEIQEAVE-ACREAGCKDLVLLKC-TSSY--PA-----PLEDANLRTIPDLAERF-NVPVGLSDHTLGILAPV 209 (327)
T ss_pred -----CHHHHHHHHH-HHHHCCCCcEEEEec-CCCC--CC-----CcccCCHHHHHHHHHHh-CCCEEeeCCCCchHHHH
Confidence 3444444333 3346787 5666786 3222 11 11234577777777777 89997765444444455
Q ss_pred HHHHcCcC
Q 017148 224 AALRKGAH 231 (376)
Q Consensus 224 ~~l~~Gad 231 (376)
.+...||+
T Consensus 210 aAva~GA~ 217 (327)
T TIGR03586 210 AAVALGAC 217 (327)
T ss_pred HHHHcCCC
Confidence 55567887
No 419
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=90.76 E-value=13 Score=33.83 Aligned_cols=175 Identities=11% Similarity=0.166 Sum_probs=88.1
Q ss_pred CCCChHHHHHHHHHhCCCcEEEecceeeccccc--ccchhhhhhc-cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCE
Q 017148 17 MDWTDNHYRTLARLISKHAWLYTEMLAAETIIY--QQGNLDRFLA-FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDE 93 (376)
Q Consensus 17 ~~~td~~~r~~~~~~Gg~gl~~te~v~~~~~~~--~~~~~~~~~~-~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~ 93 (376)
+|+|+..=..++.++| ++.+ +++....--+ .......+.. +.+.-.+++|= ...+++.. .+.+++.+.|.
T Consensus 6 CGit~~eda~~~~~~G-aD~i--GfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf-~~~~~~~i---~~~~~~~~~d~ 78 (207)
T PRK13958 6 CGFTTIKDVTAASQLP-IDAI--GFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVV-VNPDLTTI---EHILSNTSINT 78 (207)
T ss_pred cCCCcHHHHHHHHHcC-CCEE--EEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEE-eCCCHHHH---HHHHHhCCCCE
Confidence 5778888777787776 5544 3332111000 1111122322 22222233331 23445544 44566789999
Q ss_pred EEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE
Q 017148 94 INLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 94 IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
|.||..- ++++ ++.+++.. .+++.--++. ++ ... ..+... . ..+|++.+
T Consensus 79 vQLHG~e-----------------~~~~----~~~l~~~~~~~~iika~~~--~~-~~~----~~~~~~-~-~~~d~~Ll 128 (207)
T PRK13958 79 IQLHGTE-----------------SIDF----IQEIKKKYSSIKIIKALPA--DE-NII----QNINKY-K-GFVDLFII 128 (207)
T ss_pred EEECCCC-----------------CHHH----HHHHhhcCCCceEEEEecc--cH-HHH----HHHHHH-H-hhCCEEEE
Confidence 9998521 1222 33344322 2444333333 21 111 111211 1 24788888
Q ss_pred ccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH--cCcCeeEEchHHh
Q 017148 173 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGRAAY 240 (376)
Q Consensus 173 h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~--~Gad~VmiGRa~l 240 (376)
.......+|.+ ...+|+.+..+ ...|++..||| +++.+.+++. .+..+|=+.+|.=
T Consensus 129 Ds~~~~~GGtG-------~~~dw~~~~~~----~~~p~iLAGGL-~peNV~~a~~~~~~p~gVDvsSGVE 186 (207)
T PRK13958 129 DTPSVSYGGTG-------QTYDWTILKHI----KDIPYLIAGGI-NSENIQTVEQLKLSHQGYDIASGIE 186 (207)
T ss_pred cCCCCCCCcCC-------cEeChHHhhhc----cCCCEEEECCC-CHHHHHHHHhcCCCCCEEEcccccC
Confidence 76432223322 12247666543 24689999999 7888888764 4667777776653
No 420
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=90.72 E-value=14 Score=34.49 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=65.0
Q ss_pred CCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecC
Q 017148 65 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI 143 (376)
Q Consensus 65 ~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~ 143 (376)
..+++-|.|.+++++.+.++.+...|+|.||+=+ |.+.. ..+.+.+.+++..+++.. ++|+.+-+|.
T Consensus 16 ~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRl----------D~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~ 83 (253)
T PRK02412 16 PKIIVPIMGKTLEEVLAEALAISKYDADIIEWRA----------DFLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRT 83 (253)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEe----------chhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 3578889999999999999888888999999954 22221 124567777888887754 5799988887
Q ss_pred CCCCC---ccHHHHHHHHHHHhhcCC-ccEEEEcc
Q 017148 144 GVDDH---DSYNQLCDFIYKVSSLSP-TRHFIIHS 174 (376)
Q Consensus 144 g~~~~---~~~~~~~~~i~~~~e~~G-vd~I~vh~ 174 (376)
-++.. .+-++-.+.+..++ +.| +|+|.|--
T Consensus 84 ~~eGG~~~~~~~~~~~ll~~~~-~~~~~d~vDiEl 117 (253)
T PRK02412 84 AKEGGEIALSDEEYLALIKAVI-KSGLPDYIDVEL 117 (253)
T ss_pred hhhCCCCCCCHHHHHHHHHHHH-hcCCCCEEEEec
Confidence 54321 11222233334444 467 89999864
No 421
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=90.65 E-value=3.1 Score=39.78 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=57.6
Q ss_pred HHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHH
Q 017148 122 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA 200 (376)
Q Consensus 122 ~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~ 200 (376)
+.+.++.+|+.. ..+|.|-+ ++++++.+. + ++|+|.|-+...+. +.+.+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv-------~tleqa~ea----~-~agaDiI~LDn~~~------------------e~l~~ 225 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEA-------DTPKEAIAA----L-RAQPDVLQLDKFSP------------------QQATE 225 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEEC-------CCHHHHHHH----H-HcCCCEEEECCCCH------------------HHHHH
Confidence 345566666544 23455532 345554432 2 59999998854331 22222
Q ss_pred HH---h-hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 201 LL---R-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 201 ~~---~-~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
.+ + ..+++.+-++||| +.+.+.+..++|+|.+.+|---.. |++
T Consensus 226 av~~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal~~a-~~~ 272 (284)
T PRK06096 226 IAQIAPSLAPHCTLSLAGGI-NLNTLKNYADCGIRLFITSAPYYA-APA 272 (284)
T ss_pred HHHHhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEECccccC-CCc
Confidence 22 2 2357889999999 899999999999999988865333 553
No 422
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=90.60 E-value=8.6 Score=37.30 Aligned_cols=123 Identities=7% Similarity=0.133 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC--ccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~--~pv~vKiR~g~~~~~~~~ 152 (376)
+++.+.+.++...+.||..+-+..|- .+++.-.+.|+++++.++ ..+.+-.--+|+ .+
T Consensus 118 ~~~~~~~~a~~~~~~G~~~~KvKvG~----------------~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~----~~ 177 (320)
T PRK02714 118 AGEAALQQWQTLWQQGYRTFKWKIGV----------------DPLEQELKIFEQLLERLPAGAKLRLDANGGLS----LE 177 (320)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEECC----------------CChHHHHHHHHHHHHhcCCCCEEEEECCCCCC----HH
Confidence 34556666666666788887663220 234445566777777653 333333333343 33
Q ss_pred HHHHHHHHHhhc---CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHc-
Q 017148 153 QLCDFIYKVSSL---SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK- 228 (376)
Q Consensus 153 ~~~~~i~~~~e~---~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~- 228 (376)
+..+++. .+++ .++.+|- ..+++.+++...++.+.. ++||.+.=.+.+..|+..+++.
T Consensus 178 ~A~~~~~-~l~~l~~~~i~~iE----------------qP~~~~~~~~~~~l~~~~-~~Pia~DEs~~~~~d~~~~~~~~ 239 (320)
T PRK02714 178 EAKRWLQ-LCDRRLSGKIEFIE----------------QPLPPDQFDEMLQLSQDY-QTPIALDESVANLAQLQQCYQQG 239 (320)
T ss_pred HHHHHHH-HHhhccCCCccEEE----------------CCCCcccHHHHHHHHHhC-CCCEEECCccCCHHHHHHHHHcC
Confidence 4344333 2333 3555443 012222356666776654 8999998899999999999985
Q ss_pred CcCeeEE
Q 017148 229 GAHHVMV 235 (376)
Q Consensus 229 Gad~Vmi 235 (376)
.+|.|++
T Consensus 240 a~d~v~i 246 (320)
T PRK02714 240 WRGIFVI 246 (320)
T ss_pred CCCEEEE
Confidence 4566554
No 423
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=90.59 E-value=21 Score=36.12 Aligned_cols=192 Identities=14% Similarity=0.112 Sum_probs=107.9
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhh----c-cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFL----A-FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~----~-~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||++++= -|.+....+..-.+...... + ..+++ .-..++|.+ +++++.+-++
T Consensus 169 PklGLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~em~~ra~ 247 (424)
T cd08208 169 PNIGLPPGEFAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANITD-EVDRLMELHD 247 (424)
T ss_pred ccccCCHHHHHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHH
Confidence 66688888998876 4567777653 23333222222111111111 0 11223 236789988 6999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-------CccHHHHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-------HDSYNQLCDF 157 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-------~~~~~~~~~~ 157 (376)
.++++|...+-+|.. .. |- ..++.+++..++|+-. .|.++.- .-+. ..
T Consensus 248 ~a~~~G~~~vmv~~~--------~~--G~----------~al~~L~~~~~l~iha-Hra~~ga~~r~~~~Gis~----~v 302 (424)
T cd08208 248 VAVRNGANALLINAM--------PV--GL----------SAVRMLRKHAQVPLIA-HFPFIASFSRLEKYGIHS----RV 302 (424)
T ss_pred HHHHhCCCEEEEeee--------cc--cH----------HHHHHHHhcCCCeEEe-ccCccccccCCCCCCCcH----HH
Confidence 999999998888741 12 31 2345555555666643 2332211 1122 12
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHH----hhC---C-CCeEEEecCCCCHHHHHHHHH-c
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL----RDF---P-DLTFTLNGGINTVDEVNAALR-K 228 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~----~~~---~-~ipVi~nGgI~s~~da~~~l~-~ 228 (376)
+.+++.-+|+|.+++.+- .|... .. .+.+.++. +.. + -+| +.+||+ ++..+.+.++ .
T Consensus 303 l~Kl~RLaGaD~ih~~~~----gg~~~-----~~---~~~~~~~~~~~~~~~~~~k~~~P-v~SGG~-~~~~~p~~~~~~ 368 (424)
T cd08208 303 MTKLQRLAGLDVVIMPGF----GPRMM-----TP---EEEVLECVIACLEPMGPIKPCLP-VPGGSD-SALTLQTVYEKV 368 (424)
T ss_pred HHHHHHHcCCCeeeccCC----CCCcc-----ch---HHHHHHHHHHHhCcccCCCCceE-ecccCC-CHhHHHHHHHHh
Confidence 466666799999886431 11100 00 12222221 111 1 134 456777 6777888887 8
Q ss_pred C-cCee-EEchHHhhCCchh
Q 017148 229 G-AHHV-MVGRAAYQNPWYT 246 (376)
Q Consensus 229 G-ad~V-miGRa~l~~P~lf 246 (376)
| .|.| ++|-|+++.||=.
T Consensus 369 G~~Dvil~~GGGi~gHP~G~ 388 (424)
T cd08208 369 GNVDFGFVPGRGVFGHPMGP 388 (424)
T ss_pred CCCCEEEecCccccCCCCCh
Confidence 8 5876 7999999999964
No 424
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=90.58 E-value=16 Score=34.63 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=90.2
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|+++++.+.+.++..+-|+.++++|+|+|-+-. |.. |. ...+.+.+-.+.|.+.+++|+.+-
T Consensus 66 ~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~--P~~-------~~----~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 66 VNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVT--PYY-------NK----PSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred hCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcc--ccc-------CC----CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34567899999999999999999999999999998852 321 11 234667788888877788999876
Q ss_pred ecCCCCCC-ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCC
Q 017148 141 CRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT 218 (376)
Q Consensus 141 iR~g~~~~-~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s 218 (376)
--++.... -+.+ + +.++.+.-.+..|-.+.. +...+.++.+... ++.| ..|. +
T Consensus 133 n~P~~~g~~ls~~-~---~~~L~~~p~v~giK~s~~------------------~~~~~~~~~~~~~~~~~v-~~G~--d 187 (284)
T cd00950 133 NVPGRTGVNIEPE-T---VLRLAEHPNIVGIKEATG------------------DLDRVSELIALCPDDFAV-LSGD--D 187 (284)
T ss_pred EChhHhCCCCCHH-H---HHHHhcCCCEEEEEECCC------------------CHHHHHHHHHhCCCCeEE-EeCC--h
Confidence 43321111 1222 2 233433222333332211 1233344444332 4433 3442 1
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017148 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
..+...+..|++|.+.|.+-+ -|.++.+.++....|
T Consensus 188 -~~~~~~~~~G~~G~~s~~~n~-~p~~~~~~~~~~~~g 223 (284)
T cd00950 188 -ALTLPFLALGGVGVISVAANV-APKLMAEMVRAALAG 223 (284)
T ss_pred -HhHHHHHHCCCCEEEehHHHh-hHHHHHHHHHHHHCC
Confidence 234455678999999988853 356544444433334
No 425
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.54 E-value=6.8 Score=37.33 Aligned_cols=126 Identities=16% Similarity=0.137 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.++|=+|.. +|+ +.+| ..+.=.++++.+++.+ ++||.+-+ .. .+++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs--------~GE-~~~l--s~~Er~~~~~~~~~~~~~~~~vi~gv----~~-~~~~ 83 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGT--------TGE-SPTL--THEEHEELIRAVVEAVNGRVPVIAGT----GS-NSTA 83 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCc--------CCc-cccC--CHHHHHHHHHHHHHHhCCCCcEEeec----CC-chHH
Confidence 6788899999999999999988642 233 2222 2333344444444433 36776533 22 2345
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+ ...-.+++.++.+.. ++||+. .|--.+++.+.++.
T Consensus 84 ~~i~~-a~~a~~~G~d~v~~~pP~--~~~~~-------~~~i~~~~~~ia~~~-~~pv~lYn~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 84 EAIEL-TKFAEKAGADGALVVTPY--YNKPT-------QEGLYQHFKAIAEAT-DLPIILYNVPGRTGVDILPETVARLA 152 (292)
T ss_pred HHHHH-HHHHHHcCCCEEEECCCc--CCCCC-------HHHHHHHHHHHHhcC-CCCEEEEECccccCCCCCHHHHHHHH
Confidence 55554 456678999999986422 11110 011145666666654 788762 35556777777765
Q ss_pred H
Q 017148 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 153 ~ 153 (292)
T PRK03170 153 E 153 (292)
T ss_pred c
Confidence 4
No 426
>PRK01060 endonuclease IV; Provisional
Probab=90.48 E-value=8.5 Score=36.17 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=50.8
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc---EEEEe----cCCCCCCc--
Q 017148 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP---VSVKC----RIGVDDHD-- 149 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p---v~vKi----R~g~~~~~-- 149 (376)
+.++.+.+.+.|||+|||..++|.... . .. ..++.+.++-+.+.+ .++. +++-. ++.-.+..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~-~-~~------~~~~~~~~lk~~~~~-~gl~~~~~~~h~~~~~nl~~~d~~~r 84 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWK-R-KP------LEELNIEAFKAACEK-YGISPEDILVHAPYLINLGNPNKEIL 84 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCc-C-CC------CCHHHHHHHHHHHHH-cCCCCCceEEecceEecCCCCCHHHH
Confidence 778999999999999999999886421 1 11 244455554444432 2333 44322 22222211
Q ss_pred --cHHHHHHHHHHHhhcCCccEEEEccCc
Q 017148 150 --SYNQLCDFIYKVSSLSPTRHFIIHSRK 176 (376)
Q Consensus 150 --~~~~~~~~i~~~~e~~Gvd~I~vh~r~ 176 (376)
+++.+.+. ..++.+.|+..|++|++.
T Consensus 85 ~~s~~~~~~~-i~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 85 EKSRDFLIQE-IERCAALGAKLLVFHPGS 112 (281)
T ss_pred HHHHHHHHHH-HHHHHHcCCCEEEEcCCc
Confidence 12233332 334567899999999764
No 427
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=90.46 E-value=6 Score=37.62 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|.++|=++.. +|+ +-+| ..+.=.++++.+.+.+ .+||.+-+ .. .+++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~Gs--------tGE-~~~L--s~~Er~~~~~~~~~~~~~~~~vi~gv----~~-~s~~ 80 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGT--------TGE-SPTL--SHEEHKKVIEFVVDLVNGRVPVIAGT----GS-NATE 80 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc--------Ccc-cccC--CHHHHHHHHHHHHHHhCCCCeEEEeC----CC-ccHH
Confidence 6788888889888999999987642 233 3222 2333334444444333 36777643 22 3455
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE------ecCCCCHHHHHHHH
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAAL 226 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~------nGgI~s~~da~~~l 226 (376)
+.++. ++.+++.|+|++.+..-. +...+ + ..-++++.++.+.. ++||+. .|--.+++.+.++.
T Consensus 81 ~~i~~-a~~a~~~Gad~v~v~pP~--y~~~~--~-----~~i~~~~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 81 EAISL-TKFAEDVGADGFLVVTPY--YNKPT--Q-----EGLYQHFKAIAEEV-DLPIILYNVPSRTGVSLYPETVKRLA 149 (285)
T ss_pred HHHHH-HHHHHHcCCCEEEEcCCc--CCCCC--H-----HHHHHHHHHHHhcC-CCCEEEEECcHHhcCCCCHHHHHHHH
Confidence 66654 456678999999987522 11111 0 11145666776654 788862 35566777777776
Q ss_pred H
Q 017148 227 R 227 (376)
Q Consensus 227 ~ 227 (376)
+
T Consensus 150 ~ 150 (285)
T TIGR00674 150 E 150 (285)
T ss_pred c
Confidence 5
No 428
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=90.43 E-value=6.4 Score=36.78 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=45.6
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC----CccHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCDF 157 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~----~~~~~~~~~~ 157 (376)
.|..+++.|+|-|||+.+-.. | .+--....+. .+++.+++||.|=||+-..+ ..+++.+.+.
T Consensus 13 ~a~~A~~~GAdRiELc~~L~~---------G-GlTPS~g~i~----~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~d 78 (248)
T PRK11572 13 CALTAQQAGADRIELCAAPKE---------G-GLTPSLGVLK----SVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLED 78 (248)
T ss_pred HHHHHHHcCCCEEEEccCcCC---------C-CcCCCHHHHH----HHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 456678899999999643111 1 1223333444 44455678888888773222 1345555555
Q ss_pred HHHHhhcCCccEEEEc
Q 017148 158 IYKVSSLSPTRHFIIH 173 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh 173 (376)
+. .+.+.|+|.+.+-
T Consensus 79 i~-~~~~~GadGvV~G 93 (248)
T PRK11572 79 IA-TVRELGFPGLVTG 93 (248)
T ss_pred HH-HHHHcCCCEEEEe
Confidence 44 4567999998863
No 429
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=90.36 E-value=2.8 Score=37.36 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCc
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA 230 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Ga 230 (376)
.++....+. .+.+.|++.|.+.-++.. ..+.+..+++.+++ ..|+.|.|.+.+++..+++.||
T Consensus 15 ~~~~~~~~~-~l~~~G~~~vev~~~~~~---------------~~~~i~~l~~~~~~-~~iGag~v~~~~~~~~a~~~Ga 77 (190)
T cd00452 15 AEDALALAE-ALIEGGIRAIEITLRTPG---------------ALEAIRALRKEFPE-ALIGAGTVLTPEQADAAIAAGA 77 (190)
T ss_pred HHHHHHHHH-HHHHCCCCEEEEeCCChh---------------HHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCC
Confidence 334444333 344799999998754321 14567777777654 4689999999999999999999
Q ss_pred CeeEEc
Q 017148 231 HHVMVG 236 (376)
Q Consensus 231 d~VmiG 236 (376)
|+++.+
T Consensus 78 ~~i~~p 83 (190)
T cd00452 78 QFIVSP 83 (190)
T ss_pred CEEEcC
Confidence 999876
No 430
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=90.36 E-value=5.9 Score=38.77 Aligned_cols=165 Identities=10% Similarity=0.162 Sum_probs=77.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCC-------CCCccccCCCCccccccCCHH----HHHHHHHHHhc-
Q 017148 64 QHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCG-------CPSPKVAGHGCFGVSLMLDPK----FVGEAMSVIAA- 131 (376)
Q Consensus 64 ~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~g-------cP~~~v~r~g~yG~~l~~~~~----~~~eiv~~v~~- 131 (376)
..|+++ ++..+...+..+.+.++||.+|++--= -|.+.+.+.-+ ..+++|..- -+...++.+++
T Consensus 56 ~NPi~l---AsG~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~-~~~~iN~~Gl~n~G~~~~l~~i~~~ 131 (335)
T TIGR01036 56 PNPLGL---AAGFDKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIE-DEALINRMGFNNHGADVLVERLKRA 131 (335)
T ss_pred CCCcEe---CCccCCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECcc-ccccccCCCCCChhHHHHHHHHhhc
Confidence 345655 222345566777778889999998543 33333222211 122333221 23444444443
Q ss_pred ccCccEEEEecCC--CCCCccHHHHHHHHHHHhhcCCccEEEE--ccCccccCCCCCCCCCCCCcccHHHHHHHHhhC--
Q 017148 132 NTNVPVSVKCRIG--VDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYYYALLRDF-- 205 (376)
Q Consensus 132 ~~~~pv~vKiR~g--~~~~~~~~~~~~~i~~~~e~~Gvd~I~v--h~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-- 205 (376)
..+.|+.|-+... .......+|.++.+.++ .+ .+|+|.+ ++-.. .|.... ..+....+.+..+++..
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~-~~-~ad~iElNlScPn~--~~~~~~---~~~~~~~~i~~~V~~~~~~ 204 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKL-GP-LADYLVVNVSSPNT--PGLRDL---QYKAELRDLLTAVKQEQDG 204 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHH-hh-hCCEEEEEccCCCC--CCcccc---cCHHHHHHHHHHHHHHHHh
Confidence 2345666655322 11122345555444333 22 4899887 33221 121110 11111123344443332
Q ss_pred ----CCCeEEE--ecCCC--CHHHHHHHH-HcCcCeeEEchHH
Q 017148 206 ----PDLTFTL--NGGIN--TVDEVNAAL-RKGAHHVMVGRAA 239 (376)
Q Consensus 206 ----~~ipVi~--nGgI~--s~~da~~~l-~~Gad~VmiGRa~ 239 (376)
.++||++ .-++. +..++.+++ +.|+|||.+---+
T Consensus 205 ~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 205 LRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred hhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 1388875 34444 345555544 4899999875433
No 431
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=90.25 E-value=10 Score=35.49 Aligned_cols=99 Identities=15% Similarity=0.167 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC-
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV- 145 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~- 145 (376)
.+.+..|++.+++.|+|.|-+- || ..+.++++.+.+. ++||.--+-+ |+
T Consensus 93 ~~a~~nA~r~~ke~gA~aVKlE--------------GG------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~GGyk 151 (268)
T COG0413 93 EQALKNAARLMKEAGADAVKLE--------------GG------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLGGYK 151 (268)
T ss_pred HHHHHHHHHHHHHhCCCEEEEc--------------CC------HHHHHHHHHHHHc-CCceEEEecCChhhhhccCCee
Confidence 4556667777888999999663 22 3455666666543 6787655433 11
Q ss_pred ---CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017148 146 ---DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 146 ---~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
.+.++.+++++. ++.++++|+-.+.+.+-. -+...++.+. .+||+|+-|-
T Consensus 152 vqGr~~~~a~~l~~d-A~ale~AGaf~ivlE~Vp------------------~~lA~~IT~~-lsiPtIGIGA 204 (268)
T COG0413 152 VQGRTEESAEKLLED-AKALEEAGAFALVLECVP------------------AELAKEITEK-LSIPTIGIGA 204 (268)
T ss_pred eecCCHHHHHHHHHH-HHHHHhcCceEEEEeccH------------------HHHHHHHHhc-CCCCEEeecC
Confidence 111234444443 456789999988876521 1223344444 5899998773
No 432
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=90.23 E-value=7.7 Score=36.01 Aligned_cols=83 Identities=11% Similarity=0.130 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-----CccH
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-----HDSY 151 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-----~~~~ 151 (376)
..|.+..+.+++.|||.|||+-|.=. -..+.-.++++.+++. -+.||.-.|..+ ..+.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~--------------i~~~~~~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~ 133 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSME--------------ISLEERCNLIERAKDN---GFMVLSEVGKKSPEKDSELTP 133 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccC--------------CCHHHHHHHHHHHHhC---CCeEeccccccCCcccccCCH
Confidence 45666777899999999999865321 1223445556655542 223333333222 1345
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCcc
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKA 177 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~ 177 (376)
.+.++.+.+-+ ++|+++|++-+|..
T Consensus 134 ~~~i~~~~~~L-eAGA~~ViiEarEs 158 (237)
T TIGR03849 134 DDRIKLINKDL-EAGADYVIIEGRES 158 (237)
T ss_pred HHHHHHHHHHH-HCCCcEEEEeehhc
Confidence 56666555445 59999999999864
No 433
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=90.22 E-value=0.18 Score=44.60 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=39.1
Q ss_pred hhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHh
Q 017148 162 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 240 (376)
Q Consensus 162 ~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l 240 (376)
+++...|+|.+=++.. ...+.++.++ .++|||+.|=|.+.+|+.++++.||++|.-..--|
T Consensus 113 i~~~~PD~vEilPg~~-----------------p~vi~~i~~~-~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~L 173 (175)
T PF04309_consen 113 IEQSKPDAVEILPGVM-----------------PKVIKKIREE-TNIPIIAGGLIRTKEDVEEALKAGADAVSTSNKEL 173 (175)
T ss_dssp HHHHT-SEEEEESCCH-----------------HHHHCCCCCC-CSS-EEEESS--SHHHHHHHCCTTCEEEEE--HHH
T ss_pred HhhcCCCEEEEchHHH-----------------HHHHHHHHHh-cCCCEEeecccCCHHHHHHHHHcCCEEEEcCChHh
Confidence 4567788888766521 1222233333 48999999999999999999999999998765433
No 434
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=90.16 E-value=17 Score=34.46 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=89.5
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|+++++.+.+.++..+.|+.++++|+|+|-+-. |.. .. ...+.+.+-.+.|.+.++.||.+-
T Consensus 64 ~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y--------~~---~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 64 VNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT--PYY--------NK---PTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred hCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC--CcC--------CC---CCHHHHHHHHHHHHhcCCCCEEEE
Confidence 34567899999999999999999999999999998843 331 10 235677888888888888998775
Q ss_pred ecC---CCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCC
Q 017148 141 CRI---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGI 216 (376)
Q Consensus 141 iR~---g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI 216 (376)
--+ |.+- +. ++ +.++.+.-.+-.|--+.+ +...+.++++..+ ++.|+.-.+
T Consensus 131 n~P~~tg~~l--~~-~~---l~~L~~~~~v~giK~s~~------------------d~~~~~~l~~~~~~~~~v~~G~d- 185 (285)
T TIGR00674 131 NVPSRTGVSL--YP-ET---VKRLAEEPNIVAIKEATG------------------NLERISEIKAIAPDDFVVLSGDD- 185 (285)
T ss_pred ECcHHhcCCC--CH-HH---HHHHHcCCCEEEEEeCCC------------------CHHHHHHHHHhcCCCeEEEECch-
Confidence 322 2221 22 22 233433222222221111 1333445544443 344433222
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017148 217 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
......+..|+||.+.|-+-+ -|.++.+.++....|
T Consensus 186 ---~~~~~~~~~G~~G~i~~~~~~-~P~~~~~l~~a~~~g 221 (285)
T TIGR00674 186 ---ALTLPMMALGGKGVISVTANV-APKLMKEMVNNALEG 221 (285)
T ss_pred ---HHHHHHHHcCCCEEEehHHHh-hHHHHHHHHHHHHcC
Confidence 334456678999999877753 355544444443344
No 435
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=90.14 E-value=15 Score=36.49 Aligned_cols=141 Identities=18% Similarity=0.140 Sum_probs=83.8
Q ss_pred CCCCEEEEec---CCCHHHHHHHHHHHHHCCCCEEEec--CCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--
Q 017148 63 EQHPIVLQIG---GSNLDNLAKATELANAYNYDEINLN--CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-- 135 (376)
Q Consensus 63 ~~~p~~vQL~---g~~~~~~~~aa~~~~~~G~d~IeiN--~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~-- 135 (376)
.++|++.-+. |-+++.+++.+..+...|.|.|--+ .+.+. =..+..|.+.+.+.+++..+.++.
T Consensus 124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~---------~~p~~eRv~~v~~av~~a~~eTG~~~ 194 (364)
T cd08210 124 PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQP---------FAPFEERVKACQEAVAEANAETGGRT 194 (364)
T ss_pred CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCcc---------CCCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 4778776654 7799999999999999999999332 22221 122335666777777777766654
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCC-CeEEEe-
Q 017148 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLN- 213 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~-ipVi~n- 213 (376)
++.+-+. . ...++.+. ++.++++|++++-|..-.. | +..+..+.++. . +||.+-
T Consensus 195 ~y~~Nit----a--~~~em~~r-a~~a~~~Ga~~vMv~~~~~---G-------------~~~~~~l~~~~-~~l~i~aHr 250 (364)
T cd08210 195 LYAPNVT----G--PPTQLLER-ARFAKEAGAGGVLIAPGLT---G-------------LDTFRELAEDF-DFLPILAHP 250 (364)
T ss_pred eEEEecC----C--CHHHHHHH-HHHHHHcCCCEEEeecccc---h-------------HHHHHHHHhcC-CCcEEEEcc
Confidence 4444322 2 13355554 3345679999988765431 1 34444555543 5 777654
Q ss_pred ---cCC------CCH-HHHHHHHH-cCcCeeEEc
Q 017148 214 ---GGI------NTV-DEVNAALR-KGAHHVMVG 236 (376)
Q Consensus 214 ---GgI------~s~-~da~~~l~-~Gad~VmiG 236 (376)
|-+ .+. --..++.+ .|+|.+.++
T Consensus 251 a~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~~ 284 (364)
T cd08210 251 AFAGAFVSSGDGISHALLFGTLFRLAGADAVIFP 284 (364)
T ss_pred ccccccccCCCcccHHHHHHHHHHHhCCCEEEeC
Confidence 222 222 22445455 899987553
No 436
>PLN02389 biotin synthase
Probab=90.06 E-value=11 Score=37.60 Aligned_cols=146 Identities=13% Similarity=0.136 Sum_probs=72.9
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
.+.++.++++|.|.+.+|+-. .+...++-.-+ .+.+...+.++.+++ .++++..-+=+|..+ +.++.++.+.
T Consensus 178 ~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~~----~s~e~rl~ti~~a~~-~Gi~v~sg~IiGlgE--t~edrv~~l~ 249 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDT-SREYYPNVITT----RSYDDRLETLEAVRE-AGISVCSGGIIGLGE--AEEDRVGLLH 249 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecC-ChHHhCCcCCC----CCHHHHHHHHHHHHH-cCCeEeEEEEECCCC--CHHHHHHHHH
Confidence 356677888899988888764 12111111101 256666777777655 377777666667643 3344443332
Q ss_pred HHhhcC--CccEEEEccCccccCCCCCCCCCCCCccc-HHHHHH--HHh-hCCCCeE-EEecCCC-CHHHHHHHHHcCcC
Q 017148 160 KVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLK-YEYYYA--LLR-DFPDLTF-TLNGGIN-TVDEVNAALRKGAH 231 (376)
Q Consensus 160 ~~~e~~--Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~-~~~v~~--~~~-~~~~ipV-i~nGgI~-s~~da~~~l~~Gad 231 (376)
. +.+. ..+.+.++.-++. .|..-.+ .+++. .+.++- +.+ -.|+..+ +..|-+. ..+....++..||+
T Consensus 250 ~-Lr~L~~~~~~v~l~~l~P~-~GTpL~~---~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN 324 (379)
T PLN02389 250 T-LATLPEHPESVPINALVAV-KGTPLED---QKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGAN 324 (379)
T ss_pred H-HHhcccCCcEEecccceec-CCCcCCC---CCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCC
Confidence 2 2223 4566655432221 1110000 11111 222221 112 1344333 4445443 44446777789999
Q ss_pred eeEEchH
Q 017148 232 HVMVGRA 238 (376)
Q Consensus 232 ~VmiGRa 238 (376)
.+|+|==
T Consensus 325 ~~~~g~~ 331 (379)
T PLN02389 325 SIFTGDK 331 (379)
T ss_pred EEEECCc
Confidence 9999854
No 437
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=90.04 E-value=14 Score=34.43 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecC
Q 017148 64 QHPIVLQIG-GSNLDNLAKATELANAYNYDEINLNC 98 (376)
Q Consensus 64 ~~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~ 98 (376)
.+++++-+- +--|.....+++.+.+.|+|.+.+|.
T Consensus 62 ~~~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~ 97 (240)
T COG0284 62 GKKVFLDLKLADIPNTVALAAKAAADLGADAVTVHA 97 (240)
T ss_pred CCceEEeeecccchHHHHHHHHHhhhcCCcEEEEeC
Confidence 346777764 44477888888889999999999983
No 438
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=89.98 E-value=3.1 Score=38.49 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHCCCCEEEecCC--------------------------C--------------------CCccc-cCCCC
Q 017148 78 NLAKATELANAYNYDEINLNCG--------------------------C--------------------PSPKV-AGHGC 110 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g--------------------------c--------------------P~~~v-~r~g~ 110 (376)
+..++|.+++++|+|+|-+|.- . |-+.- .-+++
T Consensus 22 d~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTeg 101 (237)
T TIGR00559 22 DPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPEARDEVTTEG 101 (237)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCccCCc
Confidence 4567888899999999988752 1 11111 12444
Q ss_pred ccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCC
Q 017148 111 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI 190 (376)
Q Consensus 111 yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~ 190 (376)
|-.+..+.+.+.++++.+++. ++.|++-+-+ +.+. ++ ...+.|+|.|.+|.+.-... ..... .
T Consensus 102 -Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP------~~~q-i~----~A~~~GAd~VELhTG~YA~a-~~~~~---~ 164 (237)
T TIGR00559 102 -GLDVARLKDKLCELVKRFHAA-GIEVSLFIDA------DKDQ-IS----AAAEVGADRIEIHTGPYANA-YNKKE---M 164 (237)
T ss_pred -CchhhhCHHHHHHHHHHHHHC-CCEEEEEeCC------CHHH-HH----HHHHhCcCEEEEechhhhcC-CCchh---H
Confidence 667778889999999998753 6677664332 1222 22 23468999999997752111 00000 0
Q ss_pred CcccHHHHH---HHHhhCCCCeEEEecCCCCHHHHHHHHH-cC-cCeeEEchHHhhCCc
Q 017148 191 PPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALR-KG-AHHVMVGRAAYQNPW 244 (376)
Q Consensus 191 ~~~~~~~v~---~~~~~~~~ipVi~nGgI~s~~da~~~l~-~G-ad~VmiGRa~l~~P~ 244 (376)
. --++.+. +...+. ++-|=+--|+ +.+.+..+.. .+ .+=|-||.+++.+--
T Consensus 165 ~-~el~~i~~aa~~A~~l-GL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~Al 220 (237)
T TIGR00559 165 A-EELQRIVKASVHAHSL-GLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAIIADAV 220 (237)
T ss_pred H-HHHHHHHHHHHHHHHc-CCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHHHH
Confidence 0 0022222 222222 5656555566 7777777766 45 888999999887654
No 439
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=89.85 E-value=4 Score=38.30 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=66.1
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCC
Q 017148 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~ 191 (376)
|+..|++.+++.++ -..++||..|=-++ .+++|.+.. +...-..|-..|++--|.- +++ +.....
T Consensus 135 GARNMQNF~LLke~-----G~~~kPvLLKRg~~----aTieEwL~A-AEYI~s~GN~~vILCERGI--Rtf---e~~TRn 199 (286)
T COG2876 135 GARNMQNFALLKEV-----GRQNKPVLLKRGLS----ATIEEWLNA-AEYILSHGNGNVILCERGI--RTF---EKATRN 199 (286)
T ss_pred cccchhhhHHHHHh-----cccCCCeEEecCcc----ccHHHHHHH-HHHHHhCCCCcEEEEeccc--ccc---cccccc
Confidence 55666666665543 23578999985553 456666543 3333357777777754421 110 111222
Q ss_pred cccHHHHHHHHhhCCCCeEEEec----CCCCHH--HHHHHHHcCcCeeEEchHHhhCCchh
Q 017148 192 PLKYEYYYALLRDFPDLTFTLNG----GINTVD--EVNAALRKGAHHVMVGRAAYQNPWYT 246 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~nG----gI~s~~--da~~~l~~Gad~VmiGRa~l~~P~lf 246 (376)
.++...+..+++. .++|||++= |=++.- -+..+++.|||++|+= ..-||.-.
T Consensus 200 tLDi~aV~~~kq~-THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE--VHp~P~~A 257 (286)
T COG2876 200 TLDISAVPILKQE-THLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE--VHPDPEKA 257 (286)
T ss_pred eechHHHHHHHhh-cCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE--ecCCcccc
Confidence 3456666666554 599999862 222221 2445566899999983 44566643
No 440
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=89.73 E-value=13 Score=35.30 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=74.4
Q ss_pred HHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHH
Q 017148 80 AKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIY 159 (376)
Q Consensus 80 ~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~ 159 (376)
.+.++.++++|+|.|.++.- -.+.+.++-. + -.+.+...+.++.+++. ++++.+-+-+|..+ +.++..+.+.
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~---~~s~~~~~~ai~~l~~~-Gi~v~~~~i~Gl~e--t~~d~~~~~~ 194 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-S---THTYDDRVDTLENAKKA-GLKVCSGGIFGLGE--TVEDRIGLAL 194 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-C---CCCHHHHHHHHHHHHHc-CCEEEEeEEEeCCC--CHHHHHHHHH
Confidence 35567888999999877654 2221111111 1 13456666777776653 77777666666633 4445554433
Q ss_pred HHhhcCCccEEEEccCccccCCCCCCCCCCCCcccH-H---HHHHHHhhCCCCeEEEecCCC-CHHHHH-H-HHHcCcCe
Q 017148 160 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-E---YYYALLRDFPDLTFTLNGGIN-TVDEVN-A-ALRKGAHH 232 (376)
Q Consensus 160 ~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~-~---~v~~~~~~~~~ipVi~nGgI~-s~~da~-~-~l~~Gad~ 232 (376)
.+.+.|++.+.+|.-... .|+.-.+ .++... + .+...+...|+..|...|+=. ...+.. . ++..||+.
T Consensus 195 -~l~~l~~~~i~l~~l~p~-~gT~l~~---~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~ 269 (296)
T TIGR00433 195 -ALANLPPESVPINFLVKI-KGTPLAD---NKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANS 269 (296)
T ss_pred -HHHhCCCCEEEeeeeEEc-CCCccCC---CCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCce
Confidence 334678998877754332 1211011 122222 2 233333334544454444432 222332 2 56789999
Q ss_pred eEEc
Q 017148 233 VMVG 236 (376)
Q Consensus 233 VmiG 236 (376)
+++|
T Consensus 270 i~~g 273 (296)
T TIGR00433 270 IFVG 273 (296)
T ss_pred EEEc
Confidence 9974
No 441
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=89.70 E-value=15 Score=38.10 Aligned_cols=202 Identities=18% Similarity=0.223 Sum_probs=107.0
Q ss_pred ecCCcEEEccCCCCC-hHHHHHHHHHhCCCcEEEecce-----eecccccccchhhhhhccCCCCCCEEEEecCCCHHHH
Q 017148 6 YLPPWFSVAPMMDWT-DNHYRTLARLISKHAWLYTEML-----AAETIIYQQGNLDRFLAFSPEQHPIVLQIGGSNLDNL 79 (376)
Q Consensus 6 ~l~nri~lAPM~~~t-d~~~r~~~~~~Gg~gl~~te~v-----~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~~~~~ 79 (376)
.-..|+++|-|.-.| |..|...+.++| . +.|+. +.+-+.. .+.++...-+.++-+.++..=-||--+
T Consensus 32 tGr~PillaGMTPtTVdp~ivAAaAnAG-h---waELAGGGq~t~e~~~~---~i~ql~~~lepG~t~qfN~ifldpylw 104 (717)
T COG4981 32 TGRSPILLAGMTPTTVDPDIVAAAANAG-H---WAELAGGGQVTEEIFTN---AIEQLVSLLEPGRTAQFNSIFLDPYLW 104 (717)
T ss_pred cCCCCeeecCCCCCcCCHHHHHHHhcCC-c---eeeecCCcccCHHHHHH---HHHHHHhccCCCccceeeEEEechHHh
Confidence 445789999997543 667766655544 2 22322 1111111 223333333445444444332333211
Q ss_pred H------HHHHHHHHCC--CCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccH
Q 017148 80 A------KATELANAYN--YDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 80 ~------~aa~~~~~~G--~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~ 151 (376)
. +..+.+...| .|+|-|..|-|.. +...|+++.+-. .++|..+ +.+| ++
T Consensus 105 ~~qig~krLv~kara~G~~I~gvvIsAGIP~l----------------e~A~ElI~~L~~-~G~~yv~-fKPG-----tI 161 (717)
T COG4981 105 KLQIGGKRLVQKARASGAPIDGVVISAGIPSL----------------EEAVELIEELGD-DGFPYVA-FKPG-----TI 161 (717)
T ss_pred hhcCChHHHHHHHHhcCCCcceEEEecCCCcH----------------HHHHHHHHHHhh-cCceeEE-ecCC-----cH
Confidence 1 2233333445 5888888877753 445566666532 2555432 2333 22
Q ss_pred HHHHHHHHHHhhcCCccEEEEc--cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH--
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-- 227 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh--~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~-- 227 (376)
+.+ +.+-+++.+..---|++| |+.+ +|+ ..|+....+-+.-..+++ ...+|-++.-|||-+++++...|.
T Consensus 162 eqI-~svi~IAka~P~~pIilq~egGra--GGH--HSweDld~llL~tYs~lR-~~~NIvl~vGgGiGtp~~aa~YLTGe 235 (717)
T COG4981 162 EQI-RSVIRIAKANPTFPIILQWEGGRA--GGH--HSWEDLDDLLLATYSELR-SRDNIVLCVGGGIGTPDDAAPYLTGE 235 (717)
T ss_pred HHH-HHHHHHHhcCCCCceEEEEecCcc--CCc--cchhhcccHHHHHHHHHh-cCCCEEEEecCCcCChhhcccccccc
Confidence 222 222334444554455555 4432 332 223333333333334554 456899999999999999998884
Q ss_pred ----cC-----cCeeEEchHHhhCC
Q 017148 228 ----KG-----AHHVMVGRAAYQNP 243 (376)
Q Consensus 228 ----~G-----ad~VmiGRa~l~~P 243 (376)
.| .||+.+|++++..-
T Consensus 236 WSt~~g~P~MP~DGiLvGtaaMatK 260 (717)
T COG4981 236 WSTAYGFPPMPFDGILVGTAAMATK 260 (717)
T ss_pred hhhhcCCCCCCcceeEechhHHhhh
Confidence 12 89999999999653
No 442
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=89.63 E-value=11 Score=37.92 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=105.3
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.+...++.++ ...||++++= -|.+....+..-.++.....+ ..+++ .-..++|.+.. +++.+-++
T Consensus 148 p~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~~-~em~~ra~ 226 (407)
T TIGR03332 148 GMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTGRT-FDLKDKAK 226 (407)
T ss_pred CccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCCCH-HHHHHHHH
Confidence 56678888887765 4567888763 233222222111111111111 11223 33678888664 56999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc--ccCccEEEEecCCCCCC----c-cHHHHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDDH----D-SYNQLCDF 157 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~--~~~~pv~vKiR~g~~~~----~-~~~~~~~~ 157 (376)
+++++|..++-+|.. ..+|. .++.+++ ..++|+ .-.|.++.-. . -+. ....
T Consensus 227 ~a~~~G~~~~mv~~~--------~~G~~------------~~~~l~~~~~~~lpi-haHra~~ga~~r~~~~Gis-~~~~ 284 (407)
T TIGR03332 227 RAAELGADVLLFNVF--------AYGLD------------VLQSLAEDDEIPVPI-MAHPAVSGAYTSSPFYGFS-HSLL 284 (407)
T ss_pred HHHHhCCCEEEEecc--------ccChH------------HHHHHHhcCCCCcEE-EEecCcccccccCCCCccc-HHHH
Confidence 999999999988741 12222 2344444 345666 3334433211 0 111 0113
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC----CCeEEEecCCCCHHHHHHHHH-cCcCe
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP----DLTFTLNGGINTVDEVNAALR-KGAHH 232 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~----~ipVi~nGgI~s~~da~~~l~-~Gad~ 232 (376)
+.+++.-+|+|.+++.+-.....+. ..........+..... -.| +.+||+ ++..+.++++ .|-|.
T Consensus 285 l~kl~RLaGaD~~~~~~~~Gk~~~~--------~~~~~~~~~~~~~p~~~~k~~~P-v~sGG~-~~~~~p~~~~~~G~Dv 354 (407)
T TIGR03332 285 LGKLLRYAGADFSLFPSPYGSVALE--------REDALAISKELTEDDAPFKKTFA-VPSAGI-HPGMVPLIMRDFGIDH 354 (407)
T ss_pred HHHHHHhcCcCccccCCcccCCCCC--------HHHHHHHHHHHhccccCCCccEE-ecCCCc-ChhHHHHHHHHhCCce
Confidence 4566667899998875321111110 0000112222222111 134 456777 7888888888 89884
Q ss_pred -eEEchHHhhCCchh
Q 017148 233 -VMVGRAAYQNPWYT 246 (376)
Q Consensus 233 -VmiGRa~l~~P~lf 246 (376)
+++|-|+++.|+=.
T Consensus 355 il~~GGGi~gHP~G~ 369 (407)
T TIGR03332 355 IINAGGGIHGHPNGA 369 (407)
T ss_pred EEecCcccccCCCCc
Confidence 45789999999863
No 443
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=89.61 E-value=11 Score=38.05 Aligned_cols=196 Identities=13% Similarity=0.117 Sum_probs=107.9
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||++++= -|.+....+..-.+......+ ..+++ .-..++|.+. .+++.+-++
T Consensus 140 P~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~ 218 (412)
T cd08213 140 PKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANITAP-VREMERRAE 218 (412)
T ss_pred cccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEecCC-HHHHHHHHH
Confidence 76788999998876 4668888763 233332222221111111111 12223 3378898876 999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc---ccCccEEEEecCCCCC-------CccHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDD-------HDSYNQL 154 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~---~~~~pv~vKiR~g~~~-------~~~~~~~ 154 (376)
.+.++|.+.+-+|.. ..+|. .++.+++ ..++|+.. .|.++.- .-+.
T Consensus 219 ~a~e~G~~~~mv~~~--------~~G~~------------~l~~l~~~~~~~~l~iha-Hra~~ga~~r~~~~Gis~--- 274 (412)
T cd08213 219 LVADLGGKYVMIDVV--------VAGWS------------ALQYLRDLAEDYGLAIHA-HRAMHAAFTRNPRHGISM--- 274 (412)
T ss_pred HHHHhCCCeEEeecc--------ccChH------------HHHHHHHhccccCeEEEE-CCCcceecccCCcCcCcH---
Confidence 999999999888741 11222 2444444 33556544 2333211 1122
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--------------C---C-CCeEEEecCC
Q 017148 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------------F---P-DLTFTLNGGI 216 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--------------~---~-~ipVi~nGgI 216 (376)
..+.++..-+|+|.+++.+-.....+. . .-.......+... . . -.| +.+||+
T Consensus 275 -~~l~kl~RLaGaD~ih~~t~~Gk~~~~---~-----~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~P-v~sGG~ 344 (412)
T cd08213 275 -LVLAKLYRLIGVDQLHIGTAVGKMEGD---K-----EEVLRIADILREQKYKPDEEDFHLAQDWGGIKPVFP-VASGGL 344 (412)
T ss_pred -HHHHHHHHHcCCCccccCCccCCcCCC---H-----HHHHHHHHHHHhccccccchhccccCccccCCCceE-ecCCCC
Confidence 134666667999998775422111111 0 0001111122211 1 1 234 456776
Q ss_pred CCHHHHHHHHH-cCcCe-eEEchHHhhCCchh
Q 017148 217 NTVDEVNAALR-KGAHH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 217 ~s~~da~~~l~-~Gad~-VmiGRa~l~~P~lf 246 (376)
++..+.++++ .|-|. +++|-|+++.|+=.
T Consensus 345 -~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~ 375 (412)
T cd08213 345 -HPGLVPDVIDILGKDIVIQVGGGVHGHPDGT 375 (412)
T ss_pred -ChhHHHHHHHHhCCceEEecCCceecCCCCc
Confidence 7888888888 89884 56889999999863
No 444
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.54 E-value=9.5 Score=33.93 Aligned_cols=123 Identities=11% Similarity=0.100 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc-cCccEEEEecCCCCCCccH
Q 017148 73 GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSY 151 (376)
Q Consensus 73 g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~-~~~pv~vKiR~g~~~~~~~ 151 (376)
-.++++..+.++.+.+. ++.||++. |.. . .+| .+.++.+++. .+.|+.+-.... +...
T Consensus 9 ~~~~~~~~~~~~~l~~~-i~~ieig~--~~~--~---~~g----------~~~i~~i~~~~~~~~i~~~~~v~--~~~~- 67 (202)
T cd04726 9 LLDLEEALELAKKVPDG-VDIIEAGT--PLI--K---SEG----------MEAVRALREAFPDKIIVADLKTA--DAGA- 67 (202)
T ss_pred CCCHHHHHHHHHHhhhc-CCEEEcCC--HHH--H---HhC----------HHHHHHHHHHCCCCEEEEEEEec--cccH-
Confidence 34677888888888887 99999942 321 1 124 3566666664 467776632221 1111
Q ss_pred HHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe-cCCCCHHHHHHHHHcCc
Q 017148 152 NQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-GGINTVDEVNAALRKGA 230 (376)
Q Consensus 152 ~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n-GgI~s~~da~~~l~~Ga 230 (376)
..+ +.+.++|+|.|++|+.... ...+.+.+..++. +++++.. =+..|+.++.+++..|+
T Consensus 68 -~~~----~~~~~aGad~i~~h~~~~~--------------~~~~~~i~~~~~~-g~~~~v~~~~~~t~~e~~~~~~~~~ 127 (202)
T cd04726 68 -LEA----EMAFKAGADIVTVLGAAPL--------------STIKKAVKAAKKY-GKEVQVDLIGVEDPEKRAKLLKLGV 127 (202)
T ss_pred -HHH----HHHHhcCCCEEEEEeeCCH--------------HHHHHHHHHHHHc-CCeEEEEEeCCCCHHHHHHHHHCCC
Confidence 111 2234799999999985310 0012222333343 6777664 77889999988777899
Q ss_pred CeeEEc
Q 017148 231 HHVMVG 236 (376)
Q Consensus 231 d~VmiG 236 (376)
|.|.++
T Consensus 128 d~v~~~ 133 (202)
T cd04726 128 DIVILH 133 (202)
T ss_pred CEEEEc
Confidence 999985
No 445
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=89.52 E-value=17 Score=33.55 Aligned_cols=131 Identities=12% Similarity=0.043 Sum_probs=82.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 63 EQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 63 ~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
....+++.|.+.+.+++...++.+...|+|.||+=. |.+.. .+.+.+.++++.+++. +.|+.+-+|
T Consensus 19 ~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~Rl----------D~l~~---~~~~~~~~~~~~l~~~-~~p~I~T~R 84 (229)
T PRK01261 19 MQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRF----------DLFHD---HSIESEPEIISALNEM-DIDYIFTYR 84 (229)
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEe----------eccCC---CChHHHHHHHHHHhhc-CCCEEEEEc
Confidence 344578999999999999888888888999999943 33222 3455567777777654 789999889
Q ss_pred CCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHH
Q 017148 143 IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEV 222 (376)
Q Consensus 143 ~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da 222 (376)
.+ ++ .++ +..+++ .++|++.|--... . . + . .+. .++.||.+=--.+.++.
T Consensus 85 ~~-~~----~~~---l~~a~~-~~~d~vDIEl~~~--~---------------~-~-~-~~~-~~~kvIvS~Htp~~eeL 134 (229)
T PRK01261 85 GV-DA----RKY---YETAID-KMPPAVDLDINLI--G---------------K-L-E-FRP-RNTMLMVSYHTNNSDNM 134 (229)
T ss_pred CC-CH----HHH---HHHHHh-hCCCEEEEEcccc--h---------------h-h-h-hhc-CCCeEEEEeCCCCHHHH
Confidence 54 21 122 233443 6789998753210 0 0 0 0 111 25667776665566665
Q ss_pred HHHH----HcCcCeeEEch
Q 017148 223 NAAL----RKGAHHVMVGR 237 (376)
Q Consensus 223 ~~~l----~~Gad~VmiGR 237 (376)
.+.+ +.|||.+=++.
T Consensus 135 ~~~l~~m~~~gaDI~KiAv 153 (229)
T PRK01261 135 PAILDIMNEKNPDYVKVAC 153 (229)
T ss_pred HHHHHHHHHhCCCEEEEEe
Confidence 4444 25777666655
No 446
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=89.49 E-value=12 Score=33.85 Aligned_cols=127 Identities=18% Similarity=0.179 Sum_probs=67.2
Q ss_pred HHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC----CccHHHHHHH
Q 017148 82 ATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYNQLCDF 157 (376)
Q Consensus 82 aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~----~~~~~~~~~~ 157 (376)
.+..+++.|+|-|||+.+ . ..| | +--... .++.+++.+++|+-|=||+--.+ ..+++.+.+.
T Consensus 12 ~a~~A~~~GAdRiELc~~---l---~~G--G--lTPS~g----~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~d 77 (201)
T PF03932_consen 12 DALAAEAGGADRIELCSN---L---EVG--G--LTPSLG----LIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKED 77 (201)
T ss_dssp HHHHHHHTT-SEEEEEBT---G---GGT-----B---HH----HHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCC---c---cCC--C--cCcCHH----HHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHH
Confidence 456677899999999752 1 111 2 222233 44445556778988888873222 1345555555
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec---CCCCHHHHHHHHH-cCcCee
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG---GINTVDEVNAALR-KGAHHV 233 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG---gI~s~~da~~~l~-~Gad~V 233 (376)
+. .+.+.|+|.+.+-.=+. .| .++.+.+.++++...+.|+...= -+.++..+.+.+. .|++.|
T Consensus 78 I~-~~~~~GadG~VfG~L~~--dg----------~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 78 IR-MLRELGADGFVFGALTE--DG----------EIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRV 144 (201)
T ss_dssp HH-HHHHTT-SEEEE--BET--TS----------SB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEE
T ss_pred HH-HHHHcCCCeeEEEeECC--CC----------CcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEE
Confidence 54 34579999988643221 11 13456666666655578887653 3555666555553 788877
Q ss_pred EE
Q 017148 234 MV 235 (376)
Q Consensus 234 mi 235 (376)
.=
T Consensus 145 LT 146 (201)
T PF03932_consen 145 LT 146 (201)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 447
>PLN02535 glycolate oxidase
Probab=89.47 E-value=5 Score=39.78 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=36.2
Q ss_pred CcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 191 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 191 ~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
+.++|+.+..+++. .++|||+ .||.+++|+..+.+.|+|+|.+.
T Consensus 208 ~~~tW~~i~~lr~~-~~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 208 ASLSWKDIEWLRSI-TNLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CCCCHHHHHHHHhc-cCCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 45679988888775 4889665 67799999999999999999874
No 448
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=89.44 E-value=20 Score=35.85 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=107.3
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCCCC--CEEEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQH--PIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~~~--p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||++++= -|.+....+..-.++.....+ ..+++. -..++|.+. .+++.+-++
T Consensus 133 P~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~~-~~em~~ra~ 211 (391)
T cd08209 133 GVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTGP-VFTLKEKAR 211 (391)
T ss_pred cccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC-HHHHHHHHH
Confidence 76788999998876 4668888763 223322222211111111111 112233 368999875 799999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc--ccCccEEEEecCCCCC-------CccHHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDD-------HDSYNQLC 155 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~--~~~~pv~vKiR~g~~~-------~~~~~~~~ 155 (376)
++.++|.+++-+|. . . +|- ..++++++ ..++|+-. .|.++.- .-+..-
T Consensus 212 ~~~~~G~~~~mv~~---~-----~--~G~----------~~l~~l~~~~~~~lpIha-Hra~~ga~~~~~~~Gis~~~-- 268 (391)
T cd08209 212 RLVEAGANALLFNV---F-----A--YGL----------DVLEALASDPEINVPIFA-HPAFAGALYGSPDYGIAASV-- 268 (391)
T ss_pred HHHHhCCCEEEEec---c-----c--cch----------HHHHHHHhcCcCCcEEEe-cCCcccccccCCCCCCcHHH--
Confidence 99999999998874 1 1 231 22444444 34556543 2333221 011211
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--C-CCCeEEEecCCCCHHHHHHHHH-cCcC
Q 017148 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--F-PDLTFTLNGGINTVDEVNAALR-KGAH 231 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~-~~ipVi~nGgI~s~~da~~~l~-~Gad 231 (376)
.+.++..-+|+|.+++.+-.....+ .. .-.......+.+. . +-.|| .+||+ ++..+.+.++ .|-|
T Consensus 269 -~l~kl~RLaGaD~~~~~~~~Gk~~~---~~-----~~~~~~~~~~~~~~~~k~~~Pv-~sgG~-~~g~vp~~~~~~G~D 337 (391)
T cd08209 269 -LLGTLMRLAGADAVLFPSPYGSVAL---SK-----EEALAIAEALRRGGAFKGVFPV-PSAGI-HPGLVPQLLRDFGTD 337 (391)
T ss_pred -HHHHHHHHcCCCccccCCccCCcCC---CH-----HHHHHHHHHHhCcCCCCCceEe-cCCCC-ChhHHHHHHHHhCCc
Confidence 2356666689999887542111111 00 0001111122111 1 12443 45666 7888888888 8988
Q ss_pred e-eEEchHHhhCCchh
Q 017148 232 H-VMVGRAAYQNPWYT 246 (376)
Q Consensus 232 ~-VmiGRa~l~~P~lf 246 (376)
. +++|-|+++.|+=.
T Consensus 338 vi~~~GGGi~gHp~G~ 353 (391)
T cd08209 338 VILNAGGGIHGHPDGA 353 (391)
T ss_pred eEEecCcceecCCCCc
Confidence 4 45788999999863
No 449
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.40 E-value=5.4 Score=38.97 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCCCEEEEec-------CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017148 63 EQHPIVLQIG-------GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 63 ~~~p~~vQL~-------g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
.+-++.+=+. |.++++..+.++.++++|+|.|+++.|....... .+..-......+....+..+.+++.+++
T Consensus 215 ~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ik~~v~i 293 (338)
T cd04733 215 PGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAM-AGAKKESTIAREAYFLEFAEKIRKVTKT 293 (338)
T ss_pred CCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccc-cccccCCccccchhhHHHHHHHHHHcCC
Confidence 4456776664 5678888999999999999999999886432211 0000001112223345677788888899
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEE
Q 017148 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII 172 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~v 172 (376)
||.+--++ .+.++. .+++++.++|.|.+
T Consensus 294 PVi~~G~i-----~t~~~a----~~~l~~g~aD~V~l 321 (338)
T cd04733 294 PLMVTGGF-----RTRAAM----EQALASGAVDGIGL 321 (338)
T ss_pred CEEEeCCC-----CCHHHH----HHHHHcCCCCeeee
Confidence 99874333 223332 33455667887664
No 450
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=89.35 E-value=25 Score=35.18 Aligned_cols=128 Identities=14% Similarity=0.119 Sum_probs=76.7
Q ss_pred HHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccC-ccEEEEecCCCCCCccHHHHHHH
Q 017148 79 LAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDF 157 (376)
Q Consensus 79 ~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~-~pv~vKiR~g~~~~~~~~~~~~~ 157 (376)
....++.+.+.|.|.+-|= |+ +||++.+..-++++++.-. .-.++-..++. ..+++-..++
T Consensus 100 Ve~Fv~ka~~nGidvfRiF-----------DA-----lND~RNl~~ai~a~kk~G~h~q~~i~YT~sP--vHt~e~yv~~ 161 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIF-----------DA-----LNDVRNLKTAIKAAKKHGAHVQGTISYTTSP--VHTLEYYVEL 161 (472)
T ss_pred HHHHHHHHHhcCCcEEEec-----------hh-----ccchhHHHHHHHHHHhcCceeEEEEEeccCC--cccHHHHHHH
Confidence 3445677788898877551 32 6899999988888876421 12223223222 2344444443
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH---HHHHHHHHcCcCeeE
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV---DEVNAALRKGAHHVM 234 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~---~da~~~l~~Gad~Vm 234 (376)
++-+.+.|+|.|.+---.... .|...++.+..+++.+ ++||-.----.+. -...++++.|+|++=
T Consensus 162 -akel~~~g~DSIciKDmaGll----------tP~~ayelVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 162 -AKELLEMGVDSICIKDMAGLL----------TPYEAYELVKAIKKEL-PVPVELHTHATSGMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred -HHHHHHcCCCEEEeecccccC----------ChHHHHHHHHHHHHhc-CCeeEEecccccchHHHHHHHHHHhCcchhh
Confidence 334457999999986433211 1223488898888876 6998764333332 334566678999765
Q ss_pred Ec
Q 017148 235 VG 236 (376)
Q Consensus 235 iG 236 (376)
-+
T Consensus 230 TA 231 (472)
T COG5016 230 TA 231 (472)
T ss_pred hh
Confidence 43
No 451
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=89.23 E-value=2.1 Score=38.89 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc-ccCccEEEE
Q 017148 76 LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK 140 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~-~~~~pv~vK 140 (376)
.+...+.|+...+.|+|.||||+++-.+.. . ..+.....+.+..+++++++ ..++|+++-
T Consensus 18 ~~~a~~~a~~~~~~GAdiIDIg~~st~p~~----~-~v~~~eE~~rl~~~l~~i~~~~~~~plSID 78 (210)
T PF00809_consen 18 EDEAVKRAREQVEAGADIIDIGAESTRPGA----T-PVSEEEEMERLVPVLQAIREENPDVPLSID 78 (210)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEESSTSSTTS----S-SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEecccccCCCC----C-cCCHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 344555677777889999999987643321 1 22334566788888888886 568899984
No 452
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=89.17 E-value=20 Score=36.11 Aligned_cols=196 Identities=12% Similarity=0.131 Sum_probs=108.6
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCCCC--CEEEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQH--PIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~~~--p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..+++.++ ...||++++= -|.+....+..-.+......+ ..+.+. -..++|.+. ++++.+-++
T Consensus 152 P~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~ 230 (406)
T cd08207 152 PSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITDD-IDEMRRNHD 230 (406)
T ss_pred cccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-HHHHHHHHH
Confidence 76788999998876 4567888763 222222222221111111111 112233 368999886 999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC-------CccHHHHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-------HDSYNQLCDF 157 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~-------~~~~~~~~~~ 157 (376)
.+.++|.+++-+|.. ..+|. .++.+++..++|+.. .|.++.- .-+. ..
T Consensus 231 ~~~~~G~~~~mv~~~--------~~G~~------------~l~~l~~~~~l~Iha-Hra~~ga~~r~p~~Gis~----~v 285 (406)
T cd08207 231 LVVEAGGTCVMVSLN--------SVGLS------------GLAALRRHSQLPIHG-HRNGWGMLTRSPALGISF----QA 285 (406)
T ss_pred HHHHhCCCeEEEecc--------ccchH------------HHHHHHhcCCceEEE-CCCcceecccCCCCCCcH----HH
Confidence 999999999988752 12222 244555555667654 2333211 1122 12
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC----C-CCeEEEecCCCCHHHHHHHHH-cC-c
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----P-DLTFTLNGGINTVDEVNAALR-KG-A 230 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~----~-~ipVi~nGgI~s~~da~~~l~-~G-a 230 (376)
+.++..-+|+|.+++.+-.. .+...+ .-.......+.... . -.| +.+||+ ++..+.+.++ .| .
T Consensus 286 l~kl~RLaGaD~~~~~~~~G---kf~~~~-----~~~~~~~~~~~~p~~~~~k~~~P-v~sgG~-~~~~vp~~~~~~G~~ 355 (406)
T cd08207 286 YQKLWRLAGVDHLHVNGLAS---KFWESD-----DSVIESARACLTPLGGPDDAAMP-VFSSGQ-WGGQAPPTYRRLGSV 355 (406)
T ss_pred HHHHHHHcCCCccccCCCcC---CcCCCc-----HHHHHHHHHHhCchhccCCCeeE-eccCCC-CHhHHHHHHHHhCCC
Confidence 45666678999988754211 010000 00011112222211 1 234 355666 7888888887 88 5
Q ss_pred CeeE-EchHHhhCCchh
Q 017148 231 HHVM-VGRAAYQNPWYT 246 (376)
Q Consensus 231 d~Vm-iGRa~l~~P~lf 246 (376)
|.|. +|-|+++.|+=.
T Consensus 356 Dvi~~aGGGi~gHP~G~ 372 (406)
T cd08207 356 DLLYLAGGGIMAHPDGP 372 (406)
T ss_pred ceEEecCCceecCCCCc
Confidence 8665 499999999864
No 453
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=89.15 E-value=1.1 Score=43.80 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=59.5
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+++.+++.|+++|.|-.-....+|. ++.+.++++..+++||+---=|.++-++.++...|||+|.+==
T Consensus 144 iA~~Ye~~GA~aISVLTd~~~F~Gs------------~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIa 211 (338)
T PLN02460 144 IAQAYEKGGAACLSVLTDEKYFQGS------------FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIA 211 (338)
T ss_pred HHHHHHhCCCcEEEEecCcCcCCCC------------HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHH
Confidence 3566788999999987655444442 6778777765359999999999999999999999999998876
Q ss_pred HHhhCCch
Q 017148 238 AAYQNPWY 245 (376)
Q Consensus 238 a~l~~P~l 245 (376)
++|.+-.+
T Consensus 212 aiL~~~~L 219 (338)
T PLN02460 212 AVLPDLDI 219 (338)
T ss_pred HhCCHHHH
Confidence 66655444
No 454
>PRK07094 biotin synthase; Provisional
Probab=89.01 E-value=6.3 Score=38.09 Aligned_cols=139 Identities=14% Similarity=0.052 Sum_probs=71.7
Q ss_pred HHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHH
Q 017148 81 KATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYK 160 (376)
Q Consensus 81 ~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~ 160 (376)
+.++.++++|+|.+.+++-...+.+.+. ++. -...+...+.++.+++. ++++..-+-+|... ++.++..+.+.
T Consensus 130 e~l~~Lk~aG~~~v~~glEs~~~~~~~~--i~~--~~s~~~~~~~i~~l~~~-Gi~v~~~~iiGlpg-et~ed~~~~l~- 202 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRHETADKELYAK--LHP--GMSFENRIACLKDLKEL-GYEVGSGFMVGLPG-QTLEDLADDIL- 202 (323)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHH--hCC--CCCHHHHHHHHHHHHHc-CCeecceEEEECCC-CCHHHHHHHHH-
Confidence 3456778899999988876554332211 111 13455666667766653 66666666666533 33344443322
Q ss_pred HhhcCCccEEEEc-----cCccccCCCCCCCCCCCCccc----HHHHHHHHhhCCC--CeEEEecCCCCHHHHHHHHHcC
Q 017148 161 VSSLSPTRHFIIH-----SRKALLNGISPAENRTIPPLK----YEYYYALLRDFPD--LTFTLNGGINTVDEVNAALRKG 229 (376)
Q Consensus 161 ~~e~~Gvd~I~vh-----~r~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~~--ipVi~nGgI~s~~da~~~l~~G 229 (376)
.+.+.+++.+.++ .+|..+.- ++.. +..++..+.-.++ |+..+.=+-..+.....++..|
T Consensus 203 ~l~~l~~~~v~~~~~~P~pgTpl~~~---------~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~~~~~l~~G 273 (323)
T PRK07094 203 FLKELDLDMIGIGPFIPHPDTPLKDE---------KGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDGREKGLKAG 273 (323)
T ss_pred HHHhCCCCeeeeeccccCCCCCcccC---------CCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchhHHHHHHcC
Confidence 3345777776664 34433211 1111 1222222222344 5554321223344556778899
Q ss_pred cCeeEE
Q 017148 230 AHHVMV 235 (376)
Q Consensus 230 ad~Vmi 235 (376)
|+.+|.
T Consensus 274 an~~~~ 279 (323)
T PRK07094 274 ANVVMP 279 (323)
T ss_pred CceecC
Confidence 999985
No 455
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.00 E-value=14 Score=35.31 Aligned_cols=147 Identities=10% Similarity=0.064 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHCCCCEEEecCC-------CCCccccCCCCccccccCC-------HHHHHHHHHHHhcc---cCccEEEE
Q 017148 78 NLAKATELANAYNYDEINLNCG-------CPSPKVAGHGCFGVSLMLD-------PKFVGEAMSVIAAN---TNVPVSVK 140 (376)
Q Consensus 78 ~~~~aa~~~~~~G~d~IeiN~g-------cP~~~v~r~g~yG~~l~~~-------~~~~~eiv~~v~~~---~~~pv~vK 140 (376)
...+..+.+.+.|+-+|++..= -|.+...+. ..+++|. .+...+-++..++. .+.|+.+-
T Consensus 21 ~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~---~~~~~N~~G~~n~g~~~~~~~i~~~~~~~~~~~~pvivs 97 (294)
T cd04741 21 TTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAF---PLGSINSLGLPNLGLDYYLEYIRTISDGLPGSAKPFFIS 97 (294)
T ss_pred CCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEec---CccccccccCCCcCHHHHHHHHHHHhhhccccCCeEEEE
Confidence 3445566666789999988543 232222222 1223333 45555555555443 46788876
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcC--CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEE--ec--
Q 017148 141 CRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NG-- 214 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~--Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~--nG-- 214 (376)
+--. .++.++.+.++.+.. |+|+|.+.-.-....+... ....+....+.+..+++. .++||++ .-
T Consensus 98 i~g~------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~--~~~~~~~~~~i~~~v~~~-~~iPv~vKl~p~~ 168 (294)
T cd04741 98 VTGS------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPP--PAYDFDATLEYLTAVKAA-YSIPVGVKTPPYT 168 (294)
T ss_pred CCCC------HHHHHHHHHHHHhhccccccEEEEECCCCCCCCccc--ccCCHHHHHHHHHHHHHh-cCCCEEEEeCCCC
Confidence 6422 234444444443333 7999998543322111110 000011112344444443 4788864 12
Q ss_pred CCCCHHHHHHHHH-c--CcCeeEEc
Q 017148 215 GINTVDEVNAALR-K--GAHHVMVG 236 (376)
Q Consensus 215 gI~s~~da~~~l~-~--Gad~VmiG 236 (376)
++.+..++.+.+. . |+|+|.+-
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEE
Confidence 2222333334343 5 89988863
No 456
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=88.99 E-value=23 Score=35.70 Aligned_cols=197 Identities=12% Similarity=0.055 Sum_probs=106.6
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc-----cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA-----FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~-----~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||++++= -|.+....+..-.+......+ ..+++ .-..++|.+. .+++.+-++
T Consensus 143 P~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~ 221 (407)
T PRK09549 143 GVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTGR-TFELKEKAK 221 (407)
T ss_pred CccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-HHHHHHHHH
Confidence 66788999998876 4668888763 223332222221111111111 11222 3467888876 578999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc--ccCccEEEEecCCCCC-------CccHHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA--NTNVPVSVKCRIGVDD-------HDSYNQLC 155 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~--~~~~pv~vKiR~g~~~-------~~~~~~~~ 155 (376)
.+.++|...+-+|. . .. |- ..++.+++ ..++|+.. .|.++.- .-+..-
T Consensus 222 ~a~~~G~~~~m~~~---~-----~~--G~----------~al~~l~~~~~~~lpIha-Hra~~ga~~r~~~~Gis~~~-- 278 (407)
T PRK09549 222 RAAEAGADALLFNV---F-----AY--GL----------DVLQSLAEDPEIPVPIMA-HPAVSGAYTPSPLYGISSPL-- 278 (407)
T ss_pred HHHHcCCCeEEEec---c-----cc--ch----------HHHHHHHhcCCCCcEEEe-cCCcccccccCCCCcCcHHH--
Confidence 99999999998874 1 12 31 12344444 33556543 2332211 111211
Q ss_pred HHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC---CC-CeEEEecCCCCHHHHHHHHH-cCc
Q 017148 156 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF---PD-LTFTLNGGINTVDEVNAALR-KGA 230 (376)
Q Consensus 156 ~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~---~~-ipVi~nGgI~s~~da~~~l~-~Ga 230 (376)
.+.++..-+|+|.+++.+-.....+. ..........+.+.. .. .| +.+||+ ++..+.++++ .|-
T Consensus 279 -~l~kl~RLaGaD~~~~~~~~Gk~~~~--------~~~~~~~~~~~~~~~~~~k~~~P-v~sGG~-~~~~~p~~~~~~G~ 347 (407)
T PRK09549 279 -LLGKLLRYAGADFSLFPSPYGSVALE--------KEEALAIAKELTEDDDPFKRSFP-VPSAGI-HPGLVPLLIRDFGK 347 (407)
T ss_pred -HHHHHHHHcCCCccccCCCcCCcCCC--------HHHHHHHHHHHhccccCCCccEE-eecCCC-ChhHHHHHHHHhCC
Confidence 24556666899998765321111110 000012222222221 11 34 456777 7788888888 898
Q ss_pred Ce-eEEchHHhhCCchh
Q 017148 231 HH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 231 d~-VmiGRa~l~~P~lf 246 (376)
|. +++|-|+++.|+=.
T Consensus 348 D~il~~GGgi~gHp~G~ 364 (407)
T PRK09549 348 DVVINAGGGIHGHPNGA 364 (407)
T ss_pred ceEEecCCceecCCCCc
Confidence 84 45899999999864
No 457
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=88.96 E-value=1.3 Score=41.77 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=68.0
Q ss_pred CCCCccccccCCH--HHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCC
Q 017148 107 GHGCFGVSLMLDP--KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS 183 (376)
Q Consensus 107 r~g~yG~~l~~~~--~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~ 183 (376)
|-+-+-+-|.+|- ..+..+-++|++.- ..|.+.|+-.-. ++++++.+. + ++|+|.|-+...+.
T Consensus 154 R~gLsDavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEv---esle~~~eA----l-~agaDiImLDNm~~------ 219 (280)
T COG0157 154 RFGLSDAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEV---ESLEEAEEA----L-EAGADIIMLDNMSP------ 219 (280)
T ss_pred cCCCcceEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEc---CCHHHHHHH----H-HcCCCEEEecCCCH------
Confidence 4344344444433 33444444444332 245556655533 345554432 2 59999998876542
Q ss_pred CCCCCCCCcccHHHHHHHHh---hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCch
Q 017148 184 PAENRTIPPLKYEYYYALLR---DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 184 ~~~~~~~~~~~~~~v~~~~~---~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
+.+++.++ ...++-+=++||| +.+.+.+...+|+|.+.+|.--..-||+
T Consensus 220 ------------e~~~~av~~l~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galths~~~l 271 (280)
T COG0157 220 ------------EELKEAVKLLGLAGRALLEASGGI-TLENIREYAETGVDVISVGALTHSAPAL 271 (280)
T ss_pred ------------HHHHHHHHHhccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccccCCccc
Confidence 22222222 2235667799999 8999999999999999999887777875
No 458
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=88.73 E-value=2 Score=40.97 Aligned_cols=61 Identities=23% Similarity=0.168 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+++...+-|+...+.|+|.|||++-+-.+ |.=.-+.....+.+..+|+++++..++|++|-
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-----g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISID 96 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRP-----GAAEVSVEEELDRVIPVVEAIAQRFEVWISVD 96 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 56666666777777899999998643221 11011122344567778888887778888773
No 459
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=88.51 E-value=14 Score=33.61 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=73.4
Q ss_pred EEEecCCC-HHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCC
Q 017148 68 VLQIGGSN-LDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD 146 (376)
Q Consensus 68 ~vQL~g~~-~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~ 146 (376)
.++++|-. ++ -|+.+.++|+|.+=+.+..+++. | =+++.+.+|.+.+...+ .+|.|-..
T Consensus 4 ~vKICGi~~~e----da~~~~~~Gad~iGfI~~~~S~R------~-----V~~~~a~~i~~~~~~~i-~~VgVf~~---- 63 (210)
T PRK01222 4 RVKICGITTPE----DAEAAAELGADAIGFVFYPKSPR------Y-----VSPEQAAELAAALPPFV-KVVGVFVN---- 63 (210)
T ss_pred eEEECCCCcHH----HHHHHHHcCCCEEEEccCCCCCC------c-----CCHHHHHHHHHhCCCCC-CEEEEEeC----
Confidence 47888854 43 35566678999988865433321 1 24677888877765322 24444211
Q ss_pred CCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHH
Q 017148 147 DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL 226 (376)
Q Consensus 147 ~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l 226 (376)
.+.+++ .+++++.+.|.|.+||-.. .+.+..+++.. +++||-.=.+.+..+...+.
T Consensus 64 --~~~~~i----~~~~~~~~~d~vQLHg~e~-----------------~~~~~~l~~~~-~~~iik~i~v~~~~~l~~~~ 119 (210)
T PRK01222 64 --ASDEEI----DEIVETVPLDLLQLHGDET-----------------PEFCRQLKRRY-GLPVIKALRVRSAGDLEAAA 119 (210)
T ss_pred --CCHHHH----HHHHHhcCCCEEEECCCCC-----------------HHHHHHHHhhc-CCcEEEEEecCCHHHHHHHH
Confidence 233333 3345689999999998421 23445555443 57777666666655555544
Q ss_pred H--cCcCeeEEc
Q 017148 227 R--KGAHHVMVG 236 (376)
Q Consensus 227 ~--~Gad~VmiG 236 (376)
+ ..||.+++=
T Consensus 120 ~~~~~~d~~L~D 131 (210)
T PRK01222 120 AYYGDADGLLLD 131 (210)
T ss_pred hhhccCCEEEEc
Confidence 4 357877764
No 460
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=88.51 E-value=19 Score=35.72 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=107.0
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhh----c-cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFL----A-FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~----~-~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|+.|.|..++..+| ...||++++= -|.+....+..-.+...... + ..+.+ .-..++|.+.. +++.+-++
T Consensus 136 P~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~-~em~~ra~ 214 (366)
T cd08148 136 PKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNVTAGT-FEIIERAE 214 (366)
T ss_pred cccCCCHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEccCCH-HHHHHHHH
Confidence 88999999999887 4668888763 22222222221111111111 1 11222 23688998765 89999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc--cCccEEEEecCCCCCC----c-cHHHHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--TNVPVSVKCRIGVDDH----D-SYNQLCDF 157 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~--~~~pv~vKiR~g~~~~----~-~~~~~~~~ 157 (376)
.+.++|..++-+|.. ..+|. .++++++. .++|+-. .|.++.-. . -+.- ..
T Consensus 215 ~~~~~G~~~~mv~~~--------~~G~~------------~l~~l~~~~~~~l~Iha-HrA~~ga~~~~~~~G~~~--~~ 271 (366)
T cd08148 215 RALELGANMLMVDVL--------TAGFS------------ALQALAEDFEIDLPIHV-HRAMHGAVTRSKFHGISM--LV 271 (366)
T ss_pred HHHHhCCCEEEEecc--------ccchH------------HHHHHHHhCcCCcEEEe-ccccccccccCCCCCcCH--HH
Confidence 999999999988741 12222 24444442 3555543 23332110 0 0111 23
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC----CCCeEEEecCCCCHHHHHHHHH-cCcCe
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALR-KGAHH 232 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~----~~ipVi~nGgI~s~~da~~~l~-~Gad~ 232 (376)
+.++..-+|+|.+++.+-.....+ .. .........+.+.. +-.| +.+||+ ++..+.++++ .|-|.
T Consensus 272 l~kl~RLaGaD~~~~~t~~Gk~~~---~~-----~~~~~~~~~~~~~~~~~k~~~P-v~sgG~-~~~~vp~~~~~~G~Dv 341 (366)
T cd08148 272 LAKLLRMAGGDFIHTGTVVGKMAL---ER-----EEALGIADALTDDWAGFKRVFP-VASGGI-HPGLVPGILRDFGIDV 341 (366)
T ss_pred HHHHHHHcCCCccccCCcccCcCC---CH-----HHHHHHHHHHhCcccCCCCceE-eccCCC-ChhHHHHHHHHhCCcE
Confidence 456666789999876532111111 00 00011112222211 1234 345666 7888888888 89884
Q ss_pred -eEEchHHhhCCchh
Q 017148 233 -VMVGRAAYQNPWYT 246 (376)
Q Consensus 233 -VmiGRa~l~~P~lf 246 (376)
+++|-|+++.|+=.
T Consensus 342 il~~GGgi~gHp~G~ 356 (366)
T cd08148 342 ILQAGGGIHGHPDGT 356 (366)
T ss_pred EEEcCccccCCCCCh
Confidence 45788999999853
No 461
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=88.37 E-value=12 Score=37.75 Aligned_cols=144 Identities=19% Similarity=0.137 Sum_probs=87.5
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEE--ecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017148 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEIN--LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~Ie--iN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.++|++.-+. |-+|+.+++.+..+...|.|.|- =|+..|. =+-+.+|.+.+.+.++...+.++..
T Consensus 141 ~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~~~~~a~~~a~~eTG~~ 211 (406)
T cd08207 141 EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPP---------YSPLDERVRAVMRVINDHAQRTGRK 211 (406)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC---------CCcHHHHHHHHHHHHHHHHHhhCCc
Confidence 5788888875 66899999999998888988872 2232221 1122345566666666666667654
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE----E
Q 017148 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT----L 212 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi----~ 212 (376)
...-.. +.. +.+++.+... .+.+.|+.++.+..-.. | +..+..+++. .++||. +
T Consensus 212 ~~y~~N--iT~--~~~em~~ra~-~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~-~~l~IhaHra~ 269 (406)
T cd08207 212 VMYAFN--ITD--DIDEMRRNHD-LVVEAGGTCVMVSLNSV---G-------------LSGLAALRRH-SQLPIHGHRNG 269 (406)
T ss_pred ceEEEe--cCC--CHHHHHHHHH-HHHHhCCCeEEEecccc---c-------------hHHHHHHHhc-CCceEEECCCc
Confidence 332222 222 2556655433 34568998888765431 2 4556666664 588887 3
Q ss_pred ec--------CCCCHHHHHHHHH-cCcCeeEEchH
Q 017148 213 NG--------GINTVDEVNAALR-KGAHHVMVGRA 238 (376)
Q Consensus 213 nG--------gI~s~~da~~~l~-~Gad~VmiGRa 238 (376)
.| ||.. .-..++.+ .|+|.+.++.-
T Consensus 270 ~ga~~r~p~~Gis~-~vl~kl~RLaGaD~~~~~~~ 303 (406)
T cd08207 270 WGMLTRSPALGISF-QAYQKLWRLAGVDHLHVNGL 303 (406)
T ss_pred ceecccCCCCCCcH-HHHHHHHHHcCCCccccCCC
Confidence 44 3333 23455556 89999998763
No 462
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.31 E-value=6.2 Score=35.18 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=56.1
Q ss_pred HHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh
Q 017148 124 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 203 (376)
Q Consensus 124 eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 203 (376)
++++.+.+. ++..=+|. .+.++..+.+..++ +.|++.|.+.-++.. ..+.+..+.+
T Consensus 4 ~~~~~l~~~---~~~~v~r~-----~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~---------------~~e~~~~~~~ 59 (187)
T PRK07455 4 DWLAQLQQH---RAIAVIRA-----PDLELGLQMAEAVA-AGGMRLIEITWNSDQ---------------PAELISQLRE 59 (187)
T ss_pred HHHHHHHhC---CEEEEEEc-----CCHHHHHHHHHHHH-HCCCCEEEEeCCCCC---------------HHHHHHHHHH
Confidence 445555443 44444564 23344444444444 689999988755421 1344555544
Q ss_pred hCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017148 204 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 204 ~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
.. ..-.++.|-+.+.+++..+++.|||+|+++-
T Consensus 60 ~~-~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 60 KL-PECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred hC-CCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 43 3445788999999999999999999997765
No 463
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=88.16 E-value=16 Score=36.35 Aligned_cols=200 Identities=15% Similarity=0.165 Sum_probs=105.0
Q ss_pred cEEEc---cCCCCChHHHHHHHH--HhCCCcEEE-ecceeecccccccchhhh---hhccCC----CCCCEEEEecCCCH
Q 017148 10 WFSVA---PMMDWTDNHYRTLAR--LISKHAWLY-TEMLAAETIIYQQGNLDR---FLAFSP----EQHPIVLQIGGSNL 76 (376)
Q Consensus 10 ri~lA---PM~~~td~~~r~~~~--~~Gg~gl~~-te~v~~~~~~~~~~~~~~---~~~~~~----~~~p~~vQL~g~~~ 76 (376)
|++.. |..+.+...++.++. ..||++.+. -|.+.........++... -++... ...+++.++.+. .
T Consensus 131 Pli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~-~ 209 (367)
T cd08205 131 PLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGD-P 209 (367)
T ss_pred CeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCC-H
Confidence 45555 445788888988763 446777764 333333333222222111 111111 234567888766 4
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC----CccHH
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD----HDSYN 152 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~----~~~~~ 152 (376)
+++.+-|+.++++|.|++-++.- . ||-.. ++.+++..++|+..- |.++.- ....-
T Consensus 210 ~e~i~~a~~a~~~Gad~vmv~~~--~--------~g~~~----------~~~l~~~~~lpi~~H-~a~~ga~~~~~~~g~ 268 (367)
T cd08205 210 DELRRRADRAVEAGANALLINPN--L--------VGLDA----------LRALAEDPDLPIMAH-PAFAGALSRSPDYGS 268 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc--c--------ccccH----------HHHHHhcCCCeEEEc-cCcccccccCCCCcC
Confidence 89999999999999999999741 1 23111 122222335565442 222110 00000
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHh----hCC----CCeEEEecCCCCHHHHHH
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR----DFP----DLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~----~~~----~ipVi~nGgI~s~~da~~ 224 (376)
. ...+.++..-+|+|.+++.+-.. ++.. .-+.+.++.+ ... ..|+. +||+ ++..+.+
T Consensus 269 ~-~~~~~kl~RlaGad~~~~~~~~g---k~~~---------~~~~~~~la~~~~~~~~~iK~~~Pv~-sgG~-~~~~v~~ 333 (367)
T cd08205 269 H-FLLLGKLMRLAGADAVIFPGPGG---RFPF---------SREECLAIARACRRPLGGIKPALPVP-SGGM-HPGRVPE 333 (367)
T ss_pred C-HHHHHHHHHHcCCCccccCCCcc---CcCC---------CHHHHHHHHHHHhCccccCCCceeec-cCCC-CHHHHHH
Confidence 0 12345666779999987653211 1100 0122223322 211 23433 4555 5678888
Q ss_pred HHH-cCcCe-eEEchHHhhCCchh
Q 017148 225 ALR-KGAHH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 225 ~l~-~Gad~-VmiGRa~l~~P~lf 246 (376)
+++ .|.|. +++|-++++.|+=.
T Consensus 334 l~~~~G~dv~~~~GGgi~gHp~g~ 357 (367)
T cd08205 334 LYRDYGPDVILLAGGGILGHPDGA 357 (367)
T ss_pred HHHHhCCcEEEEcCchhcCCCCCh
Confidence 887 78884 56788999999853
No 464
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=88.14 E-value=2.7 Score=40.59 Aligned_cols=71 Identities=8% Similarity=0.052 Sum_probs=45.9
Q ss_pred CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCC
Q 017148 165 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 165 ~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P 243 (376)
+|+|.|-+..... ++.+ ... ..+.+.+.++.. ...|+-++||| +.+.+.+..++|+|.+.+|.--..-|
T Consensus 228 agaDiImLDnm~~-----~~~~---~~~-~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galthsa~ 297 (308)
T PLN02716 228 TSLTRVMLDNMVV-----PLEN---GDV-DVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQTGVTYISSGALTHSVK 297 (308)
T ss_pred CCCCEEEeCCCcc-----cccc---cCC-CHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHHcCCCEEEeCccccCCC
Confidence 8999998876511 0000 000 133344443322 25789999999 78999999899999999998555445
Q ss_pred ch
Q 017148 244 WY 245 (376)
Q Consensus 244 ~l 245 (376)
++
T Consensus 298 ~~ 299 (308)
T PLN02716 298 AL 299 (308)
T ss_pred cc
Confidence 53
No 465
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=88.12 E-value=5.3 Score=35.98 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=38.4
Q ss_pred HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhh
Q 017148 195 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 241 (376)
Q Consensus 195 ~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~ 241 (376)
++.+..+... ..-||+..|||.-.+|.+.+...|+++|.+||++..
T Consensus 170 ~E~l~~~~~~-s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~ 215 (229)
T COG1411 170 YELLTKVLEL-SEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE 215 (229)
T ss_pred HHHHHHHHHh-ccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc
Confidence 6666665543 367999999999999999998899999999999864
No 466
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=88.04 E-value=25 Score=33.52 Aligned_cols=156 Identities=15% Similarity=0.067 Sum_probs=91.9
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|+++++.. +..+..+.++.++++|+|++-+- .|.. - ....+.+.+-.++|.+.+++|+.+-
T Consensus 66 ~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~--pP~y--------~---~~~~~~i~~~f~~v~~~~~~pi~lY 131 (289)
T cd00951 66 TAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLL--PPYL--------T---EAPQEGLYAHVEAVCKSTDLGVIVY 131 (289)
T ss_pred hCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEEC--CCCC--------C---CCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3456799999976 78888899999999999999882 2321 1 0235678888888888889999987
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcC-CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCH
Q 017148 141 CRIGVDDHDSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV 219 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~-Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~ 219 (376)
-+.|.+- +. ++ +.++.++. .+-.|--..+ ++..+.++++...+--.+.+|. .+.
T Consensus 132 n~~g~~l--~~-~~---l~~L~~~~pnivgiKds~~------------------d~~~~~~~~~~~~~~~~v~~G~-~~~ 186 (289)
T cd00951 132 NRANAVL--TA-DS---LARLAERCPNLVGFKDGVG------------------DIELMRRIVAKLGDRLLYLGGL-PTA 186 (289)
T ss_pred eCCCCCC--CH-HH---HHHHHhcCCCEEEEEeCCC------------------CHHHHHHHHHhcCCCeEEEeCC-Ccc
Confidence 6665432 22 22 23333322 2322221111 1344445544433212344453 222
Q ss_pred HH-HHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017148 220 DE-VNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 220 ~d-a~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
+. +...+..||+|++.|-+-+ -|.++.+.++....|
T Consensus 187 d~~~~~~l~~Ga~G~is~~~n~-~P~~~~~l~~~~~~g 223 (289)
T cd00951 187 EVFALAYLAMGVPTYSSAVFNF-VPEIALAFYAAVRAG 223 (289)
T ss_pred hHhHHHHHHCCCCEEEechhhh-hHHHHHHHHHHHHcC
Confidence 22 4566668999998877644 477765544443344
No 467
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.85 E-value=26 Score=33.60 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=90.4
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 61 SPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 61 ~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.....|+++++.+ +.++..+.++.++++|+|++-+- -|.. .+ ...+.+.+-.+++.+.+++||.+-
T Consensus 73 ~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~--pP~y--~~---------~~~~~i~~~f~~va~~~~lpi~lY 138 (303)
T PRK03620 73 TAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLL--PPYL--TE---------APQEGLAAHVEAVCKSTDLGVIVY 138 (303)
T ss_pred hCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEEC--CCCC--CC---------CCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4556799999975 88889999999999999999883 2321 11 135678888888888889999887
Q ss_pred ecCCCCCCccHHHHHHHHHHHhhcC-CccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCC
Q 017148 141 CRIGVDDHDSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINT 218 (376)
Q Consensus 141 iR~g~~~~~~~~~~~~~i~~~~e~~-Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s 218 (376)
-+.|.+- +.+ + +.++.++. .+..|--+.+ +...+.++++... +. .+.+|.=.+
T Consensus 139 n~~g~~l--~~~-~---l~~L~~~~pni~giK~s~~------------------d~~~~~~~~~~~~~~f-~vl~G~d~~ 193 (303)
T PRK03620 139 NRDNAVL--TAD-T---LARLAERCPNLVGFKDGVG------------------DIELMQRIVRALGDRL-LYLGGLPTA 193 (303)
T ss_pred cCCCCCC--CHH-H---HHHHHhhCCCEEEEEeCCC------------------CHHHHHHHHHHcCCCe-EEEeCCCcc
Confidence 6665432 222 2 23343222 3333332211 1334445544433 33 344553111
Q ss_pred HHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017148 219 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 219 ~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
-..+..++..|++|...|-+-+ .|.++.+.++....|
T Consensus 194 e~~~~~~~~~G~~G~is~~an~-~P~~~~~l~~~~~~g 230 (303)
T PRK03620 194 EVFAAAYLALGVPTYSSAVFNF-VPEIALAFYRALRAG 230 (303)
T ss_pred hhhHHHHHhCCCCEEEecHHhh-hHHHHHHHHHHHHCC
Confidence 1223344557999998876643 366654444443344
No 468
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=87.81 E-value=7.9 Score=35.35 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=61.0
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCC
Q 017148 69 LQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH 148 (376)
Q Consensus 69 vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~ 148 (376)
+.|.+.+.+++.+.++.+...|+|.||+-..+ +.. ...+.+.+.+..+++.+++|+.+-+|.-++..
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~----------l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG 68 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDY----------LEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG 68 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGG----------STT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEecc----------ccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence 56788999999888888888799999996532 111 45678888899998888999998888632211
Q ss_pred ---ccHHHHHHHHHHHhhcCCccEEEEccC
Q 017148 149 ---DSYNQLCDFIYKVSSLSPTRHFIIHSR 175 (376)
Q Consensus 149 ---~~~~~~~~~i~~~~e~~Gvd~I~vh~r 175 (376)
.+-++-.+++..++ +.|+++|.|--.
T Consensus 69 ~~~~~~~~~~~ll~~~~-~~~~d~iDiE~~ 97 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAI-RLGPDYIDIELD 97 (224)
T ss_dssp SBSS-HHHHHHHHHHHH-HHTSSEEEEEGG
T ss_pred CCcCCHHHHHHHHHHHH-HcCCCEEEEEcc
Confidence 11223334444444 466999999654
No 469
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=87.79 E-value=19 Score=35.78 Aligned_cols=144 Identities=16% Similarity=0.078 Sum_probs=83.5
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc--c
Q 017148 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV--P 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~--p 136 (376)
.++|++.-++ |-+++.+++.+..+.+.|.|+|-..-+.-.. . =..+..|.+.+.+.++.+.+.++. +
T Consensus 128 ~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~------~-~~~~eER~~~v~~av~~a~~~TG~~~~ 200 (367)
T cd08205 128 HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQ------P-YAPFEERVRACMEAVRRANEETGRKTL 200 (367)
T ss_pred CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCc------c-cCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence 4678888776 4579999999999999999998543221111 0 122345667777777777766643 2
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEe---
Q 017148 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN--- 213 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~n--- 213 (376)
+.+-+ .. ..+++++. ++.++++|+|++-|..-.. | +..+..+.++. ++||.+-
T Consensus 201 y~~ni----t~--~~~e~i~~-a~~a~~~Gad~vmv~~~~~---g-------------~~~~~~l~~~~-~lpi~~H~a~ 256 (367)
T cd08205 201 YAPNI----TG--DPDELRRR-ADRAVEAGANALLINPNLV---G-------------LDALRALAEDP-DLPIMAHPAF 256 (367)
T ss_pred EEEEc----CC--CHHHHHHH-HHHHHHcCCCEEEEecccc---c-------------ccHHHHHHhcC-CCeEEEccCc
Confidence 33322 21 13455554 4455689999988865321 1 11123333332 6666541
Q ss_pred -cC-------CCCHHHHHHHHH-cCcCeeEEch
Q 017148 214 -GG-------INTVDEVNAALR-KGAHHVMVGR 237 (376)
Q Consensus 214 -Gg-------I~s~~da~~~l~-~Gad~VmiGR 237 (376)
|- +.+..-..++.+ .|+|.+..+.
T Consensus 257 ~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~~ 289 (367)
T cd08205 257 AGALSRSPDYGSHFLLLGKLMRLAGADAVIFPG 289 (367)
T ss_pred ccccccCCCCcCCHHHHHHHHHHcCCCccccCC
Confidence 11 334444445555 7888886644
No 470
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=87.78 E-value=2.3 Score=37.31 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=42.8
Q ss_pred hcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeE
Q 017148 163 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM 234 (376)
Q Consensus 163 e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~Vm 234 (376)
++.+.|+|.|=++-. -..+.++.++. ++|||+.|=|.+-+++.++++.||-+|.
T Consensus 118 ~~~~pD~iEvLPGv~-----------------Pkvi~~i~~~t-~~piIAGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 118 EKSEPDFIEVLPGVM-----------------PKVIKEITEKT-HIPIIAGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred HHcCCCEEEEcCccc-----------------HHHHHHHHHhc-CCCEEeccccccHHHHHHHHHhCcEEEe
Confidence 467899998876521 23455666654 8999999999999999999999998876
No 471
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=87.72 E-value=5.3 Score=39.87 Aligned_cols=111 Identities=5% Similarity=-0.062 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCcccc---CCCCCCCCCCCCccc
Q 017148 119 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---NGISPAENRTIPPLK 194 (376)
Q Consensus 119 ~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~---~g~~~~~~~~~~~~~ 194 (376)
.+...+-+..+++.. ++|+.+.+--+.+ .++..+. ++.++++|+|+|.+.-..... ++. +..... +
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s----~~~~~~~-a~~~e~~GaD~iELNiSCPn~~~~r~~-g~~~gq----~ 166 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYN----KDAWEEI-IERVEETGVDALEINFSCPHGMPERKM-GAAVGQ----D 166 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCC----HHHHHHH-HHHHHhcCCCEEEEECCCCCCCCcCcc-chhhcc----C
Confidence 344444456666555 6799887643222 2333333 334567999999974221110 110 000001 1
Q ss_pred HHHHHHH---HhhCCCCeEEE--ecCCCCHHHHHHHHH-cCcCeeEEchHH
Q 017148 195 YEYYYAL---LRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMVGRAA 239 (376)
Q Consensus 195 ~~~v~~~---~~~~~~ipVi~--nGgI~s~~da~~~l~-~Gad~VmiGRa~ 239 (376)
.+.+.++ +++..++||+. .-++.+..++.+++. .|||+|.+---+
T Consensus 167 ~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 167 CDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred HHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 2333332 23334789874 567777877777555 999999875433
No 472
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=87.71 E-value=6.5 Score=38.12 Aligned_cols=90 Identities=9% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCCEEEEec-C-CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEe
Q 017148 64 QHPIVLQIG-G-SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC 141 (376)
Q Consensus 64 ~~p~~vQL~-g-~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 141 (376)
+.|+.+=+- | .+.+.+.+.++.++++|+|.|.+|..... ..|.+... ++ +.++.+++.+++||..=
T Consensus 133 ~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~------~~y~g~~~-~~----~~i~~ik~~~~iPVi~n- 200 (312)
T PRK10550 133 HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE------DGYRAEHI-NW----QAIGEIRQRLTIPVIAN- 200 (312)
T ss_pred CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc------cCCCCCcc-cH----HHHHHHHhhcCCcEEEe-
Confidence 578888764 3 34456789999999999999999975432 22332111 33 56666777778887651
Q ss_pred cCCCCCCccHHHHHHHHHHHhhcCCccEEEEc
Q 017148 142 RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH 173 (376)
Q Consensus 142 R~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh 173 (376)
.+..+.++.. ++++..|+|.|.+-
T Consensus 201 ----GdI~t~~da~----~~l~~~g~DgVmiG 224 (312)
T PRK10550 201 ----GEIWDWQSAQ----QCMAITGCDAVMIG 224 (312)
T ss_pred ----CCcCCHHHHH----HHHhccCCCEEEEc
Confidence 2223444432 34457899987764
No 473
>PTZ00333 triosephosphate isomerase; Provisional
Probab=87.70 E-value=21 Score=33.58 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=30.9
Q ss_pred CCeEEEecCCCCHHHHHHHHH-cCcCeeEEchHHhhCCchhhHhh
Q 017148 207 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV 250 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~-~Gad~VmiGRa~l~~P~lf~~~~ 250 (376)
+++|+.-|+|.... +.+.+. .++||+.||++.+. +. |...+
T Consensus 207 ~~~ILYGGSV~~~N-~~~l~~~~~vDG~LvG~asl~-~~-f~~Ii 248 (255)
T PTZ00333 207 ATRIIYGGSVNEKN-CKELIKQPDIDGFLVGGASLK-PD-FVDII 248 (255)
T ss_pred cceEEEcCCCCHHH-HHHHhcCCCCCEEEEehHhhh-hh-HHHHH
Confidence 68999999995554 445554 89999999999997 65 55443
No 474
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=87.68 E-value=2.8 Score=40.18 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecCCCCHHHHHH
Q 017148 146 DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 146 ~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGgI~s~~da~~ 224 (376)
+..-+.+.+.+.+..++. .|++.|.+.|.+......+..+. .+.+...++... ++||++.=+-.+.+++.+
T Consensus 15 dg~iD~~~l~~lv~~~~~-~Gv~gi~v~GstGE~~~Ls~~Er-------~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~ 86 (294)
T TIGR02313 15 NGDIDEEALRELIEFQIE-GGSHAISVGGTSGEPGSLTLEER-------KQAIENAIDQIAGRIPFAPGTGALNHDETLE 86 (294)
T ss_pred CCCcCHHHHHHHHHHHHH-cCCCEEEECccCcccccCCHHHH-------HHHHHHHHHHhCCCCcEEEECCcchHHHHHH
Q ss_pred HHH----cCcCeeEEchHHhhCC
Q 017148 225 ALR----KGAHHVMVGRAAYQNP 243 (376)
Q Consensus 225 ~l~----~Gad~VmiGRa~l~~P 243 (376)
..+ .|||+||+.-..+..|
T Consensus 87 ~a~~A~~~Gad~v~v~pP~y~~~ 109 (294)
T TIGR02313 87 LTKFAEEAGADAAMVIVPYYNKP 109 (294)
T ss_pred HHHHHHHcCCCEEEEcCccCCCC
No 475
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=87.52 E-value=6.4 Score=37.07 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=73.8
Q ss_pred CCChHHHHHHHHHhCCCcEEEecceeec-ccccccc---hhhhhh------ccCCCCCCEEEEe-cC---CCHHH-HHHH
Q 017148 18 DWTDNHYRTLARLISKHAWLYTEMLAAE-TIIYQQG---NLDRFL------AFSPEQHPIVLQI-GG---SNLDN-LAKA 82 (376)
Q Consensus 18 ~~td~~~r~~~~~~Gg~gl~~te~v~~~-~~~~~~~---~~~~~~------~~~~~~~p~~vQL-~g---~~~~~-~~~a 82 (376)
+.-|.++..++.+.| ++++..+=.... -+.+.+. ..+.++ .......-+++-+ |+ .++++ +..|
T Consensus 22 TaYD~~~A~~~d~ag-vD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA 100 (261)
T PF02548_consen 22 TAYDYPSARIADEAG-VDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNA 100 (261)
T ss_dssp E--SHHHHHHHHHTT--SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHH
T ss_pred ecccHHHHHHHHHcC-CCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHH
Confidence 445788888888886 888765421111 1111110 011111 1111222233333 22 34554 4555
Q ss_pred HHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecC---------CC----CCCc
Q 017148 83 TELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI---------GV----DDHD 149 (376)
Q Consensus 83 a~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~---------g~----~~~~ 149 (376)
.+.++++|+|.|-|-.|. ...++++++.+ .++||.--+-+ |+ .+.+
T Consensus 101 ~rl~ke~GadaVKlEGg~--------------------~~~~~i~~l~~-~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~ 159 (261)
T PF02548_consen 101 GRLMKEAGADAVKLEGGA--------------------EIAETIKALVD-AGIPVMGHIGLTPQSVHQLGGYRVQGKTAE 159 (261)
T ss_dssp HHHHHTTT-SEEEEEBSG--------------------GGHHHHHHHHH-TT--EEEEEES-GGGHHHHTSS--CSTSHH
T ss_pred HHHHHhcCCCEEEeccch--------------------hHHHHHHHHHH-CCCcEEEEecCchhheeccCCceEEecCHH
Confidence 556677999999774321 12345555543 37898765533 11 1112
Q ss_pred cHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecC
Q 017148 150 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 215 (376)
Q Consensus 150 ~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGg 215 (376)
+..++++. ++.+|++|+-.|.+..-. -+.-..+.++ .+||+|+-|.
T Consensus 160 ~a~~l~~~-A~ale~AGaf~ivlE~vp------------------~~la~~It~~-l~IPtIGIGa 205 (261)
T PF02548_consen 160 EAEKLLED-AKALEEAGAFAIVLECVP------------------AELAKAITEA-LSIPTIGIGA 205 (261)
T ss_dssp HHHHHHHH-HHHHHHHT-SEEEEESBB------------------HHHHHHHHHH-SSS-EEEESS
T ss_pred HHHHHHHH-HHHHHHcCccEEeeecCH------------------HHHHHHHHHh-CCCCEEecCC
Confidence 33444443 456789999999987532 2333445555 4999998774
No 476
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=87.45 E-value=20 Score=36.12 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=87.0
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEEe--cCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017148 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEINL--NCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~Iei--N~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.++|++.-+. |-+|+.+++.+..+...|.|.|-= |+..|. =+-+.+|.+.+.+.+++..+.++..
T Consensus 142 ~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~~~~~a~~~a~~eTG~~ 212 (412)
T TIGR03326 142 KDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQP---------FNRFEERVEKLYKVRDKVEAETGER 212 (412)
T ss_pred CCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCC---------CccHHHHHHHHHHHHHHHHHHhCCc
Confidence 4688887775 668999999999998889888832 222111 1122345566666666666667654
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--CCCCeEEE--
Q 017148 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTL-- 212 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~ipVi~-- 212 (376)
...-..+ .. +.+++.+.. +.+.+.|+.++-|..-+. | +..+..+++. ..++||.+
T Consensus 213 ~~ya~Ni--T~--~~~em~~ra-~~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~~l~ih~Hr 271 (412)
T TIGR03326 213 KEYLANI--TA--PVREMERRA-ELVADLGGQYVMVDVVVC---G-------------WSALQYIRELTEDLGLAIHAHR 271 (412)
T ss_pred ceEEEEe--cC--CHHHHHHHH-HHHHHhCCCeEEEEeecc---c-------------hHHHHHHHHhhccCCeEEEEcC
Confidence 3322222 22 244555543 334568998888765432 2 4445555553 34788876
Q ss_pred --ec--------CCCCHHHHHHHHH-cCcCeeEEchH
Q 017148 213 --NG--------GINTVDEVNAALR-KGAHHVMVGRA 238 (376)
Q Consensus 213 --nG--------gI~s~~da~~~l~-~Gad~VmiGRa 238 (376)
.| ||.. .-..++.+ .|+|.+.++..
T Consensus 272 a~~ga~~~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 272 AMHAAFTRNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred CcccccccCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 22 4543 33555556 89999998876
No 477
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.42 E-value=11 Score=36.19 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc--CccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 152 (376)
|.+.+.+-++.+.+.|+|+|=++.. +|+ + ..-..+.-.++++.+.+.+ .+||.+-+ | . ++.
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~Gs--------tGE-~--~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~--~--~t~ 86 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGG--------TGE-F--FSLTPAEYEQVVEIAVSTAKGKVPVYTGV--G--G--NTS 86 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCC--------CcC-c--ccCCHHHHHHHHHHHHHHhCCCCcEEEec--C--c--cHH
Confidence 6788899999999999999988642 233 2 2223344445555444433 46777754 2 1 244
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEE-Ee--cCCCCHHHHHHHHH
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LN--GGINTVDEVNAALR 227 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi-~n--GgI~s~~da~~~l~ 227 (376)
+.++. ++.+++.|+|++.+..-. +...+ ...-++++.++.+.. ++||+ .| |--.+++.+.++.+
T Consensus 87 ~ai~~-a~~a~~~Gadav~~~pP~--y~~~s-------~~~i~~~f~~v~~a~-~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 87 DAIEI-ARLAEKAGADGYLLLPPY--LINGE-------QEGLYAHVEAVCEST-DLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHH-HHHHHHhCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHh
Confidence 55543 456678999999886521 11100 011245666666653 78865 33 32345666666653
No 478
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=87.35 E-value=1.6 Score=41.01 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017148 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
.+++...+-|+...+.|+|.||||+++..+.... -+.....+.+..+|+.+++.++.|+++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~-----~~~~~E~~rl~~~v~~l~~~~~~piSI 81 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEP-----VSVEEELERVIPVLRALAGEPDVPISV 81 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc-----CCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3677777778878888999999998765442111 111234467888899998877888877
No 479
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=87.28 E-value=6.2 Score=38.45 Aligned_cols=154 Identities=11% Similarity=0.143 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEecCC-------CCCccccCCCCccccccCCHHH----HHHHHHHHhcc--cCccEEEEec
Q 017148 76 LDNLAKATELANAYNYDEINLNCG-------CPSPKVAGHGCFGVSLMLDPKF----VGEAMSVIAAN--TNVPVSVKCR 142 (376)
Q Consensus 76 ~~~~~~aa~~~~~~G~d~IeiN~g-------cP~~~v~r~g~yG~~l~~~~~~----~~eiv~~v~~~--~~~pv~vKiR 142 (376)
.....+..+.+.++||.+|.+-.= -|.+.+.+..+ ..+++|..-+ +...++.+++. .+.|+.+-+-
T Consensus 58 ~~~~~~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~-~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~ 136 (327)
T cd04738 58 FDKNAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPE-DEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIG 136 (327)
T ss_pred CCCCHHHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccC-ccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEe
Confidence 334456666767899999998543 23333222111 1122222111 23333333322 4678888773
Q ss_pred CCCCC--CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC----CCeEEE--ec
Q 017148 143 IGVDD--HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP----DLTFTL--NG 214 (376)
Q Consensus 143 ~g~~~--~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~----~ipVi~--nG 214 (376)
-.-.. ....++.++.+.++ . .++|+|.+.-.-....|... ...+....+.+.++++... ++||++ .-
T Consensus 137 g~~~~~~~~~~~d~~~~~~~~-~-~~ad~ielN~scP~~~g~~~---~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~ 211 (327)
T cd04738 137 KNKDTPLEDAVEDYVIGVRKL-G-PYADYLVVNVSSPNTPGLRD---LQGKEALRELLTAVKEERNKLGKKVPLLVKIAP 211 (327)
T ss_pred CCCCCcccccHHHHHHHHHHH-H-hhCCEEEEECCCCCCCcccc---ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCC
Confidence 32111 11234444433322 2 24899888532221112110 0111111344455554431 277764 33
Q ss_pred CCC--CHHHHHHHHH-cCcCeeEE
Q 017148 215 GIN--TVDEVNAALR-KGAHHVMV 235 (376)
Q Consensus 215 gI~--s~~da~~~l~-~Gad~Vmi 235 (376)
+.. +...+.++++ .|+|+|.+
T Consensus 212 ~~~~~~~~~ia~~l~~aGad~I~~ 235 (327)
T cd04738 212 DLSDEELEDIADVALEHGVDGIIA 235 (327)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 332 3344444454 89999875
No 480
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.22 E-value=28 Score=33.24 Aligned_cols=156 Identities=15% Similarity=0.072 Sum_probs=90.9
Q ss_pred cCCCCCCEEEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEE
Q 017148 60 FSPEQHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSV 139 (376)
Q Consensus 60 ~~~~~~p~~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~v 139 (376)
......|+++++.. +.++-.+.++.++++|+|++-+- .|.-. . ...+.+.+-.+.|.+++++|+.+
T Consensus 70 ~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~--pP~y~-------~----~s~~~i~~~f~~v~~a~~~pvil 135 (296)
T TIGR03249 70 TAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLL--PPYLI-------N----GEQEGLYAHVEAVCESTDLGVIV 135 (296)
T ss_pred HhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEEC--CCCCC-------C----CCHHHHHHHHHHHHhccCCCEEE
Confidence 34456799999975 68888899999999999999873 24321 1 13466777888888888899888
Q ss_pred EecCCCCCCccHHHHHHHHHHHhhc-CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCC-CCeEEEecC-C
Q 017148 140 KCRIGVDDHDSYNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGG-I 216 (376)
Q Consensus 140 KiR~g~~~~~~~~~~~~~i~~~~e~-~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~-~ipVi~nGg-I 216 (376)
--+.|.+- +.+ + +.++.++ -.+..|--+.+ +...+.++++... ++ .|.+|. .
T Consensus 136 Yn~~g~~l--~~~-~---~~~La~~~~nvvgiKds~~------------------d~~~~~~~~~~~~~~~-~v~~G~~~ 190 (296)
T TIGR03249 136 YQRDNAVL--NAD-T---LERLADRCPNLVGFKDGIG------------------DMEQMIEITQRLGDRL-GYLGGMPT 190 (296)
T ss_pred EeCCCCCC--CHH-H---HHHHHhhCCCEEEEEeCCC------------------CHHHHHHHHHHcCCCe-EEEeCCCc
Confidence 66665432 222 2 2333332 23444433221 1344445544433 33 344442 2
Q ss_pred CCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhhhhhhC
Q 017148 217 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG 256 (376)
Q Consensus 217 ~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~~~~~g 256 (376)
. -..+...+..|++|++.|-+-+ .|.++.+.++....|
T Consensus 191 ~-d~~~~~~~~~Ga~G~is~~~n~-~P~~~~~~~~~~~~g 228 (296)
T TIGR03249 191 A-EVTAPAYLPLGVTSYSSAIFNF-IPHIARAFYEALRRG 228 (296)
T ss_pred c-hhhHHHHHhCCCCEEEecHHHh-hHHHHHHHHHHHHcC
Confidence 1 2234455667999999885533 466655444443344
No 481
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=87.18 E-value=3.6 Score=42.50 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 77 DNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 77 ~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
+...+-|+...+.|+|.||||+++..+ .++.+..+|+++++.++.|++|-
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p--------------~~~~v~~~V~~l~~~~~~pISID 214 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDD--------------DPDVVKEKVKTALDALDSPVIAD 214 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCC--------------cHHHHHHHHHHHHhhCCCcEEEe
Confidence 555666666778899999999765422 23468899999988778898883
No 482
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=87.18 E-value=5.1 Score=36.46 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=34.1
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCc
Q 017148 207 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 244 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~ 244 (376)
++-+++-.||+|++|+....+.|+.+|.+|..++..-+
T Consensus 237 Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sD 274 (289)
T KOG4201|consen 237 DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSD 274 (289)
T ss_pred ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccC
Confidence 67789999999999999999999999999999996533
No 483
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=87.17 E-value=17 Score=33.02 Aligned_cols=142 Identities=16% Similarity=0.092 Sum_probs=73.5
Q ss_pred CCEEEEec-CCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEec
Q 017148 65 HPIVLQIG-GSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR 142 (376)
Q Consensus 65 ~p~~vQL~-g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR 142 (376)
.++++-+- +--++....+++.+.++|+|.+.+|... | .+-+...++..++.- .+-+.+.++
T Consensus 50 ~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~-----------g------~~~l~~~~~~~~~~~~~v~~v~~ls 112 (213)
T TIGR01740 50 KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVA-----------G------SESVEAAKEAASEGGRGLLAVTELT 112 (213)
T ss_pred CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCC-----------C------HHHHHHHHHHhhcCCCeEEEEEcCC
Confidence 35666653 2224455556666778999999998421 2 233445555544321 111222222
Q ss_pred -CCCCC-CccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHH
Q 017148 143 -IGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD 220 (376)
Q Consensus 143 -~g~~~-~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~ 220 (376)
.+..+ ...+.+.+-.+++...+.|++.+..++ +.+..+++...+ .++..+||.-..
T Consensus 113 s~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~~---------------------~~~~~ir~~~~~-~~~vtPGI~~~g 170 (213)
T TIGR01740 113 SMGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCSA---------------------EEAKEIRKFTGD-FLILTPGIRLQS 170 (213)
T ss_pred CCChhhhCcCHHHHHHHHHHHhhhcCCeEEEeCH---------------------HHHHHHHHhcCC-ceEEeCCcCCCC
Confidence 22111 112222222234444556776654221 122333333333 468888886331
Q ss_pred --H--------HHHHHHcCcCeeEEchHHhhCCch
Q 017148 221 --E--------VNAALRKGAHHVMVGRAAYQNPWY 245 (376)
Q Consensus 221 --d--------a~~~l~~Gad~VmiGRa~l~~P~l 245 (376)
. +..+.+.|+|.+.+||+++..+..
T Consensus 171 ~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~ 205 (213)
T TIGR01740 171 KGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDP 205 (213)
T ss_pred CCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCH
Confidence 1 255667899999999999887764
No 484
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=87.16 E-value=22 Score=31.87 Aligned_cols=122 Identities=15% Similarity=0.194 Sum_probs=65.2
Q ss_pred EecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCC
Q 017148 70 QIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDH 148 (376)
Q Consensus 70 QL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~ 148 (376)
+++|-... +-++.+.+.|+|.|-+-+-.+++. . -+++.+.++.+.+.... .++|++ +
T Consensus 2 KiCGi~~~---ed~~~a~~~Gvd~ig~i~~~~s~R-----~------v~~~~a~~l~~~~~~~~~~V~v~v------n-- 59 (203)
T cd00405 2 KICGITTL---EDALAAAEAGADAIGFIFAPKSPR-----Y------VSPEQAREIVAALPPFVKRVGVFV------N-- 59 (203)
T ss_pred EECCCCCH---HHHHHHHHcCCCEEEEecCCCCCC-----C------CCHHHHHHHHHhCCCCCcEEEEEe------C--
Confidence 45664322 234556678999998875333221 1 24566777766665422 344444 1
Q ss_pred ccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH--HH
Q 017148 149 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA--AL 226 (376)
Q Consensus 149 ~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~--~l 226 (376)
++.+++. .++.+.|+|.|++|+... .+.+.++.+.. +.++|-.=++.+..+... ..
T Consensus 60 ~~~~~i~----~ia~~~~~d~Vqlhg~e~-----------------~~~~~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~ 117 (203)
T cd00405 60 EDLEEIL----EIAEELGLDVVQLHGDES-----------------PEYCAQLRARL-GLPVIKAIRVKDEEDLEKAAAY 117 (203)
T ss_pred CCHHHHH----HHHHhcCCCEEEECCCCC-----------------HHHHHHHHhhc-CCcEEEEEecCChhhHHHhhhc
Confidence 2233332 334578999999997531 22344444433 445553334555555443 23
Q ss_pred HcCcCeeEE
Q 017148 227 RKGAHHVMV 235 (376)
Q Consensus 227 ~~Gad~Vmi 235 (376)
..++|.+.+
T Consensus 118 ~~~aD~il~ 126 (203)
T cd00405 118 AGEVDAILL 126 (203)
T ss_pred cccCCEEEE
Confidence 368999865
No 485
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=87.06 E-value=15 Score=36.75 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=86.7
Q ss_pred CCCCEEEEec----CCCHHHHHHHHHHHHHCCCCEEE--ecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCcc
Q 017148 63 EQHPIVLQIG----GSNLDNLAKATELANAYNYDEIN--LNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVP 136 (376)
Q Consensus 63 ~~~p~~vQL~----g~~~~~~~~aa~~~~~~G~d~Ie--iN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~p 136 (376)
.++|++..+. |-+|+.+++.+..+...|.|.|- =|+..+. =+-+..|.+.+.+.+++..+.++..
T Consensus 122 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~---------~~p~~eRv~a~~~a~~~a~~eTG~~ 192 (391)
T cd08209 122 HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNP---------LAPALERIRACRPVLQEVYEQTGRR 192 (391)
T ss_pred CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC---------CCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 5788888876 66899999999988888988872 2222111 1123345566666666666667654
Q ss_pred EEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh-CCCCeEEE---
Q 017148 137 VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTL--- 212 (376)
Q Consensus 137 v~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~-~~~ipVi~--- 212 (376)
...-..+ .. +.+++.+... .+.+.|+.++.+..-+. | +..+..+.+. ..++||.+
T Consensus 193 ~~ya~Ni--T~--~~~em~~ra~-~~~~~G~~~~mv~~~~~---G-------------~~~l~~l~~~~~~~lpIhaHra 251 (391)
T cd08209 193 TLYAVNL--TG--PVFTLKEKAR-RLVEAGANALLFNVFAY---G-------------LDVLEALASDPEINVPIFAHPA 251 (391)
T ss_pred ceEEEEc--CC--CHHHHHHHHH-HHHHhCCCEEEEecccc---c-------------hHHHHHHHhcCcCCcEEEecCC
Confidence 3322222 22 2455655433 34569999888765331 2 4445555553 12677763
Q ss_pred -ec--------CCCCHHHHHHHHH-cCcCeeEEchH
Q 017148 213 -NG--------GINTVDEVNAALR-KGAHHVMVGRA 238 (376)
Q Consensus 213 -nG--------gI~s~~da~~~l~-~Gad~VmiGRa 238 (376)
.| ||...--..++.+ .|+|.+.++..
T Consensus 252 ~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 252 FAGALYGSPDYGIAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred cccccccCCCCCCcHHHHHHHHHHHcCCCccccCCc
Confidence 23 3333234455566 89999988875
No 486
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=87.01 E-value=1.4 Score=43.65 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=36.6
Q ss_pred cccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEc
Q 017148 192 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG 236 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiG 236 (376)
.+.|+.+..+++.. +.|||.-| |.+++|+..+++.|||+|.++
T Consensus 222 ~~~w~~i~~ir~~~-~~pviiKg-V~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 222 SFNWQDLRWLRDLW-PHKLLVKG-IVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred cCCHHHHHHHHHhC-CCCEEEec-CCCHHHHHHHHHCCcCEEEEC
Confidence 34688888888876 77888875 999999999999999999873
No 487
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=86.91 E-value=11 Score=36.72 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=35.1
Q ss_pred HHHHH-HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEec
Q 017148 82 ATELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR 142 (376)
Q Consensus 82 aa~~~-~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR 142 (376)
-|++. +++|+|.|+||+....+. +++ ..++.+.++++.|.+.+++|+.|-..
T Consensus 80 ~Ak~q~~~~GAd~Idl~~~s~dp~--~~d-------~~~~e~~~~Vk~V~eavd~PL~Id~s 132 (319)
T PRK04452 80 WAKKCVEEYGADMITLHLISTDPN--GKD-------KSPEEAAKTVEEVLQAVDVPLIIGGS 132 (319)
T ss_pred HHHHHHHHhCCCEEEEECCCCCcc--ccc-------chHHHHHHHHHHHHHhCCCCEEEecC
Confidence 34444 489999999996433221 112 23567888999998889999987433
No 488
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=86.82 E-value=34 Score=34.60 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=106.7
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhh----c-cCCCC--CCEEEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFL----A-FSPEQ--HPIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~----~-~~~~~--~p~~vQL~g~~~~~~~~aa~ 84 (376)
|=.|.|..+++.++ ...||++++= -|.+....+..-.+...... + ..+.+ .-..++|.+.+++++.+-++
T Consensus 141 P~~Glsp~~~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~em~~ra~ 220 (414)
T cd08206 141 PKLGLSPKEYARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPEEMIKRAE 220 (414)
T ss_pred cccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHHHHHHHHH
Confidence 65688889998876 4668888763 23233222222111111111 1 11223 34788998888999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcc---cCccEEEEecCCCCC-------CccHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---TNVPVSVKCRIGVDD-------HDSYNQL 154 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~---~~~pv~vKiR~g~~~-------~~~~~~~ 154 (376)
.+.++|..++-+|.. ..+|. .++++++. .++|+-. .|.++.- .-+.
T Consensus 221 ~~~~~G~~~~mv~~~--------~~G~~------------~l~~l~~~~~~~~l~ih~-HrA~~ga~~~~~~~Gis~--- 276 (414)
T cd08206 221 FAKELGSVIVMVDGV--------TAGWT------------AIQSARRWCPDNGLALHA-HRAGHAAFTRQKNHGISM--- 276 (414)
T ss_pred HHHHhCCcEEEEeee--------cccHH------------HHHHHHHhccccCeEEEE-ccccceecccCCCCcCcH---
Confidence 999999999888741 11222 23444442 3455533 2332211 1112
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh--------------C---CC-CeEEEecCC
Q 017148 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD--------------F---PD-LTFTLNGGI 216 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~--------------~---~~-ipVi~nGgI 216 (376)
..+.++..-+|+|.+++.+-.....+. . .........+... . .. .| +.+||+
T Consensus 277 -~vl~kl~RLaGaD~ih~~t~~Gk~~~~---~-----~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~k~~~P-v~sGG~ 346 (414)
T cd08206 277 -RVLAKLARLIGVDHIHTGTVVGKLEGD---P-----SEVKGIADMLREDEVEGDLSRIFFNQDWGGMKPVFP-VASGGL 346 (414)
T ss_pred -HHHHHHHHHcCCCccccCCCccCCCCC---H-----HHHHHHHHHhhcccccCCccccccccccccCCCcEE-ecCCcc
Confidence 124566667899998764321111110 0 0001111111111 1 11 33 456777
Q ss_pred CCHHHHHHHHH-cCcCe-eEEchHHhhCCchh
Q 017148 217 NTVDEVNAALR-KGAHH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 217 ~s~~da~~~l~-~Gad~-VmiGRa~l~~P~lf 246 (376)
++..+.++++ .|-|. +++|-|+++.|+=.
T Consensus 347 -~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~ 377 (414)
T cd08206 347 -HPGRMPALIEILGDDVILQFGGGTHGHPDGP 377 (414)
T ss_pred -ChhHHHHHHHHhCCceEEecCCceecCCCCh
Confidence 7888888888 89884 45788999999863
No 489
>PLN02561 triosephosphate isomerase
Probab=86.80 E-value=15 Score=34.52 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=32.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHcCcCeeEEchHHhhCCchhhHhhh
Q 017148 207 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD 251 (376)
Q Consensus 207 ~ipVi~nGgI~s~~da~~~l~~Gad~VmiGRa~l~~P~lf~~~~~ 251 (376)
+++|+.-|+|....+.+-+...++||+.||++.|. |. |...++
T Consensus 204 ~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~-~~-F~~ii~ 246 (253)
T PLN02561 204 TTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK-PE-FIDIIK 246 (253)
T ss_pred cceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH-HH-HHHHHH
Confidence 68999999996555554444489999999999998 55 655443
No 490
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=86.74 E-value=11 Score=34.73 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=79.9
Q ss_pred hhccCCCCCCEEEEecCCCHHHHHHHHHHHH-HCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCc
Q 017148 57 FLAFSPEQHPIVLQIGGSNLDNLAKATELAN-AYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV 135 (376)
Q Consensus 57 ~~~~~~~~~p~~vQL~g~~~~~~~~aa~~~~-~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~ 135 (376)
+.+.-+.+.|+.+|+++.+.+.+.+-|+++. ..| +-+-+ =.|. +.. | .+.++.+.+. ++
T Consensus 47 i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~~~~~-~nv~V--KIP~-----T~~-G----------l~Ai~~L~~~-Gi 106 (222)
T PRK12656 47 VREIIGDEASIHVQVVAQDYEGILKDAHEIRRQCG-DDVYI--KVPV-----TPA-G----------LAAIKTLKAE-GY 106 (222)
T ss_pred HHHHhCCCCcEEEEEEECCHHHHHHHHHHHHHHhC-CCEEE--EeCC-----CHH-H----------HHHHHHHHHC-CC
Confidence 3344445678999999999999999999886 455 21222 1232 222 3 2333333322 55
Q ss_pred cEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEc-cCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEec
Q 017148 136 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG 214 (376)
Q Consensus 136 pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh-~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nG 214 (376)
++.+-.= -+..+.. ++.++|+++|..- ||-.. .|..+ . .....+.++.+....-.-|...
T Consensus 107 ~vn~T~i------fs~~Qa~-----~Aa~aGa~yvsPyvgRi~d-~g~D~-----~--~~i~~i~~~~~~~~~~tkILaA 167 (222)
T PRK12656 107 HITATAI------YTVFQGL-----LAIEAGADYLAPYYNRMEN-LNIDS-----N--AVIGQLAEAIDRENSDSKILAA 167 (222)
T ss_pred ceEEeee------CCHHHHH-----HHHHCCCCEEecccchhhh-cCCCH-----H--HHHHHHHHHHHhcCCCCEEEEE
Confidence 5554211 1233321 2235999997764 44321 12111 0 0022223333332223457778
Q ss_pred CCCCHHHHHHHHHcCcCeeEEchHH
Q 017148 215 GINTVDEVNAALRKGAHHVMVGRAA 239 (376)
Q Consensus 215 gI~s~~da~~~l~~Gad~VmiGRa~ 239 (376)
.+++++++.++...|||.|-+.=.+
T Consensus 168 S~r~~~~v~~a~~~G~d~vTvp~~v 192 (222)
T PRK12656 168 SFKNVAQVNKAFALGAQAVTAGPDV 192 (222)
T ss_pred ecCCHHHHHHHHHcCCCEEecCHHH
Confidence 9999999999999999999885433
No 491
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=86.71 E-value=17 Score=33.62 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHHH
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQ 153 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 153 (376)
+.++..+.++.+.++|+|.||+-.+.|.+.+ .++.+ ..++++.+++.. +.++.+=+|.+ .+
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~--------p~~~~---~~~~i~~l~~~~~~~~~~~l~~~~-------~~ 78 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAV--------PQMED---DWEVLRAIRKLVPNVKLQALVRNR-------EK 78 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcccc--------ccCCC---HHHHHHHHHhccCCcEEEEEccCc-------hh
Confidence 5788888999999999999999887765432 12222 345566666544 45555544443 11
Q ss_pred HHHHHHHHhhcCCccEEEEcc
Q 017148 154 LCDFIYKVSSLSPTRHFIIHS 174 (376)
Q Consensus 154 ~~~~i~~~~e~~Gvd~I~vh~ 174 (376)
.+ . .+.++|++.|.+..
T Consensus 79 ~i---~-~a~~~g~~~i~i~~ 95 (265)
T cd03174 79 GI---E-RALEAGVDEVRIFD 95 (265)
T ss_pred hH---H-HHHhCCcCEEEEEE
Confidence 11 2 23368999998864
No 492
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=86.60 E-value=22 Score=36.23 Aligned_cols=196 Identities=16% Similarity=0.248 Sum_probs=106.2
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhh----c-cCCCCC--CEEEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFL----A-FSPEQH--PIVLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~----~-~~~~~~--p~~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.+..++..++ ...||++++= -|......+..-.+...... + ..+.+. -..++|.+.+++++.+-++
T Consensus 154 P~iGlsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~ 233 (450)
T cd08212 154 PKLGLSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEEMYKRAE 233 (450)
T ss_pred CccCCCHHHHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHHHHHHHH
Confidence 65788999998876 3567777663 22332222221111111111 1 122332 3578998888999999999
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc---ccCccEEEEecCCCCC-------CccHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDD-------HDSYNQL 154 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~---~~~~pv~vKiR~g~~~-------~~~~~~~ 154 (376)
++.++|...+-+|+ +. +|.+ ++++++ ..++|+-. .|.++.- .-+.
T Consensus 234 ~a~~~G~~~~mv~~------~~---G~~~------------l~~l~~~a~~~~l~Iha-HrA~~ga~~r~~~~Gis~--- 288 (450)
T cd08212 234 FAKELGSPIIMHDL------LT---GFTA------------IQSLAKWCRDNGMLLHL-HRAGHATYDRQKNHGIHF--- 288 (450)
T ss_pred HHHHhCCCeEeeec------cc---ccch------------HHHHHHHhhhcCceEEe-ccccceecccCccCCcCH---
Confidence 99999999988874 11 2331 223322 24566543 2333211 1112
Q ss_pred HHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhh---------------C---C-CCeEEEecC
Q 017148 155 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD---------------F---P-DLTFTLNGG 215 (376)
Q Consensus 155 ~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~---------------~---~-~ipVi~nGg 215 (376)
..+.+++.-+|+|.+++.+-.....+. . .........+... . . -+|| .+||
T Consensus 289 -~vl~kl~RLaGaD~ih~~t~~Gk~~~~---~-----~~~~~~~~~~~~~~~~~d~~~~~~~~q~~~~~k~~~Pv-~sGG 358 (450)
T cd08212 289 -RVLAKWLRLSGVDHIHAGTVVGKLEGD---P-----LVTLGFYDLLRDDYIEKDRSRGIFFTQDWASLPGVMPV-ASGG 358 (450)
T ss_pred -HHHHHHHHHcCCCccccCCCcCCcCCC---H-----HHHHHHHHHHhhhhcccccccccccccccccCCCceEe-cCCC
Confidence 123556666899998876432111111 0 0001111111110 1 1 2443 4566
Q ss_pred CCCHHHHHHHHH-cCcCe-eEEchHHhhCCchh
Q 017148 216 INTVDEVNAALR-KGAHH-VMVGRAAYQNPWYT 246 (376)
Q Consensus 216 I~s~~da~~~l~-~Gad~-VmiGRa~l~~P~lf 246 (376)
+ ++..+.++++ .|.|. +++|-|+++.|+=.
T Consensus 359 ~-~~~~vp~~~~~~G~Dvil~~GGGi~gHP~G~ 390 (450)
T cd08212 359 I-HVGQMHQLIEIFGDDVVLQFGGGTIGHPWGI 390 (450)
T ss_pred C-CHHHHHHHHHhcCCceEEecCcceecCCCCh
Confidence 6 7888888888 89884 45789999999864
No 493
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=86.50 E-value=1.6 Score=40.83 Aligned_cols=74 Identities=19% Similarity=0.116 Sum_probs=58.1
Q ss_pred HHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHHcCcCeeEEch
Q 017148 158 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR 237 (376)
Q Consensus 158 i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~~Gad~VmiGR 237 (376)
+++..+++|+++|.|-......+|. ++.+..++.. +++||..=-=|.|+-++.++...|||+|.+=-
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs------------~e~L~~v~~~-v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~ 137 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGS------------FEDLRAVRAA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIV 137 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCC------------HHHHHHHHHh-cCCCeeeccCCCCHHHHHHHHHcCcccHHHHH
Confidence 3566788999999987655444442 7778777665 49999999999999999999999999998766
Q ss_pred HHhhCCc
Q 017148 238 AAYQNPW 244 (376)
Q Consensus 238 a~l~~P~ 244 (376)
++|.+-.
T Consensus 138 ~~L~~~~ 144 (254)
T COG0134 138 AALDDEQ 144 (254)
T ss_pred HhcCHHH
Confidence 6665553
No 494
>TIGR03586 PseI pseudaminic acid synthase.
Probab=86.48 E-value=15 Score=35.91 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCCccc---------cCCCCccc----cccCCHHHHHHHHHHH---hcccCccEE
Q 017148 75 NLDNLAKATELANAYNYDEINLNCGCPSPKV---------AGHGCFGV----SLMLDPKFVGEAMSVI---AANTNVPVS 138 (376)
Q Consensus 75 ~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v---------~r~g~yG~----~l~~~~~~~~eiv~~v---~~~~~~pv~ 138 (376)
+.+...+.++.+.++|+|+|-+..=.+..-+ .+.+.|.+ .+.+..++-.+..+.+ .+..++++.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 4555556667778899999887643221100 01112221 0112222222222222 344566664
Q ss_pred EEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCC
Q 017148 139 VKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 218 (376)
Q Consensus 139 vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s 218 (376)
.- -++. . -+++ +++.|++.+-|..+... ++.++..+.+. +.|||..-|..|
T Consensus 95 st---pfd~-~----svd~----l~~~~v~~~KI~S~~~~---------------n~~LL~~va~~--gkPvilstG~~t 145 (327)
T TIGR03586 95 SS---PFDE-T----AVDF----LESLDVPAYKIASFEIT---------------DLPLIRYVAKT--GKPIIMSTGIAT 145 (327)
T ss_pred Ec---cCCH-H----HHHH----HHHcCCCEEEECCcccc---------------CHHHHHHHHhc--CCcEEEECCCCC
Confidence 41 1221 1 2222 34689999998876531 26777777663 899999988899
Q ss_pred HHHHHHHHH----cCcCeeEE
Q 017148 219 VDEVNAALR----KGAHHVMV 235 (376)
Q Consensus 219 ~~da~~~l~----~Gad~Vmi 235 (376)
.+++..+++ .|+.-|++
T Consensus 146 ~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 146 LEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred HHHHHHHHHHHHHCCCCcEEE
Confidence 999887775 56744554
No 495
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=86.38 E-value=19 Score=37.03 Aligned_cols=198 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred cCCCCChHHHHHHH--HHhCCCcEEE-ecceeecccccccchhhhhhc------cCCCCCCE-EEEecCCCHHHHHHHHH
Q 017148 15 PMMDWTDNHYRTLA--RLISKHAWLY-TEMLAAETIIYQQGNLDRFLA------FSPEQHPI-VLQIGGSNLDNLAKATE 84 (376)
Q Consensus 15 PM~~~td~~~r~~~--~~~Gg~gl~~-te~v~~~~~~~~~~~~~~~~~------~~~~~~p~-~vQL~g~~~~~~~~aa~ 84 (376)
|-.|.|..++..++ ...||+++|= -|.+....+..-.+......+ -...++++ .++|.+.+++++.+-++
T Consensus 176 P~~GLsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~ 255 (475)
T CHL00040 176 PKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAV 255 (475)
T ss_pred cccCCCHHHHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHH
Q ss_pred HHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhc---ccCccEEEEecCCCCCCcc-----HHHHHH
Q 017148 85 LANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAA---NTNVPVSVKCRIGVDDHDS-----YNQLCD 156 (376)
Q Consensus 85 ~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~---~~~~pv~vKiR~g~~~~~~-----~~~~~~ 156 (376)
++.++|..++-+|. .+..-+. ++.+++ ..++|+-. .|.++.-... +.-.+
T Consensus 256 ~a~e~G~~~~mv~~-----~~~G~~a---------------l~~l~~~~~~~~l~Iha-HrA~~ga~~r~~~~Gis~~v- 313 (475)
T CHL00040 256 FARELGVPIVMHDY-----LTGGFTA---------------NTSLAHYCRDNGLLLHI-HRAMHAVIDRQKNHGIHFRV- 313 (475)
T ss_pred HHHHcCCceEEEec-----cccccch---------------HHHHHHHhhhcCceEEe-ccccccccccCccCCCcHHH-
Q ss_pred HHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC------------------CCCeEEEecCCCC
Q 017148 157 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF------------------PDLTFTLNGGINT 218 (376)
Q Consensus 157 ~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~------------------~~ipVi~nGgI~s 218 (376)
+.++..-+|+|.+++.+-.....|..... ......+.... ..+-=+.+||+ +
T Consensus 314 -l~KL~RLaGaD~ih~~t~~gk~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~q~~~~~k~~~Pv~SGG~-~ 383 (475)
T CHL00040 314 -LAKALRMSGGDHIHAGTVVGKLEGEREMT--------LGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGI-H 383 (475)
T ss_pred -HHHHHHHcCCCccccCCcccCCCCCHHHH--------HHHHHHHHhhhhhccccccccccccccCCCCceEecCCCC-C
Q ss_pred HHHHHHHHH-cCcC-eeEEchHHhhCCc
Q 017148 219 VDEVNAALR-KGAH-HVMVGRAAYQNPW 244 (376)
Q Consensus 219 ~~da~~~l~-~Gad-~VmiGRa~l~~P~ 244 (376)
+..+.++++ .|-| .+++|-|+++.|+
T Consensus 384 ~g~vp~~~~~~G~Dvil~aGGGi~gHPd 411 (475)
T CHL00040 384 VWHMPALTEIFGDDSVLQFGGGTLGHPW 411 (475)
T ss_pred HHHHHHHHHHhCCCeeEecCcceecCCC
No 496
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=86.37 E-value=21 Score=36.37 Aligned_cols=122 Identities=12% Similarity=0.072 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHH-HHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhccc-CccEEEEecCCCCCCccHH
Q 017148 75 NLDNLAKATELA-NAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYN 152 (376)
Q Consensus 75 ~~~~~~~aa~~~-~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 152 (376)
+++++.+-|+.. ++.||..+-+..|-+ +++.-.+.|+++|+.+ ++.+.|-.--+|+ .+
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~----------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt----~~ 239 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL----------------RGEEEIEAVTALAKRFPQARITLDPNGAWS----LD 239 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC----------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCC----HH
Confidence 567776666544 346999998854321 1244466778888765 2333333333343 34
Q ss_pred HHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCccc----HHHHHHHHhhCCCCeEEEecCCCCHHHHHHHHH-
Q 017148 153 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK----YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR- 227 (376)
Q Consensus 153 ~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~----~~~v~~~~~~~~~ipVi~nGgI~s~~da~~~l~- 227 (376)
+.++++ +.+++. +.+|. ..+++-+ ++.++++++. .++||.+.=.+.+..++..+++
T Consensus 240 ~Ai~~~-~~Le~~-~~~iE----------------ePv~~~d~~~~~~~la~Lr~~-~~iPIa~dEs~~~~~~~~~li~~ 300 (441)
T TIGR03247 240 EAIALC-KDLKGV-LAYAE----------------DPCGAEQGYSGREVMAEFRRA-TGLPTATNMIATDWRQMGHALQL 300 (441)
T ss_pred HHHHHH-HHhhhh-hceEe----------------CCCCcccccchHHHHHHHHHh-CCCCEEcCCccCCHHHHHHHHHh
Confidence 444443 334444 44432 0112222 5556677665 4899988778899999999998
Q ss_pred cCcCeeEE
Q 017148 228 KGAHHVMV 235 (376)
Q Consensus 228 ~Gad~Vmi 235 (376)
..+|.+++
T Consensus 301 ~avdi~~~ 308 (441)
T TIGR03247 301 QAVDIPLA 308 (441)
T ss_pred CCCCEEec
Confidence 55777554
No 497
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=86.30 E-value=28 Score=33.57 Aligned_cols=128 Identities=10% Similarity=0.116 Sum_probs=74.8
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEEecCCCCC
Q 017148 68 VLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD 147 (376)
Q Consensus 68 ~vQL~g~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~ 147 (376)
...|...+++.+.+.+.. +.||..+-+..| . .+++.-.+.|+++++.++- .+++|+....
T Consensus 104 ~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG-------------~---~~~~~d~~~v~~vr~~~g~--~~~l~vDaN~ 163 (307)
T TIGR01927 104 VALLPAGDPALLLLRSAK--AEGFRTFKWKVG-------------V---GELAREGMLVNLLLEALPD--KAELRLDANG 163 (307)
T ss_pred eeeccCCCHHHHHHHHHH--hCCCCEEEEEeC-------------C---CChHHHHHHHHHHHHHcCC--CCeEEEeCCC
Confidence 344545667766554443 678888876332 1 1355556778888876632 3344443222
Q ss_pred CccHHHHHHHHHHHhhc---CCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhCCCCeEEEecCCCCHHHHHH
Q 017148 148 HDSYNQLCDFIYKVSSL---SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNA 224 (376)
Q Consensus 148 ~~~~~~~~~~i~~~~e~---~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ipVi~nGgI~s~~da~~ 224 (376)
.-+..+..+++. .+++ .++.+|. . .++. .+.+.++.+. .++||.+.=.+.+.+|+.+
T Consensus 164 ~w~~~~A~~~~~-~l~~~~~~~i~~iE----q------------P~~~--~~~~~~l~~~-~~~Pia~dEs~~~~~d~~~ 223 (307)
T TIGR01927 164 GLSPDEAQQFLK-ALDPNLRGRIAFLE----E------------PLPD--ADEMSAFSEA-TGTAIALDESLWELPQLAD 223 (307)
T ss_pred CCCHHHHHHHHH-hcccccCCCceEEe----C------------CCCC--HHHHHHHHHh-CCCCEEeCCCcCChHHHHH
Confidence 223344444433 3454 5566654 0 0111 2445566555 4899999888999999999
Q ss_pred HHHcC-cCeeEE
Q 017148 225 ALRKG-AHHVMV 235 (376)
Q Consensus 225 ~l~~G-ad~Vmi 235 (376)
+++.+ +|.|++
T Consensus 224 ~~~~~~~d~i~i 235 (307)
T TIGR01927 224 EYGPGWRGALVI 235 (307)
T ss_pred HHhcCCCceEEE
Confidence 99844 577765
No 498
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=86.15 E-value=3.7 Score=39.22 Aligned_cols=84 Identities=8% Similarity=0.036 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCCcccHHHHHHHHhhC-CCCeEEEecCCCCHHHHHHHH---
Q 017148 151 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAAL--- 226 (376)
Q Consensus 151 ~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~-~~ipVi~nGgI~s~~da~~~l--- 226 (376)
.+.+.+.+..+ .+.|++.|.+-|-+......+..+ +.+.+...++.. .++|||+.-+- +.+++.+..
T Consensus 20 ~~~l~~l~~~l-~~~Gv~gi~v~GstGE~~~Ls~eE-------r~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a 90 (289)
T cd00951 20 EDAYRAHVEWL-LSYGAAALFAAGGTGEFFSLTPDE-------YAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAA 90 (289)
T ss_pred HHHHHHHHHHH-HHcCCCEEEECcCCcCcccCCHHH-------HHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHH
Confidence 44444444433 468999999988765433222111 123344444433 26899876555 555554443
Q ss_pred -HcCcCeeEEchHHhhCC
Q 017148 227 -RKGAHHVMVGRAAYQNP 243 (376)
Q Consensus 227 -~~Gad~VmiGRa~l~~P 243 (376)
+.|||++|+-...+..|
T Consensus 91 ~~~Gad~v~~~pP~y~~~ 108 (289)
T cd00951 91 EKAGADGILLLPPYLTEA 108 (289)
T ss_pred HHhCCCEEEECCCCCCCC
Confidence 27999999977766554
No 499
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=86.14 E-value=2.1 Score=40.44 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCCccccCCCCccccccCCHHHHHHHHHHHhcccCccEEEE
Q 017148 74 SNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK 140 (376)
Q Consensus 74 ~~~~~~~~aa~~~~~~G~d~IeiN~gcP~~~v~r~g~yG~~l~~~~~~~~eiv~~v~~~~~~pv~vK 140 (376)
.+.+...+-|+...+.|+|.||||++.+. ...++.+..+|+.+++.++.|+++-
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~-------------~eE~~r~~~~v~~l~~~~~~plsID 75 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAV-------------EEEPETMEWLVETVQEVVDVPLCID 75 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCc-------------hhHHHHHHHHHHHHHHhCCCCEEEe
Confidence 45666777777777889999999987321 2347789999999988888998873
No 500
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=86.14 E-value=13 Score=35.30 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=0.0
Q ss_pred cccccCCHHHHHHHHHHHhcccCccEEEEecCCCCCCccHHHHHHHHHHHhhcCCccEEEEccCccccCCCCCCCCCCCC
Q 017148 112 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP 191 (376)
Q Consensus 112 G~~l~~~~~~~~eiv~~v~~~~~~pv~vKiR~g~~~~~~~~~~~~~i~~~~e~~Gvd~I~vh~r~~~~~g~~~~~~~~~~ 191 (376)
|+.++++.+++.+ ...++.||.+|=-.. .+.+++...+.++.. .|-..|.+--|.... |+.. .
T Consensus 113 gAr~~rntdLL~a-----~~~t~kpV~lKrGqf----~s~~e~~~aae~i~~-~Gn~~vilcERG~~f-gy~~------~ 175 (281)
T PRK12457 113 PAFLARQTDLVVA-----IAKTGKPVNIKKPQF----MSPTQMKHVVSKCRE-AGNDRVILCERGSSF-GYDN------L 175 (281)
T ss_pred CchhhchHHHHHH-----HhccCCeEEecCCCc----CCHHHHHHHHHHHHH-cCCCeEEEEeCCCCC-CCCC------c
Q ss_pred cccHHHHHHHHhhCCCCeEEEecCCC-----------------CHHHHHHHHHcCcCeeEE
Q 017148 192 PLKYEYYYALLRDFPDLTFTLNGGIN-----------------TVDEVNAALRKGAHHVMV 235 (376)
Q Consensus 192 ~~~~~~v~~~~~~~~~ipVi~nGgI~-----------------s~~da~~~l~~Gad~Vmi 235 (376)
.++...+..+++..+++|||..-.=. =+.-+..++..||||+|+
T Consensus 176 ~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~i 236 (281)
T PRK12457 176 VVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFL 236 (281)
T ss_pred ccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Done!