BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017151
         (376 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4
          Length = 3122

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 132/292 (45%), Gaps = 30/292 (10%)

Query: 12   SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKI 71
            SE L  +I  L  E  + RK  E++   ++  + L  ++ +      G+  E + +    
Sbjct: 1867 SEELNDKIDDLSQEIKD-RKLAEKVSQAESHAAQLNDSSAV----LDGILDEAKNISFNA 1921

Query: 72   AACARENSNLQEELSEAYRIKGQLADL-HAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130
             A  +  SN+++ + EA ++  +  DL H A  +         +  +GC+  +F   + +
Sbjct: 1922 TAAFKAYSNIKDYIDEAEKVAKEAKDLAHEATKLATGPRGLLKEDAKGCLQKSFRILNEA 1981

Query: 131  VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ---------------NATLRFD 175
               A   KE E+      N  +TR+E   + N +L +                 A L+  
Sbjct: 1982 KKLANDVKENED----HLNGLKTRIENADARNGDLLRTLNDTLGKLSAIPNDTAAKLQAV 2037

Query: 176  LEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYIS 235
             +K  + N++ K+V+ +  E+  Q+L+ L+ ++      +   +A +    D S +K I+
Sbjct: 2038 KDKARQANDTAKDVLAQITEL-HQNLDGLKKNYNKLADSVAKTNAVV---KDPSKNKIIA 2093

Query: 236  ALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAI 287
              +  ++      + L  KL+   E+E++LKK++ E+ K++I+  +  +N+I
Sbjct: 2094 DADATVKNLEQEADRLIDKLKPIKELEDNLKKNISEI-KELINQARKQANSI 2144


>sp|O75334|LIPA2_HUMAN Liprin-alpha-2 OS=Homo sapiens GN=PPFIA2 PE=1 SV=2
          Length = 1257

 Score = 31.6 bits (70), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 21/146 (14%)

Query: 51  RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAE 110
           R+  +R + LE+E+    Q+I A   +N ++Q +++ +   +G     H    ++ ME  
Sbjct: 196 RVSLERVSALEEELAAANQEIVALREQNVHIQRKMASS---EGSTESEH----LEGMEPG 248

Query: 111 KQV---KFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQK---FNEFQTRLEELSSENIE 164
           ++V   +   G +        +S  E  +  E +EL+ ++     + + RL  LSS   E
Sbjct: 249 QKVHEKRLSNGSI--------DSTDETSQIVELQELLEKQNYEMAQMKERLAALSSRVGE 300

Query: 165 LKKQNATLRFDLEKQEELNESFKEVI 190
           ++++  T R DL K EE+N  ++  I
Sbjct: 301 VEQEAETARKDLIKTEEMNTKYQRDI 326


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.127    0.339 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,319,193
Number of Sequences: 539616
Number of extensions: 5009585
Number of successful extensions: 31917
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 1940
Number of HSP's that attempted gapping in prelim test: 26069
Number of HSP's gapped (non-prelim): 5761
length of query: 376
length of database: 191,569,459
effective HSP length: 119
effective length of query: 257
effective length of database: 127,355,155
effective search space: 32730274835
effective search space used: 32730274835
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)