Query 017151
Match_columns 376
No_of_seqs 15 out of 17
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 06:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09039 hypothetical protein; 97.7 0.0061 1.3E-07 59.1 20.3 160 43-274 17-194 (343)
2 PF00038 Filament: Intermediat 97.4 0.1 2.2E-06 48.1 30.8 117 12-138 13-130 (312)
3 PHA02562 46 endonuclease subun 97.1 0.37 8.1E-06 47.4 27.8 75 15-89 172-247 (562)
4 TIGR02168 SMC_prok_B chromosom 96.7 0.97 2.1E-05 47.1 30.0 17 234-250 967-983 (1179)
5 COG1196 Smc Chromosome segrega 96.0 3.5 7.6E-05 45.8 32.7 78 236-314 946-1024(1163)
6 KOG0161 Myosin class II heavy 96.0 5.4 0.00012 47.7 30.7 182 57-239 1296-1481(1930)
7 TIGR00606 rad50 rad50. This fa 95.9 4.1 8.8E-05 45.8 29.1 290 16-323 842-1153(1311)
8 TIGR02169 SMC_prok_A chromosom 95.8 3.3 7.1E-05 43.7 34.2 30 234-263 953-983 (1164)
9 TIGR02168 SMC_prok_B chromosom 95.5 3.9 8.4E-05 42.8 34.2 25 13-37 673-697 (1179)
10 PF10174 Cast: RIM-binding pro 95.5 5.1 0.00011 43.9 24.9 176 11-186 136-341 (775)
11 PF10174 Cast: RIM-binding pro 95.2 3.7 8E-05 44.9 21.0 117 15-140 1-136 (775)
12 PRK02224 chromosome segregatio 95.1 5.4 0.00012 42.1 32.9 30 233-262 483-512 (880)
13 PF12718 Tropomyosin_1: Tropom 94.7 0.96 2.1E-05 39.5 12.6 125 132-283 7-131 (143)
14 PF08614 ATG16: Autophagy prot 94.6 0.48 1E-05 42.3 10.7 42 80-121 78-119 (194)
15 COG1196 Smc Chromosome segrega 94.6 9.6 0.00021 42.5 31.1 10 351-360 1051-1060(1163)
16 TIGR00606 rad50 rad50. This fa 94.0 14 0.00029 41.8 26.9 46 53-98 222-267 (1311)
17 KOG0161 Myosin class II heavy 93.9 19 0.00041 43.4 28.5 149 51-203 1663-1815(1930)
18 PRK09039 hypothetical protein; 93.9 6.9 0.00015 38.4 20.9 60 15-84 44-103 (343)
19 PRK10884 SH3 domain-containing 93.8 1.2 2.6E-05 41.3 11.8 72 11-98 87-158 (206)
20 PRK03918 chromosome segregatio 93.6 11 0.00023 39.6 28.8 30 133-162 606-635 (880)
21 PF15070 GOLGA2L5: Putative go 93.4 7.9 0.00017 41.3 18.4 84 11-98 44-127 (617)
22 PF12325 TMF_TATA_bd: TATA ele 93.3 2.6 5.7E-05 36.5 12.3 100 43-168 12-111 (120)
23 PRK02224 chromosome segregatio 93.2 13 0.00029 39.2 31.5 35 229-266 657-691 (880)
24 KOG0995 Centromere-associated 92.9 16 0.00034 39.4 20.2 174 50-285 216-389 (581)
25 PF05667 DUF812: Protein of un 92.9 15 0.00032 39.1 24.0 88 239-329 447-534 (594)
26 PRK04863 mukB cell division pr 92.8 25 0.00053 41.3 25.6 45 51-98 282-326 (1486)
27 KOG0612 Rho-associated, coiled 92.7 24 0.00052 41.1 25.6 15 297-311 701-715 (1317)
28 PRK11637 AmiB activator; Provi 91.4 16 0.00034 36.1 21.1 35 52-86 37-71 (428)
29 TIGR02169 SMC_prok_A chromosom 91.4 22 0.00047 37.8 35.7 33 56-88 231-263 (1164)
30 PF15070 GOLGA2L5: Putative go 90.2 29 0.00063 37.2 21.4 68 15-98 2-69 (617)
31 PF04912 Dynamitin: Dynamitin 89.9 13 0.00028 36.6 14.5 138 10-164 87-227 (388)
32 TIGR03185 DNA_S_dndD DNA sulfu 89.5 30 0.00065 36.2 23.6 48 13-63 265-312 (650)
33 PF00261 Tropomyosin: Tropomyo 89.3 18 0.00038 33.4 16.3 52 140-191 177-228 (237)
34 PRK03918 chromosome segregatio 88.9 34 0.00073 36.0 30.7 63 15-77 410-481 (880)
35 PF08232 Striatin: Striatin fa 88.5 1.1 2.4E-05 38.8 5.5 57 113-183 6-62 (134)
36 smart00787 Spc7 Spc7 kinetocho 88.5 27 0.00058 34.4 16.0 125 56-184 138-263 (312)
37 PRK11637 AmiB activator; Provi 88.0 29 0.00064 34.3 25.6 46 55-100 89-135 (428)
38 PRK10929 putative mechanosensi 87.2 63 0.0014 37.2 24.8 57 12-76 67-123 (1109)
39 PF10168 Nup88: Nuclear pore c 86.5 14 0.00031 40.0 13.4 28 294-321 683-710 (717)
40 PF05557 MAD: Mitotic checkpoi 86.5 2.6 5.7E-05 44.3 7.9 124 151-290 501-636 (722)
41 KOG2991 Splicing regulator [RN 85.1 31 0.00067 34.7 13.9 193 14-283 67-266 (330)
42 PRK04778 septation ring format 85.0 51 0.0011 34.2 25.2 82 59-140 253-339 (569)
43 PF12718 Tropomyosin_1: Tropom 83.2 31 0.00068 30.2 14.2 37 53-89 26-62 (143)
44 PF14662 CCDC155: Coiled-coil 82.3 7.3 0.00016 36.7 8.1 70 12-81 97-177 (193)
45 PRK10884 SH3 domain-containing 81.8 25 0.00054 32.8 11.3 26 51-76 89-114 (206)
46 KOG0979 Structural maintenance 81.7 60 0.0013 37.4 15.9 140 12-176 197-341 (1072)
47 PF06657 Cep57_MT_bd: Centroso 81.4 6.7 0.00014 31.6 6.5 55 227-281 12-75 (79)
48 PF08172 CASP_C: CASP C termin 81.4 18 0.0004 34.5 10.5 42 143-184 83-124 (248)
49 KOG0804 Cytoplasmic Zn-finger 81.1 37 0.0008 36.1 13.3 67 108-179 348-415 (493)
50 PF01920 Prefoldin_2: Prefoldi 80.8 10 0.00023 29.5 7.3 74 12-85 14-99 (106)
51 PF01486 K-box: K-box region; 80.2 8.5 0.00019 31.1 6.9 73 15-87 10-100 (100)
52 PF10458 Val_tRNA-synt_C: Valy 80.1 17 0.00037 27.7 8.1 58 15-72 2-63 (66)
53 PF02050 FliJ: Flagellar FliJ 79.5 25 0.00054 26.7 12.2 80 14-98 16-95 (123)
54 PF04849 HAP1_N: HAP1 N-termin 79.3 73 0.0016 32.0 15.7 80 11-98 161-246 (306)
55 PF12240 Angiomotin_C: Angiomo 79.0 50 0.0011 31.6 12.4 48 119-166 100-156 (205)
56 TIGR02680 conserved hypothetic 78.0 1.4E+02 0.0031 34.6 18.9 112 42-161 256-383 (1353)
57 cd00632 Prefoldin_beta Prefold 77.7 37 0.0008 27.7 11.2 56 63-130 7-62 (105)
58 PF06248 Zw10: Centromere/kine 77.4 94 0.002 32.2 17.9 52 12-64 9-62 (593)
59 PF00038 Filament: Intermediat 77.2 62 0.0013 30.1 29.2 77 111-187 61-137 (312)
60 KOG0804 Cytoplasmic Zn-finger 75.7 92 0.002 33.3 14.3 66 49-114 333-399 (493)
61 KOG0250 DNA repair protein RAD 75.1 1.7E+02 0.0037 34.0 25.8 148 101-278 306-454 (1074)
62 PF01920 Prefoldin_2: Prefoldi 74.1 36 0.00078 26.5 8.6 29 228-256 58-86 (106)
63 COG0419 SbcC ATPase involved i 73.6 1.4E+02 0.0031 32.5 30.5 38 60-97 272-309 (908)
64 TIGR01843 type_I_hlyD type I s 73.5 82 0.0018 29.6 22.0 37 50-86 125-161 (423)
65 PF13514 AAA_27: AAA domain 72.6 1.7E+02 0.0036 32.8 20.3 28 12-39 745-772 (1111)
66 PRK11281 hypothetical protein; 72.5 1.9E+02 0.0042 33.4 20.4 162 14-185 125-331 (1113)
67 PF04111 APG6: Autophagy prote 72.2 59 0.0013 31.7 11.4 60 133-197 86-145 (314)
68 PF05700 BCAS2: Breast carcino 71.7 67 0.0014 29.6 11.0 88 17-110 108-195 (221)
69 KOG0994 Extracellular matrix g 71.2 1.7E+02 0.0036 35.1 15.9 59 133-191 1690-1748(1758)
70 PF10186 Atg14: UV radiation r 70.8 81 0.0018 28.4 17.5 72 13-86 23-94 (302)
71 PF09730 BicD: Microtubule-ass 70.3 1.7E+02 0.0037 32.5 15.3 38 53-90 32-69 (717)
72 PF15035 Rootletin: Ciliary ro 69.9 79 0.0017 29.0 11.0 85 11-98 17-114 (182)
73 PF04977 DivIC: Septum formati 69.8 10 0.00022 28.3 4.5 43 53-95 15-57 (80)
74 PF03962 Mnd1: Mnd1 family; I 69.6 73 0.0016 29.1 10.7 48 142-192 106-153 (188)
75 PF05911 DUF869: Plant protein 68.9 2E+02 0.0043 32.2 15.8 56 120-178 111-166 (769)
76 PF05911 DUF869: Plant protein 68.8 1.8E+02 0.0039 32.5 15.2 60 125-184 603-662 (769)
77 KOG4643 Uncharacterized coiled 68.7 47 0.001 38.5 11.0 121 60-187 203-328 (1195)
78 PF04822 Takusan: Takusan; In 68.6 15 0.00032 30.5 5.5 64 10-88 19-82 (84)
79 KOG0996 Structural maintenance 67.4 2.7E+02 0.0058 33.1 23.1 58 64-121 860-924 (1293)
80 PF07139 DUF1387: Protein of u 67.2 1.5E+02 0.0032 30.0 13.9 114 54-203 149-265 (302)
81 PF07200 Mod_r: Modifier of ru 67.0 78 0.0017 26.8 10.4 39 57-98 29-67 (150)
82 PRK04863 mukB cell division pr 66.9 2.8E+02 0.006 33.1 20.1 43 142-184 438-480 (1486)
83 cd00632 Prefoldin_beta Prefold 66.8 62 0.0013 26.4 8.8 76 12-87 15-102 (105)
84 PF10186 Atg14: UV radiation r 66.6 99 0.0022 27.8 14.7 40 146-185 63-102 (302)
85 PF05622 HOOK: HOOK protein; 66.4 1.9 4.1E-05 45.4 0.0 121 65-186 270-403 (713)
86 PF11802 CENP-K: Centromere-as 65.4 1.5E+02 0.0032 29.6 12.4 193 15-221 57-257 (268)
87 PF12128 DUF3584: Protein of u 65.3 2.5E+02 0.0054 32.0 33.4 65 101-165 785-849 (1201)
88 PF15397 DUF4618: Domain of un 64.5 1.5E+02 0.0032 29.1 17.8 40 59-98 78-125 (258)
89 PF12128 DUF3584: Protein of u 64.0 2.7E+02 0.0057 31.9 29.0 86 235-323 603-694 (1201)
90 PF12325 TMF_TATA_bd: TATA ele 63.3 1E+02 0.0022 26.8 12.4 98 61-183 15-112 (120)
91 TIGR01005 eps_transp_fam exopo 63.0 2.1E+02 0.0045 30.3 18.0 35 133-167 346-380 (754)
92 KOG0978 E3 ubiquitin ligase in 62.9 2.5E+02 0.0055 31.2 23.0 189 11-254 424-623 (698)
93 TIGR02338 gimC_beta prefoldin, 62.5 88 0.0019 25.8 10.5 94 62-182 10-103 (110)
94 PLN02939 transferase, transfer 61.7 3E+02 0.0066 31.7 19.2 184 17-203 150-387 (977)
95 PF13851 GAS: Growth-arrest sp 61.3 1.4E+02 0.0029 27.6 16.6 124 45-200 17-141 (201)
96 smart00502 BBC B-Box C-termina 60.5 78 0.0017 24.6 10.2 32 228-259 75-106 (127)
97 TIGR02231 conserved hypothetic 60.4 1.1E+02 0.0023 31.2 11.0 28 53-80 69-96 (525)
98 TIGR03007 pepcterm_ChnLen poly 60.1 1.9E+02 0.0041 28.8 19.1 62 11-74 162-223 (498)
99 COG1579 Zn-ribbon protein, pos 59.8 1.7E+02 0.0038 28.3 16.4 54 131-184 95-148 (239)
100 PF03962 Mnd1: Mnd1 family; I 59.2 1.4E+02 0.0031 27.2 10.8 74 10-87 69-142 (188)
101 PF10473 CENP-F_leu_zip: Leuci 58.5 1.4E+02 0.003 26.8 14.6 28 62-89 52-79 (140)
102 PRK09343 prefoldin subunit bet 58.2 1.2E+02 0.0025 25.9 10.3 94 64-184 16-109 (121)
103 PF07888 CALCOCO1: Calcium bin 57.8 2.8E+02 0.006 30.1 26.3 34 234-270 359-392 (546)
104 PF09304 Cortex-I_coil: Cortex 57.8 1.3E+02 0.0029 26.4 10.5 35 143-177 55-89 (107)
105 PF02403 Seryl_tRNA_N: Seryl-t 57.7 88 0.0019 25.1 8.1 25 13-37 39-63 (108)
106 TIGR02473 flagell_FliJ flagell 57.6 1E+02 0.0023 25.1 12.5 79 15-98 32-111 (141)
107 PRK15178 Vi polysaccharide exp 57.2 1.5E+02 0.0032 31.0 11.5 105 11-137 280-384 (434)
108 PF11629 Mst1_SARAH: C termina 57.1 39 0.00085 26.1 5.6 39 268-306 9-47 (49)
109 PF08826 DMPK_coil: DMPK coile 57.1 53 0.0011 25.9 6.5 38 147-184 19-56 (61)
110 PF13851 GAS: Growth-arrest sp 57.0 1.6E+02 0.0035 27.1 12.7 96 12-115 57-154 (201)
111 KOG0977 Nuclear envelope prote 56.9 2.9E+02 0.0062 30.0 23.8 244 11-307 107-364 (546)
112 PF09789 DUF2353: Uncharacteri 56.8 32 0.0007 34.5 6.5 144 11-196 80-225 (319)
113 PF08317 Spc7: Spc7 kinetochor 56.3 2E+02 0.0043 27.9 16.5 51 12-72 151-201 (325)
114 PF04156 IncA: IncA protein; 56.2 1.4E+02 0.003 26.0 15.4 13 172-184 170-182 (191)
115 PF01017 STAT_alpha: STAT prot 55.9 1E+02 0.0022 27.7 8.9 98 55-165 2-101 (182)
116 KOG2129 Uncharacterized conser 55.0 1.6E+02 0.0036 31.6 11.4 43 20-71 182-224 (552)
117 PF01576 Myosin_tail_1: Myosin 55.0 4 8.7E-05 44.5 0.0 154 16-185 207-367 (859)
118 KOG0976 Rho/Rac1-interacting s 54.2 4.1E+02 0.009 31.0 15.8 143 12-186 346-495 (1265)
119 PF05064 Nsp1_C: Nsp1-like C-t 53.8 46 0.001 28.1 6.1 29 106-135 28-56 (116)
120 PF05308 Mito_fiss_reg: Mitoch 53.0 12 0.00026 36.0 2.8 22 230-251 120-141 (253)
121 KOG0963 Transcription factor/C 52.5 3.6E+02 0.0079 29.8 21.3 213 61-323 120-340 (629)
122 KOG1853 LIS1-interacting prote 51.8 2.8E+02 0.006 28.3 16.0 41 140-180 28-72 (333)
123 PF08317 Spc7: Spc7 kinetochor 51.8 2.4E+02 0.0051 27.4 16.9 99 56-164 143-241 (325)
124 TIGR02338 gimC_beta prefoldin, 51.0 1.4E+02 0.0031 24.6 9.4 78 12-89 19-108 (110)
125 PF06160 EzrA: Septation ring 50.8 3.2E+02 0.0069 28.7 20.4 95 78-180 39-142 (560)
126 PF14193 DUF4315: Domain of un 50.7 38 0.00082 28.0 5.0 38 234-278 3-40 (83)
127 PF09728 Taxilin: Myosin-like 50.6 2.6E+02 0.0056 27.5 22.3 220 59-323 40-282 (309)
128 PF07106 TBPIP: Tat binding pr 50.6 1.7E+02 0.0037 25.5 10.5 77 11-89 73-151 (169)
129 PF08172 CASP_C: CASP C termin 50.5 2.1E+02 0.0047 27.5 10.7 34 149-182 2-35 (248)
130 COG2825 HlpA Outer membrane pr 50.0 2E+02 0.0043 26.1 13.4 27 175-201 117-143 (170)
131 KOG0996 Structural maintenance 49.8 5.2E+02 0.011 30.9 24.3 135 153-303 858-1002(1293)
132 PF07083 DUF1351: Protein of u 49.0 2.2E+02 0.0048 26.4 11.9 109 136-254 61-170 (215)
133 PF15619 Lebercilin: Ciliary p 48.1 2.3E+02 0.005 26.3 19.3 124 14-162 16-148 (194)
134 PF07926 TPR_MLP1_2: TPR/MLP1/ 47.7 1.8E+02 0.0038 24.8 15.3 76 98-176 53-128 (132)
135 COG2433 Uncharacterized conser 47.6 3.1E+02 0.0066 30.5 12.3 34 57-90 417-450 (652)
136 PHA02562 46 endonuclease subun 47.4 3E+02 0.0066 27.5 29.2 58 28-85 178-236 (562)
137 PF04065 Not3: Not1 N-terminal 47.0 96 0.0021 29.8 7.8 82 230-325 127-208 (233)
138 PRK00409 recombination and DNA 47.0 4.3E+02 0.0094 29.1 14.3 62 37-98 493-556 (782)
139 PF08397 IMD: IRSp53/MIM homol 46.8 1.8E+02 0.0038 26.6 9.1 76 247-322 124-211 (219)
140 KOG0642 Cell-cycle nuclear pro 46.6 14 0.00031 39.6 2.5 44 126-181 33-76 (577)
141 PF00170 bZIP_1: bZIP transcri 46.4 81 0.0017 23.6 5.8 37 146-182 26-62 (64)
142 PF06810 Phage_GP20: Phage min 46.2 60 0.0013 28.9 5.9 67 125-195 37-107 (155)
143 PF05529 Bap31: B-cell recepto 46.2 1.4E+02 0.0031 26.4 8.3 38 139-176 154-191 (192)
144 PF04129 Vps52: Vps52 / Sac2 f 45.5 3.7E+02 0.008 27.9 16.1 65 124-191 16-80 (508)
145 PF09789 DUF2353: Uncharacteri 45.3 3.4E+02 0.0074 27.4 21.9 22 16-37 15-36 (319)
146 KOG0612 Rho-associated, coiled 45.2 6.2E+02 0.013 30.4 28.9 240 15-272 470-754 (1317)
147 PF07047 OPA3: Optic atrophy 3 45.0 44 0.00096 28.9 4.8 34 134-167 100-133 (134)
148 KOG0964 Structural maintenance 44.9 6E+02 0.013 30.1 23.3 33 155-187 399-431 (1200)
149 PF05529 Bap31: B-cell recepto 44.9 1.4E+02 0.0029 26.5 7.9 66 16-83 117-182 (192)
150 PF05622 HOOK: HOOK protein; 44.8 7.2 0.00016 41.2 0.0 104 15-118 403-523 (713)
151 PF10474 DUF2451: Protein of u 44.8 2.5E+02 0.0054 26.5 10.0 82 213-300 71-154 (234)
152 KOG4657 Uncharacterized conser 44.4 72 0.0016 31.4 6.6 76 17-98 51-126 (246)
153 PF05667 DUF812: Protein of un 44.4 4.4E+02 0.0096 28.5 18.6 39 206-255 379-417 (594)
154 COG2433 Uncharacterized conser 44.2 4.9E+02 0.011 29.0 17.9 20 230-249 472-491 (652)
155 PF00015 MCPsignal: Methyl-acc 44.1 2E+02 0.0043 24.4 13.5 47 25-71 41-105 (213)
156 PF14131 DUF4298: Domain of un 44.0 75 0.0016 25.9 5.7 65 155-220 2-71 (90)
157 PF09832 DUF2059: Uncharacteri 43.9 63 0.0014 23.8 4.9 42 91-133 5-46 (64)
158 PF02996 Prefoldin: Prefoldin 43.9 69 0.0015 25.8 5.5 79 11-89 4-118 (120)
159 PF04111 APG6: Autophagy prote 43.9 3.2E+02 0.007 26.8 12.9 44 150-193 61-104 (314)
160 PF14389 Lzipper-MIP1: Leucine 43.4 84 0.0018 25.7 5.9 24 232-255 61-84 (88)
161 PF09730 BicD: Microtubule-ass 42.9 1.5E+02 0.0032 33.0 9.3 22 146-167 300-321 (717)
162 COG5185 HEC1 Protein involved 42.9 4.8E+02 0.01 28.6 12.7 54 65-122 267-320 (622)
163 PF09738 DUF2051: Double stran 42.5 3.6E+02 0.0078 26.9 12.1 86 92-191 83-171 (302)
164 PF02388 FemAB: FemAB family; 42.3 1.1E+02 0.0025 30.4 7.8 51 230-284 240-290 (406)
165 PF06698 DUF1192: Protein of u 42.1 28 0.0006 27.4 2.8 37 214-252 12-48 (59)
166 PF01025 GrpE: GrpE; InterPro 42.0 40 0.00086 28.8 4.0 52 234-285 13-66 (165)
167 TIGR02209 ftsL_broad cell divi 41.9 73 0.0016 24.4 5.1 30 58-87 27-56 (85)
168 PF03980 Nnf1: Nnf1 ; InterPr 41.4 54 0.0012 26.7 4.6 47 41-87 59-105 (109)
169 cd00890 Prefoldin Prefoldin is 41.3 1.9E+02 0.004 23.3 7.6 42 48-89 87-128 (129)
170 PF09726 Macoilin: Transmembra 41.2 2.8E+02 0.006 30.5 10.9 97 10-112 538-637 (697)
171 PF06156 DUF972: Protein of un 41.0 54 0.0012 28.0 4.6 38 54-91 14-51 (107)
172 PF04999 FtsL: Cell division p 41.0 73 0.0016 25.3 5.2 43 45-87 25-67 (97)
173 PF07321 YscO: Type III secret 39.3 2.1E+02 0.0045 25.8 8.3 49 50-98 76-124 (152)
174 PF07352 Phage_Mu_Gam: Bacteri 39.2 2.1E+02 0.0046 24.7 8.1 60 142-201 6-66 (149)
175 PRK15041 methyl-accepting chem 39.2 4.4E+02 0.0096 27.0 16.3 30 40-69 391-422 (554)
176 PRK00373 V-type ATP synthase s 38.7 2.6E+02 0.0056 25.5 8.9 36 124-164 22-57 (204)
177 PF09403 FadA: Adhesion protei 38.6 2.8E+02 0.0061 24.5 12.2 61 56-122 28-93 (126)
178 PF02183 HALZ: Homeobox associ 38.6 73 0.0016 23.5 4.4 37 59-98 2-38 (45)
179 PF13094 CENP-Q: CENP-Q, a CEN 38.0 1.6E+02 0.0034 25.6 7.1 54 224-277 19-72 (160)
180 COG2900 SlyX Uncharacterized p 37.8 1.6E+02 0.0035 24.3 6.6 49 150-201 5-60 (72)
181 PRK05431 seryl-tRNA synthetase 37.5 1.4E+02 0.0031 30.2 7.7 22 14-35 39-60 (425)
182 KOG3215 Uncharacterized conser 37.5 4.1E+02 0.0088 26.1 12.3 95 58-167 29-124 (222)
183 KOG0239 Kinesin (KAR3 subfamil 37.4 6E+02 0.013 28.0 15.5 42 12-57 177-218 (670)
184 PRK15422 septal ring assembly 37.3 2.5E+02 0.0055 23.6 8.7 65 155-256 6-70 (79)
185 PF05266 DUF724: Protein of un 37.3 3.4E+02 0.0074 25.1 10.7 71 112-182 87-167 (190)
186 smart00338 BRLZ basic region l 36.5 1.6E+02 0.0034 22.1 6.0 37 146-182 26-62 (65)
187 PF06008 Laminin_I: Laminin Do 36.4 3.6E+02 0.0078 25.1 23.5 58 14-71 42-103 (264)
188 KOG4673 Transcription factor T 36.2 7.2E+02 0.016 28.6 19.2 70 115-184 369-440 (961)
189 PF12761 End3: Actin cytoskele 36.0 3.2E+02 0.0069 26.1 9.2 108 121-274 85-192 (195)
190 PF01813 ATP-synt_D: ATP synth 35.8 1.9E+02 0.0041 26.0 7.5 37 123-164 11-47 (196)
191 PRK14160 heat shock protein Gr 35.7 3.6E+02 0.0079 25.7 9.6 46 230-275 59-105 (211)
192 PF11365 DUF3166: Protein of u 35.6 50 0.0011 28.2 3.6 33 60-93 13-45 (96)
193 PF12711 Kinesin-relat_1: Kine 35.2 57 0.0012 27.4 3.8 42 43-85 13-60 (86)
194 PLN02939 transferase, transfer 35.1 7.8E+02 0.017 28.6 16.4 29 129-157 153-181 (977)
195 KOG0483 Transcription factor H 35.0 47 0.001 31.2 3.6 32 56-87 106-137 (198)
196 KOG2896 UV radiation resistanc 34.7 1.6E+02 0.0034 30.7 7.5 72 236-312 121-196 (377)
197 PRK10636 putative ABC transpor 34.3 1.6E+02 0.0036 30.9 7.8 68 18-88 564-631 (638)
198 PRK01156 chromosome segregatio 34.1 6.4E+02 0.014 27.3 27.3 25 231-255 468-492 (895)
199 KOG0971 Microtubule-associated 33.8 8.7E+02 0.019 28.8 18.9 185 1-191 322-542 (1243)
200 TIGR00414 serS seryl-tRNA synt 33.3 2.2E+02 0.0048 28.8 8.3 22 14-35 41-62 (418)
201 TIGR00309 V_ATPase_subD H(+)-t 33.0 3.9E+02 0.0084 24.5 13.0 36 124-164 20-55 (209)
202 PF13863 DUF4200: Domain of un 33.0 2.7E+02 0.0059 22.7 13.4 74 89-162 24-97 (126)
203 PF13949 ALIX_LYPXL_bnd: ALIX 32.9 3.9E+02 0.0085 24.5 13.9 75 11-87 145-221 (296)
204 KOG0946 ER-Golgi vesicle-tethe 32.8 8.5E+02 0.018 28.4 15.2 136 57-193 666-832 (970)
205 PF15233 SYCE1: Synaptonemal c 32.5 2.7E+02 0.0058 25.5 7.8 105 140-244 7-131 (134)
206 PF14662 CCDC155: Coiled-coil 32.3 4.6E+02 0.0099 25.1 17.0 146 10-183 22-188 (193)
207 PF09755 DUF2046: Uncharacteri 32.3 5.6E+02 0.012 26.1 19.9 76 10-96 77-169 (310)
208 KOG3958 Putative dynamitin [Cy 32.2 2.9E+02 0.0063 28.6 8.8 42 10-51 87-133 (371)
209 PF15397 DUF4618: Domain of un 32.1 5.1E+02 0.011 25.6 15.0 86 154-257 7-106 (258)
210 PRK14143 heat shock protein Gr 32.1 2.2E+02 0.0047 27.4 7.6 46 230-275 65-111 (238)
211 PF06705 SF-assemblin: SF-asse 31.9 4.2E+02 0.0091 24.6 18.9 78 135-215 26-104 (247)
212 PRK13694 hypothetical protein; 31.8 1.7E+02 0.0036 24.8 6.0 35 11-45 13-47 (83)
213 KOG0976 Rho/Rac1-interacting s 31.7 4.4E+02 0.0095 30.8 10.8 70 231-308 455-524 (1265)
214 COG1711 DNA replication initia 31.4 1.8E+02 0.0039 28.3 6.9 84 231-325 31-115 (223)
215 PF07106 TBPIP: Tat binding pr 31.4 3.5E+02 0.0077 23.5 8.8 63 57-119 74-138 (169)
216 PLN02678 seryl-tRNA synthetase 31.4 2.1E+02 0.0045 29.8 7.8 21 15-35 45-65 (448)
217 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.3 3.3E+02 0.0071 23.2 8.0 73 12-85 54-128 (132)
218 PF09397 Ftsk_gamma: Ftsk gamm 30.9 34 0.00073 27.1 1.7 27 233-259 8-34 (65)
219 PF12808 Mto2_bdg: Micro-tubul 30.9 73 0.0016 24.6 3.5 26 229-254 26-51 (52)
220 PF10211 Ax_dynein_light: Axon 30.8 3.2E+02 0.0069 25.0 8.2 63 230-302 125-187 (189)
221 PF10473 CENP-F_leu_zip: Leuci 30.8 4E+02 0.0087 24.0 16.4 39 55-96 24-62 (140)
222 TIGR02231 conserved hypothetic 30.6 3.3E+02 0.0071 27.8 9.0 26 11-36 72-97 (525)
223 PF07889 DUF1664: Protein of u 30.5 3.9E+02 0.0084 23.7 9.6 88 223-328 28-125 (126)
224 PRK14147 heat shock protein Gr 30.2 2.2E+02 0.0047 26.0 7.0 45 234-278 20-65 (172)
225 cd07605 I-BAR_IMD Inverse (I)- 30.1 4.9E+02 0.011 24.8 9.8 93 231-323 107-216 (223)
226 PF12001 DUF3496: Domain of un 30.0 3.8E+02 0.0083 23.5 8.2 34 141-174 45-78 (111)
227 smart00843 Ftsk_gamma This dom 30.0 50 0.0011 26.2 2.5 28 232-259 6-33 (63)
228 PRK06975 bifunctional uroporph 29.6 7.4E+02 0.016 26.7 13.7 33 47-79 336-370 (656)
229 KOG0239 Kinesin (KAR3 subfamil 29.5 8E+02 0.017 27.0 12.2 99 147-258 221-319 (670)
230 KOG2685 Cystoskeletal protein 29.5 7.1E+02 0.015 26.5 19.4 107 204-310 192-303 (421)
231 COG3707 AmiR Response regulato 29.4 93 0.002 29.5 4.6 42 53-96 123-173 (194)
232 PF02388 FemAB: FemAB family; 29.0 1.5E+02 0.0033 29.6 6.2 134 83-233 194-328 (406)
233 smart00353 HLH helix loop heli 28.7 76 0.0017 22.1 3.1 40 191-242 13-52 (53)
234 PF04012 PspA_IM30: PspA/IM30 28.6 4.3E+02 0.0094 23.7 15.3 27 97-123 84-110 (221)
235 PF06632 XRCC4: DNA double-str 28.4 5.8E+02 0.013 25.8 10.2 29 15-43 52-80 (342)
236 PF12341 DUF3639: Protein of u 28.0 5.3 0.00012 27.2 -2.7 16 41-56 9-24 (27)
237 smart00340 HALZ homeobox assoc 28.0 88 0.0019 23.9 3.4 33 61-93 4-36 (44)
238 PRK09841 cryptic autophosphory 27.6 6.5E+02 0.014 27.1 10.9 90 11-110 305-397 (726)
239 COG3074 Uncharacterized protei 27.5 2.8E+02 0.0061 23.3 6.5 50 132-188 25-74 (79)
240 PF06785 UPF0242: Uncharacteri 27.4 6.1E+02 0.013 26.7 10.2 51 53-103 139-189 (401)
241 PF11932 DUF3450: Protein of u 27.4 5E+02 0.011 24.0 13.5 24 230-253 75-98 (251)
242 PF04849 HAP1_N: HAP1 N-termin 26.8 6.8E+02 0.015 25.4 16.7 23 64-86 162-184 (306)
243 KOG4117 Heat shock factor bind 26.7 86 0.0019 25.9 3.4 28 14-42 38-65 (73)
244 PF14552 Tautomerase_2: Tautom 26.7 53 0.0011 26.5 2.2 36 191-226 46-82 (82)
245 PF09311 Rab5-bind: Rabaptin-l 26.6 34 0.00075 30.6 1.3 43 47-89 7-49 (181)
246 PF09787 Golgin_A5: Golgin sub 26.6 7.4E+02 0.016 25.7 20.5 223 42-282 174-411 (511)
247 PF08077 Cm_res_leader: Chlora 26.3 9.9 0.00022 23.8 -1.5 11 41-51 2-13 (17)
248 PF12709 Kinetocho_Slk19: Cent 26.1 1.9E+02 0.0041 24.5 5.4 40 150-189 46-85 (87)
249 PRK14146 heat shock protein Gr 26.1 2.9E+02 0.0063 26.2 7.2 45 234-278 56-101 (215)
250 PF14197 Cep57_CLD_2: Centroso 26.0 3.4E+02 0.0073 21.6 7.8 32 59-90 2-33 (69)
251 PF04977 DivIC: Septum formati 26.0 2.4E+02 0.0052 20.9 5.5 31 149-179 20-50 (80)
252 PRK14145 heat shock protein Gr 25.6 3.9E+02 0.0085 25.2 7.9 52 226-277 39-91 (196)
253 PF05308 Mito_fiss_reg: Mitoch 25.5 64 0.0014 31.1 2.9 22 54-75 121-142 (253)
254 PLN02320 seryl-tRNA synthetase 25.5 2.4E+02 0.0053 29.9 7.3 22 14-35 104-125 (502)
255 PTZ00397 macrophage migration 25.4 67 0.0015 26.2 2.7 26 204-229 89-114 (116)
256 TIGR00019 prfA peptide chain r 25.3 2.8E+02 0.0062 28.3 7.5 94 142-258 3-101 (360)
257 PF04782 DUF632: Protein of un 24.9 3.8E+02 0.0083 26.7 8.1 34 240-273 130-163 (312)
258 PRK13729 conjugal transfer pil 24.8 2.4E+02 0.0053 30.1 7.1 65 116-190 54-120 (475)
259 PF04420 CHD5: CHD5-like prote 24.6 1.5E+02 0.0033 26.2 4.9 53 14-71 37-89 (161)
260 PLN03188 kinesin-12 family pro 24.4 1.3E+03 0.029 27.9 18.3 63 121-185 1157-1236(1320)
261 KOG3091 Nuclear pore complex, 24.4 9.1E+02 0.02 26.3 11.1 73 15-106 374-448 (508)
262 PF15035 Rootletin: Ciliary ro 24.3 3.4E+02 0.0074 25.0 7.2 43 144-186 65-114 (182)
263 KOG3863 bZIP transcription fac 24.3 1.5E+02 0.0032 32.5 5.5 65 57-125 513-577 (604)
264 PF05377 FlaC_arch: Flagella a 24.2 3.3E+02 0.0072 21.4 6.0 46 148-197 2-47 (55)
265 PLN03188 kinesin-12 family pro 24.0 1.3E+03 0.029 27.8 19.5 98 153-258 1079-1192(1320)
266 PRK14153 heat shock protein Gr 24.0 2.8E+02 0.006 26.1 6.6 50 130-184 22-71 (194)
267 PF11500 Cut12: Spindle pole b 24.0 5.7E+02 0.012 23.5 8.7 64 99-166 71-139 (152)
268 PF11221 Med21: Subunit 21 of 23.9 4E+02 0.0086 23.2 7.2 75 13-90 65-139 (144)
269 COG5509 Uncharacterized small 23.8 89 0.0019 25.5 2.9 27 45-73 24-50 (65)
270 PF08826 DMPK_coil: DMPK coile 23.8 3.7E+02 0.008 21.2 6.3 40 134-173 20-59 (61)
271 TIGR03752 conj_TIGR03752 integ 23.8 7.7E+02 0.017 26.5 10.4 76 144-255 64-139 (472)
272 PF09006 Surfac_D-trimer: Lung 23.8 1.1E+02 0.0024 23.5 3.3 24 234-257 1-24 (46)
273 PF06156 DUF972: Protein of un 23.7 3.4E+02 0.0073 23.2 6.6 41 144-184 13-53 (107)
274 PF05823 Gp-FAR-1: Nematode fa 23.3 3.5E+02 0.0077 24.0 6.9 104 204-323 19-129 (154)
275 PF07763 FEZ: FEZ-like protein 23.2 5.6E+02 0.012 25.3 8.7 110 38-167 127-237 (244)
276 PF11559 ADIP: Afadin- and alp 23.2 4.7E+02 0.01 22.3 9.6 67 234-300 68-134 (151)
277 PF10073 DUF2312: Uncharacteri 23.2 1.4E+02 0.003 24.7 4.0 34 12-45 6-39 (74)
278 TIGR01069 mutS2 MutS2 family p 23.1 1.1E+03 0.023 26.3 13.3 40 257-296 692-731 (771)
279 PF00170 bZIP_1: bZIP transcri 23.0 2.8E+02 0.0062 20.6 5.4 35 152-186 25-59 (64)
280 PF01166 TSC22: TSC-22/dip/bun 23.0 70 0.0015 25.6 2.2 33 235-268 10-42 (59)
281 COG1579 Zn-ribbon protein, pos 22.9 7.1E+02 0.015 24.3 16.5 78 229-306 86-173 (239)
282 PRK07720 fliJ flagellar biosyn 22.9 4.7E+02 0.01 22.1 13.5 80 14-98 34-114 (146)
283 PF13166 AAA_13: AAA domain 22.9 8.8E+02 0.019 25.3 20.7 35 35-69 259-294 (712)
284 PRK04778 septation ring format 22.8 9E+02 0.019 25.4 25.1 28 155-182 312-339 (569)
285 COG0172 SerS Seryl-tRNA synthe 22.8 3.1E+02 0.0067 28.8 7.3 22 13-34 39-60 (429)
286 PF07888 CALCOCO1: Calcium bin 22.7 1E+03 0.022 26.0 28.4 23 14-36 140-162 (546)
287 PF05377 FlaC_arch: Flagella a 22.7 1.5E+02 0.0033 23.2 4.0 27 234-260 16-42 (55)
288 KOG1962 B-cell receptor-associ 22.6 7.1E+02 0.015 24.1 9.7 95 118-258 118-212 (216)
289 PTZ00046 rifin; Provisional 22.4 2E+02 0.0043 29.6 5.8 38 140-177 64-108 (358)
290 PF11101 DUF2884: Protein of u 22.3 4.9E+02 0.011 24.4 8.0 41 29-69 137-181 (229)
291 PF10351 Apt1: Golgi-body loca 22.2 2.7E+02 0.0059 27.9 6.6 37 240-276 91-127 (457)
292 PRK00888 ftsB cell division pr 22.2 1.9E+02 0.0042 24.2 4.8 31 56-86 28-58 (105)
293 PRK14154 heat shock protein Gr 22.0 2.1E+02 0.0046 27.2 5.6 44 232-275 52-96 (208)
294 PF06305 DUF1049: Protein of u 22.0 1.2E+02 0.0025 22.4 3.1 22 15-36 46-67 (68)
295 cd00890 Prefoldin Prefoldin is 21.9 4.2E+02 0.0092 21.3 9.9 28 228-255 83-110 (129)
296 KOG3564 GTPase-activating prot 21.7 2.1E+02 0.0045 31.3 5.9 71 219-289 40-113 (604)
297 PF05557 MAD: Mitotic checkpoi 21.7 7.4E+02 0.016 26.6 10.0 24 15-38 508-531 (722)
298 KOG0999 Microtubule-associated 21.6 1.2E+03 0.026 26.3 21.5 209 57-292 10-240 (772)
299 PF09726 Macoilin: Transmembra 21.5 1.1E+03 0.024 26.0 24.1 39 233-274 595-633 (697)
300 KOG1760 Molecular chaperone Pr 21.0 6.5E+02 0.014 23.0 10.9 30 228-257 77-106 (131)
301 KOG0837 Transcriptional activa 21.0 2.9E+02 0.0064 27.8 6.5 47 140-186 214-260 (279)
302 PF10226 DUF2216: Uncharacteri 21.0 7.6E+02 0.017 23.8 14.0 118 11-172 17-141 (195)
303 PF13234 rRNA_proc-arch: rRNA- 20.9 60 0.0013 30.1 1.7 58 58-118 18-75 (268)
304 PF05130 FlgN: FlgN protein; 20.9 1.9E+02 0.0042 22.7 4.4 18 13-30 47-64 (143)
305 PF05700 BCAS2: Breast carcino 20.5 6.4E+02 0.014 23.3 8.2 28 11-38 137-164 (221)
306 PF14989 CCDC32: Coiled-coil d 20.4 84 0.0018 28.7 2.5 18 231-248 55-72 (148)
307 KOG3647 Predicted coiled-coil 20.4 8.8E+02 0.019 25.0 9.6 89 11-119 134-222 (338)
308 PRK14151 heat shock protein Gr 20.3 4.5E+02 0.0098 24.1 7.1 47 230-276 18-65 (176)
309 KOG0979 Structural maintenance 20.2 1.5E+03 0.032 26.9 20.9 154 144-323 683-848 (1072)
310 PF08651 DASH_Duo1: DASH compl 20.2 4.3E+02 0.0092 21.5 6.2 46 235-283 1-49 (78)
No 1
>PRK09039 hypothetical protein; Validated
Probab=97.74 E-value=0.0061 Score=59.09 Aligned_cols=160 Identities=22% Similarity=0.292 Sum_probs=93.9
Q ss_pred CchHHHhhHH-----------------HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 43 PSYLAVATRM-----------------HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK 105 (376)
Q Consensus 43 pgyl~vATRM-----------------~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~K 105 (376)
||||++-|-+ +++-..++++++..|+.+++. |+++-+-+.+.
T Consensus 17 pg~vd~~~~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~---------------------L~e~L~le~~~ 75 (343)
T PRK09039 17 PGFVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAE---------------------LADLLSLERQG 75 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 9999877654 456777777777777777655 55555555556
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 017151 106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (376)
Q Consensus 106 N~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~ 185 (376)
+..++..+.=.+.....|-++|+. .| ..-. .......+.+.|+..++..+..++......+.++..+..|.+.
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~--Le--~~~~---~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~a 148 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSR--LQ--ALLA---ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAA 148 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH--HH--HHHh---hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666665555555555555454431 11 1000 0112234566777777777777777777777777777777764
Q ss_pred HHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhh-hhhHHHHHH
Q 017151 186 FKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL-RMGLEIENH 264 (376)
Q Consensus 186 ~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL-R~glEIEnH 264 (376)
+.+- +++||.+++.........|.++ ..|-+|+++
T Consensus 149 Lr~Q--------------------------------------------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 149 LRRQ--------------------------------------------LAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHH--------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 5555555555555554444443 235556666
Q ss_pred hHHhHHHHHH
Q 017151 265 LKKSVRELEK 274 (376)
Q Consensus 265 Lkk~~r~LEk 274 (376)
|.+++..|+.
T Consensus 185 ~~~~~~~l~~ 194 (343)
T PRK09039 185 LAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 2
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.42 E-value=0.1 Score=48.15 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
-++.+.||..||.+...|..+|..+---.+. |+-+ -...+.+|..|+.++..++.++-.|+-++..+..
T Consensus 13 la~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~----------~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 13 LASYIEKVRFLEQENKRLESEIEELREKKGEEVSRI----------KEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHH----------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCccc----------ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 4677899999999999999999999876422 3211 2456888999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhH
Q 017151 91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 138 (376)
Q Consensus 91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaK 138 (376)
--..+-.-|..+......+|.++.=+..-+-.+.+.|...=-+++-.+
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~ 130 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLK 130 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHH
Confidence 777776678888999999999998888888777777766555555554
No 3
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.05 E-value=0.37 Score=47.42 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (376)
+..++.+++.+-+.|+..|+.+=-+.++ +.++.....-....++.++.+++.+..+....-.+-.+|+++|.+.+
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666444443 45555555555667777888888888777777777777777777664
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.72 E-value=0.97 Score=47.09 Aligned_cols=17 Identities=6% Similarity=0.198 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhHHH
Q 017151 234 ISALEDELEKTRSSVEN 250 (376)
Q Consensus 234 isaLEee~e~lr~si~~ 250 (376)
|..|+.+++.+.+.|+.
T Consensus 967 ~~~l~~~i~~lg~aiee 983 (1179)
T TIGR02168 967 EEEARRRLKRLENKIKE 983 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.98 E-value=3.5 Score=45.80 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhHHHHhh-hhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhh
Q 017151 236 ALEDELEKTRSSVENLQS-KLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKS 314 (376)
Q Consensus 236 aLEee~e~lr~si~~LQs-kLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e~~s~iks 314 (376)
.++.+++.+...+..|-. |++ .+|-=..++++...|..+..-.++=...=...+..+...-|...|.....=..+++.
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~-Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~ 1024 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLR-AIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSE 1024 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444421 222 233333455555555555544444443333334444444444444443333333333
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.95 E-value=5.4 Score=47.71 Aligned_cols=182 Identities=22% Similarity=0.261 Sum_probs=113.6
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH-HH
Q 017151 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME-AE 135 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmE-aE 135 (376)
-.+|+.+|+.++.++..-+|.+++|...+..+-+=+..|-+.+--+...-.++++++.==-+-++++-+.=+..+.. .|
T Consensus 1296 ~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~e 1375 (1930)
T KOG0161|consen 1296 KQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLE 1375 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999998888777777776666666666677777665555555554444444443 34
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchh---
Q 017151 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKC--- 212 (376)
Q Consensus 136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc--- 212 (376)
.+.|.-...-+.+.+.+++++.+...+.+..+..-.||.++..+.--.+....++. |.+..+...+-.-..|..++
T Consensus 1376 elee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~-~le~k~k~f~k~l~e~k~~~e~l 1454 (1930)
T KOG0161|consen 1376 ELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVA-ALEKKQKRFEKLLAEWKKKLEKL 1454 (1930)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455567788888899988888888877777777666554433332222111 22333333333333454444
Q ss_pred hhhcccccccccccCcchhHhHHHHHH
Q 017151 213 ACLLLDSAEMWSFNDTSTSKYISALED 239 (376)
Q Consensus 213 ~~Ll~ds~~~WSfn~tStskyisaLEe 239 (376)
+..++.....|.=-+|+.-++--+||+
T Consensus 1455 ~~Eld~aq~e~r~~~tel~kl~~~lee 1481 (1930)
T KOG0161|consen 1455 QAELDAAQRELRQLSTELQKLKNALEE 1481 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555666666666665555555444
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.89 E-value=4.1 Score=45.82 Aligned_cols=290 Identities=12% Similarity=0.085 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH--
Q 017151 16 MARIQQLEHERDELRKDIEQL---CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR-- 90 (376)
Q Consensus 16 ~aRI~qLEhERDELrKDIEqL---CMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR-- 90 (376)
.+.+..+..+++.+.+.|.+| .+.- |.-=+.++.++- +-..|+-+|+.|+..+..+..+-..+.+++...-.
T Consensus 842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el-~~~klkl~~~l~--~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 842 VSKIELNRKLIQDQQEQIQHLKSKTNEL-KSEKLQIGTNLQ--RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 333444455555556666666 5542 222233333222 44556666666666666665555555554443322
Q ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH---------HHHhhhhhh--hHHHHH----hHHHHHHHHHHHHHHHH
Q 017151 91 --IKGQLADLHAAEVIKNMEAEKQVKFFQGCMA---------AAFAERDNS--VMEAEK----AKEKEELMSQKFNEFQT 153 (376)
Q Consensus 91 --iK~qLadLh~ae~~KN~e~EkqVkFfQs~vA---------~AFAERD~s--lmEaEK----aKE~Ee~m~qk~~e~e~ 153 (376)
..+.+.++-...-.+..++...+.=|+..+- ..|..+|.. |-+++. ....-+.+-+....+..
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~ 998 (1311)
T TIGR00606 919 EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINE 998 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333344445555554444432 223333321 111111 11111333344555555
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHh
Q 017151 154 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKY 233 (376)
Q Consensus 154 R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStsky 233 (376)
.+..+...+.++......++..+..+..+++.. .+ +....+++.....- +. .-+-.+ ...|.=--.+.+.=
T Consensus 999 ~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~-el-----~~eI~~l~~~~~~~-~~-~~~~~e-~~~l~~~~~~l~~~ 1069 (1311)
T TIGR00606 999 DMRLMRQDIDTQKIQERWLQDNLTLRKRENELK-EV-----EEELKQHLKEMGQM-QV-LQMKQE-HQKLEENIDLIKRN 1069 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHhhc-cH-HHHHHH-HHHHHHHHHHHHHH
Confidence 555555666666666666655555553222210 00 01111111100000 00 000000 00010000122223
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhh
Q 017151 234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIK 313 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e~~s~ik 313 (376)
.+++..++..+.+.|..|+..|.= =--+++..=-++..+==+....++.+|.+||...=.-||+.=..-=..|-
T Consensus 1070 ~a~l~g~~k~le~qi~~l~~eL~e------~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n 1143 (1311)
T TIGR00606 1070 HVLALGRQKGYEKEIKHFKKELRE------PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEIN 1143 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666655555421 11223333333333444556677888888887777777776555555566
Q ss_pred hhHHHHHhhh
Q 017151 314 SISDVIEEKT 323 (376)
Q Consensus 314 s~v~~i~ekl 323 (376)
.||+.+=.++
T Consensus 1144 ~~~~~~w~~~ 1153 (1311)
T TIGR00606 1144 KIIRDLWRST 1153 (1311)
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.76 E-value=3.3 Score=43.71 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhHHHHhh-hhhhhHHHHH
Q 017151 234 ISALEDELEKTRSSVENLQS-KLRMGLEIEN 263 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQs-kLR~glEIEn 263 (376)
++.++.++..+++.++++-+ |+..--+.+.
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~ 983 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEE 983 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 45788888888888887765 4444344443
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.50 E-value=3.9 Score=42.79 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 13 EALMARIQQLEHERDELRKDIEQLC 37 (376)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqLC 37 (376)
..+...+..|+.+.+++++.++.+-
T Consensus 673 ~~l~~e~~~l~~~~~~l~~~l~~~~ 697 (1179)
T TIGR02168 673 LERRREIEELEEKIEELEEKIAELE 697 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555443
No 10
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.47 E-value=5.1 Score=43.93 Aligned_cols=176 Identities=21% Similarity=0.261 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCc-hHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCM--QQAGPS-YLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCM--QQaGpg-yl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (376)
..+.+..||.-++.++|...-.|+.|=- |..||+ +-...+.-...|.++++..+..|+..|.---.++.-+.++|-.
T Consensus 136 ~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~ 215 (775)
T PF10174_consen 136 TLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHR 215 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4677888899999999999999988754 777844 5566666677799999999988888887777777666666666
Q ss_pred HHHHHHH------HHHHHH------HHHHhhH-HHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHH---------
Q 017151 88 AYRIKGQ------LADLHA------AEVIKNM-EAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMS--------- 145 (376)
Q Consensus 88 AYRiK~q------LadLh~------ae~~KN~-e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~--------- 145 (376)
.|....- +-.+.- +++.++. .+|-++.-.++.++.+=++||--.-+.|--+-.-..|-
T Consensus 216 ~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~e 295 (775)
T PF10174_consen 216 RLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLE 295 (775)
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5543211 111111 3333332 25677777777777777777766333332222222222
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhH
Q 017151 146 -----QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186 (376)
Q Consensus 146 -----qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~ 186 (376)
+.+..++.|++.+.+...+.+.=-+.|+.++.....+.+.+
T Consensus 296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~L 341 (775)
T PF10174_consen 296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEML 341 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344445555555555555555555555555555555533
No 11
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.17 E-value=3.7 Score=44.94 Aligned_cols=117 Identities=27% Similarity=0.405 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHH---HhhhhhHH----HHHHHHHHH-------HHhhhhhcc
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHF---QRTAGLEQ----EIEILKQKI-------AACARENSN 80 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~---QRtA~LEQ----eIE~Lkkkl-------~~c~rEn~n 80 (376)
|.+++..|+.|.|-|++++|-. +.-.|+.--++-| .|+ -|..++.. ++..++.++ ...-.+-++
T Consensus 1 Lq~ql~~~q~E~e~L~~ele~~-~~~l~~~~~~i~~-fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~ 78 (775)
T PF10174_consen 1 LQAQLERLQRENERLRRELERK-QSKLGSSMNSIKT-FWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQA 78 (775)
T ss_pred CccHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhHhc-ccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 3468889999999999999987 4444444444333 222 22233322 233444444 444445567
Q ss_pred hHHHHHHH----HHHHHHHHHHHH-HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHH
Q 017151 81 LQEELSEA----YRIKGQLADLHA-AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEK 140 (376)
Q Consensus 81 LQEELsEA----YRiK~qLadLh~-ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~ 140 (376)
||+|| .+ ||+..++-.-.+ .+-... +++ =+|-+.+..||||....|.+.....
T Consensus 79 LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~--ld~----~~~q~~rl~~E~er~~~El~~lr~~ 136 (775)
T PF10174_consen 79 LQEEL-RAQRELNRLQQELEKAQYEFESLQE--LDK----AQEQFERLQAERERLQRELERLRKT 136 (775)
T ss_pred HHHHH-HHhhHHHHHHHHhhhcccccchhhh--hhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888 55 555555443311 111111 222 3677888899999999998887733
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=95.09 E-value=5.4 Score=42.05 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhhhhHHHH
Q 017151 233 YISALEDELEKTRSSVENLQSKLRMGLEIE 262 (376)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR~glEIE 262 (376)
-+..|+.+++.++..++.+.+.+...-+++
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~ 512 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIE 512 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777776666666655544444
No 13
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.74 E-value=0.96 Score=39.49 Aligned_cols=125 Identities=26% Similarity=0.343 Sum_probs=89.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccch
Q 017151 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK 211 (376)
Q Consensus 132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~K 211 (376)
+|++-|-++-+..-+++.+++.|....+..+.....-|..|..++..+.++......-+.
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le-------------------- 66 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE-------------------- 66 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 456666666677778899999999988888888888888888888888777764333322
Q ss_pred hhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 017151 212 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 283 (376)
Q Consensus 212 c~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i 283 (376)
++...-+=++ +..+-|.-||++++.....+.-..-|||=.=-==.|+-|+|..||.+..-|..=+
T Consensus 67 ------e~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 67 ------ESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY 131 (143)
T ss_pred ------hHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 1110000001 5788999999999999999988888888332223499999999999887776544
No 14
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.60 E-value=0.48 Score=42.26 Aligned_cols=42 Identities=38% Similarity=0.366 Sum_probs=2.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH
Q 017151 80 NLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA 121 (376)
Q Consensus 80 nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA 121 (376)
.||+||+++||.+++++..-...-.++.++++...=-+..++
T Consensus 78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~ 119 (194)
T PF08614_consen 78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLA 119 (194)
T ss_dssp ------------------------------------HHHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhHHHHHHHHH
Confidence 489999999999999997655555555555555444333333
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.56 E-value=9.6 Score=42.48 Aligned_cols=10 Identities=0% Similarity=0.155 Sum_probs=4.3
Q ss_pred ccccccCCCC
Q 017151 351 DVHINNDADT 360 (376)
Q Consensus 351 DvHvs~d~~~ 360 (376)
.+|+.|..++
T Consensus 1051 ei~a~ppgK~ 1060 (1163)
T COG1196 1051 EISARPPGKK 1060 (1163)
T ss_pred EEEEECCCCC
Confidence 3444444443
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.95 E-value=14 Score=41.83 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=27.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 017151 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (376)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (376)
.-.+.+.++..++.++.....|..+-..+++.+.+.+.+...+..+
T Consensus 222 ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l 267 (1311)
T TIGR00606 222 IRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666666666666666666555555444
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.95 E-value=19 Score=43.43 Aligned_cols=149 Identities=22% Similarity=0.268 Sum_probs=109.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHhhhhHHHHHhhh
Q 017151 51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLH---AAEVIKNMEAEKQVKFFQGCMAAAFAER 127 (376)
Q Consensus 51 RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh---~ae~~KN~e~EkqVkFfQs~vA~AFAER 127 (376)
+.--+|.++|+.|++.|+.++++..|.+.++..||.|+ ...+..++ .+-.+...++|..|.-+|+-++.+..+=
T Consensus 1663 ~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~---~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~ 1739 (1930)
T KOG0161|consen 1663 AEAERRLAALQAELEELREKLEALERARRQAELELEEL---AERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSEL 1739 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999999999999999999875 56777777 4678889999999999999998877665
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH-hHHHHHHHHHHHhhhhhhh
Q 017151 128 DNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE-SFKEVINKFYEIRQQSLEV 203 (376)
Q Consensus 128 D~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e-~~~kVi~KFyeiR~~~~e~ 203 (376)
-.+.=.+-||--.-.-|..+++.=++..--+++.-....+.|.+||..|.+++.-+- .+.+.|.| ++-|-+++|.
T Consensus 1740 ~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~-Learir~LE~ 1815 (1930)
T KOG0161|consen 1740 RAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAK-LEARIRELES 1815 (1930)
T ss_pred HhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH-HHHHHHHHHH
Confidence 444444444444444455666666666666666667777788888888877776543 34455664 4556566654
No 18
>PRK09039 hypothetical protein; Validated
Probab=93.92 E-value=6.9 Score=38.38 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEE 84 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEE 84 (376)
|...|..++.|-++|..-|-. ++..-.|=-+|++.|+++|..++.++....+.+.-|+.-
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~----------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~ 103 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE----------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888899999988876 777788888999999999999999988776666544443
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.76 E-value=1.2 Score=41.30 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
...++..|+.+||.|-.+|+.....+=-+ +.+|++.|++.+....+.......+|..|.++|..
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~--- 150 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNNIDNT-------------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV--- 150 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34567788889999988888877774322 67999999999999999999999999999999987
Q ss_pred HHHHHHHH
Q 017151 91 IKGQLADL 98 (376)
Q Consensus 91 iK~qLadL 98 (376)
.+..+..|
T Consensus 151 ~~~~~~~l 158 (206)
T PRK10884 151 AQKKVDAA 158 (206)
T ss_pred HHHHHHHH
Confidence 35555544
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=93.62 E-value=11 Score=39.58 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=14.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 133 EAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (376)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~ 162 (376)
+.+.+..+-+...+++.+.+..+.+++..+
T Consensus 606 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~i 635 (880)
T PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEEL 635 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445444444455555555544444444
No 21
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.38 E-value=7.9 Score=41.33 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
..+..+.||+.||+.--+|+.-+...= ....|.-.+..-.=+-.++..|.++++.|..++.+-+++|..|-.-.. .
T Consensus 44 Ek~~~~~~V~eLE~sL~eLk~q~~~~~-~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~---E 119 (617)
T PF15070_consen 44 EKEHDISRVQELERSLSELKNQMAEPP-PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQ---E 119 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 356677888888887777765443311 222222111111123446777999999999999999999987733222 2
Q ss_pred HHHHHHHH
Q 017151 91 IKGQLADL 98 (376)
Q Consensus 91 iK~qLadL 98 (376)
-+..|++|
T Consensus 120 qEerL~EL 127 (617)
T PF15070_consen 120 QEERLAEL 127 (617)
T ss_pred HHHHHHHH
Confidence 35566655
No 22
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.29 E-value=2.6 Score=36.46 Aligned_cols=100 Identities=23% Similarity=0.290 Sum_probs=71.7
Q ss_pred CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Q 017151 43 PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122 (376)
Q Consensus 43 pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~ 122 (376)
...+....||.++ ...+|-|+-.||.+++...++...|.+|+.....--..+. +.......+++
T Consensus 12 ~~~~~~ve~L~s~-lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----~~~~~~~~L~~----------- 75 (120)
T PF12325_consen 12 GPSVQLVERLQSQ-LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR----ALKKEVEELEQ----------- 75 (120)
T ss_pred CchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-----------
Confidence 3344566676654 6778999999999999999999999999988766544442 22333334443
Q ss_pred HHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017151 123 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ 168 (376)
Q Consensus 123 AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~ 168 (376)
+.+....+-.++++-+-+-.++++||+.++.+.|.+
T Consensus 76 ----------el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 76 ----------ELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred ----------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 334455777888888888888999999999888854
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=93.16 E-value=13 Score=39.23 Aligned_cols=35 Identities=26% Similarity=0.603 Sum_probs=24.8
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhH
Q 017151 229 STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLK 266 (376)
Q Consensus 229 StskyisaLEee~e~lr~si~~LQskLR~glEIEnHLk 266 (376)
.....+..+++.++.++..++.|...+. .++..+.
T Consensus 657 ~~~~~~~~l~~~l~~~~~~~~~l~~~i~---~~~~~~e 691 (880)
T PRK02224 657 RAEEYLEQVEEKLDELREERDDLQAEIG---AVENELE 691 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3667788888888888888888887765 3444443
No 24
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.92 E-value=16 Score=39.43 Aligned_cols=174 Identities=25% Similarity=0.331 Sum_probs=116.5
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhh
Q 017151 50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDN 129 (376)
Q Consensus 50 TRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~ 129 (376)
+-|+.+=-..|++.-...-.++++|...|.+|.|-++++--..+..+-| ..+-..+..+|.=||..|-+
T Consensus 216 ~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~esl----re~~~~L~~D~nK~~~y~~~------- 284 (581)
T KOG0995|consen 216 SELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESL----REKKARLQDDVNKFQAYVSQ------- 284 (581)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH----HHHHHHHHhHHHHHHHHHHH-------
Confidence 4455566667888777788999999999999999999888887777665 23334588899999988765
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccc
Q 017151 130 SVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWE 209 (376)
Q Consensus 130 slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~ 209 (376)
|+ -+-..|-++++...+-+++-++.++..+..|+.|+..++.+ ++|..
T Consensus 285 --~~-----~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-------------------------~iS~~ 332 (581)
T KOG0995|consen 285 --MK-----SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-------------------------GISGE 332 (581)
T ss_pred --HH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------CCCHH
Confidence 33 45566888888888888888888888888888777655433 22211
Q ss_pred chhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHH
Q 017151 210 DKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISN 285 (376)
Q Consensus 210 ~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~n 285 (376)
+==- -.-=--.|..++.++...+|.|+.++ ++.+--.+....++|++=+-+++.+++
T Consensus 333 dve~----------------mn~Er~~l~r~l~~i~~~~d~l~k~v---w~~~l~~~~~f~~le~~~~~~~~l~~~ 389 (581)
T KOG0995|consen 333 DVER----------------MNLERNKLKRELNKIQSELDRLSKEV---WELKLEIEDFFKELEKKFIDLNSLIRR 389 (581)
T ss_pred HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 00001245666666666666666543 344444455666777777777776665
No 25
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.89 E-value=15 Score=39.13 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=57.2
Q ss_pred HHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHH
Q 017151 239 DELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDV 318 (376)
Q Consensus 239 ee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e~~s~iks~v~~ 318 (376)
+++..+|.++..+...+|-==|.=+-|++.+..|-|. ..-...-..|-++-+---+|+.+|-+||.+-+ .|..-||.
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr-~lQkeiN~ 523 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTRRILEIVKNIRKQKEEIEKILSDTR-ELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4566667777666666665544444444444333333 33344445666777777789999999999876 46677899
Q ss_pred HHhhhhccccc
Q 017151 319 IEEKTQHCDDV 329 (376)
Q Consensus 319 i~ekl~~~~n~ 329 (376)
+..|+.-.+.+
T Consensus 524 l~gkL~RtF~v 534 (594)
T PF05667_consen 524 LTGKLDRTFTV 534 (594)
T ss_pred HHHHHHhHHHH
Confidence 99999444455
No 26
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.77 E-value=25 Score=41.30 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=31.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 017151 51 RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (376)
Q Consensus 51 RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (376)
|.++.-+++..+.....+++|...-..-..+.+++. -|+.++.+|
T Consensus 282 R~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~---ELe~rL~kL 326 (1486)
T PRK04863 282 RVHLEEALELRRELYTSRRQLAAEQYRLVEMARELA---ELNEAESDL 326 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 677888888888888888877777666666666664 355666655
No 27
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.73 E-value=24 Score=41.11 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=8.4
Q ss_pred HHHHHHHhhhhccch
Q 017151 297 LRVHVVNSLEEGRSH 311 (376)
Q Consensus 297 ~R~~Im~lL~e~~s~ 311 (376)
+-.+|.+-|.++.+.
T Consensus 701 ~~~e~~~~lseek~a 715 (1317)
T KOG0612|consen 701 QMKEIESKLSEEKSA 715 (1317)
T ss_pred HHHHHHHHhcccccH
Confidence 334566666666554
No 28
>PRK11637 AmiB activator; Provisional
Probab=91.44 E-value=16 Score=36.15 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=20.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 017151 52 MHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (376)
Q Consensus 52 M~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (376)
+++.-++.++++++.+++++...-.+-..++.++.
T Consensus 37 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 37 AFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566777788888777655554444444444
No 29
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.43 E-value=22 Score=37.78 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=18.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 017151 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (376)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (376)
+...+..+++.+..++.....+-..+.+++.+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~ 263 (1164)
T TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISEL 263 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666665555555555543
No 30
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.24 E-value=29 Score=37.21 Aligned_cols=68 Identities=28% Similarity=0.410 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q 94 (376)
|+.=|+||+-|||+..--+ .--..+|-||.+.|-.++.+|++....-.+.=..|...|++ +|.|
T Consensus 2 l~e~l~qlq~Erd~ya~~l-------------k~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e---Lk~q 65 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQL-------------KEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE---LKNQ 65 (617)
T ss_pred hHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 4566899999999954322 22345799999999999999999887777777778878877 6777
Q ss_pred HHHH
Q 017151 95 LADL 98 (376)
Q Consensus 95 LadL 98 (376)
++..
T Consensus 66 ~~~~ 69 (617)
T PF15070_consen 66 MAEP 69 (617)
T ss_pred hccc
Confidence 7744
No 31
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=89.93 E-value=13 Score=36.61 Aligned_cols=138 Identities=20% Similarity=0.241 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151 10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (376)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (376)
.+.|++.+|+.-|.+|-.||..+++.+=-...+.. =..++ ...|.+.++.|+++|... .|.+=|.+
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~-~e~~~------~~~l~~~~~~L~~~L~~l-----~l~~~lg~-- 152 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESD-EEKIS------PEELAQQLEELSKQLDSL-----KLEELLGE-- 152 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCC------hhhHHHHHHHHHHHHHHh-----hcccccch--
Confidence 45799999999999999999999998643211110 00000 122345566666666655 11111111
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhh--hhhhHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 017151 90 RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAER--DNSVMEAEKAKEKEE-LMSQKFNEFQTRLEELSSENIE 164 (376)
Q Consensus 90 RiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAER--D~slmEaEKaKE~Ee-~m~qk~~e~e~R~~E~~s~~~~ 164 (376)
.++.++..+.-.-...+-.++.-|++..+++-..- |...-|.-...+... .-+++++.|+.|+..|++.+--
T Consensus 153 ---~~~~~~~~~~~~~~~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 153 ---ETAQDLSDPQKALSKKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGI 227 (388)
T ss_pred ---hhhcccccchhhHHHHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCC
Confidence 23333333444455666677777764333221111 111111111222222 2468999999999999988765
No 32
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.46 E-value=30 Score=36.18 Aligned_cols=48 Identities=25% Similarity=0.361 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHH
Q 017151 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQE 63 (376)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQe 63 (376)
+.+.+++.+++.++++.++.+.++ .+|+++++.++-.+.+=-.-++.+
T Consensus 265 ~~Le~ei~~le~e~~e~~~~l~~l---~~~~~p~~l~~~ll~~~~~q~~~e 312 (650)
T TIGR03185 265 EQLERQLKEIEAARKANRAQLREL---AADPLPLLLIPNLLDSTKAQLQKE 312 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hcccCCHhhhHHHHHHHHHHHHHH
Confidence 466677777777777777766555 477888888876665433334433
No 33
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=89.29 E-value=18 Score=33.37 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 017151 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (376)
Q Consensus 140 ~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~ 191 (376)
+-..+.+++.+.+.|.+.++..+.......+.|..+|...++......+-++
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666666666666666666666666666666666666665555554
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=88.87 E-value=34 Score=36.03 Aligned_cols=63 Identities=25% Similarity=0.325 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 017151 15 LMARIQQLEHERDELRKDIEQL---------CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARE 77 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqL---------CMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rE 77 (376)
+..++.+++.+.++|.+-++.| |-+.=||.|-.-.+-=+-+....|+.+|+.|++++..+..+
T Consensus 410 l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~ 481 (880)
T PRK03918 410 ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE 481 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555444322 34444454533333334455555666666666655555443
No 35
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=88.47 E-value=1.1 Score=38.78 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=45.0
Q ss_pred HHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhh
Q 017151 113 VKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (376)
Q Consensus 113 VkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~ 183 (376)
++|-|+=-+. -|||.+.||.|||. +..|+..|+.....++.+|.+|..-+.+|+--.
T Consensus 6 l~fLQ~Ew~r--~ErdR~~WeiERaE------------mkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aL 62 (134)
T PF08232_consen 6 LHFLQTEWHR--FERDRNQWEIERAE------------MKARIAFLEGERRGQENLKKDLKRRIKMLEYAL 62 (134)
T ss_pred HHHHHHHHHH--HHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566665544 38999999999986 667888899999999999999988887776433
No 36
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.46 E-value=27 Score=34.35 Aligned_cols=125 Identities=20% Similarity=0.228 Sum_probs=81.2
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhh-hhhhhHHH
Q 017151 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAE-RDNSVMEA 134 (376)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAE-RD~slmEa 134 (376)
|+.-++-=++.|...+.+.-.|...|-..+..+=.++-.|-+.|..=..+-..+.+.+..+++|=..-+.. | ..|
T Consensus 138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l--- 213 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKL--- 213 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHH---
Confidence 55555555667777788888888888877777777777777777655555555555555555553322211 1 111
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 135 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 135 EKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
.+....-+.+.+++.+++.++.++.+.+.+.+.....++.+++..+...+
T Consensus 214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233345567788888889998888888888888777777766655333
No 37
>PRK11637 AmiB activator; Provisional
Probab=87.99 E-value=29 Score=34.28 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=22.8
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH-HHHHHHHHHH
Q 017151 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR-IKGQLADLHA 100 (376)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR-iK~qLadLh~ 100 (376)
+....++++|..++.++.....+=..++++|...+. ++.++..+|.
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555543 2333334444
No 38
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.20 E-value=63 Score=37.20 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACAR 76 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~r 76 (376)
.+.+...|.+...+-.++++.++. ..+..|.|.+-.+. ..|||.+.....+|...-+
T Consensus 67 ~~~~~~~i~~ap~~~~~~~~~l~~--~~~~~~~~~~~~s~------~~Leq~l~~~~~~L~~~q~ 123 (1109)
T PRK10929 67 AKQYQQVIDNFPKLSAELRQQLNN--ERDEPRSVPPNMST------DALEQEILQVSSQLLEKSR 123 (1109)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHh--hhcccccccccCCH------HHHHHHHHHHHHHHHHHHH
Confidence 445556666666677778888886 45555666333222 4555555555444444333
No 39
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.52 E-value=14 Score=39.99 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhccchhhhhHHHHHh
Q 017151 294 HSQLRVHVVNSLEEGRSHIKSISDVIEE 321 (376)
Q Consensus 294 h~~~R~~Im~lL~e~~s~iks~v~~i~e 321 (376)
=..|+..|-++|.+...+|+..|+.|..
T Consensus 683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 683 SESQKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999988764
No 40
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.49 E-value=2.6 Score=44.31 Aligned_cols=124 Identities=21% Similarity=0.200 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcch
Q 017151 151 FQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST 230 (376)
Q Consensus 151 ~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tSt 230 (376)
..+++..|+..+.....-+..|+.++..++.+.+.. .+| ..--...-|+=.|=+.|.-.|-+.-
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~--------~L~-----g~~~~~~trVL~lr~NP~~~~~~~k--- 564 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKL--------TLQ-----GEFNPSKTRVLHLRDNPTSKAEQIK--- 564 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCC-----T--BTTTEEEEEESS-HHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhc-----cccCCCCceeeeeCCCcHHHHHHHH---
Confidence 344555555555555555566666665555554410 011 0001222344444455543333321
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhhh--------hHHHH----HHhHHhHHHHHHhhhhhHHHHHHHHHHH
Q 017151 231 SKYISALEDELEKTRSSVENLQSKLRM--------GLEIE----NHLKKSVRELEKKIIHSDKFISNAIAEL 290 (376)
Q Consensus 231 skyisaLEee~e~lr~si~~LQskLR~--------glEIE----nHLkk~~r~LEk~q~~~d~~i~ngis~L 290 (376)
..=+.+|-.|++.|++.+..|...-.. ++..- +-|+..+..+||+..-+-.++..-+.++
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eF 636 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEF 636 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123456666666666666555422111 12211 2467777777777666666665555544
No 41
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=85.13 E-value=31 Score=34.73 Aligned_cols=193 Identities=22% Similarity=0.255 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (376)
.+..--.+++.-||||++---+ +---.|+.|+- .+|+.=|.-+|++||. .--++|.
T Consensus 67 ~~~seq~~~~~a~~elq~~ks~----~Q~e~~v~a~e---~~~~rll~d~i~nLk~-----------------se~~lkq 122 (330)
T KOG2991|consen 67 VRLSEQDFKVMARDELQLRKSW----KQYEAYVQALE---GKYTRLLSDDITNLKE-----------------SEEKLKQ 122 (330)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc---CcccchhHHHHHhhHH-----------------HHHHHHH
Confidence 3444455667778888753111 11134555543 3888889999999986 2235666
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 017151 94 QLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 173 (376)
Q Consensus 94 qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq 173 (376)
|+++- +.+|....-.++.-++-+-||.|++.+.|.+-.---
T Consensus 123 Q~~~a---------------------------------------~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~ 163 (330)
T KOG2991|consen 123 QQQEA---------------------------------------ARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSV 163 (330)
T ss_pred HHHHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 65544 344555556677777777788888887775432111
Q ss_pred hhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccC-cchhHhHHH----HHHHHHHHHhhH
Q 017151 174 FDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFND-TSTSKYISA----LEDELEKTRSSV 248 (376)
Q Consensus 174 ~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~-tStskyisa----LEee~e~lr~si 248 (376)
+. ..+-.+--.||-||.--...++.-+--.++ +-+-..-|.|.- .-|-|-+=| |-+|++.|-...
T Consensus 164 ~q-----lR~~llDPAinl~F~rlK~ele~tk~Klee-----~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~ 233 (330)
T KOG2991|consen 164 AQ-----LRSTLLDPAINLFFLRLKGELEQTKDKLEE-----AQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQA 233 (330)
T ss_pred HH-----HHHHhhChHHHHHHHHHHHHHHHHHHHHHH-----HHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhh
Confidence 11 112223366777776555554442211111 122233488873 345555433 666666554333
Q ss_pred HHHhhhhhh-hHHHHHHhHHhHH-HHHHhhhhhHHHH
Q 017151 249 ENLQSKLRM-GLEIENHLKKSVR-ELEKKIIHSDKFI 283 (376)
Q Consensus 249 ~~LQskLR~-glEIEnHLkk~~r-~LEk~q~~~d~~i 283 (376)
|+=|+ -||||=-++|.-+ +|-+.|--.++||
T Consensus 234 ----s~Gria~Le~eLAmQKs~seElkssq~eL~dfm 266 (330)
T KOG2991|consen 234 ----SEGRIAELEIELAMQKSQSEELKSSQEELYDFM 266 (330)
T ss_pred ----hcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHH
Confidence 33343 3777777776654 3444444444443
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.04 E-value=51 Score=34.19 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHhhhh--hcchHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH
Q 017151 59 GLEQEIEILKQKIAACARE--NSNLQEELSEAYRIKGQLADL---HAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME 133 (376)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rE--n~nLQEELsEAYRiK~qLadL---h~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmE 133 (376)
+++.+|+.+++++..+... +..|-.--..-=.|..++..| ...|..-.+.+++...-..+.+..+=..=+.-.-|
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554321 122222222223344444444 44777777888888887777777766666666666
Q ss_pred HHHhHHH
Q 017151 134 AEKAKEK 140 (376)
Q Consensus 134 aEKaKE~ 140 (376)
.+..++.
T Consensus 333 i~~l~~s 339 (569)
T PRK04778 333 IDRVKQS 339 (569)
T ss_pred HHHHHHc
Confidence 6666655
No 43
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.16 E-value=31 Score=30.22 Aligned_cols=37 Identities=35% Similarity=0.303 Sum_probs=23.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (376)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (376)
+-+|...+|++|..|++|+...-.+=..+++.|.++-
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777766666666666666666554
No 44
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.31 E-value=7.3 Score=36.75 Aligned_cols=70 Identities=31% Similarity=0.403 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHH---HHHHHHHHHHHhhhhhcc
Q 017151 12 SEALMARIQQLEH-------ERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQ---EIEILKQKIAACARENSN 80 (376)
Q Consensus 12 ~esl~aRI~qLEh-------ERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQ---eIE~Lkkkl~~c~rEn~n 80 (376)
+-+|.+.|.-|+. |+|.|.+++++||+.-++ ++-|-+.++...+|-+-+.. .|+.|++-+..++.=+.-
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~tee 176 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEE 176 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4456666665554 899999999999999888 88888889999999887753 455666555444443333
Q ss_pred h
Q 017151 81 L 81 (376)
Q Consensus 81 L 81 (376)
|
T Consensus 177 L 177 (193)
T PF14662_consen 177 L 177 (193)
T ss_pred H
Confidence 3
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.79 E-value=25 Score=32.77 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=19.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhh
Q 017151 51 RMHFQRTAGLEQEIEILKQKIAACAR 76 (376)
Q Consensus 51 RM~~QRtA~LEQeIE~Lkkkl~~c~r 76 (376)
.-...|...||+++..|+.+|.....
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34557888888888888888776443
No 46
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.68 E-value=60 Score=37.41 Aligned_cols=140 Identities=21% Similarity=0.189 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhh-hcchHHHHHHH-H
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARE-NSNLQEELSEA-Y 89 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rE-n~nLQEELsEA-Y 89 (376)
...-++.|++|+.+-|.|.||+|.+|-=+.--++|.+ |.+|.--+-=+ -.+-+.++-.| =
T Consensus 197 ~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~------------------l~~k~~~v~y~~~~~ey~~~k~~~~ 258 (1072)
T KOG0979|consen 197 LTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIEL------------------LEKKKKWVEYKKHDREYNAYKQAKD 258 (1072)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhccccchHhhhHHHHHHHHHHH
Confidence 4455678889999999999999999976665566432 21111111100 01122222223 3
Q ss_pred HHHHHHHHHHH---HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 90 RIKGQLADLHA---AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK 166 (376)
Q Consensus 90 RiK~qLadLh~---ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk 166 (376)
|.|.++-+|-. .=..+-+++|+ -++-.++.=+..-+++-++..+--...-+|.+++.++.++....+..+
T Consensus 259 r~k~~~r~l~k~~~pi~~~~eeLe~-------~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk 331 (1072)
T KOG0979|consen 259 RAKKELRKLEKEIKPIEDKKEELES-------EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLK 331 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHh-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777766633 22345566776 345677777777788888888888888888889999998888888777
Q ss_pred hhhHHHhhhH
Q 017151 167 KQNATLRFDL 176 (376)
Q Consensus 167 ~~n~~Lq~dl 176 (376)
..-...|.++
T Consensus 332 ~~~~~rq~~i 341 (1072)
T KOG0979|consen 332 KAAEKRQKRI 341 (1072)
T ss_pred HHHHHHHHHH
Confidence 6666555555
No 47
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=81.39 E-value=6.7 Score=31.62 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=46.5
Q ss_pred CcchhHhHHHHHHHHHHHHhhHHHHhhhh---------hhhHHHHHHhHHhHHHHHHhhhhhHH
Q 017151 227 DTSTSKYISALEDELEKTRSSVENLQSKL---------RMGLEIENHLKKSVRELEKKIIHSDK 281 (376)
Q Consensus 227 ~tStskyisaLEee~e~lr~si~~LQskL---------R~glEIEnHLkk~~r~LEk~q~~~d~ 281 (376)
+.+.+.-|.+|++|++.++-....|+..+ |..-.+++||++-|..||.|--.+.+
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999888885543 67889999999999999998655443
No 48
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=81.36 E-value=18 Score=34.50 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 143 ~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
-+.+|=.-|-.|..||+.++..++.....||.++..++.-|-
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999999999998
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.14 E-value=37 Score=36.06 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhHHHHHh-hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHH
Q 017151 108 EAEKQVKFFQGCMAAAFA-ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (376)
Q Consensus 108 e~EkqVkFfQs~vA~AFA-ERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~ 179 (376)
++|.|-.+|-...--+=+ +-|.+.+|++| ..|.+++.+++.++...++....++++|-.|+.++-..
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~k-----k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw 415 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEK-----KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVW 415 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444444455444444444 55677777654 45778999999999999999999999998888777433
No 50
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=80.76 E-value=10 Score=29.52 Aligned_cols=74 Identities=27% Similarity=0.381 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 017151 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqL--------CMQQaGpgyl----~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~ 79 (376)
...+.++|.+|+++.+++.-=++.| |+..-|+-|| .-+.-++-.+...++.+|++|++++..+...=.
T Consensus 14 l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 14 LQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666655444433 8888888886 346677888888888888888888777666555
Q ss_pred chHHHH
Q 017151 80 NLQEEL 85 (376)
Q Consensus 80 nLQEEL 85 (376)
.++..|
T Consensus 94 ~~~~~l 99 (106)
T PF01920_consen 94 ELKKKL 99 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 51
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.25 E-value=8.5 Score=31.06 Aligned_cols=73 Identities=27% Similarity=0.369 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hcCCch--H-------------HHhhHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQ---QAGPSY--L-------------AVATRMHFQRTAGLEQEIEILKQKIAACAR 76 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQ---QaGpgy--l-------------~vATRM~~QRtA~LEQeIE~Lkkkl~~c~r 76 (376)
.....+.+.+|-+.|++.++.|... --|++. + ....|+-++.+.-|..+|++|++|...+..
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~ 89 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE 89 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777663 345432 1 235678888888999999999999999999
Q ss_pred hhcchHHHHHH
Q 017151 77 ENSNLQEELSE 87 (376)
Q Consensus 77 En~nLQEELsE 87 (376)
+|..|+..+.|
T Consensus 90 en~~L~~~~~e 100 (100)
T PF01486_consen 90 ENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHhcC
Confidence 99999988754
No 52
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=80.14 E-value=17 Score=27.73 Aligned_cols=58 Identities=28% Similarity=0.442 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhH----HHHHhhhhhHHHHHHHHHHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATR----MHFQRTAGLEQEIEILKQKIA 72 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATR----M~~QRtA~LEQeIE~Lkkkl~ 72 (376)
+.+-|.-|+.+.+.+.++|+.+=--=+.|||++=|.. -...+-+.++.+++.|...|.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999888889999886653 234455666666777766554
No 53
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=79.48 E-value=25 Score=26.74 Aligned_cols=80 Identities=28% Similarity=0.352 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (376)
....++..|+..++++...+...+ + | .-....+++..=...|+..|..++..+..+-.+=...++.|.+|++=..
T Consensus 16 ~~~~~l~~L~~~~~~~~~~~~~~~-~--~--~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 16 EAEEQLEQLQQERQEYQEQLSESQ-Q--G--VSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHT------S--G--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-C--C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444 2 3 2123445566667789999999999999999999999999999998887
Q ss_pred HHHHH
Q 017151 94 QLADL 98 (376)
Q Consensus 94 qLadL 98 (376)
.+..|
T Consensus 91 ~~e~L 95 (123)
T PF02050_consen 91 KLEKL 95 (123)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77777
No 54
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=79.32 E-value=73 Score=31.98 Aligned_cols=80 Identities=30% Similarity=0.431 Sum_probs=53.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHH------HHhhhhhHHHHHHHHHHHHHhhhhhcchHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH------FQRTAGLEQEIEILKQKIAACARENSNLQEE 84 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~------~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEE 84 (376)
..+.|-.+++.||.|-..||...-+|=.--+ .| -=--+|+ --++|+ +.|-.|..-|+.++.+|...|+|
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~--~~-EekEqqLv~dcv~QL~~An--~qia~LseELa~k~Ee~~rQQEE 235 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETD--TY-EEKEQQLVLDCVKQLSEAN--QQIASLSEELARKTEENRRQQEE 235 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh--hc-cHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999988888887766632111 00 0001111 112333 34788888899999999999998
Q ss_pred HHHHHHHHHHHHHH
Q 017151 85 LSEAYRIKGQLADL 98 (376)
Q Consensus 85 LsEAYRiK~qLadL 98 (376)
.+ ++-+|++||
T Consensus 236 It---~Llsqivdl 246 (306)
T PF04849_consen 236 IT---SLLSQIVDL 246 (306)
T ss_pred HH---HHHHHHHHH
Confidence 87 578888888
No 55
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=79.03 E-value=50 Score=31.65 Aligned_cols=48 Identities=29% Similarity=0.450 Sum_probs=34.0
Q ss_pred hHHHHHhhhhhhhH-HHH--Hh----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 017151 119 CMAAAFAERDNSVM-EAE--KA----KEKEELMS--QKFNEFQTRLEELSSENIELK 166 (376)
Q Consensus 119 ~vA~AFAERD~slm-EaE--Ka----KE~Ee~m~--qk~~e~e~R~~E~~s~~~~qk 166 (376)
-.|+|-++||++++ +.. +. |+.++... .++.+.|.|++.|.+.+.+-.
T Consensus 100 Aaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~EKD 156 (205)
T PF12240_consen 100 AAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIAEKD 156 (205)
T ss_pred HHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34888899999554 333 33 44566555 468899999999998887654
No 56
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.02 E-value=1.4e+02 Score=34.58 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH-----------HHHHHHHH-----HHHHHHh
Q 017151 42 GPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR-----------IKGQLADL-----HAAEVIK 105 (376)
Q Consensus 42 Gpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR-----------iK~qLadL-----h~ae~~K 105 (376)
--.|..+..+...+..-.-..+++.++.++..+..+-...++++.++=. ++..+..| |+.. ..
T Consensus 256 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~-~e 334 (1353)
T TIGR02680 256 YRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDA-EE 334 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH-HH
Confidence 3456665555555554444555666666666666666666665555544 23333333 2211 11
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSE 161 (376)
Q Consensus 106 N~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~ 161 (376)
-.+++.|++-.+...+.+... ++++..+.+..-+...+.+.|+.+..+.
T Consensus 335 L~el~~ql~~~~~~a~~~~~~-------~~~a~~~~e~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 335 LERARADAEALQAAAADARQA-------IREAESRLEEERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 125566777666666555543 2334445555555556666666555444
No 57
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=77.67 E-value=37 Score=27.66 Aligned_cols=56 Identities=13% Similarity=0.328 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhh
Q 017151 63 EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNS 130 (376)
Q Consensus 63 eIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~s 130 (376)
.++.|++++..+...-.-|.-++.|+..+..-|..| +..-+.| -.|..+|-++|..
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l-----------~~d~~vy-~~VG~vfv~~~~~ 62 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL-----------ADDAEVY-KLVGNVLVKQEKE 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchHH-HHhhhHHhhccHH
Confidence 467788888888888888888888888887777655 2344445 4677888887764
No 58
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=77.38 E-value=94 Score=32.18 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHH--HhhHHHHHhhhhhHHHH
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLA--VATRMHFQRTAGLEQEI 64 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~--vATRM~~QRtA~LEQeI 64 (376)
.|.+..+|..|.++.++++..|-..---..+ .|.. ..++-+..|+..|..||
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~-df~~~~~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYS-DFSPSLQSAKDLIERSKSLAREI 62 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 6788999999999999999998766554433 2322 22333455666666666
No 59
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=77.23 E-value=62 Score=30.05 Aligned_cols=77 Identities=22% Similarity=0.125 Sum_probs=54.5
Q ss_pred HHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHH
Q 017151 111 KQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK 187 (376)
Q Consensus 111 kqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~ 187 (376)
++|.-...--|+.-.++|+.-.+++..+.+=+.-.+.....+.-+..+.+.+++..-...+|+..+..+++......
T Consensus 61 ~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 61 RQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 33333344457777788888888888877766666777777777777777777777777778888877777776433
No 60
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.68 E-value=92 Score=33.27 Aligned_cols=66 Identities=21% Similarity=0.108 Sum_probs=41.7
Q ss_pred hhHHHHHhhhhhHH-HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 017151 49 ATRMHFQRTAGLEQ-EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVK 114 (376)
Q Consensus 49 ATRM~~QRtA~LEQ-eIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVk 114 (376)
.--++-++.-.++| ++++.+..+...+.+-.+|+.+++.+-..|.-+-+.-..--.|-+++.++.+
T Consensus 333 qr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 333 QRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888888 8999888888888887787777777665554444332222233334444443
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.11 E-value=1.7e+02 Score=34.04 Aligned_cols=148 Identities=19% Similarity=0.265 Sum_probs=105.5
Q ss_pred HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHH
Q 017151 101 AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQE 180 (376)
Q Consensus 101 ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~ 180 (376)
....++.++.+...=++-.++..-.|=|.-=-|.+-+++.-......+++++.-..+.++.+...|.--+.|...++.++
T Consensus 306 ~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~ 385 (1074)
T KOG0250|consen 306 EKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLE 385 (1074)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777666556667777777777778888888888888888888888888888888888
Q ss_pred HhhH-hHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 017151 181 ELNE-SFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGL 259 (376)
Q Consensus 181 eq~e-~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~gl 259 (376)
+++- ..-+-+. .-++|-. ...+=|..||+++.+|+.+...++++++.+=
T Consensus 386 ~~~~~~~~~~~~---------------e~e~k~~---------------~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 386 KQTNNELGSELE---------------ERENKLE---------------QLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHhhhhhhHH---------------HHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8772 1111111 0011111 1556688899999999999999999999887
Q ss_pred HHHHHhHHhHHHHHHhhhh
Q 017151 260 EIENHLKKSVRELEKKIIH 278 (376)
Q Consensus 260 EIEnHLkk~~r~LEk~q~~ 278 (376)
|==-|++..++.|.+++-.
T Consensus 436 ee~~~i~~~i~~l~k~i~~ 454 (1074)
T KOG0250|consen 436 EEKEHIEGEILQLRKKIEN 454 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7666787777777776543
No 62
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=74.10 E-value=36 Score=26.50 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=25.2
Q ss_pred cchhHhHHHHHHHHHHHHhhHHHHhhhhh
Q 017151 228 TSTSKYISALEDELEKTRSSVENLQSKLR 256 (376)
Q Consensus 228 tStskyisaLEee~e~lr~si~~LQskLR 256 (376)
.+...++..|++..+.+...|++|..++.
T Consensus 58 ~~~~~~~~~L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 58 QDKEEAIEELEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999888764
No 63
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=73.60 E-value=1.4e+02 Score=32.53 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 017151 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLAD 97 (376)
Q Consensus 60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLad 97 (376)
.+..+..+...+..+-....+|.+.-.+....+.++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~ 309 (908)
T COG0419 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEG 309 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555544
No 64
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.48 E-value=82 Score=29.64 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=21.4
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 017151 50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (376)
Q Consensus 50 TRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (376)
...+..+.+.+....+.++.++.....+-..++.++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~ 161 (423)
T TIGR01843 125 PELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELA 161 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666655555455554444
No 65
>PF13514 AAA_27: AAA domain
Probab=72.58 E-value=1.7e+02 Score=32.83 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQ 39 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQ 39 (376)
...+..||.+++.+.+.+...+..|+-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888888888853
No 66
>PRK11281 hypothetical protein; Provisional
Probab=72.47 E-value=1.9e+02 Score=33.45 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhhcCCchHHHhhHHHH--HhhhhhHHH---------------HHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLC----MQQAGPSYLAVATRMHF--QRTAGLEQE---------------IEILKQKIA 72 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLC----MQQaGpgyl~vATRM~~--QRtA~LEQe---------------IE~Lkkkl~ 72 (376)
.|.+++.+++.+..+.++|..++= -+|.-|-- +-|+|-. +|+..+.+. ...|+..+.
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PER--AQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~ 202 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPER--AQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQA 202 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHH--HHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHH
Confidence 388888888888888888887663 34555655 3333322 222222211 223444555
Q ss_pred HhhhhhcchHHHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH---HHhhhhhhhHHHHHh------
Q 017151 73 ACARENSNLQEELSE------AYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA---AFAERDNSVMEAEKA------ 137 (376)
Q Consensus 73 ~c~rEn~nLQEELsE------AYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~---AFAERD~slmEaEKa------ 137 (376)
+...+|.-++.||.. -|+.+..+.. .+-..+|.++.+.|..+.. .-+|- .+-||+..
T Consensus 203 ~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~------~~~~~~~~~~~~lq~~in~kr~~~se~--~~~~a~~~~~~~~~ 274 (1113)
T PRK11281 203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLT------ARIQRLEHQLQLLQEAINSKRLTLSEK--TVQEAQSQDEAARI 274 (1113)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhccc
Confidence 555555555555542 2333332222 2334567777777776654 22221 22222111
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 017151 138 ---------KEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (376)
Q Consensus 138 ---------KE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~ 185 (376)
-+.-..+++.+.+.-+|+..+..+...-|..=+.+...+..++||.+.
T Consensus 275 ~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~ 331 (1113)
T PRK11281 275 QANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISV 331 (1113)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122345666666666777776666666666666666666666666653
No 67
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.22 E-value=59 Score=31.74 Aligned_cols=60 Identities=30% Similarity=0.359 Sum_probs=32.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHh
Q 017151 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIR 197 (376)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR 197 (376)
|.++.++.|+.....++.++..+.+.+......+..-+..+..+..++.- +|.|..|.|.
T Consensus 86 e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt-----Nv~n~~F~I~ 145 (314)
T PF04111_consen 86 ELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT-----NVYNDTFHIW 145 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-------TTTTT--EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CchhceeeEe
Confidence 44445566667777888888777776666555554444444444333322 4555555554
No 68
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=71.67 E-value=67 Score=29.64 Aligned_cols=88 Identities=30% Similarity=0.348 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 017151 17 ARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLA 96 (376)
Q Consensus 17 aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLa 96 (376)
.---+|+|.+.-+.. .| .|++-|+.--.+.-.-+-.-...|++++..+++++..+++.+.+-|.+... .++ .|.
T Consensus 108 na~a~lehq~~R~~N-Le--Ll~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~--~L~-~Le 181 (221)
T PF05700_consen 108 NAYAQLEHQRLRLEN-LE--LLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE--ELR-YLE 181 (221)
T ss_pred HHHHHHHHHHHHHHH-HH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHH-HHH
Confidence 333467776654332 22 478888543334444455556788899999999999999999988887443 333 677
Q ss_pred HHHHHHHHhhHHHH
Q 017151 97 DLHAAEVIKNMEAE 110 (376)
Q Consensus 97 dLh~ae~~KN~e~E 110 (376)
.-|..-+.||-++|
T Consensus 182 ~~W~~~v~kn~eie 195 (221)
T PF05700_consen 182 QRWKELVSKNLEIE 195 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888888777
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.25 E-value=1.7e+02 Score=35.10 Aligned_cols=59 Identities=25% Similarity=0.237 Sum_probs=52.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 017151 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (376)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~ 191 (376)
-||+.+++.+.++.+-+.-..||.+|+-..++-.+.-+.++.+|+.|+...++.+.-|+
T Consensus 1690 rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1690 RAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 37788888888889999999999999988888888888999999999999999988887
No 70
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.77 E-value=81 Score=28.41 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 017151 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (376)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (376)
..+...|.++..+++.|+..|+.+=....++.. ...+.+......++..+..|+..+....++...+++.+.
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEILESDSNGQL--LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999987653333322 122222233333444444444444444444444444433
No 71
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.34 E-value=1.7e+02 Score=32.49 Aligned_cols=38 Identities=29% Similarity=0.345 Sum_probs=26.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
+.+|...|+.|+-.++..+.....||..|.....+...
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~ 69 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRK 69 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777665555433
No 72
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=69.87 E-value=79 Score=29.02 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcC--------CchHHHhhHHH--HHhhhhhHHHHHHHHHHHHHhhhh
Q 017151 11 ESEALMARIQQLEHERDELRKDIE---QLCMQQAG--------PSYLAVATRMH--FQRTAGLEQEIEILKQKIAACARE 77 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIE---qLCMQQaG--------pgyl~vATRM~--~QRtA~LEQeIE~Lkkkl~~c~rE 77 (376)
....|-++|.|..+-+.+|..=+. .++..... |..-.+.+|.- -||.++|+|-...|+.+|......
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~ 96 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKA 96 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888877765441 12221110 11112223322 379999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHH
Q 017151 78 NSNLQEELSEAYRIKGQLADL 98 (376)
Q Consensus 78 n~nLQEELsEAYRiK~qLadL 98 (376)
|..|.+||. ++..++..+
T Consensus 97 N~~L~~dl~---klt~~~~~l 114 (182)
T PF15035_consen 97 NEALQEDLQ---KLTQDWERL 114 (182)
T ss_pred HHHHHHHHH---HHHHHHHHH
Confidence 999999986 445555443
No 73
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.83 E-value=10 Score=28.26 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=31.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHH
Q 017151 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQL 95 (376)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qL 95 (376)
-..+...+.++|..|++++.....+|..|++++...-.-...+
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3445667888899999999999999999998887652333333
No 74
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.64 E-value=73 Score=29.09 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHH
Q 017151 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINK 192 (376)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~K 192 (376)
..+++++.++..+..++++.+......+ ...+..+++.+...+.-+|.
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el~~~~~~D---p~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKELEKYSEND---PEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888777544322 23445555556555555554
No 75
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.95 E-value=2e+02 Score=32.16 Aligned_cols=56 Identities=27% Similarity=0.396 Sum_probs=38.3
Q ss_pred HHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHH
Q 017151 120 MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEK 178 (376)
Q Consensus 120 vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~ 178 (376)
+..++.+|++.|+|..+.|-.-+ +.|..+..|++-+++.+-..|+-=..|+.+|.-
T Consensus 111 l~~~l~~~~~~i~~l~~~~~~~e---~~~~~l~~~l~~~eken~~Lkye~~~~~kelei 166 (769)
T PF05911_consen 111 LSKALQEKEKLIAELSEEKSQAE---AEIEDLMARLESTEKENSSLKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888777775544 577778888888777777766655555555543
No 76
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.80 E-value=1.8e+02 Score=32.47 Aligned_cols=60 Identities=27% Similarity=0.341 Sum_probs=40.5
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 125 AERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
++.++--++-.++...=+....+|.+.+..++++++.+...+..|..+-.++...++.++
T Consensus 603 ~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e 662 (769)
T PF05911_consen 603 SEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYE 662 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433344444444555666778888888888888888888888887777766655554
No 77
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=68.72 E-value=47 Score=38.46 Aligned_cols=121 Identities=21% Similarity=0.345 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHH
Q 017151 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHA---AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEK 136 (376)
Q Consensus 60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~---ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEK 136 (376)
|++||+.|++.+.-..-|+.+++.|---|-+-..-|+.++. +.=.+-++.=-+.-||-+-|--+ ++||.++=
T Consensus 203 lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveel--kedN~vLl--- 277 (1195)
T KOG4643|consen 203 LRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEEL--KEDNRVLL--- 277 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHH--HhhhHHHH---
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHH
Q 017151 137 AKEKEELMSQKFNEFQTRL--EELSSENIELKKQNATLRFDLEKQEELNESFK 187 (376)
Q Consensus 137 aKE~Ee~m~qk~~e~e~R~--~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~ 187 (376)
|--++|-.++..+..|- -+++|.+...+..-++++++.....-||+.++
T Consensus 278 --eekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~ 328 (1195)
T KOG4643|consen 278 --EEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELH 328 (1195)
T ss_pred --HHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
No 78
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=68.57 E-value=15 Score=30.48 Aligned_cols=64 Identities=28% Similarity=0.363 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 017151 10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (376)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (376)
...|.|+..++....||||||+=.- -..||. ..-| +--+.|.||-+=...-.+.++|+.+.++|
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~-----~~~~~~--~n~R--------~n~~ye~Lk~q~~~vM~dl~~l~~~~~ea 82 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILA-----LYTEGS--LNNR--------PNPEYEMLKSQHEEVMSDLHKLEMEITEA 82 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCC--cccC--------CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999996322 123444 3333 66678889888888899999999999887
No 79
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.42 E-value=2.7e+02 Score=33.11 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHH---HHHHHHHHHH----HHHHHhhHHHHHHHHHhhhhHH
Q 017151 64 IEILKQKIAACARENSNLQEELSEAY---RIKGQLADLH----AAEVIKNMEAEKQVKFFQGCMA 121 (376)
Q Consensus 64 IE~Lkkkl~~c~rEn~nLQEELsEAY---RiK~qLadLh----~ae~~KN~e~EkqVkFfQs~vA 121 (376)
...++++++..-+|-.++||+-+.-- +++.++..++ ++--+|-..+=+|+.++-.-+|
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~ 924 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIA 924 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677775544311 2233333332 2444555556666666644433
No 80
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=67.17 E-value=1.5e+02 Score=29.97 Aligned_cols=114 Identities=24% Similarity=0.357 Sum_probs=72.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhH
Q 017151 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY-RIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVM 132 (376)
Q Consensus 54 ~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY-RiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slm 132 (376)
-.+-.++|.-+-.|+.=+..++|=+..|.||.-.++ +||..+++|+ + .+.+|--+||
T Consensus 149 KKlg~nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~------------------~----cL~dREvaLl 206 (302)
T PF07139_consen 149 KKLGPNIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQ------------------S----CLMDREVALL 206 (302)
T ss_pred cccCccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH------------------H----HHHHHHHHHH
Confidence 356789999999999999999999999999997655 8999999993 3 3456777776
Q ss_pred -HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh
Q 017151 133 -EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNA-TLRFDLEKQEELNESFKEVINKFYEIRQQSLEV 203 (376)
Q Consensus 133 -EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~-~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~ 203 (376)
|-.|+| +|+|. -|..=+++.+| +|++-| |-||- ++|.--+..=|.-|--=|.++-+-
T Consensus 207 ~EmdkVK--~EAme-iL~aRqkkAee-------Lkrltd~A~~Ms----E~Ql~ELRadIK~fvs~rk~de~l 265 (302)
T PF07139_consen 207 AEMDKVK--AEAME-ILDARQKKAEE-------LKRLTDRASQMS----EEQLAELRADIKHFVSERKYDEEL 265 (302)
T ss_pred HHHHHHH--HHHHH-HHHHHHHHHHH-------HHHHHHHHhhcC----HHHHHHHHHHHHHHhhhhhhHHHH
Confidence 444444 55552 22222333333 333321 22221 233333445566777777766543
No 81
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=67.05 E-value=78 Score=26.81 Aligned_cols=39 Identities=36% Similarity=0.436 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 017151 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (376)
...+.++++.+..........|..++.+|.+ .|+++..+
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~---~r~~l~~~ 67 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEE---LRSQLQEL 67 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHH---HHHHHHHH
Confidence 3456777888888888888889888888876 56677666
No 82
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.91 E-value=2.8e+02 Score=33.12 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
+.+...+.+|..++.+++..+.+.+..-..++..+..+.....
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667778888888877777777666666666655555444
No 83
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.78 E-value=62 Score=26.37 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHH-----HHhhcCCchHH----HhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 017151 12 SEALMARIQQLEHERDEL---RKDIEQL-----CMQQAGPSYLA----VATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (376)
Q Consensus 12 ~esl~aRI~qLEhERDEL---rKDIEqL-----CMQQaGpgyl~----vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~ 79 (376)
...+...+.+|+.+..|. .+.|+.| |....||-||. -|.-.+..|...++.+|..+.+++.....+=.
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777766544 4555554 78888988764 36667788888888888888888877766666
Q ss_pred chHHHHHH
Q 017151 80 NLQEELSE 87 (376)
Q Consensus 80 nLQEELsE 87 (376)
+|+.+|.+
T Consensus 95 elk~~l~~ 102 (105)
T cd00632 95 ELQEKIQQ 102 (105)
T ss_pred HHHHHHHH
Confidence 66666544
No 84
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.57 E-value=99 Score=27.84 Aligned_cols=40 Identities=30% Similarity=0.339 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 017151 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~ 185 (376)
.+....+.|+..+...+..++......+..+.++++.++.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666667777777777777776777777666666663
No 85
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=66.45 E-value=1.9 Score=45.37 Aligned_cols=121 Identities=23% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH---------HHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH--
Q 017151 65 EILKQKIAACARENSNLQEELSEAYRIKGQLADL---------HAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME-- 133 (376)
Q Consensus 65 E~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL---------h~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmE-- 133 (376)
+.+.+.+..+..+|..|+-+-.+|-.+|..|+-| ..+++.+-++=-..+.||..-| ..+-|+-..+|+
T Consensus 270 e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qv-k~Lee~N~~l~e~~ 348 (713)
T PF05622_consen 270 EELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQV-KELEEDNAVLLETK 348 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444555556666666666666666666666644 1223333333333455555554 333333333332
Q ss_pred --HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhH
Q 017151 134 --AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186 (376)
Q Consensus 134 --aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~ 186 (376)
.|..-.+-.+...++..+...+-+++..+.+...-.+.|.+++..+++.++.+
T Consensus 349 ~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 349 AMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12111222233344445555555555555555555566666666666665543
No 86
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=65.42 E-value=1.5e+02 Score=29.56 Aligned_cols=193 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ 94 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q 94 (376)
++.|.+.|..|.+-.+|.-..+.-=- |.+|-...+=++||. +..|+.-|+.+-..|..|.+.|-..=-.=.+
T Consensus 57 l~~~~k~L~aE~~qwqk~~peii~~n--~~VL~~lgkeelqkl------~~eLe~vLs~~q~KnekLke~LerEq~wL~E 128 (268)
T PF11802_consen 57 LMMRVKCLTAELEQWQKRTPEIIPLN--PEVLLTLGKEELQKL------ISELEMVLSTVQSKNEKLKEDLEREQQWLDE 128 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC--HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHH-HHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 017151 95 LADLHAAEVIKNMEAEKQV-KFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 173 (376)
Q Consensus 95 LadLh~ae~~KN~e~EkqV-kFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq 173 (376)
--.++.+--..-.++..++ .|.=+.|.+++..+ +--+++-+++=-..+-.|.+=.=.+-.-+....+-+.-.+.--
T Consensus 129 qqql~~sL~~r~~elk~~~~~~se~rv~~el~~K---~~~~k~~~e~Ll~~LgeFLeeHfPlp~~~~~~~Kkk~~~~e~~ 205 (268)
T PF11802_consen 129 QQQLLESLNKRHEELKNQVETFSESRVFQELKTK---IEKIKEYKEKLLSFLGEFLEEHFPLPDEQGNAKKKKKGEDEPS 205 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCcccchhhhhhccccccc
Q ss_pred hhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccc-------cchhhhhcccccc
Q 017151 174 FDLEKQEELNESFKEVINKFYEIRQQSLEVLETSW-------EDKCACLLLDSAE 221 (376)
Q Consensus 174 ~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~-------~~Kc~~Ll~ds~~ 221 (376)
.++..+.+-.| ..||+.++.-.-.-.-.+-+| .-.|+|-+.+|.|
T Consensus 206 ~~~~~l~eilE---~LmN~l~~~p~DpYv~i~~~~WPpyie~LlR~GIa~rHP~D 257 (268)
T PF11802_consen 206 AQLITLREILE---ILMNKLLDSPHDPYVKIDDSFWPPYIELLLRSGIALRHPED 257 (268)
T ss_pred hhhhHHHHHHH---HHHHHhcCCCCCCceecCcccChHHHHHHHHcCCeeeCCCC
No 87
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=65.30 E-value=2.5e+02 Score=32.03 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=39.9
Q ss_pred HHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 101 AEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIEL 165 (376)
Q Consensus 101 ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~q 165 (376)
.++..-.+-+..|.=|+.-+..-|..+|.-.-+.-..++.....-+++.+++.++..+.+.....
T Consensus 785 ~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 849 (1201)
T PF12128_consen 785 KELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQR 849 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566677788888888887764333334444444455567777777766655555443
No 88
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=64.52 E-value=1.5e+02 Score=29.15 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHH-------HHHHHH-HHHHH
Q 017151 59 GLEQEIEILKQKIAACARENSNLQEELSE-------AYRIKG-QLADL 98 (376)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rEn~nLQEELsE-------AYRiK~-qLadL 98 (376)
.++.++..|+.++..+.+.-.+.|+||+= -|-+|+ |+|.|
T Consensus 78 k~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L 125 (258)
T PF15397_consen 78 KEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANL 125 (258)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34566777788888888888899999873 467777 77766
No 89
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=64.01 E-value=2.7e+02 Score=31.85 Aligned_cols=86 Identities=19% Similarity=0.298 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHH------HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 017151 235 SALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK------FISNAIAELRLCHSQLRVHVVNSLEEG 308 (376)
Q Consensus 235 saLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~------~i~ngis~L~~~h~~~R~~Im~lL~e~ 308 (376)
.+|+++++.+...+..++... =++|.+|+..-..++....-+.. -.++-+..|+..+...+..+-..+++.
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~---~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 679 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQ---EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEER 679 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777776666553 46777776655555443332222 234566777778888888888888888
Q ss_pred cchhhhhHHHHHhhh
Q 017151 309 RSHIKSISDVIEEKT 323 (376)
Q Consensus 309 ~s~iks~v~~i~ekl 323 (376)
...+..-++.++..+
T Consensus 680 ~~~~~~~l~~l~~~l 694 (1201)
T PF12128_consen 680 KEQIEEQLNELEEEL 694 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777777766
No 90
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.30 E-value=1e+02 Score=26.84 Aligned_cols=98 Identities=24% Similarity=0.245 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHH
Q 017151 61 EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEK 140 (376)
Q Consensus 61 EQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~ 140 (376)
-|-++.|+..|..+-.|...||++++..=+-|..+++=--.-...|.++ ...+..
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-------------------------~~~~~~ 69 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-------------------------RALKKE 69 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHH
Confidence 3557888888888888888888888877777777763311111111111 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhh
Q 017151 141 EELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (376)
Q Consensus 141 Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~ 183 (376)
-..+-+++.+++.|...+=--+-+-.+....|+.|+..+|+--
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3344466666666666544445556677888888887776543
No 91
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=63.01 E-value=2.1e+02 Score=30.32 Aligned_cols=35 Identities=14% Similarity=0.364 Sum_probs=25.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (376)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~ 167 (376)
+.+-++.+++.+.++++++++|+..+.....+..+
T Consensus 346 ~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~ 380 (754)
T TIGR01005 346 QADAAQARESQLVSDVNQLKAASAQAGEQQVDLDA 380 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHH
Confidence 45667778888889999999998876655444443
No 92
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=62.88 E-value=2.5e+02 Score=31.24 Aligned_cols=189 Identities=21% Similarity=0.212 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHh------hhhhc
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLC-----MQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC------ARENS 79 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLC-----MQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c------~rEn~ 79 (376)
.++-..+||.++.-+-.+|++=++-.= |+-.|..|-. |..|=+-=++|--+..++-+... +-.+-
T Consensus 424 ~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed----~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k 499 (698)
T KOG0978|consen 424 ALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFED----MQEQNQKLLQELREKDDKNFKLMSERIKANQKHK 499 (698)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017151 80 NLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELS 159 (376)
Q Consensus 80 nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~ 159 (376)
-|-++++.---...+|..--.+...+-..+|.|+++-|+.+..--+|==.--.--|--|-.--..-+.+..++.++++++
T Consensus 500 ~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~ 579 (698)
T KOG0978|consen 500 LLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSE 579 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHH
Q 017151 160 SENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALED 239 (376)
Q Consensus 160 s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEe 239 (376)
+.+.+..+.-.++..+++.....+. -|||
T Consensus 580 ~~le~i~~~~~e~~~ele~~~~k~~---------------------------------------------------rleE 608 (698)
T KOG0978|consen 580 AKLEQIQEQYAELELELEIEKFKRK---------------------------------------------------RLEE 608 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------HHHH
Q ss_pred HHHHHHhhHHHHhhh
Q 017151 240 ELEKTRSSVENLQSK 254 (376)
Q Consensus 240 e~e~lr~si~~LQsk 254 (376)
|++.|+-++..+++.
T Consensus 609 E~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 609 ELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHhccc
No 93
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.54 E-value=88 Score=25.82 Aligned_cols=94 Identities=20% Similarity=0.327 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHH
Q 017151 62 QEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKE 141 (376)
Q Consensus 62 QeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~E 141 (376)
...+.++.++......-..|.-++.|+-.+...|..| ....+.|- .|...|-++|..=+-
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l-----------~~d~~vyk-~VG~vlv~~~~~e~~-------- 69 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL-----------PDDTPVYK-SVGNLLVKTDKEEAI-------- 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchhHH-HhchhhheecHHHHH--------
Confidence 3456677777777777788888888888888877766 23444554 467788887754221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 017151 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 182 (376)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq 182 (376)
..++.|++.++..+......-..|+..+.++..+
T Consensus 70 -------~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 70 -------QELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 94
>PLN02939 transferase, transferring glycosyl groups
Probab=61.69 E-value=3e+02 Score=31.74 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=105.2
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHH------------------
Q 017151 17 ARIQQLEH------ERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIA------------------ 72 (376)
Q Consensus 17 aRI~qLEh------ERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~------------------ 72 (376)
+|++-|++ |.+.|+.-|--|=|--|-.+--...|-----||.-||..+|+|++.|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (977)
T PLN02939 150 ARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELD 229 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHH
Confidence 45555544 899999999999997766322111111122345556666666655442
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHHHH-------HH--HH----HHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH------
Q 017151 73 ACARENSNLQEELSEAYRIKGQLADL-------HA--AE----VIKNMEAEKQVKFFQGCMAAAFAERDNSVME------ 133 (376)
Q Consensus 73 ~c~rEn~nLQEELsEAYRiK~qLadL-------h~--ae----~~KN~e~EkqVkFfQs~vA~AFAERD~slmE------ 133 (376)
-.-.||--|.+.+ --+|..|.+. +. .| -+--.++|+..--.|.-|+.--.=++-++||
T Consensus 230 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (977)
T PLN02939 230 VLKEENMLLKDDI---QFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQ 306 (977)
T ss_pred HHHHHhHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHH
Confidence 1222343333322 1133333322 00 11 1223466666666666666655556666776
Q ss_pred -----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------HHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhh
Q 017151 134 -----AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQN------ATLRFDLEKQEELNESFKEVINKFYEIRQQSLE 202 (376)
Q Consensus 134 -----aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n------~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e 202 (376)
+-+.-|+.-.++++-++++.++..+++.+.+-.--. +-||..+.-++++.+.+..-|+-+-++-+.+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (977)
T PLN02939 307 DLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIK 386 (977)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333445555677888888888888887776543221 456777777788887777777777777666664
Q ss_pred h
Q 017151 203 V 203 (376)
Q Consensus 203 ~ 203 (376)
.
T Consensus 387 ~ 387 (977)
T PLN02939 387 E 387 (977)
T ss_pred H
Confidence 4
No 95
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.26 E-value=1.4e+02 Score=27.58 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=68.0
Q ss_pred hHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHH
Q 017151 45 YLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAF 124 (376)
Q Consensus 45 yl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AF 124 (376)
|-.=.|+=.-.=+..|-.+|+.++++.....+.=..++ .|-.|++--|. .......+|.++++||++
T Consensus 17 YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~---~eN~~L~epL~----~a~~e~~eL~k~L~~y~k------ 83 (201)
T PF13851_consen 17 YYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEIS---QENKRLSEPLK----KAEEEVEELRKQLKNYEK------ 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHH----HHHHHHHHHHHHHHHHHH------
Confidence 33444444444445555555555554433322211111 12222222222 224556777888888754
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHH-HHHHHHHHHhhhh
Q 017151 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFK-EVINKFYEIRQQS 200 (376)
Q Consensus 125 AERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~-kVi~KFyeiR~~~ 200 (376)
|+ +.+..+..|+..++..+.+.+.-+..|...+..+...-+-+. +.-..+|+|.+.+
T Consensus 84 ---dK----------------~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~ 141 (201)
T PF13851_consen 84 ---DK----------------QSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT 141 (201)
T ss_pred ---HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 445667777777888888888888888888777776665443 4444556666543
No 96
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=60.46 E-value=78 Score=24.55 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=25.0
Q ss_pred cchhHhHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 017151 228 TSTSKYISALEDELEKTRSSVENLQSKLRMGL 259 (376)
Q Consensus 228 tStskyisaLEee~e~lr~si~~LQskLR~gl 259 (376)
.+....+..|+..+.++...++..+..|.-|-
T Consensus 75 ~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~ 106 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSHAINFTEEALNSGD 106 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45677788888888888888888888887653
No 97
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=60.42 E-value=1.1e+02 Score=31.20 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 017151 53 HFQRTAGLEQEIEILKQKIAACARENSN 80 (376)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~n 80 (376)
...+.+.|+++|..|+.+++....+...
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 96 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDA 96 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777766655443333
No 98
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=60.11 E-value=1.9e+02 Score=28.82 Aligned_cols=62 Identities=11% Similarity=0.213 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHh
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c 74 (376)
..+-+..++.+++.+-++..+-+... +++.|- ++.-.+-...+|.+.+++++...+.++.+.
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f-~~~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~ 223 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAF-KQENGG-ILPDQEGDYYSEISEAQEELEAARLELNEA 223 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcc-cCccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777766 555552 222223345566666666666555544433
No 99
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.77 E-value=1.7e+02 Score=28.33 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=35.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 131 VMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 131 lmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
--|-..+|++.....-++.++..+..+++..+...+.--.+++.++...++-.+
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e 148 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLE 148 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777777777777776666555555555554444444
No 100
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=59.18 E-value=1.4e+02 Score=27.21 Aligned_cols=74 Identities=24% Similarity=0.351 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151 10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (376)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (376)
+..+.|.+.|..++.+..+|...|+.. ...-++. ..-....++-..|++++..|+++|....+-+...-+++-+
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~---~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEA-KKGREES---EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345667777777777777777777776 2212233 2222344455555556666666665444444444444433
No 101
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=58.53 E-value=1.4e+02 Score=26.81 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151 62 QEIEILKQKIAACARENSNLQEELSEAY 89 (376)
Q Consensus 62 QeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (376)
.+|++|+.+++..+.+...|..||.-..
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544433
No 102
>PRK09343 prefoldin subunit beta; Provisional
Probab=58.20 E-value=1.2e+02 Score=25.88 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHH
Q 017151 64 IEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEEL 143 (376)
Q Consensus 64 IE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~ 143 (376)
++.+++++..+...-..|.-++.|+-....-|..| +.+-+.|. .|...|--.|.+=+
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L-----------~~d~~VYk-~VG~vlv~qd~~e~----------- 72 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELEKL-----------PDDTPIYK-IVGNLLVKVDKTKV----------- 72 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCcchhHH-HhhHHHhhccHHHH-----------
Confidence 44555566666666666666666666555555544 33444554 36666665554322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
..++++|++-++..+.........|+..+.++..+..
T Consensus 73 ----~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 73 ----EKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1334455555555555555555566666655555554
No 103
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=57.82 E-value=2.8e+02 Score=30.07 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHH
Q 017151 234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVR 270 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r 270 (376)
..+|....+..+..|.+|+.-+.+ ++.|||..-.
T Consensus 359 k~~l~~~~e~~k~~ie~L~~el~~---~e~~lqEer~ 392 (546)
T PF07888_consen 359 KQALQHSAEADKDEIEKLSRELQM---LEEHLQEERM 392 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 335555556666667777766654 3667765443
No 104
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=57.78 E-value=1.3e+02 Score=26.36 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHH
Q 017151 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLE 177 (376)
Q Consensus 143 ~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~ 177 (376)
+..+.+++++..+.++-..+++.|...+.|+..+.
T Consensus 55 s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~ 89 (107)
T PF09304_consen 55 SRNQRIAELQAKIDEARRNLEDEKQAKLELESRLL 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777777776655556655553
No 105
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=57.67 E-value=88 Score=25.14 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 13 EALMARIQQLEHERDELRKDIEQLC 37 (376)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqLC 37 (376)
-.+..++..|.++|+++.|.|-++=
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3566777888888888888887653
No 106
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=57.56 E-value=1e+02 Score=25.08 Aligned_cols=79 Identities=25% Similarity=0.235 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhh-HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVAT-RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vAT-RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (376)
...++.+|...+++...++...+ ++| +++.. +++..=...|.+.|...+..+..+-..=...++.|.+|.+=..
T Consensus 32 ~~~~l~~l~~~~~~~~~~~~~~~----~~g-~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 32 LETQLQQLIKYREEYEQQALEKV----GAG-TSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444432 334 33333 3444446789999999999999998888899999999999888
Q ss_pred HHHHH
Q 017151 94 QLADL 98 (376)
Q Consensus 94 qLadL 98 (376)
.+..|
T Consensus 107 ~lekL 111 (141)
T TIGR02473 107 ALEKL 111 (141)
T ss_pred HHHHH
Confidence 88887
No 107
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=57.19 E-value=1.5e+02 Score=30.99 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
..++.+.-|..||.+.-+++-+.-+|=.. ..|.. -.-..+-.|+++|++.|...+.++++-.. +.+|-.
T Consensus 280 ~a~~~~~lI~~Le~qLa~~~aeL~~L~~~-~~p~s--PqV~~l~~rI~aLe~QIa~er~kl~~~~g-~~~la~------- 348 (434)
T PRK15178 280 TITAIYQLIAGFETQLAEAKAEYAQLMVN-GLDQN--PLIPRLSAKIKVLEKQIGEQRNRLSNKLG-SQGSSE------- 348 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCC--CchhHHHHHHHHHHHHHHHHHHHhhcCCC-CCchhH-------
Confidence 46788899999999999999988887332 23333 12245677899999999999999974321 112211
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHh
Q 017151 91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKA 137 (376)
Q Consensus 91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKa 137 (376)
.+ +.=.+|+-+..|=|...+.|.+--+++-+||.+.
T Consensus 349 ---~l--------aeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ 384 (434)
T PRK15178 349 ---SL--------SLFEDLRLQSEIAKARWESALQTLQQGKLQALRE 384 (434)
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 1113444555566666677777777777777653
No 108
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=57.09 E-value=39 Score=26.11 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=33.4
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017151 268 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 306 (376)
Q Consensus 268 ~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~ 306 (376)
++.+|+++-+..|..|..-|.+|++-|.+-|.=|+.-++
T Consensus 9 s~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 9 SYEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 456888888999999999999999999999998876543
No 109
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.07 E-value=53 Score=25.87 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 147 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 147 k~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
.+..+.+---.+++.+.+-...|.+|..++..++++.+
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555554
No 110
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.02 E-value=1.6e+02 Score=27.11 Aligned_cols=96 Identities=20% Similarity=0.313 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhh--HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVAT--RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vAT--RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (376)
+..|..=+..++.|+.+|++++.+.=--.. ..-..=+ +..-+...+|+.+-+.|..+...+-+|...|+.
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~--~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~------ 128 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQ--SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR------ 128 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 445555567788899999998765322111 1100000 122344455555555566666555555544443
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017151 90 RIKGQLADLHAAEVIKNMEAEKQVKF 115 (376)
Q Consensus 90 RiK~qLadLh~ae~~KN~e~EkqVkF 115 (376)
|.-+.+-|..+..-+||.=||+.+.=
T Consensus 129 kf~~~i~evqQk~~~kn~lLEkKl~~ 154 (201)
T PF13851_consen 129 KFESAIQEVQQKTGLKNLLLEKKLQA 154 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455668888888899999888753
No 111
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=56.94 E-value=2.9e+02 Score=29.97 Aligned_cols=244 Identities=25% Similarity=0.288 Sum_probs=121.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH-
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY- 89 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY- 89 (376)
+.+.+...|..|++|-++|++=.+-.=-=-.| .---.+++.-|.+.++-++..++.....|.-|..-|..|.+.-|
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~---~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~ 183 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRG---AREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLRE 183 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34556667777788888877755443111112 11235678888888888888888777766554444443332111
Q ss_pred ---HHHHHHHHH---HHHHHHhhHHHHHHHHHhhhhHH------HHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 017151 90 ---RIKGQLADL---HAAEVIKNMEAEKQVKFFQGCMA------AAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEE 157 (376)
Q Consensus 90 ---RiK~qLadL---h~ae~~KN~e~EkqVkFfQs~vA------~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E 157 (376)
++|.+|++= .-.--.+...|.+.+.|-+.--- .+++.||.. ..-=..|.. |
T Consensus 184 ~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--------------~~~r~~F~~---e 246 (546)
T KOG0977|consen 184 ELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--------------ADNREYFKN---E 246 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--------------ccchHHHHH---H
Confidence 344444421 12223445566666666553211 122223322 000001111 1
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHH
Q 017151 158 LSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISAL 237 (376)
Q Consensus 158 ~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaL 237 (376)
|+.+|.+ ++.+++....+|. +=|...|..+-+...-.. +. .+--+...
T Consensus 247 L~~Ai~e-------iRaqye~~~~~nR---~diE~~Y~~kI~~i~~~~---~~-------------------~~~~~~~~ 294 (546)
T KOG0977|consen 247 LALAIRE-------IRAQYEAISRQNR---KDIESWYKRKIQEIRTSA---ER-------------------ANVEQNYA 294 (546)
T ss_pred HHHHHHH-------HHHHHHHHHHHhH---HHHHHHHHHHHHHHHhhh---cc-------------------ccchhHHH
Confidence 1122221 2223333333333 666667766533322111 11 12223345
Q ss_pred HHHHHHHHhhHHHHhhhhhhhHHHHH-HhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017151 238 EDELEKTRSSVENLQSKLRMGLEIEN-HLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEE 307 (376)
Q Consensus 238 Eee~e~lr~si~~LQskLR~glEIEn-HLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e 307 (376)
-||+.++|..|+.|+.||.= ||.-| -|-++++.|+-...=--.+..-.|.+.-.--...|++.-.++-|
T Consensus 295 rEEl~~~R~~i~~Lr~klse-lE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~E 364 (546)
T KOG0977|consen 295 REELRRIRSRISGLRAKLSE-LESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVE 364 (546)
T ss_pred HHHHHHHHhcccchhhhhcc-ccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 68888999999988888752 23222 35566666665544444455555555555555666666555543
No 112
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.76 E-value=32 Score=34.45 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG--PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaG--pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (376)
.+-.|..-|..|.+.-.|++.||.-|=|+.|- +|.-.+.+|-++..-..|-.++|++++|....-+|
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d----------- 148 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERD----------- 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 35667778888888889999999888774432 23334667766655556666688888866554443
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017151 89 YRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ 168 (376)
Q Consensus 89 YRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~ 168 (376)
+++.+++. .|+-.+--+|+..|.+- -..++.-+++=..|+-. ++..=-=
T Consensus 149 --~qs~lDEk--------eEl~~ERD~yk~K~~RL-----------------N~ELn~~L~g~~~rivD----IDaLi~E 197 (319)
T PF09789_consen 149 --LQSLLDEK--------EELVTERDAYKCKAHRL-----------------NHELNYILNGDENRIVD----IDALIME 197 (319)
T ss_pred --HHHHHHHH--------HHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCCCCccc----HHHHHHH
Confidence 34444444 33444444454444332 11122223333334332 2222223
Q ss_pred hHHHhhhHHHHHHhhHhHHHHHHHHHHH
Q 017151 169 NATLRFDLEKQEELNESFKEVINKFYEI 196 (376)
Q Consensus 169 n~~Lq~dl~~~~eq~e~~~kVi~KFyei 196 (376)
|.-|+..+..+.+..++.+--|+||..+
T Consensus 198 NRyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 198 NRYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666677777777778887765
No 113
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.27 E-value=2e+02 Score=27.92 Aligned_cols=51 Identities=33% Similarity=0.404 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHH
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIA 72 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~ 72 (376)
.+.|...+..|+.+..-|.++++++ ....--...|-++|+.++..|+....
T Consensus 151 ~~~L~~~~~~L~~D~~~L~~~~~~l----------~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLDKQLEQL----------DELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555553 12222334566777777887777444
No 114
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.19 E-value=1.4e+02 Score=26.04 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=5.0
Q ss_pred HhhhHHHHHHhhH
Q 017151 172 LRFDLEKQEELNE 184 (376)
Q Consensus 172 Lq~dl~~~~eq~e 184 (376)
++.++..+.++..
T Consensus 170 ~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 170 LQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 115
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=55.94 E-value=1e+02 Score=27.70 Aligned_cols=98 Identities=21% Similarity=0.344 Sum_probs=51.8
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH-HHHHHHHHHHhhH-HHHHHHHHhhhhHHHHHhhhhhhhH
Q 017151 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQ-LADLHAAEVIKNM-EAEKQVKFFQGCMAAAFAERDNSVM 132 (376)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~q-LadLh~ae~~KN~-e~EkqVkFfQs~vA~AFAERD~slm 132 (376)
.|-..+++.+..|+.+.-..-.++..|++ +-|.|-++++ |-.+...+ .|. .....++-.+..+.+-+.
T Consensus 2 ~~~~ei~~~l~~l~~~vq~~e~~~k~Le~-~QE~f~~~~q~lq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------- 71 (182)
T PF01017_consen 2 EKQQEIEQKLQDLRNRVQETENDIKSLED-LQEEFDFQYQTLQQLQETE--QNSNALKEQLKQEQQQLQQMLN------- 71 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCTTTTT----STTTHHHHHCCCCCHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccc--chhhhhHHHHHHHHHHHHHHHH-------
Confidence 34556777777777777777777777754 5688888885 22221111 111 112223322222222222
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIEL 165 (376)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~q 165 (376)
....+...+..++.+.=..++.+++.+...
T Consensus 72 ---~L~~~R~~lv~~l~~~~~~~~~lq~~ll~~ 101 (182)
T PF01017_consen 72 ---ELDQKRKELVSKLKETLNCLEQLQSQLLDE 101 (182)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444556667777777777777555443
No 116
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=55.01 E-value=1.6e+02 Score=31.56 Aligned_cols=43 Identities=33% Similarity=0.449 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHH
Q 017151 20 QQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKI 71 (376)
Q Consensus 20 ~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl 71 (376)
+||.+|--+|-.-.||= |- | ..-+.| .|...||||...|++||
T Consensus 182 eQLRre~V~lentlEQE--qE----a--lvN~Lw-KrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQE--QE----A--LVNSLW-KRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHhhHHHHH--HH----H--HHHHHH-HHHHHHHHHHHHHHHHh
Confidence 55555555555555542 11 1 222333 45566666666666665
No 117
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=54.96 E-value=4 Score=44.49 Aligned_cols=154 Identities=23% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHH
Q 017151 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQL 95 (376)
Q Consensus 16 ~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qL 95 (376)
......|+.|.++|.+.++..=.| ++.++|- -..|++.++.++.+|...++...+|+..|..+=.=...|
T Consensus 207 ~~~k~kL~~E~~eL~~qLee~e~~------~~~l~r~----k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L 276 (859)
T PF01576_consen 207 TEQKAKLQSENSELTRQLEEAESQ------LSQLQRE----KSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQL 276 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH----HHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHH
Confidence 334444555666666655554433 2233332 345888899999999999999999988877654322222
Q ss_pred HHHHHHHHHhhHH-------HHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017151 96 ADLHAAEVIKNME-------AEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ 168 (376)
Q Consensus 96 adLh~ae~~KN~e-------~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~ 168 (376)
-+..--+-..-.+ +..++.|++..+-+.+..|-..+-|+- ..+..++.+.+..++++...+...++.
T Consensus 277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaK------KkL~~~L~el~e~le~~~~~~~~LeK~ 350 (859)
T PF01576_consen 277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAK------KKLERKLQELQEQLEEANAKVSSLEKT 350 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222233 445566666666666666554444432 345678999999999999999999998
Q ss_pred hHHHhhhHHHHHHhhHh
Q 017151 169 NATLRFDLEKQEELNES 185 (376)
Q Consensus 169 n~~Lq~dl~~~~eq~e~ 185 (376)
...|+.++..+.-..+.
T Consensus 351 k~rL~~EleDl~~eLe~ 367 (859)
T PF01576_consen 351 KKRLQGELEDLTSELEK 367 (859)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888776655553
No 118
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=54.17 E-value=4.1e+02 Score=30.98 Aligned_cols=143 Identities=22% Similarity=0.276 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHh----hhhhHHHHHHHHHHHHHhh---hhhcchHHH
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQR----TAGLEQEIEILKQKIAACA---RENSNLQEE 84 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QR----tA~LEQeIE~Lkkkl~~c~---rEn~nLQEE 84 (376)
.|++-....+||++||++--|+-.| |+- --.-+-..|| .|.++|.|+-||.++.+.+ ++......|
T Consensus 346 ~egfddk~~eLEKkrd~al~dvr~i--~e~-----k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kne 418 (1265)
T KOG0976|consen 346 AEGFDDKLNELEKKRDMALMDVRSI--QEK-----KENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNE 418 (1265)
T ss_pred hcchhHHHHHHHHHHHHHHHhHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHH
Confidence 4667778899999999999998765 332 1233444444 4667788999998877664 344445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 85 LSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (376)
Q Consensus 85 LsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~ 164 (376)
|++|-- =+|+.|++++ -+++|.--||.- -|-++.+ ++-+ +.+.++.--|++-++.+...
T Consensus 419 L~~a~e----kld~mgthl~---mad~Q~s~fk~L------------ke~aegs-rrra-IeQcnemv~rir~l~~sle~ 477 (1265)
T KOG0976|consen 419 LQEALE----KLDLMGTHLS---MADYQLSNFKVL------------KEHAEGS-RRRA-IEQCNEMVDRIRALMDSLEK 477 (1265)
T ss_pred HHHHHH----HHHHHhHHHH---HHHHHHhhHHHH------------HHhhhhh-HhhH-HHHHHHHHHHHHHHhhChhh
Confidence 666642 2466676665 468888888764 3444443 2233 34577888888888888887
Q ss_pred HHhhhHHHhhhHHHHHHhhHhH
Q 017151 165 LKKQNATLRFDLEKQEELNESF 186 (376)
Q Consensus 165 qk~~n~~Lq~dl~~~~eq~e~~ 186 (376)
|+..- .++.+++..|+.-
T Consensus 478 qrKVe----qe~emlKaen~rq 495 (1265)
T KOG0976|consen 478 QRKVE----QEYEMLKAENERQ 495 (1265)
T ss_pred hcchH----HHHHHHHHHHHHH
Confidence 77543 3444455544433
No 119
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=53.76 E-value=46 Score=28.10 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=6.8
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhhHHHH
Q 017151 106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (376)
Q Consensus 106 N~e~EkqVkFfQs~vA~AFAERD~slmEaE 135 (376)
+.+|++|+|.|.. .|.-++..|..||+..
T Consensus 28 ~~eLe~q~k~F~~-qA~~V~~wDr~Lv~n~ 56 (116)
T PF05064_consen 28 NKELEEQEKEFNE-QATQVNAWDRQLVENG 56 (116)
T ss_dssp ----------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5688999999986 5788999999999854
No 120
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=53.00 E-value=12 Score=36.04 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.3
Q ss_pred hhHhHHHHHHHHHHHHhhHHHH
Q 017151 230 TSKYISALEDELEKTRSSVENL 251 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~L 251 (376)
..+=|+|||.||-.||+.|.++
T Consensus 120 AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999875
No 121
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=52.55 E-value=3.6e+02 Score=29.84 Aligned_cols=213 Identities=19% Similarity=0.232 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHH
Q 017151 61 EQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEK 140 (376)
Q Consensus 61 EQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~ 140 (376)
+.|++.|+..+.-...+=..+..-=....+++-.|+++ +.---...|+-|-|-|...++-+|+|-.-|.+ .
T Consensus 120 ~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~---~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~------~ 190 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKL---EQLLEIFIENAANETEEKLEQEWAEREAGLKD------E 190 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 33455555544444433333333333333444444443 12222344555667888888888877655443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhccccc
Q 017151 141 EELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSA 220 (376)
Q Consensus 141 Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~ 220 (376)
+..|- ++++++++.+......+.+-|.++..++..-+ .+. ..-..--+.+|.+-+
T Consensus 191 ~~~~~-------~q~~~le~ki~~lq~a~~~t~~el~~~~s~~d----------------ee~--~~k~aev~lim~eLe 245 (629)
T KOG0963|consen 191 EQNLQ-------EQLEELEKKISSLQSAIEDTQNELFDLKSKYD----------------EEV--AAKAAEVSLIMTELE 245 (629)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh----------------hhh--HHHHHHHHHHHHHHH
Confidence 33343 44444444444443344444444433332211 000 001111223444433
Q ss_pred ccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhh--HHHHHHhHHhHHHHHHhhhhhHHHHHH---HHHHHHHHHH
Q 017151 221 EMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG--LEIENHLKKSVRELEKKIIHSDKFISN---AIAELRLCHS 295 (376)
Q Consensus 221 ~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~g--lEIEnHLkk~~r~LEk~q~~~d~~i~n---gis~L~~~h~ 295 (376)
+ +..-|-.||.|.+.|+....+--+..+-| =.|.+--. .--..|..|.- -|-.++.-|+
T Consensus 246 ~--------aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~--------~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 246 D--------AQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGS--------VLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2 55678889999999998888777777766 22222111 11113444433 3333333344
Q ss_pred HHHHH---HHHhhhhccchhhhhHHHHHhhh
Q 017151 296 QLRVH---VVNSLEEGRSHIKSISDVIEEKT 323 (376)
Q Consensus 296 ~~R~~---Im~lL~e~~s~iks~v~~i~ekl 323 (376)
+.|.. =++-|+.+....+++++.+.+|+
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322 13445666666667777777777
No 122
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=51.82 E-value=2.8e+02 Score=28.26 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHhhhHHHHH
Q 017151 140 KEELMSQKFNEFQTRLEELSSEN----IELKKQNATLRFDLEKQE 180 (376)
Q Consensus 140 ~Ee~m~qk~~e~e~R~~E~~s~~----~~qk~~n~~Lq~dl~~~~ 180 (376)
.-..|-..|++|++--+||+..+ ...+..|.+|+.+...++
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~ 72 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLT 72 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666555544333 334455555555444433
No 123
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.78 E-value=2.4e+02 Score=27.43 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=51.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHH
Q 017151 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (376)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaE 135 (376)
|+.-++.=++.|...+.+.-.|...|...+..+-.++-.|.+. ...++.++.=.+..++. ...-|.. |.+
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~-------~~~L~~e~~~Lk~~~~e-~~~~D~~--eL~ 212 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRER-------KAELEEELENLKQLVEE-IESCDQE--ELE 212 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh-hhhcCHH--HHH
Confidence 6666666566677777777667666666666655555555544 44455555555554433 4444543 333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 136 KAKEKEELMSQKFNEFQTRLEELSSENIE 164 (376)
Q Consensus 136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~ 164 (376)
.+|..=.....++..+...+.+++..+..
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~ 241 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEE 241 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333444444444444444443333
No 124
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=50.99 E-value=1.4e+02 Score=24.62 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchHH----HhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 017151 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYLA----VATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqL--------CMQQaGpgyl~----vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~ 79 (376)
...+...+.+|+.+..|...=++.| |.-..||-||- -|--=+--|...++-.|..|.+++..+...=.
T Consensus 19 ~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 19 LQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778887777776655544 77777776642 22333556667777777778777777777767
Q ss_pred chHHHHHHHH
Q 017151 80 NLQEELSEAY 89 (376)
Q Consensus 80 nLQEELsEAY 89 (376)
++|..|-+++
T Consensus 99 e~q~~l~~~~ 108 (110)
T TIGR02338 99 ELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHh
Confidence 7777766654
No 125
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=50.76 E-value=3.2e+02 Score=28.67 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=53.4
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHH---------hHHHHHHHHHHH
Q 017151 78 NSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEK---------AKEKEELMSQKF 148 (376)
Q Consensus 78 n~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEK---------aKE~Ee~m~qk~ 148 (376)
|.-+.+||+.+=.++ |-|--..+ .|+=-+=|+..+...|.+-+..|.+||. |+..-..+.+.+
T Consensus 39 ~~pv~~el~kvk~l~-----l~Gqt~~~---fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l 110 (560)
T PF06160_consen 39 NLPVADELSKVKKLN-----LTGQTEEK---FEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQL 110 (560)
T ss_pred cCCHHHHHHHHHhcc-----ccHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 378888887664432 22211111 2222233778888999999999999985 454444555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHH
Q 017151 149 NEFQTRLEELSSENIELKKQNATLRFDLEKQE 180 (376)
Q Consensus 149 ~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~ 180 (376)
..++..+..+...+.+......+-+.....++
T Consensus 111 ~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~ 142 (560)
T PF06160_consen 111 DEIEEDIKEILDELDELLESEEKNREEIEELK 142 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444343333333
No 126
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=50.69 E-value=38 Score=28.01 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhh
Q 017151 234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIH 278 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~ 278 (376)
|..+..++++.+.+|+.+|.+|+. |.++-+++|.-+|+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~-------Le~qk~E~EN~EIv 40 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKE-------LEAQKTEAENLEIV 40 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 567889999999999999999985 56677788877765
No 127
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=50.58 E-value=2.6e+02 Score=27.51 Aligned_cols=220 Identities=22% Similarity=0.324 Sum_probs=113.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhH
Q 017151 59 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 138 (376)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaK 138 (376)
.++.++..++++......+.+.++.|++.+-..|+.|-.|.+-=--.|+.+- |-+..-+..-.
T Consensus 40 ~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk-----------------eE~~~~~~eee 102 (309)
T PF09728_consen 40 RLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK-----------------EESKRRAREEE 102 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 3677788889999999999999999999999999999988553333343332 22222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhccc
Q 017151 139 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLD 218 (376)
Q Consensus 139 E~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~d 218 (376)
++-..++.+|. ..+.+.+..|.++..-|..+..+-..+.+.. +.|-.=|++|-..... ++--
T Consensus 103 ~kR~el~~kFq---~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKl----K~l~eQye~rE~~~~~-----------~~k~ 164 (309)
T PF09728_consen 103 EKRKELSEKFQ---ATLKDIQAQMEEQSERNIKLREENEELREKL----KSLIEQYELREEHFEK-----------LLKQ 164 (309)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhccchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----------HhhH
Confidence 44555555553 3344444555555544444333333332222 2222345555222221 1100
Q ss_pred ccccccccCcchhHhHHHHHHHHHHHHhhHHHHhh-------hhhhhHHHHHHhHHhHHHHHHhhhhhHHH--HHHHHHH
Q 017151 219 SAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS-------KLRMGLEIENHLKKSVRELEKKIIHSDKF--ISNAIAE 289 (376)
Q Consensus 219 s~~~WSfn~tStskyisaLEee~e~lr~si~~LQs-------kLR~glEIEnHLkk~~r~LEk~q~~~d~~--i~ngis~ 289 (376)
-.----+ +..||-. .......-......++. .+..-.+=|.+|+..+.. +.|+| +...|+-
T Consensus 165 keLE~Ql---~~AKl~q-~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~------Y~~Kf~efq~tL~k 234 (309)
T PF09728_consen 165 KELEVQL---AEAKLEQ-QQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNL------YSEKFEEFQDTLNK 234 (309)
T ss_pred HHHHHHH---HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 0000000 0112211 11112222223333333 455555566666655543 55555 3445555
Q ss_pred HHHHHHHHHHHH------HHhhhhccchhh--------hhHHHHHhhh
Q 017151 290 LRLCHSQLRVHV------VNSLEEGRSHIK--------SISDVIEEKT 323 (376)
Q Consensus 290 L~~~h~~~R~~I------m~lL~e~~s~ik--------s~v~~i~ekl 323 (376)
=--.+...|.++ ++-|+.+...++ .+++++++|.
T Consensus 235 SNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 235 SNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555666677776 455777776665 4777888776
No 128
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.58 E-value=1.7e+02 Score=25.47 Aligned_cols=77 Identities=27% Similarity=0.289 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcch-HHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNL-QEELSEA 88 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nL-QEELsEA 88 (376)
+...+...|.+|+.+-.+|++++-.|--+-+. -+.+ .|-=+-..++.|+++|+.|..+|...-...... .+|...+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~--t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~ 150 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEP--TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKL 150 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 46677888999999999999999888876555 1111 112245677889999999999998876643332 3344433
Q ss_pred H
Q 017151 89 Y 89 (376)
Q Consensus 89 Y 89 (376)
.
T Consensus 151 ~ 151 (169)
T PF07106_consen 151 E 151 (169)
T ss_pred H
Confidence 3
No 129
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.47 E-value=2.1e+02 Score=27.45 Aligned_cols=34 Identities=38% Similarity=0.400 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 017151 149 NEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 182 (376)
Q Consensus 149 ~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq 182 (376)
.++++.+.++++.+.++++||..|-.||+.....
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678899999999999999999999999766543
No 130
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=49.98 E-value=2e+02 Score=26.08 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=16.2
Q ss_pred hHHHHHHhhHhHHHHHHHHHHHhhhhh
Q 017151 175 DLEKQEELNESFKEVINKFYEIRQQSL 201 (376)
Q Consensus 175 dl~~~~eq~e~~~kVi~KFyeiR~~~~ 201 (376)
...+..+.-+....+|+.|.+...++.
T Consensus 117 ~~e~~~~~~~~i~~ai~~~a~~~gy~~ 143 (170)
T COG2825 117 EAEEEQKLLEKIQRAIESVAEKGGYSL 143 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcce
Confidence 334444555566678888777764443
No 131
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.82 E-value=5.2e+02 Score=30.88 Aligned_cols=135 Identities=22% Similarity=0.238 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh------hccc----ccchhhhhccccccc
Q 017151 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV------LETS----WEDKCACLLLDSAEM 222 (376)
Q Consensus 153 ~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~------~~~s----~~~Kc~~Ll~ds~~~ 222 (376)
.|+++++..+.+.++--+++|-.-++ +++.+.+...|..-+.++-+-... ..+. --.||++-+--+.
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~-- 934 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSD-- 934 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCc--
Confidence 44555555555555555555533334 555555555555555443222211 1110 1124444443332
Q ss_pred ccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 223 WSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 302 (376)
Q Consensus 223 WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im 302 (376)
|.. +..-+-++-||.+.+.++.+++.|-- -.+|+...+-+++++- . =-.++|-+++.-|...+..+=
T Consensus 935 ~~i--~k~q~~l~~le~~~~~~e~e~~~L~e-------~~~~~~~k~~E~~~~~---~-e~~~~~~E~k~~~~~~k~~~e 1001 (1293)
T KOG0996|consen 935 RNI--AKAQKKLSELEREIEDTEKELDDLTE-------ELKGLEEKAAELEKEY---K-EAEESLKEIKKELRDLKSELE 1001 (1293)
T ss_pred ccH--HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHH
Confidence 211 22334556666666666666555532 2334444444444321 1 123455555555555554443
Q ss_pred H
Q 017151 303 N 303 (376)
Q Consensus 303 ~ 303 (376)
+
T Consensus 1002 ~ 1002 (1293)
T KOG0996|consen 1002 N 1002 (1293)
T ss_pred H
Confidence 3
No 132
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=49.03 E-value=2.2e+02 Score=26.36 Aligned_cols=109 Identities=20% Similarity=0.323 Sum_probs=68.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh-HHHHHHHHHHHhhhhhhhhcccccchhhh
Q 017151 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES-FKEVINKFYEIRQQSLEVLETSWEDKCAC 214 (376)
Q Consensus 136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~-~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~ 214 (376)
+.|+....+++=+.+|+.++.++...+.+. .+.+-..+...+++-.. =+..|..+|+=.|.........|+.+
T Consensus 61 ~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~---~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~~--- 134 (215)
T PF07083_consen 61 KRKEIKKEYSKPIKEFEAKIKELIAPIDEA---SDKIDEQIKEFEEKEKEEKREKIKEYFEEMAEEYGVDPEPFERI--- 134 (215)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHhhh---
Confidence 456777888899999999999988777654 45555555555544332 23455555555544333222334433
Q ss_pred hcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhh
Q 017151 215 LLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 254 (376)
Q Consensus 215 Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQsk 254 (376)
-.+.|.=.++|+.+-+..++..+.++.....-+-..
T Consensus 135 ----~~~~wlnks~s~kk~~eei~~~i~~~~~~~~~~~~~ 170 (215)
T PF07083_consen 135 ----IKPKWLNKSYSLKKIEEEIDDQIDKIKQDLEEIKAA 170 (215)
T ss_pred ----cchHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445687778888887777777666666555544443
No 133
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=48.07 E-value=2.3e+02 Score=26.25 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHhhcC--CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH--
Q 017151 14 ALMARIQQLEHERDELRKDIE---QLCMQQAG--PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS-- 86 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIE---qLCMQQaG--pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs-- 86 (376)
.|...|.+|+.+-++|+++-. +++.-|.. ..|-+.-+ =+.|..+....||-+|+.+|-..-..+..+...+.
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~-~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~ 94 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEA-ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDK 94 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777654 44554443 33433333 34677788888999999988887777777777766
Q ss_pred --HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 87 --EAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (376)
Q Consensus 87 --EAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~ 162 (376)
+-|+++.++-.|.+. |+ |+.|.|.++.-.+=..+-+++.+-+.++.+++..+
T Consensus 95 ~~el~k~~~~l~~L~~L------------------~~------dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 95 DEELLKTKDELKHLKKL------------------SE------DKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHH------------------HH------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777766332 11 44455555555555555566666666666555544
No 134
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=47.72 E-value=1.8e+02 Score=24.80 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=49.7
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhH
Q 017151 98 LHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (376)
Q Consensus 98 Lh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl 176 (376)
+|+...-.-..+..++.=++.-++..=+++|.+--+.+..+ .....+=..++..+.++++.+.+...+|.-|-..+
T Consensus 53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666556666777777788888888888887766654433 33334444566666667777777777776665544
No 135
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.55 E-value=3.1e+02 Score=30.51 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=27.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
....+.+|..+.+++....++|.+|+-++-+--+
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~ 450 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKR 450 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888999999999999888765433
No 136
>PHA02562 46 endonuclease subunit; Provisional
Probab=47.42 E-value=3e+02 Score=27.47 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHH
Q 017151 28 ELRKDIEQLCMQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEEL 85 (376)
Q Consensus 28 ELrKDIEqLCMQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEEL 85 (376)
++.+.|+.|=+|-.+ -+-+....++...=...+..+|+.+++++..+.++...++.++
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l 236 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEI 236 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544443 2222222222222222333445555555555555555554443
No 137
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.04 E-value=96 Score=29.80 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=54.0
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 017151 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGR 309 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e~~ 309 (376)
.+..|+.|..+++.+.+.++.|++..+=+ ++.......++. +.. .-+-++||...=..||++|+.+.
T Consensus 127 l~~~Id~L~~QiE~~E~E~E~L~~~~kKk----k~~~~~~~r~~~----l~~-----~ierhk~Hi~kLE~lLR~L~N~~ 193 (233)
T PF04065_consen 127 LKDSIDELNRQIEQLEAEIESLSSQKKKK----KKDSTKQERIEE----LES-----RIERHKFHIEKLELLLRLLDNDE 193 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC----ccCccchhHHHH----HHH-----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999865432 111111111111 111 11235677777778899999998
Q ss_pred chhhhhHHHHHhhhhc
Q 017151 310 SHIKSISDVIEEKTQH 325 (376)
Q Consensus 310 s~iks~v~~i~ekl~~ 325 (376)
..-.. |+.|.|-|..
T Consensus 194 l~~e~-V~~ikediey 208 (233)
T PF04065_consen 194 LDPEQ-VEDIKEDIEY 208 (233)
T ss_pred CCHHH-HHHHHHHHHH
Confidence 87744 4568888844
No 138
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.00 E-value=4.3e+02 Score=29.12 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=39.4
Q ss_pred HHhhcC--CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 017151 37 CMQQAG--PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (376)
Q Consensus 37 CMQQaG--pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (376)
|.+.+| |..|.-|..++......++.=|+.|..+....-.+...+...+.++=+.+..|...
T Consensus 493 iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~ 556 (782)
T PRK00409 493 IAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEK 556 (782)
T ss_pred HHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667 55667777888888878888777777765555555555555555555555554433
No 139
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=46.81 E-value=1.8e+02 Score=26.58 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=49.6
Q ss_pred hHHHHhhhhhhhH-HHHHHhHHhHHHHHHhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhhccchhhh
Q 017151 247 SVENLQSKLRMGL-EIENHLKKSVRELEKKIIHSDKFISNAIAEL-----------RLCHSQLRVHVVNSLEEGRSHIKS 314 (376)
Q Consensus 247 si~~LQskLR~gl-EIEnHLkk~~r~LEk~q~~~d~~i~ngis~L-----------~~~h~~~R~~Im~lL~e~~s~iks 314 (376)
.+-+|+.|-|-|- .....++..+..+..++.-+|.|.++|+... -..|-..=.+.+..+.++..+|..
T Consensus 124 e~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~ 203 (219)
T PF08397_consen 124 ELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQE 203 (219)
T ss_dssp HHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666432 1234456668889999999999999998653 233444445677777777777777
Q ss_pred hHHHHHhh
Q 017151 315 ISDVIEEK 322 (376)
Q Consensus 315 ~v~~i~ek 322 (376)
.++..++-
T Consensus 204 ~~~~w~~~ 211 (219)
T PF08397_consen 204 KLDDWQEL 211 (219)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 76666553
No 140
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=46.62 E-value=14 Score=39.62 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=34.4
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHH
Q 017151 126 ERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181 (376)
Q Consensus 126 ERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~e 181 (376)
|||.+.||+|+|. .+-|+-.||-.-..|+.|.-.||...++++-
T Consensus 33 E~dr~~WElERaE------------lqariAfLqgErk~qenlk~dl~rR~kmlE~ 76 (577)
T KOG0642|consen 33 ERDRARWELERAE------------LQARIAFLQGERKGQENLKMDLVRRIKMLEF 76 (577)
T ss_pred hhhhhheehhhhh------------HHHHHHHHhcchhhhHHHHHHHHHHHhcccc
Confidence 8999999999986 5667777777777788887777777766553
No 141
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=46.40 E-value=81 Score=23.58 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 017151 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 182 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq 182 (376)
+.+.+++.++..|++.....+..+..|...+..+..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666666666655555555555555555444
No 142
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=46.24 E-value=60 Score=28.91 Aligned_cols=67 Identities=15% Similarity=0.356 Sum_probs=40.0
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHH
Q 017151 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLE----ELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYE 195 (376)
Q Consensus 125 AERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~----E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFye 195 (376)
.+||+.|-.-.+...--+.+-+++.+++.... +|+..+...+ ++.+|..-|......+. +.|-++++
T Consensus 37 ~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~-~~~ai~~al~~akakn~---~av~allD 107 (155)
T PF06810_consen 37 KEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK-KDSAIKSALKGAKAKNP---KAVKALLD 107 (155)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCH---HHHHHhcC
Confidence 34444444433322233444566777766666 7777777766 67888887777777665 55554443
No 143
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.21 E-value=1.4e+02 Score=26.37 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhH
Q 017151 139 EKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (376)
Q Consensus 139 E~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl 176 (376)
+.......++.+....++..+.+++..|.+...|+.++
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444456666667777766666666666666555543
No 144
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=45.49 E-value=3.7e+02 Score=27.87 Aligned_cols=65 Identities=25% Similarity=0.462 Sum_probs=50.2
Q ss_pred HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 017151 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (376)
Q Consensus 124 FAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~ 191 (376)
|++-.+.+-+|...=+. |-.-+..|+..+..+.+++.........|...|...+.-.+.+..+|+
T Consensus 16 ~~~Lh~~i~~cd~~L~~---le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~ 80 (508)
T PF04129_consen 16 FADLHNQIQECDSILES---LEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFID 80 (508)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444456666655543 445567889999999999999999999999999998888887777776
No 145
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=45.28 E-value=3.4e+02 Score=27.45 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017151 16 MARIQQLEHERDELRKDIEQLC 37 (376)
Q Consensus 16 ~aRI~qLEhERDELrKDIEqLC 37 (376)
.+-+..-+.|||.....+|||=
T Consensus 15 ~~eLe~cq~ErDqyKlMAEqLq 36 (319)
T PF09789_consen 15 SQELEKCQSERDQYKLMAEQLQ 36 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444558888888888774
No 146
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=45.16 E-value=6.2e+02 Score=30.39 Aligned_cols=240 Identities=22% Similarity=0.240 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhcCCchHHHhhHHHHHhh---hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQLCM-QQAGPSYLAVATRMHFQRT---AGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCM-QQaGpgyl~vATRM~~QRt---A~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
|..-|.++.-++.+|++ +|.-. |+. .+.+++++.+=. ..|+-++..|+..|....+.|.|++..+...--
T Consensus 470 L~e~i~~lk~~~~el~~--~q~~l~q~~----~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~ 543 (1317)
T KOG0612|consen 470 LEETIEKLKSEESELQR--EQKALLQHE----QKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNS 543 (1317)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444555556666664 22111 111 234555555422 244555556666666666677777666666555
Q ss_pred HHHHHH---HH-------------HHHHHHhhHHHHHH--------HHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHH
Q 017151 91 IKGQLA---DL-------------HAAEVIKNMEAEKQ--------VKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQ 146 (376)
Q Consensus 91 iK~qLa---dL-------------h~ae~~KN~e~Ekq--------VkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~q 146 (376)
.+.+|. +. |.+++++-++-+.. ..--|.+--.---++-.-..++|+.++..-..+-
T Consensus 544 ~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e 623 (1317)
T KOG0612|consen 544 LRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISE 623 (1317)
T ss_pred HHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 11 33333333322221 1111111111111222223344555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HhhhHHHhhhHHH--HHHhhHhHHHHHHHHHHHhhhhhhhhcccccch-hh
Q 017151 147 KFNEFQTRLEELSSENIEL----------KKQNATLRFDLEK--QEELNESFKEVINKFYEIRQQSLEVLETSWEDK-CA 213 (376)
Q Consensus 147 k~~e~e~R~~E~~s~~~~q----------k~~n~~Lq~dl~~--~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~K-c~ 213 (376)
.+.+++.++..+++..+.. ++.|..-..+.++ ++.+.+--++++..+++- -..+|--+-...+ |.
T Consensus 624 ~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq--~~~E~~~~~L~~~e~~ 701 (1317)
T KOG0612|consen 624 IIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQ--ENAEHHRLRLQDKEAQ 701 (1317)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHH
Confidence 5666666666555544322 2222222223333 444555555555555442 2223311111111 11
Q ss_pred hhcccccccccccCcchhHhHHH----HHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHH
Q 017151 214 CLLLDSAEMWSFNDTSTSKYISA----LEDELEKTRSSVENLQSKLRMGLEIENHLKKSVREL 272 (376)
Q Consensus 214 ~Ll~ds~~~WSfn~tStskyisa----LEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~L 272 (376)
.-....|--.+-|+=-|..+ ++++++.|++.. +|++ +=.|||.++.+.+
T Consensus 702 ---~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~--~~~~-----~~~~~l~r~~~~~ 754 (1317)
T KOG0612|consen 702 ---MKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDY--KQSQ-----EKLNELRRSKDQL 754 (1317)
T ss_pred ---HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhh--hhhc-----cchhhhhhhHHHH
Confidence 11234465556677667777 788888887643 4444 4456666655443
No 147
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=45.00 E-value=44 Score=28.86 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (376)
Q Consensus 134 aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~ 167 (376)
+.|.+.+|+...+.+.+++.++++++..+++|+.
T Consensus 100 ~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 100 ARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677888889999999999999999888764
No 148
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.93 E-value=6e+02 Score=30.12 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHH
Q 017151 155 LEELSSENIELKKQNATLRFDLEKQEELNESFK 187 (376)
Q Consensus 155 ~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~ 187 (376)
++.|...+.+-+++...||.|++.++.+....+
T Consensus 399 i~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~ 431 (1200)
T KOG0964|consen 399 IEKLKRGINDTKEQENILQKEIEDLESELKEKL 431 (1200)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777777777666655333
No 149
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.92 E-value=1.4e+02 Score=26.55 Aligned_cols=66 Identities=26% Similarity=0.343 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 017151 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQE 83 (376)
Q Consensus 16 ~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQE 83 (376)
..|+-.+-++-..+++.++.+=-|-.+.. ..+.+......+.+..||++|+++|.....|...|+.
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~--~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESAS--EAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443321 1233335666777888888888877775555444443
No 150
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=44.80 E-value=7.2 Score=41.17 Aligned_cols=104 Identities=30% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHH------------Hh----hHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLA------------VA----TRMHFQRTAGLEQEIEILKQKIAACAREN 78 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~------------vA----TRM~~QRtA~LEQeIE~Lkkkl~~c~rEn 78 (376)
+...-..|..|||.|+--++.|-.-+++++.++ .+ +.=...|..-|+.|-..|+.+.++...+.
T Consensus 403 l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~ 482 (713)
T PF05622_consen 403 LEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEESEEEK 482 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhccchhhH
Confidence 333344555577778777777654333211111 11 11234577778888888887776664433
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 017151 79 -SNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQG 118 (376)
Q Consensus 79 -~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs 118 (376)
.-|+.+|.+|-+.|..|-.-+...-.+..+++.|+.=-|.
T Consensus 483 ~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 483 LEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQK 523 (713)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999988888887777666666677666654443
No 151
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=44.77 E-value=2.5e+02 Score=26.49 Aligned_cols=82 Identities=13% Similarity=0.232 Sum_probs=56.4
Q ss_pred hhhcccccccccccCcch--hHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHH
Q 017151 213 ACLLLDSAEMWSFNDTST--SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAEL 290 (376)
Q Consensus 213 ~~Ll~ds~~~WSfn~tSt--skyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L 290 (376)
+++-.=+...|..++..+ |.|++.|=.+.......++.+-...++--|+.+-|=..+=. ..-..+-.|.|.+
T Consensus 71 ~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~------~~~~~Lveg~s~v 144 (234)
T PF10474_consen 71 QILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIF------FAFETLVEGYSRV 144 (234)
T ss_pred HHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------HHHHHHHHHHHhc
Confidence 333344556799997554 99999999999999999988877777777766654333221 2223446677877
Q ss_pred HHHHHHHHHH
Q 017151 291 RLCHSQLRVH 300 (376)
Q Consensus 291 ~~~h~~~R~~ 300 (376)
+|+-..-|+-
T Consensus 145 kKCs~eGRal 154 (234)
T PF10474_consen 145 KKCSNEGRAL 154 (234)
T ss_pred cCCChhhHHH
Confidence 7777776663
No 152
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.42 E-value=72 Score=31.39 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 017151 17 ARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLA 96 (376)
Q Consensus 17 aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLa 96 (376)
+++-+-..|-.-|-+|.++-=-+-. -+..+.|+=+. |-+++||||-.+|.+|...++-+|-|.+|+. +.|.-+-
T Consensus 51 r~lS~~~~e~e~l~~~l~etene~~--~~neL~~ek~~-~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d---d~keiIs 124 (246)
T KOG4657|consen 51 RALSQSQVELENLKADLRETENELV--KVNELKTEKEA-RQMGIEQEIKATQSELEVLRRNLQLLKEEKD---DSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHH
Confidence 3555555566666666665332211 22335555554 4468999999999999999999999999998 4444444
Q ss_pred HH
Q 017151 97 DL 98 (376)
Q Consensus 97 dL 98 (376)
.-
T Consensus 125 ~k 126 (246)
T KOG4657|consen 125 QK 126 (246)
T ss_pred HH
Confidence 33
No 153
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=44.40 E-value=4.4e+02 Score=28.49 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=25.0
Q ss_pred ccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhh
Q 017151 206 TSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 206 ~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL 255 (376)
+...+|-.-||.|+. .+|+.|+.-++.-.+++-.|++.+
T Consensus 379 ~~l~~k~~~lL~d~e-----------~ni~kL~~~v~~s~~rl~~L~~qW 417 (594)
T PF05667_consen 379 LKLKKKTVELLPDAE-----------ENIAKLQALVEASEQRLVELAQQW 417 (594)
T ss_pred HHHHHHHHHHhcCcH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666777776 456777777777777776666643
No 154
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.22 E-value=4.9e+02 Score=28.99 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=14.2
Q ss_pred hhHhHHHHHHHHHHHHhhHH
Q 017151 230 TSKYISALEDELEKTRSSVE 249 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~ 249 (376)
-.++|.+++.+.+.|+..+.
T Consensus 472 ~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 472 KDREIRARDRRIERLEKELE 491 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46778888888777776543
No 155
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=44.05 E-value=2e+02 Score=24.37 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHh----------------hcCCchHHHhh--HHHHHhhhhhHHHHHHHHHHH
Q 017151 25 ERDELRKDIEQLCMQ----------------QAGPSYLAVAT--RMHFQRTAGLEQEIEILKQKI 71 (376)
Q Consensus 25 ERDELrKDIEqLCMQ----------------QaGpgyl~vAT--RM~~QRtA~LEQeIE~Lkkkl 71 (376)
.-++.-+.|..+.-| .+|+||-.||- |=++.+|...=.+|..+=..+
T Consensus 41 ~i~~~~~~i~~ia~qt~lLalNAsIEAaraGe~G~gF~vvA~eir~LA~~t~~~~~~I~~~i~~i 105 (213)
T PF00015_consen 41 DISEILSLINEIAEQTNLLALNASIEAARAGEAGRGFAVVADEIRKLAEQTSESAKEISEIIEEI 105 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHhhhhhccccchhcccchhHHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 334445566666654 36799988886 457788877777776654433
No 156
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=44.00 E-value=75 Score=25.94 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhh--hhhh---hcccccchhhhhccccc
Q 017151 155 LEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQ--SLEV---LETSWEDKCACLLLDSA 220 (376)
Q Consensus 155 ~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~--~~e~---~~~s~~~Kc~~Ll~ds~ 220 (376)
+.+.++-..+...+...|+.-+...++.-....+ +.+||-=... +.+. .++..+.+|+||=-|..
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~-L~~YY~s~~w~~d~e~~e~g~~~~~~~~gVLSEDai 71 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQPDYRK-LRDYYGSEEWMEDYEASEQGDLPTDGKCGVLSEDAI 71 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCcHhHHHHHHHHhCCCCCCCcccCccCchHH
Confidence 3444444444444555555555555544443333 3457721111 1111 46778899999976654
No 157
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=43.92 E-value=63 Score=23.77 Aligned_cols=42 Identities=14% Similarity=0.340 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHH
Q 017151 91 IKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVME 133 (376)
Q Consensus 91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmE 133 (376)
++..+++.|...+ -..|+..=+.||.|-+.+.|...-.+++.
T Consensus 5 ~~~~~~~~y~~~f-t~~El~~i~~FY~Sp~Gqk~~~~~~~~~~ 46 (64)
T PF09832_consen 5 MIDQMAPIYAEHF-TEEELDAILAFYESPLGQKIVAKEPALMQ 46 (64)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CHHHHHHHHHHHCCHHhHHHHHHhHHHHH
Confidence 4555666665544 45678899999999999999887776665
No 158
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=43.89 E-value=69 Score=25.75 Aligned_cols=79 Identities=29% Similarity=0.435 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-hh------------c------------------CCch-----HHHhhHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCM-QQ------------A------------------GPSY-----LAVATRMHF 54 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCM-QQ------------a------------------Gpgy-----l~vATRM~~ 54 (376)
..+.+.+++..|+...+++..=++.|.- +. + |.|| +.=|...+.
T Consensus 4 ~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~ 83 (120)
T PF02996_consen 4 ELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLK 83 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHH
Confidence 3567889999999988888888887774 43 1 2222 234778888
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (376)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (376)
.|...|+..++.+.+++......-..++..+++.|
T Consensus 84 ~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 84 KRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888888888888877766
No 159
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.86 E-value=3.2e+02 Score=26.77 Aligned_cols=44 Identities=32% Similarity=0.413 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHH
Q 017151 150 EFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 193 (376)
Q Consensus 150 e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KF 193 (376)
++.+.++++++...+....-.+|+.+.+.+.++-+.+.+..|.|
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~ 104 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNEL 104 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444344445555555555555444444443
No 160
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=43.42 E-value=84 Score=25.69 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhh
Q 017151 232 KYISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskL 255 (376)
.=|+.||.|+-.|...|.-|..+|
T Consensus 61 ~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 61 EEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888887777655
No 161
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=42.91 E-value=1.5e+02 Score=32.96 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 017151 146 QKFNEFQTRLEELSSENIELKK 167 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~ 167 (376)
..+.++++|+..|..++.-...
T Consensus 300 ~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 300 GALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666666555554444
No 162
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=42.90 E-value=4.8e+02 Score=28.64 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Q 017151 65 EILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAA 122 (376)
Q Consensus 65 E~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~ 122 (376)
..+-+.+++.-.+|.||.+-.++|..+-...-.| ..|-..+-.+.--||+.|-+
T Consensus 267 ~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l----~ek~r~l~~D~nk~~~~~~~ 320 (622)
T COG5185 267 HIINTDIANLKTQNDNLYEKIQEAMKISQKIKTL----REKWRALKSDSNKYENYVNA 320 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHH
Confidence 3455566666678999999999999887766555 22333444555556666554
No 163
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=42.48 E-value=3.6e+02 Score=26.88 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=58.6
Q ss_pred HHHHHHH---HHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017151 92 KGQLADL---HAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQ 168 (376)
Q Consensus 92 K~qLadL---h~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~ 168 (376)
|..|+++ |+.+..-|-+|.- |+-+-+-++.-.|-+=+.|-..+++++.-.++-...++.+|+.
T Consensus 83 k~~l~evEekyrkAMv~naQLDN--------------ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~ 148 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDN--------------EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRA 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhch--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655 5555555554421 1222234566666666666666677777777778889999999
Q ss_pred hHHHhhhHHHHHHhhHhHHHHHH
Q 017151 169 NATLRFDLEKQEELNESFKEVIN 191 (376)
Q Consensus 169 n~~Lq~dl~~~~eq~e~~~kVi~ 191 (376)
.+.|+.++..++++..--...|.
T Consensus 149 ~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 149 HDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876555554
No 164
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=42.29 E-value=1.1e+02 Score=30.40 Aligned_cols=51 Identities=29% Similarity=0.505 Sum_probs=38.8
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHH
Q 017151 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFIS 284 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ 284 (376)
...|++.|+++++.+.+.+++|..+|.-.= +.+++...+++....+++=+.
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~ 290 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIE 290 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999998764432 666677777766666555443
No 165
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=42.15 E-value=28 Score=27.39 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=28.8
Q ss_pred hhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHh
Q 017151 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQ 252 (376)
Q Consensus 214 ~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQ 252 (376)
.++...-+.||+.+ ...||+.|+.|...+++.+.+-+
T Consensus 12 ~~ig~dLs~lSv~E--L~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 12 HEIGEDLSLLSVEE--LEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred cccCCCchhcCHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566777776 67899999999999998887644
No 166
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=42.02 E-value=40 Score=28.75 Aligned_cols=52 Identities=37% Similarity=0.549 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhh-hhhhHHHHHHhHHhHHHHHH-hhhhhHHHHHH
Q 017151 234 ISALEDELEKTRSSVENLQSK-LRMGLEIENHLKKSVRELEK-KIIHSDKFISN 285 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQsk-LR~glEIEnHLkk~~r~LEk-~q~~~d~~i~n 285 (376)
+..|++++..+.+.++.|++. +|.--+++|..++-.+..+. ++-....|+..
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ 66 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKD 66 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666 35566899988888776653 33344555444
No 167
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=41.90 E-value=73 Score=24.39 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151 58 AGLEQEIEILKQKIAACARENSNLQEELSE 87 (376)
Q Consensus 58 A~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (376)
..+.+++..+++++.....+|..|+.|.+.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888999888888999999988764
No 168
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=41.37 E-value=54 Score=26.72 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=39.4
Q ss_pred cCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151 41 AGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (376)
Q Consensus 41 aGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (376)
++|..+..-.-+-+..+..+.+.++.|+..|...-.+|..|++++.+
T Consensus 59 ~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 59 VWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred CCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777778888999999999999999999999999875
No 169
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=41.29 E-value=1.9e+02 Score=23.32 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=29.4
Q ss_pred HhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151 48 VATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (376)
Q Consensus 48 vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (376)
=|...+-.|...|+..++++.+.+......=..++..+.+.|
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777778888888888888877776666666666555543
No 170
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.15 E-value=2.8e+02 Score=30.50 Aligned_cols=97 Identities=25% Similarity=0.223 Sum_probs=64.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 017151 10 NESEALMARIQQLEHERDELRKDIEQ---LCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (376)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEq---LCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (376)
.-.|++..|+++||.|-+.||.|+-+ -|++--.-+ -.-|++- ..-++|+|.|-.-|++.-..|+-|..-||
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~---~~lr~~~---~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL---QELRKYE---KESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34678899999999999999988743 343211100 0012211 22467899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017151 87 EAYRIKGQLADLHAAEVIKNMEAEKQ 112 (376)
Q Consensus 87 EAYRiK~qLadLh~ae~~KN~e~Ekq 112 (376)
--=|||--|=--.|...-+-+.++.+
T Consensus 612 aEtriKldLfsaLg~akrq~ei~~~~ 637 (697)
T PF09726_consen 612 AETRIKLDLFSALGDAKRQLEIAQGQ 637 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999976554445444444444333
No 171
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=41.02 E-value=54 Score=27.95 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH
Q 017151 54 FQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRI 91 (376)
Q Consensus 54 ~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRi 91 (376)
.+.+..|-++++.||+.+....-||..|+-|....++.
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778899999999999999999887765543
No 172
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=41.00 E-value=73 Score=25.28 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=32.0
Q ss_pred hHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151 45 YLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (376)
Q Consensus 45 yl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (376)
+.++++-+....+..+..+++.++++......||.+|+=|.+.
T Consensus 25 ~~a~~~v~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 25 ISALGVVYSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555557777788999999999999999999877653
No 173
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=39.35 E-value=2.1e+02 Score=25.82 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=42.4
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 017151 50 TRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (376)
Q Consensus 50 TRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (376)
..++..+.+.|++.++...+++.++..-=...+.++.+|.|.+..+++|
T Consensus 76 v~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL 124 (152)
T PF07321_consen 76 VASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAEL 124 (152)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778899999999999999999888888899999999999887766
No 174
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=39.17 E-value=2.1e+02 Score=24.74 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhh
Q 017151 142 ELMSQKFNEFQTRLEELSSENIELK-KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSL 201 (376)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qk-~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~ 201 (376)
...++++.+++..+.++++.+.++- ++...++.+.+.+....+-+-..|.-|++-....+
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~ 66 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDEL 66 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHhc
Confidence 4456899999999999999988765 78888899999999999999999999988764433
No 175
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=39.15 E-value=4.4e+02 Score=26.97 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=24.1
Q ss_pred hcCCchHHHhh--HHHHHhhhhhHHHHHHHHH
Q 017151 40 QAGPSYLAVAT--RMHFQRTAGLEQEIEILKQ 69 (376)
Q Consensus 40 QaGpgyl~vAT--RM~~QRtA~LEQeIE~Lkk 69 (376)
-+|-||=.||. |=++.||+.--++|..+=.
T Consensus 391 E~GrGFAVVA~EVR~LA~~s~~at~~I~~~i~ 422 (554)
T PRK15041 391 EQGRGFAVVAGEVRNLAQRSAQAAREIKSLIE 422 (554)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789988886 7799999998888887654
No 176
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=38.73 E-value=2.6e+02 Score=25.51 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=26.3
Q ss_pred HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (376)
Q Consensus 124 FAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~ 164 (376)
.|.|=..+++ .|.+++..+|..+-..+.++...+.+
T Consensus 22 ~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 57 (204)
T PRK00373 22 LAERGHKLLK-----DKRDELIMEFFDILDEAKKLREEVEE 57 (204)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665 78888888888888888877666654
No 177
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=38.64 E-value=2.8e+02 Score=24.52 Aligned_cols=61 Identities=28% Similarity=0.431 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHHHHHHHhhhhHHH
Q 017151 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHA-----AEVIKNMEAEKQVKFFQGCMAA 122 (376)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~-----ae~~KN~e~EkqVkFfQs~vA~ 122 (376)
+-.+||.+.+.|-++ |+.-..++=..|=..-..|+++.. .+...-....+.+|||..-.-.
T Consensus 28 ~l~~LEae~q~L~~k------E~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~ 93 (126)
T PF09403_consen 28 ELNQLEAEYQQLEQK------EEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKE 93 (126)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHH
Confidence 356677777776663 444444444555555556665533 3334445566788888754433
No 178
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.55 E-value=73 Score=23.54 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 017151 59 GLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (376)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (376)
.||+|-+.||..-.....+|..|+.|-.. +++++..|
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~---L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEK---LRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 37888888888888888888888887654 56666555
No 179
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=38.04 E-value=1.6e+02 Score=25.57 Aligned_cols=54 Identities=24% Similarity=0.190 Sum_probs=34.9
Q ss_pred cccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhh
Q 017151 224 SFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKII 277 (376)
Q Consensus 224 Sfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~ 277 (376)
+||=.+.++..++||..+.....+|+-||.-++---..=.+-.++++.||++-.
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~ 72 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAK 72 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445456888899999999999999998887665332222333444444444433
No 180
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.77 E-value=1.6e+02 Score=24.34 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHH----hhhHHHh---hhHHHHHHhhHhHHHHHHHHHHHhhhhh
Q 017151 150 EFQTRLEELSSENIELK----KQNATLR---FDLEKQEELNESFKEVINKFYEIRQQSL 201 (376)
Q Consensus 150 e~e~R~~E~~s~~~~qk----~~n~~Lq---~dl~~~~eq~e~~~kVi~KFyeiR~~~~ 201 (376)
.++.|+.+|+...--|. +||++|- ..++++.+|.. -+++||-+++....
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr---~L~~kl~~~~~~~~ 60 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR---LLTEKLKDLQPSAI 60 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhccccc
Confidence 56677777776665554 4666653 44444444444 88999988874433
No 181
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=37.54 E-value=1.4e+02 Score=30.20 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQ 35 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEq 35 (376)
.+..++..|+++|+++.|.|-.
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888865
No 182
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.51 E-value=4.1e+02 Score=26.07 Aligned_cols=95 Identities=23% Similarity=0.211 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHH
Q 017151 58 AGLEQEIEILKQKIAACARENSNLQEELSEAYRI-KGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEK 136 (376)
Q Consensus 58 A~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRi-K~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEK 136 (376)
+|=++-++.|.++....-.|-..=-+++++|-|| |.-|+.|- ||+-++--.-.==+.-+.|+|-
T Consensus 29 ~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Ls---------------q~E~~mlKtqrv~e~nlre~e~ 93 (222)
T KOG3215|consen 29 DGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLS---------------QDEPSMLKTQRVIEMNLREIEN 93 (222)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHh---------------hcccchHHHHHHHHHHHHHHHH
Confidence 3445667777777665555544444459999999 55577773 3433333333333445567776
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 137 AKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (376)
Q Consensus 137 aKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~ 167 (376)
--+..+.|-++|.+-..-++.+-.++.+.|+
T Consensus 94 ~~q~k~Eiersi~~a~~kie~lkkql~eaKi 124 (222)
T KOG3215|consen 94 LVQKKLEIERSIQKARNKIELLKKQLHEAKI 124 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777778888877777777777766664
No 183
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=37.37 E-value=6e+02 Score=27.96 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhh
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRT 57 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRt 57 (376)
...++..+..+.++-..-+.+++..+.+.-| ...+++-+.+-
T Consensus 177 ~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~----~~~~~~~l~~~ 218 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELEHVTNSISELESVLKS----AQEERRVLADS 218 (670)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHH
Confidence 3455666666666666677888999988877 34444444443
No 184
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.33 E-value=2.5e+02 Score=23.61 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhH
Q 017151 155 LEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYI 234 (376)
Q Consensus 155 ~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyi 234 (376)
++.|++.+..-=.--.-|||++.+++++|..+..=++---.=|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r------------------------------------- 48 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR------------------------------------- 48 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------------------------------
Q ss_pred HHHHHHHHHHHhhHHHHhhhhh
Q 017151 235 SALEDELEKTRSSVENLQSKLR 256 (376)
Q Consensus 235 saLEee~e~lr~si~~LQskLR 256 (376)
++|+.+++.|+..-..-|.+||
T Consensus 49 ~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 49 EELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 185
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=37.29 E-value=3.4e+02 Score=25.13 Aligned_cols=71 Identities=17% Similarity=0.312 Sum_probs=39.7
Q ss_pred HHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHH
Q 017151 112 QVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQ----------KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181 (376)
Q Consensus 112 qVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~q----------k~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~e 181 (376)
.|+|.|+-+-..++=+|...-=.+..|..|+.+.+ ++.+++..+.+|+-+....+..+.+...++..++.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888888555444444544444443 34455555555554433333334444445544444
Q ss_pred h
Q 017151 182 L 182 (376)
Q Consensus 182 q 182 (376)
.
T Consensus 167 ~ 167 (190)
T PF05266_consen 167 E 167 (190)
T ss_pred H
Confidence 3
No 186
>smart00338 BRLZ basic region leucin zipper.
Probab=36.55 E-value=1.6e+02 Score=22.05 Aligned_cols=37 Identities=35% Similarity=0.499 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 017151 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 182 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq 182 (376)
+.+.+++.++..|++...+.......|+.++..++.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665555555555555555555444
No 187
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=36.42 E-value=3.6e+02 Score=25.12 Aligned_cols=58 Identities=29% Similarity=0.371 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CchHHHhhHHHHHhhhhhHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAG----PSYLAVATRMHFQRTAGLEQEIEILKQKI 71 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaG----pgyl~vATRM~~QRtA~LEQeIE~Lkkkl 71 (376)
+...++..++++-..|..|+++|.-|-.. .+-+..+|-=-++|+-.|.+.|.++...+
T Consensus 42 ~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i 103 (264)
T PF06008_consen 42 PQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNI 103 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777654321 33444555555666666666666666643
No 188
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=36.20 E-value=7.2e+02 Score=28.59 Aligned_cols=70 Identities=26% Similarity=0.264 Sum_probs=54.2
Q ss_pred HhhhhHHHHHhhh--hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 115 FFQGCMAAAFAER--DNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 115 FfQs~vA~AFAER--D~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
..++..|.|.-+- ||+..|+-+.|+.+-+++---.+|.+|+.+++...--.-+-.|||+++...+++...
T Consensus 369 ll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 369 LLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELA 440 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455555565555 899999999999999999999999999999998776666667888888776555433
No 189
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=36.01 E-value=3.2e+02 Score=26.08 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=67.2
Q ss_pred HHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhh
Q 017151 121 AAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQS 200 (376)
Q Consensus 121 A~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~ 200 (376)
.+.|+.-...=||.-+.| .++++++..++..+.....- +..-..+.+..+.|.|.+++ |--++
T Consensus 85 gTdfS~~~~~dwEevrLk-------rELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~-----YK~~q-- 147 (195)
T PF12761_consen 85 GTDFSATEGTDWEEVRLK-------RELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLD-----YKERQ-- 147 (195)
T ss_pred CCCCCCCCCCchHHHHHH-------HHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHH-----HHHHH--
Confidence 567777667778877777 89999999999877766652 22233445556666664333 21121
Q ss_pred hhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHH
Q 017151 201 LEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEK 274 (376)
Q Consensus 201 ~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk 274 (376)
|.+..+ +..+.+.=+.++.+.++.++..|+-| |.||..+-.+|++
T Consensus 148 ---------------l~~~~~----~~~~~~~~l~~v~~Dl~~ie~QV~~L----------e~~L~~k~~eL~~ 192 (195)
T PF12761_consen 148 ---------------LRELEE----GRSKSGKNLKSVREDLDTIEEQVDGL----------ESHLSSKKQELQQ 192 (195)
T ss_pred ---------------HHhhhc----cCCCCCCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 111111 22234445667777777777777755 5788888888775
No 190
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=35.85 E-value=1.9e+02 Score=25.95 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=26.4
Q ss_pred HHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 123 AFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (376)
Q Consensus 123 AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~ 164 (376)
.+|.|=+.+++ .|-+++..+|..+-..+.++...+.+
T Consensus 11 ~~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 47 (196)
T PF01813_consen 11 KLAKRGHKLLK-----KKRDALIREFRKLIKEAEELREELEE 47 (196)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777 77888888888877777776655544
No 191
>PRK14160 heat shock protein GrpE; Provisional
Probab=35.74 E-value=3.6e+02 Score=25.68 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=36.0
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhh-hhhhHHHHHHhHHhHHHHHHh
Q 017151 230 TSKYISALEDELEKTRSSVENLQSK-LRMGLEIENHLKKSVRELEKK 275 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQsk-LR~glEIEnHLkk~~r~LEk~ 275 (376)
.-+=+.+|+++++.++..++.|+.+ ||.--++||-=+|-.|+.+.-
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888888888887766 578889999999988888763
No 192
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=35.64 E-value=50 Score=28.18 Aligned_cols=33 Identities=39% Similarity=0.639 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 017151 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (376)
Q Consensus 60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (376)
.|.|.+-|+++++-.-.+|..|..||+. |+.+.
T Consensus 13 vEEEa~LlRRkl~ele~eN~~l~~EL~k-yk~~~ 45 (96)
T PF11365_consen 13 VEEEAELLRRKLSELEDENKQLTEELNK-YKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 3788999999999999999999999998 76654
No 193
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=35.23 E-value=57 Score=27.37 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=29.7
Q ss_pred CchHHHhhHHHHHhhhhhHHHHHHHHHHH------HHhhhhhcchHHHH
Q 017151 43 PSYLAVATRMHFQRTAGLEQEIEILKQKI------AACARENSNLQEEL 85 (376)
Q Consensus 43 pgyl~vATRM~~QRtA~LEQeIE~Lkkkl------~~c~rEn~nLQEEL 85 (376)
.|-++.-+.+.-.. .+|..||+.|+.|+ .-..-||..|++|+
T Consensus 13 ~g~l~~~~~~~~e~-~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~ 60 (86)
T PF12711_consen 13 DGKLPSESYLEEEN-EALKEEIQLLREQVEHNPEVTRFAMENIRLREEL 60 (86)
T ss_pred cCCCCccchhHHHH-HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 34444556666666 88999999999865 45666787777776
No 194
>PLN02939 transferase, transferring glycosyl groups
Probab=35.11 E-value=7.8e+02 Score=28.64 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=20.9
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 017151 129 NSVMEAEKAKEKEELMSQKFNEFQTRLEE 157 (376)
Q Consensus 129 ~slmEaEKaKE~Ee~m~qk~~e~e~R~~E 157 (376)
.+|-+.+|.--..|+.-.+++-++.|+.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 153 QALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 44555555555556667899999999998
No 195
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=34.96 E-value=47 Score=31.20 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151 56 RTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (376)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (376)
++..||.|-+.||.++....++|.-||.|..+
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~e 137 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQE 137 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 57899999999999999999999999998765
No 196
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=34.67 E-value=1.6e+02 Score=30.65 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=47.3
Q ss_pred HHHHHHHHH---HhhHHHHhhhhh-hhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 017151 236 ALEDELEKT---RSSVENLQSKLR-MGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSH 311 (376)
Q Consensus 236 aLEee~e~l---r~si~~LQskLR-~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e~~s~ 311 (376)
-|.++.+++ ++..++++++|+ ||.-+++ +.-.|-|.-.-+- =++|.+.+.++.|-.+|+.-...+.-.+++
T Consensus 121 ~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~----~q~~l~k~~k~l~-e~~~~l~a~re~fL~~~~~~~~~irq~~~~ 195 (377)
T KOG2896|consen 121 NLQRQIEALSKKRAHLEKTKQKLEDKRQQFNA----SQVKLQKQLKSLI-ELRNELVAKRELFLEQRIQDTFKIRQDGSP 195 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHH-HHHHHHHHHHHhhHhHHHhhhhhhhccCcc
Confidence 355566666 888899999999 8855442 2222222222111 257888888999988888777777777777
Q ss_pred h
Q 017151 312 I 312 (376)
Q Consensus 312 i 312 (376)
+
T Consensus 196 ~ 196 (377)
T KOG2896|consen 196 L 196 (377)
T ss_pred h
Confidence 7
No 197
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=34.28 E-value=1.6e+02 Score=30.88 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 017151 18 RIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (376)
Q Consensus 18 RI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (376)
+|..||.+-.+|.+.|+.|=.+-+.|.+. +.--..+.+.|-++++.++++|..+..+=..|.++|.|+
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELY---DQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhc---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666665555555321 111112455566666666666666655555555555443
No 198
>PRK01156 chromosome segregation protein; Provisional
Probab=34.07 E-value=6.4e+02 Score=27.31 Aligned_cols=25 Identities=4% Similarity=0.268 Sum_probs=12.5
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhh
Q 017151 231 SKYISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 231 skyisaLEee~e~lr~si~~LQskL 255 (376)
-.||..++.++..+...+..|.+++
T Consensus 468 ~e~i~~~~~~i~~l~~~i~~l~~~~ 492 (895)
T PRK01156 468 NHIINHYNEKKSRLEEKIREIEIEV 492 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444444443
No 199
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=33.80 E-value=8.7e+02 Score=28.81 Aligned_cols=185 Identities=22% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCccchhhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhh---------------------
Q 017151 1 MDENSKEKE-NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTA--------------------- 58 (376)
Q Consensus 1 m~e~~~e~~-~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA--------------------- 58 (376)
|+|.-++-. ++.|++.-||..|+-+-.=|+..+|-= .|.|- +++...|-+.-
T Consensus 322 mAEERaesLQ~eve~lkEr~deletdlEILKaEmeek----G~~~~--~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek 395 (1243)
T KOG0971|consen 322 MAEERAESLQQEVEALKERVDELETDLEILKAEMEEK----GSDGQ--AASSYQFKQLEQQNARLKDALVRLRDLSASEK 395 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCc--ccchHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred ----hhHHHHHHHHHHHHHhhhhhcchHHHHHHH----HHHHHHHHHHHHHH------HHhhHHHHHHHHHhhhhHHHHH
Q 017151 59 ----GLEQEIEILKQKIAACARENSNLQEELSEA----YRIKGQLADLHAAE------VIKNMEAEKQVKFFQGCMAAAF 124 (376)
Q Consensus 59 ----~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA----YRiK~qLadLh~ae------~~KN~e~EkqVkFfQs~vA~AF 124 (376)
.+..|.|.++-.+..+-|--.+|+.++.+| --+|.|++--.||| ..||.++|..|+-.---|+.-=
T Consensus 396 ~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 396 QDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 017151 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (376)
Q Consensus 125 AERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~ 191 (376)
|=+|--=-=+|-.+|-|-..-.++....--..|++...+.--+--++++.-+.+..+....+-.+|.
T Consensus 476 alee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlq 542 (1243)
T KOG0971|consen 476 ALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQ 542 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 200
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.34 E-value=2.2e+02 Score=28.84 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQ 35 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEq 35 (376)
.+..++..|++||+.+.|.|-+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888866
No 201
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=32.97 E-value=3.9e+02 Score=24.51 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=26.2
Q ss_pred HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIE 164 (376)
Q Consensus 124 FAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~ 164 (376)
.|.|=..+++ .|.+++..+|..+-..+.++...+.+
T Consensus 20 ~a~rg~~lLk-----~Krd~L~~e~~~~~~~~~~~r~~~~~ 55 (209)
T TIGR00309 20 MAKRGYSLLK-----LKRDALIMEFRQILERAKDIKNKMEQ 55 (209)
T ss_pred HHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665 78888888888888888877766653
No 202
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=32.95 E-value=2.7e+02 Score=22.67 Aligned_cols=74 Identities=28% Similarity=0.289 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 89 YRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSEN 162 (376)
Q Consensus 89 YRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~ 162 (376)
-+....++.=+..=..+..+++..+--|..-+-..=+.|..|+-.|++....-....+.+..+...+..+.+.+
T Consensus 24 ~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~ 97 (126)
T PF13863_consen 24 ERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEI 97 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455667777777777777777777777777777777544444444444444444444433
No 203
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=32.90 E-value=3.9e+02 Score=24.53 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchHHHhhH-HHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG-PSYLAVATR-MHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaG-pgyl~vATR-M~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (376)
....+..++..|..+|+.+-.++.. .++.-= |+.|....+ -...-.+-.+.++.++.. +......|...|+.|..
T Consensus 145 ~L~~ll~~l~~l~~eR~~~~~~lk~-~~~~d~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~-~~~~i~~~~~~Q~~ll~ 221 (296)
T PF13949_consen 145 QLRELLNKLEELKKEREELLEQLKE-KLQNDDISKLLSELNKNGSADFEALFEEELKKFDP-LQNRIQQNLSKQEELLQ 221 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHSSS--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccHHHHHHHhhccCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999887 444222 444442111 111223334444554432 33344445555555443
No 204
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.78 E-value=8.5e+02 Score=28.37 Aligned_cols=136 Identities=19% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH-------------------------------HHHHHHh
Q 017151 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL-------------------------------HAAEVIK 105 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL-------------------------------h~ae~~K 105 (376)
+.+|.-+|++++.+.....-+|..|++++-.---.++||-|. -++.+++
T Consensus 666 I~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e 745 (970)
T KOG0946|consen 666 IRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSE 745 (970)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHH
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 017151 106 NMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (376)
Q Consensus 106 N~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~ 185 (376)
++.++-+--.-+.-.-.--+.+-.-=-.++.|--.-.+...-...-+.=++.+.. ..+.+..+..+|.++..+++|-+-
T Consensus 746 ~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~-l~e~~~~l~~~q~e~~~~keq~~t 824 (970)
T KOG0946|consen 746 NKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKN-LSEESTRLQELQSELTQLKEQIQT 824 (970)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 017151 186 FKEVINKF 193 (376)
Q Consensus 186 ~~kVi~KF 193 (376)
...-|.-|
T Consensus 825 ~~~~tsa~ 832 (970)
T KOG0946|consen 825 LLERTSAA 832 (970)
T ss_pred HHHHHHhh
No 205
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=32.46 E-value=2.7e+02 Score=25.47 Aligned_cols=105 Identities=24% Similarity=0.300 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHH------Hhhhhhhh----------
Q 017151 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYE------IRQQSLEV---------- 203 (376)
Q Consensus 140 ~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFye------iR~~~~e~---------- 203 (376)
+=|.|+-.++++++--.-....+.+-.-+-.|||.+|..+....-.+..|.||==+ +.|..-+.
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~~~ 86 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTLLQ 86 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 34566777777777444444556666678889999998886554444466655433 33333322
Q ss_pred ---hcccccchhhhhcccccccccccC-cchhHhHHHHHHHHHHH
Q 017151 204 ---LETSWEDKCACLLLDSAEMWSFND-TSTSKYISALEDELEKT 244 (376)
Q Consensus 204 ---~~~s~~~Kc~~Ll~ds~~~WSfn~-tStskyisaLEee~e~l 244 (376)
.-+.|+..---|+.--.+.|-|-- -+...=|++|+--.+.|
T Consensus 87 eck~R~~fe~qLE~lm~qHKdLwefh~~erLa~EI~~l~~sKEQL 131 (134)
T PF15233_consen 87 ECKLRLDFEEQLEDLMGQHKDLWEFHMPERLAREICALESSKEQL 131 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHH
Confidence 133344444445555566677763 35666666666555443
No 206
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.34 E-value=4.6e+02 Score=25.12 Aligned_cols=146 Identities=22% Similarity=0.283 Sum_probs=80.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151 10 NESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (376)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (376)
+.+..|-+-|.-.+..-.-|..+|+-||-|-= -+.=..+.+..|+-|++.||.-+...--+|..|+......=
T Consensus 22 ~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~-------s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlE 94 (193)
T PF14662_consen 22 DENAKLQRSVETAEEGNAQLAEEITDLRKQLK-------SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLE 94 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777788888875310 11233445555666666665544444444444443333222
Q ss_pred HHHHHHHHHHH--------------------HHH-HhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHH
Q 017151 90 RIKGQLADLHA--------------------AEV-IKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKF 148 (376)
Q Consensus 90 RiK~qLadLh~--------------------ae~-~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~ 148 (376)
|=...|..=++ .++ .++..|-.||--|=+- +..||..+
T Consensus 95 kE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l----~~~~da~l----------------- 153 (193)
T PF14662_consen 95 KEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL----ICQRDAIL----------------- 153 (193)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHH-----------------
Confidence 22211110000 111 3555666666444332 33344433
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhh
Q 017151 149 NEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (376)
Q Consensus 149 ~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~ 183 (376)
++-..++.+|...+.+..-+...|+.+...+++|.
T Consensus 154 ~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 154 SERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677777777777888888888888888876
No 207
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=32.28 E-value=5.6e+02 Score=26.09 Aligned_cols=76 Identities=34% Similarity=0.385 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcCCchHHHhhHHHHHh-----------hhhhHHH----HHHHHHHHH
Q 017151 10 NESEALMARIQQLEHERDELRKDIEQ--LCMQQAGPSYLAVATRMHFQR-----------TAGLEQE----IEILKQKIA 72 (376)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEq--LCMQQaGpgyl~vATRM~~QR-----------tA~LEQe----IE~Lkkkl~ 72 (376)
.-.-.|+.||++|.+|.+.|..+.|+ =|+ |-.++.+ ...|++| +++|++++.
T Consensus 77 ~isN~LlKkl~~l~keKe~L~~~~e~EEE~l-----------tn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~ 145 (310)
T PF09755_consen 77 FISNTLLKKLQQLKKEKETLALKYEQEEEFL-----------TNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIE 145 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44567889999999988888877776 333 2222222 2234432 578999999
Q ss_pred HhhhhhcchHHHHHHHHHHHHHHH
Q 017151 73 ACARENSNLQEELSEAYRIKGQLA 96 (376)
Q Consensus 73 ~c~rEn~nLQEELsEAYRiK~qLa 96 (376)
..-++-.++|.+|..-.|-|=-|-
T Consensus 146 ~Le~e~~~~q~~le~Lr~EKVdlE 169 (310)
T PF09755_consen 146 RLEKEKSAKQEELERLRREKVDLE 169 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhHH
Confidence 999988999999987666665443
No 208
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=32.23 E-value=2.9e+02 Score=28.60 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcC---CchHHHhhH
Q 017151 10 NESEALMARIQQLEHERDELRKDIEQLCMQ--QAG---PSYLAVATR 51 (376)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEqLCMQ--QaG---pgyl~vATR 51 (376)
...|-+..+.+.|.||-.||--.+|+|=.= .|- -.|+.+|+-
T Consensus 87 ~~kETp~qK~qRll~Ev~eL~~eve~ik~dk~~a~Eek~t~~l~A~v 133 (371)
T KOG3958|consen 87 GVKETPQQKYQRLLHEVQELTTEVEKIKTDKESATEEKLTPVLLAKV 133 (371)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcchHHHHHH
Confidence 346778889999999999999999998542 111 356666653
No 209
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=32.06 E-value=5.1e+02 Score=25.58 Aligned_cols=86 Identities=21% Similarity=0.336 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh-----------HHH---HHHHHHHHhhhhhhhhcccccchhhhhcccc
Q 017151 154 RLEELSSENIELKKQNATLRFDLEKQEELNES-----------FKE---VINKFYEIRQQSLEVLETSWEDKCACLLLDS 219 (376)
Q Consensus 154 R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~-----------~~k---Vi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds 219 (376)
-+.||.+++......|..|....--.++.|-. +-. +|+..+.-+-.+..+.=-+|++|
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek-------- 78 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEK-------- 78 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH--------
Confidence 36778888888888888888776555554432 111 22222222323333333344444
Q ss_pred cccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhh
Q 017151 220 AEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRM 257 (376)
Q Consensus 220 ~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~ 257 (376)
..+=++.|+.+++.|.++|.+.|--|++
T Consensus 79 ----------~e~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 79 ----------EESKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred ----------HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999888887775
No 210
>PRK14143 heat shock protein GrpE; Provisional
Probab=32.05 E-value=2.2e+02 Score=27.45 Aligned_cols=46 Identities=30% Similarity=0.500 Sum_probs=39.0
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhh-hhhHHHHHHhHHhHHHHHHh
Q 017151 230 TSKYISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKK 275 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskL-R~glEIEnHLkk~~r~LEk~ 275 (376)
..+=+..|+++++.++..++.|++++ |.--++||.=||..|+.+.-
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~ 111 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDL 111 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999998874 89999999999988887753
No 211
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=31.92 E-value=4.2e+02 Score=24.55 Aligned_cols=78 Identities=24% Similarity=0.282 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhh
Q 017151 135 EKAKEKEELMSQKFNEFQTRLEE-LSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA 213 (376)
Q Consensus 135 EKaKE~Ee~m~qk~~e~e~R~~E-~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~ 213 (376)
...++.|+...+.+.+--.|++. ++.....-.+.+.+||.... .+...+..-+..-+..|.......--+..+||.
T Consensus 26 ~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e---~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~ 102 (247)
T PF06705_consen 26 RQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFE---EQINNMQERVENQISEKQEQLQSRLDSLNDRIE 102 (247)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566555555555555542 33344444445555555432 222222234444444455444444445566666
Q ss_pred hh
Q 017151 214 CL 215 (376)
Q Consensus 214 ~L 215 (376)
.|
T Consensus 103 ~L 104 (247)
T PF06705_consen 103 AL 104 (247)
T ss_pred HH
Confidence 66
No 212
>PRK13694 hypothetical protein; Provisional
Probab=31.84 E-value=1.7e+02 Score=24.83 Aligned_cols=35 Identities=26% Similarity=0.575 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSY 45 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgy 45 (376)
...+.+.||..||.|...+.-||--+----.|-||
T Consensus 13 ~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~~Gf 47 (83)
T PRK13694 13 QLRAFIERIERLEEEKKTISDDIKDVYAEAKGNGF 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35678899999999999999999999888889999
No 213
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=31.70 E-value=4.4e+02 Score=30.79 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=40.8
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 017151 231 SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEG 308 (376)
Q Consensus 231 skyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e~ 308 (376)
-.-|+.--+=++.+|+..+.|-++=.|-+|.|--=-. ++=+++.| .||.. +||+-|..+|.+.-.+-..+
T Consensus 455 rraIeQcnemv~rir~l~~sle~qrKVeqe~emlKae--n~rqakki---efmkE---eiQethldyR~els~lA~r~ 524 (1265)
T KOG0976|consen 455 RRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAE--NERQAKKI---EFMKE---EIQETHLDYRSELSELAHRK 524 (1265)
T ss_pred hhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHH--HHHHHHHH---HHHHH---HHHHHHHHHHHHHHHHhhcc
Confidence 3345555555677788888888888888777642211 22222222 34444 45777777777766554433
No 214
>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]
Probab=31.41 E-value=1.8e+02 Score=28.35 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=50.9
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 017151 231 SKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRS 310 (376)
Q Consensus 231 skyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~e~~s 310 (376)
-.||++||.+.++--++ .--|+.+-+- .|| -++.-+|.+= |.-|.|++...+-++.--- |-+|+.+|+.
T Consensus 31 ~~~I~eLe~~~~~~~~~-~D~e~~~~~~-~~e-t~~~~~r~if--qrR~~Kiv~~A~~~~~~~~------~~~Lt~eEk~ 99 (223)
T COG1711 31 RSFIKELEDEAGRAEEA-RDIEKYLLTD-RIE-TAKSDARSIF--QRRYGKIVSRAIYDVPGET------ISNLTPEEKE 99 (223)
T ss_pred HHHHHHHHHHhhccccc-cCHHHHHHHH-HHH-HHHHHHHHHH--HHHHHHHHHHHHHhccccc------hhcCCHHHHH
Confidence 47899999888776555 3334433333 111 1222333222 2246777777776654321 7888889998
Q ss_pred hhhhhHHHHHhhh-hc
Q 017151 311 HIKSISDVIEEKT-QH 325 (376)
Q Consensus 311 ~iks~v~~i~ekl-~~ 325 (376)
-+..+++.|.+-- .|
T Consensus 100 ly~~l~~~I~~e~~~~ 115 (223)
T COG1711 100 LYEDLVNFIEDERISF 115 (223)
T ss_pred HHHHHHHHHhhchhhc
Confidence 8899999887644 44
No 215
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.36 E-value=3.5e+02 Score=23.53 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHhhhh
Q 017151 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIK--GQLADLHAAEVIKNMEAEKQVKFFQGC 119 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK--~qLadLh~ae~~KN~e~EkqVkFfQs~ 119 (376)
.+.|..+|..|+.++.....++..|..||+.--..= .+|.+.-..--.++..++..+..+++.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456677788888888888888888888877532211 223333334455677888888888773
No 216
>PLN02678 seryl-tRNA synthetase
Probab=31.35 E-value=2.1e+02 Score=29.81 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQ 35 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEq 35 (376)
+..++..|.++|+.+.|.|-+
T Consensus 45 l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544
No 217
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.30 E-value=3.3e+02 Score=23.16 Aligned_cols=73 Identities=26% Similarity=0.360 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHH
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCM--QQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEEL 85 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCM--QQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEEL 85 (376)
+...+..|..|..+-.+++..|.+|.- +.|... +..+-.=|..+=..|+.+|..++.++.....-|.=|...|
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~-l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKAE-LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577788888888888888888876 333333 3455566888888999999999999988888887766554
No 218
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=30.94 E-value=34 Score=27.05 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 017151 233 YISALEDELEKTRSSVENLQSKLRMGL 259 (376)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR~gl 259 (376)
|=.|.+==.+.=+.|++.||.+||+|+
T Consensus 8 y~~a~~~V~~~~~~S~S~lQR~~rIGy 34 (65)
T PF09397_consen 8 YEEAVEFVIEEGKASISLLQRKFRIGY 34 (65)
T ss_dssp HHHHHHHHHHCTCECHHHHHHHHT--H
T ss_pred HHHHHHHHHHcCCccHHHHHHHhCCCH
Confidence 334444445566789999999999995
No 219
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=30.89 E-value=73 Score=24.61 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.6
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhh
Q 017151 229 STSKYISALEDELEKTRSSVENLQSK 254 (376)
Q Consensus 229 StskyisaLEee~e~lr~si~~LQsk 254 (376)
++++=|+.|+.|+..|++.+..+|+.
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 48999999999999999999998863
No 220
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.77 E-value=3.2e+02 Score=24.97 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=40.9
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVV 302 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im 302 (376)
.-.-|+.|+.+++.|...+..|..+.-.- .+..+......++...+-|..|++-..+.++++-
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~----------ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQL----------EKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567778888888887777776654322 2222333345556677788888888888877763
No 221
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=30.77 E-value=4e+02 Score=23.96 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=23.4
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 017151 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLA 96 (376)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLa 96 (376)
.|+-+||.|++..+..+...-.+|-|-+.++. +++.++-
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~eie---~L~~el~ 62 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSKAEIE---TLEEELE 62 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 35556777777777766666666666655543 3444444
No 222
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=30.60 E-value=3.3e+02 Score=27.83 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQL 36 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqL 36 (376)
....|..+|.+|+.++.+++..+.-+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~ 97 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDAL 97 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999988888887655544
No 223
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.45 E-value=3.9e+02 Score=23.70 Aligned_cols=88 Identities=24% Similarity=0.409 Sum_probs=0.0
Q ss_pred ccccC------cchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHh---hhhhHHHHHHHHHHHHHH
Q 017151 223 WSFND------TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKK---IIHSDKFISNAIAELRLC 293 (376)
Q Consensus 223 WSfn~------tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~---q~~~d~~i~ngis~L~~~ 293 (376)
|||.| -|.++-.+++-.+++.|-.+|..-. .||..|+..|..+ +.-.-+.|++.+.+++.-
T Consensus 28 ws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tK----------khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~d 97 (126)
T PF07889_consen 28 WSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTK----------KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRED 97 (126)
T ss_pred CchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHhhhhccchhhhhHHHHHhhh-hcccc
Q 017151 294 HSQLRVHVVNSLEEGRSHIKSISDVIEEKT-QHCDD 328 (376)
Q Consensus 294 h~~~R~~Im~lL~e~~s~iks~v~~i~ekl-~~~~n 328 (376)
=++-+.+| -.+..+|-.++.|| .+-.|
T Consensus 98 v~~i~~dv--------~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 98 VSQIGDDV--------DSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHhcC
No 224
>PRK14147 heat shock protein GrpE; Provisional
Probab=30.23 E-value=2.2e+02 Score=25.99 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhhh-hhhHHHHHHhHHhHHHHHHhhhh
Q 017151 234 ISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKKIIH 278 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQskL-R~glEIEnHLkk~~r~LEk~q~~ 278 (376)
...|+.+++.+++.++.|++++ |.--|+||.=+|-.++.+.-...
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~ 65 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKF 65 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777888888888887774 88899999999999998875443
No 225
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=30.07 E-value=4.9e+02 Score=24.76 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=52.1
Q ss_pred hHhHHHHH-----------HHHHHHHhhHHHHhhhhhhh--HHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHH----HHH
Q 017151 231 SKYISALE-----------DELEKTRSSVENLQSKLRMG--LEIENHLKKSVRELEKKIIHSDKFISNAIAEL----RLC 293 (376)
Q Consensus 231 skyisaLE-----------ee~e~lr~si~~LQskLR~g--lEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L----~~~ 293 (376)
.|||++++ +++++....+.|||.|-+=+ -..+--|..-+.++..++..++.|+.+|+.+. |.-
T Consensus 107 ~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrR 186 (223)
T cd07605 107 QKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRR 186 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46776666 34555556666666664421 12233455567888899999999999998654 222
Q ss_pred HHHHHHHHHHhhhhccchhhhhHHHHHhhh
Q 017151 294 HSQLRVHVVNSLEEGRSHIKSISDVIEEKT 323 (376)
Q Consensus 294 h~~~R~~Im~lL~e~~s~iks~v~~i~ekl 323 (376)
|-..=+--..++..+.......+..++.+|
T Consensus 187 yc~lv~~~c~v~~~e~~~~~~~~~~L~~~l 216 (223)
T cd07605 187 YCFLVDKHCSVAKHEIAYHAKAMTLLSTRL 216 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222233444444444444444554444
No 226
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=29.97 E-value=3.8e+02 Score=23.48 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 017151 141 EELMSQKFNEFQTRLEELSSENIELKKQNATLRF 174 (376)
Q Consensus 141 Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~ 174 (376)
-.+++.+++..++|+.|..+.+.-.++.|..+..
T Consensus 45 r~SLs~kL~ktnerLaevstkLl~Ekeq~rs~ls 78 (111)
T PF12001_consen 45 RKSLSNKLNKTNERLAEVSTKLLVEKEQNRSLLS 78 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhcccccc
Confidence 3678999999999999999888888877755543
No 227
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=29.95 E-value=50 Score=26.17 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=23.4
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 017151 232 KYISALEDELEKTRSSVENLQSKLRMGL 259 (376)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskLR~gl 259 (376)
-|-.+++==++.=+.|++-||-+||+|+
T Consensus 6 ly~~a~~~V~~~~~~S~S~lQR~~~IGy 33 (63)
T smart00843 6 LYDEAVELVIETQKASTSLLQRRLRIGY 33 (63)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHhcch
Confidence 4666777677778899999999999995
No 228
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=29.56 E-value=7.4e+02 Score=26.70 Aligned_cols=33 Identities=24% Similarity=0.100 Sum_probs=20.8
Q ss_pred HHhhHHHH--HhhhhhHHHHHHHHHHHHHhhhhhc
Q 017151 47 AVATRMHF--QRTAGLEQEIEILKQKIAACARENS 79 (376)
Q Consensus 47 ~vATRM~~--QRtA~LEQeIE~Lkkkl~~c~rEn~ 79 (376)
+++.-+|+ |+...++|++-.++++..+.+-|..
T Consensus 336 ~~g~~~~~~~q~~~~~~~~l~~~~~~~~~~~~e~~ 370 (656)
T PRK06975 336 AAAVGGYALNRKVDRLDQELVQRQQANDAQTAELR 370 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666 7778888887777776554444443
No 229
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=29.54 E-value=8e+02 Score=27.04 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhccccccccccc
Q 017151 147 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFN 226 (376)
Q Consensus 147 k~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn 226 (376)
.++..+..+..+++-..-.++-++.||..+..++.-.......+.+++.-=+....+..+. +.+-. +.+
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~L~---~~~ 289 (670)
T KOG0239|consen 221 NYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL--------QSDLE---SLE 289 (670)
T ss_pred hhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH---HHH
Confidence 3445555566666666666655666666666665555444444444333222222221111 00000 000
Q ss_pred CcchhHhHHHHHHHHHHHHhhHHHHhhhhhhh
Q 017151 227 DTSTSKYISALEDELEKTRSSVENLQSKLRMG 258 (376)
Q Consensus 227 ~tStskyisaLEee~e~lr~si~~LQskLR~g 258 (376)
+-=.-+| +=+++.-+|.|.|-.|.-|+||=
T Consensus 290 ~~l~~~~--~e~~~r~kL~N~i~eLkGnIRV~ 319 (670)
T KOG0239|consen 290 ENLVEKK--KEKEERRKLHNEILELKGNIRVF 319 (670)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHhhcCceEE
Confidence 0001122 33455667888888888888874
No 230
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=29.52 E-value=7.1e+02 Score=26.47 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=71.8
Q ss_pred hcccccchhhhhcccccccccccC-cchhHhHHHHHHHHHHHHhhHHHHhhh----hhhhHHHHHHhHHhHHHHHHhhhh
Q 017151 204 LETSWEDKCACLLLDSAEMWSFND-TSTSKYISALEDELEKTRSSVENLQSK----LRMGLEIENHLKKSVRELEKKIIH 278 (376)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~-tStskyisaLEee~e~lr~si~~LQsk----LR~glEIEnHLkk~~r~LEk~q~~ 278 (376)
.-++.++||..|=.+|..---|-| |-.-.=.+++|.=.+-..+-++.-|+- .-.+-.+++-|-.-++.|......
T Consensus 192 eA~~ID~~c~~L~~~S~~I~~~p~~~R~~~~~~s~e~W~~fs~~nl~~ae~er~~S~~LR~~l~~~l~~tan~lr~Q~~~ 271 (421)
T KOG2685|consen 192 EAYEIDEKCLALNNNSPNISYKPDPTRVPPNSSSPESWAKFSGDNLDRAERERAASAALREALDQTLRETANDLRTQADA 271 (421)
T ss_pred hhheechhhhhhcCCCCCeeccCCCccCCCCCCCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999888764422222 110011112444444444444444331 223445677888889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 017151 279 SDKFISNAIAELRLCHSQLRVHVVNSLEEGRS 310 (376)
Q Consensus 279 ~d~~i~ngis~L~~~h~~~R~~Im~lL~e~~s 310 (376)
.+..+.++|.+.+......-.|.-+.|+|-..
T Consensus 272 ve~af~~ri~etqdar~kL~~ql~k~leEi~~ 303 (421)
T KOG2685|consen 272 VELAFKKRIRETQDARNKLEWQLAKTLEEIAD 303 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888887443
No 231
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=29.36 E-value=93 Score=29.53 Aligned_cols=42 Identities=29% Similarity=0.487 Sum_probs=34.4
Q ss_pred HHHhhhhhHHHHHHHHHHHH---------HhhhhhcchHHHHHHHHHHHHHHH
Q 017151 53 HFQRTAGLEQEIEILKQKIA---------ACARENSNLQEELSEAYRIKGQLA 96 (376)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~---------~c~rEn~nLQEELsEAYRiK~qLa 96 (376)
-|..+..|++|.+++|++|+ |.+=.+.|+-|+ |||+.=+.+|
T Consensus 123 rf~~~~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~--EAy~~lR~~A 173 (194)
T COG3707 123 RFEERRALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEE--EAYKLLRRTA 173 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 57788899999999999997 456677888875 8999877666
No 232
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=28.95 E-value=1.5e+02 Score=29.56 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 83 EELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE-KAKEKEELMSQKFNEFQTRLEELSSE 161 (376)
Q Consensus 83 EELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaE-KaKE~Ee~m~qk~~e~e~R~~E~~s~ 161 (376)
+||..-|+|=..-++=.+... +...||+. +-.+|.+. -.++=|+ --++..+.+.+++..++.++.++...
T Consensus 194 e~l~~F~~l~~~T~~R~~f~~-------r~~~Yf~~-l~~~f~d~-a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 194 EELDDFYDLYKETAERKGFSI-------RSLEYFEN-LYDAFGDK-AKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHTT------------HHHHHH-HHHHCCCC-EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCcc-------cCHHHHHH-HHHhcCCC-eEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777765533222 23345554 33444322 1121111 01233344556666677777666665
Q ss_pred HHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHh
Q 017151 162 NIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKY 233 (376)
Q Consensus 162 ~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStsky 233 (376)
+.+-. ..+..+..+++|.++..+=|..+=++....... .---+++++....+.|.+-|.|...|
T Consensus 265 l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~----~~la~~l~~~~g~~~~yly~gs~~~~ 328 (406)
T PF02388_consen 265 LEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAEYGDE----IPLAGALFIYYGDEAYYLYGGSDEEY 328 (406)
T ss_dssp HHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SE----EEEEEEEEEEETTEEEEEEEEE-CGC
T ss_pred HHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----ceEEEEEEEEECCEEEEEECccchhh
Confidence 54333 444455556666666666666554443222211 11224556666777788877665544
No 233
>smart00353 HLH helix loop helix domain.
Probab=28.74 E-value=76 Score=22.11 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=27.5
Q ss_pred HHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHH
Q 017151 191 NKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELE 242 (376)
Q Consensus 191 ~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e 242 (376)
..|..+|.--+.+..-.-.+|+++|-. +..||..|.++++
T Consensus 13 ~~~~~L~~lip~~~~~~k~~k~~iL~~------------ai~yi~~L~~~~~ 52 (53)
T smart00353 13 EAFDELRSLLPTLPNNKKLSKAEILRL------------AIEYIKSLQEELQ 52 (53)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHH------------HHHHHHHHHHHHh
Confidence 357777765555444555678887754 6789999988765
No 234
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.57 E-value=4.3e+02 Score=23.66 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=17.4
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhHHHH
Q 017151 97 DLHAAEVIKNMEAEKQVKFFQGCMAAA 123 (376)
Q Consensus 97 dLh~ae~~KN~e~EkqVkFfQs~vA~A 123 (376)
||-+..+.+-.+++.++.-|+..++.+
T Consensus 84 dLAr~al~~k~~~e~~~~~l~~~~~~~ 110 (221)
T PF04012_consen 84 DLAREALQRKADLEEQAERLEQQLDQA 110 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666677777777777655543
No 235
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=28.41 E-value=5.8e+02 Score=25.82 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQQAGP 43 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGp 43 (376)
+..+-.++.-++++.=.++..-=.++.||
T Consensus 52 i~~~A~~~~~~~~eYv~~l~kaL~~~~~~ 80 (342)
T PF06632_consen 52 IRQRAKDWDMEVEEYVQELKKALTGQQQP 80 (342)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHHTSSSSS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Confidence 33455555556666666655555555555
No 236
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=28.05 E-value=5.3 Score=27.18 Aligned_cols=16 Identities=50% Similarity=0.688 Sum_probs=13.1
Q ss_pred cCCchHHHhhHHHHHh
Q 017151 41 AGPSYLAVATRMHFQR 56 (376)
Q Consensus 41 aGpgyl~vATRM~~QR 56 (376)
+||+|++|||.-.+-|
T Consensus 9 ~g~~~vavaTS~~~lR 24 (27)
T PF12341_consen 9 AGDSWVAVATSAGYLR 24 (27)
T ss_pred ccCCEEEEEeCCCeEE
Confidence 7999999999765544
No 237
>smart00340 HALZ homeobox associated leucin zipper.
Probab=27.96 E-value=88 Score=23.89 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHH
Q 017151 61 EQEIEILKQKIAACARENSNLQEELSEAYRIKG 93 (376)
Q Consensus 61 EQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~ 93 (376)
|-|-|-||+=-...+.||..||.||.|-.++|.
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 446677888888889999999999999888774
No 238
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.63 E-value=6.5e+02 Score=27.10 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
+...+..++.+|+.++.+|+.....| .+.-||.+-.| .+|...+..|+++++.....-.++.+--.+..+
T Consensus 305 ea~~~l~~~~~l~~ql~~l~~~~~~l-~~~~~~~hP~v---------~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~ 374 (726)
T PRK09841 305 EAKAVLEQIVNVDNQLNELTFREAEI-SQLYKKDHPTY---------RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLR 374 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCchH---------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q ss_pred HHHHHH---HHHHHHHHhhHHHH
Q 017151 91 IKGQLA---DLHAAEVIKNMEAE 110 (376)
Q Consensus 91 iK~qLa---dLh~ae~~KN~e~E 110 (376)
+.++.. ++|..=+.+-.|++
T Consensus 375 L~R~~~~~~~lY~~lL~r~~e~~ 397 (726)
T PRK09841 375 LSRDVEAGRAVYLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 239
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.54 E-value=2.8e+02 Score=23.31 Aligned_cols=50 Identities=30% Similarity=0.316 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHH
Q 017151 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKE 188 (376)
Q Consensus 132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~k 188 (376)
||.|..||+--...+...+.+.-.+.++... ..|+.+...-.+...++++
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~en-------eqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALEREN-------EQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 8999999888888887776665555555444 4444444444455554443
No 240
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.45 E-value=6.1e+02 Score=26.70 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 017151 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEV 103 (376)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~ 103 (376)
+-++++-|+-.++.|+...+.-.-|++.|-.||+||.|.+..|++-|+|-+
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf 189 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATF 189 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344444444445555554444555789999999999999999999876554
No 241
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.36 E-value=5e+02 Score=24.03 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=15.2
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhh
Q 017151 230 TSKYISALEDELEKTRSSVENLQS 253 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQs 253 (376)
..+|+++++.++++|...++.++.
T Consensus 75 l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 75 LERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667776666666666553
No 242
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.83 E-value=6.8e+02 Score=25.37 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhhcchHHHHH
Q 017151 64 IEILKQKIAACARENSNLQEELS 86 (376)
Q Consensus 64 IE~Lkkkl~~c~rEn~nLQEELs 86 (376)
++.|++|+...-.||.-|..|-+
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~ 184 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEAS 184 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998887543
No 243
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=86 Score=25.91 Aligned_cols=28 Identities=39% Similarity=0.703 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAG 42 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaG 42 (376)
-.++||...-.--|+|.|.|--| |+|||
T Consensus 38 QII~RiDDM~~riDDLEKnIaDL-m~qag 65 (73)
T KOG4117|consen 38 QIIGRIDDMSSRIDDLEKNIADL-MTQAG 65 (73)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHH-HHHcc
Confidence 45677777777889999999887 88998
No 244
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=26.65 E-value=53 Score=26.51 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=24.2
Q ss_pred HHHHHHhhhhhhh-hcccccchhhhhccccccccccc
Q 017151 191 NKFYEIRQQSLEV-LETSWEDKCACLLLDSAEMWSFN 226 (376)
Q Consensus 191 ~KFyeiR~~~~e~-~~~s~~~Kc~~Ll~ds~~~WSfn 226 (376)
.+||..=...+.. ..+++++=.-+|..-+.++|||+
T Consensus 46 ~~ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~edWSFg 82 (82)
T PF14552_consen 46 KALYRALAERLAEKLGIRPEDVMIVLVENPREDWSFG 82 (82)
T ss_dssp HHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEEC
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEEEEECCcccCCCC
Confidence 4566555555544 88899999999999999999995
No 245
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=26.64 E-value=34 Score=30.64 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=19.7
Q ss_pred HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151 47 AVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (376)
Q Consensus 47 ~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (376)
+-+-++.+...+.|+.+-+.|+.++.....||..|..+++.+=
T Consensus 7 aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq 49 (181)
T PF09311_consen 7 AQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQ 49 (181)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999999999999999999999999998653
No 246
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=26.59 E-value=7.4e+02 Score=25.71 Aligned_cols=223 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH------HHHHHHhhH--------
Q 017151 42 GPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL------HAAEVIKNM-------- 107 (376)
Q Consensus 42 Gpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL------h~ae~~KN~-------- 107 (376)
|.|-+-.+---+..||-.++.+...|..++.|+. ++.++|.+.-.+..++.=+ -.+|+..=+
T Consensus 174 ~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~----~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq 249 (511)
T PF09787_consen 174 EDGNAITAVVEFLKRTLKKEIERQELEERPKALR----HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQ 249 (511)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHhhh-hHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhH
Q 017151 108 EAEKQVKFFQG-CMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186 (376)
Q Consensus 108 e~EkqVkFfQs-~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~ 186 (376)
.-||-+.+-.+ |.-..|..+-.+ ||.+..+..-+.+-..+..++..+..+..++.+.+ ..+....+++
T Consensus 250 ~kEklI~~LK~~~~~~~~~~~~~~-~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e----------~~~~~~~~~~ 318 (511)
T PF09787_consen 250 SKEKLIESLKEGCLEEGFDSSTNS-IELEELKQERDHLQEEIQLLERQIEQLRAELQDLE----------AQLEGEQESF 318 (511)
T ss_pred CHHHHHHHHHhcccccccccccch-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhH
Q 017151 187 KEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLK 266 (376)
Q Consensus 187 ~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLk 266 (376)
.+-..+.=........- +....-...||-.--.++-.+.-+..++--.. |.|+..+++.+...- +..---|+|+=|.
T Consensus 319 ~~~~~~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~k-e~E~q~lr~~l~~~~-~~s~~~elE~rl~ 395 (511)
T PF09787_consen 319 REQPQELSQQLEPELTT-EAELRLYYQELYHYREELSRQKSPLQLKLKEK-ESEIQKLRNQLSARA-SSSSWNELESRLT 395 (511)
T ss_pred HHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHHHHHHh-ccCCcHhHHHHHh
Q ss_pred HhHHHHHHhhhhhHHH
Q 017151 267 KSVRELEKKIIHSDKF 282 (376)
Q Consensus 267 k~~r~LEk~q~~~d~~ 282 (376)
-.-..|=.||-.+..+
T Consensus 396 ~lt~~Li~KQ~~lE~l 411 (511)
T PF09787_consen 396 QLTESLIQKQTQLESL 411 (511)
T ss_pred hccHHHHHHHHHHHHH
No 247
>PF08077 Cm_res_leader: Chloramphenicol resistance gene leader peptide; InterPro: IPR012537 This family consists of chloramphenicol (Cm) resistance gene leader peptides. Inducible resistance to Cm in both Gram-positive and Gram-negative bacteria is controlled by translation attenuation. In translation attenuation, the ribosome-binding-site (RBS) for the resistance determinant is sequestered in a secondary structure domain within the mRNA. Preceding the secondary structure is a short, translated ORF termed the leader. Ribosome stalling in the leader causes the destabilisation of the downstream secondary structure, allowing initiation of translation of the Cm resistance gene [].
Probab=26.33 E-value=9.9 Score=23.81 Aligned_cols=11 Identities=64% Similarity=0.927 Sum_probs=9.4
Q ss_pred cC-CchHHHhhH
Q 017151 41 AG-PSYLAVATR 51 (376)
Q Consensus 41 aG-pgyl~vATR 51 (376)
+| ||-++|.||
T Consensus 2 sgvpgalavvtr 13 (17)
T PF08077_consen 2 SGVPGALAVVTR 13 (17)
T ss_pred CCCCceEEEEEE
Confidence 56 999999987
No 248
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.15 E-value=1.9e+02 Score=24.55 Aligned_cols=40 Identities=25% Similarity=0.514 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHH
Q 017151 150 EFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 189 (376)
Q Consensus 150 e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kV 189 (376)
.++.|+.+++..+....+-|..|+..+..-.+.-..++++
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3788999999999999988888888887665555544444
No 249
>PRK14146 heat shock protein GrpE; Provisional
Probab=26.08 E-value=2.9e+02 Score=26.20 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhHHHHhhhh-hhhHHHHHHhHHhHHHHHHhhhh
Q 017151 234 ISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKKIIH 278 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQskL-R~glEIEnHLkk~~r~LEk~q~~ 278 (376)
+..|+.+++.++..++.|++++ |.--|+||.=+|-.++.+.-..+
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~ 101 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKE 101 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888887764 89999999999999988875443
No 250
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=26.02 E-value=3.4e+02 Score=21.59 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 59 GLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 59 ~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
.||+++..|+.+|...+|.|...+.++..--+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ 33 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRR 33 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999998888888877766544333
No 251
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.97 E-value=2.4e+02 Score=20.88 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHH
Q 017151 149 NEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (376)
Q Consensus 149 ~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~ 179 (376)
......+.++++.+...+.-|+.|+.++..+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666677777777777777777666
No 252
>PRK14145 heat shock protein GrpE; Provisional
Probab=25.59 E-value=3.9e+02 Score=25.19 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=43.4
Q ss_pred cCcchhHhHHHHHHHHHHHHhhHHHHhhh-hhhhHHHHHHhHHhHHHHHHhhh
Q 017151 226 NDTSTSKYISALEDELEKTRSSVENLQSK-LRMGLEIENHLKKSVRELEKKII 277 (376)
Q Consensus 226 n~tStskyisaLEee~e~lr~si~~LQsk-LR~glEIEnHLkk~~r~LEk~q~ 277 (376)
+..+++.-+..|+++++.++..++.|.++ ||.--|+||.=+|-.++.+.-..
T Consensus 39 ~~~~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~ 91 (196)
T PRK14145 39 PQQQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVE 91 (196)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888999999999999999988876 68889999999999888776443
No 253
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=25.53 E-value=64 Score=31.14 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=18.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHhh
Q 017151 54 FQRTAGLEQEIEILKQKIAACA 75 (376)
Q Consensus 54 ~QRtA~LEQeIE~Lkkkl~~c~ 75 (376)
.||+++||.|+..|+.|+++..
T Consensus 121 lqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999998888888887754
No 254
>PLN02320 seryl-tRNA synthetase
Probab=25.48 E-value=2.4e+02 Score=29.95 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQ 35 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEq 35 (376)
.+..++.+|.+||+.+.|.|-+
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566788888888888888865
No 255
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=25.44 E-value=67 Score=26.22 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=15.9
Q ss_pred hcccccchhhhhcccccccccccCcc
Q 017151 204 LETSWEDKCACLLLDSAEMWSFNDTS 229 (376)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tS 229 (376)
..+..++==-.+-+-+.++|+|||+.
T Consensus 89 lgi~~~rv~I~f~~~~~~~w~~~G~~ 114 (116)
T PTZ00397 89 LKVKSERVYIEFKDCSAQNWAFNGST 114 (116)
T ss_pred hCcCcccEEEEEEECChhheeEccee
Confidence 44444443334445577889999964
No 256
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=25.33 E-value=2.8e+02 Score=28.29 Aligned_cols=94 Identities=19% Similarity=0.296 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhc
Q 017151 142 ELMSQKFNEFQTRLEELSSENIELKKQNA-----TLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLL 216 (376)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qk~~n~-----~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll 216 (376)
..|.+++..+.+|+.+++..+.+..-.++ .+-.++..++ ++++.|=+++....+...+- -|+
T Consensus 3 ~~~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~-------~~v~~~~~~~~~~~~~~~~~------el~ 69 (360)
T TIGR00019 3 PSLLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLE-------EIVDCYREYQQAQEDIKEAK------EIL 69 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH------HHH
Confidence 35778888888888888877754321111 1112333333 44444333332211111000 011
Q ss_pred ccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhh
Q 017151 217 LDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG 258 (376)
Q Consensus 217 ~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~g 258 (376)
.+ + -...++-+++++..+.+.++++...|.+.
T Consensus 70 ~~-------~---D~e~~~~a~~e~~~l~~~~~~~e~~l~~~ 101 (360)
T TIGR00019 70 EE-------S---DPEMREMAKEELEELEEKIEELEEQLKVL 101 (360)
T ss_pred hc-------c---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 12357888899999999999998776553
No 257
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=24.85 E-value=3.8e+02 Score=26.72 Aligned_cols=34 Identities=26% Similarity=0.628 Sum_probs=26.3
Q ss_pred HHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHH
Q 017151 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELE 273 (376)
Q Consensus 240 e~e~lr~si~~LQskLR~glEIEnHLkk~~r~LE 273 (376)
.+|+.|+.|..|+++++|...-=.=.-+++..|-
T Consensus 130 kidkTra~v~~L~tri~Vaiq~v~siS~~I~kLR 163 (312)
T PF04782_consen 130 KIDKTRASVKDLHTRIRVAIQSVDSISKRIEKLR 163 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999875555555555543
No 258
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.84 E-value=2.4e+02 Score=30.05 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=34.6
Q ss_pred hhhhHHHHHhhhhh--hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHH
Q 017151 116 FQGCMAAAFAERDN--SVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (376)
Q Consensus 116 fQs~vA~AFAERD~--slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi 190 (376)
|=+-|-+.|.++++ +|-| +-.+..++|++++.++..+...+..+..++..+.+++..+..+..=+
T Consensus 54 ~~~vV~~~FddkVnqSALte----------qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 54 MTGVVDTTFDDKVRQHATTE----------MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ccceecchhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44566667776632 2332 22344555555555555555444555566666666666665554433
No 259
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.63 E-value=1.5e+02 Score=26.22 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKI 71 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl 71 (376)
...++..+|.+|+++|+++...+=||- -| +=.|+ +-++...|+.|++++++.+
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qD---eF-AkwaK-l~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQD---EF-AKWAK-LNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTT---SH-HHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHH---HH-HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888777775554 33 22233 2334445555555555533
No 260
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.37 E-value=1.3e+03 Score=27.89 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=30.9
Q ss_pred HHHHhhhhhhhHHHHHhHHHHHHH----------------HHHHHHHHHHHHHHHHHHH-HHHhhhHHHhhhHHHHHHhh
Q 017151 121 AAAFAERDNSVMEAEKAKEKEELM----------------SQKFNEFQTRLEELSSENI-ELKKQNATLRFDLEKQEELN 183 (376)
Q Consensus 121 A~AFAERD~slmEaEKaKE~Ee~m----------------~qk~~e~e~R~~E~~s~~~-~qk~~n~~Lq~dl~~~~eq~ 183 (376)
|.|+|- .-|.+-+|+.||++-.+ .|---++-=|++|.+...- .+++.+++. .+-++++.|.
T Consensus 1157 ~~alaa-e~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~e-qe~~~~~k~~ 1234 (1320)
T PLN03188 1157 INALAA-EISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAE-QEAAEAYKQI 1234 (1320)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 444442 34556777777765322 1223355667777765443 344444333 3344444444
Q ss_pred Hh
Q 017151 184 ES 185 (376)
Q Consensus 184 e~ 185 (376)
+.
T Consensus 1235 ~k 1236 (1320)
T PLN03188 1235 DK 1236 (1320)
T ss_pred HH
Confidence 43
No 261
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.36 E-value=9.1e+02 Score=26.31 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhh--hhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTA--GLEQEIEILKQKIAACARENSNLQEELSEAYRIK 92 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA--~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK 92 (376)
-.++|.++.+.--+|.+-|=++-.+|.+ .|-- .|--+=|.|.+||- +|+.+|...--+|
T Consensus 374 ~~~KI~~~k~r~~~Ls~RiLRv~ikqei------------lr~~G~~L~~~EE~Lr~Kld-------tll~~ln~Pnq~k 434 (508)
T KOG3091|consen 374 AVAKIEEAKNRHVELSHRILRVMIKQEI------------LRKRGYALTPDEEELRAKLD-------TLLAQLNAPNQLK 434 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhccCCcCCccHHHHHHHHH-------HHHHHhcChHHHH
Confidence 3445555555555555555554444433 2221 45555677888874 4555666667889
Q ss_pred HHHHHHHHHHHHhh
Q 017151 93 GQLADLHAAEVIKN 106 (376)
Q Consensus 93 ~qLadLh~ae~~KN 106 (376)
..|+.|+-....+|
T Consensus 435 ~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 435 ARLDELYEILRMQN 448 (508)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999977776666
No 262
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=24.31 E-value=3.4e+02 Score=24.98 Aligned_cols=43 Identities=30% Similarity=0.286 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHhhhHHHhhhHHHHHHhhHhH
Q 017151 144 MSQKFNEFQTRLEE-------LSSENIELKKQNATLRFDLEKQEELNESF 186 (376)
Q Consensus 144 m~qk~~e~e~R~~E-------~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~ 186 (376)
++.++.+=+.|-++ |-.+++..+..|++|+.|+.++..+-+.+
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667666 55666667788888888888877776654
No 263
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=24.28 E-value=1.5e+02 Score=32.50 Aligned_cols=65 Identities=25% Similarity=0.262 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHh
Q 017151 57 TAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFA 125 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFA 125 (376)
+++||.||+.|++.=.-++||..-+--+| -.+|-||..||.-.+.. -.-+.=..++++-.|.-.|
T Consensus 513 I~nLE~ev~~l~~eKeqLl~Er~~~d~~L---~~~kqqls~L~~~Vf~~-lrd~eg~~~sp~~yalq~a 577 (604)
T KOG3863|consen 513 ILNLEDEVEKLQKEKEQLLRERDELDSTL---GVMKQQLSELYQEVFQQ-LRDEEGNPYSPSQYALQQA 577 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HhccccCccCHHHHHHHhh
Confidence 68999999999999999999988775555 56899999998865532 2233334455555554443
No 264
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.20 E-value=3.3e+02 Score=21.42 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHh
Q 017151 148 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIR 197 (376)
Q Consensus 148 ~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR 197 (376)
+.++|.++.-+++.+.-.+..|..+...+.++++--. +|+ .-||+=
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk---~ll-~lYE~V 47 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK---DLL-SLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHH
Confidence 5678888888888888888888888888877766543 333 356653
No 265
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.02 E-value=1.3e+03 Score=27.84 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHH----hhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh-hcccccchhhhhcccccccccccC
Q 017151 153 TRLEELSSENIELK----KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV-LETSWEDKCACLLLDSAEMWSFND 227 (376)
Q Consensus 153 ~R~~E~~s~~~~qk----~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~-~~~s~~~Kc~~Ll~ds~~~WSfn~ 227 (376)
.++++++..++..| +|++|||+-...+---.|-.-..=.|+.++=-+--.- ..|+--.|.+.=- -..|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaaka-------g~kg 1151 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARA-------GVRG 1151 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cccc
Confidence 34445555444443 5888888876544433333333334444432111111 2222222222110 1113
Q ss_pred cchhHhHHHHHHHHHHHHhh-----------HHHHhhhhhhh
Q 017151 228 TSTSKYISALEDELEKTRSS-----------VENLQSKLRMG 258 (376)
Q Consensus 228 tStskyisaLEee~e~lr~s-----------i~~LQskLR~g 258 (376)
+ -|+||.||--|+-.||.. =..||.-||=-
T Consensus 1152 ~-~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdt 1192 (1320)
T PLN03188 1152 A-ESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDT 1192 (1320)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 2 489999998888888766 44577777743
No 266
>PRK14153 heat shock protein GrpE; Provisional
Probab=24.00 E-value=2.8e+02 Score=26.10 Aligned_cols=50 Identities=26% Similarity=0.204 Sum_probs=27.7
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 130 SVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 130 slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
|--|||..||..+ ...+...+.+++..+.+.+..-..++.|...++..++
T Consensus 22 ~~~~~~~~~~~~~-----~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 22 SAEEAEELKEEPE-----DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred CHHHHHHHhhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888877655 2333334444444444444444556666666666655
No 267
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=23.96 E-value=5.7e+02 Score=23.51 Aligned_cols=64 Identities=28% Similarity=0.384 Sum_probs=38.3
Q ss_pred HHHHHHhh-HHHHHHHHHh--hhhHHHHHh-hhhhhhHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 99 HAAEVIKN-MEAEKQVKFF--QGCMAAAFA-ERDNSVME-AEKAKEKEELMSQKFNEFQTRLEELSSENIELK 166 (376)
Q Consensus 99 h~ae~~KN-~e~EkqVkFf--Qs~vA~AFA-ERD~slmE-aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk 166 (376)
|+.+|.+. ..+++++++. =-.+|..|| ..|.-.++ ++|.|+.+ .++.+.+.++.++.+.|-...
T Consensus 71 WK~eFe~Y~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq----~kv~~ME~~v~elas~m~~~~ 139 (152)
T PF11500_consen 71 WKEEFESYHEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQ----EKVAEMERHVTELASQMASKR 139 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 66666553 2345555444 346899999 77754444 33444333 677777777777777765543
No 268
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=23.94 E-value=4e+02 Score=23.20 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 13 EALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
+.....+..|=+--=.-.|+||-|.- +=||. .+...-.-+|.+.|+.|.+..-+++....++...|-+.+-++++
T Consensus 65 ~~~~~~~~elA~dIi~kakqIe~LId--sLPg~-~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~ 139 (144)
T PF11221_consen 65 EEFEENIKELATDIIRKAKQIEYLID--SLPGI-EVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIR 139 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HSTTS-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--hCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444556666663 33663 23444556888899988888888777777777776666666554
No 269
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=23.84 E-value=89 Score=25.46 Aligned_cols=27 Identities=44% Similarity=0.423 Sum_probs=20.6
Q ss_pred hHHHhhHHHHHhhhhhHHHHHHHHHHHHH
Q 017151 45 YLAVATRMHFQRTAGLEQEIEILKQKIAA 73 (376)
Q Consensus 45 yl~vATRM~~QRtA~LEQeIE~Lkkkl~~ 73 (376)
.++|+ =+.+|+|.|.-||+.|+.++..
T Consensus 24 llsV~--El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 24 LLSVA--ELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HhhHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 34554 3789999999999999886643
No 270
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.82 E-value=3.7e+02 Score=21.24 Aligned_cols=40 Identities=33% Similarity=0.335 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 017151 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 173 (376)
Q Consensus 134 aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq 173 (376)
--|+|.---....++.+.+.|..+|+..+...+.--..+|
T Consensus 20 L~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 20 LTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555556667777777777666666554443333
No 271
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.78 E-value=7.7e+02 Score=26.49 Aligned_cols=76 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccc
Q 017151 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMW 223 (376)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~W 223 (376)
+..++.+.+.|+.++.++.+.++.-|..|+........+.+.-..-...=+.-.
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~-------------------------- 117 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKE-------------------------- 117 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHH--------------------------
Q ss_pred cccCcchhHhHHHHHHHHHHHHhhHHHHhhhh
Q 017151 224 SFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 224 Sfn~tStskyisaLEee~e~lr~si~~LQskL 255 (376)
+..|.++...++..++.||.+|
T Consensus 118 ----------~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 118 ----------IEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHH
No 272
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=23.75 E-value=1.1e+02 Score=23.46 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhh
Q 017151 234 ISALEDELEKTRSSVENLQSKLRM 257 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQskLR~ 257 (376)
|++|..+++.|...+..||+.+..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888877653
No 273
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.68 E-value=3.4e+02 Score=23.23 Aligned_cols=41 Identities=34% Similarity=0.432 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
|.+++..+..-+.++...+.+.-+-|.+|+++-..+.+...
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555566666666667777777766666544
No 274
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=23.25 E-value=3.5e+02 Score=24.03 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=55.1
Q ss_pred hcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 017151 204 LETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 283 (376)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i 283 (376)
.++|.++|..+- +-+.+|. +-.+.-.+|++|.+...+|-.++.+|... +++++..| ..=.-.|+
T Consensus 19 ~~Lt~eeK~~lk--ev~~~~~-~~~~~de~i~~LK~ksP~L~~k~~~l~~~----------~k~ki~~L---~peak~Fv 82 (154)
T PF05823_consen 19 KNLTPEEKAELK--EVAKNYA-KFKNEDEMIAALKEKSPSLYEKAEKLRDK----------LKKKIDKL---SPEAKAFV 82 (154)
T ss_dssp HH--TTTHHHHH--HHHTT--------TTHHHHHHHH-HHHHHHHHHHHHH----------HHHTTTT-----HHHHHHH
T ss_pred HcCCHHHHHHHH--HHHHHcc-ccCCHHHHHHHHHHhCHHHHHHHHHHHHH----------HHHHHHcC---CHHHHHHH
Confidence 678889987654 4444453 23467789999999999999999888654 45555555 22233455
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHhhhhccchhhhhHHHHHhhh
Q 017151 284 SNAIAELRLCHSQL-------RVHVVNSLEEGRSHIKSISDVIEEKT 323 (376)
Q Consensus 284 ~ngis~L~~~h~~~-------R~~Im~lL~e~~s~iks~v~~i~ekl 323 (376)
.+=|...++.|.+. ..++-++..+--...++....+++.|
T Consensus 83 ~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL 129 (154)
T PF05823_consen 83 KELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDL 129 (154)
T ss_dssp HHHHHHHHHHHHHHHHT----THHHHHHH----HHHHTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHH
Confidence 55555555555542 23343444444445556666667777
No 275
>PF07763 FEZ: FEZ-like protein; InterPro: IPR011680 This is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation []. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic []. The Caenorhabditis elegans homolog, UNC-76 (Q7JNU9 from SWISSPROT), may play structural and signalling roles in the control of axonal extension and adhesion (particularly in the presence of adjacent neuronal cells []) and these roles have also been postulated for other FEZ family proteins []. Certain homologs have been definitively found to interact with the N-terminal variable region (V1) of PKC-zeta, and this interaction causes cytoplasmic translocation of the FEZ family protein in mammalian neuronal cells []. The C-terminal region probably participates in the association with the regulatory domain of PKC-zeta []. The members of this family are predicted to form coiled-coil structures [, ], which may interact with members of the RhoA family of signalling proteins [], but are not thought to contain other characteristic protein motifs []. Certain members of this family are expressed almost exclusively in the brain, whereas others (such as FEZ2, Q76LN0 from SWISSPROT) are expressed in other tissues, and are thought to perform similar but unknown functions in these tissues [].
Probab=23.24 E-value=5.6e+02 Score=25.31 Aligned_cols=110 Identities=25% Similarity=0.240 Sum_probs=70.8
Q ss_pred HhhcC-CchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 017151 38 MQQAG-PSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFF 116 (376)
Q Consensus 38 MQQaG-pgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFf 116 (376)
||.+. |+- .-|-..+++-..+-+++..++.- -|.++.+|=-..-- =++|.++ ..++|..|+=|
T Consensus 127 Mq~s~d~~~--~~~~~~~~~~s~~~~~~~~~~~~------~~~~~~~e~L~~LS-~seL~~l-------l~e~E~~Ir~y 190 (244)
T PF07763_consen 127 MQESPDPEE--EETDSSSDSLSSLSQEMQSLKPS------SNNSSYEEGLRQLS-LSELNEL-------LEEMETAIREY 190 (244)
T ss_pred HhcCCCCCC--CCCCccchhhhHHHHHHHHhhhc------ccccCcHHHHHhcC-HHHHHHH-------HHHHHHHHHHH
Confidence 88876 554 33444555555555666555431 22333332111111 1344454 67899999999
Q ss_pred hhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 117 QGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKK 167 (376)
Q Consensus 117 Qs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~ 167 (376)
=-..-+.+|-||-=..| ||..-..+.-+...|.|-+++...+++-+.
T Consensus 191 SEeLV~qLA~RDELefE----KEvKN~FIS~Ll~VQnrqre~r~~~kkk~k 237 (244)
T PF07763_consen 191 SEELVQQLALRDELEFE----KEVKNTFISLLLEVQNRQREQRELAKKKRK 237 (244)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999965444 888888899999999999887665555443
No 276
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.24 E-value=4.7e+02 Score=22.28 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017151 234 ISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVH 300 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~ 300 (376)
++.|...++.|+..++.++.++-..-+=++.|++.++.++..-...-+=+.---..++-.-+++..+
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e 134 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHE 134 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555666666666666554433333333333333333344333
No 277
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.21 E-value=1.4e+02 Score=24.70 Aligned_cols=34 Identities=24% Similarity=0.551 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSY 45 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgy 45 (376)
.-+...||..||.|...+.-||-.+-----|-||
T Consensus 6 Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~~Gf 39 (74)
T PF10073_consen 6 LRQFIERIERLEEEKKAISDDIKDVYAEAKGNGF 39 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4567889999999999999999999888889999
No 278
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.12 E-value=1.1e+03 Score=26.27 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=24.7
Q ss_pred hhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 017151 257 MGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ 296 (376)
Q Consensus 257 ~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~ 296 (376)
+..+|-=|=++--.+++.=..++|.-+.+|+..++=.|-+
T Consensus 692 ~~~~ldl~G~~~~eA~~~l~~~ld~a~~~g~~~v~IIHGk 731 (771)
T TIGR01069 692 ASLTLDLRGQRSEEALDRLEKFLNDALLAGYEVVLIIHGK 731 (771)
T ss_pred CCceEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3344444445555566666667788888887777766643
No 279
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.04 E-value=2.8e+02 Score=20.64 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhH
Q 017151 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186 (376)
Q Consensus 152 e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~ 186 (376)
...+.+|+..+.....-|+.|..++..++.....+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666665543
No 280
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=22.99 E-value=70 Score=25.61 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHh
Q 017151 235 SALEDELEKTRSSVENLQSKLRMGLEIENHLKKS 268 (376)
Q Consensus 235 saLEee~e~lr~si~~LQskLR~glEIEnHLkk~ 268 (376)
=|.-||+|-||+.|..|+.+.+ -||.||.+=|.
T Consensus 10 ~AVrEEVevLK~~I~eL~~~n~-~Le~EN~~Lk~ 42 (59)
T PF01166_consen 10 YAVREEVEVLKEQIAELEERNS-QLEEENNLLKQ 42 (59)
T ss_dssp GT-TTSHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 3567899999999999999877 47888876554
No 281
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.94 E-value=7.1e+02 Score=24.26 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=36.4
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHH-------HHHhhhhhHHHHHHHHHHHH---HHHHHHH
Q 017151 229 STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRE-------LEKKIIHSDKFISNAIAELR---LCHSQLR 298 (376)
Q Consensus 229 StskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~-------LEk~q~~~d~~i~ngis~L~---~~h~~~R 298 (376)
+|.+=+++|.-|.+.++..+..|-..|.=-.+...+|.+.+-. +|+.-.-+-.-+...++.++ +-|+..|
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~ 165 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKR 165 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554444444444443333 33333333333444444443 4556666
Q ss_pred HHHHHhhh
Q 017151 299 VHVVNSLE 306 (376)
Q Consensus 299 ~~Im~lL~ 306 (376)
+++..=|.
T Consensus 166 ~~L~~~l~ 173 (239)
T COG1579 166 EELKEKLD 173 (239)
T ss_pred HHHHHhcC
Confidence 66554443
No 282
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=22.90 E-value=4.7e+02 Score=22.11 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhh-HHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVAT-RMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIK 92 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vAT-RM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK 92 (376)
....++.+|+..|++...-+..- +++| +++.. +.+..=...|.+.|...+..+..+-.+=..-+..+-+|++=+
T Consensus 34 ~~~~~L~~L~~~~~~~~~~~~~~----~~~g-~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~ 108 (146)
T PRK07720 34 QVAEKLYELLKQKEDLEQAKEEK----LQSG-LSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEV 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666555544443 3344 22222 334444678999999999999998888888899999999988
Q ss_pred HHHHHH
Q 017151 93 GQLADL 98 (376)
Q Consensus 93 ~qLadL 98 (376)
.-+..|
T Consensus 109 k~~ekL 114 (146)
T PRK07720 109 KKYEKM 114 (146)
T ss_pred HHHHHH
Confidence 888888
No 283
>PF13166 AAA_13: AAA domain
Probab=22.86 E-value=8.8e+02 Score=25.26 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=18.5
Q ss_pred HHHHhh-cCCchHHHhhHHHHHhhhhhHHHHHHHHH
Q 017151 35 QLCMQQ-AGPSYLAVATRMHFQRTAGLEQEIEILKQ 69 (376)
Q Consensus 35 qLCMQQ-aGpgyl~vATRM~~QRtA~LEQeIE~Lkk 69 (376)
-+|-|. -++.+..--++.+..-...+.++++.+.+
T Consensus 259 pfC~q~~l~~~~~~~l~~~f~~~~~~~~~~l~~~~~ 294 (712)
T PF13166_consen 259 PFCQQEPLSEERKERLEKYFDEEYEKLIEELEKAIK 294 (712)
T ss_pred CCCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356675 67766665555555544444444444333
No 284
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.77 E-value=9e+02 Score=25.36 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 017151 155 LEELSSENIELKKQNATLRFDLEKQEEL 182 (376)
Q Consensus 155 ~~E~~s~~~~qk~~n~~Lq~dl~~~~eq 182 (376)
...+...+...++.|..|..+++.+...
T Consensus 312 ~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 312 SDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444555555555555544443
No 285
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.76 E-value=3.1e+02 Score=28.78 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017151 13 EALMARIQQLEHERDELRKDIE 34 (376)
Q Consensus 13 esl~aRI~qLEhERDELrKDIE 34 (376)
-++..+++.|+++|+++.|.|-
T Consensus 39 r~~~~~~e~l~~~rn~~sk~ig 60 (429)
T COG0172 39 RKLLRELEELQAERNELSKEIG 60 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888888876
No 286
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=22.74 E-value=1e+03 Score=25.99 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQL 36 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqL 36 (376)
.|..+++..++|+.+|.+=..+|
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~L 162 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQL 162 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888877655544
No 287
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.70 E-value=1.5e+02 Score=23.25 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhHH
Q 017151 234 ISALEDELEKTRSSVENLQSKLRMGLE 260 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQskLR~glE 260 (376)
|+.+..|++.++.+|+++..++|.-+.
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777766655443
No 288
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.58 E-value=7.1e+02 Score=24.10 Aligned_cols=95 Identities=25% Similarity=0.335 Sum_probs=0.0
Q ss_pred hhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHh
Q 017151 118 GCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIR 197 (376)
Q Consensus 118 s~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR 197 (376)
+-+-+.+..||+ |+|.+.-++..++...--+ |++.+++.+.=...|+.++.....-.+ +-.++-+.++
T Consensus 118 ~ll~~l~~l~~~-----~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le---~~~~~~~al~ 185 (216)
T KOG1962|consen 118 TLLRELATLRAN-----EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLE---KAQKKVDALK 185 (216)
T ss_pred HHHHHHHHHHhh-----HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_pred hhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhh
Q 017151 198 QQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMG 258 (376)
Q Consensus 198 ~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~g 258 (376)
|+...+-.|-+.|-..-++||+.+-+|
T Consensus 186 ----------------------------------Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 186 ----------------------------------KQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred ----------------------------------HHHHHcccHHHHHHHHHHHHHHHHhcc
No 289
>PTZ00046 rifin; Provisional
Probab=22.38 E-value=2e+02 Score=29.63 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHhhhHH
Q 017151 140 KEELMSQKFNEFQTRLEELSSENIELK-------KQNATLRFDLE 177 (376)
Q Consensus 140 ~Ee~m~qk~~e~e~R~~E~~s~~~~qk-------~~n~~Lq~dl~ 177 (376)
=..--+|.|.|.++|+.+-...|++|- .|+|.|..+|+
T Consensus 64 F~rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKeL~ 108 (358)
T PTZ00046 64 FDRQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKELM 108 (358)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 345568889999999999888888763 35666665554
No 290
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=22.31 E-value=4.9e+02 Score=24.35 Aligned_cols=41 Identities=32% Similarity=0.377 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcCCchHHHhhHHH----HHhhhhhHHHHHHHHH
Q 017151 29 LRKDIEQLCMQQAGPSYLAVATRMH----FQRTAGLEQEIEILKQ 69 (376)
Q Consensus 29 LrKDIEqLCMQQaGpgyl~vATRM~----~QRtA~LEQeIE~Lkk 69 (376)
+.++||++=.+..|-.+.++.+-|. -+|..+|++-.+.|+.
T Consensus 137 ~e~~~e~lv~~s~g~i~~~l~~~m~~~~G~~~l~~~~~~m~~l~~ 181 (229)
T PF11101_consen 137 FEQAIEQLVQESMGSILQALGNEMGSSEGDQNLQAFEQRMEGLQQ 181 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 6666677777777777766666664 3455555555555554
No 291
>PF10351 Apt1: Golgi-body localisation protein domain; InterPro: IPR019443 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This domain is found in fungi, metazoans and plants. These include FMP27 and "maize" protein APT1 and Arabidopsis homologues SABRE and KIP. APT1 is required for pollen tube growth. It is a Golgi-localised protein and appears to regulate vesicular trafficking []. SABRE and KIP are APT1 homologues and they are involved in the elongation of root cortex cells and pollen tubes respectively.
Probab=22.22 E-value=2.7e+02 Score=27.94 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=30.8
Q ss_pred HHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhh
Q 017151 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKI 276 (376)
Q Consensus 240 e~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q 276 (376)
.++.++..|..||+++|.=.+|+.+++.+-..|.+..
T Consensus 91 dl~~~~~~V~~LQ~~ir~l~~~~~~~~~~~~~L~~~~ 127 (457)
T PF10351_consen 91 DLEGLDDRVVSLQNRIRQLIEIERELEFRDKLLDDEG 127 (457)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3567788999999999999999999888877776655
No 292
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.18 E-value=1.9e+02 Score=24.23 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 017151 56 RTAGLEQEIEILKQKIAACARENSNLQEELS 86 (376)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (376)
+...++++++.+++++...-.+|.-|..|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888765
No 293
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.02 E-value=2.1e+02 Score=27.17 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhh-hhhHHHHHHhHHhHHHHHHh
Q 017151 232 KYISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKK 275 (376)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskL-R~glEIEnHLkk~~r~LEk~ 275 (376)
-=|..|+.+++.+++.++.|++++ |.--|+||.=+|..++.+.-
T Consensus 52 ~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~ 96 (208)
T PRK14154 52 PSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI 96 (208)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667778888888888777765 88889999888888877653
No 294
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.97 E-value=1.2e+02 Score=22.43 Aligned_cols=22 Identities=45% Similarity=0.681 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQL 36 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqL 36 (376)
+.+++..++++..+++|++++|
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777888888888887764
No 295
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.92 E-value=4.2e+02 Score=21.26 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=16.0
Q ss_pred cchhHhHHHHHHHHHHHHhhHHHHhhhh
Q 017151 228 TSTSKYISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 228 tStskyisaLEee~e~lr~si~~LQskL 255 (376)
.|...=+.-|++.++.+++.+++|++.+
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~ 110 (129)
T cd00890 83 KSLEEAIEFLKKRLETLEKQIEKLEKQL 110 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666655554
No 296
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=21.67 E-value=2.1e+02 Score=31.27 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=50.0
Q ss_pred ccccccccCcchhHhHHHH---HHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHH
Q 017151 219 SAEMWSFNDTSTSKYISAL---EDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAE 289 (376)
Q Consensus 219 s~~~WSfn~tStskyisaL---Eee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~ 289 (376)
+.+.|-=-++-+-+|-.+| |-+...+--++---|+-++|-.+=-.-++-....||.+.-+.-++++|||+.
T Consensus 40 ~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~~~~~ 113 (604)
T KOG3564|consen 40 FEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKCDISG 113 (604)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc
Confidence 3344444444466775555 3444555556666778888877766778888899999999999999999974
No 297
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=21.65 E-value=7.4e+02 Score=26.64 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 15 LMARIQQLEHERDELRKDIEQLCM 38 (376)
Q Consensus 15 l~aRI~qLEhERDELrKDIEqLCM 38 (376)
|..+|..|+.|++.|+..++.|=|
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~ 531 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELES 531 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666676666666555554443
No 298
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.55 E-value=1.2e+03 Score=26.34 Aligned_cols=209 Identities=28% Similarity=0.319 Sum_probs=119.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchH----HHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHhhhhHHHHHhh
Q 017151 57 TAGLEQEIEILKQKIAACARENSNLQ----EELSEAYRIKGQLAD------LHAAEVIKNMEAEKQVKFFQGCMAAAFAE 126 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQ----EELsEAYRiK~qLad------Lh~ae~~KN~e~EkqVkFfQs~vA~AFAE 126 (376)
.--|.+||+.|-++|...+++-..-- +=|-|--.+|-|+++ +-+-|+-+.+++=-|.+--+-.||..=-+
T Consensus 10 ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e 89 (772)
T KOG0999|consen 10 VEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEE 89 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 34456666666666665555433211 112333345555553 34567777777766666667778888888
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcc
Q 017151 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLET 206 (376)
Q Consensus 127 RD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~ 206 (376)
|.-||++---+| |+...+++.+++.-+.. ++.+|+.-.+.++.+.+|..+|-+.-..+- .
T Consensus 90 ~EesLLqESaak--E~~yl~kI~eleneLKq--------------~r~el~~~q~E~erl~~~~sd~~e~~~~~E-~--- 149 (772)
T KOG0999|consen 90 REESLLQESAAK--EEYYLQKILELENELKQ--------------LRQELTNVQEENERLEKVHSDLKESNAAVE-D--- 149 (772)
T ss_pred hHHHHHHHHHHh--HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhhcchhhH-H---
Confidence 999998855555 56666777666554432 345667777777777777777765432211 0
Q ss_pred cccchhhhhcccccccccccCcc-hhHhHHHHHHHHHHHHhhHHHHhhhhhh---hHHHHH--------HhHHhHHHHHH
Q 017151 207 SWEDKCACLLLDSAEMWSFNDTS-TSKYISALEDELEKTRSSVENLQSKLRM---GLEIEN--------HLKKSVRELEK 274 (376)
Q Consensus 207 s~~~Kc~~Ll~ds~~~WSfn~tS-tskyisaLEee~e~lr~si~~LQskLR~---glEIEn--------HLkk~~r~LEk 274 (376)
-- .=|.|-.--+-|-.+- .|.| +-||||+=+|...|++|.++ .| ||-+|+ -|+-.+.+...
T Consensus 150 ----qR-~rlr~elKe~KfRE~RllseY-SELEEENIsLQKqVs~LR~s-QVEyEglkheikRleEe~elln~q~ee~~~ 222 (772)
T KOG0999|consen 150 ----QR-RRLRDELKEYKFREARLLSEY-SELEEENISLQKQVSNLRQS-QVEYEGLKHEIKRLEEETELLNSQLEEAIR 222 (772)
T ss_pred ----HH-HHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011111123333332 3445 67999999888888888654 23 222222 13334444444
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 017151 275 KIIHSDKFISNAIAELRL 292 (376)
Q Consensus 275 ~q~~~d~~i~ngis~L~~ 292 (376)
-.-+.++-+..++-.|+.
T Consensus 223 Lk~IAekQlEEALeTlq~ 240 (772)
T KOG0999|consen 223 LKEIAEKQLEEALETLQQ 240 (772)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445667777777777764
No 299
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.51 E-value=1.1e+03 Score=26.02 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHH
Q 017151 233 YISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEK 274 (376)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk 274 (376)
-++++.+....|.++++- -=||=|++=-.|-.--|.||-
T Consensus 595 aL~amqdk~~~LE~sLsa---EtriKldLfsaLg~akrq~ei 633 (697)
T PF09726_consen 595 ALSAMQDKNQHLENSLSA---ETRIKLDLFSALGDAKRQLEI 633 (697)
T ss_pred HHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777766542 335666666666655555553
No 300
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.02 E-value=6.5e+02 Score=23.03 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=26.8
Q ss_pred cchhHhHHHHHHHHHHHHhhHHHHhhhhhh
Q 017151 228 TSTSKYISALEDELEKTRSSVENLQSKLRM 257 (376)
Q Consensus 228 tStskyisaLEee~e~lr~si~~LQskLR~ 257 (376)
-|..+...-||+-.+++-++|+.|.++++.
T Consensus 77 ~~~~~~~~~LEe~ke~l~k~i~~les~~e~ 106 (131)
T KOG1760|consen 77 VKLDKLQDQLEEKKETLEKEIEELESELES 106 (131)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888999999999999999999998875
No 301
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=20.99 E-value=2.9e+02 Score=27.79 Aligned_cols=47 Identities=23% Similarity=0.182 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhH
Q 017151 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESF 186 (376)
Q Consensus 140 ~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~ 186 (376)
+.++|+.-+.-.-.|+++|+......|..|..|-+.+.++++++.-+
T Consensus 214 nreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~ 260 (279)
T KOG0837|consen 214 NREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAEL 260 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999998833
No 302
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=20.95 E-value=7.6e+02 Score=23.83 Aligned_cols=118 Identities=31% Similarity=0.385 Sum_probs=66.3
Q ss_pred chHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 017151 11 ESEALMARIQQLEHER-------DELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQE 83 (376)
Q Consensus 11 ~~esl~aRI~qLEhER-------DELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQE 83 (376)
..|-|.+|+...|-|+ .-|-+|+. .|++ ..=.||..||. .|+-||+
T Consensus 17 skeel~~rLR~~E~ek~~~m~~~g~lm~evN---------------rrlQ-----~hl~EIR~LKe-------~NqkLqe 69 (195)
T PF10226_consen 17 SKEELVRRLRRAEAEKMSLMVEHGRLMKEVN---------------RRLQ-----QHLNEIRGLKE-------VNQKLQE 69 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------------HHHH-----HHHHHHHHHHH-------HHHHHHH
Confidence 4678899999999874 44444433 3322 22346777776 5666776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 84 ELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENI 163 (376)
Q Consensus 84 ELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~ 163 (376)
|=-|-.-+=--|.| +.-|-+.+..+---|=-.-| ++|- ..-..-.+|+.+++.|.+++-....
T Consensus 70 dNqELRdLCCFLDd----dRqKgrklarEWQrFGryta--------~vmr-----~eV~~Y~~KL~eLE~kq~~L~rEN~ 132 (195)
T PF10226_consen 70 DNQELRDLCCFLDD----DRQKGRKLAREWQRFGRYTA--------SVMR-----QEVAQYQQKLKELEDKQEELIRENL 132 (195)
T ss_pred HHHHHHHHHcccch----hHHHhHHHhHHHHHhhhHHH--------HHHH-----HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 65554444334443 33444444444333322222 2232 2222345778888888888887777
Q ss_pred HHHhhhHHH
Q 017151 164 ELKKQNATL 172 (376)
Q Consensus 164 ~qk~~n~~L 172 (376)
+.|++...|
T Consensus 133 eLKElcl~L 141 (195)
T PF10226_consen 133 ELKELCLYL 141 (195)
T ss_pred HHHHHHHHH
Confidence 777777444
No 303
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=20.87 E-value=60 Score=30.07 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 017151 58 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQG 118 (376)
Q Consensus 58 A~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs 118 (376)
-++++++..+++++.+...++ -+++.+-|.++.+|+.+.+.-..--..-..=++|+|.
T Consensus 18 P~~~~~~~~~e~~~~~i~~~~---~~~v~~y~~l~~~l~~~~~~~~~~i~~p~~~~~fL~~ 75 (268)
T PF13234_consen 18 PELEKKLKELEEELDAIKIED---EEDVEEYYDLRQELEELRKELRKIITSPKYCLPFLQP 75 (268)
T ss_dssp HHHHHHHHHHHHHHHCS--TT---CTCCHHHHHHHHHHHHHHHHHHHHHCTCCCHHHHS-T
T ss_pred HHHHHHHHHHHHHHHhccccc---HhHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHhCCC
Confidence 467889999999999988877 5778999999999998754322222333444677773
No 304
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=20.86 E-value=1.9e+02 Score=22.75 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017151 13 EALMARIQQLEHERDELR 30 (376)
Q Consensus 13 esl~aRI~qLEhERDELr 30 (376)
+.++.+|.+++..|..+-
T Consensus 47 ~~l~~~l~~le~~r~~~~ 64 (143)
T PF05130_consen 47 QELLEELRELEKQRQQLL 64 (143)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555554443
No 305
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=20.51 E-value=6.4e+02 Score=23.32 Aligned_cols=28 Identities=36% Similarity=0.523 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCM 38 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCM 38 (376)
.++.|.+-+..|+.+-..+++.|+.+.-
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999975
No 306
>PF14989 CCDC32: Coiled-coil domain containing 32
Probab=20.43 E-value=84 Score=28.66 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=14.5
Q ss_pred hHhHHHHHHHHHHHHhhH
Q 017151 231 SKYISALEDELEKTRSSV 248 (376)
Q Consensus 231 skyisaLEee~e~lr~si 248 (376)
..||++||-.|.+++..=
T Consensus 55 ~~YLasLE~KL~rik~~~ 72 (148)
T PF14989_consen 55 EVYLASLERKLKRIKGKN 72 (148)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 359999999998887654
No 307
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.42 E-value=8.8e+02 Score=24.98 Aligned_cols=89 Identities=28% Similarity=0.305 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
+-..|-++|+.-..|-.-+||-.|.| |.--|.|.+- .|.=-|.|||...-..--=+|| --
T Consensus 134 dea~L~~Kierrk~ElEr~rkRle~L--qsiRP~~MdE-----------yE~~EeeLqkly~~Y~l~f~nl-------~y 193 (338)
T KOG3647|consen 134 DEAALGSKIERRKAELERTRKRLEAL--QSIRPAHMDE-----------YEDCEEELQKLYQRYFLRFHNL-------DY 193 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHH-----------HHHHHHHHHHHHHHHHHHHhhH-------HH
Confidence 34455666655555555566766765 6777888442 2222234444222222111222 23
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhh
Q 017151 91 IKGQLADLHAAEVIKNMEAEKQVKFFQGC 119 (376)
Q Consensus 91 iK~qLadLh~ae~~KN~e~EkqVkFfQs~ 119 (376)
+|+||.|+|+-|-..-+++|+-..|-|-.
T Consensus 194 L~~qldd~~rse~~rqeeaensm~~i~ek 222 (338)
T KOG3647|consen 194 LKSQLDDRTRSEPIRQEEAENSMPFIPEK 222 (338)
T ss_pred HHHHHHHHhhhhHHHHHHHHhcchhhHHH
Confidence 78899999998888888888888887643
No 308
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.28 E-value=4.5e+02 Score=24.12 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=35.5
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhh-hhhHHHHHHhHHhHHHHHHhh
Q 017151 230 TSKYISALEDELEKTRSSVENLQSKL-RMGLEIENHLKKSVRELEKKI 276 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskL-R~glEIEnHLkk~~r~LEk~q 276 (376)
....+.+|+++++.++..++.+++++ |.--|+||-=||..++.+.-.
T Consensus 18 ~~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~ 65 (176)
T PRK14151 18 EAAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAH 65 (176)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777887777777765 888899999888888876543
No 309
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.23 E-value=1.5e+03 Score=26.92 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh-hcccccchhhhhccccccc
Q 017151 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV-LETSWEDKCACLLLDSAEM 222 (376)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~-~~~s~~~Kc~~Ll~ds~~~ 222 (376)
+...+...+.|.+.+++...+.-++...+-++.+....+++ ++|.++... .+.+|-.||.-+-. .-.
T Consensus 683 ~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~~~~~~I~~~~----------~~~~~~~~~~~~~~~k~~e~~i~~--~~~ 750 (1072)
T KOG0979|consen 683 LNSELKSYQQRKERIENLVVDLDRQEEEYAASEAKKILDTE----------DMRIQSIRWHLELTDKHKEIGIKE--KNE 750 (1072)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHh--hhh
Confidence 33556666677776777666666666777777777777776 345455444 67788888843321 112
Q ss_pred cccc-Ccchh-----HhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhh--HHHHHHHHHHHHHHH
Q 017151 223 WSFN-DTSTS-----KYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHS--DKFISNAIAELRLCH 294 (376)
Q Consensus 223 WSfn-~tSts-----kyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~--d~~i~ngis~L~~~h 294 (376)
|++- +++-+ ..|..+|.-..-+.+.-+-|+..+ +|.++.|.++-+.+.+. +.-+++ +|
T Consensus 751 ~~~~~~s~~~~iea~~~i~~~e~~i~~~~~~~~~lk~a~-------~~~k~~a~~~~~~~~~~t~~~~~~s-------~~ 816 (1072)
T KOG0979|consen 751 SSYMARSNKNNIEAERKIEKLEDNISFLEAREDLLKTAL-------EDKKKEAAEKRKEQSLQTLKREIMS-------PA 816 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHhcccchhHHHhhhcccc-------cc
Confidence 3331 21110 112222222222223333333222 24444444444333322 222222 22
Q ss_pred HH--HHH-HHHHhhhhccchhhhhHHHHHhhh
Q 017151 295 SQ--LRV-HVVNSLEEGRSHIKSISDVIEEKT 323 (376)
Q Consensus 295 ~~--~R~-~Im~lL~e~~s~iks~v~~i~ekl 323 (376)
+. .|- ..|..+.+..-.+.++.+.|.+.+
T Consensus 817 ~~~~ek~~~~~~e~~e~p~t~~eld~~I~~e~ 848 (1072)
T KOG0979|consen 817 TNKIEKSLVLMKELAEEPTTMDELDQAITDEL 848 (1072)
T ss_pred ccchhhHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 21 121 478888999999999998888877
No 310
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=20.17 E-value=4.3e+02 Score=21.49 Aligned_cols=46 Identities=33% Similarity=0.437 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhh---HHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 017151 235 SALEDELEKTRSS---VENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 283 (376)
Q Consensus 235 saLEee~e~lr~s---i~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i 283 (376)
+||+.|++.||+= |+.+-.-||-.. .|+.+=.+..+.-..++|..+
T Consensus 1 ~aL~kEL~~Lr~IN~~ie~~~~~L~~a~---~~~~~v~~~~~~t~~LLd~w~ 49 (78)
T PF08651_consen 1 QALEKELEQLRKINPVIEGLIETLRSAK---SNMNRVQETVESTNTLLDKWI 49 (78)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4788888887754 444444444432 566666666666666666655
Done!