Query 017151
Match_columns 376
No_of_seqs 15 out of 17
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 09:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 92.7 1.1 3.9E-05 42.5 11.9 63 136-198 527-589 (597)
2 1c1g_A Tropomyosin; contractIl 92.2 3.8 0.00013 33.0 34.7 23 14-36 3-25 (284)
3 1c1g_A Tropomyosin; contractIl 92.1 4 0.00014 32.8 33.7 24 233-256 217-240 (284)
4 1i84_S Smooth muscle myosin he 91.0 1.1 3.6E-05 48.0 10.6 13 20-32 781-793 (1184)
5 3s4r_A Vimentin; alpha-helix, 90.9 1.1 3.8E-05 35.7 8.2 65 11-87 17-81 (93)
6 2v71_A Nuclear distribution pr 90.7 9.1 0.00031 34.4 15.3 121 134-301 19-143 (189)
7 1i84_S Smooth muscle myosin he 90.3 1.2 4.1E-05 47.6 10.2 13 311-323 1148-1160(1184)
8 3o0z_A RHO-associated protein 90.0 10 0.00035 33.8 18.2 124 134-294 29-152 (168)
9 3oja_B Anopheles plasmodium-re 88.9 14 0.00047 35.2 15.3 38 146-183 544-581 (597)
10 3tnu_B Keratin, type II cytosk 88.8 6 0.0002 32.4 11.2 66 146-251 36-101 (129)
11 3o0z_A RHO-associated protein 87.5 3 0.0001 37.2 9.2 77 14-96 52-138 (168)
12 2fxo_A Myosin heavy chain, car 86.3 13 0.00043 30.6 15.4 108 56-191 14-121 (129)
13 3tnu_A Keratin, type I cytoske 86.3 6.4 0.00022 32.3 10.0 66 146-251 38-103 (131)
14 2dfs_A Myosin-5A; myosin-V, in 85.0 10 0.00035 40.9 13.3 30 58-87 924-953 (1080)
15 1go4_E MAD1 (mitotic arrest de 84.0 3.7 0.00013 33.9 7.4 29 11-39 13-41 (100)
16 1m1j_B Fibrinogen beta chain; 83.3 9.9 0.00034 38.1 11.6 63 230-292 91-153 (464)
17 2zqm_A Prefoldin beta subunit 82.8 6.2 0.00021 30.6 8.0 77 13-89 23-111 (117)
18 1nkp_A C-MYC, MYC proto-oncoge 82.4 3.5 0.00012 32.3 6.5 54 188-253 20-73 (88)
19 2dfs_A Myosin-5A; myosin-V, in 82.3 39 0.0013 36.5 16.4 14 25-38 961-974 (1080)
20 3ol1_A Vimentin; structural ge 82.3 19 0.00065 29.4 12.6 53 60-112 18-70 (119)
21 2efr_A General control protein 80.8 28 0.00096 30.3 20.7 121 60-197 26-146 (155)
22 1fxk_A Prefoldin; archaeal pro 77.2 9.5 0.00032 29.2 7.3 75 12-86 17-103 (107)
23 3vkg_A Dynein heavy chain, cyt 76.3 1.5E+02 0.0051 36.2 22.5 24 46-69 1901-1924(3245)
24 2b5u_A Colicin E3; high resolu 76.2 43 0.0015 34.6 13.7 50 72-131 317-376 (551)
25 3hnw_A Uncharacterized protein 74.7 18 0.00061 30.6 9.0 32 132-163 103-134 (138)
26 1fxk_A Prefoldin; archaeal pro 74.0 17 0.00056 27.8 7.9 84 143-255 5-88 (107)
27 2ke4_A CDC42-interacting prote 72.7 12 0.00042 30.2 7.2 71 12-98 10-88 (98)
28 1hlo_A Protein (transcription 72.4 5.7 0.0002 30.1 4.9 52 189-253 27-78 (80)
29 1am9_A Srebp-1A, protein (ster 72.3 5.7 0.00019 30.5 4.9 53 189-255 21-73 (82)
30 3vkg_A Dynein heavy chain, cyt 71.6 1.2E+02 0.004 37.0 17.6 95 142-237 2031-2128(3245)
31 1nkp_B MAX protein, MYC proto- 71.1 7.8 0.00027 29.4 5.4 53 189-254 17-69 (83)
32 1l8d_A DNA double-strand break 68.8 20 0.00068 27.8 7.4 50 37-86 53-102 (112)
33 2v4h_A NF-kappa-B essential mo 68.4 14 0.00048 31.2 6.8 66 12-81 40-109 (110)
34 1deq_A Fibrinogen (alpha chain 67.7 19 0.00064 35.8 8.6 56 249-304 95-150 (390)
35 2zqm_A Prefoldin beta subunit 66.8 24 0.00081 27.2 7.5 85 142-255 9-93 (117)
36 3swy_A Cyclic nucleotide-gated 66.1 15 0.0005 26.7 5.6 40 236-275 2-45 (46)
37 4h22_A Leucine-rich repeat fli 65.7 47 0.0016 27.7 9.4 61 124-184 22-82 (103)
38 3mtu_A Tropomyosin alpha-1 cha 65.7 7 0.00024 30.1 4.2 32 10-42 16-51 (75)
39 2akf_A Coronin-1A; coiled coil 64.9 3.6 0.00012 28.3 2.1 22 234-255 1-22 (32)
40 1zme_C Proline utilization tra 62.7 6.8 0.00023 27.7 3.4 27 230-256 42-68 (70)
41 3swk_A Vimentin; cytoskeleton, 61.9 25 0.00087 27.5 6.8 59 63-121 1-59 (86)
42 3etw_A Adhesin A; antiparallel 60.6 76 0.0026 26.8 10.9 37 56-98 10-46 (119)
43 1nlw_A MAD protein, MAX dimeri 60.4 12 0.0004 29.0 4.6 56 188-255 15-70 (80)
44 3na7_A HP0958; flagellar bioge 59.4 96 0.0033 27.5 17.7 58 14-88 15-72 (256)
45 1wt6_A Myotonin-protein kinase 57.2 53 0.0018 26.5 7.9 65 121-185 2-70 (81)
46 2v66_B Nuclear distribution pr 54.4 94 0.0032 25.9 13.5 63 53-115 8-74 (111)
47 3swf_A CGMP-gated cation chann 53.3 26 0.00089 27.8 5.5 41 236-276 4-48 (74)
48 1ci6_A Transcription factor AT 53.3 27 0.00092 25.8 5.3 39 153-191 23-61 (63)
49 3hnw_A Uncharacterized protein 53.0 57 0.002 27.5 8.0 30 57-86 105-134 (138)
50 1joc_A EEA1, early endosomal a 52.7 55 0.0019 26.7 7.7 52 125-176 4-55 (125)
51 2wt7_A Proto-oncogene protein 51.7 38 0.0013 24.8 5.9 38 153-190 23-60 (63)
52 3ghg_B Fibrinogen beta chain; 51.6 30 0.001 35.0 6.9 112 211-323 62-179 (461)
53 1t2k_D Cyclic-AMP-dependent tr 51.3 35 0.0012 24.7 5.6 36 154-189 23-58 (61)
54 3etv_A Protein transport prote 51.2 41 0.0014 33.1 7.7 33 293-325 300-333 (355)
55 2jo8_A Serine/threonine-protei 49.9 36 0.0012 25.3 5.5 39 268-306 11-49 (51)
56 3ghg_A Fibrinogen alpha chain; 49.2 33 0.0011 35.6 6.9 94 229-323 47-147 (562)
57 3q8t_A Beclin-1; autophagy, AT 48.8 1E+02 0.0034 24.5 13.0 48 132-179 46-93 (96)
58 3ghg_A Fibrinogen alpha chain; 47.8 35 0.0012 35.4 6.8 99 203-304 36-147 (562)
59 1m1j_A Fibrinogen alpha subuni 47.0 1.2E+02 0.0042 31.0 10.5 85 219-303 38-147 (491)
60 3abf_A 4-oxalocrotonate tautom 46.9 19 0.00066 24.4 3.5 29 204-232 32-60 (64)
61 1m1j_B Fibrinogen beta chain; 45.0 2.5E+02 0.0087 28.1 14.0 39 146-184 100-138 (464)
62 3ssb_C IMPI alpha, inducible m 44.7 7.4 0.00025 27.8 1.1 16 344-359 20-35 (40)
63 2d1l_A Metastasis suppressor p 44.6 1.9E+02 0.0065 26.7 10.7 60 231-290 119-194 (253)
64 1ic2_A Tropomyosin alpha chain 44.6 1E+02 0.0034 23.4 8.6 65 14-88 3-67 (81)
65 1ic2_A Tropomyosin alpha chain 44.1 1E+02 0.0035 23.3 9.7 54 132-185 13-66 (81)
66 1p9i_A Cortexillin I/GCN4 hybr 43.2 28 0.00094 23.6 3.6 25 230-254 4-28 (31)
67 3ghg_C Fibrinogen gamma chain; 43.0 2.6E+02 0.0089 27.7 12.2 95 220-323 13-135 (411)
68 2e7s_A RAB guanine nucleotide 41.6 1.2E+02 0.0041 26.2 8.3 52 120-181 80-131 (135)
69 3i00_A HIP-I, huntingtin-inter 41.6 1.3E+02 0.0045 25.0 8.3 25 107-138 50-74 (120)
70 1lrz_A FEMA, factor essential 41.3 84 0.0029 29.4 7.9 53 230-283 245-297 (426)
71 3d5a_X RF1, peptide chain rele 40.4 57 0.002 31.8 6.8 96 144-259 1-96 (354)
72 2er8_A Regulatory protein Leu3 40.1 17 0.00058 25.9 2.4 26 228-253 45-70 (72)
73 1fxk_C Protein (prefoldin); ar 39.8 1.4E+02 0.0048 23.7 9.8 79 11-89 16-129 (133)
74 1jnm_A Proto-oncogene C-JUN; B 39.5 29 0.001 25.2 3.6 37 153-189 22-58 (62)
75 2pms_C Pneumococcal surface pr 39.5 94 0.0032 26.6 7.2 98 143-282 10-122 (125)
76 3i00_A HIP-I, huntingtin-inter 39.4 82 0.0028 26.3 6.8 64 17-86 15-78 (120)
77 1l8d_A DNA double-strand break 38.0 1.2E+02 0.0042 23.3 7.2 26 231-256 63-88 (112)
78 1deq_A Fibrinogen (alpha chain 37.2 3.3E+02 0.011 27.2 13.2 120 58-191 63-193 (390)
79 1f5n_A Interferon-induced guan 36.9 1.3E+02 0.0044 30.5 9.0 54 114-167 463-522 (592)
80 3m91_A Proteasome-associated A 35.8 1.2E+02 0.004 22.3 6.3 42 152-193 8-49 (51)
81 4avm_A Bridging integrator 2; 34.9 2.3E+02 0.008 24.8 13.3 27 11-37 34-60 (237)
82 3vmx_A Voltage-gated hydrogen 34.7 46 0.0016 24.6 4.0 26 11-36 12-37 (48)
83 1g6u_A Domain swapped dimer; d 33.9 35 0.0012 25.0 3.2 24 233-256 21-44 (48)
84 3u59_A Tropomyosin beta chain; 33.6 1.7E+02 0.0059 22.9 9.2 53 133-185 17-69 (101)
85 2dq0_A Seryl-tRNA synthetase; 33.0 1.3E+02 0.0045 29.3 8.1 23 14-36 42-64 (455)
86 1sig_A Sigma70, RNA polymerase 32.8 1.2E+02 0.0041 27.4 7.3 67 11-77 156-241 (339)
87 2fxo_A Myosin heavy chain, car 32.4 2E+02 0.0069 23.3 15.3 40 145-184 82-121 (129)
88 3cvf_A Homer-3, homer protein 32.3 1.9E+02 0.0064 22.9 8.1 49 147-198 21-69 (79)
89 2l5g_B Putative uncharacterize 31.5 41 0.0014 24.3 3.2 24 233-256 10-33 (42)
90 4ati_A MITF, microphthalmia-as 31.3 24 0.00083 28.9 2.3 69 189-274 42-112 (118)
91 3t98_B Nucleoporin NUP58/NUP45 30.8 1.9E+02 0.0064 23.2 7.3 56 144-199 10-73 (93)
92 1m1j_C Fibrinogen gamma chain; 30.6 2.8E+02 0.0096 27.2 9.9 46 221-266 14-65 (409)
93 1joc_A EEA1, early endosomal a 30.1 1.8E+02 0.0063 23.6 7.3 22 51-72 7-28 (125)
94 1hjb_A Ccaat/enhancer binding 30.0 1.2E+02 0.0041 24.1 6.0 36 148-190 38-73 (87)
95 1gu4_A CAAT/enhancer binding p 29.9 1.2E+02 0.004 23.7 5.8 31 146-176 36-66 (78)
96 3u1c_A Tropomyosin alpha-1 cha 29.8 2.1E+02 0.0071 22.6 11.6 25 232-256 51-75 (101)
97 3viq_B Mating-type switching p 29.2 57 0.0019 26.3 4.0 32 12-43 3-34 (85)
98 2efl_A Formin-binding protein 29.1 2.7E+02 0.0093 23.8 22.4 53 240-295 173-226 (305)
99 3u1c_A Tropomyosin alpha-1 cha 29.1 2.1E+02 0.0073 22.6 9.2 53 133-185 17-69 (101)
100 2opa_A Probable tautomerase YW 28.4 61 0.0021 21.6 3.6 28 204-231 31-58 (61)
101 2lw1_A ABC transporter ATP-bin 27.7 2E+02 0.007 21.9 7.3 55 16-74 21-75 (89)
102 3qne_A Seryl-tRNA synthetase, 27.3 2.1E+02 0.0072 28.6 8.6 23 14-36 44-66 (485)
103 3ajw_A Flagellar FLIJ protein; 27.2 2.3E+02 0.0077 22.2 10.8 100 137-274 17-116 (150)
104 4dzn_A Coiled-coil peptide CC- 27.1 52 0.0018 22.5 2.9 20 57-76 4-23 (33)
105 1gd2_E Transcription factor PA 26.9 1.2E+02 0.004 23.3 5.3 39 146-184 29-67 (70)
106 1otf_A 4-oxalocrotonate tautom 26.9 56 0.0019 21.8 3.2 28 204-231 31-58 (62)
107 3t5s_A Gilaa.00834.A, macropha 26.7 30 0.001 28.3 2.1 42 181-228 92-133 (135)
108 1hfo_A Migration inhibitory fa 26.6 53 0.0018 24.9 3.3 26 204-229 87-112 (113)
109 3fhn_A Protein transport prote 26.6 1.9E+02 0.0067 30.4 8.5 80 9-94 9-92 (706)
110 3azd_A Short alpha-tropomyosin 26.4 46 0.0016 22.7 2.6 27 10-36 4-30 (37)
111 2os5_A Acemif; macrophage migr 26.4 61 0.0021 25.0 3.7 27 204-230 88-114 (119)
112 4fla_A Regulation of nuclear P 26.1 3.1E+02 0.011 23.4 8.9 47 142-191 78-124 (152)
113 1uiz_A MIF, macrophage migrati 25.9 54 0.0019 25.0 3.3 26 204-229 88-113 (115)
114 3nmd_A CGMP dependent protein 25.9 2E+02 0.0068 22.6 6.5 28 149-176 36-63 (72)
115 1qvr_A CLPB protein; coiled co 25.8 5.4E+02 0.018 26.2 11.5 45 53-97 428-472 (854)
116 3fwu_A Macrophage migration in 25.7 39 0.0013 27.5 2.6 40 181-228 92-131 (133)
117 2dgc_A Protein (GCN4); basic d 25.2 87 0.003 23.2 4.2 32 152-183 29-60 (63)
118 3ra3_A P1C; coiled coil domain 25.2 41 0.0014 22.4 2.1 22 234-255 2-23 (28)
119 3fwt_A Macrophage migration in 24.5 48 0.0016 26.9 2.9 40 181-228 92-131 (133)
120 2ke4_A CDC42-interacting prote 24.4 2.1E+02 0.0073 22.9 6.6 68 55-123 15-88 (98)
121 3twe_A Alpha4H; unknown functi 24.2 66 0.0023 21.2 2.9 23 236-258 5-27 (27)
122 3dxi_A Putative aldolase; TIM 24.1 70 0.0024 29.9 4.3 35 289-323 274-308 (320)
123 2nrj_A HBL B protein; enteroto 23.7 34 0.0012 32.3 2.1 38 55-99 226-263 (346)
124 2oqq_A Transcription factor HY 23.5 1.6E+02 0.0054 21.3 5.0 25 232-256 3-27 (42)
125 1hjb_A Ccaat/enhancer binding 23.4 1.6E+02 0.0054 23.4 5.6 39 135-173 32-70 (87)
126 2yy0_A C-MYC-binding protein; 23.3 71 0.0024 23.3 3.3 29 57-85 21-49 (53)
127 2ve8_A FTSK, DNA translocase F 22.7 33 0.0011 26.8 1.5 28 232-259 11-38 (73)
128 1yke_B RNA polymerase II holoe 22.6 3.6E+02 0.012 23.0 9.4 74 14-90 54-127 (151)
129 1jnm_A Proto-oncogene C-JUN; B 22.5 1E+02 0.0034 22.4 4.0 25 12-36 24-48 (62)
130 1nkp_B MAX protein, MYC proto- 22.4 1E+02 0.0035 23.1 4.2 26 14-39 51-76 (83)
131 2ve7_A Kinetochore protein HEC 22.0 85 0.0029 29.2 4.4 22 206-227 255-277 (315)
132 3swk_A Vimentin; cytoskeleton, 21.9 2.8E+02 0.0096 21.5 9.7 72 112-190 8-79 (86)
133 2dgc_A Protein (GCN4); basic d 21.7 90 0.0031 23.1 3.7 26 11-36 31-56 (63)
134 3na7_A HP0958; flagellar bioge 21.6 4.2E+02 0.014 23.4 21.8 43 81-127 13-55 (256)
135 4g1a_A AQ-C16C19 peptide; heli 21.5 36 0.0012 23.2 1.3 20 57-76 2-21 (32)
136 2lw1_A ABC transporter ATP-bin 21.4 1.6E+02 0.0053 22.6 5.1 17 57-73 31-47 (89)
137 1f5n_A Interferon-induced guan 21.1 6.5E+02 0.022 25.4 12.8 33 134-166 507-539 (592)
138 3viq_B Mating-type switching p 21.1 1E+02 0.0035 24.8 4.1 28 229-256 5-32 (85)
139 1t2k_D Cyclic-AMP-dependent tr 21.0 2.3E+02 0.008 20.2 6.3 37 146-182 22-58 (61)
140 2qlz_A Transcription factor PF 20.9 2.8E+02 0.0097 24.6 7.4 56 264-319 127-188 (232)
141 2qyw_A Vesicle transport throu 20.9 2.3E+02 0.008 22.3 6.2 41 126-166 46-98 (102)
142 1zxa_A CGMP-dependent protein 20.8 1.4E+02 0.0049 23.0 4.7 37 140-176 12-48 (67)
143 1a93_B MAX protein, coiled coi 20.7 97 0.0033 21.5 3.3 21 156-176 10-30 (34)
144 1vcs_A Vesicle transport throu 20.7 2.9E+02 0.01 21.7 6.7 42 125-166 34-87 (102)
145 2dq3_A Seryl-tRNA synthetase; 20.6 1.3E+02 0.0043 29.0 5.4 22 14-35 41-62 (425)
146 2xcz_A Possible ATLS1-like lig 20.5 62 0.0021 24.7 2.7 26 204-229 88-113 (115)
147 3mtu_E Head morphogenesis prot 20.4 1.2E+02 0.004 24.3 4.2 28 61-88 43-70 (77)
148 1ykh_B RNA polymerase II holoe 20.3 3.7E+02 0.013 22.2 9.3 74 14-90 54-127 (132)
149 2wvr_A Geminin; DNA replicatio 20.2 4E+02 0.014 24.6 8.3 61 144-208 113-174 (209)
150 1m1j_C Fibrinogen gamma chain; 20.2 6.2E+02 0.021 24.8 10.4 10 48-57 25-34 (409)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.75 E-value=1.1 Score=42.53 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=41.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 017151 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 198 (376)
Q Consensus 136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~ 198 (376)
+.++..+..-+++..+++..++++..+++++..-..++.+.+.++.+...+...+++=|+-|.
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 333444445566677777777888888888888888888888888888877788887777763
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.24 E-value=3.8 Score=32.98 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQL 36 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqL 36 (376)
.+..++..|+++.+.+..+++.|
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l 25 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555666666666666655554
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.05 E-value=4 Score=32.84 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhh
Q 017151 233 YISALEDELEKTRSSVENLQSKLR 256 (376)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR 256 (376)
-+..+++++..++..++.++..++
T Consensus 217 ~~~~~~~~l~~l~~~~~~~~~~~~ 240 (284)
T 1c1g_A 217 KEDKYEEEIKVLSDKLKEAETRAE 240 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.01 E-value=1.1 Score=47.97 Aligned_cols=13 Identities=46% Similarity=0.501 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 017151 20 QQLEHERDELRKD 32 (376)
Q Consensus 20 ~qLEhERDELrKD 32 (376)
..||..|++.-.+
T Consensus 781 ~~LE~~r~~~l~~ 793 (1184)
T 1i84_S 781 AHLEEERDLKITD 793 (1184)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555544333
No 5
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.94 E-value=1.1 Score=35.73 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSE 87 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (376)
--++.+.+|..||.+=-.|..+|+++.- .||+ ++. .-.+.+|+.|+.++...+.+|..|.-|+..
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~--~~~~------~~~----~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKG--QGKS------RLG----DLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCC------CcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999863 3443 222 125888999999999999999998888765
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.70 E-value=9.1 Score=34.42 Aligned_cols=121 Identities=26% Similarity=0.280 Sum_probs=68.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhccccc
Q 017151 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIE----LKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWE 209 (376)
Q Consensus 134 aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~----qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~ 209 (376)
|++.+.+-+.+-..|++|++=-+||+..++. ....+..|+..++.++...++. -
T Consensus 19 ~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~----------------------k 76 (189)
T 2v71_A 19 SMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEAL----------------------K 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H
Confidence 4445555555556666776666555554433 3334555555555555554422 2
Q ss_pred chhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHH
Q 017151 210 DKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAE 289 (376)
Q Consensus 210 ~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~ 289 (376)
.|..-.-.. .++-|++|+.++..++...+ .|++++|.||..+--+..=.|+-.+.
T Consensus 77 ~K~~~~~~e-----------~~~~~~~Lq~el~~l~~~~~--------------~l~~~ireLEq~NDdlEr~~R~~~~S 131 (189)
T 2v71_A 77 EKLEHQYAQ-----------SYKQVSVLEDDLSQTRAIKE--------------QLHKYVRELEQANDDLERAKRATIMS 131 (189)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 222111100 23458888888888876554 45566777777777776667777777
Q ss_pred HHHHHHHHHHHH
Q 017151 290 LRLCHSQLRVHV 301 (376)
Q Consensus 290 L~~~h~~~R~~I 301 (376)
|.-+.+.+=.-|
T Consensus 132 leD~e~kln~ai 143 (189)
T 2v71_A 132 LEDFEQRLNQAI 143 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666654444
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.30 E-value=1.2 Score=47.60 Aligned_cols=13 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhhhhHHHHHhhh
Q 017151 311 HIKSISDVIEEKT 323 (376)
Q Consensus 311 ~iks~v~~i~ekl 323 (376)
.+..-+..+.++|
T Consensus 1148 ~L~~ele~L~~~I 1160 (1184)
T 1i84_S 1148 DLSEELEALKTEL 1160 (1184)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444444
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.96 E-value=10 Score=33.79 Aligned_cols=124 Identities=16% Similarity=0.227 Sum_probs=81.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhh
Q 017151 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA 213 (376)
Q Consensus 134 aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~ 213 (376)
+.|.|...-.++...+.++.-++||+..+.......+.|+.+++.+..+.+. +-|.++.. .++
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q---------Er~~r~q~-se~------- 91 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA---------ERRDRGHD-SEM------- 91 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH-HHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH-HHH-------
Confidence 4466666667788888899999999999999999999999999999888872 11111110 000
Q ss_pred hhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017151 214 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 293 (376)
Q Consensus 214 ~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~ 293 (376)
+.| +-.=|.+|++|++.++.+..++..- =++|+.++..|||..+-++==+.=-|..||.-
T Consensus 92 --~~e-----------lq~ri~~L~~El~~~k~~~~k~~~e-------~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 92 --IGD-----------LQARITSLQEEVKHLKHNLEKVEGE-------RKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp --HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 000 1124666666666666666655443 45899999999998887763333445556554
Q ss_pred H
Q 017151 294 H 294 (376)
Q Consensus 294 h 294 (376)
|
T Consensus 152 ~ 152 (168)
T 3o0z_A 152 L 152 (168)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.88 E-value=14 Score=35.16 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhh
Q 017151 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~ 183 (376)
++..+++.++++......+.++-+.++..++..+++.+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556666666666666666666666666666665543
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.85 E-value=6 Score=32.36 Aligned_cols=66 Identities=23% Similarity=0.326 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccc
Q 017151 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSf 225 (376)
..+.++...+..++..+..++.+|..|...++..+.+-+.-.+-
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~------------------------------------ 79 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD------------------------------------ 79 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 45777788888888888888888888888887766655411111
Q ss_pred cCcchhHhHHHHHHHHHHHHhhHHHH
Q 017151 226 NDTSTSKYISALEDELEKTRSSVENL 251 (376)
Q Consensus 226 n~tStskyisaLEee~e~lr~si~~L 251 (376)
...-|+.||.++..+|..+...
T Consensus 80 ----~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 80 ----ARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhHHHHHHHHHHH
Confidence 2234788999999999887653
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.53 E-value=3 Score=37.17 Aligned_cols=77 Identities=26% Similarity=0.323 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHH----------HHhhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMH----------FQRTAGLEQEIEILKQKIAACARENSNLQE 83 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~----------~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQE 83 (376)
-|-.++..|+..|+.|.+|+-+|=-| |.-=.|.. --|..+|+.|++.++..+.....||..|||
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~------L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~E 125 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAI------LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQD 125 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578889999999999999776443 22222222 237889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 017151 84 ELSEAYRIKGQLA 96 (376)
Q Consensus 84 ELsEAYRiK~qLa 96 (376)
-++.-=.-|+-+.
T Consensus 126 kl~~lEKe~a~~e 138 (168)
T 3o0z_A 126 MLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9987655555443
No 12
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.30 E-value=13 Score=30.58 Aligned_cols=108 Identities=21% Similarity=0.296 Sum_probs=62.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHH
Q 017151 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAE 135 (376)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaE 135 (376)
-.+.++.+|..|+.++.........|.+.....--=|..|... +. ||+++. -++
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~q--------------L~----------~E~~~l-~e~- 67 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ--------------VQ----------AEQDNL-ADA- 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-HHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH----------HHHHHH-HhH-
Confidence 3456788888888887766666655555544433333333322 11 233331 122
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 017151 136 KAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (376)
Q Consensus 136 KaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~ 191 (376)
.++-+.+...-.+++..+.++++.+.+....|..|+..-.++..+...+.+-|+
T Consensus 68 --EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 68 --EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244445555556667777777777777777777777777766666665555444
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.28 E-value=6.4 Score=32.34 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccc
Q 017151 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSF 225 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSf 225 (376)
..+.++..++..++..+..++-+|..|...++..+.+-+.-.+-
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~------------------------------------ 81 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ------------------------------------ 81 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 45777888888888888888888888888887766655411111
Q ss_pred cCcchhHhHHHHHHHHHHHHhhHHHH
Q 017151 226 NDTSTSKYISALEDELEKTRSSVENL 251 (376)
Q Consensus 226 n~tStskyisaLEee~e~lr~si~~L 251 (376)
...-|+.||.++..+|..+...
T Consensus 82 ----~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 82 ----IQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Confidence 2234788999999999887653
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.99 E-value=10 Score=40.93 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=1.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHH
Q 017151 58 AGLEQEIEILKQKIAACARENSNLQEELSE 87 (376)
Q Consensus 58 A~LEQeIE~Lkkkl~~c~rEn~nLQEELsE 87 (376)
..||..|+.|+.+|..-..+|..|++++..
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~ 953 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953 (1080)
T ss_dssp ---------------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999999989999999988653
No 15
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=83.98 E-value=3.7 Score=33.91 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQ 39 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQ 39 (376)
....|..+|..|+.||+.|++.|+.|=|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999988774
No 16
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=83.28 E-value=9.9 Score=38.08 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=46.8
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHH
Q 017151 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRL 292 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~ 292 (376)
.++|-..++..++.|++.++.|-++-.-..++.++|+-.....+++---....|..--..|.+
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~ 153 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMEL 153 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 689999999999999999999998888888888888888777766544444333333333333
No 17
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=82.77 E-value=6.2 Score=30.56 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcc
Q 017151 13 EALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENSN 80 (376)
Q Consensus 13 esl~aRI~qLEhERDELrKDIEqL--------CMQQaGpgyl----~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~n 80 (376)
..+..+|.+|+.+..++..=++.| |.-.-||-|| +-|.-.+-.|...++.+|+.|.+++..+..+=..
T Consensus 23 ~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~ 102 (117)
T 2zqm_A 23 QLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKE 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655544444 7778888775 4577788999999999999999999888777777
Q ss_pred hHHHHHHHH
Q 017151 81 LQEELSEAY 89 (376)
Q Consensus 81 LQEELsEAY 89 (376)
|+..|-+.+
T Consensus 103 lk~~l~~~~ 111 (117)
T 2zqm_A 103 LTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
No 18
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=82.39 E-value=3.5 Score=32.33 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhh
Q 017151 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (376)
Q Consensus 188 kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQs 253 (376)
++=+.|..+|.-.+.+.+-+-..|.++|-. +..||..|+++...+...++.|+.
T Consensus 20 ~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~------------A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 20 ELKRSFFALRDQIPELENNEKAPKVVILKK------------ATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHTTCGGGTTCTTCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688999987776644445566666633 678999999999998888776553
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.31 E-value=39 Score=36.52 Aligned_cols=14 Identities=50% Similarity=0.835 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 017151 25 ERDELRKDIEQLCM 38 (376)
Q Consensus 25 ERDELrKDIEqLCM 38 (376)
|..+|++|++.|-.
T Consensus 961 e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 961 ETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.30 E-value=19 Score=29.41 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017151 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQ 112 (376)
Q Consensus 60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~Ekq 112 (376)
.+.+|+.|++++...+.+|..|+-|+..+...=..+-.-|..|+.+...+|.+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~d 70 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47789999999999999999998887765322222222244555555555543
No 21
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=80.75 E-value=28 Score=30.33 Aligned_cols=121 Identities=17% Similarity=0.279 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhHH
Q 017151 60 LEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKE 139 (376)
Q Consensus 60 LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAERD~slmEaEKaKE 139 (376)
+|.+++.-..++.....-...|.++|--+-+--..|----...-.+-...|.++++.+... -||| -
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kL-----------KEAE---~ 91 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKL-----------KEAE---T 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHH-----------HHHH---H
Confidence 8888888888888888888888888877664433343333444455566777777776543 2222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHh
Q 017151 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIR 197 (376)
Q Consensus 140 ~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR 197 (376)
+.+..-..++.++.-+..++-.+...|.-+..++.++..--.. +..+--+||.+-
T Consensus 92 RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~e---l~~~~~~~~~~~ 146 (155)
T 2efr_A 92 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDK---VEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccchHHHH
Confidence 2233334555555556666666666666666666665422211 223456777654
No 22
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=77.21 E-value=9.5 Score=29.15 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhcCCchH----HHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhc
Q 017151 12 SEALMARIQQLEHERDELRKDIEQL--------CMQQAGPSYL----AVATRMHFQRTAGLEQEIEILKQKIAACARENS 79 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqL--------CMQQaGpgyl----~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~ 79 (376)
...+...+++|+.+..++..=++.| |.-..||-|| +-|.-.+..|...++.+|+.|.+++..+..+=.
T Consensus 17 ~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~ 96 (107)
T 1fxk_A 17 AQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777666655433333 8888998875 457788899999999999999998887776666
Q ss_pred chHHHHH
Q 017151 80 NLQEELS 86 (376)
Q Consensus 80 nLQEELs 86 (376)
.|+..|-
T Consensus 97 ~lk~~l~ 103 (107)
T 1fxk_A 97 EMQVNIQ 103 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.26 E-value=1.5e+02 Score=36.21 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=18.1
Q ss_pred HHHhhHHHHHhhhhhHHHHHHHHH
Q 017151 46 LAVATRMHFQRTAGLEQEIEILKQ 69 (376)
Q Consensus 46 l~vATRM~~QRtA~LEQeIE~Lkk 69 (376)
|.....|+.++...++..++.|+.
T Consensus 1901 i~~y~~ll~~K~~el~~~~~rl~~ 1924 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQLHLNI 1924 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888887777774
No 24
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=76.25 E-value=43 Score=34.59 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh----------hHHHHHhhhhhhh
Q 017151 72 AACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQG----------CMAAAFAERDNSV 131 (376)
Q Consensus 72 ~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs----------~vA~AFAERD~sl 131 (376)
...-|++...+.||.+|- +. -.-++...-|-|+|||| .||.|.|++|+-.
T Consensus 317 ~~Aer~~e~a~ael~~a~-------k~---~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 317 EAAERNYERARAELNQAN-------ED---VARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhh
Confidence 445555555666666551 11 12233345688899999 9999999998643
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.70 E-value=18 Score=30.60 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=15.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENI 163 (376)
Q Consensus 132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~ 163 (376)
|+.|.++..-+..-.+++.++.++.++++.+.
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555554443
No 26
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=73.97 E-value=17 Score=27.79 Aligned_cols=84 Identities=8% Similarity=0.167 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhccccccc
Q 017151 143 LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEM 222 (376)
Q Consensus 143 ~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~ 222 (376)
.++.+|+.++.++..+.+.+...+ .++.. ...|++ +-..+..+.+|--++.+.
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~-------~~~~e-------~~~~~~----------EL~~l~~d~~vy~~iG~v--- 57 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVE-------MQINE-------TQKALE----------ELSRAADDAEVYKSSGNI--- 57 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHHHH----------HHHHSCTTCCEEEEETTE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHHHH----------HHHcCCCCchHHHHHhHH---
Confidence 466788888888887766554433 22211 112332 112222233443333322
Q ss_pred ccccCcchhHhHHHHHHHHHHHHhhHHHHhhhh
Q 017151 223 WSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 223 WSfn~tStskyisaLEee~e~lr~si~~LQskL 255 (376)
|-..+....+..|++.++.+...|+.|..++
T Consensus 58 --fv~~~~~e~~~~L~~~~e~i~~~i~~le~~~ 88 (107)
T 1fxk_A 58 --LIRVAKDELTEELQEKLETLQLREKTIERQE 88 (107)
T ss_dssp --EEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123566677777777777777776666554
No 27
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=72.70 E-value=12 Score=30.21 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHH--------hhhhhHHHHHHHHHHHHHhhhhhcchHH
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQ--------RTAGLEQEIEILKQKIAACARENSNLQE 83 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~Q--------RtA~LEQeIE~Lkkkl~~c~rEn~nLQE 83 (376)
+=++..|.+.|++..++|++||++-=-+.-| .++|+-- =...++++|..+.++|..+-.
T Consensus 10 ~LPpeqRkkkL~~Ki~el~~ei~ke~~~reg------l~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~------- 76 (98)
T 2ke4_A 10 HLPPEQQRKRLQQQLEERSRELQKEVDQREA------LKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKL------- 76 (98)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH------HHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHH-------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHH-------
Confidence 4467899999999999999999997655443 2333211 112235555555555443322
Q ss_pred HHHHHHHHHHHHHHH
Q 017151 84 ELSEAYRIKGQLADL 98 (376)
Q Consensus 84 ELsEAYRiK~qLadL 98 (376)
+.|++..+|+++
T Consensus 77 ---el~K~q~~L~e~ 88 (98)
T 2ke4_A 77 ---EVQKYEAWLAEA 88 (98)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
Confidence 446677777776
No 28
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=72.38 E-value=5.7 Score=30.08 Aligned_cols=52 Identities=12% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhh
Q 017151 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQS 253 (376)
Q Consensus 189 Vi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQs 253 (376)
+=..|.++|.-.+.+.+ +-..|.++|- .+..||..|++++..|...++.|+.
T Consensus 27 in~~f~~Lr~lvP~~~~-~k~sK~~iL~------------~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 27 IKDSFHSLRDSVPSLQG-EKASRAQILD------------KATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHSGGGTT-SCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCcCCCC-CCccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888876665532 1234555443 2789999999999999999988863
No 29
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=72.29 E-value=5.7 Score=30.54 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhh
Q 017151 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 189 Vi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL 255 (376)
+=+.|.++|.-.+.+ -+-.+|+++|-+ +-.||..|+.++..|....+.|+..+
T Consensus 21 in~~f~~L~~lvP~~--~~k~~Ka~IL~~------------Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 21 INDKIIELKDLVVGT--EAKLNKSAVLRK------------AIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHTCS--SCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC--CCCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677787555542 133456666533 77899999999999999888887644
No 30
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.55 E-value=1.2e+02 Score=37.02 Aligned_cols=95 Identities=6% Similarity=0.152 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccc--
Q 017151 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDS-- 219 (376)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds-- 219 (376)
.+.-+++++++.++.+|+....+...-...|+.+.+.-+...+...+.|...=.=+.|=.+. --++...-..|..|.
T Consensus 2031 ~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~-~~~l~~~~~~L~GD~LL 2109 (3245)
T 3vkg_A 2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ-SENFNTQMSTVVGDVVL 2109 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH-HHHHHHHHHhccHHHHH
Confidence 34445666666677666666666666666667666666666666666666433222221111 111223333444443
Q ss_pred -cccccccCcchhHhHHHH
Q 017151 220 -AEMWSFNDTSTSKYISAL 237 (376)
Q Consensus 220 -~~~WSfn~tStskyisaL 237 (376)
+--=||.|+=|..|=..|
T Consensus 2110 aaafisY~G~f~~~~R~~l 2128 (3245)
T 3vkg_A 2110 ASAFLAYIGFFDQNFRTDL 2128 (3245)
T ss_dssp HHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 223456677677775544
No 31
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=71.07 E-value=7.8 Score=29.37 Aligned_cols=53 Identities=11% Similarity=0.277 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhh
Q 017151 189 VINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSK 254 (376)
Q Consensus 189 Vi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQsk 254 (376)
+=+.|.++|.-.+.+.+ +-..|.++|- .+..||..|.+++..+...++.|...
T Consensus 17 in~~f~~Lr~lvP~~~~-~k~sK~~iL~------------~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 17 IKDSFHSLRDSVPSLQG-EKASRAQILD------------KATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHTTSGGGTT-SCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-CCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888876665532 1234555543 27789999999888888777766543
No 32
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=68.80 E-value=20 Score=27.79 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=27.7
Q ss_pred HHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 017151 37 CMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (376)
Q Consensus 37 CMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (376)
|.|.-.|.+..-.-.-+-.+...+..+|..|+.++..+.++-..|..++.
T Consensus 53 Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 53 CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433222234445566666677777777776666666655555
No 33
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.36 E-value=14 Score=31.19 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCchHHHhhHHHHHhhh--hhHHHHHHHHHHHHHhhhhhcch
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCM--QQAGPSYLAVATRMHFQRTA--GLEQEIEILKQKIAACARENSNL 81 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCM--QQaGpgyl~vATRM~~QRtA--~LEQeIE~Lkkkl~~c~rEn~nL 81 (376)
.+.-+..|..|..|...+++|+|++=| ||+- .| -...++.|++ .+..+++.|+.+|+.+.|.|..|
T Consensus 40 L~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~-IY---~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 40 LVAKQELIDKLKEEAEQHKIVMETVPVLKAQAD-IY---KADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 344566677788888888899998877 5653 23 3456777876 37888999999999888888765
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.74 E-value=19 Score=35.84 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=37.3
Q ss_pred HHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 249 ENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNS 304 (376)
Q Consensus 249 ~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~l 304 (376)
+.|..++...-..||-...-...||++++++..-|.+-|..|+-+-.-.|+...+|
T Consensus 95 ~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~ki 150 (390)
T 1deq_A 95 ELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDM 150 (390)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444455555666666666778999999999888888877766655544444443
No 35
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=66.82 E-value=24 Score=27.24 Aligned_cols=85 Identities=13% Similarity=0.215 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccc
Q 017151 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAE 221 (376)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~ 221 (376)
..++.+|+.++.++..+.+.+...+. ++.. ...|++ +-..+..+.+|-.++.+.
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~-------~~~e-------~~~~~~----------eL~~l~~d~~vy~~iG~v-- 62 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQL-------ELTE-------AKKALD----------EIESLPDDAVVYKTVGTL-- 62 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-------HHHHHH----------HHHTSCTTCCEEEEETTE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-------HHHHHH----------HHHcCCCCcHhHHHhhHH--
Confidence 34667788888887777666544332 2211 113333 112222333444444422
Q ss_pred cccccCcchhHhHHHHHHHHHHHHhhHHHHhhhh
Q 017151 222 MWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 222 ~WSfn~tStskyisaLEee~e~lr~si~~LQskL 255 (376)
|-..+....+..|++.++.+...|+.|..++
T Consensus 63 ---fv~~~~~ea~~~L~~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 63 ---IVKTTKDKAVAELKEKIETLEVRLNALERQE 93 (117)
T ss_dssp ---EEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223566777777777777777777766654
No 36
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=66.05 E-value=15 Score=26.74 Aligned_cols=40 Identities=30% Similarity=0.503 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhHHHHhhhhh-hhHHH---HHHhHHhHHHHHHh
Q 017151 236 ALEDELEKTRSSVENLQSKLR-MGLEI---ENHLKKSVRELEKK 275 (376)
Q Consensus 236 aLEee~e~lr~si~~LQskLR-~glEI---EnHLkk~~r~LEk~ 275 (376)
.|||-++.+.+++|.||.|+- .=-|. ...||.++-.||++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999873 32233 35788888888864
No 37
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=65.70 E-value=47 Score=27.71 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=51.2
Q ss_pred HhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 124 FAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 124 FAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
--|+-+-+-+.+-.|-+=|.|-..+++++...+|-.+.++.+|+..+.|+.++..++++..
T Consensus 22 DNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 22 DNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445567888888888888889999999999999999999999999999999888754
No 38
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=65.67 E-value=7 Score=30.11 Aligned_cols=32 Identities=34% Similarity=0.675 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcC
Q 017151 10 NESEALMARIQQLEHERD----ELRKDIEQLCMQQAG 42 (376)
Q Consensus 10 ~~~esl~aRI~qLEhERD----ELrKDIEqLCMQQaG 42 (376)
.+.+....++..||.||| .|| |||-||-+.-|
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLR-diE~l~q~~e~ 51 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLR-NIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHh
Confidence 356778899999999999 775 89999987554
No 39
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=64.89 E-value=3.6 Score=28.28 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhHHHHhhhh
Q 017151 234 ISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQskL 255 (376)
||.|||++..|.+-+.+||.++
T Consensus 1 isrlee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999888887654
No 40
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=62.73 E-value=6.8 Score=27.70 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.9
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhh
Q 017151 230 TSKYISALEDELEKTRSSVENLQSKLR 256 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskLR 256 (376)
+.+||..||..+..|...|..|++.|.
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999988663
No 41
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=61.94 E-value=25 Score=27.47 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH
Q 017151 63 EIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMA 121 (376)
Q Consensus 63 eIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA 121 (376)
||+.|+.|+...+.+|..|.-|+-.+.-.=..+-.-|..|+.+...+|.++.=+..-|=
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 47889999999999999988887764322111222255677777777766655544443
No 42
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=60.64 E-value=76 Score=26.78 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=24.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH
Q 017151 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL 98 (376)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL 98 (376)
|-.+||++++.|.+ .|++-+++|=.+|=.-...|+++
T Consensus 10 ~l~~Leae~q~L~~------~E~qry~~eka~AE~A~~~La~~ 46 (119)
T 3etw_A 10 ELQALDAEYQNLAN------QEEARFNEERAQADAARQALAQN 46 (119)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777776 56666666666666666666655
No 43
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=60.39 E-value=12 Score=28.98 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhh
Q 017151 188 EVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 188 kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL 255 (376)
++=+.|+.+|...|.+.+.+-..|-++|- ....||..|+++...+...++.|+...
T Consensus 15 ~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~------------kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 15 HLRLSLEKLKGLVPLGPDSSRHTTLSLLT------------KAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHSSCCCSSSCCCTTHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467999997666543322222333332 256899999999988888877776543
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=59.36 E-value=96 Score=27.50 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (376)
.+-.+|..|+|.|.+|.+.|+.| -...+++...++.++..+....++-..+..++.++
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~l-----------------e~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKA-----------------LNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665555433 33455666666666666666666666666666554
No 45
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=57.24 E-value=53 Score=26.48 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=36.6
Q ss_pred HHHHhhhhhhhHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 017151 121 AAAFAERDNSVMEAEKAKEKEE----LMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (376)
Q Consensus 121 A~AFAERD~slmEaEKaKE~Ee----~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~ 185 (376)
|-+|++-|-++.|.--|-+.|= .++.++..+..-.--.+|.+.+-+..|..|+.++..++++.+-
T Consensus 2 ~~~~~~~~~~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 2 AMAEAEAEVTLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777665555442 3334444444444445566666667788888998888888773
No 46
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.43 E-value=94 Score=25.91 Aligned_cols=63 Identities=25% Similarity=0.230 Sum_probs=32.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhh----hcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017151 53 HFQRTAGLEQEIEILKQKIAACARE----NSNLQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKF 115 (376)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rE----n~nLQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkF 115 (376)
+-.+.+.|..|.+.+|.|+....++ ...||.||....-.+..|..--+-==-+|-.+|.+-|-
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3445555666666666666666554 33366666665555554442111112345666655444
No 47
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=53.30 E-value=26 Score=27.77 Aligned_cols=41 Identities=29% Similarity=0.474 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhHHHHhhhhh-hhHHH---HHHhHHhHHHHHHhh
Q 017151 236 ALEDELEKTRSSVENLQSKLR-MGLEI---ENHLKKSVRELEKKI 276 (376)
Q Consensus 236 aLEee~e~lr~si~~LQskLR-~glEI---EnHLkk~~r~LEk~q 276 (376)
.||+-++.|.++++.||.|+- +=-|. .+.||.|+-.||++-
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFL 48 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999873 32233 356777777777743
No 48
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.29 E-value=27 Score=25.83 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 017151 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (376)
Q Consensus 153 ~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~ 191 (376)
.+..+++....+.+.-|+.|...+..++.++..++.+|-
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666777777777777777776666553
No 49
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.04 E-value=57 Score=27.49 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 017151 57 TAGLEQEIEILKQKIAACARENSNLQEELS 86 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (376)
...+.++++.|++++..+.+++..|+-+|-
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666555555543
No 50
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=52.65 E-value=55 Score=26.72 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=30.6
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhH
Q 017151 125 AERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (376)
Q Consensus 125 AERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl 176 (376)
.|||..+-.|=+++.--+..-.++.++..++.+.++.+.+..+.|..||++.
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~ 55 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKH 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 3555555444444433344446666677777776666666666666666654
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.74 E-value=38 Score=24.80 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHH
Q 017151 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (376)
Q Consensus 153 ~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi 190 (376)
.++.+++......+..|..|+.++..+.++...+..++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777788888888888888877666554
No 52
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=51.57 E-value=30 Score=34.98 Aligned_cols=112 Identities=13% Similarity=0.198 Sum_probs=78.6
Q ss_pred hhhhhcccccccccccCc------chhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHH
Q 017151 211 KCACLLLDSAEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFIS 284 (376)
Q Consensus 211 Kc~~Ll~ds~~~WSfn~t------StskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i~ 284 (376)
-..|+..| .++.+|+-| -.+||-......|..|++.|+.+-|.=.-..++-++||-..+.-++...=.|.++.
T Consensus 62 ~g~c~~~~-~~fG~yCPTtCglad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~ 140 (461)
T 3ghg_B 62 AGGCLHAD-PDLGVLCPTGCQLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVN 140 (461)
T ss_dssp CCCCBCSS-TTTCBCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCccccC-cccCCcCCCcchHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHH
Confidence 34444444 457888843 58999999999999999999999999999999999999888777765555455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHhhh
Q 017151 285 NAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT 323 (376)
Q Consensus 285 ngis~L~~~h~~~R~~Im~lL~e~~s~iks~v~~i~ekl 323 (376)
+-=+.|.+.|.....-+..-.+..=-.|.++++.+..||
T Consensus 141 ~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i 179 (461)
T 3ghg_B 141 EYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKI 179 (461)
T ss_dssp CHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHH
Confidence 555666666665553333333333345566666666666
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.31 E-value=35 Score=24.68 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHH
Q 017151 154 RLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 189 (376)
Q Consensus 154 R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kV 189 (376)
++.+++........-|..|+.++..+.+++..+..+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666777777777777777655544
No 54
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=51.19 E-value=41 Score=33.09 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhhccchhhhhHHHHHhhh-hc
Q 017151 293 CHSQLRVHVVNSLEEGRSHIKSISDVIEEKT-QH 325 (376)
Q Consensus 293 ~h~~~R~~Im~lL~e~~s~iks~v~~i~ekl-~~ 325 (376)
++---|..+-.||..+.+.+|..|-.|-++| .+
T Consensus 300 ~~K~vK~Nas~il~~~~~~~k~~v~~iN~~L~~L 333 (355)
T 3etv_A 300 FTKFVKNNASIILESLDSPLKNLVSVINNKLTRL 333 (355)
T ss_dssp HHHHHHHTHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 3444577778899999998999999999998 55
No 55
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=49.85 E-value=36 Score=25.30 Aligned_cols=39 Identities=23% Similarity=0.470 Sum_probs=33.6
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017151 268 SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLE 306 (376)
Q Consensus 268 ~~r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~lL~ 306 (376)
.+.+|+.+-+..|..|..-|.+|+.-|...|.-|...++
T Consensus 11 s~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 11 TVEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 345677777899999999999999999999999988776
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.21 E-value=33 Score=35.55 Aligned_cols=94 Identities=10% Similarity=0.118 Sum_probs=49.7
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhh----hhhHHHHHHhHHhHHHHHHhhhhhHHH--HHHHHH-HHHHHHHHHHHHH
Q 017151 229 STSKYISALEDELEKTRSSVENLQSKL----RMGLEIENHLKKSVRELEKKIIHSDKF--ISNAIA-ELRLCHSQLRVHV 301 (376)
Q Consensus 229 StskyisaLEee~e~lr~si~~LQskL----R~glEIEnHLkk~~r~LEk~q~~~d~~--i~ngis-~L~~~h~~~R~~I 301 (376)
|--.....|-+.--.+++.|.+|.++| +=--+|+++.+.....|.+++...... ..|-|+ +|++.|...+..|
T Consensus 47 SGCrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 47 SGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cccchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333333332 122456677666666666665544322 334555 7777777777777
Q ss_pred HHhhhhccchhhhhHHHHHhhh
Q 017151 302 VNSLEEGRSHIKSISDVIEEKT 323 (376)
Q Consensus 302 m~lL~e~~s~iks~v~~i~ekl 323 (376)
-+-| .--.-|.++|..+--||
T Consensus 127 dnQl-snIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 127 IEKV-QHIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHH
Confidence 7666 33344555555555555
No 57
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=48.76 E-value=1e+02 Score=24.53 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=34.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHH
Q 017151 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQ 179 (376)
Q Consensus 132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~ 179 (376)
-|++.....|+.....++.|.-.+-+.+......+-+-+--+..|.+|
T Consensus 46 ~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 46 AEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677788888889999999998887777766655555445555444
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.77 E-value=35 Score=35.40 Aligned_cols=99 Identities=15% Similarity=0.308 Sum_probs=65.2
Q ss_pred hhcccccchh--hhhcccccccccccCcchhHhHHHHHHHHHHH-----------HhhHHHHhhhhhhhHHHHHHhHHhH
Q 017151 203 VLETSWEDKC--ACLLLDSAEMWSFNDTSTSKYISALEDELEKT-----------RSSVENLQSKLRMGLEIENHLKKSV 269 (376)
Q Consensus 203 ~~~~s~~~Kc--~~Ll~ds~~~WSfn~tStskyisaLEee~e~l-----------r~si~~LQskLR~glEIEnHLkk~~ 269 (376)
|.|-.|-.|| +|-|-...+-+.-+ ..+.|..|-.+++.+ ++.++.|+.++...-+.+|....-.
T Consensus 36 CaDeDwGvkCPSGCrLQglLdkqErD---ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S 112 (562)
T 3ghg_A 36 CSDEDWNYKCPSGCRMKGLIDEVNQD---FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVS 112 (562)
T ss_dssp CCSSSBTTEEECHHHHHHHHHHHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTT
T ss_pred ccccccCCCCCcccchhhhHHhhcCc---HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 4566666777 34443333333222 445555555555443 4556778888888889999877777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 270 RELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNS 304 (376)
Q Consensus 270 r~LEk~q~~~d~~i~ngis~L~~~h~~~R~~Im~l 304 (376)
.+||++++++..=|.|-|+-|+-+-.-.|+..++|
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999988888877766665555555444
No 59
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=46.98 E-value=1.2e+02 Score=31.01 Aligned_cols=85 Identities=12% Similarity=0.313 Sum_probs=53.0
Q ss_pred ccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhh-------------------------hhhHHHHHHhHHhHHHHH
Q 017151 219 SAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKL-------------------------RMGLEIENHLKKSVRELE 273 (376)
Q Consensus 219 s~~~WSfn~tStskyisaLEee~e~lr~si~~LQskL-------------------------R~glEIEnHLkk~~r~LE 273 (376)
+++.|-.-=+|--.....|.+.-..++++|++|.++| ...-..||-...-...||
T Consensus 38 aDeDwGvkCPSGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe 117 (491)
T 1m1j_A 38 VDDDWGTKCPSGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELR 117 (491)
T ss_dssp CTTSTTTEECCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 5556666555555566666666666666666666554 333445555555566899
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 274 KKIIHSDKFISNAIAELRLCHSQLRVHVVN 303 (376)
Q Consensus 274 k~q~~~d~~i~ngis~L~~~h~~~R~~Im~ 303 (376)
+++++++.-|.+.|+.|+-+-.-.|+...+
T Consensus 118 ~ri~yIK~kVd~qi~~IrvLq~~l~~q~sk 147 (491)
T 1m1j_A 118 RRIVTLKQRVATQVNRIKALQNSIQEQVVE 147 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888776666555444444333
No 60
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=46.86 E-value=19 Score=24.42 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=17.4
Q ss_pred hcccccchhhhhcccccccccccCcchhH
Q 017151 204 LETSWEDKCACLLLDSAEMWSFNDTSTSK 232 (376)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tStsk 232 (376)
..+..+.=.-.+-+.+.++|+|+|.+.+.
T Consensus 32 lg~~~~~v~V~i~e~~~~~w~~gG~~~~~ 60 (64)
T 3abf_A 32 LGEPYEEVRVILYEVRRDQWAAGGVLFSD 60 (64)
T ss_dssp TTCCGGGEEEEEEEECGGGEEETTEEHHH
T ss_pred hCCCcccEEEEEEEcCHHHeeECCEEhHh
Confidence 34443333334445567899999987653
No 61
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.95 E-value=2.5e+02 Score=28.12 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
..+.+++.++.+++..-...+++-.+||..+.....+..
T Consensus 100 ~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~ 138 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRK 138 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccccccc
Confidence 445555555555544444444455555555555444443
No 62
>3ssb_C IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=44.69 E-value=7.4 Score=27.83 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.2
Q ss_pred cccccccccccccCCC
Q 017151 344 LDEFECRDVHINNDAD 359 (376)
Q Consensus 344 ~~e~ecrDvHvs~d~~ 359 (376)
-|+++|+|+|+-+...
T Consensus 20 ac~n~c~~~~~qn~t~ 35 (40)
T 3ssb_C 20 ACDNVCADLHIQNKTN 35 (40)
T ss_dssp SCCCBGGGTTTCCSSS
T ss_pred hHhhhhhhhhcccccC
Confidence 4899999999987653
No 63
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=44.64 E-value=1.9e+02 Score=26.68 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=42.6
Q ss_pred hHhHHHHHH-----------HHHHHHhhHHHHhhhhhh-----hHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHH
Q 017151 231 SKYISALED-----------ELEKTRSSVENLQSKLRM-----GLEIENHLKKSVRELEKKIIHSDKFISNAIAEL 290 (376)
Q Consensus 231 skyisaLEe-----------e~e~lr~si~~LQskLR~-----glEIEnHLkk~~r~LEk~q~~~d~~i~ngis~L 290 (376)
.||+..++. ++.+-..+..++|-|+|- +=.+--.|.+.+..+..++..++.|..+|+...
T Consensus 119 ~k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~~~~r~A 194 (253)
T 2d1l_A 119 KKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKA 194 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666654 333333445788888888 345556778888889999999999999987643
No 64
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.58 E-value=1e+02 Score=23.38 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEA 88 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (376)
++..++++|+.+-|...-..+++--+- +-.-+|...+|++|..|++|+..+--+=...++.|..|
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l----------~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADK----------KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888877777666654321 22235777888888888888866655555555555444
No 65
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.08 E-value=1e+02 Score=23.34 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=45.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 017151 132 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (376)
Q Consensus 132 mEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~ 185 (376)
.|++.|.++-+..-+++.+.+.|....+..+....+-+..|+.++...++....
T Consensus 13 ~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 13 LDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888889999999999999999999888888888888888877663
No 66
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=43.23 E-value=28 Score=23.65 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.4
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhh
Q 017151 230 TSKYISALEDELEKTRSSVENLQSK 254 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQsk 254 (376)
.+..+++||.|...|+++++.|-.|
T Consensus 4 lnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999988654
No 67
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=42.96 E-value=2.6e+02 Score=27.69 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=59.2
Q ss_pred cccccccCc------chhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHh-------------------HHHHHH
Q 017151 220 AEMWSFNDT------STSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKS-------------------VRELEK 274 (376)
Q Consensus 220 ~~~WSfn~t------StskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~-------------------~r~LEk 274 (376)
.++.+|+-| -.+||-......+..|+..|+.+-|.=.-..+.=++||-. -..||+
T Consensus 13 ~~fG~~CPTtCgl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~ 92 (411)
T 3ghg_C 13 ERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEE 92 (411)
T ss_dssp -CCSCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCCCcchHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHH
Confidence 356777733 5889988888888888888888877666666655555543 234555
Q ss_pred hhhhhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHhhh
Q 017151 275 KIIHSDKFI---SNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT 323 (376)
Q Consensus 275 ~q~~~d~~i---~ngis~L~~~h~~~R~~Im~lL~e~~s~iks~v~~i~ekl 323 (376)
+..+ +.++ ..-|..|+.-....+..| ..|+..|..++.+.
T Consensus 93 ~~~~-~~~~~~~~~~i~~l~~~~~~~~~~i--------~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 93 IMKY-EASILTHDSSIRYLQEIYNSNNQKI--------VNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTS
T ss_pred HHHH-HHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Confidence 5544 4444 445666666555554443 44555666666665
No 68
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.64 E-value=1.2e+02 Score=26.15 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=25.2
Q ss_pred HHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHH
Q 017151 120 MAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEE 181 (376)
Q Consensus 120 vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~e 181 (376)
.|.-|-|=.+-|-.|- .+-+.++.|.+.|+..+.+-..+=+.||.+|..|+-
T Consensus 80 TasLFeEAN~MVa~ar----------~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 80 TASLFDEANNLVADAR----------MEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444444432 234667788888888888887777788877776653
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.55 E-value=1.3e+02 Score=25.01 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhhhHHHHHhH
Q 017151 107 MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAK 138 (376)
Q Consensus 107 ~e~EkqVkFfQs~vA~AFAERD~slmEaEKaK 138 (376)
.+||.++.+.... ++.++.|++..+
T Consensus 50 ~~Le~eL~e~r~~-------~q~a~~e~e~Lr 74 (120)
T 3i00_A 50 SELEADLAEQQHL-------RQQAADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3445555555433 667777777665
No 70
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=41.32 E-value=84 Score=29.37 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=34.5
Q ss_pred hhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHH
Q 017151 230 TSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFI 283 (376)
Q Consensus 230 tskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~q~~~d~~i 283 (376)
..+|++.|+++++++.+.++++..+|.-.-.- .=.+++.+.++++....++-+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~~~~ 297 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEKRPEN-KKAHNKRDNLQQQLDANEQKI 297 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998877211000 012344555555555444433
No 71
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=40.44 E-value=57 Score=31.75 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccc
Q 017151 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMW 223 (376)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~W 223 (376)
|..++..+..|..+++..+.+..-.+|. ....++....-.+..+++.|-+++...-+..++ .-|+.|+.
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d~--~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~------~el~~D~e--- 69 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKDK--GRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQA------ESLLDDPE--- 69 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HTSTTCHH---
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcCHH---
Confidence 3456777888888888776554322321 111222222223446666666665433222111 00111332
Q ss_pred cccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 017151 224 SFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGL 259 (376)
Q Consensus 224 Sfn~tStskyisaLEee~e~lr~si~~LQskLR~gl 259 (376)
...-.++|+..+...++.|...|+.-|
T Consensus 70 ---------~~~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 70 ---------LKEMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678899999999999888776554
No 72
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=40.09 E-value=17 Score=25.89 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=20.8
Q ss_pred cchhHhHHHHHHHHHHHHhhHHHHhh
Q 017151 228 TSTSKYISALEDELEKTRSSVENLQS 253 (376)
Q Consensus 228 tStskyisaLEee~e~lr~si~~LQs 253 (376)
+....||+.||.+++.|...|..|.+
T Consensus 45 ~~~~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 45 TYKRARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999998887654
No 73
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=39.79 E-value=1.4e+02 Score=23.69 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------------cCCch-----HHHhhHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQ------------------------------AGPSY-----LAVATRMHFQ 55 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQ------------------------------aGpgy-----l~vATRM~~Q 55 (376)
..+.+..++.+|+....++.+=++.|=.=. -|.|| +.=|...+-.
T Consensus 16 ~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ 95 (133)
T 1fxk_C 16 QVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKS 95 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHH
Confidence 356788888888888888877777665422 23344 2346778888
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Q 017151 56 RTAGLEQEIEILKQKIAACARENSNLQEELSEAY 89 (376)
Q Consensus 56 RtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAY 89 (376)
|...|+..+++|++.+......-..+++.|.+.+
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888777777777777777665
No 74
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.54 E-value=29 Score=25.23 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHH
Q 017151 153 TRLEELSSENIELKKQNATLRFDLEKQEELNESFKEV 189 (376)
Q Consensus 153 ~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kV 189 (376)
.++.+++.........|..|..++..+.+++..+..+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666667777777777777776655443
No 75
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=39.49 E-value=94 Score=26.61 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchh
Q 017151 143 LMSQKFNEFQTRLEELSSENIELKKQNA----------TLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKC 212 (376)
Q Consensus 143 ~m~qk~~e~e~R~~E~~s~~~~qk~~n~----------~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc 212 (376)
..-+++++.+..+.+|++.+.+++.-+. .+|.+|..-++..+ ++
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe---~l----------------------- 63 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLS---KL----------------------- 63 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHH---HH-----------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHH---HH-----------------------
Confidence 3457888999999999888888776554 26666665555554 22
Q ss_pred hhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhh-----hhHHHHHHhHHhHHHHHHhhhhhHHH
Q 017151 213 ACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLR-----MGLEIENHLKKSVRELEKKIIHSDKF 282 (376)
Q Consensus 213 ~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR-----~glEIEnHLkk~~r~LEk~q~~~d~~ 282 (376)
.-.++=|+.|+.++-.+...++++++ +| +-=-|++-|...--+|+|.|+=.|+.
T Consensus 64 ---------------eeL~~ki~eL~~kvA~le~e~~~~e~-~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 64 ---------------EELSDKIDELDAEIAKLEDQLKAAEE-NNNVEDYFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHhHHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00455566677777666666666665 33 01235777876667888888877654
No 76
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=39.40 E-value=82 Score=26.26 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHH
Q 017151 17 ARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELS 86 (376)
Q Consensus 17 aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELs 86 (376)
.-|.+|.+|-+.|+..+|.+ ++-+.|. .+.| --|...||.|++.-+....-..-||..|..|+.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l-~~E~q~~----v~ql-~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM-KTESQRV----VLQL-KGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999998 4444432 2222 346677888777776544344444554444444
No 77
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.00 E-value=1.2e+02 Score=23.27 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=17.0
Q ss_pred hHhHHHHHHHHHHHHhhHHHHhhhhh
Q 017151 231 SKYISALEDELEKTRSSVENLQSKLR 256 (376)
Q Consensus 231 skyisaLEee~e~lr~si~~LQskLR 256 (376)
...|+..+.++..+++.+..|...+.
T Consensus 63 ~~~i~~~~~~l~~l~~~i~~l~~~i~ 88 (112)
T 1l8d_A 63 EELLSKYHLDLNNSKNTLAKLIDRKS 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766665543
No 78
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=37.18 E-value=3.3e+02 Score=27.18 Aligned_cols=120 Identities=8% Similarity=0.177 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHhhhhHHHHHhh
Q 017151 58 AGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLHAAEVIK-----------NMEAEKQVKFFQGCMAAAFAE 126 (376)
Q Consensus 58 A~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh~ae~~K-----------N~e~EkqVkFfQs~vA~AFAE 126 (376)
..+...|+.|+..|....+-+ .+.|..=..+-++++.-+.. +.+||++..+.|-.|-.-|.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~-------~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~- 134 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNS-------KDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ- 134 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 455556666666655443332 23344444444444422222 34788888888888877776
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 017151 127 RDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (376)
Q Consensus 127 RD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~ 191 (376)
+-.+++. .=+...-+++.+|.-++--..-|..-=..+.+++.|+..++.|..-+..||.
T Consensus 135 -~ir~Lq~-----~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a 193 (390)
T 1deq_A 135 -RINLLQK-----NVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIA 193 (390)
T ss_pred -HHHHHHH-----HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhh
Confidence 3333331 1111222333333333222222222223456777888888888777767766
No 79
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=36.95 E-value=1.3e+02 Score=30.52 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=36.8
Q ss_pred HHhhhh--HHHHHhhhhhhhHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 114 KFFQGC--MAAAFAERDNSVMEAEKAKEKEE----LMSQKFNEFQTRLEELSSENIELKK 167 (376)
Q Consensus 114 kFfQs~--vA~AFAERD~slmEaEKaKE~Ee----~m~qk~~e~e~R~~E~~s~~~~qk~ 167 (376)
.|+++. ++.+|---|.+|.+.||+.+.|. ++-++-..++++.++++..|+.|++
T Consensus 463 ~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~ 522 (592)
T 1f5n_A 463 TYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKER 522 (592)
T ss_dssp HHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466654 56788888999988887765543 3555666666676777777766654
No 80
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.83 E-value=1.2e+02 Score=22.28 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHH
Q 017151 152 QTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKF 193 (376)
Q Consensus 152 e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KF 193 (376)
+.|+.+++..+......|..|-.-|..-..+...+...|+++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777778777777777777777777777654
No 81
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=34.87 E-value=2.3e+02 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLC 37 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLC 37 (376)
.-+.+.+|...+|..-..|.||+...+
T Consensus 34 ~Fe~~e~rF~~le~~~~kL~k~~k~y~ 60 (237)
T 4avm_A 34 RFEQSASNFYQQQAEGHKLYKDLKNFL 60 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999998543
No 82
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=34.70 E-value=46 Score=24.60 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQL 36 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqL 36 (376)
-+..|..||++|++-++++...||.|
T Consensus 12 ~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 12 INIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 36778889999988877766666554
No 83
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.87 E-value=35 Score=24.97 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhh
Q 017151 233 YISALEDELEKTRSSVENLQSKLR 256 (376)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR 256 (376)
-+++||.|+..+..++..|.|||.
T Consensus 21 elaaleselqalekklaalksklq 44 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999875
No 84
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=33.64 E-value=1.7e+02 Score=22.88 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=36.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 017151 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (376)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~ 185 (376)
|++.|.++-+..-+++...+.|....+..+...++-+..|+.++....++...
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555557777888887777777777777777777777666665553
No 85
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.00 E-value=1.3e+02 Score=29.32 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQL 36 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqL 36 (376)
.+..++.+|+++|+.+.|.|-++
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888888888764
No 86
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=32.81 E-value=1.2e+02 Score=27.44 Aligned_cols=67 Identities=15% Similarity=0.310 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--chHHH----------------hhHHHHHhhhhhHHHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQLCMQQAG-P--SYLAV----------------ATRMHFQRTAGLEQEIEILKQKI 71 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqLCMQQaG-p--gyl~v----------------ATRM~~QRtA~LEQeIE~Lkkkl 71 (376)
..+.|..++...-..-....+.|-+||..++| | .|+.. +.++|+.....+..+|..++.+|
T Consensus 156 ~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~fi~~f~g~e~~~~w~~~~~~~~~~~~~~l~~~~~~i~~~q~kl 235 (339)
T 1sig_A 156 QFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKL 235 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHTTTCSSGGGTHHHHTTCSHHHHHGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCcHHHHHHHhhccchHHHHHHHhHHHHHHHHHHH
Confidence 45667777777777778888999999988888 2 23332 34578888888888888888887
Q ss_pred HHhhhh
Q 017151 72 AACARE 77 (376)
Q Consensus 72 ~~c~rE 77 (376)
...-.+
T Consensus 236 ~~ie~~ 241 (339)
T 1sig_A 236 QQIEEE 241 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 87
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=32.37 E-value=2e+02 Score=23.34 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 145 SQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 145 ~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
..++.++++|+++.+..+.....-...|+.+...++.+.+
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666666666554
No 88
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.34 E-value=1.9e+02 Score=22.90 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhh
Q 017151 147 KFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQ 198 (376)
Q Consensus 147 k~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~ 198 (376)
.=.+++.|++.++..+.+-+.--..++.++..+.++.. .=|...-++|+
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld---~KI~eL~elRq 69 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD---VSLFELSELRE 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHH
Confidence 33456677777777777777666777777777766666 66666666774
No 89
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.53 E-value=41 Score=24.33 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHhhHHHHhhhhh
Q 017151 233 YISALEDELEKTRSSVENLQSKLR 256 (376)
Q Consensus 233 yisaLEee~e~lr~si~~LQskLR 256 (376)
=|...-.|.++++++|..||++|+
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999886
No 90
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=31.30 E-value=24 Score=28.86 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhhhhhhcc-cccchhhhhcccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHH-HHhH
Q 017151 189 VINKFYEIRQQSLEVLET-SWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIE-NHLK 266 (376)
Q Consensus 189 Vi~KFyeiR~~~~e~~~~-s~~~Kc~~Ll~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIE-nHLk 266 (376)
+=++|.++|.-.+.|... .--+|.+||-. +..||..|..++..+......+ + -|+-+ ..|.
T Consensus 42 In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~------------aieYIk~Lq~~~~~l~~~~~~~----~-~l~~~n~~L~ 104 (118)
T 4ati_A 42 INDRIKELGTLIPKSNDPDMRWNKGTILKA------------SVDYIRKLQREQQRAKDLENRQ----K-KLEHANRHLL 104 (118)
T ss_dssp HHHHHHHHHHHSCCC----CCCCHHHHHHH------------HHHHHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHHHhhccCccccCCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHH
Confidence 335688888777766321 12346655532 7899999999998887643221 1 12222 3577
Q ss_pred HhHHHHHH
Q 017151 267 KSVRELEK 274 (376)
Q Consensus 267 k~~r~LEk 274 (376)
.++.+||.
T Consensus 105 ~riqeLE~ 112 (118)
T 4ati_A 105 LRVQELEM 112 (118)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 77888876
No 91
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=30.80 E-value=1.9e+02 Score=23.19 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHhhhHHHHHHhhHhHHHHHHHHHHHhhh
Q 017151 144 MSQKFNEFQTRLEELSSENIELKKQN--------ATLRFDLEKQEELNESFKEVINKFYEIRQQ 199 (376)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qk~~n--------~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~ 199 (376)
+.+.+++|+.|+..|...+++.++.= -..|.=...+..+.++|.-+-.+...|-.+
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~ 73 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHEN 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888887765441 123444566777788888877777776543
No 92
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.59 E-value=2.8e+02 Score=27.19 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=35.8
Q ss_pred ccccccC------cchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhH
Q 017151 221 EMWSFND------TSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLK 266 (376)
Q Consensus 221 ~~WSfn~------tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLk 266 (376)
++.+++- +.++||-..+...+..|.+.++.++|.-.-..++=+++|
T Consensus 14 ~~G~~CPT~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq 65 (409)
T 1m1j_C 14 RFGSYCPTTCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIK 65 (409)
T ss_dssp GGCCEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCCCcccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677773 369999999999999999999999888776665555554
No 93
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.05 E-value=1.8e+02 Score=23.60 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=19.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH
Q 017151 51 RMHFQRTAGLEQEIEILKQKIA 72 (376)
Q Consensus 51 RM~~QRtA~LEQeIE~Lkkkl~ 72 (376)
|.+.+|.-+.|+|++.|+.++.
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~~ 28 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKVL 28 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 6788999999999999999653
No 94
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.99 E-value=1.2e+02 Score=24.14 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHH
Q 017151 148 FNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (376)
Q Consensus 148 ~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi 190 (376)
-.+++.|+.+|+. -|..|+.++..|+.+...+..++
T Consensus 38 ~~e~~~r~~~Le~-------EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 38 NLETQHKVLELTA-------ENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556665554 45566666666666666444443
No 95
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.87 E-value=1.2e+02 Score=23.70 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhH
Q 017151 146 QKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl 176 (376)
++..+++.|+.+|+.....++..-..|..++
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666655444444444444443
No 96
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.82 E-value=2.1e+02 Score=22.65 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhh
Q 017151 232 KYISALEDELEKTRSSVENLQSKLR 256 (376)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskLR 256 (376)
+=|..||++++.+...+...+.+|.
T Consensus 51 kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 51 KQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555554444444444
No 97
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=29.24 E-value=57 Score=26.30 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 017151 12 SEALMARIQQLEHERDELRKDIEQLCMQQAGP 43 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqLCMQQaGp 43 (376)
.++|.++|..|+.+++.|.+.|.++=-+=+.|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 57899999999999999999999986554444
No 98
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=29.15 E-value=2.7e+02 Score=23.80 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=30.1
Q ss_pred HHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHHh-hhhhHHHHHHHHHHHHHHHH
Q 017151 240 ELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKK-IIHSDKFISNAIAELRLCHS 295 (376)
Q Consensus 240 e~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk~-q~~~d~~i~ngis~L~~~h~ 295 (376)
++++.+.+....+.++ -+-++..+..|..+... ..+|..-+...+..|+.+..
T Consensus 173 ~~eK~~~k~~~~~~~~---~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~ 226 (305)
T 2efl_A 173 DVEKARQQAQIRHQMA---EDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEE 226 (305)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444333333 24456666667777775 56677777777766665443
No 99
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.07 E-value=2.1e+02 Score=22.57 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=33.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHh
Q 017151 133 EAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNES 185 (376)
Q Consensus 133 EaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~ 185 (376)
|++.|.++-+..-+++...+.|....+..+....+-+..|..++....++...
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555557777777777777777777666666666666666555553
No 100
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=28.35 E-value=61 Score=21.65 Aligned_cols=28 Identities=11% Similarity=-0.014 Sum_probs=17.0
Q ss_pred hcccccchhhhhcccccccccccCcchh
Q 017151 204 LETSWEDKCACLLLDSAEMWSFNDTSTS 231 (376)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tSts 231 (376)
..+..++=.-.+-+-+.++|+|+|.+.+
T Consensus 31 lg~~~~~v~V~i~e~~~~~w~~gG~~~~ 58 (61)
T 2opa_A 31 TGASEEKIVVFIEEMRKDHYAVAGKRLS 58 (61)
T ss_dssp HCCCGGGCEEEEEEECGGGCEETTEEGG
T ss_pred hCcCcCeEEEEEEEcCHHHeeECCEEhh
Confidence 3444444333444456789999997654
No 101
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.68 E-value=2e+02 Score=21.89 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHh
Q 017151 16 MARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAAC 74 (376)
Q Consensus 16 ~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c 74 (376)
.+.+.+|+.+-..|...|..|=-+=|-|+|.+- -+.+++.|-++++.++..|..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~----d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQ----PHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666566678886321 1234444545455555444433
No 102
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.26 E-value=2.1e+02 Score=28.63 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQL 36 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqL 36 (376)
.+..++++|+.+|+++.|.|-++
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777665
No 103
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=27.16 E-value=2.3e+02 Score=22.21 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhc
Q 017151 137 AKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLL 216 (376)
Q Consensus 137 aKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll 216 (376)
++..++.....+.....++..++..+......-......+.......-+.....+
T Consensus 17 ~~~~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~~~~~~~~~g~~~~~l~~------------------------- 71 (150)
T 3ajw_A 17 AEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGNGIASNRWIN------------------------- 71 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSGGGHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-------------------------
Q ss_pred ccccccccccCcchhHhHHHHHHHHHHHHhhHHHHhhhhhhhHHHHHHhHHhHHHHHH
Q 017151 217 LDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEK 274 (376)
Q Consensus 217 ~ds~~~WSfn~tStskyisaLEee~e~lr~si~~LQskLR~glEIEnHLkk~~r~LEk 274 (376)
...||..|+..++..+..|..++..+.-.-+.=..-.+.+..+|+
T Consensus 72 -------------~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~ 116 (150)
T 3ajw_A 72 -------------YQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT 116 (150)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 104
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.12 E-value=52 Score=22.55 Aligned_cols=20 Identities=50% Similarity=0.511 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHhhh
Q 017151 57 TAGLEQEIEILKQKIAACAR 76 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~r 76 (376)
+|+|.|||-.|||.+++.--
T Consensus 4 iaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788888888887766543
No 105
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.94 E-value=1.2e+02 Score=23.32 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 017151 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNE 184 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e 184 (376)
+.+.+++.++.+|+........-|..|+.++..+...+.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666555555556666666655555443
No 106
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=26.91 E-value=56 Score=21.82 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=18.5
Q ss_pred hcccccchhhhhcccccccccccCcchh
Q 017151 204 LETSWEDKCACLLLDSAEMWSFNDTSTS 231 (376)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tSts 231 (376)
..+..++-.-++-+-+.++|+|+|.+.+
T Consensus 31 lg~p~~~v~v~i~e~~~~~w~~~G~~~~ 58 (62)
T 1otf_A 31 LDAPLERVRVLITEMPKNHFGIGGEPAS 58 (62)
T ss_dssp HTCCGGGCEEEEEEECGGGEEETTEETT
T ss_pred hCcCcccEEEEEEEeCHHHeEECCEEHH
Confidence 4555555444555567789999997654
No 107
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=26.70 E-value=30 Score=28.26 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=15.4
Q ss_pred HhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCc
Q 017151 181 ELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDT 228 (376)
Q Consensus 181 eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~t 228 (376)
+|+..+.+.|-.|++-. ..+..++=--.+-+-+.++|.|||+
T Consensus 92 e~n~~~s~~i~~~l~~~------Lgi~~~riyI~f~d~~~~~wg~nG~ 133 (135)
T 3t5s_A 92 AKNPSISAAITGCLTQH------FKVKPERVYISFNEAKGHNWGFNGS 133 (135)
T ss_dssp -CCHHHHHHHHHHHHHH------HCCCGGGEEEEEEC-----------
T ss_pred cCCchHHHHHHHHHHHh------cccCccEEEEEeccccCcccccCCC
Confidence 45554445554444332 6666655444555667889999986
No 108
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=26.56 E-value=53 Score=24.94 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=16.8
Q ss_pred hcccccchhhhhcccccccccccCcc
Q 017151 204 LETSWEDKCACLLLDSAEMWSFNDTS 229 (376)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tS 229 (376)
..+..++=--.+-+-+.++|+|||+.
T Consensus 87 lgi~~~~v~I~~~e~~~~~wg~~G~t 112 (113)
T 1hfo_A 87 LGIPKNRMYIHFVNLNGDDVGWNGTT 112 (113)
T ss_dssp HCCCGGGEEEEEEECCGGGEEETTEE
T ss_pred hCcCcCeEEEEEEECCHHHeeeCCEe
Confidence 45555543334455677899999964
No 109
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=26.55 E-value=1.9e+02 Score=30.38 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch----HHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHH
Q 017151 9 ENESEALMARIQQLEHERDELRKDIEQLCMQQAGPSY----LAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEE 84 (376)
Q Consensus 9 ~~~~esl~aRI~qLEhERDELrKDIEqLCMQQaGpgy----l~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEE 84 (376)
.+|...+..+|.+++.|||+|.+-|...=-=+++-|- ..+++-=....+.+|+- ++.|+.|-|. +-.=.+
T Consensus 9 i~dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~~l~~~yg~-----l~il~~ 82 (706)
T 3fhn_A 9 IDDLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGASVEG-LEQLRAKYGD-----LQILNK 82 (706)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHSCSSHHH-HHHHHHTTCC-----CHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccccHHH-HHHHHHHcCC-----cHHHHH
Confidence 4677888999999999999999999765431222221 22333333334455655 7778876653 223344
Q ss_pred HHHHHHHHHH
Q 017151 85 LSEAYRIKGQ 94 (376)
Q Consensus 85 LsEAYRiK~q 94 (376)
|-..|+-|..
T Consensus 83 l~~~~~~~~~ 92 (706)
T 3fhn_A 83 LEKVAVQQTQ 92 (706)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 110
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=26.39 E-value=46 Score=22.75 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 10 NESEALMARIQQLEHERDELRKDIEQL 36 (376)
Q Consensus 10 ~~~esl~aRI~qLEhERDELrKDIEqL 36 (376)
+..+++..+|++|+.+-|.+.-.++++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~ 30 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARL 30 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999888765
No 111
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=26.36 E-value=61 Score=25.02 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=17.2
Q ss_pred hcccccchhhhhcccccccccccCcch
Q 017151 204 LETSWEDKCACLLLDSAEMWSFNDTST 230 (376)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tSt 230 (376)
..+..++=--.+-+-+.++|+|||...
T Consensus 88 lgi~~~~v~I~~~e~~~~~wg~~G~~~ 114 (119)
T 2os5_A 88 LKLPKDKVIITYFDLQPIHVGFNGTTV 114 (119)
T ss_dssp HCCCGGGEEEEEEECCGGGCEETTEEH
T ss_pred hCcCcccEEEEEEECCHHHeeECCEEh
Confidence 455555433344556778999998754
No 112
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.12 E-value=3.1e+02 Score=23.44 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHH
Q 017151 142 ELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVIN 191 (376)
Q Consensus 142 e~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~ 191 (376)
+.....++++.+|++ ..+++.+.+-..|..=..-++++..-..++.+
T Consensus 78 eeA~~~L~eYn~rL~---~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~le 124 (152)
T 4fla_A 78 DEACLLLAEYNGRLA---AELEDRRQLARMLVEYTQNQKDVLSEKEKKLE 124 (152)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555554 45666666666555555555555444444443
No 113
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=25.94 E-value=54 Score=25.01 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=16.9
Q ss_pred hcccccchhhhhcccccccccccCcc
Q 017151 204 LETSWEDKCACLLLDSAEMWSFNDTS 229 (376)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tS 229 (376)
..+..++=--.+-+-+.++|+|||+.
T Consensus 88 lgi~~~~v~I~~~e~~~~~wg~~G~t 113 (115)
T 1uiz_A 88 LNIPANRVYINYYDLNAANVGWNGST 113 (115)
T ss_dssp HCCCGGGEEEEEEECCGGGEEETTEE
T ss_pred hCcCcceEEEEEEECCHHHeeeCCEE
Confidence 45555543344455677899999864
No 114
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.92 E-value=2e+02 Score=22.58 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhH
Q 017151 149 NEFQTRLEELSSENIELKKQNATLRFDL 176 (376)
Q Consensus 149 ~e~e~R~~E~~s~~~~qk~~n~~Lq~dl 176 (376)
..-+.|++++++.+.+.......||.+|
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555444444444443
No 115
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=25.83 E-value=5.4e+02 Score=26.16 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=33.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHH
Q 017151 53 HFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLAD 97 (376)
Q Consensus 53 ~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLad 97 (376)
.+.|.+.|++++..++.++.+..+.+.+-...+.+.-.+|..+.+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (854)
T 1qvr_A 428 SQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDE 472 (854)
T ss_dssp HHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999998887776655555555555555544
No 116
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=25.69 E-value=39 Score=27.49 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=23.4
Q ss_pred HhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCc
Q 017151 181 ELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDT 228 (376)
Q Consensus 181 eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~t 228 (376)
++++.+-+.|-.|++-. ..+.. +..-|-+.|. ++|+|||+
T Consensus 92 e~n~~~s~~i~~~l~~~------LgI~~-~riyI~f~d~-~~wG~nG~ 131 (133)
T 3fwu_A 92 SEPEKVTSIVTAAITKE------CGIVA-DRIFVLYFSP-LHCGWNGT 131 (133)
T ss_dssp THHHHHHHHHHHHHHHH------HCCCG-GGEEEEEECC-SCCEETTE
T ss_pred HHHHHHHHHHHHHHHHH------hCcCh-hhEEEEEEEH-HHEeeCcE
Confidence 34454444444443322 55555 3456667777 99999986
No 117
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.23 E-value=87 Score=23.23 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhh
Q 017151 152 QTRLEELSSENIELKKQNATLRFDLEKQEELN 183 (376)
Q Consensus 152 e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~ 183 (376)
..++.+|+......+.-|..|..++..++++.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677777777777776653
No 118
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.17 E-value=41 Score=22.38 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhHHHHhhhh
Q 017151 234 ISALEDELEKTRSSVENLQSKL 255 (376)
Q Consensus 234 isaLEee~e~lr~si~~LQskL 255 (376)
|.+||=|++.|..+|..|..|+
T Consensus 2 idalefendaleqkiaalkqki 23 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHH
Confidence 5677777777777777766554
No 119
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=24.49 E-value=48 Score=26.89 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=24.0
Q ss_pred HhhHhHHHHHHHHHHHhhhhhhhhcccccchhhhhcccccccccccCc
Q 017151 181 ELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDT 228 (376)
Q Consensus 181 eq~e~~~kVi~KFyeiR~~~~e~~~~s~~~Kc~~Ll~ds~~~WSfn~t 228 (376)
++++.+-+.|-.|++-. ..+..+ ..-|.+.|.. +|.|||+
T Consensus 92 e~n~~~s~~i~~~l~~~------LgI~~~-rvyI~f~d~~-~wg~nG~ 131 (133)
T 3fwt_A 92 SKPKMMTPRIAAAITKE------CGIPAE-RIYVFYYSTK-HCGWNGT 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHH------HCCCGG-GEEEEEEEES-CCEETTE
T ss_pred HHHHHHHHHHHHHHHHH------hCcChh-hEEEEEEEhh-hEeECCE
Confidence 45554444444444322 555554 3666777777 9999986
No 120
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.40 E-value=2.1e+02 Score=22.92 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=48.0
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHH---HH--HHHH-hhHHHHHHHHHhhhhHHHH
Q 017151 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADL---HA--AEVI-KNMEAEKQVKFFQGCMAAA 123 (376)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadL---h~--ae~~-KN~e~EkqVkFfQs~vA~A 123 (376)
||...|.+.|..|++.+.--++...+|. -+..+|.=..++.|- .+ +|.. +-.-|.-.+..||+..|.+
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~-Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALK-KMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHH-HHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999998888888888874 578888877777533 11 2222 2334566677777776655
No 121
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.20 E-value=66 Score=21.25 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhHHHHhhhhhhh
Q 017151 236 ALEDELEKTRSSVENLQSKLRMG 258 (376)
Q Consensus 236 aLEee~e~lr~si~~LQskLR~g 258 (376)
.|=.|++.|...+.+|..|||-|
T Consensus 5 elykeledlqerlrklrkklrsg 27 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLRSG 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 34467777777777888888765
No 122
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=24.12 E-value=70 Score=29.88 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhhhhHHHHHhhh
Q 017151 289 ELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKT 323 (376)
Q Consensus 289 ~L~~~h~~~R~~Im~lL~e~~s~iks~v~~i~ekl 323 (376)
-+-.++.-|.+.||.+++.+...+++|+..|+.+-
T Consensus 274 ~~sg~~g~H~~~i~~~~~~~~~s~~~i~~~~~~~~ 308 (320)
T 3dxi_A 274 MLSGANNIPQKEVMDWVTNRVYSFNSIIRALDNRK 308 (320)
T ss_dssp HHHHHTTCCHHHHHHHHC---CCHHHHHHTC----
T ss_pred HHHhccCCCHHHHHHHHhcCCCCHHHHHHHHHhhh
Confidence 35566777889999999999999999999998765
No 123
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=23.69 E-value=34 Score=32.27 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=24.1
Q ss_pred HhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHH
Q 017151 55 QRTAGLEQEIEILKQKIAACARENSNLQEELSEAYRIKGQLADLH 99 (376)
Q Consensus 55 QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYRiK~qLadLh 99 (376)
.+...++++|..|++++..- +....-.-.++.++.+++
T Consensus 226 k~~~~~~~ei~~l~~~i~~~-------~~l~~~l~~~~~~~~~l~ 263 (346)
T 2nrj_A 226 DNLGKLEPLLAELRQTVDYK-------VTLNRVVGVAYSNINEMH 263 (346)
T ss_dssp GGHHHHHHHHHHHHSCCCHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 67778888888888766322 223344445667777764
No 124
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.54 E-value=1.6e+02 Score=21.33 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhh
Q 017151 232 KYISALEDELEKTRSSVENLQSKLR 256 (376)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskLR 256 (376)
-|++.||.....+..+.+.|.+++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999998888888888777654
No 125
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.41 E-value=1.6e+02 Score=23.43 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 017151 135 EKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLR 173 (376)
Q Consensus 135 EKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq 173 (376)
+|.|.++..+.+++.+++.-=..|...+..++.-...|.
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665555444444443
No 126
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.33 E-value=71 Score=23.26 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhcchHHHH
Q 017151 57 TAGLEQEIEILKQKIAACARENSNLQEEL 85 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~rEn~nLQEEL 85 (376)
..+|.+|.+.||.|......++..|...|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 127
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=22.71 E-value=33 Score=26.84 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHHhhHHHHhhhhhhhH
Q 017151 232 KYISALEDELEKTRSSVENLQSKLRMGL 259 (376)
Q Consensus 232 kyisaLEee~e~lr~si~~LQskLR~gl 259 (376)
-|-.|.+==+++=++|++.||-+||+|+
T Consensus 11 Ly~~A~~~V~~~~~aS~S~lQR~lrIGY 38 (73)
T 2ve8_A 11 LYDEAVRFVTESRRASISAVQRKLKIGY 38 (73)
T ss_dssp THHHHHHHHHHHCCCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHccCh
Confidence 4666777677788999999999999995
No 128
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.62 E-value=3.6e+02 Score=22.99 Aligned_cols=74 Identities=11% Similarity=0.187 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
...+.|..|=+--=.-.||||.|.-.==|++ +..--..+|.+.|+.|.+...+.+....++...|-+.+-++++
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~---~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVD---VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333333589999986555544 4566778899999999988888877777777777776666654
No 129
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.49 E-value=1e+02 Score=22.36 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 12 SEALMARIQQLEHERDELRKDIEQL 36 (376)
Q Consensus 12 ~esl~aRI~qLEhERDELrKDIEqL 36 (376)
...|..++..|+.+.++|...|.+|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777666655
No 130
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.36 E-value=1e+02 Score=23.11 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQ 39 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQ 39 (376)
.|..+++.|+.|.++|++.+++|-.|
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666554
No 131
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.99 E-value=85 Score=29.21 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=4.5
Q ss_pred ccccchhhhhcccc-cccccccC
Q 017151 206 TSWEDKCACLLLDS-AEMWSFND 227 (376)
Q Consensus 206 ~s~~~Kc~~Ll~ds-~~~WSfn~ 227 (376)
-.|+..|++.|+=+ .+.|..-+
T Consensus 255 ~d~~re~~f~l~~~~~~~Y~v~~ 277 (315)
T 2ve7_A 255 KNPESPFMFSLHLNEARDYEVSD 277 (315)
T ss_dssp -CCCCCC----------------
T ss_pred CCCCceEEEEEEecCCCceEEEe
Confidence 35777888888776 45555554
No 132
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.91 E-value=2.8e+02 Score=21.49 Aligned_cols=72 Identities=21% Similarity=0.125 Sum_probs=41.4
Q ss_pred HHHHhhhhHHHHHhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHH
Q 017151 112 QVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVI 190 (376)
Q Consensus 112 qVkFfQs~vA~AFAERD~slmEaEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi 190 (376)
|+---.+-=|+.-+++|+.-..++.-|.|=|.=...-.. .++.+-..++-=|++-+--..|+.+.+++..=|
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~-------~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREE-------AENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555677889999988888888554433333333 555555555555555555555555555554433
No 133
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.74 E-value=90 Score=23.15 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 11 ESEALMARIQQLEHERDELRKDIEQL 36 (376)
Q Consensus 11 ~~esl~aRI~qLEhERDELrKDIEqL 36 (376)
....|..++.+|+.+..+|..-|++|
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777766
No 134
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.65 E-value=4.2e+02 Score=23.35 Aligned_cols=43 Identities=7% Similarity=-0.040 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHhhh
Q 017151 81 LQEELSEAYRIKGQLADLHAAEVIKNMEAEKQVKFFQGCMAAAFAER 127 (376)
Q Consensus 81 LQEELsEAYRiK~qLadLh~ae~~KN~e~EkqVkFfQs~vA~AFAER 127 (376)
||+=.++..+++..+..| .++ -..++.++..++.-++.+-.+.
T Consensus 13 LQ~lD~~i~~l~~~~~~l-p~e---l~~le~~~~~l~~~~~~~~~~l 55 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREK-RKD---LDKALNDKEAKNKAILNLEEEK 55 (256)
T ss_dssp HHHHHHHHHHTHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-HHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777666665 122 2344555555444444443333
No 135
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=21.50 E-value=36 Score=23.24 Aligned_cols=20 Identities=55% Similarity=0.747 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHhhh
Q 017151 57 TAGLEQEIEILKQKIAACAR 76 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~c~r 76 (376)
+|+|||.|-.|..|-++|-.
T Consensus 2 iaaleqkiaaleqkcaaceq 21 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQ 21 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888853
No 136
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.42 E-value=1.6e+02 Score=22.56 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHHHH
Q 017151 57 TAGLEQEIEILKQKIAA 73 (376)
Q Consensus 57 tA~LEQeIE~Lkkkl~~ 73 (376)
++.||++|..|..+|+.
T Consensus 31 Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 31 LEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34556666666666553
No 137
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.13 E-value=6.5e+02 Score=25.42 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=26.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017151 134 AEKAKEKEELMSQKFNEFQTRLEELSSENIELK 166 (376)
Q Consensus 134 aEKaKE~Ee~m~qk~~e~e~R~~E~~s~~~~qk 166 (376)
.|+.++.+..|-++=..+++++.-++..|+...
T Consensus 507 ~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~ 539 (592)
T 1f5n_A 507 HEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR 539 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888777654
No 138
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.07 E-value=1e+02 Score=24.79 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=22.1
Q ss_pred chhHhHHHHHHHHHHHHhhHHHHhhhhh
Q 017151 229 STSKYISALEDELEKTRSSVENLQSKLR 256 (376)
Q Consensus 229 StskyisaLEee~e~lr~si~~LQskLR 256 (376)
+...=|++|+++...|...+..+.++|+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445588888888888888888888876
No 139
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.04 E-value=2.3e+02 Score=20.23 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 017151 146 QKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEEL 182 (376)
Q Consensus 146 qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq 182 (376)
+...+++.++..|++.......--..|+.++..++.+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666543
No 140
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=20.94 E-value=2.8e+02 Score=24.62 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=43.0
Q ss_pred HhHHhHHHHHHhhhhhHHHHHHHHHHHHHHHHH------HHHHHHHhhhhccchhhhhHHHH
Q 017151 264 HLKKSVRELEKKIIHSDKFISNAIAELRLCHSQ------LRVHVVNSLEEGRSHIKSISDVI 319 (376)
Q Consensus 264 HLkk~~r~LEk~q~~~d~~i~ngis~L~~~h~~------~R~~Im~lL~e~~s~iks~v~~i 319 (376)
++++-+..|++-+...+.++.|-+..++.-... .|+.|+-+|..|..+.+.+.+.+
T Consensus 127 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~le~ig~~~~~~~l~~~l~~~~~t~~~la~~~ 188 (232)
T 2qlz_A 127 KANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGDMTQLAILHYLLLNGRATVEELSDRL 188 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhcCCCCHHHHHHHh
Confidence 456667777777777888887777777766665 89999999999998888776643
No 141
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.93 E-value=2.3e+02 Score=22.32 Aligned_cols=41 Identities=12% Similarity=0.258 Sum_probs=23.7
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 017151 126 ERDNSVMEAEKAKEKEELMSQKF------------NEFQTRLEELSSENIELK 166 (376)
Q Consensus 126 ERD~slmEaEKaKE~Ee~m~qk~------------~e~e~R~~E~~s~~~~qk 166 (376)
+|...|-++|..-+..+.++++. ..+..|+++|.+++...|
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444432 456677888877776544
No 142
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.77 E-value=1.4e+02 Score=22.98 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhH
Q 017151 140 KEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDL 176 (376)
Q Consensus 140 ~Ee~m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl 176 (376)
.++.+...+..=..|+++++..+.........|+..+
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888888777776666665433
No 143
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.70 E-value=97 Score=21.49 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhHHHhhhH
Q 017151 156 EELSSENIELKKQNATLRFDL 176 (376)
Q Consensus 156 ~E~~s~~~~qk~~n~~Lq~dl 176 (376)
...+++++++|++|.-|..++
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHH
Confidence 346677777888887776654
No 144
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.70 E-value=2.9e+02 Score=21.68 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=29.2
Q ss_pred hhhhhhhHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 017151 125 AERDNSVMEAEKAKEKEELMSQKF------------NEFQTRLEELSSENIELK 166 (376)
Q Consensus 125 AERD~slmEaEKaKE~Ee~m~qk~------------~e~e~R~~E~~s~~~~qk 166 (376)
.+|...|-++|..-+..+.++.+. ..+..|++.|.+++...|
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk 87 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE 87 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHH
Confidence 567777788877776666666664 356678888887776544
No 145
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.58 E-value=1.3e+02 Score=29.02 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQ 35 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEq 35 (376)
.+..++.+|+++|+.+.|.|-+
T Consensus 41 ~~~~~~~~l~~~~n~~sk~i~~ 62 (425)
T 2dq3_A 41 EIIKRLEALRSERNKLSKEIGK 62 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777765
No 146
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=20.55 E-value=62 Score=24.68 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=17.1
Q ss_pred hcccccchhhhhcccccccccccCcc
Q 017151 204 LETSWEDKCACLLLDSAEMWSFNDTS 229 (376)
Q Consensus 204 ~~~s~~~Kc~~Ll~ds~~~WSfn~tS 229 (376)
..+..++=--.+-+-+.++|+|||..
T Consensus 88 lgi~~~~v~I~~~e~~~~~wg~~G~t 113 (115)
T 2xcz_A 88 LGIPADRIYIGFEDVPARLWGWNGST 113 (115)
T ss_dssp HCCCGGGEEEEEEECCGGGCEETTEE
T ss_pred hCcCcccEEEEEEECCHHHeeeCCEE
Confidence 45555544444555677899999864
No 147
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=20.40 E-value=1.2e+02 Score=24.29 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHHH
Q 017151 61 EQEIEILKQKIAACARENSNLQEELSEA 88 (376)
Q Consensus 61 EQeIE~Lkkkl~~c~rEn~nLQEELsEA 88 (376)
|++|..|..+|..-..+|.+++++|-..
T Consensus 43 EKTIDDLEDkL~~eKEK~k~i~eeLDqT 70 (77)
T 3mtu_E 43 VSEYNDLEEKVAHAKEENLNMHQMLDQT 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6678888888888888888888887543
No 148
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.30 E-value=3.7e+02 Score=22.24 Aligned_cols=74 Identities=11% Similarity=0.192 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHhhHHHHHhhhhhHHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Q 017151 14 ALMARIQQLEHERDELRKDIEQLCMQQAGPSYLAVATRMHFQRTAGLEQEIEILKQKIAACARENSNLQEELSEAYR 90 (376)
Q Consensus 14 sl~aRI~qLEhERDELrKDIEqLCMQQaGpgyl~vATRM~~QRtA~LEQeIE~Lkkkl~~c~rEn~nLQEELsEAYR 90 (376)
...+.|..|=+--=.-.|||+.|.-.==|++ +..--+.+|.+.|+.|.+...+.+....++...|-+.+-++++
T Consensus 54 ~f~~~~~ela~dli~k~kqIe~LIdsLP~~~---~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVD---VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333333589999986554444 5566778899999999988888887777777777777666655
No 149
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.22 E-value=4e+02 Score=24.57 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHhhHhHHHHHHHHHHHhhhhhhh-hcccc
Q 017151 144 MSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEV-LETSW 208 (376)
Q Consensus 144 m~qk~~e~e~R~~E~~s~~~~qk~~n~~Lq~dl~~~~eq~e~~~kVi~KFyeiR~~~~e~-~~~s~ 208 (376)
.+.+-..+..+++.++..+...|+-|..| ..+-++.+-+-.||..+-.=...+++- .++.|
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eL----keLae~~q~la~vi~~l~~~~~~~~e~~~~~~~ 174 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKEL----AEVAEHVQYMAELIERLNGEPLDNFESLDNQEF 174 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCcccccCchhhhc
Confidence 34555667788888888888888888544 566778888889999877666555554 34443
No 150
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.20 E-value=6.2e+02 Score=24.79 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=4.5
Q ss_pred HhhHHHHHhh
Q 017151 48 VATRMHFQRT 57 (376)
Q Consensus 48 vATRM~~QRt 57 (376)
+|+-|+-+++
T Consensus 25 i~d~L~k~e~ 34 (409)
T 1m1j_C 25 IADFFNKYRL 34 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
Done!