BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017152
         (376 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In
          Plant
          Length = 483

 Score = 28.1 bits (61), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 31 YFVGRSFQSVSFSKIHLPTSISTSFDIAGKEENI 64
          + +GR   S SF +I+L T+I T+ ++A K EN+
Sbjct: 9  FRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENV 42


>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
           Synthetase Complexed With Trna(Val) And Valyl-Adenylate
           Analogue
 pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
           Valyl-Trna Synthetase
 pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
           Valyl-Trna Synthetase
          Length = 862

 Score = 27.7 bits (60), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 182 KRFLHPDV-VAAYEYIFIWDEDLGVE--HFNGDKYMELVKKHGLDISQPG 228
           K F   DV V  Y+ +F+W   + V   HF G++  + V  HGL + + G
Sbjct: 477 KAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKG 526


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,553,675
Number of Sequences: 62578
Number of extensions: 551041
Number of successful extensions: 1012
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 2
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)