Query 017152
Match_columns 376
No_of_seqs 148 out of 174
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:04:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 1E-126 3E-131 915.7 26.7 290 80-369 1-294 (294)
2 cd02510 pp-GalNAc-T pp-GalNAc- 94.6 0.82 1.8E-05 43.3 13.0 136 191-328 82-227 (299)
3 cd04186 GT_2_like_c Subfamily 94.5 0.083 1.8E-06 43.4 5.4 91 192-326 74-165 (166)
4 TIGR01556 rhamnosyltran L-rham 94.4 0.21 4.5E-06 46.6 8.3 128 191-327 72-202 (281)
5 cd02526 GT2_RfbF_like RfbF is 93.6 0.14 3.1E-06 45.4 5.5 123 192-326 75-204 (237)
6 cd04185 GT_2_like_b Subfamily 93.4 0.27 5.8E-06 42.8 6.8 100 191-330 78-177 (202)
7 PF13641 Glyco_tranf_2_3: Glyc 92.3 0.44 9.6E-06 42.2 6.7 126 191-326 85-210 (228)
8 cd02520 Glucosylceramide_synth 91.2 0.27 5.8E-06 43.3 4.0 92 191-326 85-176 (196)
9 cd02525 Succinoglycan_BP_ExoA 90.2 1.6 3.4E-05 38.6 8.0 125 191-326 80-208 (249)
10 cd04195 GT2_AmsE_like GT2_AmsE 88.7 0.27 5.8E-06 42.6 1.9 118 190-324 78-199 (201)
11 cd06433 GT_2_WfgS_like WfgS an 85.5 0.86 1.9E-05 38.5 3.2 36 191-226 74-110 (202)
12 COG1216 Predicted glycosyltran 83.9 5.5 0.00012 38.3 8.3 138 192-331 84-225 (305)
13 cd06437 CESA_CaSu_A2 Cellulose 82.2 0.82 1.8E-05 41.0 1.9 131 191-330 86-217 (232)
14 PF13632 Glyco_trans_2_3: Glyc 79.1 12 0.00025 32.6 8.0 122 195-330 1-127 (193)
15 cd06442 DPM1_like DPM1_like re 79.0 0.83 1.8E-05 40.1 0.8 35 191-225 77-111 (224)
16 PLN02726 dolichyl-phosphate be 77.0 3.2 6.9E-05 38.0 4.0 125 191-326 92-218 (243)
17 cd04196 GT_2_like_d Subfamily 73.3 1.7 3.6E-05 37.6 1.1 46 277-326 158-203 (214)
18 cd06913 beta3GnTL1_like Beta 1 71.1 3.9 8.5E-05 36.3 3.0 128 191-327 83-210 (219)
19 cd04188 DPG_synthase DPG_synth 69.7 1.5 3.3E-05 38.7 0.1 34 191-224 81-114 (211)
20 PF00535 Glycos_transf_2: Glyc 67.0 4.1 9E-05 32.8 2.1 39 191-229 77-115 (169)
21 PRK11204 N-glycosyltransferase 66.5 18 0.00039 36.0 6.8 192 120-330 54-264 (420)
22 cd06434 GT2_HAS Hyaluronan syn 66.2 3.1 6.8E-05 36.8 1.3 41 191-231 76-116 (235)
23 cd06439 CESA_like_1 CESA_like_ 65.8 4.6 0.0001 36.4 2.3 40 191-230 108-147 (251)
24 cd06421 CESA_CelA_like CESA_Ce 65.5 5 0.00011 35.4 2.4 125 191-327 83-212 (234)
25 PTZ00260 dolichyl-phosphate be 63.1 5.1 0.00011 39.7 2.3 184 120-321 70-287 (333)
26 PF13506 Glyco_transf_21: Glyc 62.1 5.6 0.00012 35.9 2.2 121 191-326 30-153 (175)
27 PF09258 Glyco_transf_64: Glyc 61.2 9.1 0.0002 36.8 3.6 91 129-220 8-103 (247)
28 cd06435 CESA_NdvC_like NdvC_li 59.0 5.2 0.00011 35.7 1.4 123 192-323 84-206 (236)
29 PF01762 Galactosyl_T: Galacto 56.9 39 0.00084 30.4 6.7 173 105-310 6-186 (195)
30 cd06420 GT2_Chondriotin_Pol_N 56.6 28 0.00061 29.4 5.4 27 191-217 78-104 (182)
31 PF02434 Fringe: Fringe-like; 55.0 7.3 0.00016 37.4 1.8 122 191-332 85-213 (252)
32 PF03672 UPF0154: Uncharacteri 54.4 4.6 0.0001 32.3 0.3 17 19-35 3-19 (64)
33 cd02522 GT_2_like_a GT_2_like_ 53.1 23 0.00049 31.0 4.4 40 191-230 71-110 (221)
34 PRK10073 putative glycosyl tra 50.2 30 0.00065 34.1 5.2 102 120-226 6-119 (328)
35 cd00761 Glyco_tranf_GTA_type G 44.8 17 0.00038 28.2 2.2 22 192-213 77-98 (156)
36 cd06423 CESA_like CESA_like is 44.7 12 0.00027 29.8 1.3 38 192-229 78-116 (180)
37 PF10111 Glyco_tranf_2_2: Glyc 43.5 30 0.00065 33.1 3.9 25 191-215 87-111 (281)
38 PRK14583 hmsR N-glycosyltransf 42.9 66 0.0014 32.9 6.5 95 120-219 75-182 (444)
39 PRK01844 hypothetical protein; 42.3 9.4 0.0002 31.3 0.3 15 20-34 11-25 (72)
40 cd04184 GT2_RfbC_Mx_like Myxoc 41.9 20 0.00043 30.9 2.2 37 191-227 82-119 (202)
41 cd04192 GT_2_like_e Subfamily 41.0 21 0.00045 31.1 2.3 37 191-227 81-117 (229)
42 cd06427 CESA_like_2 CESA_like_ 36.5 32 0.0007 31.2 2.9 38 191-228 83-122 (241)
43 PRK11677 hypothetical protein; 34.2 15 0.00033 33.0 0.4 19 19-37 6-24 (134)
44 KOG3708 Uncharacterized conser 34.2 19 0.00041 39.4 1.1 79 136-216 42-121 (681)
45 TIGR03469 HonB hopene-associat 34.0 38 0.00083 33.9 3.2 33 193-225 134-166 (384)
46 PF09828 Chrome_Resist: Chroma 33.3 30 0.00064 31.4 2.0 53 177-235 14-84 (135)
47 PLN03133 beta-1,3-galactosyltr 32.8 1.1E+02 0.0024 34.1 6.6 172 99-309 394-580 (636)
48 PF06295 DUF1043: Protein of u 32.3 16 0.00035 32.0 0.2 19 19-37 2-20 (128)
49 PRK00523 hypothetical protein; 32.1 17 0.00037 29.8 0.3 15 20-34 12-26 (72)
50 PF14654 Epiglycanin_C: Mucin, 30.8 19 0.00041 31.4 0.3 30 10-39 8-42 (106)
51 PF12996 DUF3880: DUF based on 26.0 33 0.00071 27.3 1.0 16 187-202 13-28 (79)
52 cd06438 EpsO_like EpsO protein 24.9 70 0.0015 27.7 2.9 29 191-219 80-108 (183)
53 COG0607 PspE Rhodanese-related 24.8 50 0.0011 26.0 1.8 40 119-159 61-100 (110)
54 PF12072 DUF3552: Domain of un 24.6 20 0.00044 33.4 -0.6 18 20-37 3-20 (201)
55 TIGR03472 HpnI hopanoid biosyn 22.6 56 0.0012 32.5 2.0 125 191-326 125-252 (373)
56 PRK10714 undecaprenyl phosphat 22.1 65 0.0014 31.8 2.3 98 120-224 6-121 (325)
57 PF12621 DUF3779: Phosphate me 21.6 51 0.0011 27.5 1.3 44 182-229 34-77 (95)
58 cd04179 DPM_DPG-synthase_like 21.2 60 0.0013 27.4 1.7 36 192-227 79-114 (185)
59 KOG2287 Galactosyltransferases 21.0 4.5E+02 0.0098 26.6 8.1 180 95-311 100-293 (349)
60 PF07745 Glyco_hydro_53: Glyco 20.8 66 0.0014 32.8 2.2 40 105-160 42-86 (332)
61 cd04191 Glucan_BSP_ModH Glucan 20.6 64 0.0014 30.9 1.9 36 191-226 94-130 (254)
62 PLN02867 Probable galacturonos 20.4 42 0.00092 36.5 0.7 34 182-216 334-367 (535)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=1.2e-126 Score=915.69 Aligned_cols=290 Identities=64% Similarity=1.184 Sum_probs=284.1
Q ss_pred eeccCCCCCCCCCCCcceecCcccccccccCCCCcccCCCCCeEEEEEecCcchhchhhhhhc---CcEEEEEEECCCCC
Q 017152 80 IYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKK---DFQIMLFHYDGQTS 156 (376)
Q Consensus 80 ~~~~~~~~g~e~lp~giv~~~sd~~~~~lwg~p~~~~~~~~k~Lv~~~VG~~qk~~V~~~v~k---~Fdv~LFhYDG~~~ 156 (376)
||++++|+|+|+||+|||+++|||+||||||.|.+|....+|||||||||+|||++||++|+| |||||||||||+++
T Consensus 1 ~~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf~~nF~i~LfhYDg~vd 80 (294)
T PF05212_consen 1 IWVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKFSDNFDIMLFHYDGRVD 80 (294)
T ss_pred CCcCCCCCccccCCCCccccCCCceeeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhhccCceEEEEEecCCcC
Confidence 689999999999999999999999999999999999998899999999999999999999999 99999999999999
Q ss_pred cccccccCCcceEEEeeccccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCC-c
Q 017152 157 QWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG-L 235 (376)
Q Consensus 157 ~w~d~~ws~~aihv~~~kqtKWw~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~-i 235 (376)
+|++|+||++||||+++|||||||||||||||+|++|||||||||||+||+|+|+|||+||++||||||||||+++++ +
T Consensus 81 ~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~ 160 (294)
T PF05212_consen 81 EWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEI 160 (294)
T ss_pred chhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875 9
Q ss_pred ceeeeeecCCceeeeeeccCCCCCCCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcE
Q 017152 236 TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKI 315 (376)
Q Consensus 236 sh~iT~R~~~~~vhr~~~~~~g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~ki 315 (376)
||++|+|++++++|+.+.+++++|+++|+||||||||||||||||+|||||||||||||+|||||||+|++|++.+++||
T Consensus 161 ~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~ki 240 (294)
T PF05212_consen 161 HHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKI 240 (294)
T ss_pred eeeEEeecCCceeEeccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccE
Confidence 99999999999999988888888999999999999999999999999999999999999999999999999998889999
Q ss_pred EEEeeeeEEeecCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017152 316 GVVDSQWIIHQVIPSLGSQGQAENGKAPWEGVRARCKNEWSLFQNRLANADKAY 369 (376)
Q Consensus 316 GVVDa~~VvH~g~PtLg~qg~~~~~~~~~~~vr~r~~~E~~~F~~R~~~a~k~~ 369 (376)
||||||||+|+|+||||+||.+.++..+|.+||+||++||++|++||++|+|+|
T Consensus 241 GVVDs~~VvH~gvptLG~~~~~~~~~~~~~~Vr~r~~~E~~~F~~R~~~a~~~~ 294 (294)
T PF05212_consen 241 GVVDSQYVVHTGVPTLGGQGNSEKGKDPREEVRRRSFAEMRIFQKRWANAVKEY 294 (294)
T ss_pred EEEeeEEEEEcCCCcCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999987
No 2
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=94.60 E-value=0.82 Score=43.26 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=75.7
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCC--cceeeeeec-C---CceeeeeeccCC--CCCCC-
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG--LTWQMTKRR-G---DQEVHKVTEEKP--GWCSD- 261 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~--ish~iT~R~-~---~~~vhr~~~~~~--g~C~~- 261 (376)
+..|||++.|+|..++..-++++++.+....-.+.-|.+..-.. ..+.-.... . ...++..-.... ..+..
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 67999999999999999999999999998877777777654321 112111100 0 001111000000 00000
Q ss_pred CCCCCccceEEEecccccHHHHHHhhhhhcCCCcccch-HhHHhhHhhcCCCCcEEEEeeeeEEeecC
Q 017152 262 PHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWG-LDFALRRCVEPAHEKIGVVDSQWIIHQVI 328 (376)
Q Consensus 262 ~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWG-LDf~~~~c~~~~~~kiGVVDa~~VvH~g~ 328 (376)
+..+..+..+-..+=+++|++|..+=.+ .... ..|| =|.-+..-+.-...+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vGgf-De~~-~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELGGY-DEGM-DIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhCCC-CCcc-cccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 1111122233333447999999887444 3333 4565 35443222222456898999999999765
No 3
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.50 E-value=0.083 Score=43.37 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=61.5
Q ss_pred CccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccce
Q 017152 192 AYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 270 (376)
Q Consensus 192 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQPALd~~S~ish~iT~R~~~~~vhr~~~~~~g~C~~~~~ppcT~F 270 (376)
.+|||++.|||...+...+.++.+.+.+. +..+..+.
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 111 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------------ 111 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------------
Confidence 79999999999999888888888754443 33333222
Q ss_pred EEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEee
Q 017152 271 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 326 (376)
Q Consensus 271 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 326 (376)
+=..+.+|++++|+.+-.+ .... ..+|-|..+...+.....++..+....+.|.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 VSGAFLLVRREVFEEVGGF-DEDF-FLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred CceeeEeeeHHHHHHcCCC-Chhh-hccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 0012347899999876332 2222 2377787766555445689999999999996
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=94.35 E-value=0.21 Score=46.60 Aligned_cols=128 Identities=9% Similarity=0.031 Sum_probs=73.0
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHh--CCcccCCCccC-CCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCc
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH--GLDISQPGLEP-NNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPC 267 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~--gLeISQPALd~-~S~ish~iT~R~~~~~vhr~~~~~~g~C~~~~~ppc 267 (376)
+.+|||++.|||..++.-.++++++.+++. +.-+..|..-. +.....+...... ... +... ..+.+.+.-
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-----~~~~~~~~~ 144 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDG-LLL-RQIS-----LDGLTTPQK 144 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecc-cce-eeec-----ccccCCcee
Confidence 379999999999999998899999988876 56777776522 2211122211111 110 1000 000000000
Q ss_pred cceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEeec
Q 017152 268 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQV 327 (376)
Q Consensus 268 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g 327 (376)
+.++=.-..+++|++++.+=. +..++- .++.|.-|..-+.....++.++....+.|..
T Consensus 145 ~~~~~~sg~li~~~~~~~iG~-fde~~f-i~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~ 202 (281)
T TIGR01556 145 TSFLISSGCLITREVYQRLGM-MDEELF-IDHVDTEWSLRAQNYGIPLYIDPDIVLEHRI 202 (281)
T ss_pred ccEEEcCcceeeHHHHHHhCC-ccHhhc-ccchHHHHHHHHHHCCCEEEEeCCEEEEEec
Confidence 111100123789999988733 334442 4667876633333345789999999999973
No 5
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.61 E-value=0.14 Score=45.44 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=63.3
Q ss_pred CccEEEEecccccCCCCChHHHH---HHHH-HhCCcccCCCccCCCC-cceeeeeecCCceeeeeeccCCCCCCCCCCCC
Q 017152 192 AYEYIFIWDEDLGVEHFNGDKYM---ELVK-KHGLDISQPGLEPNNG-LTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPP 266 (376)
Q Consensus 192 ~YDYIflwDDDL~vd~f~i~ryf---~Ivr-~~gLeISQPALd~~S~-ish~iT~R~~~~~vhr~~~~~~g~C~~~~~pp 266 (376)
.||||++.|+|..++...+.+++ +..+ ...+-+..|....... ..... .+.....+.. .. + ...+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~----~---~~~~ 144 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPG-VRKSGYKLRI--QK----E---GEEG 144 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccc-eeccCcccee--cc----c---ccCC
Confidence 58999999999999988888885 2222 2234455554432221 11110 0111110000 00 0 0000
Q ss_pred ccceEEEe--cccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEee
Q 017152 267 CAAFVEIM--APVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 326 (376)
Q Consensus 267 cT~FVEiM--APVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 326 (376)
+...-.++ +-+|+|++++.+=.+ ..+. ...|-|+.|..-+.-...++..+....+.|.
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggf-d~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGF-DEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVLKHE 204 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCC-CHHH-cCccchHHHHHHHHHcCCcEEEEcCeEEEec
Confidence 11111111 126899999887444 2232 1335566655444445678998888888886
No 6
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.45 E-value=0.27 Score=42.84 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=66.9
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccce
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 270 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vhr~~~~~~g~C~~~~~ppcT~F 270 (376)
+.+||+++.|+|..++...++++.+.++..++.+..|....... ++.++
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~ 126 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-------------------------------SFVGV 126 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-------------------------------ceEEE
Confidence 57999999999999998888888888775555555443322110 11122
Q ss_pred EEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEeecCCC
Q 017152 271 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS 330 (376)
Q Consensus 271 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt 330 (376)
+++|++|+.+ ..+. +.-..||=|.-+..-+.....++ .+.+..+.|....+
T Consensus 127 ------~~~~~~~~~~-g~~~-~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~ 177 (202)
T cd04185 127 ------LISRRVVEKI-GLPD-KEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAIN 177 (202)
T ss_pred ------EEeHHHHHHh-CCCC-hhhhccchHHHHHHHHHHcCCcE-EecceEEEEccccc
Confidence 4889999766 3332 33347887876654444456788 99999999995444
No 7
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=92.32 E-value=0.44 Score=42.16 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=64.9
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccce
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 270 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vhr~~~~~~g~C~~~~~ppcT~F 270 (376)
..+|||++.|+|..++...+.++++.+...+..+.|+....... ...++.-......+.......+.-. -...+|+
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 160 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDND-RNWLTRLQDLFFARWHLRFRSGRRA-LGVAFLS-- 160 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTC-CCEEEE-TT--S-EETTTS-TT-B-----S-B---
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCC-CCHHHHHHHHHHhhhhhhhhhhhcc-cceeecc--
Confidence 45999999999999999999999999977888888876644321 1122211111100100000000000 0011111
Q ss_pred EEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEee
Q 017152 271 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 326 (376)
Q Consensus 271 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 326 (376)
.-+=+|+|++++.+-.+ +. ..-|=|+.+..-+.....++.......+.|.
T Consensus 161 --G~~~~~rr~~~~~~g~f--d~--~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 161 --GSGMLFRRSALEEVGGF--DP--FILGEDFDLCLRLRAAGWRIVYAPDALVYHE 210 (228)
T ss_dssp ---TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHHTT--EEEEEEEEEEE-
T ss_pred --CcEEEEEHHHHHHhCCC--CC--CCcccHHHHHHHHHHCCCcEEEECCcEEEEe
Confidence 12337999999888654 22 3446787776555556789999998888887
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=91.20 E-value=0.27 Score=43.32 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=57.1
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccce
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 270 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vhr~~~~~~g~C~~~~~ppcT~F 270 (376)
+.+|||++.|.|..++...+.++++.....+..+.++. | +++
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~------------------------------~-------~~g- 126 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL------------------------------C-------AFG- 126 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee------------------------------c-------ccC-
Confidence 57999999999998887777777765432222222211 0 011
Q ss_pred EEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEee
Q 017152 271 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 326 (376)
Q Consensus 271 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 326 (376)
.+-+|+|++|+.+-.+ .....-++=|+.+..-+.....++..++.. ++|+
T Consensus 127 ---~~~~~r~~~~~~~ggf--~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~-~~~~ 176 (196)
T cd02520 127 ---KSMALRREVLDAIGGF--EAFADYLAEDYFLGKLIWRLGYRVVLSPYV-VMQP 176 (196)
T ss_pred ---ceeeeEHHHHHhccCh--HHHhHHHHHHHHHHHHHHHcCCeEEEcchh-eecc
Confidence 2347899999877443 121123467888776665567889888775 5554
No 9
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=90.18 E-value=1.6 Score=38.65 Aligned_cols=125 Identities=13% Similarity=0.007 Sum_probs=66.5
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCC-CcceeeeeecCCceeeeeeccCCCCCCCC---CCCC
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNN-GLTWQMTKRRGDQEVHKVTEEKPGWCSDP---HLPP 266 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S-~ish~iT~R~~~~~vhr~~~~~~g~C~~~---~~pp 266 (376)
+.+|||.+.|+|..++...++++++..++.+..+.+....... ................. .....+... ...+
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 156 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGS---GGSAYRGGAVKIGYVD 156 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhcc---CCcccccccccccccc
Confidence 4799999999999999888999998888877776655432211 10000000000000000 000000000 0000
Q ss_pred ccceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEee
Q 017152 267 CAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 326 (376)
Q Consensus 267 cT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 326 (376)
+.+ +=+|+|++|+.+=.+ .... ..|-|+.+..-+.....++..+....+.|.
T Consensus 157 ~~~-----~~~~~~~~~~~~g~~-~~~~--~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~ 208 (249)
T cd02525 157 TVH-----HGAYRREVFEKVGGF-DESL--VRNEDAELNYRLRKAGYKIWLSPDIRVYYY 208 (249)
T ss_pred ccc-----cceEEHHHHHHhCCC-Cccc--CccchhHHHHHHHHcCcEEEEcCCeEEEEc
Confidence 111 116899999876332 2233 346676554333334578999998888887
No 10
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.66 E-value=0.27 Score=42.56 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=63.3
Q ss_pred ccCccEEEEecccccCCCCChHHHHHHHHHh-CCcccCCCccCCC--CcceeeeeecCCceeeeeecc-CCCCCCCCCCC
Q 017152 190 VAAYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPGLEPNN--GLTWQMTKRRGDQEVHKVTEE-KPGWCSDPHLP 265 (376)
Q Consensus 190 v~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQPALd~~S--~ish~iT~R~~~~~vhr~~~~-~~g~C~~~~~p 265 (376)
.+.+|||++.|+|..++.-.++++++.++++ +..+..+....-. ...+.... .+.. .+.... ....|
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~------ 148 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTS--HDDILKFARRRS------ 148 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc-CCCC--HHHHHHHhccCC------
Confidence 3679999999999999988889988887654 5666555432211 11111000 0000 000000 00111
Q ss_pred CccceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEE
Q 017152 266 PCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWII 324 (376)
Q Consensus 266 pcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~Vv 324 (376)
.+..++=+|+|+++..+-.+- .. -++-|+.+...+.....++..++...+.
T Consensus 149 ----~~~~~~~~~rr~~~~~~g~~~--~~--~~~eD~~~~~r~~~~g~~~~~~~~~~~~ 199 (201)
T cd04195 149 ----PFNHPTVMFRKSKVLAVGGYQ--DL--PLVEDYALWARMLANGARFANLPEILVK 199 (201)
T ss_pred ----CCCChHHhhhHHHHHHcCCcC--CC--CCchHHHHHHHHHHcCCceecccHHHhh
Confidence 111122378999998876552 22 4577877665543345677776554433
No 11
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.49 E-value=0.86 Score=38.49 Aligned_cols=36 Identities=11% Similarity=-0.072 Sum_probs=26.9
Q ss_pred cCccEEEEecccccCCCCChHHHHHHH-HHhCCcccC
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELV-KKHGLDISQ 226 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Iv-r~~gLeISQ 226 (376)
+..|||++.|+|..++...+.++++.. +..+..+..
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVY 110 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEE
Confidence 468999999999999998888888444 333454443
No 12
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=83.92 E-value=5.5 Score=38.34 Aligned_cols=138 Identities=16% Similarity=0.050 Sum_probs=85.0
Q ss_pred CccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCc----eeeeeeccCCCCCCCCCCCCc
Q 017152 192 AYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQ----EVHKVTEEKPGWCSDPHLPPC 267 (376)
Q Consensus 192 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~----~vhr~~~~~~g~C~~~~~ppc 267 (376)
.|+|++++++|..++...++++++.+++.+-...-+++-.+..-+-.+..+.... ..++..............+.|
T Consensus 84 ~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (305)
T COG1216 84 GDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEV 163 (305)
T ss_pred CCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhh
Confidence 3559999999999999999999999999988877777666533222222221100 001000000001111112334
Q ss_pred cceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEeecCCCC
Q 017152 268 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSL 331 (376)
Q Consensus 268 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~PtL 331 (376)
..++..-+-+++|++++.+=.+ ..+.- .+.-|.-|..=+.-...++..+=.-.|.|..--+.
T Consensus 164 ~~~~~G~~~li~~~~~~~vG~~-de~~F-~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~ 225 (305)
T COG1216 164 VASLSGACLLIRREAFEKVGGF-DERFF-IYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSK 225 (305)
T ss_pred hhhcceeeeEEcHHHHHHhCCC-Ccccc-eeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCC
Confidence 4467777789999999988653 33443 66777766544444456899998999999755444
No 13
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=82.16 E-value=0.82 Score=41.02 Aligned_cols=131 Identities=17% Similarity=-0.003 Sum_probs=68.7
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeee-eecCCceeeeeeccCCCCCCCCCCCCccc
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMT-KRRGDQEVHKVTEEKPGWCSDPHLPPCAA 269 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT-~R~~~~~vhr~~~~~~g~C~~~~~ppcT~ 269 (376)
+.+|||++.|.|..++...++++..+....+..+.|+-+.....-...++ .+.-....|.... ..+. ....+..
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~ 160 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIE-QVAR----SSTGLFF 160 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHh-HhhH----hhcCCeE
Confidence 58999999999999998888887776655555555553321100000000 0000000000000 0000 0000111
Q ss_pred eEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEeecCCC
Q 017152 270 FVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS 330 (376)
Q Consensus 270 FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt 330 (376)
.+=.++-+|+|++|+.+-.+- .+ ..+=|+.+...+.....++..++...+.|...++
T Consensus 161 ~~~g~~~~~rr~~~~~vgg~~-~~---~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~ 217 (232)
T cd06437 161 NFNGTAGVWRKECIEDAGGWN-HD---TLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPAS 217 (232)
T ss_pred EeccchhhhhHHHHHHhCCCC-CC---cchhhHHHHHHHHHCCCeEEEeccceeeeeCCcC
Confidence 111122379999998875542 22 2367877665554456799999988888874344
No 14
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=79.12 E-value=12 Score=32.64 Aligned_cols=122 Identities=18% Similarity=0.129 Sum_probs=68.1
Q ss_pred EEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceee-----eeeccCCCCCCCCCCCCccc
Q 017152 195 YIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVH-----KVTEEKPGWCSDPHLPPCAA 269 (376)
Q Consensus 195 YIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vh-----r~~~~~~g~C~~~~~ppcT~ 269 (376)
||.+.|+|..++.....+..+.++.-+..+.|+...... ....++.-+...... +......|.| .
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 70 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRP--------L- 70 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCC--------c-
Confidence 789999999999988999988888558888888887642 111122211111100 0000111211 1
Q ss_pred eEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEeecCCC
Q 017152 270 FVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS 330 (376)
Q Consensus 270 FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt 330 (376)
++=.-.=++++++++.+=.+-.+. -.|=|..+..=+.....+++.++...+ |+..|.
T Consensus 71 ~~~G~~~~~r~~~l~~vg~~~~~~---~~~ED~~l~~~l~~~G~~~~~~~~~~~-~~~~p~ 127 (193)
T PF13632_consen 71 FLSGSGMLFRREALREVGGFDDPF---SIGEDMDLGFRLRRAGYRIVYVPDAIV-YTEAPP 127 (193)
T ss_pred cccCcceeeeHHHHHHhCcccccc---cccchHHHHHHHHHCCCEEEEecccce-eeeCCC
Confidence 111223479999998762220112 234566554333334589999998844 543443
No 15
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=79.04 E-value=0.83 Score=40.08 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=25.9
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCccc
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDIS 225 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeIS 225 (376)
+..|||++.|+|..++...+.++++.+...+..+.
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 55799999999988877777777777555555443
No 16
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=76.97 E-value=3.2 Score=38.01 Aligned_cols=125 Identities=13% Similarity=0.167 Sum_probs=64.2
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCC-CCc-ceeeeeecCCceeeeeeccCCCCCCCCCCCCcc
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPN-NGL-TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCA 268 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~-S~i-sh~iT~R~~~~~vhr~~~~~~g~C~~~~~ppcT 268 (376)
+..|||++.|.|...+...++++++.+.+.+.++.....-.. +.. .|....+.......... ..+.......++
T Consensus 92 a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~----~~~~~~~~~d~~ 167 (243)
T PLN02726 92 ASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLA----QTLLWPGVSDLT 167 (243)
T ss_pred cCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHH----HHHhCCCCCcCC
Confidence 578999999999999888889999888777766654432111 111 11111110000000000 000000011111
Q ss_pred ceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEee
Q 017152 269 AFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 326 (376)
Q Consensus 269 ~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 326 (376)
..+-+|+|++++.+..+...+ ...+.+|+.+... ....++.-|.-.++.|.
T Consensus 168 ----g~~~~~rr~~~~~i~~~~~~~-~~~~~~el~~~~~--~~g~~i~~vp~~~~~r~ 218 (243)
T PLN02726 168 ----GSFRLYKRSALEDLVSSVVSK-GYVFQMEIIVRAS--RKGYRIEEVPITFVDRV 218 (243)
T ss_pred ----CcccceeHHHHHHHHhhccCC-CcEEehHHHHHHH--HcCCcEEEeCcEEeCCC
Confidence 123379999999886554322 1223444433222 23467888887777775
No 17
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.30 E-value=1.7 Score=37.57 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=31.7
Q ss_pred cccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEee
Q 017152 277 VFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 326 (376)
Q Consensus 277 VFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 326 (376)
+|+|++++.+-.+. ... .|+-|+.+..++.. ..++..++...+.|+
T Consensus 158 ~~r~~~~~~~~~~~-~~~--~~~~D~~~~~~~~~-~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPFP-DAD--VIMHDWWLALLASA-FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhcccc-ccc--cccchHHHHHHHHH-cCceEEcchhHHHHh
Confidence 79999998876553 222 56777666555543 458888888777766
No 18
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=71.09 E-value=3.9 Score=36.32 Aligned_cols=128 Identities=13% Similarity=-0.063 Sum_probs=63.1
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccce
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 270 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vhr~~~~~~g~C~~~~~ppcT~F 270 (376)
+.+|||++.|+|..++...+.+.+..+.+....+.-+.......-...-..+ ....+..... .......++ ||+
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~-~~~-- 156 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTR-WINTLTREQL--LTQVYTSHG-PTV-- 156 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHH-HHHhcCHHHH--HHHHHhhcC-Ccc--
Confidence 6799999999999999988888877776544322222111100000000000 0000000000 000000111 121
Q ss_pred EEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEeec
Q 017152 271 VEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQV 327 (376)
Q Consensus 271 VEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g 327 (376)
-+-.-+++|++|+.+=.+- +..-+++=|+.+.+.+.....+|.-+|...+.++.
T Consensus 157 -~~~~~~~rr~~~~~~g~f~--~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 157 -IMPTWFCSREWFSHVGPFD--EGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred -ccccceeehhHHhhcCCcc--chhccchhHHHHHHHHHHcCCceEEEcceeeeeee
Confidence 0111257999998775442 22225567876655433345789999987777663
No 19
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=69.71 E-value=1.5 Score=38.69 Aligned_cols=34 Identities=35% Similarity=0.433 Sum_probs=25.4
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcc
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDI 224 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeI 224 (376)
+..|||++.|.|...+...+.++++.+...+..+
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~ 114 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDI 114 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcE
Confidence 4569999999998888777777777754444443
No 20
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=67.05 E-value=4.1 Score=32.84 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=30.3
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCc
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGL 229 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPAL 229 (376)
+..|||++.|||..++.-.++++++.+++.+-.+.-+..
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 567899999999999999999999999997765544333
No 21
>PRK11204 N-glycosyltransferase; Provisional
Probab=66.48 E-value=18 Score=36.01 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=91.9
Q ss_pred CCeEEEEEecCcchhchhhhhhc-------CcEEEEEEECCCCCcccc-c-ccCCc--ceEEEe--eccccccccccccC
Q 017152 120 PKYLLTITVGLNQKKNIDRMVKK-------DFQIMLFHYDGQTSQWDE-F-EWSKS--AIHVSI--RRQTKWWYAKRFLH 186 (376)
Q Consensus 120 ~k~Lv~~~VG~~qk~~V~~~v~k-------~Fdv~LFhYDG~~~~w~d-~-~ws~~--aihv~~--~kqtKWw~akRfLH 186 (376)
++.-+.+++ ++..+.+.++++. +++|++. =||+.|+=.+ + ++.++ -+++.. .+.+|=.-.+.-+
T Consensus 54 p~vsViIp~-yne~~~i~~~l~sl~~q~yp~~eiiVv-dD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~- 130 (420)
T PRK11204 54 PGVSILVPC-YNEGENVEETISHLLALRYPNYEVIAI-NDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGA- 130 (420)
T ss_pred CCEEEEEec-CCCHHHHHHHHHHHHhCCCCCeEEEEE-ECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHH-
Confidence 456666666 3344444444432 6788764 4565554211 0 01111 133332 3444422222111
Q ss_pred cccccCccEEEEecccccCCCCChHHHHHHHHH-hCCcccCC--CccCCC-CcceeeeeecCCceee--eeeccCCCCCC
Q 017152 187 PDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKK-HGLDISQP--GLEPNN-GLTWQMTKRRGDQEVH--KVTEEKPGWCS 260 (376)
Q Consensus 187 Pdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~-~gLeISQP--ALd~~S-~ish~iT~R~~~~~vh--r~~~~~~g~C~ 260 (376)
-.+.||||++.|.|..++...++++.+.+++ .+..+.|. ...... ...+..+..- ..... ++.....|
T Consensus 131 --~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--- 204 (420)
T PRK11204 131 --AAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEF-SSIIGLIKRAQRVYG--- 204 (420)
T ss_pred --HHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHH-HHhhhHHHHHHHHhC---
Confidence 1267999999999999988888888888753 33433332 221111 0000000000 00000 00000000
Q ss_pred CCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEeecCCC
Q 017152 261 DPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPS 330 (376)
Q Consensus 261 ~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~Pt 330 (376)
....+-.++-+|+|++++.+=.+ ..+.. +=|+.+..-+.....++..+....+.|...++
T Consensus 205 ------~~~~~~G~~~~~rr~~l~~vgg~-~~~~~---~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t 264 (420)
T PRK11204 205 ------RVFTVSGVITAFRKSALHEVGYW-STDMI---TEDIDISWKLQLRGWDIRYEPRALCWILMPET 264 (420)
T ss_pred ------CceEecceeeeeeHHHHHHhCCC-CCCcc---cchHHHHHHHHHcCCeEEeccccEEEeECccc
Confidence 01112233457999999876333 22322 44666655554456788888887777773333
No 22
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=66.17 E-value=3.1 Score=36.84 Aligned_cols=41 Identities=5% Similarity=-0.056 Sum_probs=35.6
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccC
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEP 231 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~ 231 (376)
+.+|||++.|+|..++...++++++.+...+..+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 57999999999999999999999999887788888776544
No 23
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=65.80 E-value=4.6 Score=36.37 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=31.6
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCcc
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLE 230 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd 230 (376)
+..|||++.|+|..++...+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 3569999999999999888888888887666666665554
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=65.49 E-value=5 Score=35.35 Aligned_cols=125 Identities=11% Similarity=-0.095 Sum_probs=70.5
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHH-hCCcccCCCccCC-CCcceeeeeecC---CceeeeeeccCCCCCCCCCCC
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKK-HGLDISQPGLEPN-NGLTWQMTKRRG---DQEVHKVTEEKPGWCSDPHLP 265 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~-~gLeISQPALd~~-S~ish~iT~R~~---~~~vhr~~~~~~g~C~~~~~p 265 (376)
+.+|||++.|+|..++...+.++++.+.+ .++.+.++..... ......+..... ....+. ....... .
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~ 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGV-IQPGRDR------W 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHH-HHHHHhh------c
Confidence 47999999999999999999999999987 6676766543211 000000000000 000000 0000000 1
Q ss_pred CccceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEeec
Q 017152 266 PCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQV 327 (376)
Q Consensus 266 pcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g 327 (376)
++ .++=.+.=+|+|++++.+-.+- .+ ..+-|+.+..-+.....++..++...+.|..
T Consensus 156 ~~-~~~~g~~~~~r~~~~~~ig~~~-~~---~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~ 212 (234)
T cd06421 156 GA-AFCCGSGAVVRREALDEIGGFP-TD---SVTEDLATSLRLHAKGWRSVYVPEPLAAGLA 212 (234)
T ss_pred CC-ceecCceeeEeHHHHHHhCCCC-cc---ceeccHHHHHHHHHcCceEEEecCccccccC
Confidence 11 1221234489999999886552 22 4477877764443345688888888777763
No 25
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=63.12 E-value=5.1 Score=39.66 Aligned_cols=184 Identities=16% Similarity=0.218 Sum_probs=91.7
Q ss_pred CCeEEEEEecCcchhchhhhhhc---------------CcEEEEEEECCCCCcccc--cccCCc------ceEEEe--ec
Q 017152 120 PKYLLTITVGLNQKKNIDRMVKK---------------DFQIMLFHYDGQTSQWDE--FEWSKS------AIHVSI--RR 174 (376)
Q Consensus 120 ~k~Lv~~~VG~~qk~~V~~~v~k---------------~Fdv~LFhYDG~~~~w~d--~~ws~~------aihv~~--~k 174 (376)
++--|.+++ ++...++..+++. ++.|++ .=||+.|+=.+ -++.++ -+++.. ++
T Consensus 70 ~~isVVIP~-yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIV-VDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N 147 (333)
T PTZ00260 70 VDLSIVIPA-YNEEDRLPKMLKETIKYLESRSRKDPKFKYEIII-VNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRN 147 (333)
T ss_pred eEEEEEEee-CCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEE-EeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCC
Confidence 344555554 5555555544432 456654 67888764211 111111 144433 45
Q ss_pred cccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHH---hCCcccCCCccC--CC-Cc-ceeeeeecCCce
Q 017152 175 QTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKK---HGLDISQPGLEP--NN-GL-TWQMTKRRGDQE 247 (376)
Q Consensus 175 qtKWw~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~---~gLeISQPALd~--~S-~i-sh~iT~R~~~~~ 247 (376)
++|-.-.+.=+. .+..|||++.|.|...+..++.++++.+++ .+.++..-.... ++ .. ..+..++--...
T Consensus 148 ~G~~~A~~~Gi~---~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~ 224 (333)
T PTZ00260 148 KGKGGAVRIGML---ASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYG 224 (333)
T ss_pred CChHHHHHHHHH---HccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHH
Confidence 555432221111 257899999999999999999999998875 444443332211 11 00 111111000111
Q ss_pred eeeeeccCCCCCCCCCCCCccceEEEecc--cccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeee
Q 017152 248 VHKVTEEKPGWCSDPHLPPCAAFVEIMAP--VFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQ 321 (376)
Q Consensus 248 vhr~~~~~~g~C~~~~~ppcT~FVEiMAP--VFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~ 321 (376)
.|.-. ..+.+ +++-+.++. +|+|++++-+.+.+ ...+|+.|.-+...+...+.+|.-|--.
T Consensus 225 ~~~l~----~~~~~------~~i~D~~~Gfk~~~r~~~~~i~~~~---~~~~~~fd~Ell~~a~~~g~~I~EvPv~ 287 (333)
T PTZ00260 225 FHFIV----NTICG------TNLKDTQCGFKLFTRETARIIFPSL---HLERWAFDIEIVMIAQKLNLPIAEVPVN 287 (333)
T ss_pred HHHHH----HHHcC------CCcccCCCCeEEEeHHHHHHHhhhc---cccCccchHHHHHHHHHcCCCEEEEcee
Confidence 11100 00001 123333443 89999998774432 2348888877776665444455544333
No 26
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=62.15 E-value=5.6 Score=35.88 Aligned_cols=121 Identities=19% Similarity=0.158 Sum_probs=69.5
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHH--hCCcccCCCccCCCCc-ceeeeeecCCceeeeeeccCCCCCCCCCCCCc
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKK--HGLDISQPGLEPNNGL-TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPC 267 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~--~gLeISQPALd~~S~i-sh~iT~R~~~~~vhr~~~~~~g~C~~~~~ppc 267 (376)
+.||||++.|+|+.++...+.++..-... .|+-=+.|-..+..++ +.-...-. ..|..... ...=
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~---~~~~~~~~---------a~~~ 97 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFF---NFLPGVLQ---------ALGG 97 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHH---hHHHHHHH---------HhcC
Confidence 78999999999999988877777765544 3332222222222211 00000000 00100000 0011
Q ss_pred cceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEee
Q 017152 268 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 326 (376)
Q Consensus 268 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 326 (376)
++|+=.|+=.|+|++++..=.+ +.+.+...=||.++..+.....+|...... |.|+
T Consensus 98 ~~~~~G~~m~~rr~~L~~~GG~--~~l~~~ladD~~l~~~~~~~G~~v~~~~~~-v~~~ 153 (175)
T PF13506_consen 98 APFAWGGSMAFRREALEEIGGF--EALADYLADDYALGRRLRARGYRVVLSPYP-VVQT 153 (175)
T ss_pred CCceecceeeeEHHHHHHcccH--HHHhhhhhHHHHHHHHHHHCCCeEEEcchh-eeec
Confidence 5677788889999999865211 244445578999999887777788776643 4454
No 27
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=61.24 E-value=9.1 Score=36.84 Aligned_cols=91 Identities=10% Similarity=0.253 Sum_probs=50.7
Q ss_pred cCcchhchhhhhhc-----CcEEEEEEECCCCCcccccccCCcceEEEeeccccccccccccCcccccCccEEEEecccc
Q 017152 129 GLNQKKNIDRMVKK-----DFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDL 203 (376)
Q Consensus 129 G~~qk~~V~~~v~k-----~Fdv~LFhYDG~~~~w~d~~ws~~aihv~~~kqtKWw~akRfLHPdiv~~YDYIflwDDDL 203 (376)
.++....+.++|+. .-.=++..+-+...--...+|....+-|....+++=-.-.||+..+.+ .=|.|+..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i-~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEI-ETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT---SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCcccc-CcceEEEecCCc
Confidence 34444445555554 344344455442222122456666666666666665577888754433 479999999999
Q ss_pred cCCCCChHHHHHHHHHh
Q 017152 204 GVEHFNGDKYMELVKKH 220 (376)
Q Consensus 204 ~vd~f~i~ryf~Ivr~~ 220 (376)
.++..+++.-|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999888887744
No 28
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=58.97 E-value=5.2 Score=35.71 Aligned_cols=123 Identities=13% Similarity=-0.079 Sum_probs=63.9
Q ss_pred CccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccceE
Q 017152 192 AYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAFV 271 (376)
Q Consensus 192 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vhr~~~~~~g~C~~~~~ppcT~FV 271 (376)
.||||++.|+|..++.-.+.++++.++..+..+.++.......-..++.... ..... ........+. +...+ .++
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~--~~~~~-~~~ 158 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMC-YAEYK-GFFDIGMVSR--NERNA-IIQ 158 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHH-hHHHH-HHHHHHhccc--cccCc-eEE
Confidence 4999999999999999889998888876677666653222111000110000 00000 0000000000 00111 122
Q ss_pred EEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeE
Q 017152 272 EIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWI 323 (376)
Q Consensus 272 EiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~V 323 (376)
-..+-+|+|++++.+=.+ ..+. -+=|+.+..-+.....++..++...+
T Consensus 159 ~g~~~~~rr~~~~~iGgf-~~~~---~~eD~dl~~r~~~~G~~~~~~~~~~~ 206 (236)
T cd06435 159 HGTMCLIRRSALDDVGGW-DEWC---ITEDSELGLRMHEAGYIGVYVAQSYG 206 (236)
T ss_pred ecceEEEEHHHHHHhCCC-CCcc---ccchHHHHHHHHHCCcEEEEcchhhc
Confidence 222347999999987433 2222 14577776555445678888876544
No 29
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=56.93 E-value=39 Score=30.44 Aligned_cols=173 Identities=15% Similarity=0.176 Sum_probs=87.4
Q ss_pred cccccCCCCcccCCCCCeEEEEEecCcc--hhchhhhhhc----CcEEEEEEECCCCCcccccccCCcceEEEeeccccc
Q 017152 105 LRRLWGEPSEDLKKKPKYLLTITVGLNQ--KKNIDRMVKK----DFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKW 178 (376)
Q Consensus 105 ~~~lwg~p~~~~~~~~k~Lv~~~VG~~q--k~~V~~~v~k----~Fdv~LFhYDG~~~~w~d~~ws~~aihv~~~kqtKW 178 (376)
+|.-||++..-. ..+.-+.+-+|... ...++..+++ .=||+++.+ .|.+..+. -. ..-+-+|
T Consensus 6 IR~TW~~~~~~~--~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt--~K-----~~~~~~w 73 (195)
T PF01762_consen 6 IRETWGNQRNFK--GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLT--LK-----TLAGLKW 73 (195)
T ss_pred HHHHHhcccccC--CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhh--HH-----HHHHHHH
Confidence 467788776422 24566677778766 4456776766 347877655 23332221 00 0111122
Q ss_pred cccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCce--eeeeeccCC
Q 017152 179 WYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQE--VHKVTEEKP 256 (376)
Q Consensus 179 w~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~--vhr~~~~~~ 256 (376)
- .... .+++||+..|||+-| ++.++++..++.-.+...+.+.. ......-..|.+..+ +....+
T Consensus 74 ~--~~~c-----~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g-~~~~~~~~~r~~~~kw~v~~~~y--- 139 (195)
T PF01762_consen 74 A--SKHC-----PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYG-GCIKNGPPIRDPSSKWYVSEEEY--- 139 (195)
T ss_pred H--HhhC-----CchhheeecCcEEEE---ehHHhhhhhhhcccCcccccccc-ccccCCccccccccCceeeeeec---
Confidence 2 1111 358999999999988 55666666665522222222211 111111122222222 111000
Q ss_pred CCCCCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcC
Q 017152 257 GWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEP 310 (376)
Q Consensus 257 g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~ 310 (376)
+....||+ ....+-++|+++.+.+....+ ....-+-=|-.++.|++.
T Consensus 140 ---~~~~yP~y---~~G~~yvls~~~v~~i~~~~~-~~~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 140 ---PDDYYPPY---CSGGGYVLSSDVVKRIYKASS-HTPFFPLEDVFIGILAEK 186 (195)
T ss_pred ---ccccCCCc---CCCCeEEecHHHHHHHHHHhh-cCCCCCchHHHHHHHHHH
Confidence 11234443 346778999999988876543 332233334445888864
No 30
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=56.55 E-value=28 Score=29.42 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=20.8
Q ss_pred cCccEEEEecccccCCCCChHHHHHHH
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELV 217 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Iv 217 (376)
+.+|||+++|+|..++...+.++++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 579999999999988766566655543
No 31
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=54.98 E-value=7.3 Score=37.43 Aligned_cols=122 Identities=17% Similarity=0.081 Sum_probs=54.2
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeeeeeccCCCCCCCCCCCCccce
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAF 270 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vhr~~~~~~g~C~~~~~ppcT~F 270 (376)
..+||+++.|||..| +++++.++...|+- +||-.=...+..++++.-..... . .....+-.|
T Consensus 85 ~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~~--~~~~yiG~~~~~~~~~~~~~~~~-~------------~~~~~~~~f 146 (252)
T PF02434_consen 85 SDKDWFCFADDDTYV---NVENLRRLLSKYDP--SEPIYIGRPSGDRPIEIIHRFNP-N------------KSKDSGFWF 146 (252)
T ss_dssp HT-SEEEEEETTEEE----HHHHHHHHTTS-T--TS--EEE-EE-----------------------------------E
T ss_pred CCceEEEEEeCCcee---cHHHHHHHHhhCCC--ccCEEeeeeccCccceeeccccc-c------------ccCcCceEe
Confidence 468999999999987 67777777766542 34432111112222221100000 0 001112345
Q ss_pred EEEec-ccccHHHHHHhh--h----hhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEeecCCCCC
Q 017152 271 VEIMA-PVFSREAWRCVW--H----MIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQVIPSLG 332 (376)
Q Consensus 271 VEiMA-PVFSR~Awrcvw--~----miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~g~PtLg 332 (376)
.-..| -|+||.+.+.+- . +.+.+..-.+.=|..+++|++. .-+|=.+++ .-.|.-+|.|.
T Consensus 147 ~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~-~lgv~lt~s-~~fhs~~~~l~ 213 (252)
T PF02434_consen 147 ATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN-LLGVPLTHS-PLFHSHLENLQ 213 (252)
T ss_dssp E-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH-TT---EEE--TT---SSS-GG
T ss_pred eCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh-cCCcceeec-hhhcccCcccc
Confidence 55555 389999998772 2 2223333356789999999974 123444444 45677677764
No 32
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=54.37 E-value=4.6 Score=32.31 Aligned_cols=17 Identities=35% Similarity=1.028 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhheeEee
Q 017152 19 LIITTFIGVLIGYFVGR 35 (376)
Q Consensus 19 ~~~~~~~~~~~g~~~g~ 35 (376)
+|++.++|++.|||++-
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57888999999999863
No 33
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.12 E-value=23 Score=30.97 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=30.7
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCcc
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLE 230 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd 230 (376)
+.+|||++.|+|..++...+++++......+..++.+...
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 110 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLR 110 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEee
Confidence 4589999999999999888888877666666655555443
No 34
>PRK10073 putative glycosyl transferase; Provisional
Probab=50.21 E-value=30 Score=34.14 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=57.8
Q ss_pred CCeEEEEEecCcchhch----hhhhhc---CcEEEEEEECCCCCcccc--cccCC--cceEEEe-eccccccccccccCc
Q 017152 120 PKYLLTITVGLNQKKNI----DRMVKK---DFQIMLFHYDGQTSQWDE--FEWSK--SAIHVSI-RRQTKWWYAKRFLHP 187 (376)
Q Consensus 120 ~k~Lv~~~VG~~qk~~V----~~~v~k---~Fdv~LFhYDG~~~~w~d--~~ws~--~aihv~~-~kqtKWw~akRfLHP 187 (376)
|+.-|++++ ++....+ +.+++. +|.|++ .=||++|+=.+ -+|.+ ..++|.. .+++. +...-.-
T Consensus 6 p~vSVIIP~-yN~~~~L~~~l~Sl~~Qt~~~~EIIi-VdDgStD~t~~i~~~~~~~~~~i~vi~~~n~G~---~~arN~g 80 (328)
T PRK10073 6 PKLSIIIPL-YNAGKDFRAFMESLIAQTWTALEIII-VNDGSTDNSVEIAKHYAENYPHVRLLHQANAGV---SVARNTG 80 (328)
T ss_pred CeEEEEEec-cCCHHHHHHHHHHHHhCCCCCeEEEE-EeCCCCccHHHHHHHHHhhCCCEEEEECCCCCh---HHHHHHH
Confidence 456677777 3333343 333333 777776 55887753111 11211 1233322 23322 1111111
Q ss_pred ccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccC
Q 017152 188 DVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQ 226 (376)
Q Consensus 188 div~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ 226 (376)
=-.+.-|||++.|.|-.++...++++++.+++.++++..
T Consensus 81 l~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 81 LAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 112578999999999989888888999988888777754
No 35
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=44.77 E-value=17 Score=28.22 Aligned_cols=22 Identities=23% Similarity=0.077 Sum_probs=19.3
Q ss_pred CccEEEEecccccCCCCChHHH
Q 017152 192 AYEYIFIWDEDLGVEHFNGDKY 213 (376)
Q Consensus 192 ~YDYIflwDDDL~vd~f~i~ry 213 (376)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 6999999999999888777776
No 36
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=44.68 E-value=12 Score=29.84 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=26.3
Q ss_pred CccEEEEecccccCCCCChHHH-HHHHHHhCCcccCCCc
Q 017152 192 AYEYIFIWDEDLGVEHFNGDKY-MELVKKHGLDISQPGL 229 (376)
Q Consensus 192 ~YDYIflwDDDL~vd~f~i~ry-f~Ivr~~gLeISQPAL 229 (376)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 7999999999998887777777 3434444444444444
No 37
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=43.52 E-value=30 Score=33.06 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=23.3
Q ss_pred cCccEEEEecccccCCCCChHHHHH
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYME 215 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~ 215 (376)
+.-|||+++|-|+.++...++++++
T Consensus 87 A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 87 ARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 6899999999999999888888888
No 38
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=42.89 E-value=66 Score=32.91 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=54.2
Q ss_pred CCeEEEEEecCcchhchhhhhh----c---CcEEEEEEECCCCCccccc--ccCC--cceEEEe--eccccccccccccC
Q 017152 120 PKYLLTITVGLNQKKNIDRMVK----K---DFQIMLFHYDGQTSQWDEF--EWSK--SAIHVSI--RRQTKWWYAKRFLH 186 (376)
Q Consensus 120 ~k~Lv~~~VG~~qk~~V~~~v~----k---~Fdv~LFhYDG~~~~w~d~--~ws~--~aihv~~--~kqtKWw~akRfLH 186 (376)
|+.-|.+++=-.. ..+.+.++ . +++|++ .=||+.|+..+. ++.. ..+++.. .+++|=.-.+.-+
T Consensus 75 p~vsViIP~yNE~-~~i~~~l~sll~q~yp~~eIiv-VdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl- 151 (444)
T PRK14583 75 PLVSILVPCFNEG-LNARETIHAALAQTYTNIEVIA-INDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGA- 151 (444)
T ss_pred CcEEEEEEeCCCH-HHHHHHHHHHHcCCCCCeEEEE-EECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHH-
Confidence 4566666664333 33443333 2 788776 558887764321 1111 1233333 4556532222111
Q ss_pred cccccCccEEEEecccccCCCCChHHHHHHHHH
Q 017152 187 PDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKK 219 (376)
Q Consensus 187 Pdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~ 219 (376)
..+.||||.+.|.|-.++...+.++.+-+.+
T Consensus 152 --~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 152 --AAARSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred --HhCCCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 2267999999999999988888888776543
No 39
>PRK01844 hypothetical protein; Provisional
Probab=42.28 E-value=9.4 Score=31.29 Aligned_cols=15 Identities=27% Similarity=0.860 Sum_probs=11.4
Q ss_pred HHHHHHHHHhheeEe
Q 017152 20 IITTFIGVLIGYFVG 34 (376)
Q Consensus 20 ~~~~~~~~~~g~~~g 34 (376)
|++.++|++.|||++
T Consensus 11 I~~li~G~~~Gff~a 25 (72)
T PRK01844 11 VVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777888888875
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=41.87 E-value=20 Score=30.90 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=29.5
Q ss_pred cCccEEEEecccccCCCCChHHHHHHH-HHhCCcccCC
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELV-KKHGLDISQP 227 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Iv-r~~gLeISQP 227 (376)
+.+|||++.|+|..++...++++++.+ +..+..+..+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 568999999999999888889999887 4455555543
No 41
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.03 E-value=21 Score=31.14 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=28.3
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCC
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQP 227 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQP 227 (376)
+.+|||++.|+|..++.-.++++++.+.+.+-...+.
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~ 117 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAG 117 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEee
Confidence 5799999999999998888888888666555444333
No 42
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=36.55 E-value=32 Score=31.22 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=29.4
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHh--CCcccCCC
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH--GLDISQPG 228 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~--gLeISQPA 228 (376)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 678999999999999988888888877643 34444543
No 43
>PRK11677 hypothetical protein; Provisional
Probab=34.21 E-value=15 Score=33.00 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhheeEeeee
Q 017152 19 LIITTFIGVLIGYFVGRSF 37 (376)
Q Consensus 19 ~~~~~~~~~~~g~~~g~s~ 37 (376)
.++..++|+++|||+|-..
T Consensus 6 a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3556667777777777543
No 44
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.20 E-value=19 Score=39.38 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=45.3
Q ss_pred hhhhhhc-CcEEEEEEECCCCCcccccccCCcceEEEeeccccccccccccCcccccCccEEEEecccccCCCCChHHHH
Q 017152 136 IDRMVKK-DFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYM 214 (376)
Q Consensus 136 V~~~v~k-~Fdv~LFhYDG~~~~w~d~~ws~~aihv~~~kqtKWw~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf 214 (376)
+|..+-. =--|.+|.|-.+++. |+.=-.-+-|+-.+.|-..-..-++||--+.+.|||++|--||..|++|-.-|++
T Consensus 42 ~NrT~ahhvprv~~F~~~~~i~~--~~a~~~~vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~ 119 (681)
T KOG3708|consen 42 INRTLAHHVPRVHLFADSSRIDN--DLAQLTNVSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLI 119 (681)
T ss_pred HHHHHHhhcceeEEeeccccccc--cHhhccccCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHH
Confidence 3444443 234777887766553 2211112222222222222233345665678999999999999999988776666
Q ss_pred HH
Q 017152 215 EL 216 (376)
Q Consensus 215 ~I 216 (376)
.-
T Consensus 120 ~h 121 (681)
T KOG3708|consen 120 DH 121 (681)
T ss_pred hh
Confidence 43
No 45
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=33.99 E-value=38 Score=33.88 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=29.5
Q ss_pred ccEEEEecccccCCCCChHHHHHHHHHhCCccc
Q 017152 193 YEYIFIWDEDLGVEHFNGDKYMELVKKHGLDIS 225 (376)
Q Consensus 193 YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeIS 225 (376)
+|||++.|.|..++...++++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 46
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=33.26 E-value=30 Score=31.42 Aligned_cols=53 Identities=23% Similarity=0.498 Sum_probs=37.3
Q ss_pred cccccccccCcccccCccEEEEecccc-------cCCCCCh-----------HHHHHHHHHhCCcccCCCccCCCCc
Q 017152 177 KWWYAKRFLHPDVVAAYEYIFIWDEDL-------GVEHFNG-----------DKYMELVKKHGLDISQPGLEPNNGL 235 (376)
Q Consensus 177 KWw~akRfLHPdiv~~YDYIflwDDDL-------~vd~f~i-----------~ryf~Ivr~~gLeISQPALd~~S~i 235 (376)
-=|+++||+-|+ =+++|+.++.+ +...|++ -.|=-++++||| .+|||..=..|
T Consensus 14 c~WLIrRFIDp~----A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~la~I 84 (135)
T PF09828_consen 14 CPWLIRRFIDPE----AEFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALARLAAI 84 (135)
T ss_pred CHHHHHHhcCCC----ceEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHHHHHH
Confidence 358999999887 56788888772 2223443 346678899999 89999664433
No 47
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=32.82 E-value=1.1e+02 Score=34.08 Aligned_cols=172 Identities=18% Similarity=0.330 Sum_probs=87.3
Q ss_pred cCccccc----ccccCCCCcccCCCCCeEEEEEecCcchhchhhhhhc---Cc-EEEEEEECCCCCcccccccCCcceEE
Q 017152 99 SESDFFL----RRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKK---DF-QIMLFHYDGQTSQWDEFEWSKSAIHV 170 (376)
Q Consensus 99 ~~sd~~~----~~lwg~p~~~~~~~~k~Lv~~~VG~~qk~~V~~~v~k---~F-dv~LFhYDG~~~~w~d~~ws~~aihv 170 (376)
+-.+++. |.=||+...- ...+..+.+-+|......+++.+++ .| ||++..|- |.++.+-+ ..+
T Consensus 394 ap~nf~rR~AIR~TWg~~~~~--~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~---DsY~NLTl--Ktl-- 464 (636)
T PLN03133 394 TANNFKRRMAVRRTWMQYDAV--RSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFV---DYYSLITW--KTL-- 464 (636)
T ss_pred CcccHHHHHHHHHhhcccccc--CCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeee---chhhhhHH--HHH--
Confidence 3345544 6779974321 1223455577787665667888876 33 88887763 32222110 011
Q ss_pred EeeccccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeecCCceeee
Q 017152 171 SIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHK 250 (376)
Q Consensus 171 ~~~kqtKWw~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT~R~~~~~vhr 250 (376)
-..||-. . . ...+||+-.|||+-|.. .++++..++.. .++ .| ++ .-.. .+...+|
T Consensus 465 ----~~~~wa~-~--c----~~akFilK~DDDvFVnv---~~Ll~~L~~~~--~~~-~L----y~--G~v~--~~~~PiR 519 (636)
T PLN03133 465 ----AICIFGT-E--V----VSAKYVMKTDDDAFVRV---DEVLASLKRTN--VSH-GL----LY--GLIN--SDSQPHR 519 (636)
T ss_pred ----HHHHHHH-h--C----CCceEEEEcCCceEEcH---HHHHHHHHhcC--CCC-ce----EE--EEec--cCCCccc
Confidence 0123322 1 2 25899999999999954 45555544321 111 11 11 1000 0111111
Q ss_pred eeccCCCCC-C-----CCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchHh-HHhhHhhc
Q 017152 251 VTEEKPGWC-S-----DPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLD-FALRRCVE 309 (376)
Q Consensus 251 ~~~~~~g~C-~-----~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLD-f~~~~c~~ 309 (376)
. ....|. + ....||| +-.++-|+|++..+.+....+...+.=+.+| -..+.|+.
T Consensus 520 d--~~sKWYVs~~eyp~~~YPpY---asG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~ 580 (636)
T PLN03133 520 N--PDSKWYISPEEWPEETYPPW---AHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIA 580 (636)
T ss_pred C--CCCCCCCCHHHCCCCCCCCC---CCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHH
Confidence 0 011121 1 2345665 4577889999999887655432233445565 56677874
No 48
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.28 E-value=16 Score=31.98 Aligned_cols=19 Identities=37% Similarity=0.817 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhheeEeeee
Q 017152 19 LIITTFIGVLIGYFVGRSF 37 (376)
Q Consensus 19 ~~~~~~~~~~~g~~~g~s~ 37 (376)
.|+..++|+++||+++-.+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3677888888888887544
No 49
>PRK00523 hypothetical protein; Provisional
Probab=32.15 E-value=17 Score=29.82 Aligned_cols=15 Identities=47% Similarity=0.848 Sum_probs=11.0
Q ss_pred HHHHHHHHHhheeEe
Q 017152 20 IITTFIGVLIGYFVG 34 (376)
Q Consensus 20 ~~~~~~~~~~g~~~g 34 (376)
|+..++|++.|||++
T Consensus 12 i~~li~G~~~Gffia 26 (72)
T PRK00523 12 IPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777788888875
No 50
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=30.81 E-value=19 Score=31.39 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=21.1
Q ss_pred CCCCCcchH---HHHHHHHH--HHhheeEeeeecc
Q 017152 10 LKKTNDGGR---LIITTFIG--VLIGYFVGRSFQS 39 (376)
Q Consensus 10 ~~~~~~~~~---~~~~~~~~--~~~g~~~g~s~p~ 39 (376)
.-||+-+.+ +|+.+++. +++|+|+|++|=+
T Consensus 8 ~~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 8 EVKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357777777 44444444 6789999999844
No 51
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=26.03 E-value=33 Score=27.32 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=13.9
Q ss_pred cccccCccEEEEeccc
Q 017152 187 PDVVAAYEYIFIWDED 202 (376)
Q Consensus 187 Pdiv~~YDYIflwDDD 202 (376)
..+...|||||++|.+
T Consensus 13 ~~i~~~~~~iFt~D~~ 28 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS 28 (79)
T ss_pred hhhCCCCCEEEEECHH
Confidence 4778899999999986
No 52
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=24.85 E-value=70 Score=27.65 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=24.9
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHH
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKK 219 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~ 219 (376)
+.||||++.|.|..++...+.++.+.+..
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 46999999999999998888888877653
No 53
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=24.78 E-value=50 Score=26.02 Aligned_cols=40 Identities=13% Similarity=0.337 Sum_probs=33.3
Q ss_pred CCCeEEEEEecCcchhchhhhhhcCcEEEEEEECCCCCccc
Q 017152 119 KPKYLLTITVGLNQKKNIDRMVKKDFQIMLFHYDGQTSQWD 159 (376)
Q Consensus 119 ~~k~Lv~~~VG~~qk~~V~~~v~k~Fdv~LFhYDG~~~~w~ 159 (376)
.+++.|....|..+......+.+..|+.+ +.++|-.+.|.
T Consensus 61 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~-~~l~gG~~~w~ 100 (110)
T COG0607 61 DDPIVVYCASGVRSAAAAAALKLAGFTNV-YNLDGGIDAWK 100 (110)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHcCCccc-cccCCcHHHHH
Confidence 46799999999988777777777788888 88889888884
No 54
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.63 E-value=20 Score=33.38 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=12.0
Q ss_pred HHHHHHHHHhheeEeeee
Q 017152 20 IITTFIGVLIGYFVGRSF 37 (376)
Q Consensus 20 ~~~~~~~~~~g~~~g~s~ 37 (376)
|+++++|+++|+++|..+
T Consensus 3 ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566667777777776554
No 55
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=22.58 E-value=56 Score=32.54 Aligned_cols=125 Identities=11% Similarity=0.025 Sum_probs=63.9
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCC---CCcceeeeeecCCceeeeeeccCCCCCCCCCCCCc
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPN---NGLTWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPC 267 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~---S~ish~iT~R~~~~~vhr~~~~~~g~C~~~~~ppc 267 (376)
+.||||.+.|.|..++..-+.+..+-++..+..+.+-..... +..+.-.+ ..-..... ++........++
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~-~~~~~~~~------~~~~~~~~~~~~ 197 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGA-MGINHNFL------PSVMVARALGRA 197 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHH-HHhhhhhh------HHHHHHHhccCC
Confidence 689999999999999888888887777655555544321110 00000000 00000000 000000000000
Q ss_pred cceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCCCCcEEEEeeeeEEee
Q 017152 268 AAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVVDSQWIIHQ 326 (376)
Q Consensus 268 T~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~~~kiGVVDa~~VvH~ 326 (376)
.|+-..+=+|+|++++.+=.+ ++..+..+=|+.+.+-+.....++.+.+.. +.|+
T Consensus 198 -~~~~G~~~a~RR~~l~~iGGf--~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~-v~~~ 252 (373)
T TIGR03472 198 -RFCFGATMALRRATLEAIGGL--AALAHHLADDYWLGELVRALGLRVVLAPVV-VDTD 252 (373)
T ss_pred -ccccChhhheeHHHHHHcCCh--HHhcccchHHHHHHHHHHHcCCeEEecchh-hhcC
Confidence 121122236899999877433 122233456888877776667888877654 5554
No 56
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=22.07 E-value=65 Score=31.83 Aligned_cols=98 Identities=19% Similarity=0.306 Sum_probs=57.4
Q ss_pred CCeEEEEEecCcchhchhhhhhc----------CcEEEEEEECCCCCccccc--cc----CCcceEEE-eeccccccccc
Q 017152 120 PKYLLTITVGLNQKKNIDRMVKK----------DFQIMLFHYDGQTSQWDEF--EW----SKSAIHVS-IRRQTKWWYAK 182 (376)
Q Consensus 120 ~k~Lv~~~VG~~qk~~V~~~v~k----------~Fdv~LFhYDG~~~~w~d~--~w----s~~aihv~-~~kqtKWw~ak 182 (376)
++.-|.+|+ +++..++.++++. +|.|++ .=||+.|+-.+. ++ ..+.+++. .++.+|..-.+
T Consensus 6 ~~vSVVIP~-yNE~~~i~~~l~~l~~~~~~~~~~~EIIv-VDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~ 83 (325)
T PRK10714 6 KKVSVVIPV-YNEQESLPELIRRTTAACESLGKEYEILL-IDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIM 83 (325)
T ss_pred CeEEEEEcc-cCchhhHHHHHHHHHHHHHhCCCCEEEEE-EeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHH
Confidence 344555554 5555555554432 567654 678887764332 11 12233332 34445443222
Q ss_pred c-ccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcc
Q 017152 183 R-FLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDI 224 (376)
Q Consensus 183 R-fLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeI 224 (376)
. +.| +.+|||++.|.|+..+...+.++++.++ .|.++
T Consensus 84 ~G~~~----A~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~Dv 121 (325)
T PRK10714 84 AGFSH----VTGDLIITLDADLQNPPEEIPRLVAKAD-EGYDV 121 (325)
T ss_pred HHHHh----CCCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCE
Confidence 1 222 5799999999999999999999999875 34443
No 57
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=21.58 E-value=51 Score=27.51 Aligned_cols=44 Identities=34% Similarity=0.544 Sum_probs=34.4
Q ss_pred ccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCc
Q 017152 182 KRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGL 229 (376)
Q Consensus 182 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPAL 229 (376)
..|+||.+.++--.|||+-|++|+.... ++-.++.|+.||.-+-
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~gA 77 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEGA 77 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCCe
Confidence 4589999999999999999999997644 4455666777765443
No 58
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=21.23 E-value=60 Score=27.39 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=27.4
Q ss_pred CccEEEEecccccCCCCChHHHHHHHHHhCCcccCC
Q 017152 192 AYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQP 227 (376)
Q Consensus 192 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQP 227 (376)
.-|||.+.|+|..++...++++++.+.+.+..+.+.
T Consensus 79 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 79 RGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 349999999999888877888888766655555443
No 59
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=21.04 E-value=4.5e+02 Score=26.61 Aligned_cols=180 Identities=16% Similarity=0.193 Sum_probs=92.8
Q ss_pred cceecCccccc----ccccCCCCc--ccCCCCCeEEEEEecCcchhchhhhhhc----CcEEEEEEECCCCCcccccccC
Q 017152 95 GIVVSESDFFL----RRLWGEPSE--DLKKKPKYLLTITVGLNQKKNIDRMVKK----DFQIMLFHYDGQTSQWDEFEWS 164 (376)
Q Consensus 95 giv~~~sd~~~----~~lwg~p~~--~~~~~~k~Lv~~~VG~~qk~~V~~~v~k----~Fdv~LFhYDG~~~~w~d~~ws 164 (376)
+|-....++.. |+=||++.. ....+...||+++..-. .+++.|.+ .-||+.-.|..+.. .+.+
T Consensus 100 ~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~---~~~~~l~~Ea~~ygDIi~~df~Dty~---nltl- 172 (349)
T KOG2287|consen 100 LVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNED---KLNKLLADEARLYGDIIQVDFEDTYF---NLTL- 172 (349)
T ss_pred EEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHH---HHHHHHHHHHHHhCCEEEEecccchh---chHH-
Confidence 45556667765 678998876 22223334444443321 44666665 88999877744322 1110
Q ss_pred CcceEEEeeccccccccccccCcccccCccEEEEecccccCCCCChHHHHHHHHHhCCcccCCCccCCCCcceeee----
Q 017152 165 KSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMT---- 240 (376)
Q Consensus 165 ~~aihv~~~kqtKWw~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~S~ish~iT---- 240 (376)
|==...++.. .-..+++||.=.|||+-+ +++.+++..++.. +|+= +.++=+-++
T Consensus 173 ------------Ktl~~l~w~~-~~cp~akfi~K~DDDvfv---~~~~L~~~L~~~~----~~~~--~~~~G~v~~~~~p 230 (349)
T KOG2287|consen 173 ------------KTLAILLWGV-SKCPDAKFILKIDDDVFV---NPDNLLEYLDKLN----DPSS--DLYYGRVIQNAPP 230 (349)
T ss_pred ------------HHHHHHHHHH-hcCCcceEEEeccCceEE---cHHHHHHHHhccC----CCCc--ceEEEeecccCCC
Confidence 1101111110 001279999999999987 4556666666655 1111 111111111
Q ss_pred eecCCceeeeeeccCCCCCCCCCCCCccceEEEecccccHHHHHHhhhhhcCCCcccchHhHHhhHhhcCC
Q 017152 241 KRRGDQEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPA 311 (376)
Q Consensus 241 ~R~~~~~vhr~~~~~~g~C~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqnDLvhGWGLDf~~~~c~~~~ 311 (376)
.|.+.++-. +-+..-.| +..|| |+=.|.-|+|+++-+.+... ...+..-|-=|-.++-|++..
T Consensus 231 ~R~~~~Kwy--Vp~~~y~~--~~YP~---Y~sG~gYvis~~~a~~l~~~-s~~~~~~~iEDV~~g~~l~~~ 293 (349)
T KOG2287|consen 231 IRDKTSKWY--VPESEYPC--SVYPP---YASGPGYVISGDAARRLLKA-SKHLKFFPIEDVFVGGCLAED 293 (349)
T ss_pred CCCCCCCCc--cCHHHCCC--CCCCC---cCCCceeEecHHHHHHHHHH-hcCCCccchHHHHHHHHHHHh
Confidence 111111100 00000012 12333 34466779999999888774 456666676678889998753
No 60
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.81 E-value=66 Score=32.79 Aligned_cols=40 Identities=28% Similarity=0.733 Sum_probs=24.8
Q ss_pred cccccCCCCcccCCCCCeEEEEEecCcchhchhhhhhc----CcEEEE-EEECCCCCcccc
Q 017152 105 LRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKK----DFQIML-FHYDGQTSQWDE 160 (376)
Q Consensus 105 ~~~lwg~p~~~~~~~~k~Lv~~~VG~~qk~~V~~~v~k----~Fdv~L-FhYDG~~~~w~d 160 (376)
.-|+|-+|.. -|....+.+-++.|+ .+.||| |||. |-|.|
T Consensus 42 RlRvwv~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHYS---D~WaD 86 (332)
T PF07745_consen 42 RLRVWVNPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYS---DFWAD 86 (332)
T ss_dssp EEEE-SS-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SS---SS--B
T ss_pred EEEeccCCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeeccc---CCCCC
Confidence 3488998865 688788887777775 888887 8994 35544
No 61
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=20.56 E-value=64 Score=30.91 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=29.9
Q ss_pred cCccEEEEecccccCCCCChHHHHHHHH-HhCCcccC
Q 017152 191 AAYEYIFIWDEDLGVEHFNGDKYMELVK-KHGLDISQ 226 (376)
Q Consensus 191 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr-~~gLeISQ 226 (376)
+.||||.+.|-|..++...+.+.++.+. .-++-+.|
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq 130 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQ 130 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 6899999999999999999999998875 44555554
No 62
>PLN02867 Probable galacturonosyltransferase
Probab=20.37 E-value=42 Score=36.52 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=29.2
Q ss_pred ccccCcccccCccEEEEecccccCCCCChHHHHHH
Q 017152 182 KRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMEL 216 (376)
Q Consensus 182 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~I 216 (376)
.||+=|+++.++|-|...|+|+-|.. ++..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 35566999999999999999999987 88888776
Done!