BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017153
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
Length = 331
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/324 (46%), Positives = 206/324 (63%), Gaps = 9/324 (2%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
+E L VL R+FP +++ AS RSAG +L+F+ + VE L E VD+ L SAGG
Sbjct: 14 REILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGPLP-VDLVLASAGGG 72
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
IS+ + E G++VVDNSSA+R VPLV+PEVN E K+ +G +IANPNC+
Sbjct: 73 ISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNRE-----KIFQHRG-IIANPNCT 126
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQ 232
T I MA PLHR + R++V+TYQ MEEL +T L G+ P + F+
Sbjct: 127 TAILAMALWPLHRAFQAKRVIVATYQAASGAGAKAMEELLTETHRFLHGEAPKAEAFAHP 186
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQF 292
FN+ H ENGY EEMK+V ET KI+ D +R++AT +RVP +RAHAE+V+++F
Sbjct: 187 LPFNVIPHIDAFQENGYTREEMKVVWETHKIFGDDTIRISATAVRVPTLRAHAEAVSVEF 246
Query: 293 EKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLD 352
+P+ + AR++LK APGV V+D+ + +P PL S K DV VGRIR+ ++ + +GLD
Sbjct: 247 ARPVTPEAAREVLKEAPGVEVVDEPEAKRYPMPLTASGKWDVEVGRIRKSLAFE--NGLD 304
Query: 353 IFVCGDQVRKGAALNAVQIAEMLL 376
FV GDQ+ KGAALNAVQIAE L
Sbjct: 305 FFVVGDQLLKGAALNAVQIAEEWL 328
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 201/322 (62%), Gaps = 10/322 (3%)
Query: 56 LSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115
L VL +R+FP + +LAS+RS GK F K V+ + E + V IALFSAGG +S
Sbjct: 20 LEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSA 79
Query: 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175
K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ + +IANPNCSTI
Sbjct: 80 KWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR----NRNIIANPNCSTIQ 135
Query: 176 CLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAF 235
L+A P++ + R+ V+TYQ ++EL QT ++L G P FSQQ AF
Sbjct: 136 MLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAF 195
Query: 236 NLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKP 295
N ++NGY +EEMKMV ET+KI+ND + V TC+RVPV HAE+V+++ P
Sbjct: 196 NCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAP 255
Query: 296 LDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIRRDVSQDGNHGLDIF 354
+D + D+L+ G+ + R ++ FPT + + KD V VGR+R D+S + G++++
Sbjct: 256 IDAEQVMDMLEQTDGIELF--RGAD-FPTQVRDAGGKDHVLVGRVRNDISH--HSGINLW 310
Query: 355 VCGDQVRKGAALNAVQIAEMLL 376
V D VRKGAA NAVQIAE+L+
Sbjct: 311 VVADNVRKGAATNAVQIAELLV 332
>pdb|2R00|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 260 bits (665), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 140/322 (43%), Positives = 200/322 (62%), Gaps = 10/322 (3%)
Query: 56 LSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115
L VL +R+FP + +LAS+RS GK F K V+ + E + V IALFSAGG +S
Sbjct: 20 LEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSA 79
Query: 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175
K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ + +IANPN STI
Sbjct: 80 KWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR----NRNIIANPNXSTIQ 135
Query: 176 CLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAF 235
L+A P++ + R+ V+TYQ ++EL QT ++L G P FSQQ AF
Sbjct: 136 MLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAF 195
Query: 236 NLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKP 295
N ++NGY +EEMKMV ET+KI+ND + V TC+RVPV HAE+V+++ P
Sbjct: 196 NCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAP 255
Query: 296 LDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIRRDVSQDGNHGLDIF 354
+D + D+L+ G+ + R ++ FPT + + KD V VGR+R D+S + G++++
Sbjct: 256 IDAEQVMDMLEQTDGIELF--RGAD-FPTQVRDAGGKDHVLVGRVRNDISH--HSGINLW 310
Query: 355 VCGDQVRKGAALNAVQIAEMLL 376
V D VRKGAA NAVQIAE+L+
Sbjct: 311 VVADNVRKGAATNAVQIAELLV 332
>pdb|2GYY|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GYY|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae
pdb|2GZ1|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ1|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (asadh)
From Streptococcus Pneumoniae Complexed With Nadp
pdb|2GZ2|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ2|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With 2',5'-Adp
pdb|2GZ3|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|B Chain B, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|C Chain C, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|2GZ3|D Chain D, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh)
From Streptococcus Pneumoniae Complexed With Nadp And
Aspartate- Semialdehyde
pdb|3PWK|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWK|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PWS|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
2',5'-Adenosine Diphosphate And D-2- Aminoadipate
pdb|3PYL|A Chain A, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|B Chain B, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|C Chain C, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYL|D Chain D, Crystal Structure Of Aspartate Beta-Semialdehide
Dehydrogenase From Streptococcus Pneumoniae With
D-2,3-Diaminopropionate
pdb|3PYX|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PYX|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And 2-Aminoterephthalate
pdb|3PZB|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3PZB|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase Complex With Nadp And
D-2,3-Diaminopropionate
pdb|3Q11|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q11|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With Nadp
And Aspartyl Beta- Difluorophosphonate
pdb|3Q1L|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|C Chain C, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
pdb|3Q1L|D Chain D, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Streptococcus Pneumoniae With
Cysteamine Bound Covalently To Cys 128
Length = 366
Score = 238 bits (608), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 190/333 (57%), Gaps = 19/333 (5%)
Query: 54 EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113
+ + +L + P I+ LAS RSAGK L F+D+ T+EE TE +F+GVDIALFSAG S
Sbjct: 17 QMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST 76
Query: 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173
S K+ P AV+ G +VVDN+S FR +VPLV+PEVN A+ +IA PNCST
Sbjct: 77 SAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALD------AHNGIIACPNCST 130
Query: 174 IICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQ-- 231
I ++A P+ ++ + R++VSTYQ + E + + REVL C + ++
Sbjct: 131 IQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEIL 190
Query: 232 -------QY--AFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMR 282
Y AFN +N Y EEMKM KET+KI D + V+ATC+R+PV+
Sbjct: 191 PSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLS 250
Query: 283 AHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRD 342
AH+ESV ++ ++ + + + PG V+ DD A +P + D VGRIR+D
Sbjct: 251 AHSESVYIETKEVAPIEEVKAAIAAFPGAVLEDDVAHQIYPQAINAVGSRDTFVGRIRKD 310
Query: 343 VSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375
+ D G+ ++V D + KGAA N+VQIAE L
Sbjct: 311 L--DAEKGIHMWVVSDNLLKGAAWNSVQIAETL 341
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 188/336 (55%), Gaps = 23/336 (6%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
Q ++L +RDFP +++ AS RS G++L+F+ + VE+ G+DIALFSAG +
Sbjct: 33 QVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSA 92
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+SK P G V+DNSSA+R +VPLV+ EVN E + + KG +IANPNC+
Sbjct: 93 MSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRRP---KG-IIANPNCT 148
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKP--------- 223
T+ + LH A++ R+VVS+YQ + EL Q R V+ G
Sbjct: 149 TMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGGAEQLVYDGGAL 208
Query: 224 --PTCKIFSQQYAFNLFSHNAPVLENGYNE--EEMKMVKETRKIWNDKDVRVTATCIRVP 279
P + AFN+ ++++G E E+ K+ E+RKI D+ V+ TC+RVP
Sbjct: 209 EFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILGIPDLLVSGTCVRVP 268
Query: 280 VMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRI 339
V H+ S+N +F +PL + AR++L A GV ++D PTPL + D+ VGRI
Sbjct: 269 VFTGHSLSINAEFAQPLSPERARELLDGATGVQLVD------VPTPLAAAGVDESLVGRI 322
Query: 340 RRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375
RRD GL +FV GD +RKGAALN +QIAE+L
Sbjct: 323 RRDPGVPDGRGLALFVSGDNLRKGAALNTIQIAELL 358
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 188/336 (55%), Gaps = 23/336 (6%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
Q ++L +RDFP +++ AS RS G++L+F+ + VE+ G+DIALFSAG +
Sbjct: 15 QVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSA 74
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+SK P G V+DNSSA+R +VPLV+ EVN E + + KG +IANPNC+
Sbjct: 75 MSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRRP---KG-IIANPNCT 130
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKP--------- 223
T+ + LH A++ R+VVS+YQ + EL Q R V+ G
Sbjct: 131 TMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGGAEQLVYDGGAL 190
Query: 224 --PTCKIFSQQYAFNLFSHNAPVLENGYNE--EEMKMVKETRKIWNDKDVRVTATCIRVP 279
P + AFN+ ++++G E E+ K+ E+RKI D+ V+ TC+RVP
Sbjct: 191 EFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILGIPDLLVSGTCVRVP 250
Query: 280 VMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRI 339
V H+ S+N +F +PL + AR++L A GV ++D PTPL + D+ VGRI
Sbjct: 251 VFTGHSLSINAEFAQPLSPERARELLDGATGVQLVD------VPTPLAAAGVDESLVGRI 304
Query: 340 RRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375
RRD GL +FV GD +RKGAALN +QIAE+L
Sbjct: 305 RRDPGVPDGRGLALFVSGDNLRKGAALNTIQIAELL 340
>pdb|2HJS|A Chain A, The Structure Of A Probable Aspartate-Semialdehyde
Dehydrogenase From Pseudomonas Aeruginosa
Length = 340
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 153/331 (46%), Gaps = 23/331 (6%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
+ + +L +RDFP + +LAS SAG++ F + + V ++ F V +A F+A
Sbjct: 20 EALVGLLDERDFPLHRLHLLASAESAGQRXGFAESSLRVGDVDSFDFSSVGLAFFAAAAE 79
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+S+ A G V+D S A P V P V + V + A A P
Sbjct: 80 VSRAHAERARAAGCSVIDLSGALE-----PSVAPPVX------VSVNAERLASQAAPFLL 128
Query: 173 TIICLMAA------TPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTC 226
+ C +AA PL ++ ++ ++EL QT E+L +P
Sbjct: 129 SSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEP 188
Query: 227 KIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAE 286
++F +Q AFNL + V G++ E ++ E + + ++ + TCI+ PV +
Sbjct: 189 RLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSL 248
Query: 287 SVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIRRDVSQ 345
SV LQ +P+D +L G+ + + +PT + + +D+ VGR+R Q
Sbjct: 249 SVTLQCAEPVDLAAVTRVLDATKGIEWVGE---GDYPTVVGDALGQDETYVGRVR--AGQ 303
Query: 346 DGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+++++ D VRKGAALNAV + E+L+
Sbjct: 304 ADPCQVNLWIVSDNVRKGAALNAVLLGELLI 334
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 145/331 (43%), Gaps = 73/331 (22%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL----------------TE 96
Q F+ +L+D + + AS+RSAGK+ ++D Y ++
Sbjct: 22 QRFVQLLADHPX-FELTALAASERSAGKK--YKDACYWFQDRDIPENIKDXVVIPTDPKH 78
Query: 97 DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGI 156
+ F+ VDI + ++KKF P ++G ++ N+SA+R E+VPLVIPEVN + + I
Sbjct: 79 EEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRXEEDVPLVIPEVNADHLELI 138
Query: 157 KVGMGK----GALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELE 212
++ K GA+I NPNCSTI ++ P+ + + + ++T Q +
Sbjct: 139 EIQREKRGWDGAIITNPNCSTICAVITLKPIXDKFGLEAVFIATXQAVSGAGYNGV---- 194
Query: 213 LQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKD---- 268
+ +L+ P K NEEE + + + KD
Sbjct: 195 -PSXAILDNLIPFIK----------------------NEEEKXQTESLKLLGTLKDGKVE 231
Query: 269 ---VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDI------LK--NAPGV---VVI 314
+++A+C RV V+ H ES+ ++ ++ + + +++ LK N P +VI
Sbjct: 232 LANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVXDKFDPLKDLNLPTYAKPIVI 291
Query: 315 DDRASNHFPTP---LEVSNKDDVAVGRIRRD 342
R P P N + VGRIR+D
Sbjct: 292 --REEIDRPQPRLDRNEGNGXSIVVGRIRKD 320
>pdb|3UW3|A Chain A, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
pdb|3UW3|B Chain B, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
Length = 377
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 133/344 (38%), Gaps = 49/344 (14%)
Query: 63 DFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFGPIA 121
DF ++ + GK SF T+++ T D D+ + GG + P
Sbjct: 29 DFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATSIDDLKKCDVIITCQGGDYTNDVFPKL 88
Query: 122 VEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179
G +D +S+ RM ++ +++ VN + V K + NC+ + LMA
Sbjct: 89 RAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALVNGTKNFI--GGNCTVSLMLMA 146
Query: 180 ATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQT----------------------RE 217
L R V M TYQ M EL Q R
Sbjct: 147 LGGLFRENLVDWMTAMTYQAASGAGAQNMRELLAQMGTLNGAVAAQLADPASAILDIDRR 206
Query: 218 VL---EGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWND------KD 268
VL G F A +L L NG + EE K ET KI
Sbjct: 207 VLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNGMSREEWKGGAETNKILGKPAMGEPGS 266
Query: 269 VRVTATCIRVPVMRAHAESVNLQFEK--PLDE-----DTARDILKNAPGVVVIDDRASNH 321
V V C+R+ MR H++++ ++ +K PLDE +A D +K P + AS
Sbjct: 267 VPVDGLCVRIGAMRCHSQALTIKLKKDVPLDEINGILASANDWVKVVPN----EREASMR 322
Query: 322 FPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAA 365
+P +V+ V VGR+R+ ++ G + L F GDQ+ GAA
Sbjct: 323 DLSPAKVTGTLSVPVGRLRK-LAMGGEY-LSAFTVGDQLLWGAA 364
>pdb|1MC4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Vibrio Cholerae El Tor
pdb|3PZR|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Nadp And Product
Of S-Carbamoyl-L-Cysteine
pdb|3PZR|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Nadp And Product
Of S-Carbamoyl-L-Cysteine
pdb|3Q0E|A Chain A, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Product Of
S-Allyl-L-Cysteine Sulfoxide
pdb|3Q0E|B Chain B, Crystals Structure Of Aspartate Beta-Semialdehyde
Dehydrogenase From Vibrio Cholerae With Product Of
S-Allyl-L-Cysteine Sulfoxide
pdb|1MB4|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Vibrio Cholerae With Nadp And S-methyl-l-cysteine
Sulfoxide
pdb|1MB4|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Vibrio Cholerae With Nadp And S-methyl-l-cysteine
Sulfoxide
Length = 370
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 132/325 (40%), Gaps = 53/325 (16%)
Query: 79 GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFR 136
GK A+ +E L + +D + GGS ++K P + G +D +S R
Sbjct: 47 GKDAGMLHDAFDIESLKQ-----LDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLR 101
Query: 137 MVENVPLVIPEVN-PEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVS 195
M + + + VN + + GI G NC+ + LMA L+ R V M
Sbjct: 102 MDKEAIITLDPVNLKQILHGIHHGT---KTFVGGNCTVSLMLMALGGLYERGLVEWMSAM 158
Query: 196 TYQXXXXXXXXXMEELELQT----------------------REVLE----GKPPTCKIF 229
TYQ M EL Q ++V E G PT F
Sbjct: 159 TYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSGSFPTDN-F 217
Query: 230 SQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKD--VRVTATCIRVPVMRAHAES 287
A +L +NG ++EE K E KI +D V + TC+R+ MR H+++
Sbjct: 218 GVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQA 277
Query: 288 VNLQFEK--PLDE-----DTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIR 340
+ ++ ++ PLDE T D +K P I R TP +V+ V VGR+R
Sbjct: 278 LTIKLKQNIPLDEIEEMIATHNDWVKVIPNERDITAREL----TPAKVTGTLSVPVGRLR 333
Query: 341 RDVSQDGNHGLDIFVCGDQVRKGAA 365
+ G+ L+ F GDQ+ GAA
Sbjct: 334 KMAM--GDDFLNAFTVGDQLLWGAA 356
>pdb|1NWC|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae
pdb|1NWC|B Chain B, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae
pdb|1TA4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae With A Bound Arsenate
pdb|1TB4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae With A Bound Periodate
Length = 371
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 132/323 (40%), Gaps = 46/323 (14%)
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAF 135
GK A+ +EEL + +DI + GG + + P G VD +SA
Sbjct: 48 GGKDAGDLKSAFDIEELKK-----LDIIVTCQGGDYTNEVYPKLKATGWDGYWVDAASAL 102
Query: 136 RMVENVPLVIPEVNPEAMS-GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194
RM ++ +V+ VN +S G+K G+ NC+ + LMA L + V + V
Sbjct: 103 RMKDDAIIVLDPVNQHVISEGLKKGI---KTFVGGNCTVSLMLMAIGGLFEKDLVEWISV 159
Query: 195 STYQXXXXXXXXXMEELELQTREVLEG------KPPTCKIF----------------SQQ 232
+TYQ M EL L +LE K P I +
Sbjct: 160 ATYQAASGAGAKNMREL-LSQMGLLEQAVSSELKDPASSILDIERKVTAKMRADNFPTDN 218
Query: 233 YAFNLFSHNAPVL-----ENGYNEEEMKMVKETRKIW--NDKDVRVTATCIRVPVMRAHA 285
+ L P + E G +EE K ET KI +D + V C+R+ +R H+
Sbjct: 219 FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRCHS 278
Query: 286 ESVNLQFEKPLD-EDTARDILKNAPGVVVI--DDRASNHFPTPLEVSNKDDVAVGRIRRD 342
++ ++ +K L E+ + I + V VI D + TP +V+ V VGR+R+
Sbjct: 279 QAFTIKLKKDLPLEEIEQIIASHNEWVKVIPNDKEITLRELTPAKVTGTLSVPVGRLRKL 338
Query: 343 VSQDGNHGLDIFVCGDQVRKGAA 365
G L F GDQ+ GAA
Sbjct: 339 AM--GPEYLAAFTVGDQLLWGAA 359
>pdb|1PR3|A Chain A, Crystal Structure Of The R103k Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 132/323 (40%), Gaps = 46/323 (14%)
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAF 135
GK A+ +EEL + +DI + GG + + P G VD +SA
Sbjct: 48 GGKDAGDLKSAFDIEELKK-----LDIIVTCQGGDYTNEVYPKLKATGWDGYWVDAASAL 102
Query: 136 RMVENVPLVIPEVNPEAMS-GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194
+M ++ +V+ VN +S G+K G+ NC+ + LMA L + V + V
Sbjct: 103 KMKDDAIIVLDPVNQHVISEGLKKGI---KTFVGGNCTVSLMLMAIGGLFEKDLVEWISV 159
Query: 195 STYQXXXXXXXXXMEELELQTREVLEG------KPPTCKIF----------------SQQ 232
+TYQ M EL L +LE K P I +
Sbjct: 160 ATYQAASGAGAKNMREL-LSQMGLLEQAVSSELKDPASSILDIERKVTAKMRADNFPTDN 218
Query: 233 YAFNLFSHNAPVL-----ENGYNEEEMKMVKETRKIW--NDKDVRVTATCIRVPVMRAHA 285
+ L P + E G +EE K ET KI +D + V C+R+ +R H+
Sbjct: 219 FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRCHS 278
Query: 286 ESVNLQFEKPLD-EDTARDILKNAPGVVVI--DDRASNHFPTPLEVSNKDDVAVGRIRRD 342
++ ++ +K L E+ + I + V VI D + TP +V+ V VGR+R+
Sbjct: 279 QAFTIKLKKDLPLEEIEQIIASHNEWVKVIPNDKEITLRELTPAKVTGTLSVPVGRLRKL 338
Query: 343 VSQDGNHGLDIFVCGDQVRKGAA 365
G L F GDQ+ GAA
Sbjct: 339 AM--GPEYLAAFTVGDQLLWGAA 359
>pdb|1PS8|A Chain A, Crystal Structure Of The R270k Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 132/323 (40%), Gaps = 46/323 (14%)
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAF 135
GK A+ +EEL + +DI + GG + + P G VD +SA
Sbjct: 48 GGKDAGDLKSAFDIEELKK-----LDIIVTCQGGDYTNEVYPKLKATGWDGYWVDAASAL 102
Query: 136 RMVENVPLVIPEVNPEAMS-GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194
RM ++ +V+ VN +S G+K G+ NC+ + LMA L + V + V
Sbjct: 103 RMKDDAIIVLDPVNQHVISEGLKKGI---KTFVGGNCTVSLMLMAIGGLFEKDLVEWISV 159
Query: 195 STYQXXXXXXXXXMEELELQTREVLEG------KPPTCKIF----------------SQQ 232
+TYQ M EL L +LE K P I +
Sbjct: 160 ATYQAASGAGAKNMREL-LSQMGLLEQAVSSELKDPASSILDIERKVTAKMRADNFPTDN 218
Query: 233 YAFNLFSHNAPVL-----ENGYNEEEMKMVKETRKIW--NDKDVRVTATCIRVPVMRAHA 285
+ L P + E G +EE K ET KI +D + V C+++ +R H+
Sbjct: 219 FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVKIGALRCHS 278
Query: 286 ESVNLQFEKPLD-EDTARDILKNAPGVVVI--DDRASNHFPTPLEVSNKDDVAVGRIRRD 342
++ ++ +K L E+ + I + V VI D + TP +V+ V VGR+R+
Sbjct: 279 QAFTIKLKKDLPLEEIEQIIASHNEWVKVIPNDKEITLRELTPAKVTGTLSVPVGRLRKL 338
Query: 343 VSQDGNHGLDIFVCGDQVRKGAA 365
G L F GDQ+ GAA
Sbjct: 339 AM--GPEYLAAFTVGDQLLWGAA 359
>pdb|1BRM|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|C Chain C, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1GL3|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
pdb|1GL3|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
Length = 367
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 128/311 (41%), Gaps = 50/311 (16%)
Query: 96 EDSFD-----GVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEV 148
+D+FD +DI + GG + + P E G +D +S+ RM ++ +++ V
Sbjct: 55 QDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPV 114
Query: 149 NPEAMS-----GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXX 203
N + ++ GI+ +G NC+ + LM+ L V + V+TYQ
Sbjct: 115 NQDVITDGLNNGIRTFVGG-------NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGG 167
Query: 204 XXXXMEELELQTREVL-----EGKPPTCKIFSQQYAFNLFSHNA--PV------------ 244
M EL Q + E P+ I + + + PV
Sbjct: 168 GARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLI 227
Query: 245 ------LENGYNEEEMKMVKETRKIWNDKDV-RVTATCIRVPVMRAHAESVNLQFEKPLD 297
L+NG + EE K ET KI N V V C+RV +R H+++ ++ +K +
Sbjct: 228 PWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVS 287
Query: 298 EDTARDIL--KNAPGVVVIDDR-ASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIF 354
T ++L N VV +DR + TP V+ VGR+R+ G L F
Sbjct: 288 IPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRK--LNMGPEFLSAF 345
Query: 355 VCGDQVRKGAA 365
GDQ+ GAA
Sbjct: 346 TVGDQLLWGAA 356
>pdb|1T4B|A Chain A, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4B|B Chain B, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4D|A Chain A, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|B Chain B, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|C Chain C, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
Length = 367
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 128/311 (41%), Gaps = 50/311 (16%)
Query: 96 EDSFD-----GVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEV 148
+D+FD +DI + GG + + P E G +D +S+ RM ++ +++ V
Sbjct: 55 QDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPV 114
Query: 149 NPEAMS-----GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXX 203
N + ++ GI+ +G NC+ + LM+ L V + V+TYQ
Sbjct: 115 NQDVITDGLNNGIRTFVGG-------NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGG 167
Query: 204 XXXXMEELELQTREVL-----EGKPPTCKIFSQQYAFNLFSHNA--PV------------ 244
M EL Q + E P+ I + + + PV
Sbjct: 168 GARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLI 227
Query: 245 ------LENGYNEEEMKMVKETRKIWNDKDV-RVTATCIRVPVMRAHAESVNLQFEKPLD 297
L+NG + EE K ET KI N V V C+RV +R H+++ ++ +K +
Sbjct: 228 PWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVS 287
Query: 298 EDTARDIL--KNAPGVVVIDDR-ASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIF 354
T ++L N VV +DR + TP V+ VGR+R+ G L F
Sbjct: 288 IPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRK--LNMGPEFLSAF 345
Query: 355 VCGDQVRKGAA 365
GDQ+ GAA
Sbjct: 346 TVGDQLLWGAA 356
>pdb|1OZA|A Chain A, Crystal Structure Of The R103l Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 131/323 (40%), Gaps = 46/323 (14%)
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAF 135
GK A+ +EEL + +DI + GG + + P G VD +SA
Sbjct: 48 GGKDAGDLKSAFDIEELKK-----LDIIVTCQGGDYTNEVYPKLKATGWDGYWVDAASAL 102
Query: 136 RMVENVPLVIPEVNPEAMS-GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194
M ++ +V+ VN +S G+K G+ NC+ + LMA L + V + V
Sbjct: 103 LMKDDAIIVLDPVNQHVISEGLKKGI---KTFVGGNCTVSLMLMAIGGLFEKDLVEWISV 159
Query: 195 STYQXXXXXXXXXMEELELQTREVLEG------KPPTCKIF----------------SQQ 232
+TYQ M EL L +LE K P I +
Sbjct: 160 ATYQAASGAGAKNMREL-LSQMGLLEQAVSSELKDPASSILDIERKVTAKMRADNFPTDN 218
Query: 233 YAFNLFSHNAPVL-----ENGYNEEEMKMVKETRKIW--NDKDVRVTATCIRVPVMRAHA 285
+ L P + E G +EE K ET KI +D + V C+R+ +R H+
Sbjct: 219 FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRCHS 278
Query: 286 ESVNLQFEKPLD-EDTARDILKNAPGVVVI--DDRASNHFPTPLEVSNKDDVAVGRIRRD 342
++ ++ +K L E+ + I + V VI D + TP +V+ V VGR+R+
Sbjct: 279 QAFTIKLKKDLPLEEIEQIIASHNEWVKVIPNDKEITLRELTPAKVTGTLSVPVGRLRKL 338
Query: 343 VSQDGNHGLDIFVCGDQVRKGAA 365
G L F GDQ+ GAA
Sbjct: 339 AM--GPEYLAAFTVGDQLLWGAA 359
>pdb|1PQU|A Chain A, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|B Chain B, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|C Chain C, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|D Chain D, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
Length = 371
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 132/323 (40%), Gaps = 46/323 (14%)
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAF 135
GK A+ +EEL + +DI + GG + + P G VD +SA
Sbjct: 48 GGKDAGDLKSAFDIEELKK-----LDIIVTCQGGDYTNEVYPKLKATGWDGYWVDAASAL 102
Query: 136 RMVENVPLVIPEVNPEAMS-GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194
RM ++ +V+ VN +S G+K G+ NC+ + LMA L + V + V
Sbjct: 103 RMKDDAIIVLDPVNQHVISEGLKKGI---KTFVGGNCTVSLMLMAIGGLFEKDLVEWISV 159
Query: 195 STYQXXXXXXXXXMEELELQTREVLEG------KPPTCKIF----------------SQQ 232
+TYQ M EL L +LE K P I +
Sbjct: 160 ATYQAASGAGAKNMREL-LSQMGLLEQAVSSELKDPASSILDIERKVTAKMRADNFPTDN 218
Query: 233 YAFNLFSHNAPVL-----ENGYNEEEMKMVKETRKI--WNDKDVRVTATCIRVPVMRAHA 285
+ L P + E G +EE K ET KI +D + V C+R+ +R ++
Sbjct: 219 FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRCNS 278
Query: 286 ESVNLQFEKPLD-EDTARDILKNAPGVVVI--DDRASNHFPTPLEVSNKDDVAVGRIRRD 342
++ ++ +K L E+ + I + V VI D + TP +V+ V VGR+R+
Sbjct: 279 QAFTIKLKKDLPLEEIEQIIASHNEWVKVIPNDKEITLRELTPAKVTGTLSVPVGRLRKL 338
Query: 343 VSQDGNHGLDIFVCGDQVRKGAA 365
G L F GDQ+ GAA
Sbjct: 339 AM--GPEYLAAFTVGDQLLWGAA 359
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 119/289 (41%), Gaps = 46/289 (15%)
Query: 96 EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
ED D VD+ L + +++ V+ G IVV N+S FRM +VPL+ PE+N E +
Sbjct: 73 EDHKD-VDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDVPLINPEINWEHLEL 131
Query: 156 IKVGM----GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEEL 211
+K KG L+ NPNC+ I M PL A ++++++T Q + +
Sbjct: 132 LKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIATKSKIIITTLQAVSGAGYNGISFM 191
Query: 212 ELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRV 271
++ + K KI + N N ++ +
Sbjct: 192 AIEGNIIPYIKGEEDKIAKELTKLNGKLENNQIIPANLDS-------------------- 231
Query: 272 TATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN------------APGVVVIDDRAS 319
T T IRVP H +N+ + ++ + + LKN AP +I R
Sbjct: 232 TVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKSLPQQKNLPTAPKQPII-VRDE 290
Query: 320 NHFPTPLEVSNKDD---VAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAA 365
P P+ N + V VGRIR + N+ L + V GD + +GAA
Sbjct: 291 EDRPQPIIDVNAESGMAVTVGRIRHE-----NNVLRLVVLGDNLVRGAA 334
>pdb|1PQP|A Chain A, Crystal Structure Of The C136s Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Aspartate Semialdehyde And Phosphate
Length = 371
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 131/323 (40%), Gaps = 46/323 (14%)
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAF 135
GK A+ +EEL + +DI + GG + + P G VD +SA
Sbjct: 48 GGKDAGDLKSAFDIEELKK-----LDIIVTCQGGDYTNEVYPKLKATGWDGYWVDAASAL 102
Query: 136 RMVENVPLVIPEVNPEAMS-GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194
RM ++ +V+ VN +S G+K G+ N + + LMA L + V + V
Sbjct: 103 RMKDDAIIVLDPVNQHVISEGLKKGI---KTFVGGNSTVSLMLMAIGGLFEKDLVEWISV 159
Query: 195 STYQXXXXXXXXXMEELELQTREVLEG------KPPTCKIF----------------SQQ 232
+TYQ M EL L +LE K P I +
Sbjct: 160 ATYQAASGAGAKNMREL-LSQMGLLEQAVSSELKDPASSILDIERKVTAKMRADNFPTDN 218
Query: 233 YAFNLFSHNAPVL-----ENGYNEEEMKMVKETRKIW--NDKDVRVTATCIRVPVMRAHA 285
+ L P + E G +EE K ET KI +D + V C+R+ +R H+
Sbjct: 219 FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRCHS 278
Query: 286 ESVNLQFEKPLD-EDTARDILKNAPGVVVI--DDRASNHFPTPLEVSNKDDVAVGRIRRD 342
++ ++ +K L E+ + I + V VI D + TP +V+ V VGR+R+
Sbjct: 279 QAFTIKLKKDLPLEEIEQIIASHNEWVKVIPNDKEITLRELTPAKVTGTLSVPVGRLRKL 338
Query: 343 VSQDGNHGLDIFVCGDQVRKGAA 365
G L F GDQ+ GAA
Sbjct: 339 AM--GPEYLAAFTVGDQLLWGAA 359
>pdb|1NWH|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithioacetal Reaction Intermediate At 2.0 A
pdb|1NWH|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithioacetal Reaction Intermediate At 2.0 A
pdb|1NX6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithiocetal Reaction Intermediate With Phosphate At
2.15 A
Length = 371
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 131/323 (40%), Gaps = 46/323 (14%)
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAF 135
GK A+ +EEL + +DI + GG + + P G VD +SA
Sbjct: 48 GGKDAGDLKSAFDIEELKK-----LDIIVTCQGGDYTNEVYPKLKATGWDGYWVDAASAL 102
Query: 136 RMVENVPLVIPEVNPEAMS-GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194
RM ++ +V+ VN +S G+K G+ N + + LMA L + V + V
Sbjct: 103 RMKDDAIIVLDPVNQHVISEGLKKGI---KTFVGGNXTVSLMLMAIGGLFEKDLVEWISV 159
Query: 195 STYQXXXXXXXXXMEELELQTREVLEG------KPPTCKIF----------------SQQ 232
+TYQ M EL L +LE K P I +
Sbjct: 160 ATYQAASGAGAKNMREL-LSQMGLLEQAVSSELKDPASSILDIERKVTAKMRADNFPTDN 218
Query: 233 YAFNLFSHNAPVL-----ENGYNEEEMKMVKETRKIW--NDKDVRVTATCIRVPVMRAHA 285
+ L P + E G +EE K ET KI +D + V C+R+ +R H+
Sbjct: 219 FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRCHS 278
Query: 286 ESVNLQFEKPLD-EDTARDILKNAPGVVVI--DDRASNHFPTPLEVSNKDDVAVGRIRRD 342
++ ++ +K L E+ + I + V VI D + TP +V+ V VGR+R+
Sbjct: 279 QAFTIKLKKDLPLEEIEQIIASHNEWVKVIPNDKEITLRELTPAKVTGTLSVPVGRLRKL 338
Query: 343 VSQDGNHGLDIFVCGDQVRKGAA 365
G L F GDQ+ GAA
Sbjct: 339 AM--GPEYLAAFTVGDQLLWGAA 359
>pdb|1PU2|A Chain A, Crystal Structure Of The K246r Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 131/323 (40%), Gaps = 46/323 (14%)
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAF 135
GK A+ +EEL + +DI + GG + + P G VD +SA
Sbjct: 48 GGKDAGDLKSAFDIEELKK-----LDIIVTCQGGDYTNEVYPKLKATGWDGYWVDAASAL 102
Query: 136 RMVENVPLVIPEVNPEAMS-GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194
RM ++ +V+ VN +S G+K G+ N + + LMA L + V + V
Sbjct: 103 RMKDDAIIVLDPVNQHVISEGLKKGI---KTFVGGNXTVSLMLMAIGGLFEKDLVEWISV 159
Query: 195 STYQXXXXXXXXXMEELELQTREVLEG------KPPTCKIF----------------SQQ 232
+TYQ M EL L +LE K P I +
Sbjct: 160 ATYQAASGAGAKNMREL-LSQMGLLEQAVSSELKDPASSILDIERKVTAKMRADNFPTDN 218
Query: 233 YAFNLFSHNAPVL-----ENGYNEEEMKMVKETRKIW--NDKDVRVTATCIRVPVMRAHA 285
+ L P + E G +EE + ET KI +D + V C+R+ +R H+
Sbjct: 219 FGAALGGSLIPWIDKLLPETGQTKEEWRGYAETNKILGLSDNPIPVDGLCVRIGALRCHS 278
Query: 286 ESVNLQFEKPLD-EDTARDILKNAPGVVVI--DDRASNHFPTPLEVSNKDDVAVGRIRRD 342
++ ++ +K L E+ + I + V VI D + TP +V+ V VGR+R+
Sbjct: 279 QAFTIKLKKDLPLEEIEQIIASHNEWVKVIPNDKEITLRELTPAKVTGTLSVPVGRLRKL 338
Query: 343 VSQDGNHGLDIFVCGDQVRKGAA 365
G L F GDQ+ GAA
Sbjct: 339 AM--GPEYLAAFTVGDQLLWGAA 359
>pdb|1Q2X|A Chain A, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
pdb|1Q2X|B Chain B, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
Length = 371
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 131/323 (40%), Gaps = 46/323 (14%)
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAF 135
GK A+ +EEL + +DI + GG + + P G VD +SA
Sbjct: 48 GGKDAGDLKSAFDIEELKK-----LDIIVTCQGGDYTNEVYPKLKATGWDGYWVDAASAL 102
Query: 136 RMVENVPLVIPEVNPEAMS-GIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194
RM ++ +V+ VN +S G+K G+ N + + LMA L + V + V
Sbjct: 103 RMKDDAIIVLDPVNQHVISEGLKKGI---KTFVGGNXTVSLMLMAIGGLFEKDLVEWISV 159
Query: 195 STYQXXXXXXXXXMEELELQTREVLEG------KPPTCKIF----------------SQQ 232
+TYQ M EL L +LE K P I +
Sbjct: 160 ATYQAASGAGAKNMREL-LSQMGLLEQAVSSELKDPASSILDIERKVTAKMRADNFPTDN 218
Query: 233 YAFNLFSHNAPVL-----ENGYNEEEMKMVKETRKIW--NDKDVRVTATCIRVPVMRAHA 285
+ L P + E G ++E K ET KI +D + V C+R+ +R H+
Sbjct: 219 FGAALGGSLIPWIDKLLPETGQTKDEWKGYAETNKILGLSDNPIPVDGLCVRIGALRCHS 278
Query: 286 ESVNLQFEKPLD-EDTARDILKNAPGVVVI--DDRASNHFPTPLEVSNKDDVAVGRIRRD 342
++ ++ +K L E+ + I + V VI D + TP +V+ V VGR+R+
Sbjct: 279 QAFTIKLKKDLPLEEIEQIIASHNEWVKVIPNDKEITLRELTPAKVTGTLSVPVGRLRKL 338
Query: 343 VSQDGNHGLDIFVCGDQVRKGAA 365
G L F GDQ+ GAA
Sbjct: 339 AM--GPEYLAAFTVGDQLLWGAA 359
>pdb|3HSK|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
pdb|3HSK|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
Length = 381
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 153/390 (39%), Gaps = 114/390 (29%)
Query: 53 QEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQDKAY-----TVEELTED--------- 97
Q F+ +LS P I L AS RSAGK+ ++D A T+ E +D
Sbjct: 33 QRFILLLSKH--PEFEIHALGASSRSAGKK--YKDAASWKQTETLPETEQDIVVQECKPE 88
Query: 98 --------SFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVN 149
F G+D G I K F VE G VV N+ +R ++VPLV+P VN
Sbjct: 89 GNFLECDVVFSGLDA---DVAGDIEKSF----VEAGLAVVSNAKNYRREKDVPLVVPIVN 141
Query: 150 PEAMSGI---------KVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXX 200
PE + + K G G +I NCST + PL +
Sbjct: 142 PEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLKPLVEK-------------- 187
Query: 201 XXXXXXXMEELELQTREVLEGKPPTCKIFSQQYA-FNLFSHNAPVLENGYNEEEMKMVKE 259
++ L T + + G FS + ++ + P + EE K+ E
Sbjct: 188 ----FGPIDALTTTTLQAISGAG-----FSPGVSGMDILDNIVPYISG----EEDKLEWE 234
Query: 260 TRKIWN-------------DKDVRVTATCIRVPVMRAHAESVNLQFEK---PLDEDTARD 303
T+KI + +++V+A C RVPV+ H E ++L+F P ED +
Sbjct: 235 TKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQC 294
Query: 304 I-----------LKNAP--GVVVID--DRASNHFPTPLEVSNKDD---VAVGRIRRDVSQ 345
+ +AP + V+D DR P P ++D V+VGRIR D
Sbjct: 295 LREYECAASKLGCHSAPKQTIHVLDQPDR-----PQPRLDRDRDSGYGVSVGRIREDSLL 349
Query: 346 DGNHGLDIFVCGDQVRKGAALNAVQIAEML 375
D + V GAA + IAE+L
Sbjct: 350 D----FKMVVLSHNTIIGAAGAGILIAEIL 375
>pdb|4DPK|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPK|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota
pdb|4DPM|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|E Chain E, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPM|F Chain F, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Coa
pdb|4DPL|A Chain A, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|B Chain B, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|C Chain C, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
pdb|4DPL|D Chain D, Structure Of Malonyl-coenzyme A Reductase From
Crenarchaeota In Complex With Nadp
Length = 359
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 114/278 (41%), Gaps = 46/278 (16%)
Query: 54 EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED------------SFDG 101
E++ +LS+ PY LA K S GK + TV ++ ++ D
Sbjct: 22 EYVRMLSNH--PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDD 79
Query: 102 VDIALFS-----AGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGI 156
VDI +FS A G + ++F ++G V+ NS R +VPL++PE+NP +S I
Sbjct: 80 VDI-IFSPLPQGAAGPVEEQFA----KEGFPVISNSPDHRFDPDVPLLVPELNPHTISLI 134
Query: 157 ----KVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELE 212
K KG ++ P C+ + + + K+ ++T Q + L+
Sbjct: 135 DEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYPGIPSLD 194
Query: 213 LQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVT 272
+ + G K + F + S E N +E K+ +DV +
Sbjct: 195 VVDNILPLGDGYDAKTIKE--IFRILS------EVKRNVDEPKL----------EDVSLA 236
Query: 273 ATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG 310
AT R+ + H E + + F++ + ++ L+N G
Sbjct: 237 ATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRG 274
>pdb|3DR3|A Chain A, Structure Of Idp00107, A Potential N-Acetyl-Gamma-
Glutamylphosphate Reductase From Shigella Flexneri
Length = 337
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEA 152
GVD+ + +S P +E G +V D S AFR+ + PE+ +A
Sbjct: 75 GVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQA 134
Query: 153 MSGIKVGMG----KGALIANPNCSTIICLMAATPL 183
G+ G + LIA P C +A PL
Sbjct: 135 AYGLAEWCGNKLKEANLIAVPGCYPTAAQLALKPL 169
>pdb|2CZC|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 334
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 269 VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVID 315
+ + VP H SV ++ +KPL +D DI +N V++ +
Sbjct: 202 INIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFE 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,891,118
Number of Sequences: 62578
Number of extensions: 373049
Number of successful extensions: 931
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 58
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)