Query 017153
Match_columns 376
No_of_seqs 179 out of 1570
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:04:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02383 aspartate semialdehyd 100.0 4.4E-84 9.6E-89 635.3 39.7 344 33-376 1-344 (344)
2 PRK06728 aspartate-semialdehyd 100.0 7.9E-82 1.7E-86 616.0 37.1 329 38-376 4-342 (347)
3 PRK08040 putative semialdehyde 100.0 9.1E-81 2E-85 608.3 37.5 327 38-375 3-330 (336)
4 PRK05671 aspartate-semialdehyd 100.0 9.2E-80 2E-84 602.5 37.5 328 39-376 4-332 (336)
5 PRK14874 aspartate-semialdehyd 100.0 2.1E-77 4.6E-82 587.8 38.1 331 40-376 2-334 (334)
6 PRK06598 aspartate-semialdehyd 100.0 9.1E-78 2E-82 590.5 34.8 333 40-376 2-368 (369)
7 TIGR01296 asd_B aspartate-semi 100.0 3.1E-76 6.7E-81 579.8 37.1 330 41-376 1-337 (339)
8 TIGR01745 asd_gamma aspartate- 100.0 1.2E-73 2.7E-78 559.5 34.9 331 40-376 1-366 (366)
9 COG0136 Asd Aspartate-semialde 100.0 4.1E-73 8.9E-78 544.9 34.0 328 39-376 1-334 (334)
10 PRK06901 aspartate-semialdehyd 100.0 9.8E-73 2.1E-77 541.4 34.4 308 39-376 3-318 (322)
11 COG0002 ArgC Acetylglutamate s 100.0 4.2E-72 9.1E-77 537.4 26.6 300 38-376 1-334 (349)
12 TIGR01850 argC N-acetyl-gamma- 100.0 2.4E-70 5.2E-75 539.9 29.5 298 40-376 1-331 (346)
13 PLN02968 Probable N-acetyl-gam 100.0 4.1E-68 8.9E-73 528.3 31.7 312 27-376 26-366 (381)
14 TIGR01851 argC_other N-acetyl- 100.0 4.6E-68 1E-72 509.8 28.3 291 40-376 2-308 (310)
15 PRK00436 argC N-acetyl-gamma-g 100.0 6.7E-67 1.4E-71 515.0 30.8 296 39-376 2-328 (343)
16 PRK11863 N-acetyl-gamma-glutam 100.0 6.9E-67 1.5E-71 504.8 29.0 292 38-376 1-305 (313)
17 TIGR00978 asd_EA aspartate-sem 100.0 3.5E-62 7.6E-67 481.4 31.6 299 40-376 1-340 (341)
18 PRK08664 aspartate-semialdehyd 100.0 1.2E-60 2.5E-65 471.9 30.3 300 38-376 2-344 (349)
19 KOG4354 N-acetyl-gamma-glutamy 100.0 3.6E-52 7.9E-57 378.0 15.6 293 37-376 17-325 (340)
20 KOG4777 Aspartate-semialdehyde 100.0 1E-47 2.3E-52 351.2 11.6 318 40-376 4-361 (361)
21 PRK13535 erythrose 4-phosphate 100.0 8.3E-42 1.8E-46 332.9 30.4 299 39-375 1-332 (336)
22 PRK08955 glyceraldehyde-3-phos 100.0 1.5E-40 3.3E-45 324.1 28.8 294 39-374 2-329 (334)
23 PRK15425 gapA glyceraldehyde-3 100.0 1.1E-39 2.4E-44 316.8 30.9 296 39-375 2-329 (331)
24 PLN03096 glyceraldehyde-3-phos 100.0 2E-39 4.2E-44 320.4 30.5 299 38-375 59-390 (395)
25 PLN02358 glyceraldehyde-3-phos 100.0 4.1E-38 9E-43 307.5 32.5 297 38-375 4-335 (338)
26 TIGR01532 E4PD_g-proteo D-eryt 100.0 1.6E-38 3.6E-43 309.5 29.5 234 41-308 1-264 (325)
27 PTZ00023 glyceraldehyde-3-phos 100.0 5.2E-38 1.1E-42 305.8 28.9 297 39-375 2-333 (337)
28 TIGR01534 GAPDH-I glyceraldehy 100.0 6.7E-38 1.4E-42 304.7 25.8 235 41-309 1-265 (327)
29 PRK07403 glyceraldehyde-3-phos 100.0 3.9E-37 8.6E-42 299.3 30.5 300 39-375 1-332 (337)
30 PLN02272 glyceraldehyde-3-phos 100.0 4.2E-37 9E-42 305.3 30.5 292 40-374 86-413 (421)
31 PRK07729 glyceraldehyde-3-phos 100.0 1.5E-35 3.3E-40 288.6 30.4 296 39-374 2-329 (343)
32 PLN02237 glyceraldehyde-3-phos 100.0 5.7E-35 1.2E-39 290.4 30.4 295 38-374 74-407 (442)
33 PF02774 Semialdhyde_dhC: Semi 100.0 2.8E-36 6E-41 272.8 16.0 179 180-362 1-184 (184)
34 PRK04207 glyceraldehyde-3-phos 100.0 1.5E-32 3.2E-37 270.6 26.8 241 39-325 1-259 (341)
35 PTZ00353 glycosomal glyceralde 100.0 4.1E-31 8.9E-36 257.5 28.5 289 39-374 2-332 (342)
36 PRK08289 glyceraldehyde-3-phos 100.0 1.3E-30 2.9E-35 259.8 30.4 298 38-375 126-468 (477)
37 PTZ00434 cytosolic glyceraldeh 100.0 3.3E-28 7.2E-33 237.0 28.6 301 38-374 2-350 (361)
38 COG0057 GapA Glyceraldehyde-3- 100.0 6.5E-28 1.4E-32 230.9 26.4 236 39-310 1-266 (335)
39 PF01118 Semialdhyde_dh: Semia 99.9 1.1E-26 2.3E-31 196.2 9.4 112 41-154 1-119 (121)
40 TIGR01546 GAPDH-II_archae glyc 99.9 2.4E-22 5.3E-27 196.0 23.6 229 42-316 1-249 (333)
41 PRK08300 acetaldehyde dehydrog 99.9 6.2E-21 1.4E-25 183.5 20.5 225 38-316 3-244 (302)
42 TIGR03215 ac_ald_DH_ac acetald 99.7 2.6E-17 5.6E-22 157.9 14.8 166 39-218 1-173 (285)
43 smart00859 Semialdhyde_dh Semi 99.6 1.6E-15 3.5E-20 127.8 9.8 112 41-154 1-121 (122)
44 PF00044 Gp_dh_N: Glyceraldehy 99.4 5.8E-13 1.3E-17 116.6 10.5 121 40-171 1-151 (151)
45 KOG0657 Glyceraldehyde 3-phosp 99.3 4E-12 8.7E-17 118.8 6.1 176 100-309 73-248 (285)
46 smart00846 Gp_dh_N Glyceraldeh 99.2 1.3E-10 2.8E-15 101.7 13.2 121 40-171 1-149 (149)
47 PF02800 Gp_dh_C: Glyceraldehy 99.1 1.8E-10 4E-15 101.6 8.9 108 176-308 1-108 (157)
48 COG4569 MhpF Acetaldehyde dehy 98.9 3.4E-09 7.3E-14 95.6 6.7 163 39-212 4-174 (310)
49 PF01113 DapB_N: Dihydrodipico 98.4 5.6E-07 1.2E-11 76.2 6.2 93 40-135 1-101 (124)
50 PRK00048 dihydrodipicolinate r 98.2 1.6E-05 3.4E-10 75.8 12.7 91 39-133 1-92 (257)
51 TIGR01921 DAP-DH diaminopimela 98.2 2.8E-06 6.2E-11 83.1 7.7 86 39-131 3-90 (324)
52 PF10727 Rossmann-like: Rossma 98.1 2.2E-06 4.7E-11 73.0 3.5 92 39-135 10-107 (127)
53 PRK13302 putative L-aspartate 98.1 7.3E-06 1.6E-10 78.7 6.6 93 37-132 4-98 (271)
54 PRK13303 L-aspartate dehydroge 98.0 2E-05 4.3E-10 75.4 7.8 90 40-133 2-93 (265)
55 TIGR00036 dapB dihydrodipicoli 98.0 2.8E-05 6.1E-10 74.4 8.8 93 40-135 2-102 (266)
56 KOG4039 Serine/threonine kinas 97.9 5.5E-05 1.2E-09 67.5 9.3 87 39-129 18-126 (238)
57 COG0289 DapB Dihydrodipicolina 97.9 0.00011 2.3E-09 69.5 10.3 95 39-135 2-103 (266)
58 PRK13301 putative L-aspartate 97.8 5.5E-05 1.2E-09 71.9 6.9 94 38-135 1-97 (267)
59 PRK13304 L-aspartate dehydroge 97.7 6.6E-05 1.4E-09 71.8 6.7 90 40-133 2-93 (265)
60 PF03807 F420_oxidored: NADP o 97.7 2.9E-05 6.4E-10 62.0 3.3 91 41-133 1-95 (96)
61 COG2910 Putative NADH-flavin r 97.6 0.00068 1.5E-08 61.0 11.0 66 40-112 1-73 (211)
62 PF13460 NAD_binding_10: NADH( 97.6 0.00016 3.4E-09 64.2 6.9 87 42-135 1-100 (183)
63 PF01408 GFO_IDH_MocA: Oxidore 97.6 6.6E-05 1.4E-09 62.2 3.9 86 40-129 1-90 (120)
64 COG2085 Predicted dinucleotide 97.5 0.00024 5.2E-09 65.2 6.6 92 39-135 1-96 (211)
65 CHL00194 ycf39 Ycf39; Provisio 97.4 0.00049 1.1E-08 67.0 8.3 89 40-133 1-110 (317)
66 PRK07679 pyrroline-5-carboxyla 97.4 0.00069 1.5E-08 65.1 9.0 157 39-209 3-182 (279)
67 PRK11579 putative oxidoreducta 97.4 0.0005 1.1E-08 68.1 7.6 85 39-129 4-92 (346)
68 COG1712 Predicted dinucleotide 97.4 0.00036 7.8E-09 64.5 5.9 143 40-202 1-149 (255)
69 PRK07634 pyrroline-5-carboxyla 97.3 0.00044 9.5E-09 64.8 6.7 95 39-136 4-103 (245)
70 PLN02819 lysine-ketoglutarate 97.3 0.00085 1.9E-08 75.0 9.9 91 39-132 569-679 (1042)
71 PRK08818 prephenate dehydrogen 97.3 0.00071 1.5E-08 67.8 7.7 81 39-134 4-90 (370)
72 COG1748 LYS9 Saccharopine dehy 97.3 0.00084 1.8E-08 67.4 8.1 92 39-134 1-101 (389)
73 PRK06270 homoserine dehydrogen 97.2 0.0005 1.1E-08 68.2 5.6 91 39-130 2-123 (341)
74 PRK12491 pyrroline-5-carboxyla 97.2 0.0008 1.7E-08 64.7 6.5 154 40-206 3-177 (272)
75 PRK06349 homoserine dehydrogen 97.2 0.0011 2.3E-08 67.9 7.5 90 38-130 2-102 (426)
76 COG0673 MviM Predicted dehydro 97.1 0.00057 1.2E-08 66.8 5.3 88 38-129 2-95 (342)
77 PRK11880 pyrroline-5-carboxyla 97.1 0.00067 1.4E-08 64.5 5.5 95 39-136 2-98 (267)
78 PLN02256 arogenate dehydrogena 97.1 0.0023 5E-08 62.5 9.2 88 38-133 35-128 (304)
79 COG2344 AT-rich DNA-binding pr 97.1 0.00088 1.9E-08 60.3 5.6 94 38-137 83-182 (211)
80 PF03447 NAD_binding_3: Homose 97.1 0.00033 7.1E-09 58.3 2.8 84 46-132 1-90 (117)
81 PF05368 NmrA: NmrA-like famil 97.1 0.00042 9E-09 64.2 3.7 89 42-133 1-102 (233)
82 PF03435 Saccharop_dh: Sacchar 97.1 0.0011 2.3E-08 66.6 6.8 88 42-133 1-99 (386)
83 PLN02775 Probable dihydrodipic 97.1 0.0036 7.9E-08 60.3 9.6 96 37-135 9-114 (286)
84 TIGR01915 npdG NADPH-dependent 97.0 0.0015 3.2E-08 60.5 6.8 94 40-137 1-106 (219)
85 PRK06444 prephenate dehydrogen 97.0 0.001 2.3E-08 60.9 5.7 61 40-134 1-61 (197)
86 COG0287 TyrA Prephenate dehydr 97.0 0.0015 3.2E-08 63.1 6.9 93 39-135 3-101 (279)
87 PRK06928 pyrroline-5-carboxyla 97.0 0.002 4.3E-08 62.0 7.9 158 40-208 2-179 (277)
88 PRK07417 arogenate dehydrogena 97.0 0.00083 1.8E-08 64.6 5.1 89 40-134 1-93 (279)
89 PRK11199 tyrA bifunctional cho 97.0 0.0013 2.7E-08 66.1 6.5 78 39-134 98-177 (374)
90 PF02629 CoA_binding: CoA bind 97.0 0.0016 3.4E-08 52.5 5.8 84 39-130 3-91 (96)
91 PLN02206 UDP-glucuronate decar 96.9 0.0041 8.9E-08 63.8 9.3 102 30-135 110-235 (442)
92 PRK07502 cyclohexadienyl dehyd 96.9 0.0021 4.7E-08 62.5 6.6 93 39-134 6-102 (307)
93 PRK06476 pyrroline-5-carboxyla 96.8 0.0011 2.5E-08 62.8 4.2 94 40-136 1-97 (258)
94 PRK05472 redox-sensing transcr 96.8 0.003 6.5E-08 58.4 6.4 93 39-137 84-182 (213)
95 PRK08655 prephenate dehydrogen 96.8 0.0023 4.9E-08 65.7 6.0 89 40-133 1-93 (437)
96 PRK08507 prephenate dehydrogen 96.7 0.0022 4.8E-08 61.4 5.4 90 40-134 1-93 (275)
97 PRK07680 late competence prote 96.7 0.002 4.3E-08 61.7 5.1 94 40-136 1-100 (273)
98 TIGR02130 dapB_plant dihydrodi 96.7 0.0058 1.3E-07 58.7 7.9 93 40-135 1-103 (275)
99 PRK14982 acyl-ACP reductase; P 96.7 0.0013 2.7E-08 65.2 3.4 93 39-134 155-248 (340)
100 PRK14619 NAD(P)H-dependent gly 96.7 0.0066 1.4E-07 59.2 8.3 78 38-135 3-85 (308)
101 PRK10206 putative oxidoreducta 96.7 0.0029 6.3E-08 62.7 5.9 88 39-129 1-92 (344)
102 PRK06719 precorrin-2 dehydroge 96.6 0.012 2.5E-07 52.0 8.8 81 39-126 13-95 (157)
103 TIGR03649 ergot_EASG ergot alk 96.6 0.0048 1E-07 58.8 6.6 89 41-134 1-106 (285)
104 PRK11559 garR tartronate semia 96.5 0.0026 5.7E-08 61.4 4.4 89 39-135 2-99 (296)
105 PLN02166 dTDP-glucose 4,6-dehy 96.5 0.013 2.9E-07 60.0 9.7 96 36-135 117-236 (436)
106 PLN02427 UDP-apiose/xylose syn 96.5 0.017 3.6E-07 57.8 10.1 34 38-73 13-46 (386)
107 PF03446 NAD_binding_2: NAD bi 96.5 0.0012 2.6E-08 58.3 1.5 88 39-134 1-96 (163)
108 PRK08374 homoserine dehydrogen 96.5 0.011 2.3E-07 58.6 8.4 93 39-132 2-122 (336)
109 PF01210 NAD_Gly3P_dh_N: NAD-d 96.5 0.0023 5E-08 56.2 3.2 106 41-154 1-123 (157)
110 PRK08229 2-dehydropantoate 2-r 96.4 0.0087 1.9E-07 58.9 7.6 93 39-135 2-110 (341)
111 PLN02688 pyrroline-5-carboxyla 96.4 0.0069 1.5E-07 57.5 6.6 157 40-207 1-175 (266)
112 COG0345 ProC Pyrroline-5-carbo 96.4 0.0051 1.1E-07 58.9 5.4 155 40-206 2-174 (266)
113 PRK00094 gpsA NAD(P)H-dependen 96.4 0.0053 1.2E-07 59.7 5.8 91 40-135 2-108 (325)
114 PF00056 Ldh_1_N: lactate/mala 96.4 0.0041 8.9E-08 53.8 4.4 71 40-111 1-79 (141)
115 cd05294 LDH-like_MDH_nadp A la 96.4 0.022 4.7E-07 55.8 9.8 71 40-111 1-82 (309)
116 cd01065 NAD_bind_Shikimate_DH 96.4 0.0059 1.3E-07 52.8 5.2 92 39-134 19-118 (155)
117 PLN02695 GDP-D-mannose-3',5'-e 96.3 0.025 5.3E-07 56.6 10.2 33 38-73 20-52 (370)
118 PRK06392 homoserine dehydrogen 96.3 0.014 3E-07 57.6 8.2 92 40-132 1-116 (326)
119 TIGR01761 thiaz-red thiazoliny 96.3 0.0046 9.9E-08 61.4 4.5 86 38-129 2-94 (343)
120 PRK14194 bifunctional 5,10-met 96.2 0.026 5.6E-07 55.0 9.3 94 39-154 159-253 (301)
121 PRK07819 3-hydroxybutyryl-CoA 96.2 0.054 1.2E-06 52.4 11.5 138 40-189 6-180 (286)
122 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.033 7.2E-07 49.7 9.2 108 39-172 44-151 (168)
123 PLN02712 arogenate dehydrogena 96.2 0.0095 2.1E-07 64.2 6.8 89 38-134 51-145 (667)
124 PLN02712 arogenate dehydrogena 96.2 0.009 2E-07 64.4 6.5 89 38-134 368-462 (667)
125 PRK06249 2-dehydropantoate 2-r 96.1 0.041 8.9E-07 53.7 10.4 93 37-133 3-107 (313)
126 PF01488 Shikimate_DH: Shikima 96.1 0.0086 1.9E-07 51.3 4.7 90 39-133 12-110 (135)
127 PTZ00431 pyrroline carboxylate 96.1 0.021 4.7E-07 54.3 7.8 151 40-208 4-172 (260)
128 PLN00016 RNA-binding protein; 96.1 0.023 5.1E-07 56.7 8.4 94 38-134 51-166 (378)
129 cd01336 MDH_cytoplasmic_cytoso 96.0 0.018 3.8E-07 56.8 7.1 72 39-111 2-88 (325)
130 COG0460 ThrA Homoserine dehydr 96.0 0.019 4.2E-07 56.5 7.2 91 38-130 2-111 (333)
131 KOG1502 Flavonol reductase/cin 96.0 0.021 4.6E-07 56.0 7.4 69 38-109 5-86 (327)
132 KOG4777 Aspartate-semialdehyde 96.0 0.013 2.8E-07 55.3 5.5 25 351-375 331-355 (361)
133 PLN02657 3,8-divinyl protochlo 95.9 0.035 7.7E-07 56.0 9.1 32 39-73 60-91 (390)
134 PLN00141 Tic62-NAD(P)-related 95.9 0.052 1.1E-06 50.8 9.7 32 39-73 17-48 (251)
135 PRK05447 1-deoxy-D-xylulose 5- 95.9 0.024 5.3E-07 56.9 7.7 88 40-129 2-119 (385)
136 COG5322 Predicted dehydrogenas 95.9 0.02 4.3E-07 54.5 6.6 92 40-134 168-263 (351)
137 PRK06545 prephenate dehydrogen 95.9 0.013 2.9E-07 58.4 5.9 91 40-134 1-97 (359)
138 PF13380 CoA_binding_2: CoA bi 95.9 0.051 1.1E-06 45.4 8.4 79 40-129 1-83 (116)
139 PRK11908 NAD-dependent epimera 95.9 0.038 8.2E-07 54.3 8.9 32 40-73 2-33 (347)
140 TIGR00872 gnd_rel 6-phosphoglu 95.9 0.012 2.6E-07 57.2 5.2 88 40-135 1-96 (298)
141 PRK08306 dipicolinate synthase 95.9 0.012 2.5E-07 57.4 5.0 90 39-135 152-244 (296)
142 cd05213 NAD_bind_Glutamyl_tRNA 95.8 0.017 3.7E-07 56.5 6.2 91 39-134 178-275 (311)
143 TIGR03026 NDP-sugDHase nucleot 95.8 0.015 3.2E-07 59.1 5.9 89 40-133 1-121 (411)
144 PRK14618 NAD(P)H-dependent gly 95.8 0.014 3E-07 57.3 5.5 92 39-135 4-107 (328)
145 TIGR02853 spore_dpaA dipicolin 95.8 0.012 2.6E-07 57.0 4.7 91 39-135 151-243 (287)
146 PRK06813 homoserine dehydrogen 95.8 0.026 5.5E-07 56.2 7.0 91 39-130 2-120 (346)
147 PRK11064 wecC UDP-N-acetyl-D-m 95.7 0.014 3E-07 59.5 5.2 89 39-135 3-122 (415)
148 PRK12320 hypothetical protein; 95.7 0.071 1.5E-06 57.7 10.6 88 40-135 1-104 (699)
149 PRK05808 3-hydroxybutyryl-CoA 95.7 0.14 3.1E-06 49.0 11.8 142 40-193 4-180 (282)
150 PRK06522 2-dehydropantoate 2-r 95.7 0.035 7.6E-07 53.4 7.5 92 40-135 1-103 (304)
151 PRK05678 succinyl-CoA syntheta 95.6 0.064 1.4E-06 52.1 9.1 90 39-136 8-101 (291)
152 TIGR01470 cysG_Nterm siroheme 95.6 0.043 9.3E-07 50.5 7.4 85 39-129 9-98 (205)
153 PRK15461 NADH-dependent gamma- 95.5 0.014 3E-07 56.7 4.2 88 40-135 2-98 (296)
154 TIGR01019 sucCoAalpha succinyl 95.5 0.072 1.6E-06 51.6 8.9 90 39-136 6-99 (286)
155 PRK12490 6-phosphogluconate de 95.5 0.019 4.2E-07 55.7 4.9 88 40-135 1-97 (299)
156 COG0240 GpsA Glycerol-3-phosph 95.5 0.021 4.6E-07 56.0 5.1 92 40-136 2-109 (329)
157 cd01338 MDH_choloroplast_like 95.4 0.044 9.6E-07 54.0 7.3 73 39-111 2-88 (322)
158 PF04321 RmlD_sub_bind: RmlD s 95.4 0.043 9.3E-07 52.9 7.0 85 40-139 1-107 (286)
159 cd01078 NAD_bind_H4MPT_DH NADP 95.3 0.017 3.7E-07 52.2 3.8 93 39-135 28-132 (194)
160 cd01483 E1_enzyme_family Super 95.3 0.095 2.1E-06 44.9 8.2 91 41-134 1-123 (143)
161 PRK05086 malate dehydrogenase; 95.3 0.058 1.3E-06 52.9 7.5 71 40-111 1-79 (312)
162 TIGR01505 tartro_sem_red 2-hyd 95.2 0.016 3.4E-07 55.9 3.3 87 41-134 1-95 (291)
163 PRK06718 precorrin-2 dehydroge 95.1 0.14 3E-06 47.1 9.2 84 39-128 10-97 (202)
164 PRK09599 6-phosphogluconate de 95.1 0.03 6.5E-07 54.4 5.1 88 40-135 1-97 (301)
165 PRK08293 3-hydroxybutyryl-CoA 95.1 0.065 1.4E-06 51.7 7.2 92 40-137 4-125 (287)
166 TIGR01777 yfcH conserved hypot 95.1 0.094 2E-06 49.5 8.2 66 42-111 1-67 (292)
167 TIGR01759 MalateDH-SF1 malate 95.1 0.057 1.2E-06 53.3 6.8 73 39-111 3-89 (323)
168 PRK14179 bifunctional 5,10-met 95.1 0.11 2.3E-06 50.3 8.5 92 39-155 158-250 (284)
169 PRK08125 bifunctional UDP-gluc 95.0 0.13 2.9E-06 55.4 10.1 33 39-73 315-347 (660)
170 PRK09260 3-hydroxybutyryl-CoA 94.9 0.16 3.4E-06 49.0 9.4 142 40-193 2-179 (288)
171 PRK15059 tartronate semialdehy 94.9 0.034 7.4E-07 53.9 4.6 88 40-135 1-96 (292)
172 cd01337 MDH_glyoxysomal_mitoch 94.8 0.1 2.2E-06 51.2 7.8 71 40-111 1-78 (310)
173 PTZ00345 glycerol-3-phosphate 94.8 0.17 3.6E-06 50.8 9.4 104 27-137 3-134 (365)
174 PF02882 THF_DHG_CYH_C: Tetrah 94.7 0.21 4.6E-06 44.2 8.9 117 39-186 36-156 (160)
175 PRK14188 bifunctional 5,10-met 94.7 0.075 1.6E-06 51.7 6.5 95 39-155 158-257 (296)
176 PRK14189 bifunctional 5,10-met 94.6 0.19 4E-06 48.7 9.0 93 39-155 158-250 (285)
177 PLN02214 cinnamoyl-CoA reducta 94.6 0.12 2.7E-06 50.8 8.0 32 39-73 10-41 (342)
178 PRK12921 2-dehydropantoate 2-r 94.6 0.24 5.2E-06 47.7 9.9 92 40-135 1-105 (305)
179 COG4091 Predicted homoserine d 94.6 0.11 2.4E-06 51.3 7.3 93 36-132 14-133 (438)
180 PRK05442 malate dehydrogenase; 94.6 0.093 2E-06 51.8 7.0 73 39-111 4-90 (326)
181 PRK06223 malate dehydrogenase; 94.6 0.16 3.4E-06 49.4 8.5 68 40-110 3-79 (307)
182 TIGR03736 PRTRC_ThiF PRTRC sys 94.6 0.37 7.9E-06 45.7 10.6 94 39-133 11-142 (244)
183 PLN02602 lactate dehydrogenase 94.5 0.096 2.1E-06 52.2 6.8 84 24-111 22-115 (350)
184 PF02826 2-Hacid_dh_C: D-isome 94.5 0.025 5.5E-07 50.6 2.5 66 39-112 36-102 (178)
185 COG0702 Predicted nucleoside-d 94.4 0.072 1.6E-06 49.8 5.6 68 40-111 1-73 (275)
186 KOG2741 Dimeric dihydrodiol de 94.4 0.089 1.9E-06 51.8 6.3 87 38-129 5-100 (351)
187 cd00757 ThiF_MoeB_HesA_family 94.4 0.14 3E-06 47.7 7.5 92 39-133 21-144 (228)
188 TIGR02717 AcCoA-syn-alpha acet 94.4 0.19 4.2E-06 51.7 9.0 89 39-136 7-100 (447)
189 cd05212 NAD_bind_m-THF_DH_Cycl 94.3 0.15 3.2E-06 44.2 6.8 77 38-135 27-103 (140)
190 PRK05479 ketol-acid reductoiso 94.3 0.096 2.1E-06 51.8 6.3 90 39-136 17-111 (330)
191 PRK00066 ldh L-lactate dehydro 94.2 0.12 2.7E-06 50.7 6.8 69 40-111 7-83 (315)
192 COG3804 Uncharacterized conser 94.2 0.15 3.3E-06 48.9 7.0 88 39-131 2-97 (350)
193 COG3268 Uncharacterized conser 94.1 0.033 7.3E-07 54.5 2.6 92 39-135 6-107 (382)
194 KOG2711 Glycerol-3-phosphate d 94.1 0.19 4.2E-06 49.4 7.8 102 36-138 18-145 (372)
195 PRK14806 bifunctional cyclohex 94.1 0.092 2E-06 57.3 6.4 91 40-134 4-99 (735)
196 PRK08605 D-lactate dehydrogena 94.1 0.078 1.7E-06 52.4 5.3 86 39-133 146-237 (332)
197 COG0039 Mdh Malate/lactate deh 94.1 0.19 4E-06 49.3 7.7 68 40-110 1-78 (313)
198 PRK07531 bifunctional 3-hydrox 94.1 0.37 8E-06 50.3 10.5 91 40-136 5-120 (495)
199 PLN03209 translocon at the inn 94.1 0.18 3.9E-06 53.3 8.1 32 39-73 80-111 (576)
200 cd00704 MDH Malate dehydrogena 94.1 0.16 3.4E-06 50.1 7.3 72 40-111 1-86 (323)
201 PLN02662 cinnamyl-alcohol dehy 94.0 0.11 2.3E-06 50.2 6.0 32 39-73 4-35 (322)
202 COG0451 WcaG Nucleoside-diphos 94.0 0.2 4.3E-06 47.7 7.7 31 41-74 2-32 (314)
203 TIGR03376 glycerol3P_DH glycer 93.9 0.26 5.6E-06 49.0 8.6 108 41-151 1-135 (342)
204 PLN02700 homoserine dehydrogen 93.9 0.18 3.9E-06 50.7 7.4 29 102-130 110-138 (377)
205 PLN02696 1-deoxy-D-xylulose-5- 93.9 0.19 4.1E-06 51.5 7.6 89 39-129 57-177 (454)
206 PTZ00325 malate dehydrogenase; 93.9 0.21 4.6E-06 49.2 7.8 73 39-112 8-87 (321)
207 TIGR01214 rmlD dTDP-4-dehydror 93.8 0.092 2E-06 49.8 5.1 30 41-73 1-30 (287)
208 PRK14175 bifunctional 5,10-met 93.8 0.17 3.8E-06 49.0 6.9 92 39-154 158-249 (286)
209 PLN00106 malate dehydrogenase 93.8 0.19 4E-06 49.6 7.2 72 39-111 18-96 (323)
210 PRK06129 3-hydroxyacyl-CoA deh 93.8 1.3 2.7E-05 43.2 13.0 138 40-189 3-176 (308)
211 PLN00203 glutamyl-tRNA reducta 93.8 0.1 2.2E-06 54.7 5.6 92 39-134 266-371 (519)
212 PF13241 NAD_binding_7: Putati 93.7 0.27 5.8E-06 40.0 6.9 80 39-129 7-89 (103)
213 TIGR01757 Malate-DH_plant mala 93.7 0.18 4E-06 50.9 7.1 73 39-111 44-130 (387)
214 TIGR03466 HpnA hopanoid-associ 93.7 0.16 3.4E-06 48.9 6.5 32 40-74 1-32 (328)
215 PRK08219 short chain dehydroge 93.7 0.24 5.1E-06 44.9 7.3 31 39-73 3-33 (227)
216 PRK13940 glutamyl-tRNA reducta 93.7 0.074 1.6E-06 54.2 4.3 92 39-134 181-275 (414)
217 PRK08618 ornithine cyclodeamin 93.6 0.15 3.2E-06 50.3 6.2 92 39-135 127-224 (325)
218 PRK07530 3-hydroxybutyryl-CoA 93.6 0.2 4.4E-06 48.2 7.0 140 39-191 4-179 (292)
219 TIGR00465 ilvC ketol-acid redu 93.5 0.17 3.6E-06 49.8 6.3 162 39-209 3-194 (314)
220 PRK05562 precorrin-2 dehydroge 93.5 0.52 1.1E-05 44.0 9.3 97 23-129 13-114 (223)
221 TIGR01035 hemA glutamyl-tRNA r 93.5 0.096 2.1E-06 53.4 4.8 91 39-134 180-279 (417)
222 PLN02778 3,5-epimerase/4-reduc 93.5 0.083 1.8E-06 51.2 4.2 29 36-64 6-34 (298)
223 TIGR00715 precor6x_red precorr 93.5 0.32 6.9E-06 46.4 8.0 87 40-130 1-97 (256)
224 PRK05865 hypothetical protein; 93.5 0.21 4.5E-06 55.4 7.6 87 40-134 1-104 (854)
225 TIGR01772 MDH_euk_gproteo mala 93.5 0.2 4.4E-06 49.1 6.8 70 41-111 1-77 (312)
226 PLN02986 cinnamyl-alcohol dehy 93.4 0.25 5.4E-06 47.8 7.4 33 38-73 4-36 (322)
227 PLN00112 malate dehydrogenase 93.4 0.28 6.1E-06 50.4 8.0 74 38-111 99-186 (444)
228 PLN02545 3-hydroxybutyryl-CoA 93.4 0.21 4.6E-06 48.2 6.8 139 40-190 5-178 (295)
229 cd05291 HicDH_like L-2-hydroxy 93.4 0.17 3.8E-06 49.3 6.2 68 41-111 2-78 (306)
230 PRK14192 bifunctional 5,10-met 93.3 0.25 5.5E-06 47.8 7.1 92 39-155 159-250 (283)
231 PRK15057 UDP-glucose 6-dehydro 93.3 0.19 4.1E-06 50.8 6.5 91 40-135 1-120 (388)
232 PF00899 ThiF: ThiF family; I 93.3 0.3 6.5E-06 41.4 6.8 91 39-132 2-124 (135)
233 PTZ00187 succinyl-CoA syntheta 93.3 0.48 1E-05 46.6 9.0 93 39-136 29-124 (317)
234 PRK05690 molybdopterin biosynt 93.3 0.24 5.2E-06 46.9 6.7 91 39-132 32-154 (245)
235 PRK12480 D-lactate dehydrogena 93.2 0.24 5.2E-06 48.9 7.0 83 39-132 146-234 (330)
236 TIGR03589 PseB UDP-N-acetylglu 93.2 0.38 8.2E-06 47.0 8.4 34 39-73 4-37 (324)
237 TIGR02197 heptose_epim ADP-L-g 93.2 0.25 5.5E-06 47.2 7.0 29 42-72 1-29 (314)
238 cd05292 LDH_2 A subgroup of L- 93.2 0.15 3.2E-06 49.8 5.5 71 40-112 1-78 (308)
239 PRK06130 3-hydroxybutyryl-CoA 93.2 0.24 5.1E-06 48.1 6.9 92 39-135 4-118 (311)
240 TIGR01181 dTDP_gluc_dehyt dTDP 93.1 0.45 9.7E-06 45.3 8.6 32 41-73 1-32 (317)
241 PRK08268 3-hydroxy-acyl-CoA de 93.1 1.1 2.5E-05 46.8 12.1 95 37-136 5-126 (507)
242 cd01484 E1-2_like Ubiquitin ac 93.0 0.43 9.4E-06 44.9 8.1 104 41-148 1-138 (234)
243 PRK06153 hypothetical protein; 93.0 0.23 5.1E-06 49.9 6.4 97 39-138 176-304 (393)
244 PRK12439 NAD(P)H-dependent gly 92.9 0.18 3.9E-06 50.0 5.6 91 39-135 7-114 (341)
245 PRK00045 hemA glutamyl-tRNA re 92.9 0.18 3.9E-06 51.5 5.7 91 39-134 182-282 (423)
246 PRK12825 fabG 3-ketoacyl-(acyl 92.8 0.25 5.4E-06 45.1 6.1 26 39-64 6-31 (249)
247 TIGR02371 ala_DH_arch alanine 92.7 0.23 5E-06 49.0 6.0 93 39-135 128-225 (325)
248 PRK06141 ornithine cyclodeamin 92.7 0.15 3.1E-06 50.1 4.6 91 39-135 125-221 (314)
249 PRK00258 aroE shikimate 5-dehy 92.7 0.21 4.6E-06 48.0 5.6 89 39-132 123-221 (278)
250 COG2084 MmsB 3-hydroxyisobutyr 92.7 0.2 4.3E-06 48.5 5.3 90 40-135 1-98 (286)
251 PF02670 DXP_reductoisom: 1-de 92.7 0.24 5.1E-06 42.3 5.2 35 42-78 1-36 (129)
252 PRK15182 Vi polysaccharide bio 92.7 0.2 4.4E-06 51.3 5.7 90 40-135 7-123 (425)
253 PRK07574 formate dehydrogenase 92.6 0.3 6.4E-06 49.4 6.7 87 39-132 192-284 (385)
254 TIGR00507 aroE shikimate 5-deh 92.6 0.25 5.3E-06 47.2 5.9 90 39-133 117-215 (270)
255 PRK09436 thrA bifunctional asp 92.5 0.23 5.1E-06 55.0 6.3 90 38-130 464-576 (819)
256 PRK14169 bifunctional 5,10-met 92.5 0.75 1.6E-05 44.5 8.9 92 39-154 156-247 (282)
257 PRK15469 ghrA bifunctional gly 92.4 0.36 7.9E-06 47.3 7.0 84 39-132 136-226 (312)
258 PRK06046 alanine dehydrogenase 92.4 0.25 5.3E-06 48.7 5.8 91 39-134 129-225 (326)
259 PRK14620 NAD(P)H-dependent gly 92.4 0.19 4.2E-06 49.2 5.0 90 40-135 1-109 (326)
260 cd05290 LDH_3 A subgroup of L- 92.4 0.25 5.4E-06 48.4 5.7 68 41-111 1-78 (307)
261 PRK06035 3-hydroxyacyl-CoA deh 92.4 0.29 6.3E-06 47.2 6.1 141 40-192 4-182 (291)
262 PRK14190 bifunctional 5,10-met 92.3 0.77 1.7E-05 44.5 8.9 92 39-154 158-249 (284)
263 PRK07201 short chain dehydroge 92.3 0.5 1.1E-05 50.5 8.5 34 40-74 1-34 (657)
264 PF03721 UDPG_MGDP_dh_N: UDP-g 92.3 0.053 1.1E-06 49.1 0.9 70 40-114 1-89 (185)
265 TIGR02356 adenyl_thiF thiazole 92.3 0.51 1.1E-05 43.2 7.4 92 39-133 21-144 (202)
266 PRK07066 3-hydroxybutyryl-CoA 92.2 0.49 1.1E-05 46.7 7.6 93 39-136 7-123 (321)
267 PRK14173 bifunctional 5,10-met 92.1 1 2.2E-05 43.7 9.4 76 39-135 155-230 (287)
268 cd05293 LDH_1 A subgroup of L- 92.1 0.34 7.3E-06 47.5 6.3 71 39-111 3-81 (312)
269 PRK14191 bifunctional 5,10-met 92.1 0.91 2E-05 44.0 9.1 92 39-154 157-248 (285)
270 PF02737 3HCDH_N: 3-hydroxyacy 92.1 0.16 3.4E-06 45.7 3.6 140 41-192 1-175 (180)
271 PTZ00082 L-lactate dehydrogena 92.0 0.42 9.1E-06 47.1 6.9 70 39-111 6-84 (321)
272 COG0373 HemA Glutamyl-tRNA red 92.0 0.24 5.3E-06 50.3 5.3 91 39-134 178-276 (414)
273 TIGR02355 moeB molybdopterin s 92.0 0.48 1E-05 44.7 6.9 92 39-133 24-147 (240)
274 PRK14182 bifunctional 5,10-met 91.9 0.87 1.9E-05 44.0 8.7 92 39-154 157-248 (282)
275 COG1090 Predicted nucleoside-d 91.9 0.4 8.6E-06 46.1 6.1 69 42-116 1-71 (297)
276 cd01487 E1_ThiF_like E1_ThiF_l 91.8 1.4 3E-05 39.4 9.5 91 41-134 1-123 (174)
277 PRK14177 bifunctional 5,10-met 91.8 0.84 1.8E-05 44.2 8.4 88 39-154 159-246 (284)
278 PRK13243 glyoxylate reductase; 91.8 0.27 5.8E-06 48.7 5.2 85 39-132 150-240 (333)
279 PRK15181 Vi polysaccharide bio 91.7 0.23 5E-06 48.9 4.7 32 39-73 15-46 (348)
280 PTZ00117 malate dehydrogenase; 91.7 0.5 1.1E-05 46.4 6.9 70 39-111 5-83 (319)
281 COG0569 TrkA K+ transport syst 91.6 0.34 7.4E-06 45.2 5.5 83 40-127 1-94 (225)
282 PLN02896 cinnamyl-alcohol dehy 91.5 0.47 1E-05 46.7 6.6 32 39-73 10-41 (353)
283 PLN02572 UDP-sulfoquinovose sy 91.3 0.38 8.3E-06 49.4 6.0 58 11-72 14-77 (442)
284 PF01370 Epimerase: NAD depend 91.3 0.34 7.4E-06 44.0 5.1 23 42-64 1-23 (236)
285 PLN02516 methylenetetrahydrofo 91.3 1.2 2.7E-05 43.3 9.1 95 39-154 167-264 (299)
286 COG1004 Ugd Predicted UDP-gluc 91.2 0.21 4.7E-06 50.1 3.8 69 40-113 1-88 (414)
287 PRK14170 bifunctional 5,10-met 91.2 1.2 2.6E-05 43.1 8.8 92 39-154 157-248 (284)
288 cd05313 NAD_bind_2_Glu_DH NAD( 91.1 0.83 1.8E-05 43.5 7.6 91 39-133 38-154 (254)
289 PLN03139 formate dehydrogenase 91.1 0.43 9.2E-06 48.3 5.9 69 39-114 199-268 (386)
290 PF01073 3Beta_HSD: 3-beta hyd 91.1 0.4 8.6E-06 46.1 5.5 29 44-73 2-30 (280)
291 PLN00125 Succinyl-CoA ligase [ 91.1 1.8 3.8E-05 42.3 10.0 90 39-136 12-105 (300)
292 PLN02350 phosphogluconate dehy 91.0 0.25 5.5E-06 51.5 4.3 154 39-206 6-186 (493)
293 PRK05866 short chain dehydroge 91.0 0.45 9.7E-06 45.8 5.8 31 40-73 41-71 (293)
294 PRK05708 2-dehydropantoate 2-r 91.0 1.7 3.8E-05 42.2 9.9 89 39-131 2-103 (305)
295 TIGR01758 MDH_euk_cyt malate d 90.9 0.54 1.2E-05 46.4 6.3 33 41-73 1-37 (324)
296 PLN02353 probable UDP-glucose 90.8 0.29 6.4E-06 50.8 4.6 32 40-73 2-33 (473)
297 PRK14184 bifunctional 5,10-met 90.8 1.1 2.4E-05 43.5 8.2 95 39-155 157-252 (286)
298 PRK12829 short chain dehydroge 90.8 0.31 6.6E-06 45.3 4.3 32 39-73 11-42 (264)
299 PRK06436 glycerate dehydrogena 90.8 0.64 1.4E-05 45.4 6.7 82 39-132 122-209 (303)
300 PRK06196 oxidoreductase; Provi 90.7 1.1 2.4E-05 43.3 8.3 32 39-73 26-57 (315)
301 PLN00198 anthocyanidin reducta 90.7 0.42 9.1E-06 46.7 5.4 32 39-73 9-40 (338)
302 PRK00683 murD UDP-N-acetylmura 90.7 0.7 1.5E-05 46.9 7.2 84 39-130 3-88 (418)
303 PRK08328 hypothetical protein; 90.7 0.69 1.5E-05 43.3 6.5 92 39-133 27-151 (231)
304 cd01076 NAD_bind_1_Glu_DH NAD( 90.6 1.1 2.5E-05 41.8 7.9 87 38-133 30-136 (227)
305 PTZ00142 6-phosphogluconate de 90.6 0.32 7E-06 50.4 4.6 153 40-206 2-180 (470)
306 cd01492 Aos1_SUMO Ubiquitin ac 90.5 0.85 1.8E-05 41.6 6.9 92 39-133 21-143 (197)
307 PRK08644 thiamine biosynthesis 90.4 1.5 3.3E-05 40.5 8.5 93 39-134 28-152 (212)
308 PLN02240 UDP-glucose 4-epimera 90.4 0.43 9.4E-06 46.6 5.2 33 38-73 4-36 (352)
309 TIGR02279 PaaC-3OHAcCoADH 3-hy 90.4 3.3 7.1E-05 43.4 11.9 94 39-137 5-125 (503)
310 TIGR00518 alaDH alanine dehydr 90.4 0.46 1E-05 47.7 5.4 91 39-135 167-270 (370)
311 TIGR02992 ectoine_eutC ectoine 90.3 0.42 9E-06 47.1 5.0 93 39-135 129-227 (326)
312 COG1893 ApbA Ketopantoate redu 90.3 0.98 2.1E-05 44.2 7.5 80 40-123 1-89 (307)
313 PRK09414 glutamate dehydrogena 90.3 1.6 3.4E-05 45.0 9.2 90 38-133 231-344 (445)
314 PRK08264 short chain dehydroge 90.3 0.81 1.8E-05 41.9 6.6 25 39-63 6-30 (238)
315 PRK14168 bifunctional 5,10-met 90.2 1.8 3.8E-05 42.3 9.0 100 38-155 160-263 (297)
316 cd05211 NAD_bind_Glu_Leu_Phe_V 90.2 0.8 1.7E-05 42.6 6.5 34 38-75 22-55 (217)
317 PRK14172 bifunctional 5,10-met 90.2 1.7 3.7E-05 42.0 8.8 91 39-154 158-248 (278)
318 cd05191 NAD_bind_amino_acid_DH 90.2 2 4.3E-05 33.5 7.9 63 39-132 23-86 (86)
319 cd01488 Uba3_RUB Ubiquitin act 90.0 0.88 1.9E-05 44.2 6.8 104 41-148 1-143 (291)
320 cd01490 Ube1_repeat2 Ubiquitin 90.0 1.3 2.9E-05 45.4 8.4 106 41-148 1-145 (435)
321 PRK14031 glutamate dehydrogena 89.9 1.8 3.9E-05 44.5 9.3 90 38-133 227-343 (444)
322 PRK14187 bifunctional 5,10-met 89.9 2.1 4.5E-05 41.7 9.3 94 39-154 160-254 (294)
323 PRK05565 fabG 3-ketoacyl-(acyl 89.9 0.6 1.3E-05 42.7 5.4 31 39-72 5-35 (247)
324 cd01485 E1-1_like Ubiquitin ac 89.8 1.5 3.2E-05 40.1 7.8 92 39-133 19-146 (198)
325 PRK14180 bifunctional 5,10-met 89.8 3.2 6.9E-05 40.2 10.4 91 39-154 158-248 (282)
326 PRK07666 fabG 3-ketoacyl-(acyl 89.8 0.63 1.4E-05 42.7 5.5 32 39-73 7-38 (239)
327 TIGR00243 Dxr 1-deoxy-D-xylulo 89.8 0.5 1.1E-05 47.5 5.0 37 40-78 2-39 (389)
328 PRK12826 3-ketoacyl-(acyl-carr 89.7 0.5 1.1E-05 43.4 4.8 32 39-73 6-37 (251)
329 PRK06932 glycerate dehydrogena 89.7 0.8 1.7E-05 44.9 6.4 63 39-113 147-209 (314)
330 PRK05653 fabG 3-ketoacyl-(acyl 89.4 0.71 1.5E-05 42.1 5.5 26 39-64 5-30 (246)
331 TIGR01763 MalateDH_bact malate 89.4 0.79 1.7E-05 44.8 6.1 69 40-111 2-79 (305)
332 PRK13581 D-3-phosphoglycerate 89.4 0.56 1.2E-05 49.3 5.4 86 39-133 140-231 (526)
333 COG0771 MurD UDP-N-acetylmuram 89.4 1.3 2.8E-05 45.7 7.7 87 39-129 7-97 (448)
334 PRK14106 murD UDP-N-acetylmura 89.2 1.3 2.8E-05 45.2 7.8 89 39-132 5-99 (450)
335 TIGR01327 PGDH D-3-phosphoglyc 89.2 0.66 1.4E-05 48.8 5.7 87 39-133 138-230 (525)
336 PRK12475 thiamine/molybdopteri 89.1 1.2 2.5E-05 44.3 7.1 91 39-132 24-148 (338)
337 TIGR00873 gnd 6-phosphoglucona 89.1 0.73 1.6E-05 47.8 5.8 152 41-206 1-177 (467)
338 PRK07877 hypothetical protein; 89.1 1.4 3.1E-05 48.0 8.2 93 39-134 107-230 (722)
339 PRK12549 shikimate 5-dehydroge 89.0 0.81 1.8E-05 44.2 5.7 70 40-113 128-204 (284)
340 PRK06182 short chain dehydroge 89.0 1.9 4E-05 40.6 8.2 32 39-73 3-34 (273)
341 PRK01438 murD UDP-N-acetylmura 88.9 1.2 2.7E-05 45.9 7.5 87 39-129 16-106 (480)
342 PRK14183 bifunctional 5,10-met 88.9 2.4 5.2E-05 41.0 8.8 92 39-154 157-248 (281)
343 TIGR01692 HIBADH 3-hydroxyisob 88.9 0.32 7E-06 46.8 2.9 83 44-134 1-92 (288)
344 TIGR01724 hmd_rel H2-forming N 88.7 0.63 1.4E-05 45.8 4.7 80 50-134 30-118 (341)
345 cd01489 Uba2_SUMO Ubiquitin ac 88.7 1.1 2.3E-05 44.1 6.4 89 41-132 1-122 (312)
346 PRK00676 hemA glutamyl-tRNA re 88.6 1.3 2.7E-05 44.0 6.9 86 39-134 174-263 (338)
347 PRK12557 H(2)-dependent methyl 88.6 0.82 1.8E-05 45.5 5.6 79 50-134 30-118 (342)
348 TIGR00561 pntA NAD(P) transhyd 88.6 0.69 1.5E-05 48.4 5.3 92 39-135 164-287 (511)
349 COG1091 RfbD dTDP-4-dehydrorha 88.6 1.3 2.8E-05 42.8 6.8 31 40-74 1-31 (281)
350 cd01486 Apg7 Apg7 is an E1-lik 88.5 1.7 3.7E-05 42.4 7.6 38 99-138 106-144 (307)
351 PRK05600 thiamine biosynthesis 88.5 1.7 3.8E-05 43.6 7.9 91 39-132 41-163 (370)
352 PRK09291 short chain dehydroge 88.4 0.66 1.4E-05 42.9 4.6 31 40-73 3-33 (257)
353 PLN02650 dihydroflavonol-4-red 88.4 0.71 1.5E-05 45.3 5.1 33 38-73 4-36 (351)
354 PRK09466 metL bifunctional asp 88.4 0.55 1.2E-05 51.9 4.6 92 38-131 457-571 (810)
355 PRK15438 erythronate-4-phospha 88.3 0.81 1.8E-05 46.1 5.4 63 39-113 116-179 (378)
356 TIGR01179 galE UDP-glucose-4-e 88.3 1.2 2.5E-05 42.6 6.3 29 41-72 1-29 (328)
357 PRK01710 murD UDP-N-acetylmura 88.2 1.8 3.9E-05 44.5 8.1 84 40-130 15-106 (458)
358 PRK10792 bifunctional 5,10-met 88.2 0.89 1.9E-05 44.0 5.4 74 39-135 159-234 (285)
359 PRK14193 bifunctional 5,10-met 88.1 3.9 8.5E-05 39.6 9.7 93 39-154 158-250 (284)
360 PRK14186 bifunctional 5,10-met 88.0 1.1 2.4E-05 43.7 5.9 95 39-154 158-253 (297)
361 PRK08291 ectoine utilization p 88.0 0.78 1.7E-05 45.2 5.0 92 39-135 132-230 (330)
362 PRK00257 erythronate-4-phospha 88.0 1.1 2.4E-05 45.2 6.1 63 39-113 116-179 (381)
363 PRK09987 dTDP-4-dehydrorhamnos 87.9 0.62 1.3E-05 44.9 4.1 23 40-62 1-23 (299)
364 PLN02928 oxidoreductase family 87.8 0.98 2.1E-05 45.0 5.6 30 39-72 159-188 (347)
365 TIGR02354 thiF_fam2 thiamine b 87.7 2.1 4.5E-05 39.2 7.3 25 39-64 21-45 (200)
366 PRK08762 molybdopterin biosynt 87.6 2 4.3E-05 43.2 7.8 91 39-132 135-257 (376)
367 PRK08223 hypothetical protein; 87.6 2.2 4.9E-05 41.3 7.7 96 39-138 27-156 (287)
368 PRK08267 short chain dehydroge 87.5 1.1 2.4E-05 41.7 5.5 31 40-73 2-32 (260)
369 PRK14166 bifunctional 5,10-met 87.5 1.2 2.7E-05 43.0 5.9 92 39-154 157-248 (282)
370 PRK09009 C factor cell-cell si 87.5 2.5 5.3E-05 38.6 7.8 31 40-71 1-31 (235)
371 PRK09310 aroDE bifunctional 3- 87.4 1.1 2.4E-05 46.6 5.9 85 39-134 332-418 (477)
372 PRK14174 bifunctional 5,10-met 87.4 1.2 2.7E-05 43.3 5.8 99 39-155 159-261 (295)
373 PRK05597 molybdopterin biosynt 87.4 2.7 5.8E-05 42.0 8.4 91 39-132 28-150 (355)
374 PRK14178 bifunctional 5,10-met 87.3 1.1 2.5E-05 43.2 5.5 91 39-154 152-242 (279)
375 PRK07688 thiamine/molybdopteri 87.3 1.6 3.5E-05 43.3 6.8 91 39-132 24-148 (339)
376 PRK12939 short chain dehydroge 86.9 1.4 3E-05 40.4 5.8 31 39-72 7-37 (250)
377 cd01075 NAD_bind_Leu_Phe_Val_D 86.7 1.6 3.5E-05 39.8 6.0 81 39-129 28-111 (200)
378 COG1648 CysG Siroheme synthase 86.7 2.5 5.4E-05 39.1 7.2 90 26-127 5-99 (210)
379 PRK14171 bifunctional 5,10-met 86.6 1.3 2.8E-05 43.0 5.5 92 39-154 159-250 (288)
380 PRK10675 UDP-galactose-4-epime 86.5 0.89 1.9E-05 44.1 4.4 31 40-73 1-31 (338)
381 PRK06823 ornithine cyclodeamin 86.5 1.5 3.3E-05 43.0 6.1 105 39-154 128-237 (315)
382 PRK07774 short chain dehydroge 86.4 1.5 3.2E-05 40.4 5.7 32 39-73 6-37 (250)
383 PRK03369 murD UDP-N-acetylmura 86.4 1.6 3.4E-05 45.5 6.4 83 40-129 13-98 (488)
384 KOG1203 Predicted dehydrogenas 86.3 0.97 2.1E-05 45.9 4.6 34 37-73 77-110 (411)
385 PLN02583 cinnamoyl-CoA reducta 86.1 1.4 3.1E-05 42.2 5.6 32 39-73 6-37 (297)
386 PRK10637 cysG siroheme synthas 86.1 2.7 5.8E-05 43.4 7.9 92 25-128 4-100 (457)
387 PLN02260 probable rhamnose bio 86.1 0.94 2E-05 48.8 4.8 34 39-73 6-39 (668)
388 PF00070 Pyr_redox: Pyridine n 86.1 1.8 3.9E-05 33.0 5.1 30 41-74 1-30 (80)
389 PRK11150 rfaD ADP-L-glycero-D- 85.8 1 2.2E-05 43.2 4.4 31 42-75 2-32 (308)
390 PRK10217 dTDP-glucose 4,6-dehy 85.8 1.3 2.8E-05 43.4 5.2 24 40-63 2-25 (355)
391 PRK10084 dTDP-glucose 4,6 dehy 85.7 0.98 2.1E-05 44.2 4.3 24 40-63 1-24 (352)
392 PRK06407 ornithine cyclodeamin 85.5 1.7 3.8E-05 42.3 5.9 94 38-135 116-215 (301)
393 PRK14181 bifunctional 5,10-met 85.5 7.8 0.00017 37.6 10.2 97 39-154 153-253 (287)
394 PRK15116 sulfur acceptor prote 85.5 11 0.00024 36.2 11.2 94 39-135 30-156 (268)
395 COG2423 Predicted ornithine cy 85.4 1.3 2.9E-05 43.8 5.0 94 39-136 130-229 (330)
396 cd00401 AdoHcyase S-adenosyl-L 85.4 1.7 3.7E-05 44.3 5.9 87 39-132 202-289 (413)
397 PRK04690 murD UDP-N-acetylmura 85.3 3.2 7E-05 42.9 8.1 86 39-130 8-98 (468)
398 PRK15409 bifunctional glyoxyla 85.3 1.1 2.5E-05 44.1 4.5 68 39-114 145-213 (323)
399 PRK13403 ketol-acid reductoiso 85.3 2.5 5.4E-05 41.8 6.8 88 39-135 16-108 (335)
400 PRK07340 ornithine cyclodeamin 85.3 1.1 2.5E-05 43.6 4.5 91 39-135 125-220 (304)
401 PRK14185 bifunctional 5,10-met 85.3 2.2 4.8E-05 41.5 6.4 98 39-155 157-259 (293)
402 PRK14176 bifunctional 5,10-met 85.2 2.3 4.9E-05 41.3 6.4 91 39-154 164-254 (287)
403 PLN02858 fructose-bisphosphate 85.2 1 2.2E-05 52.7 4.6 88 39-134 324-420 (1378)
404 PRK05476 S-adenosyl-L-homocyst 85.1 1.4 3E-05 45.2 5.1 89 39-135 212-301 (425)
405 PRK07231 fabG 3-ketoacyl-(acyl 85.1 1.6 3.5E-05 40.0 5.2 31 40-73 6-36 (251)
406 PRK05557 fabG 3-ketoacyl-(acyl 85.1 1.7 3.7E-05 39.5 5.4 32 39-73 5-36 (248)
407 TIGR00936 ahcY adenosylhomocys 85.0 2 4.2E-05 43.8 6.1 89 39-135 195-284 (406)
408 PF00670 AdoHcyase_NAD: S-aden 84.9 0.99 2.1E-05 40.1 3.4 88 39-135 23-112 (162)
409 PRK07411 hypothetical protein; 84.9 3.4 7.4E-05 41.8 7.8 89 39-130 38-158 (390)
410 cd00650 LDH_MDH_like NAD-depen 84.8 2.1 4.5E-05 40.7 5.9 70 42-111 1-80 (263)
411 PRK14167 bifunctional 5,10-met 84.7 2.3 4.9E-05 41.5 6.1 97 39-154 157-257 (297)
412 PRK04663 murD UDP-N-acetylmura 84.6 5 0.00011 41.0 9.1 84 40-129 8-96 (438)
413 PLN02989 cinnamyl-alcohol dehy 84.5 1.8 4E-05 41.8 5.6 32 38-72 4-35 (325)
414 KOG1494 NAD-dependent malate d 84.5 2 4.3E-05 41.5 5.5 33 39-73 28-60 (345)
415 PRK14851 hypothetical protein; 84.5 6.3 0.00014 42.9 10.0 91 39-132 43-167 (679)
416 cd00755 YgdL_like Family of ac 84.5 7.4 0.00016 36.5 9.3 94 39-135 11-137 (231)
417 TIGR02622 CDP_4_6_dhtase CDP-g 84.4 1.8 3.9E-05 42.5 5.5 31 40-73 5-35 (349)
418 PRK07326 short chain dehydroge 84.4 1.8 3.8E-05 39.5 5.1 32 39-73 6-37 (237)
419 PRK12828 short chain dehydroge 84.3 1.9 4.1E-05 39.1 5.3 32 39-73 7-38 (239)
420 KOG0069 Glyoxylate/hydroxypyru 84.2 1.8 3.9E-05 42.8 5.3 83 39-130 162-251 (336)
421 PRK06487 glycerate dehydrogena 84.2 1.7 3.7E-05 42.7 5.1 61 39-113 148-209 (317)
422 PLN02858 fructose-bisphosphate 84.1 1 2.2E-05 52.7 4.1 89 39-135 4-101 (1378)
423 PRK06113 7-alpha-hydroxysteroi 84.0 1.9 4.2E-05 40.0 5.3 41 27-72 1-41 (255)
424 PRK09424 pntA NAD(P) transhydr 84.0 2.9 6.2E-05 43.9 7.0 30 39-72 165-194 (509)
425 PTZ00075 Adenosylhomocysteinas 84.0 1.9 4.2E-05 44.7 5.6 86 39-132 254-341 (476)
426 TIGR01472 gmd GDP-mannose 4,6- 84.0 1.5 3.3E-05 42.8 4.8 31 40-73 1-31 (343)
427 PLN02260 probable rhamnose bio 84.0 1 2.3E-05 48.5 3.9 26 38-63 379-404 (668)
428 PLN02653 GDP-mannose 4,6-dehyd 83.9 1.5 3.2E-05 42.8 4.7 32 39-73 6-37 (340)
429 PF02558 ApbA: Ketopantoate re 83.9 2.4 5.2E-05 36.2 5.5 77 42-122 1-88 (151)
430 COG0111 SerA Phosphoglycerate 83.8 1 2.2E-05 44.5 3.4 66 39-113 142-209 (324)
431 PRK07878 molybdopterin biosynt 83.7 4.3 9.4E-05 41.1 8.0 91 39-132 42-164 (392)
432 TIGR02440 FadJ fatty oxidation 83.7 7.2 0.00016 42.6 10.2 144 39-194 304-483 (699)
433 PRK08410 2-hydroxyacid dehydro 83.5 2.1 4.6E-05 41.9 5.5 64 39-113 145-208 (311)
434 PLN02897 tetrahydrofolate dehy 83.5 2.3 5.1E-05 42.2 5.7 94 39-154 214-311 (345)
435 TIGR01408 Ube1 ubiquitin-activ 83.2 4.2 9.1E-05 46.2 8.3 109 39-149 419-566 (1008)
436 PTZ00188 adrenodoxin reductase 83.1 3.6 7.9E-05 43.0 7.2 31 39-72 39-69 (506)
437 KOG0029 Amine oxidase [Seconda 83.1 2.2 4.7E-05 44.7 5.7 44 35-82 11-54 (501)
438 PRK01368 murD UDP-N-acetylmura 83.0 4.5 9.7E-05 41.8 7.9 89 33-129 1-91 (454)
439 TIGR02825 B4_12hDH leukotriene 82.8 2.3 4.9E-05 41.1 5.4 91 39-133 139-238 (325)
440 PRK08628 short chain dehydroge 82.7 2.1 4.6E-05 39.7 5.0 33 37-72 5-37 (258)
441 cd05295 MDH_like Malate dehydr 82.7 2.5 5.4E-05 43.6 5.8 73 39-111 123-209 (452)
442 PRK06199 ornithine cyclodeamin 82.6 2.2 4.7E-05 43.1 5.3 73 39-113 155-235 (379)
443 PLN02616 tetrahydrofolate dehy 82.6 2.6 5.7E-05 42.1 5.7 94 39-154 231-328 (364)
444 PRK12464 1-deoxy-D-xylulose 5- 82.5 2.4 5.3E-05 42.6 5.5 84 44-129 1-114 (383)
445 cd01339 LDH-like_MDH L-lactate 82.5 2.2 4.9E-05 41.3 5.2 67 42-111 1-76 (300)
446 PRK14852 hypothetical protein; 82.4 5 0.00011 45.1 8.3 92 39-133 332-457 (989)
447 PF02423 OCD_Mu_crystall: Orni 82.4 0.65 1.4E-05 45.5 1.4 94 38-134 127-226 (313)
448 PRK07060 short chain dehydroge 82.3 2.6 5.7E-05 38.5 5.4 32 39-73 9-40 (245)
449 PRK07589 ornithine cyclodeamin 82.3 2.8 6.1E-05 41.8 5.9 93 39-134 129-227 (346)
450 COG0743 Dxr 1-deoxy-D-xylulose 82.2 2.2 4.7E-05 42.6 4.9 35 40-76 2-37 (385)
451 TIGR01746 Thioester-redct thio 82.2 1.8 4E-05 41.8 4.5 32 41-73 1-32 (367)
452 PLN02686 cinnamoyl-CoA reducta 81.9 2.2 4.8E-05 42.5 5.1 33 38-73 52-84 (367)
453 KOG1431 GDP-L-fucose synthetas 81.8 2.3 4.9E-05 40.0 4.6 36 40-75 2-37 (315)
454 COG0190 FolD 5,10-methylene-te 81.6 5.1 0.00011 38.7 7.1 109 39-178 156-269 (283)
455 PRK11730 fadB multifunctional 81.4 20 0.00043 39.3 12.6 94 39-137 313-433 (715)
456 PRK09880 L-idonate 5-dehydroge 81.4 6.2 0.00013 38.5 8.0 91 39-132 170-266 (343)
457 KOG1429 dTDP-glucose 4-6-dehyd 81.4 2.6 5.7E-05 40.9 5.0 27 38-64 26-52 (350)
458 TIGR01381 E1_like_apg7 E1-like 81.4 6.5 0.00014 42.3 8.4 38 100-139 447-485 (664)
459 PRK05875 short chain dehydroge 81.4 3.2 6.8E-05 39.0 5.7 33 38-73 6-38 (276)
460 cd01079 NAD_bind_m-THF_DH NAD 81.2 6.5 0.00014 36.0 7.3 90 39-134 62-158 (197)
461 cd05188 MDR Medium chain reduc 81.2 4.3 9.4E-05 37.2 6.5 91 39-134 135-234 (271)
462 KOG2733 Uncharacterized membra 81.1 2.9 6.3E-05 41.7 5.3 138 39-187 5-162 (423)
463 TIGR02441 fa_ox_alpha_mit fatt 81.1 11 0.00023 41.5 10.3 132 39-181 335-501 (737)
464 PRK07023 short chain dehydroge 81.1 2.4 5.3E-05 38.9 4.7 31 40-73 2-32 (243)
465 PRK09496 trkA potassium transp 81.1 3.6 7.8E-05 41.8 6.4 70 40-114 1-78 (453)
466 PRK09135 pteridine reductase; 81.0 3.1 6.6E-05 38.0 5.4 32 39-73 6-37 (249)
467 PRK10538 malonic semialdehyde 81.0 2.6 5.6E-05 39.0 4.9 31 40-73 1-31 (248)
468 PRK06463 fabG 3-ketoacyl-(acyl 81.0 3.2 7E-05 38.5 5.5 33 38-73 6-38 (255)
469 PRK04308 murD UDP-N-acetylmura 80.9 7.2 0.00016 39.8 8.5 87 39-129 5-95 (445)
470 PRK06181 short chain dehydroge 80.8 2.7 5.9E-05 39.0 5.0 31 40-73 2-32 (263)
471 COG0604 Qor NADPH:quinone redu 80.5 3.1 6.7E-05 41.0 5.4 89 39-131 143-240 (326)
472 PRK12746 short chain dehydroge 80.3 3.3 7.1E-05 38.2 5.3 34 39-75 6-39 (254)
473 PRK14030 glutamate dehydrogena 80.2 8.1 0.00018 39.8 8.4 87 38-130 227-341 (445)
474 cd08295 double_bond_reductase_ 80.2 3.4 7.3E-05 40.2 5.6 90 39-132 152-251 (338)
475 PRK06124 gluconate 5-dehydroge 80.2 3.4 7.4E-05 38.2 5.4 32 39-73 11-42 (256)
476 PRK11154 fadJ multifunctional 80.1 12 0.00026 41.0 10.3 144 39-194 309-488 (708)
477 PRK08309 short chain dehydroge 79.9 6.4 0.00014 35.2 6.8 83 40-127 1-101 (177)
478 PRK06947 glucose-1-dehydrogena 79.6 3.1 6.8E-05 38.2 4.9 32 39-73 2-33 (248)
479 PRK00421 murC UDP-N-acetylmura 79.5 5.8 0.00013 40.8 7.3 86 39-130 7-95 (461)
480 PRK12827 short chain dehydroge 79.4 2.1 4.6E-05 39.1 3.7 32 39-73 6-37 (249)
481 PLN02477 glutamate dehydrogena 79.3 9.1 0.0002 39.1 8.5 86 39-133 206-311 (410)
482 cd08293 PTGR2 Prostaglandin re 79.3 4.3 9.3E-05 39.4 6.0 89 40-132 156-254 (345)
483 PRK02006 murD UDP-N-acetylmura 79.3 7.8 0.00017 40.3 8.3 86 40-129 8-101 (498)
484 cd00300 LDH_like L-lactate deh 79.2 2.9 6.3E-05 40.6 4.8 67 42-111 1-76 (300)
485 PRK00141 murD UDP-N-acetylmura 79.2 6.1 0.00013 40.9 7.4 86 39-130 15-103 (473)
486 PRK05786 fabG 3-ketoacyl-(acyl 79.1 3.8 8.2E-05 37.3 5.3 31 40-73 6-36 (238)
487 PRK09072 short chain dehydroge 79.1 3.8 8.2E-05 38.2 5.4 32 39-73 5-36 (263)
488 KOG1430 C-3 sterol dehydrogena 79.0 3.2 7E-05 41.5 5.0 33 39-72 4-36 (361)
489 PRK03806 murD UDP-N-acetylmura 78.7 11 0.00023 38.5 8.9 84 40-130 7-94 (438)
490 COG1064 AdhP Zn-dependent alco 78.6 7.6 0.00016 38.6 7.4 113 12-129 131-256 (339)
491 PRK06198 short chain dehydroge 78.6 4.3 9.3E-05 37.6 5.6 24 39-62 6-29 (260)
492 PRK13394 3-hydroxybutyrate deh 78.5 4 8.6E-05 37.7 5.3 31 39-72 7-37 (262)
493 PF02153 PDH: Prephenate dehyd 78.4 1.4 3E-05 41.9 2.2 38 97-134 41-81 (258)
494 PLN02494 adenosylhomocysteinas 78.3 4.1 8.8E-05 42.3 5.6 84 39-132 254-341 (477)
495 PLN03154 putative allyl alcoho 78.2 3.4 7.4E-05 40.7 5.0 89 39-131 159-257 (348)
496 cd05311 NAD_bind_2_malic_enz N 78.2 5.5 0.00012 37.1 6.1 92 39-134 25-130 (226)
497 PRK07523 gluconate 5-dehydroge 78.2 4.2 9.1E-05 37.6 5.3 31 39-72 10-40 (255)
498 cd08294 leukotriene_B4_DH_like 78.1 7.3 0.00016 37.3 7.2 90 39-132 144-241 (329)
499 PRK08063 enoyl-(acyl carrier p 78.1 3.9 8.4E-05 37.6 5.1 32 40-74 5-36 (250)
500 TIGR01202 bchC 2-desacetyl-2-h 77.9 6.5 0.00014 37.9 6.8 86 40-132 146-231 (308)
No 1
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=100.00 E-value=4.4e-84 Score=635.27 Aligned_cols=344 Identities=85% Similarity=1.270 Sum_probs=314.1
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCc
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
|.++.+++||+|+|||||+|++|+|+|.+++||.+++..++|.+++|+.+.+.+.++.+.+++++.+.++|+||+|+|++
T Consensus 1 ~~~~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~ 80 (344)
T PLN02383 1 MALTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS 80 (344)
T ss_pred CCccCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH
Confidence 34455679999999999999999999999888999999999999999999887667777777766778999999999999
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEE
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRM 192 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v 192 (376)
.++++++++.++|++|||+|++||+++++||++||||++.++..+.+..+.++|||||||+|+++++|+||+++++|++|
T Consensus 81 ~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIanPgC~~t~~~laL~PL~~~~~i~~v 160 (344)
T PLN02383 81 ISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRM 160 (344)
T ss_pred HHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEECCCcHHHHHHHHHHHHHHcCCeeEE
Confidence 99999999999999999999999999999999999999999853211112459999999999999999999999999999
Q ss_pred EEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEE
Q 017153 193 VVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVT 272 (376)
Q Consensus 193 ~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~ 272 (376)
+|++|||+||||+++++++++|+..++++++..+++++++++||++||+|.+.++|++++|.++++|++|+++...++|+
T Consensus 161 vv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~g~~~~E~~~~~e~~kil~~~~~~v~ 240 (344)
T PLN02383 161 VVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDVKVT 240 (344)
T ss_pred EEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccCCCChHHHHHHHHHHHHhCCCCCeEE
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999977778899
Q ss_pred EEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCCCCeEE
Q 017153 273 ATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLD 352 (376)
Q Consensus 273 ~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~ 352 (376)
||||||||+|||+.++|++++++++.++++++|+++|||++++...++.+|+|+++.|+|+|+|||+|+|...++.++++
T Consensus 241 ~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~p~v~v~~~~~~~~~p~p~~v~g~~~v~Vgr~r~~~~~~~~~~l~ 320 (344)
T PLN02383 241 ATCIRVPVMRAHAESINLQFEKPLDEATAREILASAPGVKIIDDRANNRFPTPLDASNKDDVAVGRIRQDISQDGNKGLD 320 (344)
T ss_pred EEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcCCCCEEEeCCCcCCCCccceeCCCceEEEEEEEccCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999976444468999999999999999999875323226899
Q ss_pred EEEEechHHhhHHHHHHHHHHhcC
Q 017153 353 IFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 353 ~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+|+++|||+||||||||||||+|+
T Consensus 321 ~~~~~DNL~kGAAg~AVq~an~~~ 344 (344)
T PLN02383 321 IFVCGDQIRKGAALNAVQIAELLL 344 (344)
T ss_pred EEEEEhHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999985
No 2
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=7.9e-82 Score=616.03 Aligned_cols=329 Identities=41% Similarity=0.697 Sum_probs=308.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeE---EEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRS---IKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~---l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
+.+||||+|||||+|++|+++|.+| |+++ +..++|.+++|+.+.+.++++.+++++++.|.++|+||+|+|++++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h--~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKE--TKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHC--CCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHH
Confidence 4589999999999999999999976 6666 8889999999999988777888888887778899999999999999
Q ss_pred hhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEE
Q 017153 115 KKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v 194 (376)
+++++++.++|++|||+|++||+++++||++||||+++++. ..++|||||||+|+++++|+||+++++|++++|
T Consensus 82 ~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~------~~~iIanPnC~tt~~~laL~PL~~~~~i~~v~V 155 (347)
T PRK06728 82 RQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKE------HKGIIAVPNCSALQMVTALQPIRKVFGLERIIV 155 (347)
T ss_pred HHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhc------cCCEEECCCCHHHHHHHHHHHHHHcCCccEEEE
Confidence 99999999999999999999999999999999999999983 236999999999999999999999999999999
Q ss_pred EEEccccccChHhHHHHHHHhhhhhcCCCCCccccc-------ccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCC
Q 017153 195 STYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS-------QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDK 267 (376)
Q Consensus 195 ~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~-------~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~ 267 (376)
+||||+||||++++++|.+|+..+++|++.++..|+ .+++||+|||++.+.++||++||+|++.|++|||+.+
T Consensus 156 ~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~~g~t~EE~K~~~E~~KIL~~~ 235 (347)
T PRK06728 156 STYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDP 235 (347)
T ss_pred EEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccccCCccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999888888999 9999999999999999999999999999999999888
Q ss_pred CCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCC
Q 017153 268 DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDG 347 (376)
Q Consensus 268 ~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~ 347 (376)
++.|++||+||||++||+.+++++|+++++.++++++|+++|+|.+++++..+.||+|+++.|++.|+|||+|+|.. .
T Consensus 236 ~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~gi~~~d~p~~~~~ptP~~~~g~~~v~VGRiR~d~~--~ 313 (347)
T PRK06728 236 NLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPD--T 313 (347)
T ss_pred CCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCCCCEEeCCCcccCCcCccccCCCCeEEEeCccccCC--C
Confidence 89999999999999999999999999999999999999999999999775555699999999999999999998754 3
Q ss_pred CCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 348 NHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 348 ~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
.+.+++|++.|||+||||+||||++|+|+
T Consensus 314 ~~~l~~w~~~DNlr~GAA~nav~iaE~l~ 342 (347)
T PRK06728 314 PNGFHLWIVSDNLLKGAAWNSVQIAETMV 342 (347)
T ss_pred CCeEEEEEEechHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999873
No 3
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=9.1e-81 Score=608.32 Aligned_cols=327 Identities=33% Similarity=0.549 Sum_probs=302.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+++||||+|||||+|++|+|+|.+|+||.+++..++|++++|+.+.+.+.++.+++.+..+|.++|+||+|+|+++++++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~ 82 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY 82 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence 47999999999999999999999988899999999999999999998767788876666667899999999999999999
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEE
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~ 197 (376)
++++.++|++|||+|++||+++++||++||+|++.++.++ +.++|||||||+|+++++|+||++.++|++++|++|
T Consensus 83 ~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~----~~~iIAnPgC~~t~~~laL~PL~~~~~i~~viV~t~ 158 (336)
T PRK08040 83 AEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR----NRNIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNL 158 (336)
T ss_pred HHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc----cCCEEECCCHHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence 9999999999999999999999999999999996555331 578999999999999999999999999999999999
Q ss_pred ccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEE
Q 017153 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIR 277 (376)
Q Consensus 198 ~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~ 277 (376)
||+|||||+++++|++||.++++|++.++..|+.++++|++|++++ |+|++.+|+++..|++++|+..++.|+|||||
T Consensus 159 qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~--~~g~~~~erh~~~Ei~kiL~~~~~~vs~t~~~ 236 (336)
T PRK08040 159 LSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPD--SEGSVREERRLVDQVRKILQDEGLPISVSCVQ 236 (336)
T ss_pred ccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCC--cCCcchHhhhhHHHHHHHhCCCCCeEEEEeEE
Confidence 9999999999999999999999998888889999999999999997 78999999998999999997667889999999
Q ss_pred ecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcc-ccccCCCceEEEEEEeccCCCCCCeEEEEEE
Q 017153 278 VPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVC 356 (376)
Q Consensus 278 VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~ 356 (376)
|||+|||++++|++++++++.++++++|+++|||+|+++ +.+|+| +++.|+|+|+|||++.+.+ .++++++|++
T Consensus 237 vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~p~v~v~~~---~~~P~~~~~v~g~n~~~Vgr~~~~~~--~~~~l~~~~~ 311 (336)
T PRK08040 237 SPVFYGHAQMVHFEALRPLAAEEARDALEQGEDIVLSEE---NDYPTQVGDASGNPHLSIGCVRNDYG--MPEQLQFWSV 311 (336)
T ss_pred ecchhcEEEEEEEEECCCCCHHHHHHHHhcCCCEEEECC---CCCCCchhHcCCCceEEEEEEEccCC--CCCEEEEEEE
Confidence 999999999999999999999999999999999999965 348999 7999999999999996532 2489999999
Q ss_pred echHHhhHHHHHHHHHHhc
Q 017153 357 GDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 357 ~DNL~kGAAgqAvq~~nl~ 375 (376)
+|||+|||||||||++|++
T Consensus 312 ~DNL~KGAAg~AVQiae~l 330 (336)
T PRK08040 312 ADNVRFGGALMAVKTAEKL 330 (336)
T ss_pred ehhHHHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 4
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=9.2e-80 Score=602.53 Aligned_cols=328 Identities=35% Similarity=0.583 Sum_probs=303.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
++||+|+|||||+|++|+|+|.+++||.++++.+.|++++|+.+.+.+.++.+.+.++++|.++|+||+|+|++++.+++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~~s~~~v 83 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAVSRSFA 83 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHHHHHHHH
Confidence 48999999999999999999998778999999999999999998876667777776666678999999999999999999
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~ 198 (376)
+++.++|++|||+|++||++ ++||++||||+++++.++ +.++|||||||+|+++++|+||++.+++++++|++||
T Consensus 84 ~~~~~~G~~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~----~~~iIAnPgC~~t~~~laL~PL~~~~~~~~v~v~t~~ 158 (336)
T PRK05671 84 EKARAAGCSVIDLSGALPSA-QAPNVVPEVNAERLASLA----APFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACL 158 (336)
T ss_pred HHHHHCCCeEEECchhhcCC-CCCEEecccCHHHHcccc----CCCEEECCCcHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 99999999999999999996 789999999999998431 3789999999999999999999988889999999999
Q ss_pred cccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEe
Q 017153 199 AASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRV 278 (376)
Q Consensus 199 gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~V 278 (376)
|+||||++++++|+.|+.+++++++.++..|+++++||++||++++.++|+++||+|.+.|++|+|+..++.|+||||||
T Consensus 159 ~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~v 238 (336)
T PRK05671 159 AVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQV 238 (336)
T ss_pred cCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEe
Confidence 99999999999999999888888888888999999999999999999999999999999999999987778899999999
Q ss_pred cccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcc-ccccCCCceEEEEEEeccCCCCCCeEEEEEEe
Q 017153 279 PVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCG 357 (376)
Q Consensus 279 Pv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~ 357 (376)
||+|||+.++|++++++++.++++++|+++|||+++++ +.+|+| +++.|+|+|+|||+|.|.. .++++++|+++
T Consensus 239 Pv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~~v~v~~~---~~~p~~~~~v~g~~~~~vg~~~~~~~--~~~~l~~~~~~ 313 (336)
T PRK05671 239 PVFFGDSLSVALQSAAPVDLAAVNAALEAAPGIELVEA---GDYPTPVGDAVGQDVVYVGRVRAGVD--DPCQLNLWLTS 313 (336)
T ss_pred chhhhEeeEEEEEECCCCCHHHHHHHHhCCCCeEEeCC---CCCCCChHHcCCCCeEEEEEEEecCC--CCCEEEEEEEe
Confidence 99999999999999999999999999999999999965 348999 6999999999999996532 34899999999
Q ss_pred chHHhhHHHHHHHHHHhcC
Q 017153 358 DQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 358 DNL~kGAAgqAvq~~nl~~ 376 (376)
|||+||||+|||||||+++
T Consensus 314 DNL~kGAA~~AVq~~~~l~ 332 (336)
T PRK05671 314 DNVRKGAALNAVQVAELLI 332 (336)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999873
No 5
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-77 Score=587.79 Aligned_cols=331 Identities=56% Similarity=0.894 Sum_probs=299.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
+||+|+|||||+|++|+|+|.+|+||.+++++++++++.|+.+.+.+.++.+.+.+...|.++|+||+|+|++.++++++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~ 81 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYAP 81 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHHH
Confidence 79999999999999999999998889999999999889999887765566666655556789999999999999999999
Q ss_pred HHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEcc
Q 017153 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQA 199 (376)
Q Consensus 120 ~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~g 199 (376)
++.++|++|||+|++||+++++||++||+|++.++... +.++|||||||+|+++++|+||+++++|+++++||+||
T Consensus 82 ~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~----~~~iVanp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~ 157 (334)
T PRK14874 82 KAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHR----KKGIIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQA 157 (334)
T ss_pred HHHhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhh----cCCeEECccHHHHHHHHHHHHHHHhcCceEEEEEEEec
Confidence 99999999999999999998899999999999997310 13799999999999999999999999999999999999
Q ss_pred ccccChHhHHHHHHHhhhhhc--CCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEE
Q 017153 200 ASGAGAAAMEELELQTREVLE--GKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIR 277 (376)
Q Consensus 200 vSGaGr~~~~~l~~q~~~~~~--~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~ 277 (376)
+||||++++++++.|+.+.++ +++.++.+++++++||++||++++.++|.+.||+|+++|+.++++.+.++|+|||||
T Consensus 158 ~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~eE~ki~~el~~il~~~~~~v~~t~~r 237 (334)
T PRK14874 158 VSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDLKVSATCVR 237 (334)
T ss_pred hhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCcHHHHHHHHHHHHHhCCCCCeEEEEEEE
Confidence 999999999999888887775 334456778999999999999988899999999999999999996667789999999
Q ss_pred ecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCCCCeEEEEEEe
Q 017153 278 VPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCG 357 (376)
Q Consensus 278 VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~ 357 (376)
|||+|||+.++|++++++++.+|++++|+++|||++++....+.+|+|+++.|+|+|+||+++.|.. .++++++|+++
T Consensus 238 vPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~~~v~~~~~~~~~~~p~~~~v~g~~~~~vg~~~~~~~--~~~~l~~~~~~ 315 (334)
T PRK14874 238 VPVFTGHSESVNIEFEEPISVEEAREILAEAPGVVLVDDPENGGYPTPLEAVGKDATFVGRIRKDLT--VENGLHLWVVS 315 (334)
T ss_pred cceeccEEEEEEEEECCCCCHHHHHHHHHcCCCCEEEeCCcccCCCCceeeCCCcceEEeceEecCC--CCCEEEEEEEE
Confidence 9999999999999999999999999999999999999754334589999999999999999887642 25789999999
Q ss_pred chHHhhHHHHHHHHHHhcC
Q 017153 358 DQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 358 DNL~kGAAgqAvq~~nl~~ 376 (376)
|||+||||||||||||+|+
T Consensus 316 DNl~kGAA~~avq~~e~~~ 334 (334)
T PRK14874 316 DNLRKGAALNAVQIAELLI 334 (334)
T ss_pred chHHHHHHHHHHHHHHHhC
Confidence 9999999999999999874
No 6
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=9.1e-78 Score=590.53 Aligned_cols=333 Identities=28% Similarity=0.377 Sum_probs=295.8
Q ss_pred CEEEEECcccHHHHHHHH-HHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-ccCCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr-~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+||||+|||||+|++|++ +|.++++|..+++.++++++.|+...+.++...+.+.. ++.|.++|+||+|+|+++++++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~~~ 81 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTNEV 81 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHHHH
Confidence 799999999999999998 55554555555888777666666666666555555533 5668899999999999999999
Q ss_pred HHHHHhCC--CeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEE
Q 017153 118 GPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVS 195 (376)
Q Consensus 118 ~~~~~~~G--~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~ 195 (376)
++++.++| |.|||+|++||+++++||++||||+++++... ..+-++|+||||++|+++++|+||++.++|++++|+
T Consensus 82 ~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~--~~g~~iIanPnC~tt~~~laL~PL~~~~~i~~viVs 159 (369)
T PRK06598 82 YPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDAL--ANGVKTFVGGNCTVSLMLMALGGLFKNDLVEWVSVM 159 (369)
T ss_pred HHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhh--hcCCCEEEcCChHHHHHHHHHHHHHhcCCceEEEEE
Confidence 99999999 66999999999999999999999999998310 001158999999999999999999999999999999
Q ss_pred EEccccccChHhHHHHHHHhhhhhc-------------------------CCCCCcccccccccccccccCCCCcCCCch
Q 017153 196 TYQAASGAGAAAMEELELQTREVLE-------------------------GKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 196 t~~gvSGaGr~~~~~l~~q~~~~~~-------------------------~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
||||+||||++++++|.+|+..+++ +++.++..|+++++||+|||++.+.++||+
T Consensus 160 t~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~I~~~~~~g~t 239 (369)
T PRK06598 160 TYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQS 239 (369)
T ss_pred eeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCCcccCCCcccccccCcCCCcccCCch
Confidence 9999999999999999999998765 677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh-CCCcEEeeCCCC--CCCCcc
Q 017153 251 EEEMKMVKETRKIWND--KDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN-APGVVVIDDRAS--NHFPTP 325 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~--~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~-~~~v~v~~~~~~--~~~p~~ 325 (376)
+||+|+++|++|||+. +.+.|++||+||||++||+.+++++|++++|.++++++|++ .|+|++++++.. ..||+|
T Consensus 240 ~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~i~~~L~~~~~gv~v~d~~~~~~~~yptP 319 (369)
T PRK06598 240 REEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIEEILAAHNPWVKVVPNDREATMRELTP 319 (369)
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhcCCCEEEecCccccccCCCCc
Confidence 9999999999999986 78899999999999999999999999999999999999998 699999987543 459999
Q ss_pred ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 326 LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 326 ~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
.++.|++.++|||+|+|.. .+++|++|+++||||||||.+|+|++|+++
T Consensus 320 ~~~~g~~~v~VGRiR~d~~--~~~~l~lw~v~DnlrkGAA~~~~~i~~~~~ 368 (369)
T PRK06598 320 AAVTGTLTIPVGRLRKLNM--GPEYLSAFTVGDQLLWGAAEPLRRMLRILL 368 (369)
T ss_pred cccCCCCcEEEecccccCC--CCCEEEEEEeechhhhhhHHHHHHHHHHHh
Confidence 9999999999999998765 348999999999999999999999999874
No 7
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=3.1e-76 Score=579.85 Aligned_cols=330 Identities=54% Similarity=0.861 Sum_probs=301.6
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHHH
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~~ 120 (376)
||+|+|||||+|++|+++|.+++||.++++.+++.++.|+.+.+.+.++.+.+++.+.|.++|+||+|+|++.+++++++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a~~ 80 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFAPK 80 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHHHH
Confidence 68999999999999999999988899999999999999999987666677777766677899999999999999999999
Q ss_pred HHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccc
Q 017153 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAA 200 (376)
Q Consensus 121 ~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gv 200 (376)
++++|++|||+|++||+++++||++||+|++.++.. ....+|||||||+|+++++|+||+++++|++++|+|+||+
T Consensus 81 ~~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~~----~~~~iianp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~v 156 (339)
T TIGR01296 81 AAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEF----NTKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAV 156 (339)
T ss_pred HHHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhhC----ccCCEEECCCcHHHHHHHHHHHHHHhcCccEEEEEeeech
Confidence 999999999999999999889999999999999731 0134999999999999999999999999999999999999
Q ss_pred cccChHhHHHHHHHhhhhhcCCCCCc-------ccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEE
Q 017153 201 SGAGAAAMEELELQTREVLEGKPPTC-------KIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTA 273 (376)
Q Consensus 201 SGaGr~~~~~l~~q~~~~~~~~~~~~-------~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~ 273 (376)
||+|++++++|++|+..++++.+.++ .+++++.+||+|||++++.++|++.||.|++.|++++++..+++|+|
T Consensus 157 SgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~ 236 (339)
T TIGR01296 157 SGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSA 236 (339)
T ss_pred hhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEE
Confidence 99999999999999998887765555 78899999999999998889999999999999999999866788999
Q ss_pred EEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCCCCeEEE
Q 017153 274 TCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDI 353 (376)
Q Consensus 274 t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~ 353 (376)
+||||||+|||+.++|++++++++.+|++++|+++|||++++.++.+.+|+|+++.|+|+|+|||+|.|.. .++++++
T Consensus 237 t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~~~v~v~~~~~~~~~p~~~~v~g~~~~~ig~~r~d~~--~~~~l~~ 314 (339)
T TIGR01296 237 TCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNAPGVVLIDDPSGNLYPTPLEAVGEDEVFVGRIRKDLS--DDNGLHL 314 (339)
T ss_pred EeEEccccccEEEEEEEEECCCCCHHHHHHHHhcCCCCEEeCCCccCCCCCCeEeCCCCeEEEEEEEecCC--CCCEEEE
Confidence 99999999999999999999999999999999999999999764334589999999999999999987643 3589999
Q ss_pred EEEechHHhhHHHHHHHHHHhcC
Q 017153 354 FVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 354 ~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
|+++|||+||||||||||||+++
T Consensus 315 ~~~~DNl~kGAA~~Avq~~e~~~ 337 (339)
T TIGR01296 315 WVVADNLRKGAALNSVQIAELLI 337 (339)
T ss_pred EEEEhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999864
No 8
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=1.2e-73 Score=559.49 Aligned_cols=331 Identities=26% Similarity=0.386 Sum_probs=302.5
Q ss_pred CEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
+||||+||||.||++++++|. +++||..++..++|+++.|+.+.+.++.+.++++++. .|.++|+||+|+|.++++++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 489999999999999999888 7788889999999999999998887777788887664 78999999999999999999
Q ss_pred HHHHHhCC--CeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcE--EEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 118 GPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL--IANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 118 ~~~~~~~G--~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~i--Va~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
++++.++| |.|||+|++|||++++|+++||||++.+... ....+ |+||||++++++++|+||++.++|++++
T Consensus 81 ~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~----~~~gi~~ianPNCst~~l~~aL~pL~~~~~i~~v~ 156 (366)
T TIGR01745 81 YPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDG----LNNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVS 156 (366)
T ss_pred HHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhH----HhCCcCeEECcCHHHHHHHHHHHHHHhccCccEEE
Confidence 99999999 8899999999999999999999999988741 01345 8999999999999999999999999999
Q ss_pred EEEEccccccChHhHHHHHHHhhhhhc--------CC-----------------CCCcccccccccccccccCCCCcCCC
Q 017153 194 VSTYQAASGAGAAAMEELELQTREVLE--------GK-----------------PPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 194 v~t~~gvSGaGr~~~~~l~~q~~~~~~--------~~-----------------~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
|+|||++||||++++++|.+|+..+++ +. +.++..|+++++||+|||++.+.++|
T Consensus 157 VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~fp~~iafNvIP~Ig~~~~~g 236 (366)
T TIGR01745 157 VATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNG 236 (366)
T ss_pred EEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCCCCcccCCCcccccccCcCCCccCCC
Confidence 999999999999999999999998766 33 55678899999999999999999999
Q ss_pred chHHHHHHHHHHHHHhCC-CCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh-CCCcEEeeCC--CCCCCCc
Q 017153 249 YNEEEMKMVKETRKIWND-KDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN-APGVVVIDDR--ASNHFPT 324 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~-~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~-~~~v~v~~~~--~~~~~p~ 324 (376)
|++||+|++.|++|||+. ..+.|++||+||||++||+.+++++++++++.++++++|++ .|+|++++++ ....||+
T Consensus 237 ~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~i~~~L~~~~~gv~v~d~~~~~~~~ypt 316 (366)
T TIGR01745 237 QSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEEIIRAHNPWVKVVPNDREITMRELT 316 (366)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHhCCCCEEEecCCcccccCCcC
Confidence 999999999999999987 78999999999999999999999999999999999999999 5999999875 2344999
Q ss_pred cccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 325 PLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 325 ~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
|.++.|++.|+|||+|+|.. .++++++|+++||||||||.+--..+|+++
T Consensus 317 P~~~~G~d~v~VGRiR~d~~--~~~~l~lw~v~DnlrkGAA~~~~~~~~~~~ 366 (366)
T TIGR01745 317 PAAVTGTLTIPVGRLRKLNM--GPEYLSAFTVGDQLLWGAAEPLRRMLRILA 366 (366)
T ss_pred CcccCCCCceEEeccccCCC--CCCEEEEEEeechhhhhhHhHHHHHHHHhC
Confidence 99999999999999998765 348999999999999999999988888864
No 9
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-73 Score=544.86 Aligned_cols=328 Identities=52% Similarity=0.812 Sum_probs=294.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce-eeecCcceEEee--cCccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEE--LTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~-~~~~~~~~~v~~--~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
++||||+||||.||++++++|.+++||..++.+++|.+++|+. ..+++..+.+.+ .+.+.|.++|+||+|.|..+++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~ 80 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK 80 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHH
Confidence 4799999999999999999999965555557788999999998 667655555655 4566788999999999999999
Q ss_pred hhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCC-cEEEcCCchHHHHHHHHhHHHHhCCCcEEEE
Q 017153 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKG-ALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~-~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v 194 (376)
++++++.++||.|||+|+.|||++|+|+++||||++.+.... +. +||+||||+++.++++|+||+++++|+++.|
T Consensus 81 ~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~----~rg~IianpNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 81 EVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQ----KRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred HHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhh----hCCCEEECCChHHHHHHHHHHHHHhhcCceEEEE
Confidence 999999999999999999999999999999999999987532 12 5999999999999999999999999999999
Q ss_pred EEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEE
Q 017153 195 STYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTAT 274 (376)
Q Consensus 195 ~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t 274 (376)
+|||++||||+++++++.+|+...+++.++.+. +.++|||+|||+..+.++||++||+|+..|++|||+...+.|++|
T Consensus 157 sTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~--~~~iAfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~Vsat 234 (334)
T COG0136 157 STYQAVSGAGAEGGVELAGQTDALLNGIPILPI--GYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSAT 234 (334)
T ss_pred EEeehhhhcCccchhhHHHHHhhhccCcccccc--cccccccccccCCccccCCccHHHHHHHHHHHHHhCCCCCceEEE
Confidence 999999999999999999999988777655444 789999999999999999999999999999999999888999999
Q ss_pred EEEecccceeEeeEEEEeCCCCCHHHHH-HHHHhCCCcEEeeCCCCCCCC-ccccccCCCceEEEEEEeccCCCCCCeEE
Q 017153 275 CIRVPVMRAHAESVNLQFEKPLDEDTAR-DILKNAPGVVVIDDRASNHFP-TPLEVSNKDDVAVGRIRRDVSQDGNHGLD 352 (376)
Q Consensus 275 ~~~VPv~rG~~~ti~v~l~~~~s~~ei~-~~~~~~~~v~v~~~~~~~~~p-~~~~v~g~~~v~vg~~~~~~~~~~~~~~~ 352 (376)
|+||||++||+.+++++++++++.+|++ +++.++|++.+++... .+| +|.++.|++.+.|||+|+|.. ..+.+.
T Consensus 235 cvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~ap~v~v~~~~~--~~P~~~~d~~g~~~v~VGRiR~d~~--~~~~l~ 310 (334)
T COG0136 235 CVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAPGVVVVDNPE--DRPQTPLDATGGDEVSVGRIRKDLS--GPEGLK 310 (334)
T ss_pred EEEcceecccceEEEEEecCCCCHHHHHHHHhccCCCcEEEeCCc--cCccChhhhcCCCceEEeEeeecCC--CCCcEE
Confidence 9999999999999999999999999999 5577789999998754 578 556999999999999998854 347799
Q ss_pred EEEEechHHhhHHHHHHHHHHhcC
Q 017153 353 IFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 353 ~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+|++.|||+||||+++||+||+++
T Consensus 311 ~~~v~dNl~~GAA~~av~iaE~L~ 334 (334)
T COG0136 311 LWVVGDNLRKGAALNAVLIAELLL 334 (334)
T ss_pred EEEEechhhhhhHHHHHHHHHhhC
Confidence 999999999999999999999764
No 10
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-73 Score=541.35 Aligned_cols=308 Identities=22% Similarity=0.344 Sum_probs=285.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+++||| ||||.+|++++++|.+++||.-++..+.++ ++.|+.+.|+++++.++++++++|.++|++|+ .+.+++++|
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-ag~~~s~~~ 80 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-AGKMAQAEH 80 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-cCHHHHHHH
Confidence 689999 999999999999999999999999999998 99999999998999999999889999999999 999999999
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEE
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~ 197 (376)
++.+.++||.|||+|++|||++++|+++||+|++.++.++ +..||+||||+|++++++|+||++.++|++++++||
T Consensus 81 ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~----~~~IIanPNCsTi~l~~aL~pL~~~~~l~rv~VsTy 156 (322)
T PRK06901 81 LAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELR----QRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVTSL 156 (322)
T ss_pred HHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCc----CCCEEECCcHHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 9999999999999999999999999999999999998531 246999999999999999999999999999999999
Q ss_pred ccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCC-cEEEEEE
Q 017153 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDV-RVTATCI 276 (376)
Q Consensus 198 ~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~-~v~~t~~ 276 (376)
|++||+|++|+++|.+|+..++++++..+.. ++++||++||++. ++++|++||| +++ +|+.||+
T Consensus 157 QavSGaG~~gv~eL~~qt~~~~n~~~~~~~~--~~iAFNviP~ig~-----------~m~~EtrKIl--~~l~~VsaTcV 221 (322)
T PRK06901 157 LPASYTDAETVKKLAGQTARLLNGIPLDEEE--QRLAFDVFPANAQ-----------NLELQLQKIF--PQLENVTFHSI 221 (322)
T ss_pred cchhhcCHhHHHHHHHHHHHHhCCCCCCCCc--eeeeccccccCCc-----------cHHHHHHHHh--CCcccEEEEEE
Confidence 9999999999999999999999987654443 8999999999984 2678899999 466 8999999
Q ss_pred EecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcccc---c-cCCCc--eEEEEEEeccCCCCCCe
Q 017153 277 RVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLE---V-SNKDD--VAVGRIRRDVSQDGNHG 350 (376)
Q Consensus 277 ~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~---v-~g~~~--v~vg~~~~~~~~~~~~~ 350 (376)
||||++||+.+++++++++++.++++++|+++|+|.+++++ ||+|.+ + .|++. ++|||+|.+ + ++
T Consensus 222 RVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~gv~l~d~~----yPtPi~~~~~~~g~d~vvv~Vgrir~~---~--~~ 292 (322)
T PRK06901 222 QVPVFYGLAQMVTALSEYELDIESQLAEWQQNNLLRYHEEK----LITPVLNGENENGEESVKLHISQLSAV---E--NG 292 (322)
T ss_pred EcceeccEEEEEEEEECCCCCHHHHHHHHHhCCCcEEeCCC----CCCCcccccccCCCCCccEEEEccccC---C--CE
Confidence 99999999999999999999999999999999999999753 999997 6 79999 999999852 3 89
Q ss_pred EEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 351 LDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 351 ~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
|++|++.||||||||.||||++|+|+
T Consensus 293 l~lwvvaDNlRkGAA~NAVqIaE~l~ 318 (322)
T PRK06901 293 VQFWSVADEQRFNLAFLAVKLLELIY 318 (322)
T ss_pred EEEEEEechHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999874
No 11
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-72 Score=537.41 Aligned_cols=300 Identities=23% Similarity=0.345 Sum_probs=258.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC------cceEEeecCccC--CCCCcEEEEcC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD------KAYTVEELTEDS--FDGVDIALFSA 109 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~------~~~~v~~~~~~~--~~~~DvVf~a~ 109 (376)
+++||+|+|||||+|.||+|+|.+| |++|+..++|++.+|+.++... .++.+..++++. ..++|+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H--p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC--CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEec
Confidence 3699999999999999999999998 9999888888888999877522 224444444444 35699999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCCCCCCC-------------------CCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMV-------------------ENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~~~R~~-------------------~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
|+++|+++++++.+.|++|||+|+|||++ +++.||+||+++++|+ ++++|||||
T Consensus 79 Phg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~-------~A~lIAnPG 151 (349)
T COG0002 79 PHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIR-------GAKLIANPG 151 (349)
T ss_pred CchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHh-------cCCEeeCCC
Confidence 99999999999999999999999999998 4578999999999998 799999999
Q ss_pred chHHHHHHHHhHHHHhCCCc--E-EEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCC
Q 017153 171 CSTIICLMAATPLHRRAKVT--R-MVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~--~-v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~ 247 (376)
||+||.+++|+||.+...|+ . ++|++++|+|||||++... .++ +++.++..+|++.-|+|. ||
T Consensus 152 CypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~-------~~~-----~e~~~~~~~Y~~~~HrH~-pE- 217 (349)
T COG0002 152 CYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVK-------NHF-----PEVNDSLRPYGLTGHRHT-PE- 217 (349)
T ss_pred chHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCcccc-------ccc-----hhhccccccccccccCch-HH-
Confidence 99999999999999998764 4 6999999999999998874 233 556668899999999999 88
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCCC
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHFP 323 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~p 323 (376)
++|++ .++-+ ....++||||.+|+.|||++|+|+.+++.++.+|++++|++ .|||||++.. .+|
T Consensus 218 --i~q~l------~~l~~-~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~---~~P 285 (349)
T COG0002 218 --IEQHL------GRLAG-RKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEG---GYP 285 (349)
T ss_pred --HHHHh------hhccc-CcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecCC---CCC
Confidence 66664 33333 44669999999999999999999999999999999999887 5999999753 589
Q ss_pred ccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 324 TPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 324 ~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
++++|.|||+|+||. ..| +++++++++++||||+||||||||||||+|+
T Consensus 286 ~~k~V~GsN~cdIgf-~~d---~~~~rvvvvsaIDNL~KGAAGQAVQnmNim~ 334 (349)
T COG0002 286 DTKAVAGSNFCDIGF-AVD---ERTGRVVVVSAIDNLVKGAAGQAVQNMNIMF 334 (349)
T ss_pred ChhhhcCCcceEEEE-EEc---CCCCEEEEEEEeccccccHHHHHHHHHHHHc
Confidence 999999999999994 444 3568999999999999999999999999985
No 12
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=100.00 E-value=2.4e-70 Score=539.89 Aligned_cols=298 Identities=25% Similarity=0.389 Sum_probs=258.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeeecCc------ceEEeecCccCC-CCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQDK------AYTVEELTEDSF-DGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~~~~------~~~v~~~~~~~~-~~~DvVf~a~~~ 111 (376)
|||+|+|||||+|++++++|.+| |.++++.+ .|+++.|+.+..... ++.+.+.+.+++ .++|+||+|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCc
Confidence 58999999999999999999987 99999965 677778886652111 233444444445 489999999999
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCCCCCC-------------------CCcEEeeccCHHhhcCcccCCCCCcEEEcCCch
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAFRMVE-------------------NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~R~~~-------------------~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~ 172 (376)
+.++++++++.++|++|||+|++||+++ +++|++||+|+++++ +.++|||||||
T Consensus 79 ~~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~-------~~~iianPgC~ 151 (346)
T TIGR01850 79 GVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIK-------GARLIANPGCY 151 (346)
T ss_pred hHHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhC-------CCcEEEcCCcH
Confidence 9999999999999999999999999987 689999999999998 68899999999
Q ss_pred HHHHHHHHhHHHHhCCCc--EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 173 TIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 173 ~ta~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
+|+++++|+||++.++|+ +++|+++||+|||||++++++. + .++.++..+||++||+|+ +|
T Consensus 152 ~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~-------~-----~~~~~~~~~y~~~~h~h~-~E---- 214 (346)
T TIGR01850 152 PTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANH-------F-----PEVNENLRPYKVTGHRHT-PE---- 214 (346)
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCcccccc-------c-----hhhcCCeeeeccCCcCcH-HH----
Confidence 999999999999999887 7999999999999999998652 2 233456779999999998 55
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHH----hCCCcEEeeCCCCCCCCccc
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILK----NAPGVVVIDDRASNHFPTPL 326 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~----~~~~v~v~~~~~~~~~p~~~ 326 (376)
+.+|++++++ .+++|+||||||||+|||+.++|++++++++.++++++|+ ++|||+|.++ +.+|+|+
T Consensus 215 -----i~~~l~~~~~-~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~V~v~~~---~~~p~~~ 285 (346)
T TIGR01850 215 -----IEQELGRLAG-GKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFYADEPFVRVLPE---GEYPSTK 285 (346)
T ss_pred -----HHHHHHHhcC-CCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHhCCCCcEEEeCC---CCCcChH
Confidence 4445677776 5678999999999999999999999999999999999998 5799999865 3589999
Q ss_pred cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 327 EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 327 ~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
++.|+|+|+|| ++.|. .++++++|+++|||+||||||||||||+|+
T Consensus 286 ~v~g~n~~~ig-~~~d~---~~~~l~~~~~~DNL~KGAAg~AVq~~n~~~ 331 (346)
T TIGR01850 286 AVIGSNFCDIG-FAVDE---RTGRVVVVSAIDNLVKGAAGQAVQNMNLMF 331 (346)
T ss_pred HhcCCCeEEEE-EEEcC---CCCEEEEEEEeechhhhHHHHHHHHHHHHc
Confidence 99999999999 77763 357999999999999999999999999985
No 13
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=100.00 E-value=4.1e-68 Score=528.31 Aligned_cols=312 Identities=19% Similarity=0.253 Sum_probs=254.4
Q ss_pred ceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC-----cce-EEeecCccCCC
Q 017153 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-----KAY-TVEELTEDSFD 100 (376)
Q Consensus 27 ~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~-----~~~-~v~~~~~~~~~ 100 (376)
.|+..+.....+++||+|+|||||+|++|+|+|.+| |++++..++++++.|+.+.+.. .+. .+.+.+.+++.
T Consensus 26 ~~~~~~~~~~~~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~ 103 (381)
T PLN02968 26 VSSASSSVKSEEKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS 103 (381)
T ss_pred cccCCCccccccccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc
Confidence 444444444456789999999999999999999998 9999999999888998776422 122 24444444568
Q ss_pred CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCC--------Cc-----------EEeeccCHHhhcCcccCCC
Q 017153 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN--------VP-----------LVIPEVNPEAMSGIKVGMG 161 (376)
Q Consensus 101 ~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~--------~~-----------~~lpevN~~~i~~~~~~~~ 161 (376)
++|+||+|+|++.+.++++.+ ++|++|||+|++||++++ +| |++||+|+++++
T Consensus 104 ~~DvVf~Alp~~~s~~i~~~~-~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~------- 175 (381)
T PLN02968 104 DVDAVFCCLPHGTTQEIIKAL-PKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIK------- 175 (381)
T ss_pred CCCEEEEcCCHHHHHHHHHHH-hCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhc-------
Confidence 899999999999999999996 689999999999999986 33 899999999987
Q ss_pred CCcEEEcCCchHHHHHHHHhHHHHhCCC--cEEEEEEEccccccChHhHHH-HHHHhhhhhcCCCCCccccccccccccc
Q 017153 162 KGALIANPNCSTIICLMAATPLHRRAKV--TRMVVSTYQAASGAGAAAMEE-LELQTREVLEGKPPTCKIFSQQYAFNLF 238 (376)
Q Consensus 162 ~~~iVa~PgC~~ta~~l~L~pL~~~~~i--~~v~v~t~~gvSGaGr~~~~~-l~~q~~~~~~~~~~~~~~~~~~~a~nii 238 (376)
++++|||||||+|+++++|+||+++++| ++++|+++||+|||||+++++ +..|+. ++..+|++.
T Consensus 176 ~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~-------------~n~~~y~~~ 242 (381)
T PLN02968 176 SARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIA-------------EGIGAYGVT 242 (381)
T ss_pred CCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhc-------------ccceeeccC
Confidence 6889999999999999999999999999 689999999999999999986 332222 122344444
Q ss_pred ccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh-CCCcEEeeCC
Q 017153 239 SHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN-APGVVVIDDR 317 (376)
Q Consensus 239 ph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~-~~~v~v~~~~ 317 (376)
-|+|. +| +++++ .++++ .+..|+||||||||+|||+.++|++++++++.++++++|++ ++.+.+++..
T Consensus 243 ~h~h~-pE---ie~~~------~~~~~-~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~~ 311 (381)
T PLN02968 243 RHRHV-PE---IEQGL------ADAAG-SKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKVL 311 (381)
T ss_pred CCCCc-ch---HHHHH------HHHhC-CCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEeC
Confidence 45555 44 44443 35554 46789999999999999999999999999999999999998 4444344332
Q ss_pred CCCCCCccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 318 ASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 318 ~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.+.+|+|+++.|+|+|+||+++.+ .++++++|+++|||+||||||||||||+|+
T Consensus 312 ~~~~~P~~~~v~gtn~~~ig~~~~~----~~~~l~~~~~~DNL~KGAAgqAVQ~~nl~~ 366 (381)
T PLN02968 312 ERGAVPHTDHVRGSNYCELNVFADR----IPGRAIIISVIDNLVKGASGQAVQNLNLMM 366 (381)
T ss_pred CCCCCCChHHHCCCCcEEEEEEEeC----CCCEEEEEEEeccHHHHHHHHHHHHHHHHh
Confidence 3345899999999999999999853 348999999999999999999999999984
No 14
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=100.00 E-value=4.6e-68 Score=509.85 Aligned_cols=291 Identities=18% Similarity=0.236 Sum_probs=247.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~~ 118 (376)
.||+|+|||||+|.||+|+|.+| |+++++.+++++. +...+.+. +.++|+||+|+|++++++++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~~~-------------~~~~~~~~~~~~~D~vFlalp~~~s~~~~ 66 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPDRR-------------KDAAERAKLLNAADVAILCLPDDAAREAV 66 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecccc-------------cCcCCHhHhhcCCCEEEECCCHHHHHHHH
Confidence 58999999999999999999998 9999999987643 11112222 36899999999999999999
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcE---EEEE
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTR---MVVS 195 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~---v~v~ 195 (376)
+++.++|++|||+|++||++++++|++||+|.+..+.++ ++++|||||||+|+++++|+||++.+.|++ ++++
T Consensus 67 ~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~----~a~lIAnPgC~aTa~~LaL~PL~~~~li~~~~~~~~~ 142 (310)
T TIGR01851 67 SLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR----NSKRIANPGCYPTGFIALMRPLVEAGILPADFPITIN 142 (310)
T ss_pred HHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc----cCCEEECCCCHHHHHHHHHHHHHHcCCccccceEEEE
Confidence 999999999999999999999999999999655443221 688999999999999999999999988853 7899
Q ss_pred EEccccccChHhHHHHHHHhhhhhcCCCCCccccccccccccc-ccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEE
Q 017153 196 TYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLF-SHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTAT 274 (376)
Q Consensus 196 t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~nii-ph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t 274 (376)
++||+|||||++++++++|+. + .++.++.++|++. .|+|. || |+|+++ .. ..+.||
T Consensus 143 a~SG~SGAGr~~~~~l~~q~~---~-----~e~~~~~~~Y~~~~~HrH~-pE---i~q~l~----------~~-~~v~Ft 199 (310)
T TIGR01851 143 AVSGYSGGGKAMIADYEQGSA---D-----NPSLQPFRIYGLALTHKHL-PE---MRVHSG----------LA-LPPIFT 199 (310)
T ss_pred eccccCccChhhhHHhhhccc---c-----hhhccCceeccCCCCCCcH-HH---HHHHhC----------CC-CCEEEE
Confidence 999999999999998766543 1 4566778899999 99999 87 666542 11 569999
Q ss_pred EEEecccceeEeeEEEEe---CCCCCHHHHHHHHHh----CCCcEEeeCCC----CCCCCccccccCCCceEEEEEEecc
Q 017153 275 CIRVPVMRAHAESVNLQF---EKPLDEDTARDILKN----APGVVVIDDRA----SNHFPTPLEVSNKDDVAVGRIRRDV 343 (376)
Q Consensus 275 ~~~VPv~rG~~~ti~v~l---~~~~s~~ei~~~~~~----~~~v~v~~~~~----~~~~p~~~~v~g~~~v~vg~~~~~~ 343 (376)
||.+|++||++.|+|+++ +++++.+|++++|++ +|||+|++... ++.+|++++|.|||+|+|+... |
T Consensus 200 Phl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~epfVrv~~~~~~~~~~~~~p~~k~v~gtn~~~i~~~~-d- 277 (310)
T TIGR01851 200 PAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRVAPLDDVETLDNTFLDPQGLNGTNRLDLFVFG-S- 277 (310)
T ss_pred eEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCCCCcEEEecCCcccccccCCCChHHhCCCceEEEEEEE-c-
Confidence 999999999999999999 888999999888886 59999985431 1237999999999999999876 3
Q ss_pred CCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 344 SQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 344 ~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
++++++++++++|||+||||||||||||+|+
T Consensus 278 --~~~~~~vv~saiDNL~KGAaGqAvQnmNlm~ 308 (310)
T TIGR01851 278 --DDGERALLVARLDNLGKGASGAAVQNLNIML 308 (310)
T ss_pred --CCCCEEEEEEEccccccchHHHHHHHHHHHc
Confidence 3568999999999999999999999999985
No 15
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00 E-value=6.7e-67 Score=515.03 Aligned_cols=296 Identities=26% Similarity=0.400 Sum_probs=254.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC---c---ceEEeecCccCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD---K---AYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~---~---~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
++||+|+||||++|+++++.|.++ |.++++++.++++.|+.+.... . ...+.+.+...+.++|+||+|+|++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG 79 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence 489999999999999999999987 9999999988777776654211 1 2234444433456899999999999
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCCCCCC-C------------------CcEEeeccCHHhhcCcccCCCCCcEEEcCCchH
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAFRMVE-N------------------VPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~R~~~-~------------------~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ 173 (376)
.+.++++++.++|+.|||+|++||+++ + ++|++||+|+++++ ++++|||||||+
T Consensus 80 ~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~-------~~~iIanPgC~~ 152 (343)
T PRK00436 80 VSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIK-------GARLIANPGCYP 152 (343)
T ss_pred HHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhc-------CCCEEECCCCHH
Confidence 999999999999999999999999976 4 79999999999998 568999999999
Q ss_pred HHHHHHHhHHHHhCCCc--EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchH
Q 017153 174 IICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251 (376)
Q Consensus 174 ta~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ 251 (376)
|+++++|+||++.++|+ +++|+++||+||||++++++++.+ +..++..+||++||+|. +| +.
T Consensus 153 t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~------------~~~~~~~~y~~~~h~h~-~E---i~ 216 (343)
T PRK00436 153 TASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFS------------EVNENLRPYKVGGHRHT-PE---IE 216 (343)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccch------------hhcCCeeecccCCCCCH-HH---HH
Confidence 99999999999998887 899999999999999999875322 22345669999999998 65 43
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHH----hCCCcEEeeCCCCCCCCcccc
Q 017153 252 EEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILK----NAPGVVVIDDRASNHFPTPLE 327 (376)
Q Consensus 252 ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~----~~~~v~v~~~~~~~~~p~~~~ 327 (376)
+ |++++++ .|+||||||||+|||+.++|+++++++|.+|++++|+ +.|||+|.++. .+|+|++
T Consensus 217 ~------~l~~~~~----~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~v~v~~~~---~~p~~~~ 283 (343)
T PRK00436 217 Q------ELSALAG----EVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYADEPFVRVLPEG---QYPETKS 283 (343)
T ss_pred H------HHHHhcC----CEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCC---CCcchhh
Confidence 3 4466654 6999999999999999999999999999999999999 57999998653 5899999
Q ss_pred ccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 328 VSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 328 v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.|+|+|+|| ++.|. ..+++++|+++|||+||||||||||||+|+
T Consensus 284 v~g~~~~~ig-~~~d~---~~~~~~~~~~~DNL~kGAA~~Avq~~nl~~ 328 (343)
T PRK00436 284 VRGSNFCDIG-FAVDE---RTGRLVVVSAIDNLVKGAAGQAVQNMNIMF 328 (343)
T ss_pred hCCCCeEEEE-EEEcC---CCCEEEEEEEecccchhHHHHHHHHHHHHc
Confidence 9999999999 88763 348999999999999999999999999985
No 16
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00 E-value=6.9e-67 Score=504.85 Aligned_cols=292 Identities=17% Similarity=0.171 Sum_probs=246.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
|++||||+|||||+|++|+|+|.+| |++++..+.++... ++ ..+.+.+.++|+||+|+|+++++++
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~h--p~~~l~~~~s~~~~---------~~---~~~~~~~~~~DvvFlalp~~~s~~~ 66 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGR--SDIELLSIPEAKRK---------DA---AARRELLNAADVAILCLPDDAAREA 66 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcC--CCeEEEEEecCCCC---------cc---cCchhhhcCCCEEEECCCHHHHHHH
Confidence 3689999999999999999999998 99999988765432 11 1123446789999999999999999
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCc---EEEE
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVT---RMVV 194 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~---~v~v 194 (376)
++++.++|++|||+|+|||++++++|++||+|++..+.++ +.++|||||||+|+++++|+||++.+.++ .+++
T Consensus 67 ~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~----~~~~IanPgC~~Ta~~laL~PL~~~~li~~~~~i~i 142 (313)
T PRK11863 67 VALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA----AAKRVANPGCYPTGAIALLRPLVDAGLLPADYPVSI 142 (313)
T ss_pred HHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh----cCCeEEcCCcHHHHHHHHHHHHHHcCCcccCceEEE
Confidence 9999999999999999999999999999999765443221 57899999999999999999999988885 4889
Q ss_pred EEEccccccChHhHHHHHHHhhhhhcCCCCCccccccccccccc-ccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEE
Q 017153 195 STYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLF-SHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTA 273 (376)
Q Consensus 195 ~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~nii-ph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~ 273 (376)
++++|+|||||+++++++ ..+ .++.++.++|++. .|+|. +| ++++ ++.. ..+.|
T Consensus 143 ~a~SG~SGAG~~~~~~~~-----~~~-----~~~~~n~~~Y~~~~~HrH~-pE---i~~~----------l~~~-~~~~F 197 (313)
T PRK11863 143 NAVSGYSGGGKAMIAAYE-----AAP-----DGKAPAFRLYGLGLAHKHL-PE---MQAH----------AGLA-RRPIF 197 (313)
T ss_pred EEccccccCCccchHHHh-----hhh-----hhhccCeeeccCCcCCcch-HH---HHHH----------hccc-cCcEE
Confidence 999999999999998641 002 5688889999999 99999 76 4444 3322 56889
Q ss_pred EEEEecccceeEeeEEEEe---CCCCCHHHHHHHHHh----CCCcEEeeCCC--CCCCCccccccCCCceEEEEEEeccC
Q 017153 274 TCIRVPVMRAHAESVNLQF---EKPLDEDTARDILKN----APGVVVIDDRA--SNHFPTPLEVSNKDDVAVGRIRRDVS 344 (376)
Q Consensus 274 t~~~VPv~rG~~~ti~v~l---~~~~s~~ei~~~~~~----~~~v~v~~~~~--~~~~p~~~~v~g~~~v~vg~~~~~~~ 344 (376)
+||.+|++|||+.|+|+++ +++++.+|++++|++ +|||+|++... ...+|++++|.|+|+|+|+..+ +
T Consensus 198 ~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~~~~~~~~~~~p~~~~v~gtn~~~i~v~~-~-- 274 (313)
T PRK11863 198 TPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVAPLDESAALDFLDPEALNGTNRLELFVFG-N-- 274 (313)
T ss_pred EeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEecCCcccccCCCCHHHhCCCCeEEEEEEE-c--
Confidence 9999999999999999997 888999999999987 49999986531 1126889999999999999887 3
Q ss_pred CCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 345 QDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 345 ~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
++++++.+++++|||+||||||||||||+|+
T Consensus 275 -~~~~~~~v~s~iDNL~KGAAGqAvQn~Nl~~ 305 (313)
T PRK11863 275 -EDHGQAVLVARLDNLGKGASGAAVQNLNLML 305 (313)
T ss_pred -CCCCEEEEEEEcccccccHHHHHHHHHHHHc
Confidence 2457999999999999999999999999985
No 17
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=100.00 E-value=3.5e-62 Score=481.37 Aligned_cols=299 Identities=35% Similarity=0.492 Sum_probs=252.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeeec------------CcceEEeecCccCCCCCcEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ------------DKAYTVEELTEDSFDGVDIAL 106 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~~------------~~~~~v~~~~~~~~~~~DvVf 106 (376)
+||+|+||||++|++|+++|.+| |.++++.+ .++++.|+.+... ..++.+.+.+++.+.++|+||
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEE
Confidence 58999999999999999999988 88999887 4555677765421 123445555555668899999
Q ss_pred EcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccC---CCCCcEEEcCCchHHHHHHHHhHH
Q 017153 107 FSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG---MGKGALIANPNCSTIICLMAATPL 183 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~---~~~~~iVa~PgC~~ta~~l~L~pL 183 (376)
+|+|++++.++++++.++|++|||+|++||+++++++.+||+|.+.+...+.+ .+++++|||||||+|+++++|+||
T Consensus 79 ~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~~t~~~lal~pL 158 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTTAGLTLALKPL 158 (341)
T ss_pred EeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998866532211 225679999999999999999999
Q ss_pred HHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHH
Q 017153 184 HRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263 (376)
Q Consensus 184 ~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~i 263 (376)
+++++|++++++++||+||+|+.+.+. ..+++|++|+.+. +|.+...|+.++
T Consensus 159 ~~~~~i~~v~v~t~~gvSgaG~~~~~~--------------------~~~~~Ni~py~~~--------~ehrh~~Ei~~i 210 (341)
T TIGR00978 159 IDAFGIKKVHVTTMQAVSGAGYPGVPS--------------------MDILDNIIPHIGG--------EEEKIERETRKI 210 (341)
T ss_pred HHhCCCcEEEEEEEEccCCCCCCCCcc--------------------chhhCCeEecCcH--------HHHHHHHHHHHH
Confidence 999999999999999999999986531 2357899998765 567888899999
Q ss_pred hCCC--------CCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC--------------CCcEEeeCCCCCC
Q 017153 264 WNDK--------DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA--------------PGVVVIDDRASNH 321 (376)
Q Consensus 264 l~~~--------~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~--------------~~v~v~~~~~~~~ 321 (376)
|+.. .+.|+|+|||||++|||++++|++++++++.++++++|+++ |||++.++ +.
T Consensus 211 l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~~~~---~~ 287 (341)
T TIGR00978 211 LGKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIVRDE---ED 287 (341)
T ss_pred hCccccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEECCC---CC
Confidence 9753 56799999999999999999999999999999999999863 55788744 35
Q ss_pred CCcccccc--CCCc-eEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 322 FPTPLEVS--NKDD-VAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 322 ~p~~~~v~--g~~~-v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+|+|+++. |+|+ |+||+++.+ ++++++|+++|||+||||||||||||+|+
T Consensus 288 ~p~~~~~~~~g~~~~~~ig~~~~~-----~~~l~~~~~~DNl~kGaA~~avq~~n~~~ 340 (341)
T TIGR00978 288 RPQPRLDRDAGGGMAVTVGRLREE-----GGSLKYVVLGHNLVRGAAGATLLNAELAY 340 (341)
T ss_pred CCCcceeeecCCCceEEEEeEECC-----CCeEEEEEEEchHHHHHHHHHHHHHHHHh
Confidence 89999777 9988 999987743 37999999999999999999999999985
No 18
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-60 Score=471.95 Aligned_cols=300 Identities=35% Similarity=0.513 Sum_probs=249.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeeec------------CcceEEeecCccCCCCCcE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ------------DKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~~------------~~~~~v~~~~~~~~~~~Dv 104 (376)
+++||+|+||||++|++|+++|.+| |.++++.+ .++++.|+.+... ..++.+...+++.+.++|+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Dv 79 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDVDI 79 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCCCE
Confidence 3599999999999999999999987 99999998 7777888766421 1234555556666778999
Q ss_pred EEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccC----CCCCcEEEcCCchHHHHHHHH
Q 017153 105 ALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG----MGKGALIANPNCSTIICLMAA 180 (376)
Q Consensus 105 Vf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~----~~~~~iVa~PgC~~ta~~l~L 180 (376)
||+|+|++++.++++++.++|++|||+|++||+++++++.+||+|++.+...+.. +.+.++|||||||+|+++++|
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~~iVa~p~C~~t~~~l~l 159 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLVLAL 159 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCceEEEccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999888999999998765321111 024579999999999999999
Q ss_pred hHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHH
Q 017153 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKET 260 (376)
Q Consensus 181 ~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~ 260 (376)
+||++ +++++++++++||+||+|+++.+.+ .+++|++|+..+ +|.+...|+
T Consensus 160 ~pL~~-~gl~~i~v~~~~g~SgaG~~~~~~~--------------------~~~~N~~p~~~~--------~ehrh~~Ei 210 (349)
T PRK08664 160 KPLMD-FGIERVHVTTMQAISGAGYPGVPSM--------------------DIVDNVIPYIGG--------EEEKIEKET 210 (349)
T ss_pred HHHHH-CCCcEEEEEEEeccccCCcccchhh--------------------hhhcCcccccCc--------hhhhhhHHH
Confidence 99999 8999999999999999999877521 146788887654 445666667
Q ss_pred HHHhCC--------CCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC--------------CCcEEeeCCC
Q 017153 261 RKIWND--------KDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA--------------PGVVVIDDRA 318 (376)
Q Consensus 261 ~~il~~--------~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~--------------~~v~v~~~~~ 318 (376)
.++++. ++++|+|+|||||++|||+.++|++++++++.+|++++|+++ |||+++++
T Consensus 211 ~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fv~~~~~-- 288 (349)
T PRK08664 211 LKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKGLPQELGLPSAPKKPIILFEE-- 288 (349)
T ss_pred HHHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccCccccccCCCCCCceEEEeCC--
Confidence 777754 367899999999999999999999999999999999999964 56888854
Q ss_pred CCCCCccccccCCCc---eEEEEEEeccCCCCCC-eEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 319 SNHFPTPLEVSNKDD---VAVGRIRRDVSQDGNH-GLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 319 ~~~~p~~~~v~g~~~---v~vg~~~~~~~~~~~~-~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.+|+|+++.|+|+ +++||+|.+ .+ ++++|+++|||+||||||||||||+|+
T Consensus 289 -~~~p~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~DNl~kGaA~~avq~~n~~~ 344 (349)
T PRK08664 289 -PDRPQPRLDRDAGDGMAVSVGRLRED-----GIFDIKFVVLGHNTVRGAAGASVLNAELLK 344 (349)
T ss_pred -CCCCceeEEcccCCceeEEECCeeec-----CCCCEEEEEEEhHHHHHHHHHHHHHHHHHH
Confidence 25899999888887 666676653 25 899999999999999999999999874
No 19
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-52 Score=378.00 Aligned_cols=293 Identities=22% Similarity=0.293 Sum_probs=243.3
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec-CcceEEeecCcc------CCCCCcEEEEcC
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-DKAYTVEELTED------SFDGVDIALFSA 109 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~-~~~~~v~~~~~~------~~~~~DvVf~a~ 109 (376)
.+.+||+++||+||+|.+|++++.+| |++++..+.|++.+|+.+... ...+...++... +-..+|.+.+++
T Consensus 17 ~k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wvmaL 94 (340)
T KOG4354|consen 17 EKDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWVMAL 94 (340)
T ss_pred CCCceEEEEeccccchhhHHHHhcCC--CceEEEeeehhhhcCCcccCcchhheeecccchhhHHHhhcCCceeeeeeec
Confidence 45799999999999999999999988 999999999999999877631 112222222211 113678899999
Q ss_pred CCchhhhhHHHHHhC--CCeEEEcCCCCCCCC--CCcEEeeccC-HHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHH
Q 017153 110 GGSISKKFGPIAVEK--GSIVVDNSSAFRMVE--NVPLVIPEVN-PEAMSGIKVGMGKGALIANPNCSTIICLMAATPLH 184 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~--G~~VIDlS~~~R~~~--~~~~~lpevN-~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~ 184 (376)
|..+.+.++...... ..++||+|+++|+.+ +|.|+|||+| |+.|+ ++++|||||||+|+..+.|.||.
T Consensus 95 Pn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-------na~~iaNPGCYaTgsQl~l~Pll 167 (340)
T KOG4354|consen 95 PNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-------NARLIANPGCYATGSQLPLVPLL 167 (340)
T ss_pred chhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-------hhhhccCCCcccccCcccchHHH
Confidence 999999888876543 356999999999987 8999999999 89998 78999999999999999999999
Q ss_pred HhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHh
Q 017153 185 RRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264 (376)
Q Consensus 185 ~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il 264 (376)
+...+.. .|+.++|+||||+++.+.. +. .+..++.++|.+-.|+|+ +| |.+
T Consensus 168 k~i~g~p-~ifgvSGySGAGtkpspkN------d~------~~l~nnlipY~ltdHiHe-rE---Is~------------ 218 (340)
T KOG4354|consen 168 KAILGKP-EIFGVSGYSGAGTKPSPKN------DY------SELANNLIPYGLTDHIHE-RE---ISQ------------ 218 (340)
T ss_pred HHhcCCc-ceeeeccccCCCCCCCCcc------CH------HHHhcCCccccccccchh-Hh---HHH------------
Confidence 9866543 4899999999999887631 11 345567788999999998 55 222
Q ss_pred CCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCCCccccccCCCceEEEEEE
Q 017153 265 NDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHFPTPLEVSNKDDVAVGRIR 340 (376)
Q Consensus 265 ~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~ 340 (376)
..+..|+|+||..|+|+|+..||+|++++.++.+|++++|++ +++|+|+++ +|.++++.|+++|++|.+.
T Consensus 219 -r~k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~dd-----vPlvkdv~gsh~v~~ggF~ 292 (340)
T KOG4354|consen 219 -RSKVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLDD-----VPLVKDVRGSHYVHMGGFP 292 (340)
T ss_pred -hhCCceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeeecc-----ccceeccCCcceeEecccc
Confidence 135689999999999999999999999999999999999986 588999864 6999999999999999987
Q ss_pred eccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 341 RDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 341 ~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.+ .++|.+++++||||+||||+||+||+|+|+
T Consensus 293 -~~~--~g~Ravii~tIDNLlKGAatQaLQNlNl~~ 325 (340)
T KOG4354|consen 293 -DRI--PGDRAVIISTIDNLLKGAATQALQNLNLML 325 (340)
T ss_pred -CCC--CCceEEEEEehhhhhhhHHHHHHHhhhhhh
Confidence 433 346999999999999999999999999985
No 20
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-47 Score=351.23 Aligned_cols=318 Identities=53% Similarity=0.754 Sum_probs=259.0
Q ss_pred CEEE-EECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeeecC------------cceEEeecCccCCCCCcEE
Q 017153 40 PSVA-VVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQD------------KAYTVEELTEDSFDGVDIA 105 (376)
Q Consensus 40 irVa-IvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~~~------------~~~~v~~~~~~~~~~~DvV 105 (376)
.|+| |+|+||.+|++++.+|.+| |++++..+ +|.+++||++.+.+ .++.+++.+++.|.+||+|
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdh--P~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDIv 81 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDH--PYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDIV 81 (361)
T ss_pred ccccceeeccchhHHHHHHHhccC--CcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhcccccEE
Confidence 4555 9999999999999999998 99999888 78999999998743 2455667778889999999
Q ss_pred EEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccC-----CCCCcEEEcCCchHHHHHHHH
Q 017153 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG-----MGKGALIANPNCSTIICLMAA 180 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~-----~~~~~iVa~PgC~~ta~~l~L 180 (376)
|+.++.+.+.++.+.+.++|..|||++..||+++++|+++|++|+|.++.++.+ ..+..||+||||.|.+++++|
T Consensus 82 fsgldad~ageiek~f~eag~iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~v~pl 161 (361)
T KOG4777|consen 82 FSGLDADIAGEIEKLFAEAGTIIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAICVMPL 161 (361)
T ss_pred EecCCchhhhhhhHHHHhcCeEEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeeeEEeec
Confidence 999999999999999999999999999999999999999999999999876544 235779999999999999999
Q ss_pred hHHHHhCC-CcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHH
Q 017153 181 TPLHRRAK-VTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKE 259 (376)
Q Consensus 181 ~pL~~~~~-i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e 259 (376)
+||+.+|| |++..++|||++||||.++..++.+++.+.+-+.+.+++.++...++++.+|...+..+|+.+||++.
T Consensus 162 kpL~~~fgpi~~~~v~t~QAiSGAG~apgv~~vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vs--- 238 (361)
T KOG4777|consen 162 KPLHHHFGPIKRMVVSTYQAISGAGAAPGVELVDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVS--- 238 (361)
T ss_pred hhHHhhccchhhhhhhhhhhhccCCcCCCchHHHHHHhhcCCCCccchhhhHHHHHhhhccCCccccccccHHHhhh---
Confidence 99999995 78999999999999999888888778777776666667777777788888887777777777666544
Q ss_pred HHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCC--CCHHHHHHHHHh--------------CCCcEEeeCCCCCCCC
Q 017153 260 TRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKP--LDEDTARDILKN--------------APGVVVIDDRASNHFP 323 (376)
Q Consensus 260 ~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~--~s~~ei~~~~~~--------------~~~v~v~~~~~~~~~p 323 (376)
..|-||||..||...+.+.|..+ .+.+++.+++.+ .+.|.|+++.. ...|
T Consensus 239 -------------aqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~d~~klgc~sapkq~iyv~dd~a-pdrP 304 (361)
T KOG4777|consen 239 -------------AQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVLDENKLGCISAPKQGIYVIDDRA-PDRP 304 (361)
T ss_pred -------------hhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhccCChhhcccccCCCCeEEEecCCC-CCCC
Confidence 45556666666666665555422 245555555543 37899998753 4679
Q ss_pred ccccccCCCc---eEEEEEEeccCCCCCC-eEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 324 TPLEVSNKDD---VAVGRIRRDVSQDGNH-GLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 324 ~~~~v~g~~~---v~vg~~~~~~~~~~~~-~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+|+...+.+. |.|||+|.|...+..- .+...+++|..+||++.++||+++.|+
T Consensus 305 qPrldrN~d~gy~VsVGRIR~D~~~D~kfv~L~hnt~~gaag~G~l~aev~ia~~Ll 361 (361)
T KOG4777|consen 305 QPRLDRNKDDGYGVSVGRIRRDVSQDGKFVVLDHNTCGGAAGKGALLAEVQIAEMLL 361 (361)
T ss_pred CcccccccCCCceeeeeeeecccccccceEEEEeeeehhhhcchhHHHHHHHHhhcC
Confidence 9998888777 9999999887644221 256678999999999999999999875
No 21
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=8.3e-42 Score=332.92 Aligned_cols=299 Identities=18% Similarity=0.231 Sum_probs=227.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEec---------------C--------CCCCceeeecCcceEEe--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLAS---------------K--------RSAGKQLSFQDKAYTVE-- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s---------------~--------~~~g~~~~~~~~~~~v~-- 92 (376)
++||||+|+ |++|+.++|+|.++++| .++++++.+ . ++.|+.+.++++.+.+.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 379999999 99999999999887544 688887653 1 23445555566777776
Q ss_pred -ecCccCC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 93 -ELTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 93 -~~~~~~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
+++...| .++|+||+|+|.+.++++++.++++|+++||+|+++|++++. +++||+|++.++. ...|||||
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~-~vV~gVN~~~~~~------~~~IISna 152 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDA-TVVYGVNHDQLRA------EHRIVSNA 152 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCC-eEEeCcCHHHhCc------CCCEEECC
Confidence 3334457 599999999999999999999999999999999999877654 8999999999974 46799999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
+|+|+|++++|+||+++|+|+++.++|+|++| +|++++|+++++ .+.+|..++|+||+.+
T Consensus 153 sCTTn~Lap~lk~L~~~fgI~~~~mTT~ha~t-~~Q~~vD~~~~d------------~rr~r~~a~NiIP~~t------- 212 (336)
T PRK13535 153 SCTTNCIIPVIKLLDDAFGIESGTVTTIHSAM-NDQQVIDAYHPD------------LRRTRAASQSIIPVDT------- 212 (336)
T ss_pred chHHHHHHHHHHHHHHhcCeeEEEEEEEEhhc-CCcchhhchhhc------------cccccEeeeccccCcc-------
Confidence 99999999999999999999999999999999 789999976422 2446679999999833
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCC---cEEeeCCCCCCCCcc-
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG---VVVIDDRASNHFPTP- 325 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~---v~v~~~~~~~~~p~~- 325 (376)
++..|++|+||.++++++.+|+||||++||+.+++++++++++.||++++|++++- --++...++ |-.
T Consensus 213 -----gaa~a~~kilP~l~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~---~~VS 284 (336)
T PRK13535 213 -----KLAAGITRIFPQFNDRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTEL---PLVS 284 (336)
T ss_pred -----HHHhhhhhcccCCCCcEEEEEEEeCccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCC---Cccc
Confidence 45677899999888899999999999999999999999999999999999997531 122322111 111
Q ss_pred ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 326 LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 326 ~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
.+..|..+-.|--...-.. -+++-+.+++--|| -+|=|-+-+-.++.|
T Consensus 285 ~D~~~~~~s~i~d~~~t~~-~~~~~~k~~~WyDN-E~gys~r~~d~~~~~ 332 (336)
T PRK13535 285 IDFNHDPHSAIVDGTQTRV-SGAHLIKTLVWCDN-EWGFANRMLDTTLAM 332 (336)
T ss_pred cccCCCCcceEEEcccCEE-ECCCEEEEEEEEcC-chHHHHHHHHHHHHH
Confidence 1233333211100000000 12255778888899 677776666655543
No 22
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.5e-40 Score=324.07 Aligned_cols=294 Identities=13% Similarity=0.203 Sum_probs=224.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC------------------------CCCceeeecCcceEEe--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------------------------SAGKQLSFQDKAYTVE-- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~------------------------~~g~~~~~~~~~~~v~-- 92 (376)
++||||+|+ |.+|+.++|.+.++ ++++++++.... +.|+.+.++++.+.+.
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~ 78 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQN 78 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEec
Confidence 489999999 99999999998877 789999887521 1223333455667776
Q ss_pred -ecCccCCCCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCc
Q 017153 93 -ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 93 -~~~~~~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC 171 (376)
+++...|.++|+||+|+|.+.++++++.++++|+++||+|++ |.++++|+++||+|++.++.. ..+|||||+|
T Consensus 79 ~~~~~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap-~~d~d~p~vV~gVN~~~~~~~-----~~~IISnasC 152 (334)
T PRK08955 79 KAIADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP-VKEEGVLNIVMGVNDHLFDPA-----IHPIVTAASC 152 (334)
T ss_pred CChhhCCccCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC-CCCCCCceEecccCHHHhccc-----CCCEEECCcc
Confidence 444456889999999999999999999999999999999999 888788999999999999731 2579999999
Q ss_pred hHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchH
Q 017153 172 STIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251 (376)
Q Consensus 172 ~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ 251 (376)
+|+|++++|+||+++|+|+++.+||+|++|... . ++.+.+. +.+++++.++|+||+.++. +
T Consensus 153 tTn~Lap~lk~L~~~fgI~~~~mTTvha~t~~q-~-----------lld~~~~-d~r~~r~~a~NiIP~~tGa-----a- 213 (334)
T PRK08955 153 TTNCLAPVVKVIHEKLGIKHGSMTTIHDLTNTQ-T-----------ILDAPHK-DLRRARACGMSLIPTTTGS-----A- 213 (334)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEEeccCcc-c-----------cccCCCc-ccccchhheeccccccCCC-----c-
Confidence 999999999999999999999999999999542 2 2333322 3488999999999998663 2
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCC---cEEeeCCCCCCCCcc-cc
Q 017153 252 EEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG---VVVIDDRASNHFPTP-LE 327 (376)
Q Consensus 252 ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~---v~v~~~~~~~~~p~~-~~ 327 (376)
.|++++||.++.+++.+++|||+++||+.+++++++++++.+|++++|++++. -.++...++ |-. .+
T Consensus 214 ------~a~~kvlP~L~gkl~~~avRVPv~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~---~~vS~D 284 (334)
T PRK08955 214 ------TAITEIFPELKGKLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEER---PLVSID 284 (334)
T ss_pred ------cccceEccccCCcEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccC---Ccccce
Confidence 35688999888889999999999999999999999999999999999998643 223322111 111 12
Q ss_pred ccCCCceEE---EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 328 VSNKDDVAV---GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 328 v~g~~~v~v---g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
..|+.+-.| ..-+. -+++-+.+++--|| -+|=|-+-+-.+..
T Consensus 285 ~~~~~~s~i~d~~~t~~----~~~~~~k~~~WyDN-E~gys~r~~dl~~~ 329 (334)
T PRK08955 285 YKTDPRSSIVDALSTMV----VNGTQVKLYAWYDN-EWGYANRTAELARK 329 (334)
T ss_pred eCCCCchHheehhcCEE----ecCCEEEEEEEeCC-chhHHHHHHHHHHH
Confidence 223222111 11110 12356888888999 66766666655544
No 23
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.1e-39 Score=316.77 Aligned_cols=296 Identities=14% Similarity=0.197 Sum_probs=224.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CCc----------eeeecCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AGK----------QLSFQDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g~----------~~~~~~~~~~v~--- 92 (376)
++||||+|+ |++||.++|.+.++ ++++++++.+... -|+ .+.++++.+.+.
T Consensus 2 ~~~i~inGf-GRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGF-GRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEee-ChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcC
Confidence 479999999 99999999998776 8899999975321 111 122234556665
Q ss_pred ecCccCCC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 93 ELTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 93 ~~~~~~~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+++...|. ++|+||+|+|.+.++++++.++++|+++||+|++ +++++|+++||+|++.+. ..++||||+
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap--~~~~vp~vV~gVN~~~~~-------~~~IISnaS 149 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP--SKDNTPMFVKGANFDKYA-------GQDIVSNAS 149 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC--CCCCCCEEEcccCHHHcC-------CCCEEECCC
Confidence 33344576 9999999999999999999999999999999999 566789999999999986 457999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+|+|++++|+||+++|+|+++.+||+|++|+. +...+ +.+.++.+++|+.++|+||+.++. .
T Consensus 150 CtTn~Lapvlk~L~~~fgI~~g~mTTvha~T~~-q~llD-----------~~~~~d~r~~R~aa~NiIPt~tGa-----a 212 (331)
T PRK15425 150 CTTNCLAPLAKVINDNFGIIEGLMTTVHATTAT-QKTVD-----------GPSHKDWRGGRGASQNIIPSSTGA-----A 212 (331)
T ss_pred cHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCc-ccccc-----------CCCCcccccCcchhhceecccCCc-----h
Confidence 999999999999999999999999999999999 64333 222346789999999999998763 2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEEeeCCCCCCCCcc-c
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVVIDDRASNHFPTP-L 326 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~~-~ 326 (376)
.|+++++|.++++++.+++|||+++||+.+++++++++++.||++++|+++. .-.++...++ |-. .
T Consensus 213 -------~av~kIlP~L~gkl~g~avRVPv~~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~---~~VS~ 282 (331)
T PRK15425 213 -------KAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTED---DVVST 282 (331)
T ss_pred -------HHHHhhccccCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCC---cEeee
Confidence 4578899988888999999999999999999999999999999999999742 2223322110 221 1
Q ss_pred cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 327 EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 327 ~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
+..|..+-.|=-...-.. -+++-+.+++--|| -+|=+-+-+-.++.|
T Consensus 283 D~~~~~~ssi~d~~~t~v-~~~~~~k~~~WyDN-E~gys~r~~d~~~~~ 329 (331)
T PRK15425 283 DFNGEVCTSVFDAKAGIA-LNDNFVKLVSWYDN-ETGYSNKVLDLIAHI 329 (331)
T ss_pred ecCCCCcceEEEcccCEE-ecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 333433322210000000 12256888888999 677777666665543
No 24
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=2e-39 Score=320.36 Aligned_cols=299 Identities=14% Similarity=0.192 Sum_probs=226.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec---------------C---------CCCCceeeecCcceEEee
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---------------K---------RSAGKQLSFQDKAYTVEE 93 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s---------------~---------~~~g~~~~~~~~~~~v~~ 93 (376)
|++||||+|+ |++|+.++|+|.++++|.++++++.+ . .+.|+.+.++++.+.+..
T Consensus 59 ~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 59 AKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred cccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEE
Confidence 4589999999 99999999999887778999997653 1 113444555666777753
Q ss_pred ---cCccCC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEc
Q 017153 94 ---LTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (376)
Q Consensus 94 ---~~~~~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~ 168 (376)
++...| .++|+||+|+|.+.++++++.++++|+++||+|++ .++++|+++||+|++.++. ..+||||
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap--~~~~~ptvV~GVN~~~l~~------~~~IISn 209 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP--GKGDIPTYVVGVNADDYKH------SDPIISN 209 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC--CCCCCCeEeCccCHHHhcc------CCCEEEC
Confidence 333457 58999999999999999999999999999999998 4667899999999999973 4679999
Q ss_pred CCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 169 PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
|+|+|+|++++++||+++|+|+++.+||+|++|+. +..+| +.+ .+.+++|+.++|+||+.++.
T Consensus 210 aSCTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~-Q~llD-----------~~~-~d~rr~Raaa~NiIPtsTGa---- 272 (395)
T PLN03096 210 ASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLD-----------ASH-RDLRRARAAALNIVPTSTGA---- 272 (395)
T ss_pred CchHHHHHHHHHHHHHHhcCeeEEEEEEEEccccc-ccccc-----------CCC-CccccchhhhccccccCCCc----
Confidence 99999999999999999999999999999999998 33333 221 24468999999999998773
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCCCCcc
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNHFPTP 325 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~~p~~ 325 (376)
. .|+.++||.++++++++++|||+++||+.+++++++++++.||++++|+++ +.--++...++ |-.
T Consensus 273 -a-------kav~kVlP~L~gkl~g~avRVPv~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~---p~V 341 (395)
T PLN03096 273 -A-------KAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDE---PLV 341 (395)
T ss_pred -c-------hhhhhcccccCCcEEEEEEEccccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCC---CEe
Confidence 2 256889999888999999999999999999999999999999999999984 22122221110 211
Q ss_pred -ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 326 -LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 326 -~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
.+..|...-.|=-...-.. -+++-+.+++--|| -+|=+-+-+-.+..|
T Consensus 342 S~Df~~~~~Ssi~d~~~t~v-~~~~~vKv~~WYDN-E~Gys~r~~dl~~~~ 390 (395)
T PLN03096 342 SVDFRCSDVSSTIDSSLTMV-MGDDMVKVVAWYDN-EWGYSQRVVDLADIV 390 (395)
T ss_pred eeeecCCCCceEEEcccCEE-eCCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 1333333333310000000 12255778888999 677776666655543
No 25
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=4.1e-38 Score=307.46 Aligned_cols=297 Identities=15% Similarity=0.209 Sum_probs=222.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--------------CCc------------eeeecCcceEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------------AGK------------QLSFQDKAYTV 91 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--------------~g~------------~~~~~~~~~~v 91 (376)
+++||||+|+ |++|+..+|.+.++ |+++++++.++.. .|+ .+.++++.+.+
T Consensus 4 ~~lrVaI~G~-GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v 80 (338)
T PLN02358 4 KKIRIGINGF-GRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 80 (338)
T ss_pred CceEEEEEee-cHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEE
Confidence 3589999999 99999999998876 8999999876321 111 12223455666
Q ss_pred eecC-cc--CC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEE
Q 017153 92 EELT-ED--SF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALI 166 (376)
Q Consensus 92 ~~~~-~~--~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iV 166 (376)
...+ ++ .| .++|+||+|+|.+.++++++.++++|+++||+|+. .+++|+++||+|++.++. ..++|
T Consensus 81 ~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap---~~dvp~iV~gVN~~~~~~------~~~II 151 (338)
T PLN02358 81 FGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAP---SKDAPMFVVGVNEHEYKS------DLDIV 151 (338)
T ss_pred EEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCC---CCCCCeEecCcCHHHhCC------CCCEE
Confidence 5433 33 46 58999999999999999999999999999999966 356799999999999974 46799
Q ss_pred EcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcC
Q 017153 167 ANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLE 246 (376)
Q Consensus 167 a~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e 246 (376)
|||+|+|+|++++|+||+++|||+++.+||+|++||+++ ..+ +.+.++.+++|++++|+||+.++.
T Consensus 152 SnasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~-l~d-----------~~~~~d~r~~ra~a~NiIP~~tGa-- 217 (338)
T PLN02358 152 SNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQK-TVD-----------GPSMKDWRGGRAASFNIIPSSTGA-- 217 (338)
T ss_pred ECCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCccc-ccC-----------CCCCccccCccccccccccCCcch--
Confidence 999999999999999999999999999999999999964 333 221236688999999999998762
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCC---cEEeeCCCCCCCC
Q 017153 247 NGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG---VVVIDDRASNHFP 323 (376)
Q Consensus 247 ~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~---v~v~~~~~~~~~p 323 (376)
..|++++||.++++++.+++|||+++||+.+++++++++++.||++++|+++.- -.++...+ -|
T Consensus 218 ----------aka~~kIlP~l~gkl~g~avRVPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~---~~ 284 (338)
T PLN02358 218 ----------AKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTE---DD 284 (338)
T ss_pred ----------hhhhhhccccCCCcEEEEEEEeeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccC---Cc
Confidence 235789999988999999999999999999999999999999999999998531 11222111 02
Q ss_pred cc-ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 324 TP-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 324 ~~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
-. .+..|...-.|--...-.. -+++-+.+++--|| -+|=|-+-+-.+..|
T Consensus 285 ~VS~D~~~~~~s~i~d~~~t~~-~~~~~vk~~~WyDN-E~gys~r~~dl~~~~ 335 (338)
T PLN02358 285 VVSTDFVGDNRSSIFDAKAGIA-LSDKFVKLVSWYDN-EWGYSSRVVDLIVHM 335 (338)
T ss_pred eeeeecCCCCcceEEEcccCeE-ecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 11 1233332211100000000 01256888888999 677776666665543
No 26
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.6e-38 Score=309.50 Aligned_cols=234 Identities=16% Similarity=0.218 Sum_probs=194.9
Q ss_pred EEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCC-----------------------CCCceeeecCcceEEe---e
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKR-----------------------SAGKQLSFQDKAYTVE---E 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~-----------------------~~g~~~~~~~~~~~v~---~ 93 (376)
||||+|+ |.+|+.++|.|.+++ .+.++++++.... ..|+.+.++++.+.+. +
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 6999999 999999999988762 1468998886421 2233444455666665 3
Q ss_pred cCccCC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCc
Q 017153 94 LTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 94 ~~~~~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC 171 (376)
.+...| .++|+||+|+|...++++++.++++|+++||+|+++|++++. +++||+|++.++. ..+|||||+|
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~-~vV~gVN~~~~~~------~~~IISnasC 152 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDA-TIVYGVNQQDLSA------EHTIVSNASC 152 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCc-eEEeccCHHHhCC------CCCEEeCCCc
Confidence 333357 589999999999999999999999999999999999986554 8999999999974 4679999999
Q ss_pred hHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccc-cccccCCCCcCCCch
Q 017153 172 STIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAF-NLFSHNAPVLENGYN 250 (376)
Q Consensus 172 ~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~-niiph~~~~~e~g~~ 250 (376)
+|+|++++|+||+++|+|+++.+||+|++|+ |+.++|+++.++ +. .+.++ |+||+.++
T Consensus 153 tTn~lap~lk~L~~~fgI~~~~~tTvha~t~-~q~~vD~~~~d~------------r~-~r~a~~NiIP~~t~------- 211 (325)
T TIGR01532 153 TTNCIVPLIKLLDDAIGIESGTITTIHSAMN-DQQVIDAYHHDL------------RR-TRAASQSIIPVDTK------- 211 (325)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEEhhcC-Cccccccchhhc------------cc-cchHhhCeeeCCcc-------
Confidence 9999999999999999999999999999999 899999764322 22 33455 99998433
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA 308 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~ 308 (376)
+..|++|+||.++++++.+++||||++||+.+++++++++++.||++++|+++
T Consensus 212 -----~a~a~~kilP~L~gkl~~~avRVPv~~~s~~dl~v~~~~~~~~eev~~~l~~a 264 (325)
T TIGR01532 212 -----LARGIERLFPEFAGRFEAIAVRVPTVNVTALDLSVTTKRDVKANEVNRVLREA 264 (325)
T ss_pred -----HHHHHHHhCcccCCeEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHh
Confidence 45568999998888999999999999999999999999999999999999974
No 27
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.2e-38 Score=305.78 Aligned_cols=297 Identities=14% Similarity=0.196 Sum_probs=217.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-C-------------CCc---eee-------ecCcceEEe-e
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S-------------AGK---QLS-------FQDKAYTVE-E 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~-------------~g~---~~~-------~~~~~~~v~-~ 93 (376)
++||||+|+ |++|+.++|.+.++ ++++++++.+.. . -|+ .+. .+++.+.+. +
T Consensus 2 ~~ki~INGf-GRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~ 78 (337)
T PTZ00023 2 VVKLGINGF-GRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFE 78 (337)
T ss_pred ceEEEEECc-ChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeC
Confidence 479999999 99999999998876 889999997521 1 111 111 123445553 3
Q ss_pred cCccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 94 LTEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 94 ~~~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
-+|.+ | .++|+||+|+|.+.++++++.++++|+++||+|+ ++++++|+++||+|++.++. ..+|||||
T Consensus 79 ~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSa--p~~~~vp~vV~gVN~~~~~~------~~~IISna 150 (337)
T PTZ00023 79 KDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSA--PPKDDTPIYVMGVNHTQYDK------SQRIVSNA 150 (337)
T ss_pred CChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCC--CCCCCCCeEEcccCHHHhCC------CCCEEECC
Confidence 34444 5 3899999999999999999999999999999999 46777899999999999974 46799999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCC--CcccccccccccccccCCCCcCC
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPP--TCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~--~~~~~~~~~a~niiph~~~~~e~ 247 (376)
+|+|+|++++|+||+++|+|+++.++|+|++|.... . +.|.+. ...+++|+.++|+||+.++.
T Consensus 151 sCTTn~Lap~lk~L~~~fgI~~~~~TT~ha~T~~Q~-l-----------ld~~~~~~kd~r~~r~~a~NiIP~~tGa--- 215 (337)
T PTZ00023 151 SCTTNCLAPLAKVVNDKFGIVEGLMTTVHASTANQL-T-----------VDGPSKGGKDWRAGRCAGVNIIPASTGA--- 215 (337)
T ss_pred ccHHHHHHHHHHHHHHhcCeeEEEEEEEEecCCCce-e-----------cCCcCcccCCCcccceeeccccccCCCc---
Confidence 999999999999999999999999999999995422 2 223221 23478899999999998763
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEEeeCCCCCCCCc
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVVIDDRASNHFPT 324 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~ 324 (376)
++ |+.+++|..+++++.+++|||+++||+.+++++++++++.||++++|+++. .-.++...++ |-
T Consensus 216 --ak-------av~kVlPeL~gkl~g~avRVPt~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~---~~ 283 (337)
T PTZ00023 216 --AK-------AVGKVIPELNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDD---EV 283 (337)
T ss_pred --ch-------hhhheecccCCcEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCC---Ce
Confidence 32 457788988888999999999999999999999999999999999999742 2222221110 11
Q ss_pred c-ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 325 P-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 325 ~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
. .+..|...-.|--...-.. -+++-+.+++--|| -+|=|-+-+-.+..|
T Consensus 284 VS~D~~~~~~s~i~d~~~t~v-~~~~~~k~~~WyDN-E~gys~r~~d~~~~~ 333 (337)
T PTZ00023 284 VSSDFVHDKRSSIFDVKAGIA-LNDTFVKLVSWYDN-EWGYSNRLLDLAHYI 333 (337)
T ss_pred eeeecCCCCCCeEEEcccCeE-ecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 1 1233333211100000000 11256888888999 677776666655543
No 28
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=6.7e-38 Score=304.74 Aligned_cols=235 Identities=19% Similarity=0.236 Sum_probs=193.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CC----------c-eeeecCc-ceEEe---
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG----------K-QLSFQDK-AYTVE--- 92 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g----------~-~~~~~~~-~~~v~--- 92 (376)
||||+|+ |++|+.++|.+.++..+.++++++.+... .| . .+.++++ .+.+.
T Consensus 1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 6999999 99999999998765213699998875311 11 1 1333444 55554
Q ss_pred ecCccCCC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 93 ELTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 93 ~~~~~~~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+++...|. ++|+||+|+|.+.++++++.++++|+++||+|++ |+++ +|+++||+|++.++. ..+|||||+
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap-~~d~-~plvV~gVN~~~~~~------~~~IISn~s 151 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP-SKGD-APTIVYGVNHDEYDP------EERIISNAS 151 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC-CCCC-CCeecCCCCHHHhCC------CCCEEecCC
Confidence 33344576 8999999999999999999999999999999998 7765 899999999999973 467999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+|+|++++|+||++.|+|+++.+||+|++||.++ .++ +.+ .+.+++++.++|+||+.++. .
T Consensus 152 CtTn~Lap~lk~L~~~fgI~~~~~TTiha~t~~q~-lld-----------~~~-~d~r~~r~~a~NiIP~~tg~-----a 213 (327)
T TIGR01534 152 CTTNCLAPLAKVLDEAFGIVSGLMTTVHSYTNDQN-LVD-----------GPH-KDLRRARAAALNIIPTSTGA-----A 213 (327)
T ss_pred chHHHHHHHHHHHHHhcCeeEEEEEEEEeecCccc-ccc-----------CCC-CCCcCceEeEeeeeccCCCh-----H
Confidence 99999999999999999999999999999999743 222 221 23478899999999998662 2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP 309 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~ 309 (376)
.++.+++|..+.+++.+|+||||++||+.+++++++++++.+|++++|++++
T Consensus 214 -------k~~~kvlP~L~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eev~~al~~a~ 265 (327)
T TIGR01534 214 -------KAIGKVLPELAGKLTGMAIRVPTPNVSLVDLVLNLEKDTTKEEVNAALKEAA 265 (327)
T ss_pred -------HHHhhccccCCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHhhh
Confidence 3468889888888999999999999999999999999999999999999753
No 29
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.9e-37 Score=299.34 Aligned_cols=300 Identities=16% Similarity=0.213 Sum_probs=223.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CCc----------eeeecCcceEEee-c
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AGK----------QLSFQDKAYTVEE-L 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g~----------~~~~~~~~~~v~~-~ 94 (376)
++||||+|+ |++|+.++|.+.++..+.++++++.+... .|+ .+..+++.+.+.. .
T Consensus 1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 379999999 99999999987765224799999875321 111 1222345566653 5
Q ss_pred CccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 95 ~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+|++ |. ++|+||+|+|.+.++++++.++++|+++||+|+. +.++++|+++||+|++.+... ..++||||+
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~d~p~vV~gVN~~~~~~~-----~~~IISnas 153 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP-GKGEDIGTYVVGVNHHEYDHE-----DHNIISNAS 153 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC-CCCCCCceEecccCHHHhccC-----CCCEEECCc
Confidence 5544 65 8999999999999999999999999999999995 777678999999999999731 367999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+++|++++|+||+++|+|+++.+||+|++|+.| +.+|.. + .+.+++|..++|+||+.++. .
T Consensus 154 CTTn~Lap~lkvL~~~fgI~~~~mTTiha~T~~q-~~~D~~-------~-----~d~r~~raaa~NiIPt~tGa-----a 215 (337)
T PRK07403 154 CTTNCLAPIAKVLHDNFGIIKGTMTTTHSYTGDQ-RILDAS-------H-----RDLRRARAAAVNIVPTSTGA-----A 215 (337)
T ss_pred HHHHHHHHHHHHHHHhcCeeEEEEEEEeeecCCc-cccccc-------c-----cccccccccccccccCCcch-----h
Confidence 9999999999999999999999999999999997 556642 2 25578899999999998873 2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEEeeCCCCCCCCcc-c
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVVIDDRASNHFPTP-L 326 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~~-~ 326 (376)
+ ++.+++|..+++++.+++|||+..||+.+++++++++++.||++++|+++. .--++...++ |-. .
T Consensus 216 k-------av~~vlP~L~gki~g~avRVPt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~---~~VS~ 285 (337)
T PRK07403 216 K-------AVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDL---PLVSS 285 (337)
T ss_pred h-------hhhhcCcccCCcEEEEEEEeccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecC---CEeee
Confidence 2 245789988889999999999999999999999999999999999999852 1112211110 111 1
Q ss_pred cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 327 EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 327 ~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
+..|...-.|--...-.. -+++-+.+++--|| -+|=|-+-+-.++.|
T Consensus 286 D~~~~~~s~i~D~~~t~v-~~~~~~k~~~WyDN-E~Gys~r~~dl~~~~ 332 (337)
T PRK07403 286 DYRGTDASSIVDASLTMV-MGGDMVKVIAWYDN-EWGYSQRVVDLAELV 332 (337)
T ss_pred eecCCCCCEEEEcccCEE-ecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 233332222210100000 11245778888999 677777766666543
No 30
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=4.2e-37 Score=305.27 Aligned_cols=292 Identities=14% Similarity=0.204 Sum_probs=216.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--------------Cc-----------eeeecCcceEEe--
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------------GK-----------QLSFQDKAYTVE-- 92 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--------------g~-----------~~~~~~~~~~v~-- 92 (376)
+||||+|+ |++|+.++|.+.++ ++++++++.++... |+ .+.++++.+.+.
T Consensus 86 ~kvgInGF-GRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~ 162 (421)
T PLN02272 86 TKIGINGF-GRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSK 162 (421)
T ss_pred eEEEEECc-CHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEec
Confidence 69999999 99999999988765 67999998763211 11 122234556665
Q ss_pred -ecCccCCC--CCcEEEEcCCCchhhhhHHHHHhCCC--eEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEE
Q 017153 93 -ELTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIA 167 (376)
Q Consensus 93 -~~~~~~~~--~~DvVf~a~~~~~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa 167 (376)
+++...|. ++|+||+|+|.+.++++++.++++|+ .|||+++ +++|+++||+|++.++. ..+|||
T Consensus 163 ~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~-----~dvPlvV~gVN~~~l~~------~~~IIS 231 (421)
T PLN02272 163 RDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP------NMNIVS 231 (421)
T ss_pred CCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCC-----CCCCeEEeccCHHHhCC------CCCeee
Confidence 33344576 89999999999999999999999999 7888873 36789999999999974 467999
Q ss_pred cCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCC
Q 017153 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 168 ~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~ 247 (376)
||+|+|+|++++|+||+++|+|+++.++|+|++||. ++.+| +.+.++.+++++.++|+||+.++.
T Consensus 232 naSCTTn~Lap~lk~L~~~fGI~~g~mTTvha~T~t-Q~llD-----------~~~~~d~r~~R~aa~NIIPt~tGa--- 296 (421)
T PLN02272 232 NASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTAT-QKTVD-----------GPSMKDWRGGRGASQNIIPSSTGA--- 296 (421)
T ss_pred CCCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCc-ccccc-----------CccccccccCCCcccccccCCCcc---
Confidence 999999999999999999999999999999999996 43333 222236688999999999998773
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEEeeCCCCCCCCc
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVVIDDRASNHFPT 324 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~ 324 (376)
. .|+.|+||.++++++.+|+||||++||+.+++++++++++.||++++|++++ .-.++...++ |-
T Consensus 297 --a-------kav~kVLP~L~gkl~gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~---~l 364 (421)
T PLN02272 297 --A-------KAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDE---DV 364 (421)
T ss_pred --c-------hhhhhcccccCCcEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccC---CE
Confidence 2 1468899988888999999999999999999999999999999999999753 2223322110 11
Q ss_pred c-ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 325 P-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 325 ~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
. .+..|..+-.|=-...-.. -+++-+.+++--|| -+|=+-+-+-.+..
T Consensus 365 VS~Df~~~~~ssi~D~~~t~~-~~~~~vKv~~WYDN-EwGys~R~~dl~~~ 413 (421)
T PLN02272 365 VSNDFVGDSRSSIFDAKAGIG-LSASFMKLVSWYDN-EWGYSNRVLDLIEH 413 (421)
T ss_pred eeeecCCCCCcEEEEcccCeE-ecCCEEEEEEEecC-chhHHHHHHHHHHH
Confidence 1 1333333322210000000 01256888899999 56666666555543
No 31
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.5e-35 Score=288.56 Aligned_cols=296 Identities=15% Similarity=0.194 Sum_probs=218.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CC----------ceeeecCcceEEe-ec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG----------KQLSFQDKAYTVE-EL 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g----------~~~~~~~~~~~v~-~~ 94 (376)
++||||+|+ |++|+.++|.+.++ ++++++++.+... .| +.+.++++.+.+. +-
T Consensus 2 ~~ki~INGf-GRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 2 KTKVAINGF-GRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNR 78 (343)
T ss_pred ceEEEEECc-ChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence 479999999 99999999998776 8899999975311 11 1222244556664 22
Q ss_pred Ccc--CC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 95 TED--SF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 95 ~~~--~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+++ .| .++|+||+|+|.+.++++++.++++||++||+|+. |.+++.|+ +||+|++.++.. ..++||||+
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~d~~l-V~gVN~~~~~~~-----~~~IISnaS 151 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP-GKNEDVTI-VVGVNEDQLDIE-----KHTIISNAS 151 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC-CCCCCCcE-EecccHHHhccC-----CCCEEECCc
Confidence 333 46 58999999999999999999999999999999966 87767777 779999999731 367999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+|+|++++|+||+++|+|+++.+||+|++||. ++.+|+++. ..+++|..+.|++|..++.+
T Consensus 152 CTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~-Q~~~D~~~~------------d~rr~R~a~~niiPtstgaa----- 213 (343)
T PRK07729 152 CTTNCLAPVVKVLDEQFGIENGLMTTVHAYTND-QKNIDNPHK------------DLRRARACGQSIIPTTTGAA----- 213 (343)
T ss_pred hHHHHHHHHHHHHHHhcCeeEEEEEEEecccCc-ccccccchh------------hhhcccccccceecCCCcch-----
Confidence 999999999999999999999999999999996 777875421 22445778999999776632
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEEeeCCCCCCCCcc-c
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVVIDDRASNHFPTP-L 326 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~~-~ 326 (376)
+. +.+++|..+++++.+++|||+++||+.+++++++++++.||++++|++++ .--++...++ |-. .
T Consensus 214 ----~a---i~~viP~l~gkl~g~avRVPt~~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~---~~VS~ 283 (343)
T PRK07729 214 ----KA---LAKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEE---PLVSI 283 (343)
T ss_pred ----hh---HHHhccccCCeEEEEEEEeeecCeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCC---Ccccc
Confidence 22 46889999999999999999999999999999999999999999999853 2223322111 111 1
Q ss_pred cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 327 EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 327 ~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+..|..+-.|--...-.. -+++-+.+++--|| -+|=|-+-+-.+..
T Consensus 284 D~~~~~~s~i~D~~~t~v-~~~~~~K~~~WYDN-E~Gys~r~~dl~~~ 329 (343)
T PRK07729 284 DFNTNTHSAIIDGLSTMV-MGDRKVKVLAWYDN-EWGYSCRVVDLVTL 329 (343)
T ss_pred ccCCCCcceEEEcccCeE-ecCCEEEEEEEecC-chHHHHHHHHHHHH
Confidence 333333222210000000 12256888888999 56655555554443
No 32
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=5.7e-35 Score=290.43 Aligned_cols=295 Identities=15% Similarity=0.191 Sum_probs=222.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CC-----------ceeeecCcceEEee
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG-----------KQLSFQDKAYTVEE 93 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g-----------~~~~~~~~~~~v~~ 93 (376)
+++||||+|+ |++|+.++|.+.++.++.++++++.+... .| +.+.++++.+.+..
T Consensus 74 ~~ikVgINGF-GRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~ 152 (442)
T PLN02237 74 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVS 152 (442)
T ss_pred ceEEEEEECC-ChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEE
Confidence 4689999999 99999999987654236799999875311 11 11222445666654
Q ss_pred c-Cc--cCC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEc
Q 017153 94 L-TE--DSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (376)
Q Consensus 94 ~-~~--~~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~ 168 (376)
. +| ..| .++|+||+|+|.+.++++++.++++|+++||+| ++|.++++|+++||+|++.++.. ..+||||
T Consensus 153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~dvptvV~GVN~~~~~~~-----~~~IISn 226 (442)
T PLN02237 153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEDDYDHE-----VANIVSN 226 (442)
T ss_pred cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCCCCceEecccCHHHhCcC-----CCCEEEC
Confidence 4 43 347 589999999999999999999999999999999 66877678999999999999731 2679999
Q ss_pred CCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 169 PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
|+|+++|++++|+||+++|+|+++.+||+|++|+.. ..+|. .| .+.+.+|..+.||||..++..
T Consensus 227 aSCTTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ-~~~D~-------~h-----~D~Rr~Raaa~nIIPtsTGAA--- 290 (442)
T PLN02237 227 ASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ-RLLDA-------SH-----RDLRRARAAALNIVPTSTGAA--- 290 (442)
T ss_pred CchHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCc-ccccC-------CC-----cccccccccccccccCCcchh---
Confidence 999999999999999999999999999999999984 44552 11 256788999999999988842
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCC-CCCHHHHHHHHHhCC---CcEEeeCCCCCCCCc
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEK-PLDEDTARDILKNAP---GVVVIDDRASNHFPT 324 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~-~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~ 324 (376)
|. +.+++|.+++++.+.++|||+..|.+.++++++++ +++.|||+++|+++. .--++...++ |-
T Consensus 291 ------kA---v~~VlP~L~GKl~g~A~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~---pl 358 (442)
T PLN02237 291 ------KA---VSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDV---PL 358 (442)
T ss_pred ------hh---hceecccCCCceeeEEEecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCC---ce
Confidence 33 57889999999999999999999999999999998 799999999999852 1122221110 21
Q ss_pred c-ccccCCCceEE-----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 325 P-LEVSNKDDVAV-----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 325 ~-~~v~g~~~v~v-----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
. .+..|...-.| +... +++-+.+++--|| -+|=+-+-+-.++.
T Consensus 359 VS~Df~~~~~Ssi~D~~~t~v~------~~~~vKv~aWYDN-EwGys~R~~dl~~~ 407 (442)
T PLN02237 359 VSVDFRCSDVSSTIDASLTMVM------GDDMVKVVAWYDN-EWGYSQRVVDLAHL 407 (442)
T ss_pred eeeeecCCCcceEEEcccCEEe------CCCEEEEEEEeCC-chhHHHHHHHHHHH
Confidence 1 13334333333 1111 1255778888999 66766666655544
No 33
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=100.00 E-value=2.8e-36 Score=272.82 Aligned_cols=179 Identities=38% Similarity=0.598 Sum_probs=161.8
Q ss_pred HhHHHHh-CCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC--chHHHHHH
Q 017153 180 ATPLHRR-AKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG--YNEEEMKM 256 (376)
Q Consensus 180 L~pL~~~-~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g--~~~ee~k~ 256 (376)
|+||+++ +++++|+|++|||+||||++|+++|++|+..++++++.....+..++++|++||..++.+.+ +++||++.
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 7899998 88899999999999999999999999999999999988888999999999999998877888 89999999
Q ss_pred HHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeC-CCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccC-CCce
Q 017153 257 VKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFE-KPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSN-KDDV 334 (376)
Q Consensus 257 ~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~-~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g-~~~v 334 (376)
..|.+++++... .+++|||||||+|||++++|++++ ++.+.++++++|.+.|++.|...+ ++.+|+|+++.| +|+|
T Consensus 81 ~~~~~~~l~~~~-~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~P~~~~v~g~~n~~ 158 (184)
T PF02774_consen 81 IAETRKILGFPP-RVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKGPEPFVRVDP-EGDYPTPKDVVGGTNFV 158 (184)
T ss_dssp HHHHHHHCTETT-EEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTSTTEEEEESS-HTHHSSHHHHTTTSSSE
T ss_pred hccccceeeccc-cccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCCCCcEEEEcC-CCCccccHhhccCCCeE
Confidence 999999998655 999999999999999999999995 888999999999987677666543 356899999999 9999
Q ss_pred EEEEEEeccCCCCCCeEEEEEEechHHh
Q 017153 335 AVGRIRRDVSQDGNHGLDIFVCGDQVRK 362 (376)
Q Consensus 335 ~vg~~~~~~~~~~~~~~~~~~~~DNL~k 362 (376)
+|||+|.|.. .++.+++|+++|||+|
T Consensus 159 ~Vgrvr~d~~--~~~~l~~~~~~DNL~K 184 (184)
T PF02774_consen 159 DVGRVRVDPR--DPRGLVVWSVIDNLRK 184 (184)
T ss_dssp EEEEEEEETT--TTTEEEEEEEEETTTT
T ss_pred EEEEEEECCC--CCCEEEEEEEEccccC
Confidence 9999998753 2357999999999998
No 34
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-32 Score=270.56 Aligned_cols=241 Identities=17% Similarity=0.274 Sum_probs=182.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC---------Cceee---------ecCcceEEeecCccCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---------GKQLS---------FQDKAYTVEELTEDSFD 100 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~---------g~~~~---------~~~~~~~v~~~~~~~~~ 100 (376)
++||||+|+ |.+|+.+++.+.++ |+++++++.+.+.. |..+. +.+..+.+.....+.+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~--~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQ--PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcC--CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 489999999 99999999999887 99999998864321 11100 11122334322222346
Q ss_pred CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHH
Q 017153 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180 (376)
Q Consensus 101 ~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L 180 (376)
++|+||+|+|.+.+.++++.++++|++|||.++.++..+++++ +||+|++.+. +..+|+||||+||+++++|
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~~~~~~~~~~-v~~vN~~~~~-------~~~~v~~~sCtT~~l~~~l 149 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGEKAEVAGVSF-NALANYEEAL-------GKDYVRVVSCNTTGLCRTL 149 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCCCCCCCCCcE-EeeECHHHhC-------CCCcEEccChHHHHHHHHH
Confidence 8999999999999999999999999999999998876556666 9999999886 3348999999999999999
Q ss_pred hHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHH
Q 017153 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKET 260 (376)
Q Consensus 181 ~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~ 260 (376)
+||++.|||+++.+||+|++|+-+ +++ +....|++|....++. ... .++
T Consensus 150 ~~L~~~fgI~~~~vTtv~a~td~~---------~~~--------------r~~~~niip~p~~~~~--~~g------~~v 198 (341)
T PRK04207 150 CALDRAFGVKKVRATLVRRAADPK---------EVK--------------RGPINAIVPDPVTVPS--HHG------PDV 198 (341)
T ss_pred HHHHHhcCceEEEEEEEEcCCCcc---------hhh--------------HHHhcCcCCCCCCCCC--Cch------hHH
Confidence 999999999999999999988531 110 1112334432111000 000 136
Q ss_pred HHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcc
Q 017153 261 RKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP 325 (376)
Q Consensus 261 ~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~ 325 (376)
+++++. ++++.+|+|||+++||+.+++++|+++++.+|++++|++++.+.++++. ...|+|
T Consensus 199 ~~vlp~--l~i~~~avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~--~~~~s~ 259 (341)
T PRK04207 199 KTVLPD--LDITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRAS--DGIDST 259 (341)
T ss_pred HhhCCC--CceEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccc--cCCCCh
Confidence 778865 4599999999999999999999999999999999999999999999653 234554
No 35
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4.1e-31 Score=257.46 Aligned_cols=289 Identities=13% Similarity=0.091 Sum_probs=203.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--------------CCCc----eeee-------cC-cceEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--------------SAGK----QLSF-------QD-KAYTVE 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--------------~~g~----~~~~-------~~-~~~~v~ 92 (376)
++||||+|+ |++|+.++|.+.++ +.++++++.+.. ..|+ .+.. ++ +.+.+.
T Consensus 2 ~~kv~INGf-GRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~ 78 (342)
T PTZ00353 2 PITVGINGF-GPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVS 78 (342)
T ss_pred CeEEEEECC-ChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEE
Confidence 479999999 99999999998776 889999997521 1122 1211 23 345543
Q ss_pred -ecCcc--CCC--CCcEEEEcCCCchhhhhHHHHHhCC---CeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCc
Q 017153 93 -ELTED--SFD--GVDIALFSAGGSISKKFGPIAVEKG---SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGA 164 (376)
Q Consensus 93 -~~~~~--~~~--~~DvVf~a~~~~~s~~~~~~~~~~G---~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~ 164 (376)
+-+++ .|. ++|+||+|+|.+.+.+.+..++++| +.|+|.| +++|+++||+|++.++. ..+
T Consensus 79 ~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps------~d~p~vV~gVN~~~~~~------~~~ 146 (342)
T PTZ00353 79 AKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQS------ADAPTVMAGSNDERLSA------SLP 146 (342)
T ss_pred ecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCC------CCCCeEEecCChHHcCC------CCC
Confidence 33333 476 9999999999996666666666555 4455554 34799999999999974 367
Q ss_pred EEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEE---ccccccCh-HhHHHHHHHhhhhhcCCCCCccccccccccccccc
Q 017153 165 LIANPNCSTIICLMAATPLHRRAKVTRMVVSTY---QAASGAGA-AAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240 (376)
Q Consensus 165 iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~---~gvSGaGr-~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph 240 (376)
+||||+|+|+|++++++||+++|+|+++.+||+ |..|+.|. .++++ ..+..|..+.|++|.
T Consensus 147 IISnaSCTTn~LapvlkvL~~~fGI~~g~mTTvHs~q~~~~~d~~~~~~~---------------d~rr~RaA~~nIiPt 211 (342)
T PTZ00353 147 VCCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGMQPQEPIAARSKNSQ---------------DWRQTRVAIDAIAPY 211 (342)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCeeEEEeeeeeecceeecCCCcccccc---------------cccccchHHhCCccc
Confidence 999999999999999999999999999999999 66666655 33332 224456667788997
Q ss_pred CCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCC
Q 017153 241 NAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDR 317 (376)
Q Consensus 241 ~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~ 317 (376)
.++. ..|+.|++|.++++++.+++|||+++|++.+++++++++++.||++++|+++ +.-.++...
T Consensus 212 stga------------akav~kVlP~L~gkl~g~avRVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~ 279 (342)
T PTZ00353 212 RDNG------------AETVCKLLPHLVGRISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCIS 279 (342)
T ss_pred CCcc------------hhhhhhhccccCCcEEEEEEEccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEec
Confidence 6652 1457899998888999999999999999999999999999999999999974 222233221
Q ss_pred CCCCCCcc-ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 318 ASNHFPTP-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 318 ~~~~~p~~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
++ |-. .+..|...+ |--...-....+++-+.+++--|| -+|=|-+-+-.+..
T Consensus 280 ~~---~~VS~Df~~~~~s-i~D~~~t~~~~~~~~vKv~~WYDN-E~Gys~r~~dl~~~ 332 (342)
T PTZ00353 280 KR---DMISVDCIPNGKL-CYDATSSSSSREGEVHKMVLWFDV-ECYYAARLLSLVKQ 332 (342)
T ss_pred CC---CeeeeEeCCCCCe-EEEcccCeEEeCCCEEEEEEEecC-chHHHHHHHHHHHH
Confidence 11 211 133443332 211110000002256888888999 67777766665554
No 36
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-30 Score=259.81 Aligned_cols=298 Identities=13% Similarity=0.200 Sum_probs=220.2
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC--CCCeEEEEEecCCC-C----------------Cc---eee---------ecC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD--FPYRSIKMLASKRS-A----------------GK---QLS---------FQD 86 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~--~p~~~l~~v~s~~~-~----------------g~---~~~---------~~~ 86 (376)
++.||+|.|+ |++|+.++|++.++. .+.++++++..+.. . |+ .+. .++
T Consensus 126 ~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing 204 (477)
T PRK08289 126 EPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANG 204 (477)
T ss_pred CCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECC
Confidence 3579999999 999999999987641 14799999853211 0 11 011 022
Q ss_pred cceEEe-ecCccC--CC--CCc--EEEEcCCCchhhhhHHHHHh-CCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCccc
Q 017153 87 KAYTVE-ELTEDS--FD--GVD--IALFSAGGSISKKFGPIAVE-KGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158 (376)
Q Consensus 87 ~~~~v~-~~~~~~--~~--~~D--vVf~a~~~~~s~~~~~~~~~-~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~ 158 (376)
+.+.+. +-+|++ |. ++| +|++|+|.+...+.+..+++ +|++-|-+|++. ++++|.++|++|++.+..
T Consensus 205 ~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~--k~d~p~iV~GVN~~~~~~--- 279 (477)
T PRK08289 205 NYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPG--KGDIKNIVHGVNHSDITD--- 279 (477)
T ss_pred EEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCC--CCCCCeEEcccCHHHhCC---
Confidence 334443 334443 53 899 99999999999998888888 898877789884 456799999999999973
Q ss_pred CCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCccccccccccccc
Q 017153 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLF 238 (376)
Q Consensus 159 ~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~nii 238 (376)
..+|||||+|+|+|++++|+||+++|||++..++|+|++|+ |+.++|+++ . ..+++|+.++|+|
T Consensus 280 ---~~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~-dQ~lvD~~h-------k-----d~RrgRaaa~NII 343 (477)
T PRK08289 280 ---EDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTN-DQNLIDNYH-------K-----GDRRGRSAPLNMV 343 (477)
T ss_pred ---CCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccC-ChHHhhhhh-------h-----cCcccceeeeeeE
Confidence 46799999999999999999999999999999999999999 799999642 1 3588899999999
Q ss_pred ccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC----CcEEe
Q 017153 239 SHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP----GVVVI 314 (376)
Q Consensus 239 ph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~----~v~v~ 314 (376)
|..++.. .++.++||.++++++.+++|||+++|++.+++++++++++.||++++|+++. .-.++
T Consensus 344 ptsTGAA------------kAv~kVLP~L~GKltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil 411 (477)
T PRK08289 344 ITETGAA------------KAVAKALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQI 411 (477)
T ss_pred ecCCChh------------hhhhhcccccCCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCcccee
Confidence 9877632 2468899999999999999999999999999999999999999999999842 22233
Q ss_pred eCCCCCCCCccc--cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 315 DDRASNHFPTPL--EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 315 ~~~~~~~~p~~~--~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
+...+ |..+ +..|+..-.|=-...-.. . ++.+.+++--|| -+|=+-|-+-.++.|
T Consensus 412 ~yt~~---~~lVSsDfig~~~SsI~D~~~T~v-~-g~~vkv~~WYDN-E~GYS~rvvdl~~~~ 468 (477)
T PRK08289 412 DYTDS---TEVVSSDFVGSRHAGVVDSQATIV-N-GNRAVLYVWYDN-EFGYSCQVVRVMEQM 468 (477)
T ss_pred eeccc---CCeeeeeecCCCchhheehhccEE-c-CCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 22111 1111 223333222210000000 1 256888888999 678887777776654
No 37
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=3.3e-28 Score=236.98 Aligned_cols=301 Identities=13% Similarity=0.144 Sum_probs=216.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC--CCCeEEEEEecCC-C-------------CCc---eee---------------
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD--FPYRSIKMLASKR-S-------------AGK---QLS--------------- 83 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~--~p~~~l~~v~s~~-~-------------~g~---~~~--------------- 83 (376)
|++||||+|+ |++||.++|.+.+++ .+.++++++.++. . .|+ .+.
T Consensus 2 m~ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 2 APIKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CceEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 4589999999 999999999877641 1579999997631 1 121 111
Q ss_pred ecCcceEE--eecCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcc
Q 017153 84 FQDKAYTV--EELTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157 (376)
Q Consensus 84 ~~~~~~~v--~~~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~ 157 (376)
.+++.+.+ .+-+|.+ |. ++|+|++|+|.+.+++.+..++++|+|-|-+|++. +++.+..+.++|++.++..
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~--~d~~~t~V~GVN~~~y~~~- 157 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPA--SGGAKTIVMGVNQHEYSPT- 157 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCC--CCCCceEEEcCChHHcCcc-
Confidence 12334443 3334554 53 89999999999999999999999999877788874 3334789999999999731
Q ss_pred cCCCCCcEEEcCCchHHHHHHHHhHH-HHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCccccccccccc
Q 017153 158 VGMGKGALIANPNCSTIICLMAATPL-HRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFN 236 (376)
Q Consensus 158 ~~~~~~~iVa~PgC~~ta~~l~L~pL-~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~n 236 (376)
..++|||.+|+|+|+++.++.| +++|||++..+||+|++++. ++.+|. .+ -.+.+.+|..+.|
T Consensus 158 ----~~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~-Q~~~D~-------~~----~kD~Rr~Raaa~n 221 (361)
T PTZ00434 158 ----EHHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTAT-QKTVDG-------VS----VKDWRGGRAAAVN 221 (361)
T ss_pred ----cCcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCC-cccccC-------cC----ccccccccccccc
Confidence 2579999999999999999999 79999999999999999998 444552 11 1256788999999
Q ss_pred ccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEE
Q 017153 237 LFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVV 313 (376)
Q Consensus 237 iiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v 313 (376)
+||..++.+ |+ +.+++|.+++++...++|||+..|.+.+++++++++++.|||+++|+++. .--+
T Consensus 222 IIPtsTGAA---------kA---v~~VlP~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgI 289 (361)
T PTZ00434 222 IIPSTTGAA---------KA---VGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGI 289 (361)
T ss_pred CccCCcchh---------hh---hceeccccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCc
Confidence 999988842 33 57899999999999999999999999999999999999999999999852 2222
Q ss_pred eeCCCCCCCCcc-ccccCCCceEEEEEEeccCCC--C-CCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 314 IDDRASNHFPTP-LEVSNKDDVAVGRIRRDVSQD--G-NHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 314 ~~~~~~~~~p~~-~~v~g~~~v~vg~~~~~~~~~--~-~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+...++ |-. .+..|..+-.|--...-.... + ++-+.+++--|| -+|=|-+-+-.+..
T Consensus 290 l~y~~~---plVS~Df~g~~~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDN-EwGys~Rl~dl~~~ 350 (361)
T PTZ00434 290 LGFTDD---ELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDN-EWGYSHRVVDLVRY 350 (361)
T ss_pred ccccCC---CccccccCCCCCCeEEEhhhCeEeccCCCCCEEEEEEEecC-chHHHHHHHHHHHH
Confidence 221110 111 133333332221000000000 1 256888999999 66766666655543
No 38
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6.5e-28 Score=230.86 Aligned_cols=236 Identities=18% Similarity=0.210 Sum_probs=192.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCC-------------CCc----------eeeecCcceEEe-e
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRS-------------AGK----------QLSFQDKAYTVE-E 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~-------------~g~----------~~~~~~~~~~v~-~ 93 (376)
++||||+|+ |++|+.++|++.++ + ++|++++..... .|. .+.+++..+.+. .
T Consensus 1 ~ikV~INGf-GrIGR~v~ra~~~~--~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~ 77 (335)
T COG0057 1 MIKVAINGF-GRIGRLVARAALER--DGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAE 77 (335)
T ss_pred CcEEEEecC-cHHHHHHHHHHHhC--CCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEec
Confidence 489999999 99999999999988 7 799999975211 111 122234456665 3
Q ss_pred cCccC--C--CCCcEEEEcCCCchhhhhHHHHHhC-CCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEc
Q 017153 94 LTEDS--F--DGVDIALFSAGGSISKKFGPIAVEK-GSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (376)
Q Consensus 94 ~~~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~-G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~ 168 (376)
.+|+. | .++|+|++|+|.+.+++.+++++++ |+|.|-.|++- .++++.++.++|++.+.. +..+|||
T Consensus 78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~--~~~~~~vv~gvn~~~~~~------~~~iVsn 149 (335)
T COG0057 78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG--KDDVATVVYGVNHNYYDA------GHTIVSN 149 (335)
T ss_pred CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC--CCCccEEEEeccccccCC------CCcEEEE
Confidence 34444 3 2678999999999999999998887 58877788875 334899999999999874 5789999
Q ss_pred CCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 169 PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
.+|+|||+++.+++|.+.|||+++.+||+|++++..+ -.+. .| .+.++.|.++-|+||..++.+
T Consensus 150 aSCTTNcLap~~kvl~d~fGI~~g~mTtVh~~T~dQ~-~~dg-------ph-----~~~rr~raa~~niIp~sTgaA--- 213 (335)
T COG0057 150 ASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAYTNDQK-LVDG-------PH-----KDLRRARAAALNIIPTSTGAA--- 213 (335)
T ss_pred ccchhhhhHHHHHHHHHhcCeeEEEEEEEEcccCCCc-cccC-------cc-----cchhhhccccCCCCcCCCcch---
Confidence 9999999999999999999999999999999999843 3442 12 246778899999999766632
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCC
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG 310 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~ 310 (376)
|. +.+++|.+++++...++|||+..+|+.+++++++++++.|||+++|++++-
T Consensus 214 ------ka---v~~VlP~L~gKl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~ 266 (335)
T COG0057 214 ------KA---VGLVLPELKGKLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASE 266 (335)
T ss_pred ------hh---hhhhCcccCCceeeEEEEecCCCcEEEEEEEEeCCCCCHHHHHHHHHHhhc
Confidence 33 578899999999999999999999999999999999999999999998753
No 39
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.94 E-value=1.1e-26 Score=196.21 Aligned_cols=112 Identities=35% Similarity=0.539 Sum_probs=99.1
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecC------cceEEeecCccCCCCCcEEEEcCCCch
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQD------KAYTVEELTEDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~------~~~~v~~~~~~~~~~~DvVf~a~~~~~ 113 (376)
||+|+|||||+|++|+++|.+| |.++++.+.+++. .|+.+.+.. .++.+.+.+.+.+.++|+||+|+|++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~ 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH
Confidence 7999999999999999999997 9999998877766 999887642 356666656666789999999999999
Q ss_pred hhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+++++++++++|++|||+|++||+++++||++||||+++++
T Consensus 79 ~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 79 SKELAPKLLKAGIKVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp HHHHHHHHHHTTSEEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred HHHHHHHHhhCCcEEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 99999999999999999999999999999999999999987
No 40
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=99.90 E-value=2.4e-22 Score=195.96 Aligned_cols=229 Identities=17% Similarity=0.237 Sum_probs=175.1
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC---------Cceeeec---------CcceEEeecCccC-CCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---------GKQLSFQ---------DKAYTVEELTEDS-FDGV 102 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~---------g~~~~~~---------~~~~~v~~~~~~~-~~~~ 102 (376)
|||+|+ |++|+.++|.+.++ |+++++++++.+.. |...... ...+.+.. ++++ +.++
T Consensus 1 VaInG~-GrIGr~varav~~~--~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g-~~eeLl~~v 76 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQ--DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAG-TLEDLLEKV 76 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhC--CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecC-CHHHHhhcC
Confidence 699999 99999999998876 89999999863321 1000000 00122211 1222 3689
Q ss_pred cEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCC-CCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHh
Q 017153 103 DIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE-NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAAT 181 (376)
Q Consensus 103 DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~-~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~ 181 (376)
|+|+.|+|.+.....++.+.+.|++.|=.|+... + ..+..+.++|++.+. +..+|+|.+|+|||+++.++
T Consensus 77 DiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~--~~~~~tfv~gvN~~~~~-------~~~~vs~aSCtTn~Lap~~~ 147 (333)
T TIGR01546 77 DIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA--EVADVSFVAQANYEAAL-------GKDYVRVVSCNTTGLVRTLN 147 (333)
T ss_pred CEEEECCCCCCChhhHHHHHhCCcCEEEECCCCC--CCCCceEEeeeCHHHcC-------cCceEEecCchHhhHHHHHH
Confidence 9999999999999999999999999887888742 2 135799999999987 34499999999999999999
Q ss_pred HHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHH
Q 017153 182 PLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261 (376)
Q Consensus 182 pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~ 261 (376)
+|++.|||+++.+|++|. ++..+ | .+.++ +.|++|.-.++|. . . .+. +.
T Consensus 148 ~L~~~fGI~~~~~Ttvh~-t~dq~---d-----------------~rrgr--~~~IiP~~~t~ps---~-~-a~a---v~ 196 (333)
T TIGR01546 148 AINDYSKVDKVRAVMVRR-AADPN---D-----------------VKKGP--INAIVPDPVTVPS---H-H-GPD---VQ 196 (333)
T ss_pred HHHHhcCeEEEEEEEEee-cCChh---h-----------------hccCc--hhceEeCCCCCCC---c-h-HHH---HH
Confidence 999999999999999995 44421 1 12222 5889987322222 0 1 222 57
Q ss_pred HHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeC
Q 017153 262 KIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDD 316 (376)
Q Consensus 262 ~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~ 316 (376)
+++|.++ +...++|||+..+|+.+++++++++++.+|++++|+++|.|.+++.
T Consensus 197 ~VlP~L~--i~g~AvrVPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~ri~~~~~ 249 (333)
T TIGR01546 197 TVIPNLN--IETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENTPRVLLFEK 249 (333)
T ss_pred HcCCCCC--ccEEEEEeCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCcEEEEec
Confidence 8888765 9999999999999999999999999999999999999999998854
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.87 E-value=6.2e-21 Score=183.49 Aligned_cols=225 Identities=17% Similarity=0.242 Sum_probs=162.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceeee-cCcceEEeecC----ccCCCCCcEEEEcCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF-QDKAYTVEELT----EDSFDGVDIALFSAG 110 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~~-~~~~~~v~~~~----~~~~~~~DvVf~a~~ 110 (376)
+++||||+| +|.+|..++..+.+. |.++++++++.+. .|..... .+........+ ..+|.++|+||+|+|
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~--~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~ 79 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRS--EHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATS 79 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcC--CCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCC
Confidence 469999999 699999999888776 8999999987643 2322111 11111111111 223578999999999
Q ss_pred CchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCc
Q 017153 111 GSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVT 190 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~ 190 (376)
+..+.++++++.++|+.|||+++.+ ..||++||+|.+++... .+.++|+||||.++.++++|+|+. ...+.
T Consensus 80 a~~H~e~a~~a~eaGk~VID~sPA~----~~PlvVP~VN~~~~~~~----~~~~iia~p~~ati~~v~Al~~v~-~~~~~ 150 (302)
T PRK08300 80 AGAHVRHAAKLREAGIRAIDLTPAA----IGPYCVPAVNLDEHLDA----PNVNMVTCGGQATIPIVAAVSRVA-PVHYA 150 (302)
T ss_pred HHHHHHHHHHHHHcCCeEEECCccc----cCCcccCcCCHHHHhcc----cCCCEEECccHHHHHHHHHhcccC-cCcee
Confidence 9999999999999999999999998 56999999999988642 146899999999999999999965 44666
Q ss_pred EEEEEEEcccc-ccC-hHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCC
Q 017153 191 RMVVSTYQAAS-GAG-AAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKD 268 (376)
Q Consensus 191 ~v~v~t~~gvS-GaG-r~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~ 268 (376)
+++ .|+++.| |.| |..+||+.++|...+. +.++. +. .+
T Consensus 151 eIv-at~~s~s~g~gtr~nidE~~~~t~~~~~-------------------~~~g~-~~-------------------~k 190 (302)
T PRK08300 151 EIV-ASIASKSAGPGTRANIDEFTETTSRAIE-------------------KVGGA-AR-------------------GK 190 (302)
T ss_pred eee-eeehhhccCCcccccHHHHHHHHHHHHH-------------------HhcCc-cc-------------------ce
Confidence 777 8899999 999 8899999888876432 22221 10 01
Q ss_pred CcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh--------CCCcEEeeC
Q 017153 269 VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN--------APGVVVIDD 316 (376)
Q Consensus 269 ~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~--------~~~v~v~~~ 316 (376)
--+...|--=|+. +--|+|+..+.+.+.+.|++...+ -|+-|+...
T Consensus 191 ai~~~npa~p~~~--m~~tv~~~~~~~~~~~~i~~~~~~~~~~v~~yvpgy~l~~~ 244 (302)
T PRK08300 191 AIIILNPAEPPLI--MRDTVYCLVDEDADQDAIEASVHAMVAEVQAYVPGYRLKQE 244 (302)
T ss_pred EEEEecCCCCCcc--ceeeEEEeeCCCCCHHHHHHHHHHHHHHHHhhCCCEEeecc
Confidence 1133344333432 345777777766888888877765 288888644
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.74 E-value=2.6e-17 Score=157.93 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=128.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--CceeeecCcceEEeecCccC-C--CCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~ 113 (376)
++||||+|+ |.+|+.++..+.+. +.++++++.+.+.. +...... ..+.....+.+. + .++|+||+|+|+..
T Consensus 1 klrVAIIG~-G~IG~~h~~~ll~~--~~~elvaV~d~d~es~~la~A~~-~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~ 76 (285)
T TIGR03215 1 KVKVAIIGS-GNIGTDLMYKLLRS--EHLEMVAMVGIDPESDGLARARE-LGVKTSAEGVDGLLANPDIDIVFDATSAKA 76 (285)
T ss_pred CcEEEEEeC-cHHHHHHHHHHHhC--CCcEEEEEEeCCcccHHHHHHHH-CCCCEEECCHHHHhcCCCCCEEEECCCcHH
Confidence 479999997 99999998777665 88999998865432 2111110 011111111122 2 47999999999999
Q ss_pred hhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
+.+++.+++++|+.|||+++.+ ..||++|++|.+++... .+.++|+||+|.++.+..+|+++++...+ .+
T Consensus 77 H~e~a~~al~aGk~VIdekPa~----~~plvvp~VN~~~~~~~----~~~~iv~c~~~atip~~~al~r~~d~~~~--~i 146 (285)
T TIGR03215 77 HARHARLLAELGKIVIDLTPAA----IGPYVVPAVNLDEHLDA----PNVNMVTCGGQATIPIVAAISRVAPVHYA--EI 146 (285)
T ss_pred HHHHHHHHHHcCCEEEECCccc----cCCccCCCcCHHHHhcC----cCCCEEEcCcHHHHHHHHHHHHhhccccE--EE
Confidence 9999999999999999999998 56999999999887742 14689999999999999999999987644 56
Q ss_pred EEEEccccc-c-ChHhHHHHHHHhhhh
Q 017153 194 VSTYQAASG-A-GAAAMEELELQTREV 218 (376)
Q Consensus 194 v~t~~gvSG-a-Gr~~~~~l~~q~~~~ 218 (376)
++++++.|+ . ||.+++++.+||.+-
T Consensus 147 v~ti~s~S~g~g~r~~idel~~~t~~~ 173 (285)
T TIGR03215 147 VASIASRSAGPGTRANIDEFTETTSRA 173 (285)
T ss_pred EEEEEeeccCCCchhHHHHHHHHHHHH
Confidence 777999995 8 599999998887653
No 43
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=99.63 E-value=1.6e-15 Score=127.83 Aligned_cols=112 Identities=46% Similarity=0.667 Sum_probs=87.1
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec-CCCCCceeeecCcceE---EeecCccCC--CCCcEEEEcCCCchh
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS-KRSAGKQLSFQDKAYT---VEELTEDSF--DGVDIALFSAGGSIS 114 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s-~~~~g~~~~~~~~~~~---v~~~~~~~~--~~~DvVf~a~~~~~s 114 (376)
|++|+|++|++|..+++.|.++ |.+++.++.+ +++.|+.+.+.+..+. +...+.+.+ .++|+||+|+|.+..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~ 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH
Confidence 6899999999999999999988 8899988844 4456665544322221 122333444 489999999999999
Q ss_pred hhhHHH---HHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 115 KKFGPI---AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 115 ~~~~~~---~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
.+.+.. ..+.|+.|||+|+++|++++++|++|++|+++++
T Consensus 79 ~~~~~~~~~~~~~g~~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 79 KEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred HHHHHHHHhhhcCCCEEEECCccccCCCCceEEcCccCHHHhc
Confidence 886543 3478999999999999999999999999999875
No 44
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=99.44 E-value=5.8e-13 Score=116.57 Aligned_cols=121 Identities=20% Similarity=0.302 Sum_probs=90.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-----------------eee-------ecCcceEEe-ec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-----------------QLS-------FQDKAYTVE-EL 94 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-----------------~~~-------~~~~~~~v~-~~ 94 (376)
+||||+|+ |++|+.++|.+..+ |+++++++.+....-+ .+. ..++.+.+. ..
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTS
T ss_pred CEEEEECC-CcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhh
Confidence 58999999 99999999999987 9999999986541111 111 123334443 33
Q ss_pred CccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCC-CcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 95 TEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN-VPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 95 ~~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~-~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
+|++ | .++|+|++|+|.+.+++.++.++++|++-|-+|++. .++ .+..+.++|.+.+.. +.++||+.
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~--~~~~~~t~V~GvN~~~~~~------~~~iIS~a 149 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPS--KDDADPTFVMGVNHDDYDP------EHHIISNA 149 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS---SSSSSEEE-TTTSGGGGTT------TTSEEEE-
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeecccc--ccccCCeEEeeccHHHhCC------CCCEEEcc
Confidence 4554 4 489999999999999999999999999977788876 333 789999999999984 33899999
Q ss_pred Cc
Q 017153 170 NC 171 (376)
Q Consensus 170 gC 171 (376)
+|
T Consensus 150 SC 151 (151)
T PF00044_consen 150 SC 151 (151)
T ss_dssp -H
T ss_pred CC
Confidence 99
No 45
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=4e-12 Score=118.83 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=145.7
Q ss_pred CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHH
Q 017153 100 DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~ 179 (376)
.++|++...++.+.+.+.+..+.+.|++.+-.|+.- .+.|..+.+||.+.+.. ...+|||.+|+++|+++.
T Consensus 73 ~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps---~dapmfv~gVn~~~y~~------~~~iiSnascttnclaPl 143 (285)
T KOG0657|consen 73 KGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPS---ADAPMFVMGVNGEKYDN------SLDIISNASCTTNCLAPL 143 (285)
T ss_pred ccceeEeeccccccccccccccccccceEEEecccc---CCCCccccccccccccc------ccceeechhhhhccccch
Confidence 488999999999999999998888898866666652 36899999999999985 345899999999999999
Q ss_pred HhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHH
Q 017153 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKE 259 (376)
Q Consensus 180 L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e 259 (376)
.+.++++|+|.+-.++|.|+++.-.+. ++. ...+.++.++....|+||...+. .|+
T Consensus 144 aKVi~d~fgI~EgLMtTvha~tatQkt-vdg-----------ps~k~wr~g~~a~qNIiPASTgA---------akA--- 199 (285)
T KOG0657|consen 144 AKVIHDNFGIMEGLMTTVHAITATQKT-VDG-----------PSGKLWRDGRRALQNIIPASTGA---------AKA--- 199 (285)
T ss_pred hheeccccccccccccceeeecccccc-ccC-----------cccccccccchhhhccccccccH---------HHH---
Confidence 999999999999899999999987553 442 11234556666779999987773 244
Q ss_pred HHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC
Q 017153 260 TRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP 309 (376)
Q Consensus 260 ~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~ 309 (376)
..|+++.+..+++..+.+||+. ....+++++++++.+-|+++++++.+.
T Consensus 200 VgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvvk~~~ 248 (285)
T KOG0657|consen 200 VGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVVKLAS 248 (285)
T ss_pred HHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHHHHhh
Confidence 4777888888999999999999 899999999999999999999999853
No 46
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.24 E-value=1.3e-10 Score=101.71 Aligned_cols=121 Identities=20% Similarity=0.309 Sum_probs=89.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-------------Cc---eeee-------cCcceEEe-ecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLSF-------QDKAYTVE-ELT 95 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-------------g~---~~~~-------~~~~~~v~-~~~ 95 (376)
+||||+|+ |.+|+.+++.+.++ +.++++++.+.... |+ .+.. .++.+.+. .-+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCC
Confidence 58999999 99999999999877 89999988763111 11 0100 12223332 223
Q ss_pred ccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCc
Q 017153 96 EDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 96 ~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC 171 (376)
+.+ | .++|+|++|+|...+++.++.++++|++-|-+|++. +++.+..+.++|++++.. +.++|||.+|
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~--~~~~~t~V~GvN~~~~~~------~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA--KDADKTFVYGVNHDEYDP------EDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC--CCCCceEEEeechHHcCC------CCCEEEcCCC
Confidence 332 4 489999999999999998889999999877788885 333458999999999974 3559999999
No 47
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.13 E-value=1.8e-10 Score=101.59 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=90.0
Q ss_pred HHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHH
Q 017153 176 CLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMK 255 (376)
Q Consensus 176 ~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k 255 (376)
+++.+++|+++|||+++.++++|+++... +.+|.. + .+.+.++..+.|++|..+.. .+
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q-~~~D~~-------~-----~d~rrgr~a~~niip~~t~a---------a~ 58 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQ-KLVDGP-------H-----KDWRRGRAAAQNIIPTSTGA---------AK 58 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTS-BSSSS--------------SSTGTTSBTTTSSEEEEESH---------HH
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCcc-ceeeec-------c-----cccccccccccccccccccc---------ch
Confidence 57889999999999999999999999884 335421 1 25677788899999987662 12
Q ss_pred HHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC
Q 017153 256 MVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA 308 (376)
Q Consensus 256 ~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~ 308 (376)
. +.+++|.+++++...++|||+..||+.+++++++++++.|||+++|+++
T Consensus 59 a---v~~VlP~L~gki~g~a~rVPt~~~s~~dl~~~l~k~~t~eeV~~~~~~a 108 (157)
T PF02800_consen 59 A---VGKVLPELNGKITGMAVRVPTPNVSLHDLTVELEKPVTKEEVNEALKQA 108 (157)
T ss_dssp H---HHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSSS-HHHHHHHHHHH
T ss_pred h---hhhhhhhccCcceeeEEeeeecccCceEEEEecccchhhhhhhhhhhhh
Confidence 2 5889998889999999999999999999999999999999999999984
No 48
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.88 E-value=3.4e-09 Score=95.59 Aligned_cols=163 Identities=20% Similarity=0.271 Sum_probs=107.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec--CCCCCceeeec-CcceEEeec----CccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KRSAGKQLSFQ-DKAYTVEEL----TEDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s--~~~~g~~~~~~-~~~~~v~~~----~~~~~~~~DvVf~a~~~ 111 (376)
|.||+|+|. |.+|..|+-.++.|+ .++|..+... +.+.|-..... +....-+.+ ...++.+.|+||.++..
T Consensus 4 k~kvaiigs-gni~tdlm~k~lr~g-~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa 81 (310)
T COG4569 4 KRKVAIIGS-GNIGTDLMIKILRHG-QHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSA 81 (310)
T ss_pred cceEEEEcc-CcccHHHHHHHHhcC-CcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEecccc
Confidence 689999996 999999998777774 3567766553 33443211110 111111111 12245688999999999
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcE
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTR 191 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~ 191 (376)
++..+.++++.++|++.|||+++. --||++|-+|-++-... .+.++|.|.|..+..+..+...+.+-. ..+
T Consensus 82 ~~h~~~a~~~ae~gi~~idltpaa----igp~vvp~~n~~eh~~a----~nvnmvtcggqatipiv~avsrvv~v~-yae 152 (310)
T COG4569 82 GAHVKNAAALAEAGIRLIDLTPAA----IGPYVVPVVNLEEHVDA----LNVNMVTCGGQATIPIVAAVSRVVRVH-YAE 152 (310)
T ss_pred chhhcchHhHHhcCCceeecchhc----cCCeeccccchHHhcCC----CCcceEeecCcccchhhhhhhhheehh-HHH
Confidence 999999999999999999999874 56999999997654421 267899999988888877766654311 112
Q ss_pred EEEEEEccccccC-hHhHHHHH
Q 017153 192 MVVSTYQAASGAG-AAAMEELE 212 (376)
Q Consensus 192 v~v~t~~gvSGaG-r~~~~~l~ 212 (376)
++.+..+-..|-| |.-+||+.
T Consensus 153 ivasias~sagpgtranideft 174 (310)
T COG4569 153 IVASIASKSAGPGTRANIDEFT 174 (310)
T ss_pred HHHHHhhccCCCCcccchHhhh
Confidence 3222223334555 44566653
No 49
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.40 E-value=5.6e-07 Score=76.25 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=66.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCceeee----cCcceEEeecCc-cCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF----QDKAYTVEELTE-DSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~~~~----~~~~~~v~~~~~-~~~~~~DvVf~a~~~ 111 (376)
|||+|+|++|..|+.+++.+.++ +++++++...++. .|+.+.. ....+.+.. +. +.+..+|++++++-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~-~l~~~~~~~DVvIDfT~p 77 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTD-DLEELLEEADVVIDFTNP 77 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS--HHHHTTH-SEEEEES-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEecCCcccccchhhhhhCcCCcccccch-hHHHhcccCCEEEEcCCh
Confidence 68999999999999999999998 9999998766554 4555432 111223321 22 224569999999988
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
....++++.+++.|+.+|--+.-|
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred HHhHHHHHHHHhCCCCEEEECCCC
Confidence 889999999999999988766544
No 50
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.24 E-value=1.6e-05 Score=75.79 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
+|||+|+|++|.+|+.+++.+.++ |+++++++.+++...... ....++... .+.+. +.++|+|+.+++.....++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~~~~~~-~~~~~i~~~-~dl~~ll~~~DvVid~t~p~~~~~~ 76 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPGSPLVG-QGALGVAIT-DDLEAVLADADVLIDFTTPEATLEN 76 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccc-cCCCCcccc-CCHHHhccCCCEEEECCCHHHHHHH
Confidence 389999999999999999999877 889999887654321110 010111111 11222 3579999999998888999
Q ss_pred HHHHHhCCCeEEEcCC
Q 017153 118 GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~ 133 (376)
+..++++|+.||.-+-
T Consensus 77 ~~~al~~G~~vvigtt 92 (257)
T PRK00048 77 LEFALEHGKPLVIGTT 92 (257)
T ss_pred HHHHHHcCCCEEEECC
Confidence 9999999999985443
No 51
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.23 E-value=2.8e-06 Score=83.10 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEee-cCc-cCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~-~~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
++||+|+|. |.+|+..++.+.++ |+++++++.+++..++ .. ....+.. .+. +...++|+|+.|+|+....+
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~-~~---~~~~v~~~~d~~e~l~~iDVViIctPs~th~~ 75 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQ--PDMELVGVFSRRGAET-LD---TETPVYAVADDEKHLDDVDVLILCMGSATDIP 75 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhC--CCcEEEEEEcCCcHHH-Hh---hcCCccccCCHHHhccCCCEEEEcCCCccCHH
Confidence 699999998 99999999999887 9999999887664221 11 1112221 122 22368999999999999999
Q ss_pred hHHHHHhCCCeEEEc
Q 017153 117 FGPIAVEKGSIVVDN 131 (376)
Q Consensus 117 ~~~~~~~~G~~VIDl 131 (376)
.+.+++++|.-|||.
T Consensus 76 ~~~~~L~aG~NVV~s 90 (324)
T TIGR01921 76 EQAPYFAQFANTVDS 90 (324)
T ss_pred HHHHHHHcCCCEEEC
Confidence 999999999999986
No 52
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.10 E-value=2.2e-06 Score=73.05 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=57.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
.+||+|||+ |.+|..|.+.|.+.+ .++..+.+++....... .......+..+ .+.+..+|++|+|+|.+.-.+.
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag---~~v~~v~srs~~sa~~a~~~~~~~~~~~~-~~~~~~aDlv~iavpDdaI~~v 84 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAG---HEVVGVYSRSPASAERAAAFIGAGAILDL-EEILRDADLVFIAVPDDAIAEV 84 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTT---SEEEEESSCHH-HHHHHHC--TT-----T-TGGGCC-SEEEE-S-CCHHHHH
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCC---CeEEEEEeCCccccccccccccccccccc-ccccccCCEEEEEechHHHHHH
Confidence 699999999 999999999999864 47777877653222111 11111222221 2335789999999999999999
Q ss_pred HHHHHhC-----CCeEEEcCCCC
Q 017153 118 GPIAVEK-----GSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~-----G~~VIDlS~~~ 135 (376)
++.+... |..|+.+|+.+
T Consensus 85 a~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 85 AEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp HHHHHCC--S-TT-EEEES-SS-
T ss_pred HHHHHHhccCCCCcEEEECCCCC
Confidence 9988765 77899999886
No 53
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.06 E-value=7.3e-06 Score=78.66 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=64.4
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS 114 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s 114 (376)
|+++||||+|. |.+|+.+++.|... .+.++++++.+++..- +.+.......... .+.++ +.++|+|+.|+|+...
T Consensus 4 m~~irIGIIG~-G~IG~~~a~~L~~~-~~~~el~aV~dr~~~~a~~~a~~~g~~~~~-~~~eell~~~D~Vvi~tp~~~h 80 (271)
T PRK13302 4 RPELRVAIAGL-GAIGKAIAQALDRG-LPGLTLSAVAVRDPQRHADFIWGLRRPPPV-VPLDQLATHADIVVEAAPASVL 80 (271)
T ss_pred CCeeEEEEECc-cHHHHHHHHHHHhc-CCCeEEEEEECCCHHHHHHHHHhcCCCccc-CCHHHHhcCCCEEEECCCcHHH
Confidence 44699999998 99999999988762 2788998887654211 1111100000111 12222 3678999999999999
Q ss_pred hhhHHHHHhCCCeEEEcC
Q 017153 115 KKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDlS 132 (376)
.++...++++|..||..|
T Consensus 81 ~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 81 RAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred HHHHHHHHHcCCcEEEec
Confidence 999999999999888765
No 54
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.97 E-value=2e-05 Score=75.42 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=64.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEeecCccCC-CCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTEDSF-DGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~~~ 117 (376)
|||||+|+ |.+|+.+++.|.+. |.++++++..+......... ......+.. +.+++ .++|+|+.|+|+....++
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHD--PDLRVDWVIVPEHSIDAVRRALGEAVRVVS-SVDALPQRPDLVVECAGHAALKEH 77 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhC--CCceEEEEEEcCCCHHHHhhhhccCCeeeC-CHHHhccCCCEEEECCCHHHHHHH
Confidence 79999999 99999999999887 88999887643222111110 001122221 12223 468999999999999999
Q ss_pred HHHHHhCCCeEEEcCC
Q 017153 118 GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~ 133 (376)
+.+++++|+.|+..|.
T Consensus 78 ~~~aL~aGk~Vvi~s~ 93 (265)
T PRK13303 78 VVPILKAGIDCAVISV 93 (265)
T ss_pred HHHHHHcCCCEEEeCh
Confidence 9999999999997664
No 55
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.97 E-value=2.8e-05 Score=74.43 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=67.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCceeee--c--CcceEEeecCccCC-CCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF--Q--DKAYTVEELTEDSF-DGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~~~~--~--~~~~~v~~~~~~~~-~~~DvVf~a~~~ 111 (376)
|||+|+|++|.+|+.+++.+.++ |.++++++.++.. .++.... + ...+.+.. +.+.+ .++|+|++|+++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~-d~~~l~~~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTD-DLEAVETDPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeC-CHHHhcCCCCEEEECCCh
Confidence 79999998899999999999887 9999999876432 1222111 0 01122221 22222 468999999999
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
....+++..++++|+.||.-+..|
T Consensus 79 ~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC
Confidence 999999999999999999766544
No 56
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=97.95 E-value=5.5e-05 Score=67.48 Aligned_cols=87 Identities=23% Similarity=0.241 Sum_probs=54.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-------ccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-------EDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-------~~~~~~~DvVf~a~~~ 111 (376)
.+.+.|+||||.+|+.|++.+++. |-+.-+.+..++..-.+- .++.+.....| ..++.+.||.|||+++
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~--~~FSKV~~i~RR~~~d~a--t~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgT 93 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEA--PQFSKVYAILRRELPDPA--TDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGT 93 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhc--ccceeEEEEEeccCCCcc--ccceeeeEEechHHHHHHHhhhcCCceEEEeecc
Confidence 478999999999999999999988 877666544444211111 11111111112 2345799999999987
Q ss_pred chh---------------hhhHHHHHhCCCeEE
Q 017153 112 SIS---------------KKFGPIAVEKGSIVV 129 (376)
Q Consensus 112 ~~s---------------~~~~~~~~~~G~~VI 129 (376)
+-. ...++.+.+.||+-+
T Consensus 94 TRgkaGadgfykvDhDyvl~~A~~AKe~Gck~f 126 (238)
T KOG4039|consen 94 TRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTF 126 (238)
T ss_pred cccccccCceEeechHHHHHHHHHHHhCCCeEE
Confidence 544 233444556899833
No 57
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.86 E-value=0.00011 Score=69.54 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=67.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCceeee----cCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF----QDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~~~~----~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
+|||+|+||+|..|+++++++.+. |++++++...+.. .|+.... ....+.+.+.......++|++++-+-.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCc
Confidence 599999999999999999999988 8999987654432 1221111 111223322111223688999999988
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
..+.++++.+++.|...|--+--|
T Consensus 80 ~~~~~~l~~~~~~~~~lVIGTTGf 103 (266)
T COG0289 80 EATLENLEFALEHGKPLVIGTTGF 103 (266)
T ss_pred hhhHHHHHHHHHcCCCeEEECCCC
Confidence 999999999999998866665555
No 58
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.77 E-value=5.5e-05 Score=71.93 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC--CCCcEEEEcCCCchhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSISK 115 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~--~~~DvVf~a~~~~~s~ 115 (376)
|++||||+|. |.+|+.+.+.|.....+.++++++..+.. .+....... ..+.. +.+++ .+.|+|+.|.++..-+
T Consensus 1 ~~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~-~~~~~~~~~-~~~~~-~l~~ll~~~~DlVVE~A~~~av~ 76 (267)
T PRK13301 1 MTHRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA-DLPPALAGR-VALLD-GLPGLLAWRPDLVVEAAGQQAIA 76 (267)
T ss_pred CceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH-HHHHHhhcc-CcccC-CHHHHhhcCCCEEEECCCHHHHH
Confidence 3689999999 99999999988764335689988865432 111111111 12211 23333 5799999999999999
Q ss_pred hhHHHHHhCCCeEEEcC-CCC
Q 017153 116 KFGPIAVEKGSIVVDNS-SAF 135 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS-~~~ 135 (376)
++.++.+++|+-++-+| ++|
T Consensus 77 e~~~~iL~~g~dlvv~SvGAL 97 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGAL 97 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHh
Confidence 99999999999888788 555
No 59
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.72 E-value=6.6e-05 Score=71.82 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=62.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
|||+|+|+ |.+|+.+++.|.+.+ +.++++++.+++.. .+.+... ....... +.++ +.++|+|+.|+++....++
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~-~~~elv~v~d~~~~~a~~~a~~-~~~~~~~-~~~ell~~~DvVvi~a~~~~~~~~ 77 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGR-INAELYAFYDRNLEKAENLASK-TGAKACL-SIDELVEDVDLVVECASVNAVEEV 77 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCC-CCeEEEEEECCCHHHHHHHHHh-cCCeeEC-CHHHHhcCCCEEEEcCChHHHHHH
Confidence 79999998 999999999888652 26888887765421 0111000 0111211 2222 3689999999999999999
Q ss_pred HHHHHhCCCeEEEcCC
Q 017153 118 GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~ 133 (376)
...++++|+.|+..|.
T Consensus 78 ~~~al~~Gk~Vvv~s~ 93 (265)
T PRK13304 78 VPKSLENGKDVIIMSV 93 (265)
T ss_pred HHHHHHcCCCEEEEch
Confidence 9999999998887664
No 60
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.70 E-value=2.9e-05 Score=62.00 Aligned_cols=91 Identities=12% Similarity=0.222 Sum_probs=58.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecC-ccCCCCCcEEEEcCCCchhhhhH
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~-~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
||+|+|+ |..|..|++.|.+++++..++..+.+++... +.+.... ...+...+ .+.++++|+||+|.+.....+.+
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~advvilav~p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-GVQATADDNEEAAQEADVVILAVKPQQLPEVL 78 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-TTEEESEEHHHHHHHTSEEEE-S-GGGHHHHH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-ccccccCChHHhhccCCEEEEEECHHHHHHHH
Confidence 7999998 9999999999988754345666554443211 0111110 12222212 23346899999999999998888
Q ss_pred HHH--HhCCCeEEEcCC
Q 017153 119 PIA--VEKGSIVVDNSS 133 (376)
Q Consensus 119 ~~~--~~~G~~VIDlS~ 133 (376)
..+ ...+..+||..+
T Consensus 79 ~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 79 SEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHTTSEEEEEST
T ss_pred HHHhhccCCCEEEEeCC
Confidence 876 568899999875
No 61
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.62 E-value=0.00068 Score=60.97 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=44.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEE-----eecCc--cCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-----EELTE--DSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v-----~~~~~--~~~~~~DvVf~a~~~~ 112 (376)
|||||+||||.+|.++++....++| ++++++. +..|.-.. +.+.+ .+++. +++.+.|+||+|-+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH---eVTAivR--n~~K~~~~--~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH---EVTAIVR--NASKLAAR--QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC---eeEEEEe--ChHhcccc--ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 6899999999999999998888877 7777763 22222111 11222 22222 4567999999998776
No 62
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.60 E-value=0.00016 Score=64.20 Aligned_cols=87 Identities=28% Similarity=0.298 Sum_probs=55.0
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---cc----CCCCCcEEEEcCCCc--
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAGGS-- 112 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~~~-- 112 (376)
|.|+||||++|+.+++.|.+++ .++.+++.+.. +. .. ...+.+...| ++ .+.++|+||+|.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~~~--~~-~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRSPS--KA-ED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGG--GH-HH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecCch--hc-cc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 7899999999999999999873 68887764322 11 11 2234443333 22 246999999999842
Q ss_pred ---hhhhhHHHHHhCCC-eEEEcCCCC
Q 017153 113 ---ISKKFGPIAVEKGS-IVVDNSSAF 135 (376)
Q Consensus 113 ---~s~~~~~~~~~~G~-~VIDlS~~~ 135 (376)
..+...+.+.+.|+ ++|-+|+..
T Consensus 74 ~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 74 DVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred cccccccccccccccccccceeeeccc
Confidence 23334444456776 466566554
No 63
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.59 E-value=6.6e-05 Score=62.23 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=61.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-C--CCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~s~ 115 (376)
|||||+|+ |..|+..++.+..+ .|.++++++.+++... +..... ..+.... +.++ + .++|+|+.|+|.....
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~-~~~~~v~~v~d~~~~~~~~~~~~-~~~~~~~-~~~~ll~~~~~D~V~I~tp~~~h~ 76 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRS-SPDFEVVAVCDPDPERAEAFAEK-YGIPVYT-DLEELLADEDVDAVIIATPPSSHA 76 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHT-TTTEEEEEEECSSHHHHHHHHHH-TTSEEES-SHHHHHHHTTESEEEEESSGGGHH
T ss_pred CEEEEECC-cHHHHHHHHHHHhc-CCCcEEEEEEeCCHHHHHHHHHH-hcccchh-HHHHHHHhhcCCEEEEecCCcchH
Confidence 58999999 99999999877654 3789999988765321 111110 1122221 2222 2 3799999999999999
Q ss_pred hhHHHHHhCCCeEE
Q 017153 116 KFGPIAVEKGSIVV 129 (376)
Q Consensus 116 ~~~~~~~~~G~~VI 129 (376)
+++.+++++|..|+
T Consensus 77 ~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 77 EIAKKALEAGKHVL 90 (120)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCEEE
Confidence 99999999999876
No 64
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.49 E-value=0.00024 Score=65.23 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=60.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEeecC-ccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~~~-~~~~~~~DvVf~a~~~~~s~~ 116 (376)
+|+++|+|+ |.+|..|.+.|...+ .|+... +++...+.-.. ......+.... ++....+||||++.|-.....
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag---~eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~ 75 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAG---HEVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD 75 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCC---CeEEEe-cCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh
Confidence 378888886 999999999998754 366543 33333211110 00111233323 233467999999999999888
Q ss_pred hHHHHHh--CCCeEEEcCCCC
Q 017153 117 FGPIAVE--KGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~~--~G~~VIDlS~~~ 135 (376)
..+.+.+ .|..|||.+.+.
T Consensus 76 v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 76 VLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred HHHHHHHHhCCeEEEecCCCc
Confidence 8887764 478999998864
No 65
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.42 E-value=0.00049 Score=67.01 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=52.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ec-Ccc----CCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--EL-TED----SFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~-~~~----~~~~~DvVf~a~~~~ 112 (376)
|||.|.||||++|+.|++.|.+++| ++.++.........+.. ..+.+. ++ +++ .+.++|+||.|.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~---~V~~l~R~~~~~~~l~~--~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY---QVRCLVRNLRKASFLKE--WGAELVYGDLSLPETLPPSFKGVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC---eEEEEEcChHHhhhHhh--cCCEEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence 5899999999999999999988743 67666532111111111 112222 22 222 247899999986542
Q ss_pred hh-------------hhhHHHHHhCCCe-EEEcCC
Q 017153 113 IS-------------KKFGPIAVEKGSI-VVDNSS 133 (376)
Q Consensus 113 ~s-------------~~~~~~~~~~G~~-VIDlS~ 133 (376)
.. ....+.+.++|++ +|-+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 76 PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 21 2233445567874 665665
No 66
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.41 E-value=0.00069 Score=65.09 Aligned_cols=157 Identities=11% Similarity=0.196 Sum_probs=90.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCc--eeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~--~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s 114 (376)
.|||+|+|+ |..|..+++.|.+++ .+..++.. .+++...+ .+... ....... +.. ...++|+||+|++....
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v-~~r~~~~~~~~l~~~-~g~~~~~-~~~e~~~~aDvVilav~p~~~ 78 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITV-SNRSNETRLQELHQK-YGVKGTH-NKKELLTDANILFLAMKPKDV 78 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEE-ECCCCHHHHHHHHHh-cCceEeC-CHHHHHhcCCEEEEEeCHHHH
Confidence 479999997 999999999988763 12234443 33322111 11110 0122221 222 24689999999999888
Q ss_pred hhhHHHHH---hCCCeEEEcCCCCCCC-------CCCc--EEeeccCHHhhcCcccCCCCCc-EEEcCCchHHHHHHHHh
Q 017153 115 KKFGPIAV---EKGSIVVDNSSAFRMV-------ENVP--LVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAAT 181 (376)
Q Consensus 115 ~~~~~~~~---~~G~~VIDlS~~~R~~-------~~~~--~~lpevN~~~i~~~~~~~~~~~-iVa~PgC~~ta~~l~L~ 181 (376)
.+.+..+. ..+..|||+.+....+ .+.+ ..+|-.....-. +.. ++.+..|.... .-.+.
T Consensus 79 ~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~-------~~t~~~~~~~~~~~~-~~~v~ 150 (279)
T PRK07679 79 AEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILK-------SATAISPSKHATAEH-IQTAK 150 (279)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhc-------ccEEEeeCCCCCHHH-HHHHH
Confidence 88777664 3567899986665432 1112 334433322222 233 33444554443 34578
Q ss_pred HHHHhCCCcEEEE------EEEccccccChHhHH
Q 017153 182 PLHRRAKVTRMVV------STYQAASGAGAAAME 209 (376)
Q Consensus 182 pL~~~~~i~~v~v------~t~~gvSGaGr~~~~ 209 (376)
+|++.+|- ++. ++..+.+|+|-.-.-
T Consensus 151 ~l~~~~G~--~~~v~e~~~~~~~a~~Gsgpa~~~ 182 (279)
T PRK07679 151 ALFETIGL--VSVVEEEDMHAVTALSGSGPAYIY 182 (279)
T ss_pred HHHHhCCc--EEEeCHHHhhhHHHhhcCHHHHHH
Confidence 88888773 233 667888998866433
No 67
>PRK11579 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.0005 Score=68.06 Aligned_cols=85 Identities=18% Similarity=0.270 Sum_probs=61.0
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~s 114 (376)
++||||||+ |.+|+. .++.+... |.++++++.+++.. + .........+.. +.++ + .++|+|+.|+|+...
T Consensus 4 ~irvgiiG~-G~i~~~~~~~~~~~~--~~~~l~av~d~~~~-~-~~~~~~~~~~~~-~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 4 KIRVGLIGY-GYASKTFHAPLIAGT--PGLELAAVSSSDAT-K-VKADWPTVTVVS-EPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred cceEEEECC-CHHHHHHHHHHHhhC--CCCEEEEEECCCHH-H-HHhhCCCCceeC-CHHHHhcCCCCCEEEEcCCcHHH
Confidence 589999998 999985 56777766 88999999875421 1 111111122221 2222 2 479999999999999
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+++.+++++|+.|+
T Consensus 78 ~~~~~~al~aGkhVl 92 (346)
T PRK11579 78 FPLAKAALEAGKHVV 92 (346)
T ss_pred HHHHHHHHHCCCeEE
Confidence 999999999999987
No 68
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.35 E-value=0.00036 Score=64.52 Aligned_cols=143 Identities=20% Similarity=0.239 Sum_probs=87.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCC-CCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~~~ 117 (376)
++|+|+|. |.+|..+++++.+.. -.++++++.+++..- +.+......-.+. +.+++ .++|+++.|.++...+++
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~-~~~e~v~v~D~~~ek~~~~~~~~~~~~~s--~ide~~~~~DlvVEaAS~~Av~e~ 76 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGR-VDFELVAVYDRDEEKAKELEASVGRRCVS--DIDELIAEVDLVVEAASPEAVREY 76 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCC-cceeEEEEecCCHHHHHHHHhhcCCCccc--cHHHHhhccceeeeeCCHHHHHHH
Confidence 58999999 999999999998641 358888887654221 1111100011112 23333 789999999999999999
Q ss_pred HHHHHhCCCeEEEcCC-CCCCCCCCcEEeeccC---HHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 118 GPIAVEKGSIVVDNSS-AFRMVENVPLVIPEVN---PEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~-~~R~~~~~~~~lpevN---~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
+++.+++|+-+|-+|- +| .| |++- ++..+ ..++++--.+| +.+-+=+|+.+ +.++|+.|.
T Consensus 77 ~~~~L~~g~d~iV~SVGAL--ad------~~l~erl~~lak-----~~~~rv~~pSG--AiGGlD~l~aa-r~g~i~~V~ 140 (255)
T COG1712 77 VPKILKAGIDVIVMSVGAL--AD------EGLRERLRELAK-----CGGARVYLPSG--AIGGLDALAAA-RVGGIEEVV 140 (255)
T ss_pred hHHHHhcCCCEEEEechhc--cC------hHHHHHHHHHHh-----cCCcEEEecCc--cchhHHHHHHh-hcCCeeEEE
Confidence 9999999987666553 33 11 2221 12222 11344443333 33434445443 337899999
Q ss_pred EEEEccccc
Q 017153 194 VSTYQAASG 202 (376)
Q Consensus 194 v~t~~gvSG 202 (376)
.+|.-....
T Consensus 141 lttrKpp~~ 149 (255)
T COG1712 141 LTTRKPPAE 149 (255)
T ss_pred EEeecChHH
Confidence 988755553
No 69
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.35 E-value=0.00044 Score=64.76 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC--ceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g--~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~ 115 (376)
++||+|+|+ |.+|..+++.|..+++...+...+.+++... +.+... ..+.... +.+ .+.++|+||.|+|.....
T Consensus 4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~DiViiavp~~~~~ 80 (245)
T PRK07634 4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR-YNVSTTT-DWKQHVTSVDTIVLAMPPSAHE 80 (245)
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH-cCcEEeC-ChHHHHhcCCEEEEecCHHHHH
Confidence 589999997 9999999998877643344422233332211 111111 0122221 222 246899999999999888
Q ss_pred hhHHHHHh--CCCeEEEcCCCCC
Q 017153 116 KFGPIAVE--KGSIVVDNSSAFR 136 (376)
Q Consensus 116 ~~~~~~~~--~G~~VIDlS~~~R 136 (376)
+....+.+ .+..||+.++.+-
T Consensus 81 ~v~~~l~~~~~~~~vis~~~gi~ 103 (245)
T PRK07634 81 ELLAELSPLLSNQLVVTVAAGIG 103 (245)
T ss_pred HHHHHHHhhccCCEEEEECCCCC
Confidence 87776542 3567898888774
No 70
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.34 E-value=0.00085 Score=74.95 Aligned_cols=91 Identities=18% Similarity=0.121 Sum_probs=64.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeE------------EEEEecCCCC-CceeeecCcc---eEEeecCccC----
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRS------------IKMLASKRSA-GKQLSFQDKA---YTVEELTEDS---- 98 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~------------l~~v~s~~~~-g~~~~~~~~~---~~v~~~~~~~---- 98 (376)
+.||+|+|| |++|+..++.|.++ |+.+ ++.+++.... .+.+...... +.+.-.+.++
T Consensus 569 ~~rIlVLGA-G~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 569 SQNVLILGA-GRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred CCcEEEECC-CHHHHHHHHHHHhC--cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 579999999 99999999999887 7766 5566664321 1111111111 2221112222
Q ss_pred CCCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcC
Q 017153 99 FDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
+.++|+|+.|+|.....+.+..++++|+.++|.+
T Consensus 646 v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 2679999999999999999999999999999987
No 71
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.29 E-value=0.00071 Score=67.76 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=59.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
+.||+|+|.+|.+|+.|.+.|.+. ...++..+. +...+ ... ..+.+.++|+||+|+|-....++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~--~~~~V~g~D-~~d~~-----------~~~-~~~~v~~aDlVilavPv~~~~~~l 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR--MQLEVIGHD-PADPG-----------SLD-PATLLQRADVLIFSAPIRHTAALI 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc--CCCEEEEEc-CCccc-----------cCC-HHHHhcCCCEEEEeCCHHHHHHHH
Confidence 479999999999999999999865 245655432 21000 000 022357899999999999998888
Q ss_pred HHHH------hCCCeEEEcCCC
Q 017153 119 PIAV------EKGSIVVDNSSA 134 (376)
Q Consensus 119 ~~~~------~~G~~VIDlS~~ 134 (376)
+++. +.|+.|.|.+|-
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSv 90 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSI 90 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCC
Confidence 8775 468999999985
No 72
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00084 Score=67.39 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=64.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-cCcceEEeecC---c----cCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QDKAYTVEELT---E----DSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-~~~~~~v~~~~---~----~~~~~~DvVf~a~ 109 (376)
++||.|+|+ |.||+.++..|+.+ .+.++. +++++.. -..+.. ....+....+| . +.+.+.|+||.|+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~--~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQN--GDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhC--CCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 378999999 99999999999987 446665 4444311 112211 11122222222 2 1246779999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
|........+.+++.|+.++|.|-.
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccC
Confidence 9999999999999999999999865
No 73
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.21 E-value=0.0005 Score=68.17 Aligned_cols=91 Identities=20% Similarity=0.306 Sum_probs=58.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC------C-CCeEEEEEecCCC-----CCceeee------cCcceEEe-----ecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD------F-PYRSIKMLASKRS-----AGKQLSF------QDKAYTVE-----ELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~------~-p~~~l~~v~s~~~-----~g~~~~~------~~~~~~v~-----~~~ 95 (376)
++||+|+|. |.+|+.+++.|.++. + ..++++++++++. .|..... ....+... ..+
T Consensus 2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 589999998 999999999997651 0 2688988876421 1211100 00001000 012
Q ss_pred ccC-C--CCCcEEEEcCCCch-----hhhhHHHHHhCCCeEEE
Q 017153 96 EDS-F--DGVDIALFSAGGSI-----SKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 96 ~~~-~--~~~DvVf~a~~~~~-----s~~~~~~~~~~G~~VID 130 (376)
.++ + .++|+|+.|+|+.. +.++...++++|+.||-
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 222 2 36899999998643 47888889999999985
No 74
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.18 E-value=0.0008 Score=64.66 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=88.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCCc--eeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGK--QLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g~--~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~ 115 (376)
+||+|||+ |.+|..+++.|.+.++ +..++. +.+++ ..+ .+... ....... +.. ...++|+||+|++.....
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~-v~~r~-~~~~~~l~~~-~g~~~~~-~~~e~~~~aDiIiLavkP~~~~ 77 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQII-CSDLN-VSNLKNASDK-YGITITT-NNNEVANSADILILSIKPDLYS 77 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEE-EECCC-HHHHHHHHHh-cCcEEeC-CcHHHHhhCCEEEEEeChHHHH
Confidence 68999997 9999999999887654 223443 33332 111 11100 0122221 222 246899999999998888
Q ss_pred hhHHHHH---hCCCeEEEcCCCCCCCC-------C--CcEEeeccCHHhhcCcccCCCCCcE-EEcCCchHHHHHHHHhH
Q 017153 116 KFGPIAV---EKGSIVVDNSSAFRMVE-------N--VPLVIPEVNPEAMSGIKVGMGKGAL-IANPNCSTIICLMAATP 182 (376)
Q Consensus 116 ~~~~~~~---~~G~~VIDlS~~~R~~~-------~--~~~~lpevN~~~i~~~~~~~~~~~i-Va~PgC~~ta~~l~L~p 182 (376)
+..+.+. +.+..|||+-+...++. . +.=.+|-..-..-. +... ..++++...-.. .+.-
T Consensus 78 ~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~-------g~t~~~~~~~~~~~~~~-~v~~ 149 (272)
T PRK12491 78 SVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGE-------GMSALCFNEMVTEKDIK-EVLN 149 (272)
T ss_pred HHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcC-------ceEEEEeCCCCCHHHHH-HHHH
Confidence 8777664 35678999988876432 0 11245544432211 2233 334444433322 2444
Q ss_pred HHHhCCC----cEEEEEEEccccccChH
Q 017153 183 LHRRAKV----TRMVVSTYQAASGAGAA 206 (376)
Q Consensus 183 L~~~~~i----~~v~v~t~~gvSGaGr~ 206 (376)
|++..|- ++=.+++.+++||.|-.
T Consensus 150 lf~~~G~~~~~~E~~~d~~talsgsgPA 177 (272)
T PRK12491 150 IFNIFGQTEVVNEKLMDVVTSISGSSPA 177 (272)
T ss_pred HHHcCCCEEEEcHHHhhhHHHhccCcHH
Confidence 5555553 23357889999999844
No 75
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.15 E-value=0.0011 Score=67.87 Aligned_cols=90 Identities=21% Similarity=0.277 Sum_probs=59.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC-------CCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALF 107 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~-------~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~ 107 (376)
+++||||+|. |.+|+.+++.|.++. -..++++.+.+++.. +.-........+. .+.++ + .++|+|+.
T Consensus 2 ~~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~~~~~~~~~~~~~-~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 2 KPLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-KDRGVDLPGILLT-TDPEELVNDPDIDIVVE 78 (426)
T ss_pred CeEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-hccCCCCccccee-CCHHHHhhCCCCCEEEE
Confidence 3599999998 999999999987651 026788888765421 1100110111121 12222 2 36899999
Q ss_pred cCCC-chhhhhHHHHHhCCCeEEE
Q 017153 108 SAGG-SISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 108 a~~~-~~s~~~~~~~~~~G~~VID 130 (376)
|++. ..+.++..+++++|..||-
T Consensus 79 ~tg~~~~~~~~~~~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPARELILKALEAGKHVVT 102 (426)
T ss_pred CCCCchHHHHHHHHHHHCCCeEEE
Confidence 9865 5678888899999999984
No 76
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.14 E-value=0.00057 Score=66.82 Aligned_cols=88 Identities=13% Similarity=0.214 Sum_probs=61.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCC-ceeeecCcce-EEeecCccC-C--CCCcEEEEcCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAG-KQLSFQDKAY-TVEELTEDS-F--DGVDIALFSAGG 111 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g-~~~~~~~~~~-~v~~~~~~~-~--~~~DvVf~a~~~ 111 (376)
+++||||+|+.|+.+...+..+... +. ++++++.+++..- +.+.... .+ .... +.++ + .++|+|+.|+|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~--~~~~~~vav~d~~~~~a~~~a~~~-~~~~~~~-~~~~ll~~~~iD~V~Iatp~ 77 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL--GGGLELVAVVDRDPERAEAFAEEF-GIAKAYT-DLEELLADPDIDAVYIATPN 77 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhC--CCceEEEEEecCCHHHHHHHHHHc-CCCcccC-CHHHHhcCCCCCEEEEcCCC
Confidence 4699999999557777788888876 55 6888887654321 1111100 11 1111 2222 2 358999999999
Q ss_pred chhhhhHHHHHhCCCeEE
Q 017153 112 SISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VI 129 (376)
....+++.+++++|+.|+
T Consensus 78 ~~H~e~~~~AL~aGkhVl 95 (342)
T COG0673 78 ALHAELALAALEAGKHVL 95 (342)
T ss_pred hhhHHHHHHHHhcCCEEE
Confidence 999999999999999988
No 77
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.13 E-value=0.00067 Score=64.49 Aligned_cols=95 Identities=9% Similarity=0.166 Sum_probs=58.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
++||+|+|+ |.+|..+++.|.+.+++..++. +.+++... +.+.... .+.+.....+.+.++|+||+|++.....+.
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~-v~~r~~~~~~~~~~~~-g~~~~~~~~~~~~~advVil~v~~~~~~~v 78 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDII-VSDPSPEKRAALAEEY-GVRAATDNQEAAQEADVVVLAVKPQVMEEV 78 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEE-EEcCCHHHHHHHHHhc-CCeecCChHHHHhcCCEEEEEcCHHHHHHH
Confidence 479999998 9999999998887633223443 34433211 1111100 122221111224689999999999988888
Q ss_pred HHHHHhC-CCeEEEcCCCCC
Q 017153 118 GPIAVEK-GSIVVDNSSAFR 136 (376)
Q Consensus 118 ~~~~~~~-G~~VIDlS~~~R 136 (376)
.+.+... +..||++++...
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~ 98 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVT 98 (267)
T ss_pred HHHHHhhcCCEEEEecCCCC
Confidence 7776543 567888877653
No 78
>PLN02256 arogenate dehydrogenase
Probab=97.12 E-value=0.0023 Score=62.49 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=57.2
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C-CCCcEEEEcCCCchhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSISK 115 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~-~~~DvVf~a~~~~~s~ 115 (376)
++++|+|+|+ |.+|+.+.+.|.+.+ .++.++..+. . ...... ..+... .+.++ . .++|+||+|+|.....
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G---~~V~~~d~~~-~-~~~a~~-~gv~~~-~~~~e~~~~~aDvVilavp~~~~~ 106 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQG---HTVLATSRSD-Y-SDIAAE-LGVSFF-RDPDDFCEEHPDVVLLCTSILSTE 106 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCC---CEEEEEECcc-H-HHHHHH-cCCeee-CCHHHHhhCCCCEEEEecCHHHHH
Confidence 3689999997 999999999998752 4666544322 1 111100 011111 12222 2 3689999999998888
Q ss_pred hhHHHH----HhCCCeEEEcCC
Q 017153 116 KFGPIA----VEKGSIVVDNSS 133 (376)
Q Consensus 116 ~~~~~~----~~~G~~VIDlS~ 133 (376)
+...++ ...|+.|+|.++
T Consensus 107 ~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 107 AVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred HHHHhhhhhccCCCCEEEecCC
Confidence 877765 246889999998
No 79
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.11 E-value=0.00088 Score=60.27 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=67.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec--CCCCCceeeecCcceEEeecC-ccC-C--CCCcEEEEcCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KRSAGKQLSFQDKAYTVEELT-EDS-F--DGVDIALFSAGG 111 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s--~~~~g~~~~~~~~~~~v~~~~-~~~-~--~~~DvVf~a~~~ 111 (376)
++.++.|+|+ |..|+.|+..--. +...++++.+.+ ++..|+.+ .++.+..++ .+. + .++|++++|.|.
T Consensus 83 ~~tnviiVG~-GnlG~All~Y~f~-~~~~~~iv~~FDv~~~~VG~~~----~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 83 KTTNVIIVGV-GNLGRALLNYNFS-KKNGMKIVAAFDVDPDKVGTKI----GDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred cceeEEEEcc-ChHHHHHhcCcch-hhcCceEEEEecCCHHHhCccc----CCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 4689999999 9999998763321 115688887653 33455544 246777655 222 2 389999999999
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAFRM 137 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~R~ 137 (376)
..+.+.+..+.++|++-|=+=++-|+
T Consensus 157 ~~AQ~vad~Lv~aGVkGIlNFtPv~l 182 (211)
T COG2344 157 EHAQEVADRLVKAGVKGILNFTPVRL 182 (211)
T ss_pred HHHHHHHHHHHHcCCceEEeccceEe
Confidence 99999999999999998855444443
No 80
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.11 E-value=0.00033 Score=58.28 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=52.9
Q ss_pred CcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCCc--eeeecCcceEEeecCccC-CC--CCcEEEEcCCCchhhhhHH
Q 017153 46 GVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDS-FD--GVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 46 GaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g~--~~~~~~~~~~v~~~~~~~-~~--~~DvVf~a~~~~~s~~~~~ 119 (376)
|+ |.+|+.++++|.++.- ..++++.+.+++ ... ..........+. .+.++ +. +.|+|++|++.....++.+
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dvvVE~t~~~~~~~~~~ 77 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFT-TDLEELIDDPDIDVVVECTSSEAVAEYYE 77 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEE-SSHHHHHTHTT-SEEEE-SSCHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhccccccc-CCHHHHhcCcCCCEEEECCCchHHHHHHH
Confidence 44 9999999999988611 178998888765 100 000000111111 12222 23 7999999999999999999
Q ss_pred HHHhCCCeEEEcC
Q 017153 120 IAVEKGSIVVDNS 132 (376)
Q Consensus 120 ~~~~~G~~VIDlS 132 (376)
.++++|+-||-.|
T Consensus 78 ~~L~~G~~VVt~n 90 (117)
T PF03447_consen 78 KALERGKHVVTAN 90 (117)
T ss_dssp HHHHTTCEEEES-
T ss_pred HHHHCCCeEEEEC
Confidence 9999999999654
No 81
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.11 E-value=0.00042 Score=64.23 Aligned_cols=89 Identities=22% Similarity=0.230 Sum_probs=53.6
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--CceeeecCcceEEeecC-cc----CCCCCcEEEEcCCCc--
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSFQDKAYTVEELT-ED----SFDGVDIALFSAGGS-- 112 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~~~~~~~~v~~~~-~~----~~~~~DvVf~a~~~~-- 112 (376)
|+|+||||.+|+.+++.|... .+++.+++..... .+.+...+..+...+.+ ++ .+.++|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~---~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~ 77 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA---GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHP 77 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCC
T ss_pred CEEECCccHHHHHHHHHHHhC---CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchh
Confidence 789999999999999999884 5678777643311 11111112122111222 22 257999999999943
Q ss_pred ----hhhhhHHHHHhCCCeEEEcCC
Q 017153 113 ----ISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 113 ----~s~~~~~~~~~~G~~VIDlS~ 133 (376)
....+...+.++|++-+-.|+
T Consensus 78 ~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 78 SELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred hhhhhhhhHHHhhhccccceEEEEE
Confidence 344455566678888553443
No 82
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.10 E-value=0.0011 Score=66.61 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=55.7
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCCCC-ceeee--cCcceEEeecC---ccC----CCCCcEEEEcCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAG-KQLSF--QDKAYTVEELT---EDS----FDGVDIALFSAG 110 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~~g-~~~~~--~~~~~~v~~~~---~~~----~~~~DvVf~a~~ 110 (376)
|.|+|+ |++|+.+++.|.++ +.. +++ +++++... +.+.. ....+.....| .+. +.++|+|+.|+|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~--~~~~~v~-va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~g 76 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARR--GPFEEVT-VADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAG 76 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCT--TCE-EEE-EEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred CEEEcC-cHHHHHHHHHHhcC--CCCCcEE-EEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCc
Confidence 689999 99999999999987 656 544 44443211 11111 11233333333 222 378999999999
Q ss_pred CchhhhhHHHHHhCCCeEEEcCC
Q 017153 111 GSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
.......++.+++.|+..||.|.
T Consensus 77 p~~~~~v~~~~i~~g~~yvD~~~ 99 (386)
T PF03435_consen 77 PFFGEPVARACIEAGVHYVDTSY 99 (386)
T ss_dssp GGGHHHHHHHHHHHT-EEEESS-
T ss_pred cchhHHHHHHHHHhCCCeeccch
Confidence 99898999999999999999443
No 83
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.05 E-value=0.0036 Score=60.32 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=70.2
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-e-cCcceEEee-cCccC-C-----CCCc-EEE
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-F-QDKAYTVEE-LTEDS-F-----DGVD-IAL 106 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~-~~~~~~v~~-~~~~~-~-----~~~D-vVf 106 (376)
.+++||.|+|++|..|+++.+.+.+ ++++|+........|..+. . .+.++.+.. -+.+. + ...| |++
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~---~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvI 85 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS---AGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVV 85 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc---CCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEE
Confidence 3469999999999999999999987 6899998776665554433 1 122344431 12111 2 2578 899
Q ss_pred EcCCCchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 107 FSAGGSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+-+-.....++++.+.+.|+.+|--+.-|
T Consensus 86 DFT~P~a~~~~~~~~~~~g~~~VvGTTG~ 114 (286)
T PLN02775 86 DYTLPDAVNDNAELYCKNGLPFVMGTTGG 114 (286)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 99999999999999999999988766655
No 84
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.05 E-value=0.0015 Score=60.53 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=59.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--------cCcceEEeecC-ccCCCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--------QDKAYTVEELT-EDSFDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--------~~~~~~v~~~~-~~~~~~~DvVf~a~ 109 (376)
|||+|+|++|.+|..+.+.|.+.+| ++... +++.. -+.+.. .+....+...+ .+...++|+||+|+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~---~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN---KIIIG-SRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC---EEEEE-EcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEEC
Confidence 5899999779999999999988643 55433 33221 000000 00011122112 23356899999999
Q ss_pred CCchhhhhHHHHHh--CCCeEEEcCCCCCC
Q 017153 110 GGSISKKFGPIAVE--KGSIVVDNSSAFRM 137 (376)
Q Consensus 110 ~~~~s~~~~~~~~~--~G~~VIDlS~~~R~ 137 (376)
+.....+..+.+.. .+..|||++..+..
T Consensus 77 p~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 77 PWDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 99888777666542 35679999988754
No 85
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.05 E-value=0.001 Score=60.87 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=49.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
|||+|||++|..|+-+.+.+.+.++ ++. +.++|+||+|+|-....++.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~---~v~----------------------------~~~~DlVilavPv~~~~~~i~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL---GVY----------------------------IKKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC---EEE----------------------------ECCCCEEEEeCCHHHHHHHHH
Confidence 5899999999999999999987543 221 247899999999999988887
Q ss_pred HHHhCCCeEEEcCCC
Q 017153 120 IAVEKGSIVVDNSSA 134 (376)
Q Consensus 120 ~~~~~G~~VIDlS~~ 134 (376)
++. ..++|.+|-
T Consensus 50 ~~~---~~v~Dv~Sv 61 (197)
T PRK06444 50 SYD---NNFVEISSV 61 (197)
T ss_pred HhC---CeEEecccc
Confidence 764 358899885
No 86
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0015 Score=63.09 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEee-cC--ccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LT--EDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~-~~--~~~~~~~DvVf~a~~~~~s~ 115 (376)
+++|+|+|. |.+|+.+.+.|.++++ ...+ +....+.+........++..+. .+ .+...++|+||.|+|-..+.
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~-~v~i--~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~ 78 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGL-VVRI--IGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATE 78 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCC-eEEE--EeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHH
Confidence 589999996 9999999999998643 2222 2222222111110000111110 01 22346789999999999999
Q ss_pred hhHHHHH---hCCCeEEEcCCCC
Q 017153 116 KFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~---~~G~~VIDlS~~~ 135 (376)
++..++. +.|+.|.|.++.=
T Consensus 79 ~~l~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 79 EVLKELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred HHHHHhcccCCCCCEEEeccccc
Confidence 9888876 5799999999863
No 87
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.04 E-value=0.002 Score=61.96 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=86.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCc--eeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~--~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~ 115 (376)
+||+|+|+ |.+|..+++.|.+.+ .+..++..+.. +...+ .+........+.. +.. ...++|+||+|++.....
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r-~~~~~~~~l~~~~~~~~~~~-~~~e~~~~aDvVilavpp~~~~ 78 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEIILYSS-SKNEHFNQLYDKYPTVELAD-NEAEIFTKCDHSFICVPPLAVL 78 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeC-CcHHHHHHHHHHcCCeEEeC-CHHHHHhhCCEEEEecCHHHHH
Confidence 68999997 999999999888763 12245554433 22111 1100111112211 222 246899999999998888
Q ss_pred hhHHHHH---hCCCeEEEcCCCCCCCC------C--CcEEeeccCHHhhcCcccCCCCCcEEE-cCCchHHHHHHHHhHH
Q 017153 116 KFGPIAV---EKGSIVVDNSSAFRMVE------N--VPLVIPEVNPEAMSGIKVGMGKGALIA-NPNCSTIICLMAATPL 183 (376)
Q Consensus 116 ~~~~~~~---~~G~~VIDlS~~~R~~~------~--~~~~lpevN~~~i~~~~~~~~~~~iVa-~PgC~~ta~~l~L~pL 183 (376)
++..++. ..+..||++.+-.-.++ . +.=.+|-..-..-+ +...++ +++....-.. .+..|
T Consensus 79 ~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g~-------g~t~~~~~~~~~~~~~~-~v~~l 150 (277)
T PRK06928 79 PLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVGV-------GTSLVAHAETVNEANKS-RLEET 150 (277)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHhh-------hcEEEecCCCCCHHHHH-HHHHH
Confidence 8777663 35778898887664321 0 11234433322111 233332 3333333222 24455
Q ss_pred HHhCCC----cEEEEEEEccccccChHhH
Q 017153 184 HRRAKV----TRMVVSTYQAASGAGAAAM 208 (376)
Q Consensus 184 ~~~~~i----~~v~v~t~~gvSGaGr~~~ 208 (376)
+..+|- ++-.+++.+++||.|-.=.
T Consensus 151 ~~~~G~~~~v~E~~~d~~tal~gsgPA~~ 179 (277)
T PRK06928 151 LSHFSHVMTIREENMDIASNLTSSSPGFI 179 (277)
T ss_pred HHhCCCEEEEchhhCceeeeeecCHHHHH
Confidence 555553 3335788899999985533
No 88
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.03 E-value=0.00083 Score=64.57 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=54.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
|||+|+|. |.+|+.+.+.|.++++ ++.++. ++... +.....+ .+.....+.+...++|+||+|+|.....+..
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~---~V~~~d-~~~~~~~~a~~~g-~~~~~~~~~~~~~~aDlVilavp~~~~~~~~ 74 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH---TVYGVS-RRESTCERAIERG-LVDEASTDLSLLKDCDLVILALPIGLLLPPS 74 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC---EEEEEE-CCHHHHHHHHHCC-CcccccCCHhHhcCCCEEEEcCCHHHHHHHH
Confidence 48999997 9999999999987633 555443 22110 0000000 0111111223357899999999988877766
Q ss_pred HHHH---hCCCeEEEcCCC
Q 017153 119 PIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 119 ~~~~---~~G~~VIDlS~~ 134 (376)
+.+. ..++.|+|.++-
T Consensus 75 ~~l~~~l~~~~ii~d~~Sv 93 (279)
T PRK07417 75 EQLIPALPPEAIVTDVGSV 93 (279)
T ss_pred HHHHHhCCCCcEEEeCcch
Confidence 6554 346777776653
No 89
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.02 E-value=0.0013 Score=66.14 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=56.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
.++|+|+|++|.+|+.+.+.|..++| ++... +++.. .. ..+.+.++|+||+|+|.....+..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~---~V~~~-d~~~~-------------~~-~~~~~~~aDlVilavP~~~~~~~~ 159 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY---QVRIL-EQDDW-------------DR-AEDILADAGMVIVSVPIHLTEEVI 159 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC---eEEEe-CCCcc-------------hh-HHHHHhcCCEEEEeCcHHHHHHHH
Confidence 47999999779999999999988644 44433 22210 00 012246899999999999888877
Q ss_pred HHHH--hCCCeEEEcCCC
Q 017153 119 PIAV--EKGSIVVDNSSA 134 (376)
Q Consensus 119 ~~~~--~~G~~VIDlS~~ 134 (376)
..+. ..|+.|+|+++-
T Consensus 160 ~~l~~l~~~~iv~Dv~Sv 177 (374)
T PRK11199 160 ARLPPLPEDCILVDLTSV 177 (374)
T ss_pred HHHhCCCCCcEEEECCCc
Confidence 7664 468999999884
No 90
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.01 E-value=0.0016 Score=52.51 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=57.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe--cCCCCCceeeecCcceEEe-ecC--ccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA--SKRSAGKQLSFQDKAYTVE-ELT--EDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~--s~~~~g~~~~~~~~~~~v~-~~~--~~~~~~~DvVf~a~~~~~ 113 (376)
+.||+|+|+ |..|+.++..+... ..+++.++. +++..|+.+. .+++. .++ .+.. ++|+.++|.|...
T Consensus 3 ~~~v~ivGa-g~~G~a~~~~~~~~--~g~~i~~~~dv~~~~~G~~i~----gipV~~~~~~l~~~~-~i~iaii~VP~~~ 74 (96)
T PF02629_consen 3 KTNVIIVGA-GNLGRALLYNGFSM--RGFGIVAVFDVDPEKIGKEIG----GIPVYGSMDELEEFI-EIDIAIITVPAEA 74 (96)
T ss_dssp TEEEEEETT-TSHHHHHHHHHHHH--HCECEEEEEEECTTTTTSEET----TEEEESSHHHHHHHC-TTSEEEEES-HHH
T ss_pred CCeEEEECC-CCcHHHHHHhHHHH--cCCCCEEEEEcCCCccCcEEC----CEEeeccHHHhhhhh-CCCEEEEEcCHHH
Confidence 579999999 77778777544433 456666554 4455566553 46666 332 1123 5999999999999
Q ss_pred hhhhHHHHHhCCCeEEE
Q 017153 114 SKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 114 s~~~~~~~~~~G~~VID 130 (376)
+.+.+.++.++|++-|-
T Consensus 75 a~~~~~~~~~~gIk~i~ 91 (96)
T PF02629_consen 75 AQEVADELVEAGIKGIV 91 (96)
T ss_dssp HHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 99999999999998653
No 91
>PLN02206 UDP-glucuronate decarboxylase
Probab=96.91 E-value=0.0041 Score=63.85 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=59.1
Q ss_pred eeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eee--ecCcceEEeecC--ccCCCCCc
Q 017153 30 RVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS--FQDKAYTVEELT--EDSFDGVD 103 (376)
Q Consensus 30 ~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~--~~~~~~~v~~~~--~~~~~~~D 103 (376)
+++|-+..+.|||.|.|+||++|+.|++.|.++++ ++.++.. ...+. .+. .....+.+...| ...+.++|
T Consensus 110 ~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~---~V~~ld~-~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D 185 (442)
T PLN02206 110 KIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGD---SVIVVDN-FFTGRKENVMHHFSNPNFELIRHDVVEPILLEVD 185 (442)
T ss_pred cCccccccCCCEEEEECcccHHHHHHHHHHHHCcC---EEEEEeC-CCccchhhhhhhccCCceEEEECCccChhhcCCC
Confidence 34555555679999999999999999999988743 5655532 11111 100 011122222222 12245799
Q ss_pred EEEEcCCCch------------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 104 IALFSAGGSI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 104 vVf~a~~~~~------------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+||-+..... +..++..+.+.|+++|-.|+..
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~ 235 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 235 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChH
Confidence 9998764211 1223344456788888888864
No 92
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.88 E-value=0.0021 Score=62.50 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=55.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
.+||+|+|+ |.+|..+.+.|...++ ..++.++ +++..- +.....+....+.....+.+.++|+||+|+|.....+.
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~-~~~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v 82 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGL-AGEIVGA-DRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAV 82 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCC-CcEEEEE-ECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 368999997 9999999999987632 1244433 332110 00000110011111112235689999999999877666
Q ss_pred HHHHH---hCCCeEEEcCCC
Q 017153 118 GPIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~---~~G~~VIDlS~~ 134 (376)
...+. ..|..|+|.++.
T Consensus 83 ~~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 83 AAEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred HHHHHhhCCCCCEEEeCccc
Confidence 65543 457888988763
No 93
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.84 E-value=0.0011 Score=62.77 Aligned_cols=94 Identities=13% Similarity=0.204 Sum_probs=56.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
|||+|+|+ |.+|+.+++.|...++. .+.+.+.+++.. .+.+........+.. +..+ ..++|+||+|++.....+.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~-~~~i~v~~r~~~~~~~l~~~~~~~~~~~-~~~~~~~~aDvVilav~p~~~~~v 77 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPAD-VSEIIVSPRNAQIAARLAERFPKVRIAK-DNQAVVDRSDVVFLAVRPQIAEEV 77 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCC-hheEEEECCCHHHHHHHHHHcCCceEeC-CHHHHHHhCCEEEEEeCHHHHHHH
Confidence 47999997 99999999998876432 222334443211 111111100122221 2222 4679999999998777776
Q ss_pred HHHH-HhCCCeEEEcCCCCC
Q 017153 118 GPIA-VEKGSIVVDNSSAFR 136 (376)
Q Consensus 118 ~~~~-~~~G~~VIDlS~~~R 136 (376)
.+.+ ...|..||+..+...
T Consensus 78 l~~l~~~~~~~vis~~ag~~ 97 (258)
T PRK06476 78 LRALRFRPGQTVISVIAATD 97 (258)
T ss_pred HHHhccCCCCEEEEECCCCC
Confidence 6654 235778999887765
No 94
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.78 E-value=0.003 Score=58.37 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=64.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeeecCcceEEeecC-ccCC---CCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSFQDKAYTVEELT-EDSF---DGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~~~~~~~v~~~~-~~~~---~~~DvVf~a~~~~ 112 (376)
+.+|+|+|+ |..|+.+++.+... .+.++++++.+.+ ..++.+ . ...+...+ .+++ .++|+|+.|+|..
T Consensus 84 ~~rV~IIGa-G~iG~~l~~~~~~~-~~g~~ivgv~D~d~~~~~~~i--~--g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 84 TWNVALVGA-GNLGRALLNYNGFE-KRGFKIVAAFDVDPEKIGTKI--G--GIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CcEEEEECC-CHHHHHHHHhhhcc-cCCcEEEEEEECChhhcCCEe--C--CeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 579999999 99999999865322 2578999887653 222222 1 12232211 1222 3699999999999
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAFRM 137 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~R~ 137 (376)
...+....+.++|++.|.+-.++.+
T Consensus 158 ~~~~i~~~l~~~Gi~~il~~~p~~~ 182 (213)
T PRK05472 158 AAQEVADRLVEAGIKGILNFAPVRL 182 (213)
T ss_pred hHHHHHHHHHHcCCCEEeecCceee
Confidence 9989899999999998877666644
No 95
>PRK08655 prephenate dehydrogenase; Provisional
Probab=96.77 E-value=0.0023 Score=65.68 Aligned_cols=89 Identities=19% Similarity=0.350 Sum_probs=57.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
|||+|+|++|.+|..+.+.|.+.++ ++..+............. ..+.+. .+. +.+.++|+||+|+|.....+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~---~V~v~~r~~~~~~~~a~~-~gv~~~-~~~~e~~~~aDvVIlavp~~~~~~vl 75 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF---EVIVTGRDPKKGKEVAKE-LGVEYA-NDNIDAAKDADIVIISVPINVTEDVI 75 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC---EEEEEECChHHHHHHHHH-cCCeec-cCHHHHhccCCEEEEecCHHHHHHHH
Confidence 5899999889999999999987643 554443211111111100 011111 122 2356899999999998877777
Q ss_pred HHHH---hCCCeEEEcCC
Q 017153 119 PIAV---EKGSIVVDNSS 133 (376)
Q Consensus 119 ~~~~---~~G~~VIDlS~ 133 (376)
..+. ..|+.|+|.++
T Consensus 76 ~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 76 KEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred HHHHhhCCCCCEEEEccc
Confidence 6654 46889999997
No 96
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.74 E-value=0.0022 Score=61.43 Aligned_cols=90 Identities=11% Similarity=0.188 Sum_probs=55.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
|||+|+|. |.+|..+.+.|.+.++ ..++... +++... +.....+ ......+..++.++|+||+|+|.....+..
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~-~~~v~~~-d~~~~~~~~~~~~g--~~~~~~~~~~~~~aD~Vilavp~~~~~~~~ 75 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGL-ISKVYGY-DHNELHLKKALELG--LVDEIVSFEELKKCDVIFLAIPVDAIIEIL 75 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCC-CCEEEEE-cCCHHHHHHHHHCC--CCcccCCHHHHhcCCEEEEeCcHHHHHHHH
Confidence 48999997 9999999999987643 2344433 332110 0000000 100011222234599999999999888877
Q ss_pred HHHH--hCCCeEEEcCCC
Q 017153 119 PIAV--EKGSIVVDNSSA 134 (376)
Q Consensus 119 ~~~~--~~G~~VIDlS~~ 134 (376)
..+. ..|..|+|.++.
T Consensus 76 ~~l~~l~~~~iv~d~gs~ 93 (275)
T PRK08507 76 PKLLDIKENTTIIDLGST 93 (275)
T ss_pred HHHhccCCCCEEEECccc
Confidence 7664 357789997764
No 97
>PRK07680 late competence protein ComER; Validated
Probab=96.74 E-value=0.002 Score=61.66 Aligned_cols=94 Identities=10% Similarity=0.130 Sum_probs=57.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~ 116 (376)
|||+|+|+ |.+|..+++.|.+.++ +..++. +.+++... +.+......+.+.. +..+ ..++|+||+|++.....+
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~-v~~r~~~~~~~~~~~~~g~~~~~-~~~~~~~~aDiVilav~p~~~~~ 77 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLT-ITNRTPAKAYHIKERYPGIHVAK-TIEEVISQSDLIFICVKPLDIYP 77 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCHHHHHHHHHHcCCeEEEC-CHHHHHHhCCEEEEecCHHHHHH
Confidence 47999997 9999999999887642 112333 44443211 11111001122221 2222 468999999999888777
Q ss_pred hHHHHH---hCCCeEEEcCCCCC
Q 017153 117 FGPIAV---EKGSIVVDNSSAFR 136 (376)
Q Consensus 117 ~~~~~~---~~G~~VIDlS~~~R 136 (376)
..+.+. ..+..|||+++...
T Consensus 78 vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 78 LLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHHHHHhhcCCCCEEEEECCCCC
Confidence 776653 35778999998654
No 98
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.71 E-value=0.0058 Score=58.66 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=65.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeee-cCcceEEeec-----CccC-CCC-Cc-EEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSF-QDKAYTVEEL-----TEDS-FDG-VD-IALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~-~~~~~~v~~~-----~~~~-~~~-~D-vVf~a~ 109 (376)
+||.|+||+|..|+++++.+.. ++++|+.. .+....+..... .+.++.+... +.+. +.. +| |+++-+
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT 77 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT 77 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC
Confidence 5899999999999999999876 68999975 444434433221 1124444211 1111 233 88 999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
-.....+++..+.+.|+.+|-.+.-|
T Consensus 78 ~P~~~~~n~~~~~~~gv~~ViGTTG~ 103 (275)
T TIGR02130 78 HPSAVNDNAAFYGKHGIPFVMGTTGG 103 (275)
T ss_pred ChHHHHHHHHHHHHCCCCEEEcCCCC
Confidence 99999999999999999988666554
No 99
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.69 E-value=0.0013 Score=65.20 Aligned_cols=93 Identities=20% Similarity=0.317 Sum_probs=54.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|.|+||||.+|+++.+.|..+ +...++..+. ++ .....+......-.+..+ .+.+.++|+||.+++.......
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~-~gv~~lilv~-R~~~rl~~La~el~~~~i~~l-~~~l~~aDiVv~~ts~~~~~~I 231 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAK-TGVAELLLVA-RQQERLQELQAELGGGKILSL-EEALPEADIVVWVASMPKGVEI 231 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhh-CCCCEEEEEc-CCHHHHHHHHHHhccccHHhH-HHHHccCCEEEECCcCCcCCcC
Confidence 479999999999999999999753 1223555443 32 111111100000001111 1235789999999876443222
Q ss_pred HHHHHhCCCeEEEcCCC
Q 017153 118 GPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~ 134 (376)
-+.....++.+||++=+
T Consensus 232 ~~~~l~~~~~viDiAvP 248 (340)
T PRK14982 232 DPETLKKPCLMIDGGYP 248 (340)
T ss_pred CHHHhCCCeEEEEecCC
Confidence 33445789999999876
No 100
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.67 E-value=0.0066 Score=59.21 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=55.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
.+|||+|+|+ |.+|..+.+.|...+| ++.+. +++.. .++ +...++|+||+|+|.....+
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~---~V~~~-~r~~~---------------~~~~~~~~~advvi~~vp~~~~~~ 62 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH---RVRVW-SRRSG---------------LSLAAVLADADVIVSAVSMKGVRP 62 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC---EEEEE-eCCCC---------------CCHHHHHhcCCEEEEECChHHHHH
Confidence 3589999998 9999999999987644 55433 33221 011 22468999999999987777
Q ss_pred hHHHHH----hCCCeEEEcCCCC
Q 017153 117 FGPIAV----EKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~----~~G~~VIDlS~~~ 135 (376)
..+.+. +.|..|||++..+
T Consensus 63 v~~~l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 63 VAEQVQALNLPPETIIVTATKGL 85 (308)
T ss_pred HHHHHHHhcCCCCcEEEEeCCcc
Confidence 766653 3467899987533
No 101
>PRK10206 putative oxidoreductase; Provisional
Probab=96.67 E-value=0.0029 Score=62.74 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~s 114 (376)
++||||+|+ |.+++. .++.+... .+.++++++++++..-...........+.. +.++ + .++|+|+.|+|+...
T Consensus 1 ~irvgiiG~-G~~~~~~h~~~~~~~-~~~~~l~av~d~~~~~~~~~~~~~~~~~~~-~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 1 VINCAFIGF-GKSTTRYHLPYVLNR-KDSWHVAHIFRRHAKPEEQAPIYSHIHFTS-DLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred CeEEEEECC-CHHHhheehhhHhcC-CCCEEEEEEEcCChhHHHHHHhcCCCcccC-CHHHHhcCCCCCEEEEeCCchHH
Confidence 389999998 987653 45655432 267999999876531111111111122221 2222 3 478999999999999
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+++.+++++|..|+
T Consensus 78 ~~~~~~al~aGkhVl 92 (344)
T PRK10206 78 FEYAKRALEAGKNVL 92 (344)
T ss_pred HHHHHHHHHcCCcEE
Confidence 999999999998877
No 102
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.63 E-value=0.012 Score=51.96 Aligned_cols=81 Identities=14% Similarity=0.111 Sum_probs=51.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEE--eecCccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV--EELTEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v--~~~~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
..||.|+|+ |-+|...++.|.+. ..++.++ +++.. +.+... ..+.+ ..+.+.++.++|+||.|++....-.
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~---ga~V~VI-sp~~~-~~l~~l-~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~ 85 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDT---GAFVTVV-SPEIC-KEMKEL-PYITWKQKTFSNDDIKDAHLIYAATNQHAVNM 85 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEE-cCccC-HHHHhc-cCcEEEecccChhcCCCceEEEECCCCHHHHH
Confidence 589999999 99999999998875 3466655 33221 111110 11222 2344556789999999998876555
Q ss_pred hHHHHHhCCC
Q 017153 117 FGPIAVEKGS 126 (376)
Q Consensus 117 ~~~~~~~~G~ 126 (376)
....+.+.+.
T Consensus 86 ~i~~~a~~~~ 95 (157)
T PRK06719 86 MVKQAAHDFQ 95 (157)
T ss_pred HHHHHHHHCC
Confidence 4544444444
No 103
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.59 E-value=0.0048 Score=58.83 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=50.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC----C------CC-CcEEEEcC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS----F------DG-VDIALFSA 109 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~----~------~~-~DvVf~a~ 109 (376)
+|.|.||||++|+.+++.|.+.++ ++.+++...+.... .+...+...-.|++. + .+ +|.+|++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~---~V~~~~R~~~~~~~--~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~ 75 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV---PFLVASRSSSSSAG--PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVA 75 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC---cEEEEeCCCccccC--CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeC
Confidence 489999999999999999988644 56555422111110 010001110011211 2 46 99999998
Q ss_pred CCc-----hhhhhHHHHHhCCCe-EEEcCCC
Q 017153 110 GGS-----ISKKFGPIAVEKGSI-VVDNSSA 134 (376)
Q Consensus 110 ~~~-----~s~~~~~~~~~~G~~-VIDlS~~ 134 (376)
+.. ....+...+.++|++ +|=+|+.
T Consensus 76 ~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~ 106 (285)
T TIGR03649 76 PPIPDLAPPMIKFIDFARSKGVRRFVLLSAS 106 (285)
T ss_pred CCCCChhHHHHHHHHHHHHcCCCEEEEeecc
Confidence 753 223344555678875 6656653
No 104
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.53 E-value=0.0026 Score=61.38 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=53.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~ 116 (376)
++||+|+|. |.+|..+.+.|...+ .++.+ .+++.. .+.+... ...+.. +++ .+.++|+||+|+|.....+
T Consensus 2 ~~~IgviG~-G~mG~~~a~~l~~~g---~~v~~-~d~~~~~~~~~~~~--g~~~~~-~~~e~~~~~d~vi~~vp~~~~~~ 73 (296)
T PRK11559 2 TMKVGFIGL-GIMGKPMSKNLLKAG---YSLVV-YDRNPEAVAEVIAA--GAETAS-TAKAVAEQCDVIITMLPNSPHVK 73 (296)
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCC---CeEEE-EcCCHHHHHHHHHC--CCeecC-CHHHHHhcCCEEEEeCCCHHHHH
Confidence 478999997 999999999998753 35543 333211 1111111 111211 222 2468999999999765433
Q ss_pred hH----H---HHHhCCCeEEEcCCCC
Q 017153 117 FG----P---IAVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~----~---~~~~~G~~VIDlS~~~ 135 (376)
.+ . .....|..+||.|...
T Consensus 74 ~v~~~~~~~~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 74 EVALGENGIIEGAKPGTVVIDMSSIA 99 (296)
T ss_pred HHHcCcchHhhcCCCCcEEEECCCCC
Confidence 22 1 1224678899998764
No 105
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=96.51 E-value=0.013 Score=59.97 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=55.0
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeee--cCcceEEeecC--ccCCCCCcEEEEcC
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSF--QDKAYTVEELT--EDSFDGVDIALFSA 109 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~--~~~~~~v~~~~--~~~~~~~DvVf~a~ 109 (376)
..+.|||.|.|+||++|+.|++.|.+++ .+++++... ..+. .... ....+.+...| ...+.++|+||-|.
T Consensus 117 ~~~~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr~-~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlA 192 (436)
T PLN02166 117 GRKRLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDNF-FTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLA 192 (436)
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCC-CCccHhHhhhhccCCceEEEECccccccccCCCEEEECc
Confidence 3345899999999999999999998864 366665422 1111 1100 01122222222 12246899999987
Q ss_pred CCch------------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 110 GGSI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 110 ~~~~------------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.... +..++..+.+.|+++|=.|+..
T Consensus 193 a~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~ 236 (436)
T PLN02166 193 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSE 236 (436)
T ss_pred eeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHH
Confidence 4211 1222333345688888777754
No 106
>PLN02427 UDP-apiose/xylose synthase
Probab=96.50 E-value=0.017 Score=57.84 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=27.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|||.|.|+|||+|+.|++.|.++ ...++.++.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l~ 46 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLALD 46 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEEe
Confidence 3578999999999999999999876 334676664
No 107
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.47 E-value=0.0012 Score=58.32 Aligned_cols=88 Identities=13% Similarity=0.256 Sum_probs=46.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISK- 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~- 115 (376)
++|||+||. |..|..+.+.|.+++| ++.... ++. .-+.+... .....+ ++.++ .++|+||+|+++..+.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~---~v~~~d-~~~~~~~~~~~~--g~~~~~-s~~e~~~~~dvvi~~v~~~~~v~ 72 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY---EVTVYD-RSPEKAEALAEA--GAEVAD-SPAEAAEQADVVILCVPDDDAVE 72 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT---EEEEEE-SSHHHHHHHHHT--TEEEES-SHHHHHHHBSEEEE-SSSHHHHH
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC---eEEeec-cchhhhhhhHHh--hhhhhh-hhhhHhhcccceEeecccchhhh
Confidence 379999998 9999999999988644 665443 221 11111111 122222 23333 6789999999986543
Q ss_pred hhHHH--HH---hCCCeEEEcCCC
Q 017153 116 KFGPI--AV---EKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~--~~---~~G~~VIDlS~~ 134 (376)
+.... +. ..|..+||+|..
T Consensus 73 ~v~~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 73 AVLFGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp HHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred hhhhhhHHhhccccceEEEecCCc
Confidence 33222 21 345566666554
No 108
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.47 E-value=0.011 Score=58.62 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=60.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC------C-CCeEEEEEecCCC-----CCceeee-------cC--cce----EEee
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD------F-PYRSIKMLASKRS-----AGKQLSF-------QD--KAY----TVEE 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~------~-p~~~l~~v~s~~~-----~g~~~~~-------~~--~~~----~v~~ 93 (376)
++||+|+|. |.||+.++++|.++. + -.+++++++.++. .|-.+.. .+ ..+ ....
T Consensus 2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 589999998 999999999987631 1 1477877765321 1211100 00 001 0011
Q ss_pred cCccC-C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcC
Q 017153 94 LTEDS-F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 94 ~~~~~-~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
.+.++ + .++||++.|++...+.++..+++++|+.||-.+
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtan 122 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSN 122 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECC
Confidence 12222 2 478999999999999999999999999999544
No 109
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.46 E-value=0.0023 Score=56.22 Aligned_cols=106 Identities=16% Similarity=0.338 Sum_probs=64.2
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee--------cC----cceEEeecCc-cCCCCCcEEE
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--------QD----KAYTVEELTE-DSFDGVDIAL 106 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~--------~~----~~~~v~~~~~-~~~~~~DvVf 106 (376)
||+|+|+ |..|..+...|..++ .++... +++. .-+.+.. .+ ..+.+. .|. +.+.++|+++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g---~~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t-~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNG---HEVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKAT-TDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCT---EEEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEE-SSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcC---CEEEEE-eccHHHHHHHHHhCCCCCCCCCcccCcccccc-cCHHHHhCcccEEE
Confidence 7999999 999999999999873 455544 3331 1000000 00 123332 233 3358999999
Q ss_pred EcCCCchhhhhHHHHH---hCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 107 FSAGGSISKKFGPIAV---EKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
.|+|+...+++.+++. +.+..+|-++.-| +.+.-..+.++-++.+.
T Consensus 75 iavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~--~~~~~~~~~~~i~~~~~ 123 (157)
T PF01210_consen 75 IAVPSQAHREVLEQLAPYLKKGQIIISATKGF--EPGTLLLLSEVIEEILP 123 (157)
T ss_dssp E-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE--ETTEEEEHHHHHHHHHS
T ss_pred ecccHHHHHHHHHHHhhccCCCCEEEEecCCc--ccCCCccHHHHHHHHhh
Confidence 9999999988888775 4788899888777 23334555566555554
No 110
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.45 E-value=0.0087 Score=58.87 Aligned_cols=93 Identities=14% Similarity=0.279 Sum_probs=56.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC------Cceeee-cCcce-----EEe-ecCccCCCCCcEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA------GKQLSF-QDKAY-----TVE-ELTEDSFDGVDIA 105 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~------g~~~~~-~~~~~-----~v~-~~~~~~~~~~DvV 105 (376)
+|||+|+|+ |.+|..+...|.+++| ++..+..+... |..+.. .+... .+. ..+.+...++|+|
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~---~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 77 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA---DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLV 77 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC---cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEE
Confidence 479999998 9999999999988754 45444322111 111100 00000 011 1123335689999
Q ss_pred EEcCCCchhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 106 LFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
|+|++.....+..+.+. ..+..||+++..+
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCC
Confidence 99999887777666554 3567788886654
No 111
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.45 E-value=0.0069 Score=57.46 Aligned_cols=157 Identities=14% Similarity=0.201 Sum_probs=84.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
|||+|||. |.+|..+++.|.+.++ +..++.+..+++ ..+.-......+.+.. +.. ...++|+||+|++.....+.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~-~~~~~~~~~~g~~~~~-~~~e~~~~aDvVil~v~~~~~~~v 77 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSN-PARRDVFQSLGVKTAA-SNTEVVKSSDVIILAVKPQVVKDV 77 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCC-HHHHHHHHHcCCEEeC-ChHHHHhcCCEEEEEECcHHHHHH
Confidence 68999997 9999999999887644 233554432332 2111001001122221 222 24689999999988777777
Q ss_pred HHHHH---hCCCeEEEcCCCCCCCC------CCcE--EeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHh
Q 017153 118 GPIAV---EKGSIVVDNSSAFRMVE------NVPL--VIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRR 186 (376)
Q Consensus 118 ~~~~~---~~G~~VIDlS~~~R~~~------~~~~--~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~ 186 (376)
...+. ..|..||+..+....+. ..++ .+|- .+..+.. ....++..+++.... .-.+.+|++.
T Consensus 78 l~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~-~~~~~~~-----~~~~l~~~~~~~~~~-~~~v~~l~~~ 150 (266)
T PLN02688 78 LTELRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPN-TPCLVGE-----AASVMSLGPAATADD-RDLVATLFGA 150 (266)
T ss_pred HHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCC-cHHHHhC-----ceEEEEeCCCCCHHH-HHHHHHHHHh
Confidence 66553 35677888766553221 0022 1232 2222221 012344455555444 3457788887
Q ss_pred CCCcEEE-----EEEEccccccChHh
Q 017153 187 AKVTRMV-----VSTYQAASGAGAAA 207 (376)
Q Consensus 187 ~~i~~v~-----v~t~~gvSGaGr~~ 207 (376)
+|- -.. ++...+.+|.|..-
T Consensus 151 ~G~-~~~~~e~~~d~~~~~~g~g~a~ 175 (266)
T PLN02688 151 VGK-IWVVDEKLLDAVTGLSGSGPAY 175 (266)
T ss_pred CCC-EEEeCHHHcchhHhhhcCHHHH
Confidence 663 222 23445677776553
No 112
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0051 Score=58.88 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=95.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCce--eeecCcceEEeecCccC-CCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQ--LSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~~--~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~ 115 (376)
+||+++|+ |..|+.+++-|.+++ .+..++. +..++ ..+. +.... +... ..+... ...+|+||+|.......
T Consensus 2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~-~e~~~~l~~~~-g~~~-~~~~~~~~~~advv~LavKPq~~~ 76 (266)
T COG0345 2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEII-VTNRS-EEKRAALAAEY-GVVT-TTDNQEAVEEADVVFLAVKPQDLE 76 (266)
T ss_pred ceEEEEcc-CHHHHHHHHHHHhcCCCCcceEE-EeCCC-HHHHHHHHHHc-CCcc-cCcHHHHHhhCCEEEEEeChHhHH
Confidence 78999999 999999999888874 2333443 33332 2221 11110 1111 222222 36799999999998888
Q ss_pred hhHHHHHh--CCCeEEEcCCCCCCCC------CCc--EEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHH
Q 017153 116 KFGPIAVE--KGSIVVDNSSAFRMVE------NVP--LVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHR 185 (376)
Q Consensus 116 ~~~~~~~~--~G~~VIDlS~~~R~~~------~~~--~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~ 185 (376)
+..+++.. .+..||+..+..+.+. +.+ =++|-.+-.--+. -.-+..+..|+......+.. |++
T Consensus 77 ~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g------~t~i~~~~~~~~~~~~~v~~-l~~ 149 (266)
T COG0345 77 EVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAG------VTAISANANVSEEDKAFVEA-LLS 149 (266)
T ss_pred HHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCc------ceeeecCccCCHHHHHHHHH-HHH
Confidence 88888763 6788999888776432 112 2456554332221 13455668888777655443 344
Q ss_pred hCC----CcEEEEEEEccccccChH
Q 017153 186 RAK----VTRMVVSTYQAASGAGAA 206 (376)
Q Consensus 186 ~~~----i~~v~v~t~~gvSGaGr~ 206 (376)
.+| |++-.+++.+++||.|-.
T Consensus 150 ~~G~v~~v~E~~~da~TaisGSgPA 174 (266)
T COG0345 150 AVGKVVEVEESLMDAVTALSGSGPA 174 (266)
T ss_pred hcCCeEEechHHhhHHHHHhcCCHH
Confidence 444 345568999999999854
No 113
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.41 E-value=0.0053 Score=59.74 Aligned_cols=91 Identities=12% Similarity=0.175 Sum_probs=55.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC------c------ceEEeecCcc-CCCCCcEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD------K------AYTVEELTED-SFDGVDIAL 106 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~------~------~~~v~~~~~~-~~~~~DvVf 106 (376)
|||+|+|+ |.+|..+...|...+| ++.++......-+.+...+ . ..... .+++ ...++|+||
T Consensus 2 mkI~iiG~-G~mG~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~vi 76 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAIVLARNGH---DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLAEALADADLIL 76 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHHHHHhCCCEEE
Confidence 68999998 9999999999987644 4544432111101111000 0 11111 1222 246899999
Q ss_pred EcCCCchhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 107 FSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
+|++.....+..+.+. ..+..|||++..+
T Consensus 77 ~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 77 VAVPSQALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred EeCCHHHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 9999976666655554 3577899998554
No 114
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.41 E-value=0.0041 Score=53.78 Aligned_cols=71 Identities=20% Similarity=0.384 Sum_probs=46.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeee------cCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~------~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
|||+|+||+|.+|..++-.|...+. .-|++.+-... ..|..... ......+..-+.+++.++|+|+.+.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 6999999999999999998887632 34566554331 11211110 112334444446678999999998765
No 115
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=96.37 E-value=0.022 Score=55.80 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=43.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce----ee--e----cCcceEEee-cCccCCCCCcEEEEc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ----LS--F----QDKAYTVEE-LTEDSFDGVDIALFS 108 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~----~~--~----~~~~~~v~~-~~~~~~~~~DvVf~a 108 (376)
|||+|+|+||++|..++..|...++ ..++.++.......+. .. . ......+.. .+.+++.++|+||.|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEe
Confidence 6899999999999999999988733 2366665432211111 11 0 111122322 234457899999999
Q ss_pred CCC
Q 017153 109 AGG 111 (376)
Q Consensus 109 ~~~ 111 (376)
.+.
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 874
No 116
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.36 E-value=0.0059 Score=52.76 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=54.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeec-Ccc-eEEeecCccC-CCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ-DKA-YTVEELTEDS-FDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~-~~~-~~v~~~~~~~-~~~~DvVf~a~~~~~s 114 (376)
..+|+|+|+ |.+|+.+++.|..+ ...++. +.+++. ..+.+... ... +.....+..+ +.++|+|+.|+|....
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~--g~~~v~-v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAEL--GAAKIV-IVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHC--CCCEEE-EEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence 478999998 99999999999876 323444 333321 11111110 000 0111112222 5789999999999764
Q ss_pred ----hhhHHHHHhCCCeEEEcCCC
Q 017153 115 ----KKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 115 ----~~~~~~~~~~G~~VIDlS~~ 134 (376)
..........|..|+|++..
T Consensus 95 ~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 95 PGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCHHHcCCCCEEEEcCcC
Confidence 22223345678999999764
No 117
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.34 E-value=0.025 Score=56.56 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+|||.|.|+|||+|+.|++.|.+++| ++..+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~---~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH---YIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC---EEEEEE
Confidence 468999999999999999999988744 666554
No 118
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.34 E-value=0.014 Score=57.58 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=55.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC-----CCCeEEEEEecCCC-----CCceeee----cC-cceE---EeecCccCC--
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD-----FPYRSIKMLASKRS-----AGKQLSF----QD-KAYT---VEELTEDSF-- 99 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~-----~p~~~l~~v~s~~~-----~g~~~~~----~~-~~~~---v~~~~~~~~-- 99 (376)
|||+|+|+ |.||+.++++|.++. ...++++++++++. .|-.+.. .. ..+. ....+.+++
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 58999999 999999999987631 13578888765431 1111100 00 0010 011111211
Q ss_pred CCCcEEEEcCCCch----hhhhHHHHHhCCCeEEEcC
Q 017153 100 DGVDIALFSAGGSI----SKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 100 ~~~DvVf~a~~~~~----s~~~~~~~~~~G~~VIDlS 132 (376)
.++|++++|++... ...+.++++++|+-||-.+
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaN 116 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTAN 116 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCC
Confidence 47899999997532 4456688899999999544
No 119
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.28 E-value=0.0046 Score=61.41 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=57.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcC----C
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSA----G 110 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~----~ 110 (376)
+++||||+|+ |+ |+..++.+.+. | .++++++.+++.. .+.++... ++... .+.++ +.+.|+++.++ |
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~--~~~~eLvaV~d~~~erA~~~A~~~-gi~~y-~~~eell~d~Di~~V~ipt~~P 75 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAA--PERFELAGILAQGSERSRALAHRL-GVPLY-CEVEELPDDIDIACVVVRSAIV 75 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhC--CCCcEEEEEEcCCHHHHHHHHHHh-CCCcc-CCHHHHhcCCCEEEEEeCCCCC
Confidence 3689999998 76 88899998876 6 8999999876532 12222110 12221 12222 34556555554 5
Q ss_pred CchhhhhHHHHHhCCCeEE
Q 017153 111 GSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VI 129 (376)
+....+++.+++++|+.|+
T Consensus 76 ~~~H~e~a~~aL~aGkHVL 94 (343)
T TIGR01761 76 GGQGSALARALLARGIHVL 94 (343)
T ss_pred CccHHHHHHHHHhCCCeEE
Confidence 5688899999999999988
No 120
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.23 E-value=0.026 Score=54.98 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=62.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|+|+|.+|.+|+-+.++|.++ ..++....++.. ++.+ ...+|+||.|+|... ..
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~---gatVtv~~~~t~-----------------~l~e~~~~ADIVIsavg~~~--~v 216 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQA---HCSVTVVHSRST-----------------DAKALCRQADIVVAAVGRPR--LI 216 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEECCCCC-----------------CHHHHHhcCCEEEEecCChh--cc
Confidence 489999999889999999999875 346654433211 1222 367999999998753 23
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
-+...+.|+.|||.|-.+-.+++-.-.+-.++.+...
T Consensus 217 ~~~~ik~GaiVIDvgin~~~~~g~~kl~GDvdf~~~~ 253 (301)
T PRK14194 217 DADWLKPGAVVIDVGINRIDDDGRSRLVGDVDFDSAL 253 (301)
T ss_pred cHhhccCCcEEEEecccccCCCCCcceecccchHHHH
Confidence 3445788999999986642111111245566766655
No 121
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.22 E-value=0.054 Score=52.38 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=82.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc-----------eeeecC----------cceEEeecCcc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK-----------QLSFQD----------KAYTVEELTED 97 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~-----------~~~~~~----------~~~~v~~~~~~ 97 (376)
.||||+|+ |..|..+...++.++| +++.+... +...+ ....+. ..+.+. .+.+
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~-~~~~ 80 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGV---DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFT-TDLG 80 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEee-CCHH
Confidence 58999999 9999999999888644 55544321 11111 000000 112222 2334
Q ss_pred CCCCCcEEEEcCCCchhhhhH-----HHHH-hCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCCC
Q 017153 98 SFDGVDIALFSAGGSISKKFG-----PIAV-EKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGKG 163 (376)
Q Consensus 98 ~~~~~DvVf~a~~~~~s~~~~-----~~~~-~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~~ 163 (376)
.+.++|+||.|.+.+...+.. +++. +.++.++++|+.+...+ +--+++--+|+..+.+ -.
T Consensus 81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~------lv 154 (286)
T PRK07819 81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLP------LV 154 (286)
T ss_pred HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCc------eE
Confidence 568999999999987764433 2444 67899999999986432 1124555566544332 24
Q ss_pred cEEEcCCchHHHHHHHHhHHHH-hCCC
Q 017153 164 ALIANPNCSTIICLMAATPLHR-RAKV 189 (376)
Q Consensus 164 ~iVa~PgC~~ta~~l~L~pL~~-~~~i 189 (376)
.+|..+++.+..+.. +.++.. ..+-
T Consensus 155 Elv~~~~T~~~~~~~-~~~~~~~~lgk 180 (286)
T PRK07819 155 ELVPTLVTSEATVAR-AEEFASDVLGK 180 (286)
T ss_pred EEeCCCCCCHHHHHH-HHHHHHHhCCC
Confidence 577777777666555 556644 3443
No 122
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.21 E-value=0.033 Score=49.73 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=66.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..||.|+|+.+++|..+++.|.++ ..++. +.+++. .++ .+.+.++|+||.|++... -+-
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~---g~~V~-v~~r~~--------------~~l-~~~l~~aDiVIsat~~~~--ii~ 102 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNR---NATVT-VCHSKT--------------KNL-KEHTKQADIVIVAVGKPG--LVK 102 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC---CCEEE-EEECCc--------------hhH-HHHHhhCCEEEEcCCCCc--eec
Confidence 589999999445799899999886 23544 333321 010 223578999999998753 233
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCch
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~ 172 (376)
+...+.|..+||++-+.-.+....-....++.+.++.. ...+...||=+
T Consensus 103 ~~~~~~~~viIDla~prdvd~~~~~~~G~~d~~~~~~~-----~~~~~~~pggv 151 (168)
T cd01080 103 GDMVKPGAVVIDVGINRVPDKSGGKLVGDVDFESAKEK-----ASAITPVPGGV 151 (168)
T ss_pred HHHccCCeEEEEccCCCcccccCCCeeCCcCHHHHHhh-----ccCcCCCCCcC
Confidence 34456789999999875222101234566777766632 23455555543
No 123
>PLN02712 arogenate dehydrogenase
Probab=96.21 E-value=0.0095 Score=64.24 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=57.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C-CCCcEEEEcCCCchhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSISK 115 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~-~~~DvVf~a~~~~~s~ 115 (376)
.++||+|||. |.+|+.+.+.|.+.+ .++.++. ++.. ...... ..+... .+.++ . .++|+||+|+|.....
T Consensus 51 ~~~kIgIIG~-G~mG~slA~~L~~~G---~~V~~~d-r~~~-~~~A~~-~Gv~~~-~d~~e~~~~~aDvViLavP~~~~~ 122 (667)
T PLN02712 51 TQLKIAIIGF-GNYGQFLAKTLISQG---HTVLAHS-RSDH-SLAARS-LGVSFF-LDPHDLCERHPDVILLCTSIISTE 122 (667)
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHCC---CEEEEEe-CCHH-HHHHHH-cCCEEe-CCHHHHhhcCCCEEEEcCCHHHHH
Confidence 4689999996 999999999998763 4665543 3211 111100 011111 12222 2 4689999999998877
Q ss_pred hhHHHHH----hCCCeEEEcCCC
Q 017153 116 KFGPIAV----EKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~----~~G~~VIDlS~~ 134 (376)
+.++.+. ..|+.|+|.++-
T Consensus 123 ~vl~~l~~~~l~~g~iVvDv~Sv 145 (667)
T PLN02712 123 NVLKSLPLQRLKRNTLFVDVLSV 145 (667)
T ss_pred HHHHhhhhhcCCCCeEEEECCCC
Confidence 7776553 358899999865
No 124
>PLN02712 arogenate dehydrogenase
Probab=96.19 E-value=0.009 Score=64.42 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=57.2
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CC-CCcEEEEcCCCchhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FD-GVDIALFSAGGSISK 115 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~-~~DvVf~a~~~~~s~ 115 (376)
+++||+|||. |.+|+.+.+.|.+.+ .++.+. +++...+..... ..... .+.++ .. .+|+||+|+|.....
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G---~~V~~~-dr~~~~~~a~~~--Gv~~~-~~~~el~~~~aDvVILavP~~~~~ 439 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQG---HTVLAY-SRSDYSDEAQKL--GVSYF-SDADDLCEEHPEVILLCTSILSTE 439 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCc---CEEEEE-ECChHHHHHHHc--CCeEe-CCHHHHHhcCCCEEEECCChHHHH
Confidence 3689999997 999999999998753 466544 333211110001 11111 12222 22 589999999998887
Q ss_pred hhHHHHH----hCCCeEEEcCCC
Q 017153 116 KFGPIAV----EKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~----~~G~~VIDlS~~ 134 (376)
+.+..+. +.|+.|+|.++.
T Consensus 440 ~vi~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 440 KVLKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred HHHHHHHHhcCCCCcEEEECCCc
Confidence 7777554 358899999876
No 125
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.14 E-value=0.041 Score=53.70 Aligned_cols=93 Identities=15% Similarity=0.321 Sum_probs=53.3
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-----CCCceeeecCcceEE---eec-CccCCCCCcEEEE
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-----SAGKQLSFQDKAYTV---EEL-TEDSFDGVDIALF 107 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-----~~g~~~~~~~~~~~v---~~~-~~~~~~~~DvVf~ 107 (376)
+++|||+|+|+ |.+|..+...|.+.+| ++..+.... ..|..+.....+..+ ... +++....+|+||+
T Consensus 3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~---~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 3 SETPRIGIIGT-GAIGGFYGAMLARAGF---DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CcCcEEEEECC-CHHHHHHHHHHHHCCC---eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 45689999998 9999999999987643 555443221 012111110011111 111 1223457899999
Q ss_pred cCCCchhhhhHHHHH---hCCCeEEEcCC
Q 017153 108 SAGGSISKKFGPIAV---EKGSIVVDNSS 133 (376)
Q Consensus 108 a~~~~~s~~~~~~~~---~~G~~VIDlS~ 133 (376)
|++.....+..+.+. ..+..||.+-.
T Consensus 79 avK~~~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 79 GLKTTANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred EecCCChHhHHHHHhhhcCCCCEEEEecC
Confidence 999887766555443 34556665543
No 126
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.09 E-value=0.0086 Score=51.28 Aligned_cols=90 Identities=14% Similarity=0.261 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee--cCcceEEeecCc--cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--QDKAYTVEELTE--DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~--~~~~~~v~~~~~--~~~~~~DvVf~a~~~~~ 113 (376)
..||.|+|| |-+|+.++..|... ..-++..+ +|+. ..+.+.. .+..+.+..++. +.+.++|+||.|+|.+.
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~--g~~~i~i~-nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAAL--GAKEITIV-NRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHT--TSSEEEEE-ESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCEEEEECC-HHHHHHHHHHHHHc--CCCEEEEE-ECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 489999999 99999999999887 33345544 3331 1112211 122334444331 12468999999999876
Q ss_pred hhhhHHHHHhCC----CeEEEcCC
Q 017153 114 SKKFGPIAVEKG----SIVVDNSS 133 (376)
Q Consensus 114 s~~~~~~~~~~G----~~VIDlS~ 133 (376)
. ...+...+.. ..|+|++-
T Consensus 88 ~-~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 88 P-IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp T-SSTHHHHTTTCHHCSEEEES-S
T ss_pred c-ccCHHHHHHHHhhhhceecccc
Confidence 6 3334444544 38999974
No 127
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.07 E-value=0.021 Score=54.27 Aligned_cols=151 Identities=11% Similarity=0.161 Sum_probs=80.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
|||+|+|+ |..|..+++.|.+.+... -++. +.+++. .+ . ..... .++. ...++|+||+|++.....++
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~-~~-~-----~~~~~-~~~~~~~~~~D~Vilavkp~~~~~v 73 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIY-YHTPSK-KN-T-----PFVYL-QSNEELAKTCDIIVLAVKPDLAGKV 73 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcceEE-EECCCh-hc-C-----CeEEe-CChHHHHHhCCEEEEEeCHHHHHHH
Confidence 78999998 999999999998764221 2343 333321 11 0 11111 1222 24688999999999888888
Q ss_pred HHHHHh--CCCeEEEcCCCCCCCC-------C--CcEEeeccCHHhhcCcccCCCCCcEEE-cCCchHHHHHHHHhHHHH
Q 017153 118 GPIAVE--KGSIVVDNSSAFRMVE-------N--VPLVIPEVNPEAMSGIKVGMGKGALIA-NPNCSTIICLMAATPLHR 185 (376)
Q Consensus 118 ~~~~~~--~G~~VIDlS~~~R~~~-------~--~~~~lpevN~~~i~~~~~~~~~~~iVa-~PgC~~ta~~l~L~pL~~ 185 (376)
.+.+.. .+..||...+....+. . +.-.+|... ..+.. +..++. ..++...... .+.-|++
T Consensus 74 l~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p-~~~g~------g~t~i~~~~~~~~~~~~-~v~~l~~ 145 (260)
T PTZ00431 74 LLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTP-SLVGQ------GSLVFCANNNVDSTDKK-KVIDIFS 145 (260)
T ss_pred HHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCCch-hHhcc------eeEEEEeCCCCCHHHHH-HHHHHHH
Confidence 877653 1223444444443211 0 012344332 22321 223332 2344334433 3445555
Q ss_pred hCCC----cEEEEEEEccccccChHhH
Q 017153 186 RAKV----TRMVVSTYQAASGAGAAAM 208 (376)
Q Consensus 186 ~~~i----~~v~v~t~~gvSGaGr~~~ 208 (376)
..|. ++=.+++++++||.|-.-.
T Consensus 146 ~~G~~~~v~E~~~d~~ta~~gsgPA~~ 172 (260)
T PTZ00431 146 ACGIIQEIKEKDMDIATAISGCGPAYV 172 (260)
T ss_pred hCCcEEEEChHHcchhhhhcCCHHHHH
Confidence 5553 2225788899999975533
No 128
>PLN00016 RNA-binding protein; Provisional
Probab=96.07 E-value=0.023 Score=56.72 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=54.7
Q ss_pred CCCEEEEE----CcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee--------e-cCcceEEeecCc---cC-C-
Q 017153 38 SAPSVAVV----GVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------F-QDKAYTVEELTE---DS-F- 99 (376)
Q Consensus 38 ~~irVaIv----GaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~--------~-~~~~~~v~~~~~---~~-~- 99 (376)
+++||.|+ |+||++|+.|++.|.+.+| ++.++.........+. . ....+.+...|. +. +
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~---~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~ 127 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH---EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVA 127 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC---EEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhc
Confidence 35799999 9999999999999988644 6666653322111110 0 001122222121 11 2
Q ss_pred -CCCcEEEEcCCCch--hhhhHHHHHhCCCe-EEEcCCC
Q 017153 100 -DGVDIALFSAGGSI--SKKFGPIAVEKGSI-VVDNSSA 134 (376)
Q Consensus 100 -~~~DvVf~a~~~~~--s~~~~~~~~~~G~~-VIDlS~~ 134 (376)
.++|+||.+.+... ...+.+.+.+.|++ +|=+|+.
T Consensus 128 ~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~ 166 (378)
T PLN00016 128 GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSA 166 (378)
T ss_pred cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccH
Confidence 47899999876543 34445555567874 6656654
No 129
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.00 E-value=0.018 Score=56.84 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=42.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCCC----CCceeeec------CcceEEeecC-ccCCCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQ------DKAYTVEELT-EDSFDGVD 103 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~~----~g~~~~~~------~~~~~v~~~~-~~~~~~~D 103 (376)
++||+|+||+|++|..++..|..++. ...+++++.-... .|..+... ..++.+. .+ .+++.++|
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~-~~~~~~l~~aD 80 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVAT-TDPEEAFKDVD 80 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceec-CCHHHHhCCCC
Confidence 47999999999999999998887621 1137776643221 22221111 0112121 12 24568899
Q ss_pred EEEEcCCC
Q 017153 104 IALFSAGG 111 (376)
Q Consensus 104 vVf~a~~~ 111 (376)
+||.+.+.
T Consensus 81 iVI~tAG~ 88 (325)
T cd01336 81 VAILVGAM 88 (325)
T ss_pred EEEEeCCc
Confidence 99888765
No 130
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.98 E-value=0.019 Score=56.45 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=55.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCC-------CCeEEEEEecCCCCCceeeecCcc-eEE-eec----CccC--CCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF-------PYRSIKMLASKRSAGKQLSFQDKA-YTV-EEL----TEDS--FDGV 102 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~-------p~~~l~~v~s~~~~g~~~~~~~~~-~~v-~~~----~~~~--~~~~ 102 (376)
+++||+|+|. |.||+.++++|.+++. -.++++.++.++-.-.. .....+ ..+ .+. ..+. -.+.
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-DLDLLNAEVWTTDGALSLGDEVLLDEDI 79 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-cccccchhhheecccccccHhhhccccC
Confidence 5799999998 9999999999987521 24666666544311100 011011 001 111 0111 1478
Q ss_pred cEEEEcCCC--chhh--hhHHHHHhCCCeEEE
Q 017153 103 DIALFSAGG--SISK--KFGPIAVEKGSIVVD 130 (376)
Q Consensus 103 DvVf~a~~~--~~s~--~~~~~~~~~G~~VID 130 (376)
|+|+.+++. +.+. ++..++++.|..||-
T Consensus 80 dvvve~~~~d~~~~~~~~~~~~al~~GkhVVT 111 (333)
T COG0460 80 DVVVELVGGDVEPAEPADLYLKALENGKHVVT 111 (333)
T ss_pred CEEEecCcccCCchhhHHHHHHHHHcCCeEEC
Confidence 999999887 3344 667788899999993
No 131
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.98 E-value=0.021 Score=56.00 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=43.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce---eee---cCcceEEeecC---ccC----CCCCcE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ---LSF---QDKAYTVEELT---EDS----FDGVDI 104 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~---~~~---~~~~~~v~~~~---~~~----~~~~Dv 104 (376)
++++|.|-|||||+|..+++.|++++| ++.+.+.+....+. +.. ....+.+...| +.. +++||.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY---~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdg 81 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY---TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDG 81 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC---EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCE
Confidence 468999999999999999999999854 66665532222111 111 11224433222 222 479999
Q ss_pred EEEcC
Q 017153 105 ALFSA 109 (376)
Q Consensus 105 Vf~a~ 109 (376)
||.+.
T Consensus 82 VfH~A 86 (327)
T KOG1502|consen 82 VFHTA 86 (327)
T ss_pred EEEeC
Confidence 99864
No 132
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.96 E-value=0.013 Score=55.31 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.9
Q ss_pred EEEEEEechHHhhHHHHHHHHHHhc
Q 017153 351 LDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 351 ~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
+.+.+.-+|..-||||..+.++++.
T Consensus 331 ~kfv~L~hnt~~gaag~G~l~aev~ 355 (361)
T KOG4777|consen 331 GKFVVLDHNTCGGAAGKGALLAEVQ 355 (361)
T ss_pred cceEEEEeeeehhhhcchhHHHHHH
Confidence 5677888999999999999999875
No 133
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.94 E-value=0.035 Score=55.96 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=26.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+||.|.|+||++|+.+++.|.+++ .+++++.
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~ 91 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG---YNVVAVA 91 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 5799999999999999999998864 3666554
No 134
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.93 E-value=0.052 Score=50.84 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.||||++|+.+++.|.++++ ++.++.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~---~V~~~~ 48 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGF---AVKAGV 48 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC---EEEEEe
Confidence 47999999999999999999987633 555544
No 135
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.93 E-value=0.024 Score=56.88 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=58.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCCCceee----e-------cC-------------cceEEe-e
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLS----F-------QD-------------KAYTVE-E 93 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~g~~~~----~-------~~-------------~~~~v~-~ 93 (376)
+||+|+|+||-+|..-++.+.++ | .+++++++..+...+... + .. .++.+. .
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~--p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G 79 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRN--PDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAG 79 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhC--ccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEC
Confidence 68999999999999999999876 5 689998874333221110 0 00 011111 1
Q ss_pred cC-cc---CCCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 94 LT-ED---SFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 94 ~~-~~---~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
.+ .. ...++|+|+.|.+.....+..-.++++|..|.
T Consensus 80 ~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~Va 119 (385)
T PRK05447 80 EEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIA 119 (385)
T ss_pred hhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEE
Confidence 11 11 12479999999998877777777789998877
No 136
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.93 E-value=0.02 Score=54.49 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=52.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC---CCCCceeee-cCcceEEeecCccCCCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---RSAGKQLSF-QDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~---~~~g~~~~~-~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
-.|||+||||-+|..+.|.|..+ +...++..-.+. ++.-..+.. -+.. .+..++.+.....+++|.|+- ....
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~-~~~~~ll~r~aea~~rq~l~~l~e~~~~~-~i~s~d~~~~~e~i~v~vAs~-~~g~ 244 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPK-VGVKELLLRDAEARNRQRLTLLQEELGRG-KIMSLDYALPQEDILVWVASM-PKGV 244 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccc-cCEEEEecccHHhhhhhhhhhcccccCCC-eeeeccccccccceEEEEeec-CCCc
Confidence 57999999999999999999876 122232221111 111111111 1111 123334444445555555543 3345
Q ss_pred hhHHHHHhCCCeEEEcCCC
Q 017153 116 KFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~ 134 (376)
+..++.++.||.|||-.-+
T Consensus 245 ~I~pq~lkpg~~ivD~g~P 263 (351)
T COG5322 245 EIFPQHLKPGCLIVDGGYP 263 (351)
T ss_pred eechhhccCCeEEEcCCcC
Confidence 6788999999999996543
No 137
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.92 E-value=0.013 Score=58.41 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=55.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe-ecCc-cCCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTE-DSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~-~~~~-~~~~~~DvVf~a~~~~~s~~~ 117 (376)
.||+|+|. |.+|..+.+.|..+++ .+.+ ...+..........+..+.-. ..+. +...++|+||+|+|.....++
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~-~v~i--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~v 76 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP-DVFI--IGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAAL 76 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC-CeEE--EEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHH
Confidence 36999998 9999999999987643 3333 221111111000000001000 0111 224689999999999888887
Q ss_pred HHHHHh----CCCeEEEcCCC
Q 017153 118 GPIAVE----KGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~~----~G~~VIDlS~~ 134 (376)
..++.+ .|+.|.|.++-
T Consensus 77 l~~l~~~~l~~~~ivtDv~Sv 97 (359)
T PRK06545 77 LAELADLELKPGVIVTDVGSV 97 (359)
T ss_pred HHHHhhcCCCCCcEEEeCccc
Confidence 777653 47889898875
No 138
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.89 E-value=0.051 Score=45.39 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=49.6
Q ss_pred CEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe-ecCccCCCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~-~~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
.+|||+|+| +..|..+++.|.++ ..++..+..+. +.+ ....+. .+. +.-..+|+++.|+|.....
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~---G~~v~~Vnp~~---~~i----~G~~~y~sl~-e~p~~iDlavv~~~~~~~~ 69 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA---GYEVYPVNPKG---GEI----LGIKCYPSLA-EIPEPIDLAVVCVPPDKVP 69 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT---T-EEEEESTTC---SEE----TTEE-BSSGG-GCSST-SEEEE-S-HHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC---CCEEEEECCCc---eEE----CcEEeecccc-CCCCCCCEEEEEcCHHHHH
Confidence 379999987 77899999999885 35777665322 111 112332 222 2236889999999999999
Q ss_pred hhHHHHHhCCCeEE
Q 017153 116 KFGPIAVEKGSIVV 129 (376)
Q Consensus 116 ~~~~~~~~~G~~VI 129 (376)
++.+++.+.|++-+
T Consensus 70 ~~v~~~~~~g~~~v 83 (116)
T PF13380_consen 70 EIVDEAAALGVKAV 83 (116)
T ss_dssp HHHHHHHHHT-SEE
T ss_pred HHHHHHHHcCCCEE
Confidence 99999998888733
No 139
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.88 E-value=0.038 Score=54.30 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=26.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||.|.|||||+|+.|++.|.++ ...++.++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~--~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILET--TDWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhC--CCCeEEEEe
Confidence 68999999999999999999865 334676664
No 140
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=95.87 E-value=0.012 Score=57.19 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=55.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc----CCCCCcEEEEcCCCchh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED----SFDGVDIALFSAGGSIS 114 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~----~~~~~DvVf~a~~~~~s 114 (376)
|||+|+|. |..|..+.+.|.+++ .++.+. +++.. -+.+...+ .... .+++ .+..+|+||+|+|....
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g---~~V~~~-dr~~~~~~~l~~~g--~~~~-~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRG---HDCVGY-DHDQDAVKAMKEDR--TTGV-ANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCC---CEEEEE-ECCHHHHHHHHHcC--Cccc-CCHHHHHhhcCCCCEEEEEcCchHH
Confidence 48999998 999999999998864 456543 33211 11111111 1111 1111 23568999999999876
Q ss_pred hhhHHHHH---hCCCeEEEcCCCC
Q 017153 115 KKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
.+....+. ..|..|||.|...
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCC
Confidence 66665553 4688899998765
No 141
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.86 E-value=0.012 Score=57.35 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce-eeecCcceEEeecC--ccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~-~~~~~~~~~v~~~~--~~~~~~~DvVf~a~~~~~s~ 115 (376)
..||+|+|+ |.+|+.+++.|... . .++.++. ++..... ....+ .....++ .+.+.++|+||.|+|.....
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~--G-a~V~v~~-r~~~~~~~~~~~G--~~~~~~~~l~~~l~~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKAL--G-ANVTVGA-RKSAHLARITEMG--LSPFHLSELAEEVGKIDIIFNTIPALVLT 224 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHC--C-CEEEEEE-CCHHHHHHHHHcC--CeeecHHHHHHHhCCCCEEEECCChhhhh
Confidence 479999998 99999999999876 3 4665443 3311110 00001 1111111 22347899999999876432
Q ss_pred hhHHHHHhCCCeEEEcCCCC
Q 017153 116 KFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~~ 135 (376)
+-.-.....|..|||+++.-
T Consensus 225 ~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 225 KEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred HHHHHcCCCCcEEEEEccCC
Confidence 21112245789999999864
No 142
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.84 E-value=0.017 Score=56.48 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecC--ccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~--~~~~~~~DvVf~a~~~~~s~ 115 (376)
.++|+|+|+ |.+|+.+++.|..+ ...++. +.+++.. ...+...... .+...+ .+.+.++|+||+|++.....
T Consensus 178 ~~~V~ViGa-G~iG~~~a~~L~~~--g~~~V~-v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~~~ 252 (311)
T cd05213 178 GKKVLVIGA-GEMGELAAKHLAAK--GVAEIT-IANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPHYA 252 (311)
T ss_pred CCEEEEECc-HHHHHHHHHHHHHc--CCCEEE-EEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCchH
Confidence 489999998 99999999998874 223443 4443321 1111111001 121111 12246799999999987764
Q ss_pred hhHHHHHh----CCCeEEEcCCC
Q 017153 116 KFGPIAVE----KGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~~----~G~~VIDlS~~ 134 (376)
+....+.+ .+..+||++-+
T Consensus 253 ~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 253 KIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred HHHHHHHhhCCCCCeEEEEeCCC
Confidence 43443332 36789999965
No 143
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.83 E-value=0.015 Score=59.08 Aligned_cols=89 Identities=17% Similarity=0.265 Sum_probs=52.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec-------C-----------cceEEeecCcc-CCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-------D-----------KAYTVEELTED-SFD 100 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~-------~-----------~~~~v~~~~~~-~~~ 100 (376)
|||+|+|. |++|..+...|.+++| ++..+......-+.+..+ + ..+... .+.. .+.
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~---~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH---EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAIR 75 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC---eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHHh
Confidence 58999998 9999999999988654 555443221111111100 0 012222 1222 357
Q ss_pred CCcEEEEcCCCchh----------hhhHHHH---HhCCCeEEEcCC
Q 017153 101 GVDIALFSAGGSIS----------KKFGPIA---VEKGSIVVDNSS 133 (376)
Q Consensus 101 ~~DvVf~a~~~~~s----------~~~~~~~---~~~G~~VIDlS~ 133 (376)
++|+||.|+|+... ......+ +..|..|||.|.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST 121 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 89999999997642 2222222 356888999874
No 144
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.83 E-value=0.014 Score=57.31 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=56.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec--------Ccce--EEee-cCc-cCCCCCcEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ--------DKAY--TVEE-LTE-DSFDGVDIAL 106 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~--------~~~~--~v~~-~~~-~~~~~~DvVf 106 (376)
+|||+|+|+ |.+|..+...|...+| ++..+..+...-+.+... +..+ .+.. .++ +...++|+||
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~---~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV---PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAV 79 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEE
Confidence 479999998 9999999999987644 454443221111111100 1000 0111 122 2246899999
Q ss_pred EcCCCchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 107 FSAGGSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+|++.....+..+.+ ..++.+||++.-+
T Consensus 80 ~~v~~~~~~~v~~~l-~~~~~vi~~~~Gi 107 (328)
T PRK14618 80 VAVPSKALRETLAGL-PRALGYVSCAKGL 107 (328)
T ss_pred EECchHHHHHHHHhc-CcCCEEEEEeecc
Confidence 999999776665543 4678899888754
No 145
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.77 E-value=0.012 Score=57.04 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceee-ecCcceEEeecCccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~-~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
..+|+|+|+ |.+|+.+++.|...+ .++.+. +++... .... .+.......++ .+.+.++|+||.|+|...-.+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G---~~V~v~-~R~~~~~~~~~~~g~~~~~~~~l-~~~l~~aDiVint~P~~ii~~ 224 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALG---ARVFVG-ARSSADLARITEMGLIPFPLNKL-EEKVAEIDIVINTIPALVLTA 224 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCC---CEEEEE-eCCHHHHHHHHHCCCeeecHHHH-HHHhccCCEEEECCChHHhCH
Confidence 379999999 999999999998763 365544 332210 0000 01011111111 123478999999999865322
Q ss_pred hHHHHHhCCCeEEEcCCCC
Q 017153 117 FGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~ 135 (376)
..-...+.++.+||+++.-
T Consensus 225 ~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 225 DVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HHHhcCCCCeEEEEeCcCC
Confidence 2222345689999999864
No 146
>PRK06813 homoserine dehydrogenase; Validated
Probab=95.75 E-value=0.026 Score=56.19 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=55.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-------CCCeEEEEEecCCCC-----Cceeee----cCcceEE---eecCccCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSA-----GKQLSF----QDKAYTV---EELTEDSF 99 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-------~p~~~l~~v~s~~~~-----g~~~~~----~~~~~~v---~~~~~~~~ 99 (376)
+++|+|+|. |.||+.++++|.++. --+++++.++.++.. |-.+.. ....... ...+++++
T Consensus 2 ~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 589999998 999999999986541 024677776543211 111000 0000000 01111111
Q ss_pred ----CCCcEEEEcCCC-----chhhhhHHHHHhCCCeEEE
Q 017153 100 ----DGVDIALFSAGG-----SISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 100 ----~~~DvVf~a~~~-----~~s~~~~~~~~~~G~~VID 130 (376)
.+.|||++|+++ +.+..+.++++++|+.||-
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVT 120 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVA 120 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEc
Confidence 157999999875 4577888899999999994
No 147
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.72 E-value=0.014 Score=59.46 Aligned_cols=89 Identities=13% Similarity=0.194 Sum_probs=52.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC------------------cceEEeecCccCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD------------------KAYTVEELTEDSFD 100 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~------------------~~~~v~~~~~~~~~ 100 (376)
++||+|+|. ||+|..+...|.+++| ++..+......-..+..+. ..+... ....
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~---~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~----~~~~ 74 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK---QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT----TTPE 74 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC---EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee----cccc
Confidence 479999998 9999999999998744 5555432111000111000 001111 1234
Q ss_pred CCcEEEEcCCCc----------hhhhhHHH---HHhCCCeEEEcCCCC
Q 017153 101 GVDIALFSAGGS----------ISKKFGPI---AVEKGSIVVDNSSAF 135 (376)
Q Consensus 101 ~~DvVf~a~~~~----------~s~~~~~~---~~~~G~~VIDlS~~~ 135 (376)
++|++|.|+|.. ...+.... .+..|..||+.|.-.
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 799999999984 22222222 235688899988743
No 148
>PRK12320 hypothetical protein; Provisional
Probab=95.70 E-value=0.071 Score=57.72 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=53.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecC-c---cCCCCCcEEEEcCCCch
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELT-E---DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~-~---~~~~~~DvVf~a~~~~~ 113 (376)
|||.|.|+||++|+.|++.|.+++| ++.++...... .. . ..+.+. ++. + +.+.++|+||.+.+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~---~Vi~ldr~~~~--~~-~--~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH---TVSGIAQHPHD--AL-D--PRVDYVCASLRNPVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCChhh--cc-c--CCceEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence 5899999999999999999987643 66655432111 00 0 111121 111 1 12357999999886432
Q ss_pred ----------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 114 ----------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 114 ----------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+...+..+.+.|+++|-+|+..
T Consensus 73 ~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~~ 104 (699)
T PRK12320 73 SAPGGVGITGLAHVANAAARAGARLLFVSQAA 104 (699)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 2223344556788988888763
No 149
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.69 E-value=0.14 Score=49.01 Aligned_cols=142 Identities=17% Similarity=0.214 Sum_probs=78.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc----------eeeecC-----------cceEEeecCcc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK----------QLSFQD-----------KAYTVEELTED 97 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~----------~~~~~~-----------~~~~v~~~~~~ 97 (376)
.||+|+|+ |++|..+...|..+++ ++..+... +...+ .+...+ ..+.+. .+.+
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~---~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~ 78 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGY---DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLD 78 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCC---ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 58999999 9999999999988744 55544211 11100 000000 012222 1233
Q ss_pred CCCCCcEEEEcCCCchh--hhhHHHHH---hCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCCCc
Q 017153 98 SFDGVDIALFSAGGSIS--KKFGPIAV---EKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGKGA 164 (376)
Q Consensus 98 ~~~~~DvVf~a~~~~~s--~~~~~~~~---~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~~~ 164 (376)
.+.++|+||.|.+.... .+...++. ..++.++.+++...... +--.++-..|+..+.. ...
T Consensus 79 ~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~------~ve 152 (282)
T PRK05808 79 DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMK------LVE 152 (282)
T ss_pred HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCc------cEE
Confidence 46789999999986554 44555443 35677777777765432 0113344444433332 233
Q ss_pred EEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 165 LIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 165 iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
++..+++...... .+..|.+..|...+.
T Consensus 153 v~~g~~t~~e~~~-~~~~l~~~lGk~pv~ 180 (282)
T PRK05808 153 IIRGLATSDATHE-AVEALAKKIGKTPVE 180 (282)
T ss_pred EeCCCCCCHHHHH-HHHHHHHHcCCeeEE
Confidence 5556666555544 466777776655443
No 150
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.65 E-value=0.035 Score=53.36 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=54.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC-----cceEE--eec-CccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-----KAYTV--EEL-TEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~-----~~~~v--~~~-~~~~~~~~DvVf~a~~~ 111 (376)
|||+|+|+ |.+|..+...|.+.+| ++..+..+...-+.+...+ ..... ... +.....++|+||+|++.
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH---DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKA 76 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccc
Confidence 58999998 9999999999987643 5555543111100111001 01111 111 12223689999999998
Q ss_pred chhhhhHHHHHh---CCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
....+..+.+.. .+..||.+...+
T Consensus 77 ~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 77 YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 877777666543 456777766554
No 151
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.63 E-value=0.064 Score=52.10 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=61.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CC--CcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DG--VDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~--~DvVf~a~~~~~s~ 115 (376)
+-||.|.|.||-.|..+++.|.+.+++ .+..+. ++..+..+ ..+++++ +.+++ .. +|+++.|+|.....
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~--~v~pVn-p~~~~~~v----~G~~~y~-sv~dlp~~~~~DlAvi~vp~~~v~ 79 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN--IVGGVT-PGKGGTTV----LGLPVFN-TVAEAVEATGANASVIYVPPPFAA 79 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC--EEEEEC-CCCCCCeE----eCeeccC-CHHHHhhccCCCEEEEEcCHHHHH
Confidence 579999999999999999999876443 444444 33111121 1233322 12223 33 89999999999999
Q ss_pred hhHHHHHhCCCe-EEEcCCCCC
Q 017153 116 KFGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 116 ~~~~~~~~~G~~-VIDlS~~~R 136 (376)
+..+++.++|++ +|-.|+-|.
T Consensus 80 ~~l~e~~~~gvk~avI~s~Gf~ 101 (291)
T PRK05678 80 DAILEAIDAGIDLIVCITEGIP 101 (291)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
Confidence 999999999987 455787774
No 152
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.58 E-value=0.043 Score=50.52 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=55.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeeecCcceEEe--ecCccCCCCCcEEEEcCCCc-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGS-I 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~~~~~~~v~--~~~~~~~~~~DvVf~a~~~~-~ 113 (376)
..||.|+|+ |.+|..-++.|.+. ..++.+++ ++.... .+... ..+.+. +....++.++|+||.|++.. .
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~---ga~VtVvs-p~~~~~l~~l~~~-~~i~~~~~~~~~~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKA---GAQLRVIA-EELESELTLLAEQ-GGITWLARCFDADILEGAFLVIAATDDEEL 82 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHC---CCEEEEEc-CCCCHHHHHHHHc-CCEEEEeCCCCHHHhCCcEEEEECCCCHHH
Confidence 369999999 99999999998875 34565454 322111 11111 123332 33344578999999999986 6
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
.......+.+.|+.|-
T Consensus 83 n~~i~~~a~~~~ilvn 98 (205)
T TIGR01470 83 NRRVAHAARARGVPVN 98 (205)
T ss_pred HHHHHHHHHHcCCEEE
Confidence 6666667777888873
No 153
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.54 E-value=0.014 Score=56.69 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=52.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-hh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~~ 116 (376)
.||+|+|. |.+|..+.+.|.+++| ++.+ .+++.. -+.+... ..... .++. ...++|+||+|+|.... .+
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~---~V~v-~d~~~~~~~~~~~~--g~~~~-~s~~~~~~~aDvVi~~vp~~~~~~~ 73 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGH---QLQV-FDVNPQAVDALVDK--GATPA-ASPAQAAAGAEFVITMLPNGDLVRS 73 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCC---eEEE-EcCCHHHHHHHHHc--CCccc-CCHHHHHhcCCEEEEecCCHHHHHH
Confidence 48999998 9999999999988743 5543 333211 0111111 11111 1222 24689999999999753 22
Q ss_pred hHH---H---HHhCCCeEEEcCCCC
Q 017153 117 FGP---I---AVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~---~---~~~~G~~VIDlS~~~ 135 (376)
... . ....|..+||.|.-.
T Consensus 74 vl~~~~~i~~~l~~g~lvid~sT~~ 98 (296)
T PRK15461 74 VLFGENGVCEGLSRDALVIDMSTIH 98 (296)
T ss_pred HHcCcccHhhcCCCCCEEEECCCCC
Confidence 211 1 124678899998765
No 154
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.50 E-value=0.072 Score=51.63 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=61.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-C--CCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-D--GVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~--~~DvVf~a~~~~~s~ 115 (376)
+-||.|.|.||..|..+++.|...+++ +++-.+++..+..+ ..+++++ +.+++ . ++|+++.|.|.....
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~---~v~~V~p~~~~~~v----~G~~~y~-sv~dlp~~~~~Dlavi~vpa~~v~ 77 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN---IVGGVTPGKGGTTV----LGLPVFD-SVKEAVEETGANASVIFVPAPFAA 77 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC---EEEEECCCCCccee----cCeeccC-CHHHHhhccCCCEEEEecCHHHHH
Confidence 578999999999999999988776443 55444443111121 1233322 12222 2 379999999999999
Q ss_pred hhHHHHHhCCCe-EEEcCCCCC
Q 017153 116 KFGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 116 ~~~~~~~~~G~~-VIDlS~~~R 136 (376)
+...++.++|++ +|-+|+-|.
T Consensus 78 ~~l~e~~~~Gvk~avIis~Gf~ 99 (286)
T TIGR01019 78 DAIFEAIDAGIELIVCITEGIP 99 (286)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
Confidence 999999999987 445777773
No 155
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.47 E-value=0.019 Score=55.69 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=53.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCC-C---CCcEEEEcCCCc-h
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSF-D---GVDIALFSAGGS-I 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~-~---~~DvVf~a~~~~-~ 113 (376)
|||+|||. |.+|..+.+.|.+++ .++.+ .+++. .-+.+... ...... +++++ . ++|+||.|+|.. .
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g---~~v~v-~dr~~~~~~~~~~~--g~~~~~-s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDG---HEVVG-YDVNQEAVDVAGKL--GITARH-SLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCC---CEEEE-EECCHHHHHHHHHC--CCeecC-CHHHHHHhCCCCCEEEEEecCchH
Confidence 47999998 999999999998763 45554 33321 11111111 111211 22222 2 379999999997 5
Q ss_pred hhhhHHHHH---hCCCeEEEcCCCC
Q 017153 114 SKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 114 s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
..+....+. ..|..|||+|...
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCC
Confidence 555555443 4678899997653
No 156
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.46 E-value=0.021 Score=56.01 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=58.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceeeec------CcceE----Ee-ecCc-cCCCCCcEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQ------DKAYT----VE-ELTE-DSFDGVDIAL 106 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~~~------~~~~~----v~-~~~~-~~~~~~DvVf 106 (376)
+||+|+|+ |-.|..|...|.+++| ++. +.+++ ..-..+... ..++. +. ..|. +.++++|+++
T Consensus 2 ~kI~ViGa-GswGTALA~~la~ng~---~V~-lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv 76 (329)
T COG0240 2 MKIAVIGA-GSWGTALAKVLARNGH---EVR-LWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIV 76 (329)
T ss_pred ceEEEEcC-ChHHHHHHHHHHhcCC---eeE-EEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEE
Confidence 78999999 9999999999998754 333 22222 100011100 01111 11 1122 2246799999
Q ss_pred EcCCCchhhhhHHHHH---hCCCeEEEcCCCCC
Q 017153 107 FSAGGSISKKFGPIAV---EKGSIVVDNSSAFR 136 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~R 136 (376)
+++|+..-+++++++. ..+.++|.++--+-
T Consensus 77 ~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie 109 (329)
T COG0240 77 IAVPSQALREVLRQLKPLLLKDAIIVSATKGLE 109 (329)
T ss_pred EECChHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence 9999999988888763 67888998887763
No 157
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.42 E-value=0.044 Score=53.99 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=44.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCCC----CCceeeecC------cceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQD------KAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~~----~g~~~~~~~------~~~~v~~~~~~~~~~~Dv 104 (376)
++||+|+||+|.+|..++-.|..++. ...+++++--... .|....... ....+..-+.+++.++|+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 47999999999999999998876521 1236776643222 222211100 123333323456789999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
|+.+.+.
T Consensus 82 vvitaG~ 88 (322)
T cd01338 82 ALLVGAK 88 (322)
T ss_pred EEEeCCC
Confidence 9988766
No 158
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=95.38 E-value=0.043 Score=52.88 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=48.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-ccC-C--CCCcEEEEcCCCc---
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDS-F--DGVDIALFSAGGS--- 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-~~~-~--~~~DvVf~a~~~~--- 112 (376)
|||.|+|++|++|+.|.+.|.++ ..++... ++.. +.+.+.+ ... + .+.|+||.|..-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~---~~~v~~~-~r~~-----------~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER---GYEVIAT-SRSD-----------LDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT---SEEEEEE-STTC-----------S-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhC---CCEEEEe-Cchh-----------cCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 79999999999999999999875 4566555 3321 0011000 001 1 2568999886431
Q ss_pred ---------------hhhhhHHHHHhCCCeEEEcCCCCCCCC
Q 017153 113 ---------------ISKKFGPIAVEKGSIVVDNSSAFRMVE 139 (376)
Q Consensus 113 ---------------~s~~~~~~~~~~G~~VIDlS~~~R~~~ 139 (376)
....+++.+.+.|+++|-+|+++=|+.
T Consensus 66 ~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG 107 (286)
T PF04321_consen 66 ACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDG 107 (286)
T ss_dssp HHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S
T ss_pred hhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcC
Confidence 112233444568999999999976654
No 159
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.32 E-value=0.017 Score=52.25 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-----cCcceEEeec-Cc----cCCCCCcEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-----QDKAYTVEEL-TE----DSFDGVDIALF 107 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-----~~~~~~v~~~-~~----~~~~~~DvVf~ 107 (376)
..++.|+|+||.+|+.+++.|..+ . .++..+ +++.. .+.+.. .+..+...+. +. +.+.++|+||.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~--g-~~V~l~-~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE--G-ARVVLV-GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--C-CEEEEE-cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 479999999999999999999875 2 355544 44311 011100 0111111111 21 22468999999
Q ss_pred cCCCchhh-hhHHHHHhCCCeEEEcCCCC
Q 017153 108 SAGGSISK-KFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 108 a~~~~~s~-~~~~~~~~~G~~VIDlS~~~ 135 (376)
|++.+... ...+...+.+..|+|+....
T Consensus 104 at~~g~~~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 104 AGAAGVELLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred CCCCCceechhhhcccCceeEEEEccCCC
Confidence 99987731 11122223477899987653
No 160
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.29 E-value=0.095 Score=44.90 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=54.8
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC---------------CCCCceeee--------cCcceEEee----
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLSF--------QDKAYTVEE---- 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~---------------~~~g~~~~~--------~~~~~~v~~---- 93 (376)
||.|+|+ |-+|.++++.|...+. -++..+-.. +..|++-.. ....+.+..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv--~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV--GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC--CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 5899999 9999999999987633 344444211 112221110 011222221
Q ss_pred cCc----cCCCCCcEEEEcCCCchhhhhHH-HHHhCCCeEEEcCCC
Q 017153 94 LTE----DSFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNSSA 134 (376)
Q Consensus 94 ~~~----~~~~~~DvVf~a~~~~~s~~~~~-~~~~~G~~VIDlS~~ 134 (376)
.+. +.+.+.|+||+|+....+..... .+.+.|+.+|+....
T Consensus 78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 22478999999999876655444 445789999987654
No 161
>PRK05086 malate dehydrogenase; Provisional
Probab=95.25 E-value=0.058 Score=52.91 Aligned_cols=71 Identities=24% Similarity=0.447 Sum_probs=41.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCC-CCCceeeecC-c-ceEEee--c-C-ccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKR-SAGKQLSFQD-K-AYTVEE--L-T-EDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~-~~g~~~~~~~-~-~~~v~~--~-~-~~~~~~~DvVf~a~~~ 111 (376)
|||+|+||||.+|..++..|... .+. .+++++.... ..|..+.... . ...+.. . + .+++.++|+||.|.+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~-~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ-LPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 68999999999999999877542 133 3455443221 1121111111 1 123332 1 2 2456789999999886
No 162
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.18 E-value=0.016 Score=55.89 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=50.0
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhhhH-
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFG- 118 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~~- 118 (376)
||+|+|. |.+|..+.+.|.+++| ++.+. +++. .+.-.......... .++ +...++|+||+|+|.....+.+
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~---~V~~~-dr~~-~~~~~~~~~g~~~~-~~~~~~~~~aDivi~~vp~~~~~~~v~ 73 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY---QLHVT-TIGP-EVADELLAAGAVTA-ETARQVTEQADVIFTMVPDSPQVEEVA 73 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC---eEEEE-cCCH-HHHHHHHHCCCccc-CCHHHHHhcCCEEEEecCCHHHHHHHH
Confidence 5899998 9999999999988644 55533 3321 11000000011111 122 2346899999999976432221
Q ss_pred ---H---HHHhCCCeEEEcCCC
Q 017153 119 ---P---IAVEKGSIVVDNSSA 134 (376)
Q Consensus 119 ---~---~~~~~G~~VIDlS~~ 134 (376)
. .....|..|||.|..
T Consensus 74 ~~~~~~~~~~~~g~iivd~st~ 95 (291)
T TIGR01505 74 FGENGIIEGAKPGKTLVDMSSI 95 (291)
T ss_pred cCcchHhhcCCCCCEEEECCCC
Confidence 1 112457889998764
No 163
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.14 E-value=0.14 Score=47.05 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEEe--ecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVE--ELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v~--~~~~~~~~~~DvVf~a~~~~~s 114 (376)
..+|.|+|+ |-+|...++.|.+.+ .++.+++ +... ..+.. ....+.+. .+.+.++.++|+||.|++....
T Consensus 10 ~k~vLVIGg-G~va~~ka~~Ll~~g---a~V~VIs-~~~~-~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 10 NKRVVIVGG-GKVAGRRAITLLKYG---AHIVVIS-PELT-ENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEc-CCCC-HHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 479999999 999999999888763 4666553 3221 11111 00123332 2334557899999999988765
Q ss_pred hhhHHHHHhCCCeE
Q 017153 115 KKFGPIAVEKGSIV 128 (376)
Q Consensus 115 ~~~~~~~~~~G~~V 128 (376)
-+......+++..|
T Consensus 84 N~~i~~~a~~~~lv 97 (202)
T PRK06718 84 NEQVKEDLPENALF 97 (202)
T ss_pred HHHHHHHHHhCCcE
Confidence 55555555666543
No 164
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.14 E-value=0.03 Score=54.37 Aligned_cols=88 Identities=14% Similarity=0.231 Sum_probs=52.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCC-C---CCcEEEEcCCCc-h
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSF-D---GVDIALFSAGGS-I 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~-~---~~DvVf~a~~~~-~ 113 (376)
|||+|+|. |..|..+.+.|.+.+ .++.+. +++. .-+.+... ...+.. +++++ . ++|+||.|+|.. .
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g---~~v~v~-dr~~~~~~~~~~~--g~~~~~-~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGG---HEVVGY-DRNPEAVEALAEE--GATGAD-SLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCC---CeEEEE-ECCHHHHHHHHHC--CCeecC-CHHHHHhhcCCCCEEEEEecCCcH
Confidence 48999998 999999999998764 355443 3321 11111111 112211 22222 2 469999999987 4
Q ss_pred hhhhHHHHH---hCCCeEEEcCCCC
Q 017153 114 SKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 114 s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
..+....+. ..|..+||.|...
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 455544443 4578899997654
No 165
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.09 E-value=0.065 Score=51.65 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=54.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cc---ee----ee---c------------CcceEEeecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---QL----SF---Q------------DKAYTVEELT 95 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~---~~----~~---~------------~~~~~v~~~~ 95 (376)
.||+|+|+ |.+|..+...|+.+++ ++..+. ++.. .+ .+ .. . ...+.+. .+
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~---~V~l~d-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d 77 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGF---DVTIYD-ISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TD 77 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCC---eEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CC
Confidence 68999998 9999999999987644 454443 2210 00 00 00 0 0112222 12
Q ss_pred cc-CCCCCcEEEEcCCCch--hhhhHHHH---HhCCCeEEEcCCCCCC
Q 017153 96 ED-SFDGVDIALFSAGGSI--SKKFGPIA---VEKGSIVVDNSSAFRM 137 (376)
Q Consensus 96 ~~-~~~~~DvVf~a~~~~~--s~~~~~~~---~~~G~~VIDlS~~~R~ 137 (376)
.+ .+.++|+||+|.|... -.++..++ ...++.++++++.+..
T Consensus 78 ~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~ 125 (287)
T PRK08293 78 LAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP 125 (287)
T ss_pred HHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH
Confidence 22 3579999999999763 33333333 3456777788888754
No 166
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=95.06 E-value=0.094 Score=49.53 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=37.9
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
|.|.||||++|..|++.|.+. ..++.++........... .....+. .....+.+.++|+||.|.+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD---GHEVTILTRSPPAGANTKWEGYKPWA-PLAESEALEGADAVINLAGE 67 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc---CCEEEEEeCCCCCCCcccceeeeccc-ccchhhhcCCCCEEEECCCC
Confidence 468999999999999999875 347776653221111110 0000000 00112235689999988864
No 167
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.06 E-value=0.057 Score=53.27 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=43.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCC----CCCceeee------cCcceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKR----SAGKQLSF------QDKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~----~~g~~~~~------~~~~~~v~~~~~~~~~~~Dv 104 (376)
++||+|+||+|.+|..++-.|...+. ...+++.+--.. ..|..... ...+..+..-+.+++.++|+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 58999999999999999988876622 112676664322 12221110 00122333223456789999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
|+.+.|.
T Consensus 83 VVitAG~ 89 (323)
T TIGR01759 83 ALLVGAF 89 (323)
T ss_pred EEEeCCC
Confidence 9888765
No 168
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.11 Score=50.35 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=61.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|+|+|.+|.+|+-+..+|.++ ...+....++. . ++. ....+|+||.|+|.... .
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~---gatVtv~~s~t----------~-------~l~~~~~~ADIVI~avg~~~~--v 215 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDK---NATVTLTHSRT----------R-------NLAEVARKADILVVAIGRGHF--V 215 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHC---CCEEEEECCCC----------C-------CHHHHHhhCCEEEEecCcccc--C
Confidence 489999999999999999999875 34554332211 0 122 24689999999987544 2
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
-+.+.+.|+.|||.+-.+- .++ -.+-.++.+.++.
T Consensus 216 ~~~~ik~GavVIDvgin~~-~~g--kl~GDVdf~~v~~ 250 (284)
T PRK14179 216 TKEFVKEGAVVIDVGMNRD-ENG--KLIGDVDFDEVAE 250 (284)
T ss_pred CHHHccCCcEEEEecceec-CCC--CeecCccHHHHHh
Confidence 3445788999999986642 121 2455667666653
No 169
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=95.03 E-value=0.13 Score=55.43 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+||.|.|||||+|+.|++.|.++ ...+++++.
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~--~g~~V~~l~ 347 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRD--DNYEVYGLD 347 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhC--CCcEEEEEe
Confidence 579999999999999999999875 245777664
No 170
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.94 E-value=0.16 Score=48.98 Aligned_cols=142 Identities=14% Similarity=0.147 Sum_probs=73.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee--------ec---C-----------cceEEeecCc-
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------FQ---D-----------KAYTVEELTE- 96 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~--------~~---~-----------~~~~v~~~~~- 96 (376)
.||+|+|+ |.+|..+...|..++| ++.++......-+... .+ + ..+.... +.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~ 76 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF---QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL-DLK 76 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-cHH
Confidence 57999999 9999999999987644 4544422111000000 00 0 0122221 22
Q ss_pred cCCCCCcEEEEcCCCchhh--hhHHH---HHhCCCeEEEcCCCCCCCC-----CCc---EEeeccCHHhhcCcccCCCCC
Q 017153 97 DSFDGVDIALFSAGGSISK--KFGPI---AVEKGSIVVDNSSAFRMVE-----NVP---LVIPEVNPEAMSGIKVGMGKG 163 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~--~~~~~---~~~~G~~VIDlS~~~R~~~-----~~~---~~lpevN~~~i~~~~~~~~~~ 163 (376)
+.+.++|+||+|+|..... .+..+ ....++.+..+++.+.... ..+ .++--+|+-.... -.
T Consensus 77 ~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~------Lv 150 (288)
T PRK09260 77 AAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMK------LV 150 (288)
T ss_pred HhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCc------eE
Confidence 3467999999999987642 22222 2345666655666664321 011 2333334332211 12
Q ss_pred cEEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 164 ALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 164 ~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
-+|..+.+..-. .-.+.++.+..+-..+.
T Consensus 151 e~v~g~~t~~~~-~~~~~~~l~~lg~~~v~ 179 (288)
T PRK09260 151 ELIRGLETSDET-VQVAKEVAEQMGKETVV 179 (288)
T ss_pred EEeCCCCCCHHH-HHHHHHHHHHcCCeEEE
Confidence 344444444444 45577888876644333
No 171
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=94.86 E-value=0.034 Score=53.92 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=51.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~~ 117 (376)
|||+|||. |..|..+.+.|.+.+| ++.+. +++...+.+... ...... ++.+ ..++|+||+|++.... .+.
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~---~v~v~-~~~~~~~~~~~~--g~~~~~-s~~~~~~~advVi~~v~~~~~v~~v 72 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH---QLHVT-TIGPVADELLSL--GAVSVE-TARQVTEASDIIFIMVPDTPQVEEV 72 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC---eEEEE-eCCHhHHHHHHc--CCeecC-CHHHHHhcCCEEEEeCCChHHHHHH
Confidence 47999997 9999999999988644 45433 222111111111 111111 2223 3689999999998743 222
Q ss_pred H------HHHHhCCCeEEEcCCCC
Q 017153 118 G------PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~------~~~~~~G~~VIDlS~~~ 135 (376)
. ......|..|||+|..-
T Consensus 73 ~~~~~g~~~~~~~g~ivvd~sT~~ 96 (292)
T PRK15059 73 LFGENGCTKASLKGKTIVDMSSIS 96 (292)
T ss_pred HcCCcchhccCCCCCEEEECCCCC
Confidence 1 01124577899998653
No 172
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.81 E-value=0.1 Score=51.22 Aligned_cols=71 Identities=20% Similarity=0.334 Sum_probs=44.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEEee--cC---ccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVEE--LT---EDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v~~--~~---~~~~~~~DvVf~a~~~ 111 (376)
|||+|+|+||.||..++-.|..++. ..|++.+--....|..... ......+.. .+ .+++.++|+|+.+.+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 6899999999999999998887632 2466655322333332211 111223332 22 3567899999998776
No 173
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.79 E-value=0.17 Score=50.80 Aligned_cols=104 Identities=14% Similarity=0.243 Sum_probs=62.6
Q ss_pred ceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCC----CeEEEEEecCCCC--Ccee----eec--------C--
Q 017153 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKRSA--GKQL----SFQ--------D-- 86 (376)
Q Consensus 27 ~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p----~~~l~~v~s~~~~--g~~~----~~~--------~-- 86 (376)
.|..++-. ++||+|+|+ |-.|..|...|.+++.. .-++.. ..++.. ++.+ ... +
T Consensus 3 ~~~~~~~~----~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~N~~ylp~~~ 76 (365)
T PTZ00345 3 LFQKLRCG----PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRM-WVLEEIVEGEKLSDIINTKHENVKYLPGIK 76 (365)
T ss_pred chhhcccC----CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEE-EEecccccchHHHHHHHhcCCCcccCCCCc
Confidence 45555533 589999998 99999999999876310 023332 222221 1111 000 0
Q ss_pred --cceEEeecCc-cCCCCCcEEEEcCCCchhhhhHHHHHh-----CCCeEEEcCCCCCC
Q 017153 87 --KAYTVEELTE-DSFDGVDIALFSAGGSISKKFGPIAVE-----KGSIVVDNSSAFRM 137 (376)
Q Consensus 87 --~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~~~~~~~-----~G~~VIDlS~~~R~ 137 (376)
.++.... |. +...++|++++|+|+...++...++.+ .+..+|.++.-+-.
T Consensus 77 Lp~ni~~ts-dl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 77 LPDNIVAVS-DLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred CCCceEEec-CHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 1122221 22 235789999999999998888887654 24568888877744
No 174
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.72 E-value=0.21 Score=44.23 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=68.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCc--hhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~--~s~~ 116 (376)
.++|.|+|.++.+|+-|..+|.++ +..+...-+.. +++ .+....+|+|+.|.|.. ...+
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~---~atVt~~h~~T----------~~l------~~~~~~ADIVVsa~G~~~~i~~~ 96 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNK---GATVTICHSKT----------KNL------QEITRRADIVVSAVGKPNLIKAD 96 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHT---T-EEEEE-TTS----------SSH------HHHHTTSSEEEE-SSSTT-B-GG
T ss_pred CCEEEEECCcCCCChHHHHHHHhC---CCeEEeccCCC----------Ccc------cceeeeccEEeeeeccccccccc
Confidence 479999999999999999999885 45554332211 011 12236899999998763 2333
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEE-EcC-CchHHHHHHHHhHHHHh
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALI-ANP-NCSTIICLMAATPLHRR 186 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iV-a~P-gC~~ta~~l~L~pL~~~ 186 (376)
| .+.|+.|||.+-.+= ....-.+..++.+.++. .+..| ..| |.-+..+++.++-+.+.
T Consensus 97 ~----ik~gavVIDvG~~~~--~~~~~~~GDv~~~~~~~------~a~~itPvPgGVGplT~a~L~~N~v~a 156 (160)
T PF02882_consen 97 W----IKPGAVVIDVGINYV--PGDGKLVGDVDFESVKE------KASAITPVPGGVGPLTVAMLMKNLVKA 156 (160)
T ss_dssp G----S-TTEEEEE--CEEE--TTTTEEEESB-HHHHHT------TCSEEE-SSSSCHHHHHHHHHHHHHHH
T ss_pred c----ccCCcEEEecCCccc--cccceeeecccHHHhhc------cceEEeeCCCCccHHHHHHHHHHHHHH
Confidence 3 467999999987652 12234566777677764 34444 333 56676667766666553
No 175
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.70 E-value=0.075 Score=51.74 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=63.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|+|+|.+|.+|+-+.++|.+. ..++....++.. ++ .+....+|+||+|++... ...
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~---g~tVtv~~~rT~----------~l------~e~~~~ADIVIsavg~~~--~v~ 216 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAA---NATVTIAHSRTR----------DL------PAVCRRADILVAAVGRPE--MVK 216 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhC---CCEEEEECCCCC----------CH------HHHHhcCCEEEEecCChh--hcc
Confidence 589999999999999999999875 346654433321 00 122367999999999854 233
Q ss_pred HHHHhCCCeEEEcCCCCCCC--C---CCcEEeeccCHHhhcC
Q 017153 119 PIAVEKGSIVVDNSSAFRMV--E---NVPLVIPEVNPEAMSG 155 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~--~---~~~~~lpevN~~~i~~ 155 (376)
..++..|..|||.+-.+ .+ + +-.-.+-.++.+.++.
T Consensus 217 ~~~lk~GavVIDvGin~-~~~~~~~~g~~~l~GDvd~~~v~~ 257 (296)
T PRK14188 217 GDWIKPGATVIDVGINR-IPAPEKGEGKTRLVGDVAFAEAAE 257 (296)
T ss_pred hheecCCCEEEEcCCcc-cCCccccCCCceeeCCCCHHHHHh
Confidence 44577899999998764 22 1 1113567777676653
No 176
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.64 E-value=0.19 Score=48.70 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=61.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.++.+|+-|..+|.++ +..+....++. +++ .+....+|+|+.|+|..- -+-
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~---~atVt~~hs~t----------~~l------~~~~~~ADIVV~avG~~~--~i~ 216 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQA---GATVTICHSKT----------RDL------AAHTRQADIVVAAVGKRN--VLT 216 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEecCCC----------CCH------HHHhhhCCEEEEcCCCcC--ccC
Confidence 489999999999999999999865 34554332210 011 123468999999998642 233
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++.+..+.
T Consensus 217 ~~~ik~gavVIDVGin~-~~~g--kl~GDVd~~~v~~ 250 (285)
T PRK14189 217 ADMVKPGATVIDVGMNR-DDAG--KLCGDVDFAGVKE 250 (285)
T ss_pred HHHcCCCCEEEEccccc-cCCC--CeeCCccHHHHHh
Confidence 46678899999988764 2121 2455667666653
No 177
>PLN02214 cinnamoyl-CoA reductase
Probab=94.64 E-value=0.12 Score=50.84 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=26.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.|+||++|+.|++.|.++++ +++++.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~ 41 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY---TVKGTV 41 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEe
Confidence 46899999999999999999988743 565554
No 178
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.62 E-value=0.24 Score=47.67 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=53.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC------CCCceeeecCcceEEe--ec-CccC-CCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------SAGKQLSFQDKAYTVE--EL-TEDS-FDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~------~~g~~~~~~~~~~~v~--~~-~~~~-~~~~DvVf~a~ 109 (376)
|||+|+|+ |.+|..+...|.+++| ++..+.... ..|-.+.....+..+. .. +.++ ...+|++|.|+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR---DVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC---ceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 58999998 9999999999988644 444443211 1121111111111111 11 1222 36799999999
Q ss_pred CCchhhhhHHHHHh---CCCeEEEcCCCC
Q 017153 110 GGSISKKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 110 ~~~~s~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
++....+..+.+.. .+..||.+...+
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG~ 105 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNGI 105 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCCC
Confidence 98877776665543 456677665443
No 179
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.61 E-value=0.11 Score=51.28 Aligned_cols=93 Identities=14% Similarity=0.263 Sum_probs=60.3
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee---c--------------------CcceEEe
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---Q--------------------DKAYTVE 92 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~---~--------------------~~~~~v~ 92 (376)
.++++|||+||| |..|+-++.....- |.+++++++.++-.+...++ + ...+.+.
T Consensus 14 ~G~PiRVGlIGA-G~mG~~ivtQi~~m--~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT 90 (438)
T COG4091 14 EGKPIRVGLIGA-GEMGTGIVTQIASM--PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVT 90 (438)
T ss_pred cCCceEEEEecc-cccchHHHHHHhhc--CCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEe
Confidence 356799999999 99999999988876 99999998765432211110 0 0112232
Q ss_pred ecCccC---CCCCcEEEEcCCC-chhhhhHHHHHhCCCeEEEcC
Q 017153 93 ELTEDS---FDGVDIALFSAGG-SISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 93 ~~~~~~---~~~~DvVf~a~~~-~~s~~~~~~~~~~G~~VIDlS 132 (376)
+ |.+. ...+|+++++||. .+.++..-.+..+|..+|-+.
T Consensus 91 ~-D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmN 133 (438)
T COG4091 91 D-DAELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMN 133 (438)
T ss_pred c-chhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEE
Confidence 2 1121 2578999999987 445556556667776666443
No 180
>PRK05442 malate dehydrogenase; Provisional
Probab=94.60 E-value=0.093 Score=51.82 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=44.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCCC----CCceeeec------CcceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQ------DKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~~----~g~~~~~~------~~~~~v~~~~~~~~~~~Dv 104 (376)
+.||+|+||+|.+|..++-.|...+. ...+++.+-.... .|...... .....+..-+.+++.++|+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDi 83 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADV 83 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCE
Confidence 57999999999999999987765421 1236776643222 22221110 0122333333466789999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
|+.+.+.
T Consensus 84 VVitaG~ 90 (326)
T PRK05442 84 ALLVGAR 90 (326)
T ss_pred EEEeCCC
Confidence 9988764
No 181
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.57 E-value=0.16 Score=49.37 Aligned_cols=68 Identities=18% Similarity=0.392 Sum_probs=41.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceee--e----cCcceEEee-cCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLS--F----QDKAYTVEE-LTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~--~----~~~~~~v~~-~~~~~~~~~DvVf~a~~ 110 (376)
+||+|+|+ |.+|..++..+..+++ .+++++-.... .|.... . ......+.. .+.+++.++|+||+|.+
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~--~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKEL--GDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCC
Confidence 79999999 9999999998887632 27766542211 121110 0 111223332 23345789999999864
No 182
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.57 E-value=0.37 Score=45.67 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=56.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcC-------CCC-CeEEEEEe----cCCCCCceeee-----------------cCcce
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDR-------DFP-YRSIKMLA----SKRSAGKQLSF-----------------QDKAY 89 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~-------~~p-~~~l~~v~----s~~~~g~~~~~-----------------~~~~~ 89 (376)
..||.|+|+ |-+|.++++.|... +|+ ..++..+- +.+..++.+.. ...++
T Consensus 11 ~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 11 PVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 589999999 99999999999764 233 23555442 12222222110 00012
Q ss_pred EEee----cCcc-CCCCCcEEEEcCCCchhhhhHHHHHhC----CCeEEEcCC
Q 017153 90 TVEE----LTED-SFDGVDIALFSAGGSISKKFGPIAVEK----GSIVVDNSS 133 (376)
Q Consensus 90 ~v~~----~~~~-~~~~~DvVf~a~~~~~s~~~~~~~~~~----G~~VIDlS~ 133 (376)
.++. ++++ .+.++|+|+.|++...++.+..+.... ...+||...
T Consensus 90 ~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn 142 (244)
T TIGR03736 90 DWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGN 142 (244)
T ss_pred eEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccC
Confidence 2221 1222 245789999999999998877655433 356777665
No 183
>PLN02602 lactate dehydrogenase
Probab=94.49 E-value=0.096 Score=52.23 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=48.7
Q ss_pred CCCceeeec-cCCCCCC-CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceee--ec---CcceEEee-
Q 017153 24 TKPMFTRVR-MSYQESA-PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLS--FQ---DKAYTVEE- 93 (376)
Q Consensus 24 ~~~~~~~~~-~~~~~~~-irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~--~~---~~~~~v~~- 93 (376)
++||..... |. ++. .||+|+|+ |.||..++-.|...+. .-+++.+--.. ..|.... .. .....+..
T Consensus 22 ~~~~~~~~~~m~--~~~~~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~ 97 (350)
T PLN02602 22 FKPIHNSSPPSP--TRRHTKVSVVGV-GNVGMAIAQTILTQDL-ADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAS 97 (350)
T ss_pred hhcccccccccc--cCCCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeC
Confidence 455554443 42 123 79999997 9999999998877632 23666654322 1222111 00 01134433
Q ss_pred cCccCCCCCcEEEEcCCC
Q 017153 94 LTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 94 ~~~~~~~~~DvVf~a~~~ 111 (376)
.+.+++.++|+|+.+.+.
T Consensus 98 ~dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 98 TDYAVTAGSDLCIVTAGA 115 (350)
T ss_pred CCHHHhCCCCEEEECCCC
Confidence 244567899999998765
No 184
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.48 E-value=0.025 Score=50.65 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=39.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~ 112 (376)
..+|+|+|. |.+|+++.++|..- ..++.+......... .......... +.++ +..+|+|++++|..
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~~f---G~~V~~~d~~~~~~~--~~~~~~~~~~--~l~ell~~aDiv~~~~plt 102 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLKAF---GMRVIGYDRSPKPEE--GADEFGVEYV--SLDELLAQADIVSLHLPLT 102 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHHHT---T-EEEEEESSCHHHH--HHHHTTEEES--SHHHHHHH-SEEEE-SSSS
T ss_pred CCEEEEEEE-cCCcCeEeeeeecC---CceeEEecccCChhh--hcccccceee--ehhhhcchhhhhhhhhccc
Confidence 489999998 99999999999864 457766653222111 0000012222 2233 46899999999854
No 185
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.44 E-value=0.072 Score=49.76 Aligned_cols=68 Identities=25% Similarity=0.304 Sum_probs=41.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-ccC----CCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDS----FDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-~~~----~~~~DvVf~a~~~ 111 (376)
++|.|.||||++|+.+++.|..+ ..++++++.......... .+.++...++. +.. +.++|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~---~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR---GHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC---CCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence 57999999999999999999987 346666654322221221 11122222222 222 3689999888873
No 186
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.43 E-value=0.089 Score=51.81 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=63.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCC--CeEEEEEecCCCCCceeee--c--CcceEEeecCccCC---CCCcEEEEc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP--YRSIKMLASKRSAGKQLSF--Q--DKAYTVEELTEDSF---DGVDIALFS 108 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p--~~~l~~v~s~~~~g~~~~~--~--~~~~~v~~~~~~~~---~~~DvVf~a 108 (376)
+.+|.||+|+ |.+++.+++.|... | ...++++++++ ..+..++ + ..+.++.. .-+++ ..+|+|...
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~--p~s~~~Ivava~~s-~~~A~~fAq~~~~~~~k~y~-syEeLakd~~vDvVyi~ 79 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTL--PESNHQIVAVADPS-LERAKEFAQRHNIPNPKAYG-SYEELAKDPEVDVVYIS 79 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccC--cccCcEEEEEeccc-HHHHHHHHHhcCCCCCcccc-CHHHHhcCCCcCEEEeC
Confidence 4699999999 99999999999776 6 78999998873 2222222 1 11122221 12233 478999999
Q ss_pred CCCchhhhhHHHHHhCCCeEE
Q 017153 109 AGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VI 129 (376)
+++....+++-.++..|..|.
T Consensus 80 ~~~~qH~evv~l~l~~~K~VL 100 (351)
T KOG2741|consen 80 TPNPQHYEVVMLALNKGKHVL 100 (351)
T ss_pred CCCccHHHHHHHHHHcCCcEE
Confidence 999999999999998888765
No 187
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.43 E-value=0.14 Score=47.74 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=56.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCC-----------CCCceeee--------cCcceEEeec-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKR-----------SAGKQLSF--------QDKAYTVEEL- 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~-----------~~g~~~~~--------~~~~~~v~~~- 94 (376)
..||.|+|+ |-+|.++++.|...+. -++..+- +.+ ..|+.-.. ....+.+...
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv--g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV--GKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 479999999 9999999999988743 3444331 111 12221110 0112222221
Q ss_pred ---Cc----cCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 95 ---TE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 95 ---~~----~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
+. +.+.++|+||+|++...++.+..++ .+.|+.+|+.+.
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~ 144 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAV 144 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 11 1246899999999988777666654 567899998643
No 188
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.36 E-value=0.19 Score=51.71 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=61.2
Q ss_pred CCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s 114 (376)
..+|+|+|+| |..|..+++.|.+++|.. ++..+..... .+ ..++++. +.+++ ..+|+++.|+|....
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g-~v~~Vnp~~~---~i----~G~~~~~-sl~~lp~~~Dlavi~vp~~~~ 77 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKG-KIYPVNPKAG---EI----LGVKAYP-SVLEIPDPVDLAVIVVPAKYV 77 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCC-cEEEECCCCC---cc----CCccccC-CHHHCCCCCCEEEEecCHHHH
Confidence 4789999998 668999999998875532 5555543211 11 1122322 11223 468999999999999
Q ss_pred hhhHHHHHhCCCe-EEEcCCCCC
Q 017153 115 KKFGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 115 ~~~~~~~~~~G~~-VIDlS~~~R 136 (376)
.+.++++.++|++ +|-+|+-|.
T Consensus 78 ~~~l~e~~~~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 78 PQVVEECGEKGVKGAVVITAGFK 100 (447)
T ss_pred HHHHHHHHhcCCCEEEEECCCcc
Confidence 9999999999987 445677674
No 189
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.33 E-value=0.15 Score=44.17 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=55.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+..+|.|+|.+.-+|+.|..+|.++ ..++....++. +++ .+...++|+|++|++.. .-+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~---gatV~~~~~~t----------~~l------~~~v~~ADIVvsAtg~~--~~i 85 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRD---GATVYSCDWKT----------IQL------QSKVHDADVVVVGSPKP--EKV 85 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEeCCCC----------cCH------HHHHhhCCEEEEecCCC--Ccc
Confidence 3589999999999999999999874 45555443211 001 12347899999999876 334
Q ss_pred HHHHHhCCCeEEEcCCCC
Q 017153 118 GPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~ 135 (376)
-...++.|+.|||.+.+.
T Consensus 86 ~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEWIKPGATVINCSPTK 103 (140)
T ss_pred CHHHcCCCCEEEEcCCCc
Confidence 456678999999877654
No 190
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.28 E-value=0.096 Score=51.75 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=53.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
.++|+|||+ |.+|..+++.|...+ +++.+...+.......... ....+. +.. ...++|+||+|+|.....+.
T Consensus 17 gktIgIIG~-GsmG~AlA~~L~~sG---~~Vvv~~r~~~~s~~~A~~-~G~~~~--s~~eaa~~ADVVvLaVPd~~~~~V 89 (330)
T PRK05479 17 GKKVAIIGY-GSQGHAHALNLRDSG---VDVVVGLREGSKSWKKAEA-DGFEVL--TVAEAAKWADVIMILLPDEVQAEV 89 (330)
T ss_pred CCEEEEEee-HHHHHHHHHHHHHCC---CEEEEEECCchhhHHHHHH-CCCeeC--CHHHHHhcCCEEEEcCCHHHHHHH
Confidence 378999998 999999999998763 3655433322211111100 012221 322 34789999999998877776
Q ss_pred H-HHHHh---CCCeEEEcCCCCC
Q 017153 118 G-PIAVE---KGSIVVDNSSAFR 136 (376)
Q Consensus 118 ~-~~~~~---~G~~VIDlS~~~R 136 (376)
. +.+.. .|..+ ..++-|.
T Consensus 90 ~~~~I~~~Lk~g~iL-~~a~G~~ 111 (330)
T PRK05479 90 YEEEIEPNLKEGAAL-AFAHGFN 111 (330)
T ss_pred HHHHHHhcCCCCCEE-EECCCCC
Confidence 6 44443 46655 4444454
No 191
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.20 E-value=0.12 Score=50.67 Aligned_cols=69 Identities=17% Similarity=0.336 Sum_probs=43.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCC--CCceee--ec---CcceEEeecCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS--AGKQLS--FQ---DKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~--~g~~~~--~~---~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
+||+|+|| |.+|..+.-.|... +.. +++.+--... .|.... .. .....+..-+.+++.++|+|+.+.+.
T Consensus 7 ~ki~iiGa-G~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 79999999 99999999988876 554 5665542221 122111 00 01233333334567899999998765
No 192
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=94.17 E-value=0.15 Score=48.90 Aligned_cols=88 Identities=19% Similarity=0.058 Sum_probs=53.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe--cCCCCCceeee--cCcceEEeecC-cc-CC--CCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA--SKRSAGKQLSF--QDKAYTVEELT-ED-SF--DGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~--s~~~~g~~~~~--~~~~~~v~~~~-~~-~~--~~~DvVf~a~~ 110 (376)
.++|-|.|. |++|.+.+|.|..+ |.++++... |....|+.+.. +..++-+...+ .+ ++ ...++++..+-
T Consensus 2 ~~~vvqyGt-G~vGv~air~l~ak--pe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~ 78 (350)
T COG3804 2 SLRVVQYGT-GSVGVAAIRGLLAK--PELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLL 78 (350)
T ss_pred CceeEEecc-chHHHHHHHHHHcC--CCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceeccccceeeeccc
Confidence 478999995 99999999999988 999998654 34456766554 11233333211 11 11 12233333332
Q ss_pred CchhhhhHHHHHhCCCeEEEc
Q 017153 111 GSISKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDl 131 (376)
. +-+..++++.+|+.||--
T Consensus 79 ~--~~~~y~rlL~aGiNVv~~ 97 (350)
T COG3804 79 P--SVDEYARLLRAGINVVTP 97 (350)
T ss_pred c--hHHHHHHHHHcCCceecc
Confidence 2 133445678899999953
No 193
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=94.14 E-value=0.033 Score=54.50 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee---cCcceEEeecC-c----cCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---QDKAYTVEELT-E----DSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~---~~~~~~v~~~~-~----~~~~~~DvVf~a~~ 110 (376)
...+-|.|||||+|+-+++.|..+++ +. ++++++. ++.-.. -+.+-.+.++. + +..+.++||+.|.|
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~---~~-aLAgRs~-~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvG 80 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGL---TA-ALAGRSS-AKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVG 80 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCC---ch-hhccCCH-HHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEeccc
Confidence 36789999999999999999988643 33 4555442 221100 11221222211 2 12468999999999
Q ss_pred Cch--hhhhHHHHHhCCCeEEEcCCCC
Q 017153 111 GSI--SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~~--s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
... +..++...+.+|.--.|+++..
T Consensus 81 Pyt~~g~plv~aC~~~GTdY~DiTGEi 107 (382)
T COG3268 81 PYTRYGEPLVAACAAAGTDYADITGEI 107 (382)
T ss_pred cccccccHHHHHHHHhCCCeeeccccH
Confidence 865 4566677778999999999853
No 194
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=94.13 E-value=0.19 Score=49.43 Aligned_cols=102 Identities=14% Similarity=0.235 Sum_probs=63.5
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcC--CCCCeEEE---EEecCCCCC--ceeee----cCcceE----------Eee-
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDR--DFPYRSIK---MLASKRSAG--KQLSF----QDKAYT----------VEE- 93 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~--~~p~~~l~---~v~s~~~~g--~~~~~----~~~~~~----------v~~- 93 (376)
++++.||+|+|. |..|..+.+++.+. .||.++.. ++...+-.| +.+.+ ...+++ +..
T Consensus 18 ~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv 96 (372)
T KOG2711|consen 18 ERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAV 96 (372)
T ss_pred hcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEec
Confidence 345799999997 99999999988653 23433221 122333334 12211 111111 111
Q ss_pred cCc-cCCCCCcEEEEcCCCchhhhhHHHHH---hCCCeEEEcCCCCCCC
Q 017153 94 LTE-DSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAFRMV 138 (376)
Q Consensus 94 ~~~-~~~~~~DvVf~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~R~~ 138 (376)
.|. +...++|++++++||.......+++. +.++..|+|+--|-..
T Consensus 97 ~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~ 145 (372)
T KOG2711|consen 97 PDLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVG 145 (372)
T ss_pred chHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceecc
Confidence 111 22368999999999999888888774 5788899998877544
No 195
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=94.13 E-value=0.092 Score=57.27 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=55.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-eeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~ 117 (376)
.||+|+|+ |.+|..+++.|...+++ .++.++ +++.... .....+. ......+. +.+.++|+||+|+|.....+.
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~-~~V~~~-d~~~~~~~~a~~~g~-~~~~~~~~~~~~~~aDvVilavp~~~~~~v 79 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLA-REVVAV-DRRAKSLELAVSLGV-IDRGEEDLAEAVSGADVIVLAVPVLAMEKV 79 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCC-CEEEEE-ECChhHHHHHHHCCC-CCcccCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 68999997 99999999999876432 244433 3322110 0000010 00001111 224689999999998877777
Q ss_pred HHHHH---hCCCeEEEcCCC
Q 017153 118 GPIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~---~~G~~VIDlS~~ 134 (376)
.+.+. ..++.|+|+++.
T Consensus 80 l~~l~~~~~~~~ii~d~~sv 99 (735)
T PRK14806 80 LADLKPLLSEHAIVTDVGST 99 (735)
T ss_pred HHHHHHhcCCCcEEEEcCCC
Confidence 66654 457889998874
No 196
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.11 E-value=0.078 Score=52.42 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=49.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
.++|+|+|+ |.+|+.+.+.|... | ..++.+. +++. ...... ..... .+.+ .+.++|+|++|+|.....+.
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~-~-g~~V~~~-d~~~-~~~~~~---~~~~~-~~l~ell~~aDvIvl~lP~t~~t~~ 216 (332)
T PRK08605 146 DLKVAVIGT-GRIGLAVAKIFAKG-Y-GSDVVAY-DPFP-NAKAAT---YVDYK-DTIEEAVEGADIVTLHMPATKYNHY 216 (332)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhc-C-CCEEEEE-CCCc-cHhHHh---hcccc-CCHHHHHHhCCEEEEeCCCCcchhh
Confidence 379999998 99999999998432 2 3455443 3321 111100 11111 1222 34789999999998654333
Q ss_pred H-----HHHHhCCCeEEEcCC
Q 017153 118 G-----PIAVEKGSIVVDNSS 133 (376)
Q Consensus 118 ~-----~~~~~~G~~VIDlS~ 133 (376)
. -...+.|+.+|+.|-
T Consensus 217 li~~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 217 LFNADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred hcCHHHHhcCCCCcEEEECCC
Confidence 2 112345777777654
No 197
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.08 E-value=0.19 Score=49.31 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=42.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecC--CCCCceeee------cCcceEEee-cCccCCCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASK--RSAGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~--~~~g~~~~~------~~~~~~v~~-~~~~~~~~~DvVf~a~ 109 (376)
+||+|+|| |.||..++-+|... ... |++.+-=. ...|..... ...+..+.. -+.+++.++|+|+.+.
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~--~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQ--GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcc--cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 58999999 99999999988766 444 77665322 122222111 112233333 2345678999999887
Q ss_pred C
Q 017153 110 G 110 (376)
Q Consensus 110 ~ 110 (376)
+
T Consensus 78 G 78 (313)
T COG0039 78 G 78 (313)
T ss_pred C
Confidence 4
No 198
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.08 E-value=0.37 Score=50.26 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=51.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-----------------cC-cceEEeecCc-cCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-----------------QD-KAYTVEELTE-DSF 99 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-----------------~~-~~~~v~~~~~-~~~ 99 (376)
+||||||+ |.+|..++..|+.++| ++.+.. ++.. -+.+.. .. ..+.+.. +. +.+
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~---~V~v~D-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~-~~~ea~ 78 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGI---DVAVFD-PHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCA-SLAEAV 78 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC---eEEEEe-CCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeC-CHHHHh
Confidence 58999998 9999999999988744 555432 2211 001000 00 0122222 23 345
Q ss_pred CCCcEEEEcCCCchhh--hhHHH---HHhCCCeEEEcCCCCC
Q 017153 100 DGVDIALFSAGGSISK--KFGPI---AVEKGSIVVDNSSAFR 136 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~--~~~~~---~~~~G~~VIDlS~~~R 136 (376)
.++|+||+|++..... .+... +...++.+...++.+.
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~ 120 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFL 120 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 7999999999988532 22222 2344565555665543
No 199
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.07 E-value=0.18 Score=53.31 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
...|.|.||+|++|+.+++.|++++ .+++++.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval~ 111 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLG---FRVRAGV 111 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CeEEEEe
Confidence 3679999999999999999998863 4666554
No 200
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.05 E-value=0.16 Score=50.14 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=40.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCC----CCCceeeec------CcceEEeecCccCCCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKR----SAGKQLSFQ------DKAYTVEELTEDSFDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~----~~g~~~~~~------~~~~~v~~~~~~~~~~~DvV 105 (376)
.||+|+||+|.+|..+...|...+. ...+++.+--.. ..|...... .....+..-+.+++.++|+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 4899999999999999998887621 112366553222 112111100 01122222223456788988
Q ss_pred EEcCCC
Q 017153 106 LFSAGG 111 (376)
Q Consensus 106 f~a~~~ 111 (376)
+.+.+.
T Consensus 81 VitAG~ 86 (323)
T cd00704 81 ILVGAF 86 (323)
T ss_pred EEeCCC
Confidence 887665
No 201
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.05 E-value=0.11 Score=50.22 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=26.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|+||++|+.|++.|.++++ +++++.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~---~V~~~~ 35 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY---TVKATV 35 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC---EEEEEE
Confidence 47899999999999999999988744 555544
No 202
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.96 E-value=0.2 Score=47.74 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=25.3
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
+|.|.|+|||+|+.|++.|.+++ .++..+..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG---HDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC---CeEEEEeC
Confidence 49999999999999999999853 36666653
No 203
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=93.94 E-value=0.26 Score=49.04 Aligned_cols=108 Identities=16% Similarity=0.249 Sum_probs=62.7
Q ss_pred EEEEECcccHHHHHHHHHHhcCC-C-C---CeEEEEEecCCC--CCceee----ec--------C----cceEEeecCc-
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRD-F-P---YRSIKMLASKRS--AGKQLS----FQ--------D----KAYTVEELTE- 96 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~-~-p---~~~l~~v~s~~~--~g~~~~----~~--------~----~~~~v~~~~~- 96 (376)
||+|+|+ |..|..|...|..++ . + +.++.... ++. .+..+. .. + .++.... |.
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~-~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~-dl~ 77 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWV-FEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP-DLV 77 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEE-eccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC-CHH
Confidence 6899998 999999999998753 0 0 13444332 210 011110 00 0 1122211 22
Q ss_pred cCCCCCcEEEEcCCCchhhhhHHHHH---hCCCeEEEcCCCCCCCCCCcEEeeccCHH
Q 017153 97 DSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAFRMVENVPLVIPEVNPE 151 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~R~~~~~~~~lpevN~~ 151 (376)
+.+.++|++|+|+|+...++.+.++. ..+..+|.++.-+-.+++....+.++=.+
T Consensus 78 eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e 135 (342)
T TIGR03376 78 EAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE 135 (342)
T ss_pred HHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH
Confidence 23478999999999998888777664 45678998888875443233333443333
No 204
>PLN02700 homoserine dehydrogenase family protein
Probab=93.92 E-value=0.18 Score=50.73 Aligned_cols=29 Identities=14% Similarity=-0.070 Sum_probs=25.4
Q ss_pred CcEEEEcCCCchhhhhHHHHHhCCCeEEE
Q 017153 102 VDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 102 ~DvVf~a~~~~~s~~~~~~~~~~G~~VID 130 (376)
.+|+++|+++....++.+.++++|+.||-
T Consensus 110 ~~ViVD~T~s~~~~~~y~~aL~~G~hVVT 138 (377)
T PLN02700 110 GLVVVDCSASMETIGALNEAVDLGCCIVL 138 (377)
T ss_pred CCEEEECCCChHHHHHHHHHHHCCCeEEc
Confidence 59999999997777888889999999994
No 205
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=93.87 E-value=0.19 Score=51.48 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=55.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCCceee----e-------cCc---------------ceEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLS----F-------QDK---------------AYTV 91 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g~~~~----~-------~~~---------------~~~v 91 (376)
++||+|+|+||-||...++.+.++ |+ +++++++..+....... + ... +..+
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~--pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~v 134 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAEN--PDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEI 134 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhC--ccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEE
Confidence 479999999999999999999887 54 88988865443322111 0 000 0111
Q ss_pred e-ecC-cc---CCCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 92 E-ELT-ED---SFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 92 ~-~~~-~~---~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
. ..+ .. ...++|+|+.+........-.-.++++|..|.
T Consensus 135 l~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VA 177 (454)
T PLN02696 135 IPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIA 177 (454)
T ss_pred EECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEE
Confidence 1 000 01 12478999999877655444456678887765
No 206
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.87 E-value=0.21 Score=49.17 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=44.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee--ecCcceEEeec-C----ccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--FQDKAYTVEEL-T----EDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~--~~~~~~~v~~~-~----~~~~~~~DvVf~a~~~ 111 (376)
+.||+|+||+|.||..+...|..++. ..+++.+--....|.... .......+... + .+++.++|+|+.|.+.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 46999999999999999998886522 235655432222232111 11112233322 2 2456899999999877
Q ss_pred c
Q 017153 112 S 112 (376)
Q Consensus 112 ~ 112 (376)
.
T Consensus 87 ~ 87 (321)
T PTZ00325 87 P 87 (321)
T ss_pred C
Confidence 3
No 207
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=93.85 E-value=0.092 Score=49.76 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=24.3
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
||.|.|+||++|+.+++.|.++++ ++..+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~---~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR---VVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC---EEEEeC
Confidence 589999999999999999988643 565443
No 208
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.83 E-value=0.17 Score=48.95 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=60.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|+++.+|+-+..+|.++ +.++....++. .++ .+...++|+||.|+|...- +-
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~---gatVtv~~s~t----------~~l------~~~~~~ADIVIsAvg~p~~--i~ 216 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQK---NASVTILHSRS----------KDM------ASYLKDADVIVSAVGKPGL--VT 216 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC---CCeEEEEeCCc----------hhH------HHHHhhCCEEEECCCCCcc--cC
Confidence 489999999888999999999875 45666554421 011 1234789999999987421 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+... ..++ -.+-.++.+.++
T Consensus 217 ~~~vk~gavVIDvGi~~-~~~g--kl~GDvd~~~~~ 249 (286)
T PRK14175 217 KDVVKEGAVIIDVGNTP-DENG--KLKGDVDYDAVK 249 (286)
T ss_pred HHHcCCCcEEEEcCCCc-CCCC--CeecCccHHHHH
Confidence 23457799999998763 1111 134456656555
No 209
>PLN00106 malate dehydrogenase
Probab=93.76 E-value=0.19 Score=49.62 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=43.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee--ecCcceEEeec--C---ccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--FQDKAYTVEEL--T---EDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~--~~~~~~~v~~~--~---~~~~~~~DvVf~a~~~ 111 (376)
+.||+|+||+|.||..+...|..++. .-+++.+--....|.... .......+..+ + .+++.++|+|+.+.+.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~-~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPL-VSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-CCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 46999999999999999998886522 225665532222332211 11112233321 2 2356899999998776
No 210
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.76 E-value=1.3 Score=43.18 Aligned_cols=138 Identities=19% Similarity=0.204 Sum_probs=70.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce-----------eeecC-----------cceEEeecCcc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-----------LSFQD-----------KAYTVEELTED 97 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~-----------~~~~~-----------~~~~v~~~~~~ 97 (376)
++|+|+|+ |.+|..+...|..+++ ++.++......... +...+ ..+.+. .+..
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~G~---~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~-~~~~ 77 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARAGH---EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT-DSLA 77 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHCCC---eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE-CcHH
Confidence 58999997 9999999999998754 55544321110000 00000 012222 1222
Q ss_pred -CCCCCcEEEEcCCCch--hhhhHHHHH---hCCCeEEEcCCCCCCC--------CCCcEEeeccCHHhhcCcccCCCCC
Q 017153 98 -SFDGVDIALFSAGGSI--SKKFGPIAV---EKGSIVVDNSSAFRMV--------ENVPLVIPEVNPEAMSGIKVGMGKG 163 (376)
Q Consensus 98 -~~~~~DvVf~a~~~~~--s~~~~~~~~---~~G~~VIDlS~~~R~~--------~~~~~~lpevN~~~i~~~~~~~~~~ 163 (376)
.+.++|+||+|+|... -..+...+. ...+.+...++.+... .+.-++.-.+|+..+.. -.
T Consensus 78 ~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~------lv 151 (308)
T PRK06129 78 DAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIP------VV 151 (308)
T ss_pred HhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCc------eE
Confidence 3578999999999864 233333332 2234343333332211 01124444455433221 12
Q ss_pred cEEEcCCchHHHHHHHHhHHHHhCCC
Q 017153 164 ALIANPNCSTIICLMAATPLHRRAKV 189 (376)
Q Consensus 164 ~iVa~PgC~~ta~~l~L~pL~~~~~i 189 (376)
.+|..+++....+. .+.++.+..+=
T Consensus 152 eiv~~~~t~~~~~~-~~~~~~~~lG~ 176 (308)
T PRK06129 152 EVVPAPWTAPATLA-RAEALYRAAGQ 176 (308)
T ss_pred EEeCCCCCCHHHHH-HHHHHHHHcCC
Confidence 35655566555544 57788887663
No 211
>PLN00203 glutamyl-tRNA reductase
Probab=93.76 E-value=0.1 Score=54.70 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=54.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee--cCcceEEeecC--ccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--QDKAYTVEELT--EDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~--~~~~~~v~~~~--~~~~~~~DvVf~a~~~~~ 113 (376)
..+|+|+|+ |-+|+.+++.|..+ +.-++.++ +++. ....+.. .+..+.+...+ .+.+.++|+||+|++...
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~--G~~~V~V~-nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSK--GCTKMVVV-NRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhC--CCCeEEEE-eCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence 478999999 99999999999876 32344433 3321 1111111 11112222222 123578999999986644
Q ss_pred ---hhhhHHHHHhC------CCeEEEcCCC
Q 017153 114 ---SKKFGPIAVEK------GSIVVDNSSA 134 (376)
Q Consensus 114 ---s~~~~~~~~~~------G~~VIDlS~~ 134 (376)
..++++.+... ...+||++=+
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 55666655321 1469999876
No 212
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.73 E-value=0.27 Score=39.97 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=50.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecCccCCCCCcEEEEcCCCch-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGSI-SK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~~~~~~~~DvVf~a~~~~~-s~ 115 (376)
..+|.|+|+ |-+|..=++.|.+. ..++.+++... ... . ..+.+. ++ .+++.++|+||.|++... ..
T Consensus 7 ~~~vlVvGg-G~va~~k~~~Ll~~---gA~v~vis~~~---~~~-~--~~i~~~~~~~-~~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 7 GKRVLVVGG-GPVAARKARLLLEA---GAKVTVISPEI---EFS-E--GLIQLIRREF-EEDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp T-EEEEEEE-SHHHHHHHHHHCCC---TBEEEEEESSE---HHH-H--TSCEEEESS--GGGCTTESEEEE-SS-HHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEECCch---hhh-h--hHHHHHhhhH-HHHHhhheEEEecCCCHHHHH
Confidence 489999999 99999999999885 46777666432 000 0 112222 22 245789999999997754 44
Q ss_pred hhHHHHHhCCCeEE
Q 017153 116 KFGPIAVEKGSIVV 129 (376)
Q Consensus 116 ~~~~~~~~~G~~VI 129 (376)
.......+.|+.|=
T Consensus 76 ~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 76 AIYADARARGILVN 89 (103)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHhhCCEEEE
Confidence 44455556777654
No 213
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=93.71 E-value=0.18 Score=50.88 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=44.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCC----eEEEEE-ecC---CCCCceeee------cCcceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY----RSIKML-ASK---RSAGKQLSF------QDKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~----~~l~~v-~s~---~~~g~~~~~------~~~~~~v~~~~~~~~~~~Dv 104 (376)
+.||+|+||+|.||..++-.|...+.-+ +.++++ .+. ...|..... ....+.+..-+.+++.++|+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDI 123 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADW 123 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCE
Confidence 6899999999999999999887663211 345444 221 111221110 01123333334566889999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
|+.+.+.
T Consensus 124 VVitAG~ 130 (387)
T TIGR01757 124 ALLIGAK 130 (387)
T ss_pred EEECCCC
Confidence 9998765
No 214
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.70 E-value=0.16 Score=48.87 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=25.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
|+|.|.|++|++|+.+++.|.+++ .++.++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 479999999999999999998873 36665543
No 215
>PRK08219 short chain dehydrogenase; Provisional
Probab=93.68 E-value=0.24 Score=44.89 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++++.|.|++|++|+.+.+.|.++ .++.++.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~ 33 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT----HTLLLGG 33 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh----CCEEEEe
Confidence 468999999999999999999875 3555444
No 216
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.67 E-value=0.074 Score=54.22 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecC--ccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~--~~~~~~~DvVf~a~~~~~s~ 115 (376)
..||.|+|+ |-+|+.+++.|..+ ..-++. +++++. ..+.+........+..++ .+.+.++|+||.|++...--
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~--g~~~I~-V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~v 256 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTAL--APKQIM-LANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYI 256 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHc--CCCEEE-EECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCee
Confidence 378999998 99999999999876 333444 444431 112222111111222222 23357899999999774332
Q ss_pred hhHHHHHhCCCeEEEcCCC
Q 017153 116 KFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~ 134 (376)
-...........+||++=+
T Consensus 257 i~~~~~~~~~~~~iDLavP 275 (414)
T PRK13940 257 VTCKYVGDKPRVFIDISIP 275 (414)
T ss_pred ECHHHhCCCCeEEEEeCCC
Confidence 1112222234579999766
No 217
>PRK08618 ornithine cyclodeaminase; Validated
Probab=93.62 E-value=0.15 Score=50.28 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=57.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec---CcceEEeec-Ccc-CCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ---DKAYTVEEL-TED-SFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~---~~~~~v~~~-~~~-~~~~~DvVf~a~~~~ 112 (376)
..+++|+|+ |..|+..++.+... ..++.+.+.+++.. .+.+... ...+.+... +.+ .+.++|+|+.|||+.
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~--~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAV--RDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK 203 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhc--CCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence 478999998 99999888877644 34566666665421 1111110 001222222 222 357899999999987
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
...+. ..++.|+.|+-..++.
T Consensus 204 -~p~i~-~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 204 -TPVFS-EKLKKGVHINAVGSFM 224 (325)
T ss_pred -CcchH-HhcCCCcEEEecCCCC
Confidence 34455 6678899998777653
No 218
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.58 E-value=0.2 Score=48.23 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=74.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cceee----------ecC-----------cceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLS----------FQD-----------KAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~----------~~~-----------~~~~v~~~~ 95 (376)
..||+|+|+ |..|..+...|..+++ ++.+.. ++.. .+... ..+ ..+.... +
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~---~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY---DVLLND-VSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT-D 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC---eEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC-C
Confidence 368999998 9999999999988644 555443 2211 11000 000 0122221 2
Q ss_pred ccCCCCCcEEEEcCCCchh--hhhHHHH---HhCCCeEEEcCCCCCCCC---CC--c---EEeeccCHHhhcCcccCCCC
Q 017153 96 EDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRMVE---NV--P---LVIPEVNPEAMSGIKVGMGK 162 (376)
Q Consensus 96 ~~~~~~~DvVf~a~~~~~s--~~~~~~~---~~~G~~VIDlS~~~R~~~---~~--~---~~lpevN~~~i~~~~~~~~~ 162 (376)
.+.+.++|+||+|+|.... ..+...+ +..++.++.+++.+.... .. | .++--+|+-.+.. .
T Consensus 78 ~~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~------~ 151 (292)
T PRK07530 78 LEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMK------L 151 (292)
T ss_pred HHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCc------e
Confidence 3346799999999987533 2333333 345677877777765321 00 0 2333333222221 1
Q ss_pred CcEEEcCCchHHHHHHHHhHHHHhCCCcE
Q 017153 163 GALIANPNCSTIICLMAATPLHRRAKVTR 191 (376)
Q Consensus 163 ~~iVa~PgC~~ta~~l~L~pL~~~~~i~~ 191 (376)
..++..+++..-.+ -.+.++.+..+-..
T Consensus 152 vei~~g~~t~~~~~-~~~~~~~~~~gk~~ 179 (292)
T PRK07530 152 VELIRGIATDEATF-EAAKEFVTKLGKTI 179 (292)
T ss_pred EEEeCCCCCCHHHH-HHHHHHHHHcCCeE
Confidence 23555556655543 44667777665433
No 219
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=93.52 E-value=0.17 Score=49.76 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=87.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCc-hhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS-ISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~-~s~~ 116 (376)
.+||+|||+ |..|..+++.|..++ +++.....+.... ...... .+.+.. ..+...++|+||+|+|.. ....
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG---~~Viv~~~~~~~~~~~a~~~--Gv~~~s-~~ea~~~ADiVvLaVpp~~~~~~ 75 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSG---LNVIVGLRKGGASWKKATED--GFKVGT-VEEAIPQADLIMNLLPDEVQHEV 75 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCC---CeEEEEECcChhhHHHHHHC--CCEECC-HHHHHhcCCEEEEeCCcHhHHHH
Confidence 378999998 999999999998763 3543333222111 111011 122221 122357899999999987 4444
Q ss_pred hHHHHH---hCCCeEEEcCCCCCCCC---------CCcEEeeccCHHhhc-CcccCCCCC-cEE-EcCCchHHHHHHHHh
Q 017153 117 FGPIAV---EKGSIVVDNSSAFRMVE---------NVPLVIPEVNPEAMS-GIKVGMGKG-ALI-ANPNCSTIICLMAAT 181 (376)
Q Consensus 117 ~~~~~~---~~G~~VIDlS~~~R~~~---------~~~~~lpevN~~~i~-~~~~~~~~~-~iV-a~PgC~~ta~~l~L~ 181 (376)
+.+.+. +.| .+|..++-|.+.. ++..+.|-.+...++ .+.++ .+. .++ .++.++..+.-+++.
T Consensus 76 v~~ei~~~l~~g-~iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G-~G~~~l~a~~~~~~~~~~~~~~~ 153 (314)
T TIGR00465 76 YEAEIQPLLKEG-KTLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEG-FGVPTLIAVEQDPTGEAMAIALA 153 (314)
T ss_pred HHHHHHhhCCCC-cEEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcC-CCeeEEEEecCCCCHHHHHHHHH
Confidence 444343 234 4888887776432 123456665544221 00001 122 344 677788777766665
Q ss_pred HHHHhCCCc-------------EEEEEEEccccccChHhHH
Q 017153 182 PLHRRAKVT-------------RMVVSTYQAASGAGAAAME 209 (376)
Q Consensus 182 pL~~~~~i~-------------~v~v~t~~gvSGaGr~~~~ 209 (376)
-+..-+..+ .=.++...+.||.|-.-+.
T Consensus 154 ~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~ 194 (314)
T TIGR00465 154 YAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIK 194 (314)
T ss_pred HHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHH
Confidence 443333331 1124556778888765544
No 220
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.51 E-value=0.52 Score=44.03 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=58.2
Q ss_pred CCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeeecCcceEEe--ecCccC
Q 017153 23 RTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVE--ELTEDS 98 (376)
Q Consensus 23 ~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~~~~~~~v~--~~~~~~ 98 (376)
+.|||+--+..+ ..+|-|+|+ |.++..=++.|++. ..++.+++ +..... .+.. ...+.+. +.++.+
T Consensus 13 ~~~~~pi~l~~~----~~~VLVVGG-G~VA~RK~~~Ll~~---gA~VtVVa-p~i~~el~~l~~-~~~i~~~~r~~~~~d 82 (223)
T PRK05562 13 ENKYMFISLLSN----KIKVLIIGG-GKAAFIKGKTFLKK---GCYVYILS-KKFSKEFLDLKK-YGNLKLIKGNYDKEF 82 (223)
T ss_pred cCCEeeeEEECC----CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEEc-CCCCHHHHHHHh-CCCEEEEeCCCChHH
Confidence 356666655533 589999999 99998877777764 35666554 222111 0111 1123333 344556
Q ss_pred CCCCcEEEEcCCCch-hhhhHHHHHhCCCeEE
Q 017153 99 FDGVDIALFSAGGSI-SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~-s~~~~~~~~~~G~~VI 129 (376)
+.++++||.|++... .......+.+.|+.|.
T Consensus 83 l~g~~LViaATdD~~vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 83 IKDKHLIVIATDDEKLNNKIRKHCDRLYKLYI 114 (223)
T ss_pred hCCCcEEEECCCCHHHHHHHHHHHHHcCCeEE
Confidence 789999999998754 3444444445576654
No 221
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.50 E-value=0.096 Score=53.42 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=52.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCcceEEeecCccCCCCCcEEEEcCCCchh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDKAYTVEELTEDSFDGVDIALFSAGGSIS- 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s- 114 (376)
..+|+|+|+ |-+|+.+++.|..+ ...++.++ +++.. ...+.. +...+...+. .+.+.++|+||+|++....
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~--G~~~V~v~-~rs~~ra~~la~~~g~~~i~~~~l-~~~l~~aDvVi~aT~s~~~i 254 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRK--GVGKILIA-NRTYERAEDLAKELGGEAVKFEDL-EEYLAEADIVISSTGAPHPI 254 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHC--CCCEEEEE-eCCHHHHHHHHHHcCCeEeeHHHH-HHHHhhCCEEEECCCCCCce
Confidence 379999998 99999999999876 33455544 33211 111111 1111111111 2234689999999976543
Q ss_pred --hhhHHHHHh---CCCeEEEcCCC
Q 017153 115 --KKFGPIAVE---KGSIVVDNSSA 134 (376)
Q Consensus 115 --~~~~~~~~~---~G~~VIDlS~~ 134 (376)
.++...... .+..+||++-+
T Consensus 255 i~~e~l~~~~~~~~~~~~viDla~P 279 (417)
T TIGR01035 255 VSKEDVERALRERTRPLFIIDIAVP 279 (417)
T ss_pred EcHHHHHHHHhcCCCCeEEEEeCCC
Confidence 344444332 24579999854
No 222
>PLN02778 3,5-epimerase/4-reductase
Probab=93.50 E-value=0.083 Score=51.15 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=25.2
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
++++|||.|.|+||++|+.|++.|.++++
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g~ 34 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQGI 34 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCC
Confidence 34578999999999999999999988744
No 223
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=93.48 E-value=0.32 Score=46.40 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=49.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec-CcceEEeecCccCC------CCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-DKAYTVEELTEDSF------DGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~-~~~~~v~~~~~~~~------~~~DvVf~a~~~~ 112 (376)
|||.|+|+||+ |+.|++.|.+.+ .++.+.+......+.+... ...+....++.+.+ .+.|+|++|+-.+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPf 76 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPF 76 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHH
Confidence 58999999999 999999998763 3454433222222222221 12222223443222 3689999998776
Q ss_pred hh---hhhHHHHHhCCCeEEE
Q 017153 113 IS---KKFGPIAVEKGSIVVD 130 (376)
Q Consensus 113 ~s---~~~~~~~~~~G~~VID 130 (376)
++ ........+.|+..|.
T Consensus 77 A~~is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 77 AAQITTNATAVCKELGIPYVR 97 (256)
T ss_pred HHHHHHHHHHHHHHhCCcEEE
Confidence 53 2222333456777764
No 224
>PRK05865 hypothetical protein; Provisional
Probab=93.48 E-value=0.21 Score=55.37 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=50.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ec-CccC----CCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--EL-TEDS----FDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~-~~~~----~~~~DvVf~a~~~~ 112 (376)
|||.|.|+||++|+.+++.|.++++ ++..+.. +... .... .+.+. ++ +.+. +.++|+||.|.+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~---~Vv~l~R-~~~~-~~~~---~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH---EVVGIAR-HRPD-SWPS---SADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEEC-Cchh-hccc---CceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999988643 6655542 2111 1100 11111 22 1211 36799999987542
Q ss_pred h---------hhhhHHHHHhCCC-eEEEcCCC
Q 017153 113 I---------SKKFGPIAVEKGS-IVVDNSSA 134 (376)
Q Consensus 113 ~---------s~~~~~~~~~~G~-~VIDlS~~ 134 (376)
. +...++.+.+.|+ ++|-.|+.
T Consensus 73 ~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~ 104 (854)
T PRK05865 73 GRNDHINIDGTANVLKAMAETGTGRIVFTSSG 104 (854)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCeEEEECCc
Confidence 1 2233444455676 46666665
No 225
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.45 E-value=0.2 Score=49.14 Aligned_cols=70 Identities=24% Similarity=0.417 Sum_probs=43.1
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEEee-c-C---ccCCCCCcEEEEcCCC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVEE-L-T---EDSFDGVDIALFSAGG 111 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v~~-~-~---~~~~~~~DvVf~a~~~ 111 (376)
||+|+||+|.||..+.-.|..+++ ..+++.+--....|..... ......+.. . + .+++.++|+|+.+.+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~-~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY-VSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC-CcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 699999999999999998877622 2467665322233332211 111123332 1 1 3567899999998775
No 226
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=93.40 E-value=0.25 Score=47.82 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..++|.|.|+||++|+.+++.|.++++ +++.+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~ 36 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY---TVKATV 36 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEE
Confidence 347999999999999999999988743 565444
No 227
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.39 E-value=0.28 Score=50.37 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=44.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcC-----CCC-CeEEEEEecCC--CCCceeee------cCcceEEeecCccCCCCCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDR-----DFP-YRSIKMLASKR--SAGKQLSF------QDKAYTVEELTEDSFDGVD 103 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~-----~~p-~~~l~~v~s~~--~~g~~~~~------~~~~~~v~~~~~~~~~~~D 103 (376)
+.+||+|+||+|.||..++-.|... +.+ ..+++.+--.. ..|..+.. ....+.+..-+.+++.++|
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaD 178 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAE 178 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCC
Confidence 4689999999999999999988754 111 12565442111 12221110 0123333333456789999
Q ss_pred EEEEcCCC
Q 017153 104 IALFSAGG 111 (376)
Q Consensus 104 vVf~a~~~ 111 (376)
+|+.+.+.
T Consensus 179 iVVitAG~ 186 (444)
T PLN00112 179 WALLIGAK 186 (444)
T ss_pred EEEECCCC
Confidence 99998776
No 228
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.39 E-value=0.21 Score=48.18 Aligned_cols=139 Identities=18% Similarity=0.201 Sum_probs=73.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cc---e-------eeecC-----------cceEEeecCcc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GK---Q-------LSFQD-----------KAYTVEELTED 97 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~---~-------~~~~~-----------~~~~v~~~~~~ 97 (376)
.||+|+|+ |.+|..+++.|+.++ .++.++...... .+ . +...+ ..+.+. .+.+
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~ 79 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAG---MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNLE 79 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCHH
Confidence 58999999 999999999998863 466544321111 00 0 00000 012222 1234
Q ss_pred CCCCCcEEEEcCCCchh--hhhHHHH---HhCCCeEEEcCCCCCCCC---C----C-cEEeeccCHHhhcCcccCCCCCc
Q 017153 98 SFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRMVE---N----V-PLVIPEVNPEAMSGIKVGMGKGA 164 (376)
Q Consensus 98 ~~~~~DvVf~a~~~~~s--~~~~~~~---~~~G~~VIDlS~~~R~~~---~----~-~~~lpevN~~~i~~~~~~~~~~~ 164 (376)
.+.++|+||+|.+.+.. ..+..++ ...++.++.+++...... . . -.++--+|+..... -..
T Consensus 80 ~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~------lve 153 (295)
T PLN02545 80 ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMK------LVE 153 (295)
T ss_pred HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCc------eEE
Confidence 46899999999995443 2333333 345667776777664321 0 0 12333334333221 123
Q ss_pred EEEcCCchHHHHHHHHhHHHHhCCCc
Q 017153 165 LIANPNCSTIICLMAATPLHRRAKVT 190 (376)
Q Consensus 165 iVa~PgC~~ta~~l~L~pL~~~~~i~ 190 (376)
++..+++..-.+ -.+.+|++..+-.
T Consensus 154 iv~g~~t~~e~~-~~~~~ll~~lG~~ 178 (295)
T PLN02545 154 IIRGADTSDEVF-DATKALAERFGKT 178 (295)
T ss_pred EeCCCCCCHHHH-HHHHHHHHHcCCe
Confidence 455555555443 3467887776643
No 229
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.37 E-value=0.17 Score=49.27 Aligned_cols=68 Identities=16% Similarity=0.315 Sum_probs=41.9
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCCCCceeee--------cCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAGKQLSF--------QDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~~g~~~~~--------~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
||+|+|+ |.+|..++..|... ... +++++.......+.... ......+...+.+++.++|+||.|++.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~--g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQ--GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 8999998 99999999998876 333 66655422221111111 011222333334457899999999886
No 230
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.32 E-value=0.25 Score=47.79 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=59.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|++|.+|+-+..+|.++ ..++....+ +. +++ .+.+.++|+|+.|+|... -.-
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~---gatVtv~~~-~t---------~~L------~~~~~~aDIvI~AtG~~~--~v~ 217 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNA---NATVTICHS-RT---------QNL------PELVKQADIIVGAVGKPE--LIK 217 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhC---CCEEEEEeC-Cc---------hhH------HHHhccCCEEEEccCCCC--cCC
Confidence 479999999889999999999875 235554432 10 011 123468999999997433 333
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
....+.|+.|||..-.. .++. ++-+++.+.+..
T Consensus 218 ~~~lk~gavViDvg~n~-~~~~---~~GDvd~~~~~~ 250 (283)
T PRK14192 218 KDWIKQGAVVVDAGFHP-RDGG---GVGDIELQGIEE 250 (283)
T ss_pred HHHcCCCCEEEEEEEee-cCCC---CcccccHHHhhc
Confidence 45678899999987542 1211 345667666653
No 231
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.31 E-value=0.19 Score=50.80 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=49.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCcee-eecC-------cceEEe-ecCcc-CCCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQL-SFQD-------KAYTVE-ELTED-SFDGVD 103 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~~~-~~~~-------~~~~v~-~~~~~-~~~~~D 103 (376)
|||+|+|. ||+|.-+...++. +| ++..+.-... .|... ...+ ....+. ..++. ...++|
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~---~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH---EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDAD 75 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC---cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCC
Confidence 58999998 9999999987764 33 5555431111 11100 0000 011222 22222 247899
Q ss_pred EEEEcCCCchhh-------hhH----HHH--HhCCCeEEEcCCCC
Q 017153 104 IALFSAGGSISK-------KFG----PIA--VEKGSIVVDNSSAF 135 (376)
Q Consensus 104 vVf~a~~~~~s~-------~~~----~~~--~~~G~~VIDlS~~~ 135 (376)
+||.|+|..... ..+ ..+ ...|..||+-|.-.
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~ 120 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVP 120 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecC
Confidence 999999976321 111 111 24678888877654
No 232
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.28 E-value=0.3 Score=41.44 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=53.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCC-----------Cceeee--------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSA-----------GKQLSF--------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~-----------g~~~~~--------~~~~~~v~~-- 93 (376)
..||+|+|+ |-+|.++++.|... ..-++..+-.. ... |+.-.. ......+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~--Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARS--GVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHH--TTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHh--CCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 368999999 99999999999876 33455544211 111 111000 011122221
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHH-HHHhCCCeEEEcC
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNS 132 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~-~~~~~G~~VIDlS 132 (376)
++.+ .+.++|+||+|+....+..+.. .+.+.|.++|+.+
T Consensus 79 ~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 79 EKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp SHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2111 1358999999999876665555 4467888988765
No 233
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=93.26 E-value=0.48 Score=46.56 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=66.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC--CCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~--~~~DvVf~a~~~~~s~~ 116 (376)
.-||.|-|.||.-|.--.+...+. .-++++-+++...|+.+... .+++.+.-.+.. .++|+++.+.|.....+
T Consensus 29 ~t~v~vqGitg~~g~~h~~~~~~y---gt~iv~GV~Pgkgg~~v~~~--Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~d 103 (317)
T PTZ00187 29 NTKVICQGITGKQGTFHTEQAIEY---GTKMVGGVNPKKAGTTHLKH--GLPVFATVKEAKKATGADASVIYVPPPHAAS 103 (317)
T ss_pred CCeEEEecCCChHHHHHHHHHHHh---CCcEEEEECCCCCCceEecC--CccccCCHHHHhcccCCCEEEEecCHHHHHH
Confidence 479999999999999888877765 34677777777666655311 234432111111 24899999999999999
Q ss_pred hHHHHHhCCCe-EEEcCCCCC
Q 017153 117 FGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 117 ~~~~~~~~G~~-VIDlS~~~R 136 (376)
...++.++|++ +|-+|+-|.
T Consensus 104 ai~Ea~~aGI~~~ViiteGfp 124 (317)
T PTZ00187 104 AIIEAIEAEIPLVVCITEGIP 124 (317)
T ss_pred HHHHHHHcCCCEEEEECCCCc
Confidence 99999999988 455677663
No 234
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.26 E-value=0.24 Score=46.85 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=56.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCC-----------Cceeee--------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSA-----------GKQLSF--------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~-----------g~~~~~--------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.++++.|...+. -++..+- +.+.. |+.-.. ....+.+..
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv--g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV--GTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 479999999 9999999999988633 3444432 11122 221110 011233321
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
++++ .+.++|+||+|+....++.+...+ .+.++.+|+.+
T Consensus 109 ~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~ 154 (245)
T PRK05690 109 ARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGA 154 (245)
T ss_pred ccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEee
Confidence 2221 247899999999998887766544 57788988743
No 235
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.24 E-value=0.24 Score=48.95 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=48.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s-~~ 116 (376)
.++|||+|. |.+|+.+.+.|... ..++.+.. ++.. .... ..... .+. +.+.++|+|++|+|.... ..
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~---G~~V~~~d-~~~~-~~~~----~~~~~-~~l~ell~~aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 146 NMTVAIIGT-GRIGAATAKIYAGF---GATITAYD-AYPN-KDLD----FLTYK-DSVKEAIKDADIISLHVPANKESYH 214 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEEe-CChh-Hhhh----hhhcc-CCHHHHHhcCCEEEEeCCCcHHHHH
Confidence 368999998 99999999999864 35666543 2211 1000 01111 122 235799999999998753 11
Q ss_pred hH-HHH---HhCCCeEEEcC
Q 017153 117 FG-PIA---VEKGSIVVDNS 132 (376)
Q Consensus 117 ~~-~~~---~~~G~~VIDlS 132 (376)
.. ... .+.|+.+|+.+
T Consensus 215 li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 215 LFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred HHhHHHHhcCCCCcEEEEcC
Confidence 11 122 24577777654
No 236
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.24 E-value=0.38 Score=47.00 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|+||++|+.|++.|.+++ +..++..+.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~~ 37 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENY-NPKKIIIYS 37 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEEc
Confidence 3789999999999999999998762 124555443
No 237
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=93.21 E-value=0.25 Score=47.23 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=22.7
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
|.|.||||++|..|++.|.++++ .++.++
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~--~~v~~~ 29 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI--TDILVV 29 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC--ceEEEE
Confidence 57999999999999999988732 245444
No 238
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.21 E-value=0.15 Score=49.84 Aligned_cols=71 Identities=24% Similarity=0.336 Sum_probs=42.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCce--eeec---CcceEEeecCccCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQ--LSFQ---DKAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~--~~~~---~~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
|||+|+|+ |++|..++..|..++. .-+++++..... .|.. +... .....+...+.+++.++|+||+|.+..
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 58999998 9999999999887621 235555532211 1211 1000 011223333445678999999998863
No 239
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.20 E-value=0.24 Score=48.14 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=51.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee------c-----C------cceEEeecCcc-CCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF------Q-----D------KAYTVEELTED-SFD 100 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~------~-----~------~~~~v~~~~~~-~~~ 100 (376)
..||+|+|+ |.+|..+...|..+++ ++.++......-..... + . ..+... .+.. .+.
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ 78 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL---QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAAVS 78 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHHhc
Confidence 368999999 9999999999987643 55544321110000000 0 0 001221 1222 357
Q ss_pred CCcEEEEcCCCch--hhhhHHHH---HhCCCeEEEcCCCC
Q 017153 101 GVDIALFSAGGSI--SKKFGPIA---VEKGSIVVDNSSAF 135 (376)
Q Consensus 101 ~~DvVf~a~~~~~--s~~~~~~~---~~~G~~VIDlS~~~ 135 (376)
++|+||+|++... -.+....+ ...++.|+..++..
T Consensus 79 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~ 118 (311)
T PRK06130 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL 118 (311)
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 8999999998864 33444443 23455555565554
No 240
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=93.15 E-value=0.45 Score=45.29 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=25.0
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
||.|.|+||++|+.|++.|.+++ +..++.++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEec
Confidence 58999999999999999887652 245676553
No 241
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.10 E-value=1.1 Score=46.81 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=55.7
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCc-----------eeeecC----------cceEEeec
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGK-----------QLSFQD----------KAYTVEEL 94 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~-----------~~~~~~----------~~~~v~~~ 94 (376)
.+..||+|||+ |..|..+...|+.++ +++.+...... ..+ ....+. ..+... .
T Consensus 5 ~~i~~V~VIGa-G~MG~gIA~~la~aG---~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~ 79 (507)
T PRK08268 5 PSIATVAVIGA-GAMGAGIAQVAAQAG---HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-E 79 (507)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-C
Confidence 34568999999 999999999998764 45654432111 111 000000 012222 2
Q ss_pred CccCCCCCcEEEEcCCCchhhhhH--H---HHHhCCCeEEEcCCCCC
Q 017153 95 TEDSFDGVDIALFSAGGSISKKFG--P---IAVEKGSIVVDNSSAFR 136 (376)
Q Consensus 95 ~~~~~~~~DvVf~a~~~~~s~~~~--~---~~~~~G~~VIDlS~~~R 136 (376)
+.+++.++|+||.|.+.+...+.. . .+...++.+..+++...
T Consensus 80 ~~~~~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~ 126 (507)
T PRK08268 80 ALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS 126 (507)
T ss_pred CHHHhCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 344567999999999987764432 2 22345566656677765
No 242
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.04 E-value=0.43 Score=44.87 Aligned_cols=104 Identities=17% Similarity=0.309 Sum_probs=61.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEe----e
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVE----E 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~----~ 93 (376)
||.|+|+ |-+|.++++.|...++. ++..+- +.+..++.+-+ ...++.+. .
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg--~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFG--QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCC--eEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 5899998 99999999999887443 444332 11222221111 01122221 1
Q ss_pred cC------ccCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCCCCCcEEeecc
Q 017153 94 LT------EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVENVPLVIPEV 148 (376)
Q Consensus 94 ~~------~~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~~~~~~~lpev 148 (376)
++ .+.+.+.|+||.|++...++.+..++ ...++..||... .-+...+...+|+.
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~-~G~~G~v~vi~p~~ 138 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGT-EGFKGNAQVILPGM 138 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcc-cCCceEEEEEcCCC
Confidence 21 11247899999999998888877654 577899998543 33333334455543
No 243
>PRK06153 hypothetical protein; Provisional
Probab=92.96 E-value=0.23 Score=49.94 Aligned_cols=97 Identities=18% Similarity=0.311 Sum_probs=62.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCCCCcee-e----e-----------------cCcceEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSAGKQL-S----F-----------------QDKAYTVE 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~~g~~~-~----~-----------------~~~~~~v~ 92 (376)
..||+|+|+ |=+|..++..|... +.-++..+-. .+...+.+ . . -..++...
T Consensus 176 ~~~VaIVG~-GG~GS~Va~~LAR~--GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~ 252 (393)
T PRK06153 176 GQRIAIIGL-GGTGSYILDLVAKT--PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPH 252 (393)
T ss_pred hCcEEEEcC-CccHHHHHHHHHHc--CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEE
Confidence 469999999 88899999999987 5567766521 11111111 0 0 01112211
Q ss_pred --ecCcc---CCCCCcEEEEcCCCchhhhhHHH-HHhCCCeEEEcCCCCCCC
Q 017153 93 --ELTED---SFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNSSAFRMV 138 (376)
Q Consensus 93 --~~~~~---~~~~~DvVf~a~~~~~s~~~~~~-~~~~G~~VIDlS~~~R~~ 138 (376)
.++++ .+.++|+||+|++...++.+..+ +.+.|+.+||..-.....
T Consensus 253 ~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~~~ 304 (393)
T PRK06153 253 PEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLELS 304 (393)
T ss_pred eecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecceec
Confidence 22222 35789999999999999877654 457899999987666543
No 244
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.92 E-value=0.18 Score=49.97 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=54.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-C------CCceeeec--Cc----ceEEeecCc-cCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S------AGKQLSFQ--DK----AYTVEELTE-DSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~------~g~~~~~~--~~----~~~v~~~~~-~~~~~~Dv 104 (376)
++||+|+|+ |..|..+...|.+++ . ++....+. . .+...... +. .+.+. .+. +.+.++|+
T Consensus 7 ~mkI~IiGa-Ga~G~alA~~La~~g--~--v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t-~d~~~a~~~aDl 80 (341)
T PRK12439 7 EPKVVVLGG-GSWGTTVASICARRG--P--TLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRAT-TDFAEAANCADV 80 (341)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCC--C--EEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEE-CCHHHHHhcCCE
Confidence 479999999 999999999998763 2 22222111 1 01111100 00 12221 122 23568999
Q ss_pred EEEcCCCchhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 105 ALFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 105 Vf~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
||+|+|+....+..+++. ..+..||.++.-+
T Consensus 81 Vilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 81 VVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred EEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 999999988877777664 3455677776655
No 245
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=92.87 E-value=0.18 Score=51.49 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeec-C-ccCCCCCcEEEEcCCCchh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEEL-T-EDSFDGVDIALFSAGGSIS- 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~-~-~~~~~~~DvVf~a~~~~~s- 114 (376)
..+|+|+|+ |-+|+.+++.|... ..-++. +.+++.. ...+..... ..+... + .+.+.++|+||+|+|....
T Consensus 182 ~~~vlViGa-G~iG~~~a~~L~~~--G~~~V~-v~~r~~~ra~~la~~~g-~~~~~~~~~~~~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 182 GKKVLVIGA-GEMGELVAKHLAEK--GVRKIT-VANRTLERAEELAEEFG-GEAIPLDELPEALAEADIVISSTGAPHPI 256 (423)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHC--CCCeEE-EEeCCHHHHHHHHHHcC-CcEeeHHHHHHHhccCCEEEECCCCCCcE
Confidence 479999998 99999999999875 222443 3343311 111111000 011111 1 1234689999999987543
Q ss_pred --hhhHHHHHh----CCCeEEEcCCC
Q 017153 115 --KKFGPIAVE----KGSIVVDNSSA 134 (376)
Q Consensus 115 --~~~~~~~~~----~G~~VIDlS~~ 134 (376)
.++.+.... .+..+||++-+
T Consensus 257 i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 257 IGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 444444331 34789999865
No 246
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.83 E-value=0.25 Score=45.12 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
.++|.|.|+||.+|++|++.|.++++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999988744
No 247
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=92.72 E-value=0.23 Score=48.95 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=56.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cCcceEEee-cCc-cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEE-LTE-DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~~~~~v~~-~~~-~~~~~~DvVf~a~~~~~ 113 (376)
..+++|+|+ |..|+..++.|... ..++-+.+.+++... +.+.. ....+.+.. .+. +...++|+|++|+++..
T Consensus 128 ~~~lgiiG~-G~qA~~~l~al~~~--~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~ 204 (325)
T TIGR02371 128 SSVLGIIGA-GRQAWTQLEALSRV--FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK 204 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC
Confidence 589999997 99999988887665 445556666654221 11110 001122221 122 33579999999998753
Q ss_pred hhhhHHHHHhCCCeEEEcCCCC
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.-+....++.|+.|.-.+++.
T Consensus 205 -P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 205 -PVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred -cEecHHHcCCCCEEEecCCCC
Confidence 122234567899988777653
No 248
>PRK06141 ornithine cyclodeaminase; Validated
Probab=92.72 E-value=0.15 Score=50.07 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=51.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhc-CCCCCeEEEEEecCCC-CCceeeecC--cceEEee-cCcc-CCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRS-AGKQLSFQD--KAYTVEE-LTED-SFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~-~~~p~~~l~~v~s~~~-~g~~~~~~~--~~~~v~~-~~~~-~~~~~DvVf~a~~~~ 112 (376)
..+|+|+|+ |..|+..++.+.. + +..++. +.+++. ..+.+.... ....+.. .+.+ ...++|+|++|++..
T Consensus 125 ~~~v~iiG~-G~~a~~~~~al~~~~--~~~~V~-V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 125 ASRLLVVGT-GRLASLLALAHASVR--PIKQVR-VWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST 200 (314)
T ss_pred CceEEEECC-cHHHHHHHHHHHhcC--CCCEEE-EEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence 579999997 9999999986654 4 544554 444431 111111110 0111221 1222 357899999999976
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
. .-+....++.|. +||..+.+
T Consensus 201 ~-pvl~~~~l~~g~-~i~~ig~~ 221 (314)
T PRK06141 201 E-PLVRGEWLKPGT-HLDLVGNF 221 (314)
T ss_pred C-CEecHHHcCCCC-EEEeeCCC
Confidence 2 112234556777 67776654
No 249
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=92.70 E-value=0.21 Score=47.99 Aligned_cols=89 Identities=15% Similarity=0.254 Sum_probs=50.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCc---ceEEeecC-ccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDK---AYTVEELT-EDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~---~~~v~~~~-~~~~~~~DvVf~a~~~~~ 113 (376)
..+|.|+|+ |-+|+.+++.|... ...++..+ +++. ..+.+..... .+.+ ..+ .+.+.++|+|+.|+|.+.
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~--g~~~V~v~-~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDL--GVAEITIV-NRTVERAEELAKLFGALGKAEL-DLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHc--CCCEEEEE-eCCHHHHHHHHHHhhhccceee-cccchhccccCCEEEECCcCCC
Confidence 368999998 99999999999876 33455544 4431 1111111000 0122 112 133568999999999876
Q ss_pred hh-----hhHHHHHhCCCeEEEcC
Q 017153 114 SK-----KFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 114 s~-----~~~~~~~~~G~~VIDlS 132 (376)
.. ......+..+..|+|+.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEee
Confidence 42 12223344556666653
No 250
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=92.66 E-value=0.2 Score=48.52 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=54.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
+|||+||- |..|.-+.+.|.+.+| ++.+..-.... -......+ ........+...++|+||.|++.+..-+.+
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~---~v~v~~r~~~ka~~~~~~~G--a~~a~s~~eaa~~aDvVitmv~~~~~V~~V 74 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH---EVTVYNRTPEKAAELLAAAG--ATVAASPAEAAAEADVVITMLPDDAAVRAV 74 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC---EEEEEeCChhhhhHHHHHcC--CcccCCHHHHHHhCCEEEEecCCHHHHHHH
Confidence 58999997 9999999999988644 55544321111 11111111 111111123347899999999997664443
Q ss_pred H----HHH---hCCCeEEEcCCCC
Q 017153 119 P----IAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 119 ~----~~~---~~G~~VIDlS~~~ 135 (376)
- -+. +.|..+||+|..-
T Consensus 75 ~~g~~g~~~~~~~G~i~IDmSTis 98 (286)
T COG2084 75 LFGENGLLEGLKPGAIVIDMSTIS 98 (286)
T ss_pred HhCccchhhcCCCCCEEEECCCCC
Confidence 2 122 3688999999863
No 251
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=92.66 E-value=0.24 Score=42.35 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=29.9
Q ss_pred EEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSA 78 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~ 78 (376)
|+|+|+||-+|.+.++.+.++ | .|++++++..++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~--~d~f~v~~Lsa~~n~ 36 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKH--PDKFEVVALSAGSNI 36 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHC--TTTEEEEEEEESSTH
T ss_pred CEEEcCCcHHHHHHHHHHHhC--CCceEEEEEEcCCCH
Confidence 689999999999999999987 6 6999998765443
No 252
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=92.65 E-value=0.2 Score=51.25 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=51.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCce-eee-cC------cceEEeecCccCCCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQ-LSF-QD------KAYTVEELTEDSFDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~~-~~~-~~------~~~~v~~~~~~~~~~~DvV 105 (376)
|||+|+|- ||+|.-+...|... .++..+.-... .|.. +.+ .. ..+.+.. +.+...++|++
T Consensus 7 mkI~vIGl-GyvGlpmA~~la~~----~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~-~~~~~~~advv 80 (425)
T PRK15182 7 VKIAIIGL-GYVGLPLAVEFGKS----RQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTS-EIEKIKECNFY 80 (425)
T ss_pred CeEEEECc-CcchHHHHHHHhcC----CEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEe-CHHHHcCCCEE
Confidence 78999996 99999999988752 46665532211 1111 000 00 0112221 22335789999
Q ss_pred EEcCCCchhh------hhH-------HHHHhCCCeEEEcCCCC
Q 017153 106 LFSAGGSISK------KFG-------PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 106 f~a~~~~~s~------~~~-------~~~~~~G~~VIDlS~~~ 135 (376)
|.|+|+.... +++ ...+..|..||+-|.-.
T Consensus 81 ii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 81 IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred EEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 9999976311 111 12235688899887654
No 253
>PRK07574 formate dehydrogenase; Provisional
Probab=92.59 E-value=0.3 Score=49.39 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=49.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
.++|+|+|. |.+|+.+++.|..- .+++.+.. +.......... ...... .+.+ .+..+|+|++++|-....+.
T Consensus 192 gktVGIvG~-G~IG~~vA~~l~~f---G~~V~~~d-r~~~~~~~~~~-~g~~~~-~~l~ell~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 192 GMTVGIVGA-GRIGLAVLRRLKPF---DVKLHYTD-RHRLPEEVEQE-LGLTYH-VSFDSLVSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEEC-CCCCchhhHhh-cCceec-CCHHHHhhcCCEEEEcCCCCHHHHH
Confidence 378999998 99999999999764 45665543 22111111000 011111 1223 35799999999997554222
Q ss_pred H---HH--HHhCCCeEEEcC
Q 017153 118 G---PI--AVEKGSIVVDNS 132 (376)
Q Consensus 118 ~---~~--~~~~G~~VIDlS 132 (376)
. +. ..+.|+.+|+.+
T Consensus 265 li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 265 LFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred HhCHHHHhcCCCCcEEEECC
Confidence 1 11 124566666544
No 254
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.59 E-value=0.25 Score=47.25 Aligned_cols=90 Identities=13% Similarity=0.207 Sum_probs=50.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeec--C-cceEEeecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ--D-KAYTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~--~-~~~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
..++.|+|+ |-+|+.++..|.+. . .++..+ +++. ..+.+... . ........+.....++|+||.|+|.+..
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~--g-~~v~v~-~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~ 191 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKA--D-CNVIIA-NRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMS 191 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHC--C-CEEEEE-eCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCC
Confidence 368999998 89999999999876 3 355544 3321 11111110 0 0112222222223578999999998643
Q ss_pred hhh-----HHHHHhCCCeEEEcCC
Q 017153 115 KKF-----GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 115 ~~~-----~~~~~~~G~~VIDlS~ 133 (376)
... ....+..|..|+|++.
T Consensus 192 ~~~~~~~~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 192 GNIDEPPVPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCHHHcCCCCEEEEecc
Confidence 221 1233456777777754
No 255
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.53 E-value=0.23 Score=54.95 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC------CCCeEEEEEecCCCCCceeeecCcc---e------EEeecCccC----
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD------FPYRSIKMLASKRSAGKQLSFQDKA---Y------TVEELTEDS---- 98 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~------~p~~~l~~v~s~~~~g~~~~~~~~~---~------~v~~~~~~~---- 98 (376)
++++|+|+|. |.||+.++++|.++. .-.++++.+..++.. .+...+-+ + .....+.+.
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKM--LLDEHGIDLDNWREELAEAGEPFDLDRLIRL 540 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCcc--ccCCCCCCHHHHHHHHhhccCCCCHHHHHHH
Confidence 4699999998 999999999986541 014566666543211 11110000 0 000111111
Q ss_pred CC----CCcEEEEcCCCchhhhhHHHHHhCCCeEEE
Q 017153 99 FD----GVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 99 ~~----~~DvVf~a~~~~~s~~~~~~~~~~G~~VID 130 (376)
.. ..||+++|++......+..+++++|+.||-
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVt 576 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVT 576 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEc
Confidence 11 358999999986666666788999999994
No 256
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.45 E-value=0.75 Score=44.50 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=59.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|+. +++ .+....+|+|+.|.|.-.- +-
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~---~atVtichs~T----------~~l------~~~~~~ADIvI~AvG~p~~--i~ 214 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNH---DATVTIAHSKT----------RNL------KQLTKEADILVVAVGVPHF--IG 214 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEECCCC----------CCH------HHHHhhCCEEEEccCCcCc--cC
Confidence 479999999999999999999875 34544332211 011 1223688999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
....+.|+.|||.+-.+ ..++ -.+-.++.+.+.
T Consensus 215 ~~~vk~GavVIDvGin~-~~~g--kl~GDVd~~~v~ 247 (282)
T PRK14169 215 ADAVKPGAVVIDVGISR-GADG--KLLGDVDEAAVA 247 (282)
T ss_pred HHHcCCCcEEEEeeccc-cCCC--CeeecCcHHHHH
Confidence 34567899999988764 2222 245566766665
No 257
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=92.44 E-value=0.36 Score=47.33 Aligned_cols=84 Identities=7% Similarity=0.083 Sum_probs=49.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-Cc-cCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
..+|+|+|. |.+|+++.+.|..- .+++.++.......... ..+... +. +.+.++|+|++|+|.+..-.
T Consensus 136 g~tvgIvG~-G~IG~~vA~~l~af---G~~V~~~~~~~~~~~~~------~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~ 205 (312)
T PRK15469 136 DFTIGILGA-GVLGSKVAQSLQTW---GFPLRCWSRSRKSWPGV------QSFAGREELSAFLSQTRVLINLLPNTPETV 205 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEeCCCCCCCCc------eeecccccHHHHHhcCCEEEECCCCCHHHH
Confidence 379999998 99999999999864 45666553211110000 011111 12 23578999999999866532
Q ss_pred hH-H--HH--HhCCCeEEEcC
Q 017153 117 FG-P--IA--VEKGSIVVDNS 132 (376)
Q Consensus 117 ~~-~--~~--~~~G~~VIDlS 132 (376)
.. . .+ .+.|+.+|+.+
T Consensus 206 ~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 206 GIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHhHHHHHhcCCCCcEEEECC
Confidence 21 1 11 24577777654
No 258
>PRK06046 alanine dehydrogenase; Validated
Probab=92.42 E-value=0.25 Score=48.71 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=57.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeec-Cc--ceEEeec-CccC-CCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQ-DK--AYTVEEL-TEDS-FDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~-~~--~~~v~~~-~~~~-~~~~DvVf~a~~~~ 112 (376)
..+|+|+|+ |..|+..++.+... +.++.+.+.+++... +.+... .. ...+... +.++ +. +|+|+.|||+.
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~--~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~ 204 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEV--FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR 204 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhh--CCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC
Confidence 579999997 99999999988765 678888888765321 111110 00 1222211 2222 34 99999999985
Q ss_pred hhhhhHHHHHhCCCeEEEcCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
. .-+....++.|+.|.-.+++
T Consensus 205 ~-P~~~~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 205 K-PVVKAEWIKEGTHINAIGAD 225 (326)
T ss_pred C-cEecHHHcCCCCEEEecCCC
Confidence 4 22233445789988877765
No 259
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.41 E-value=0.19 Score=49.16 Aligned_cols=90 Identities=13% Similarity=0.284 Sum_probs=53.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--------Cceeee-cC----cceEEeecCc-cCC-CCCcE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLSF-QD----KAYTVEELTE-DSF-DGVDI 104 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--------g~~~~~-~~----~~~~v~~~~~-~~~-~~~Dv 104 (376)
|||+|+|| |.+|..+...|.+.++ ++..+ +++.. ++.... .+ ..+.+.. +. +.. .++|+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~---~V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~Dl 74 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI---SVNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKS-AIDEVLSDNATC 74 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC---eEEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeC-CHHHHHhCCCCE
Confidence 57999999 9999999999987643 44433 33211 001100 00 0112211 22 223 47899
Q ss_pred EEEcCCCchhhhhHHHHHh----CCCeEEEcCCCC
Q 017153 105 ALFSAGGSISKKFGPIAVE----KGSIVVDNSSAF 135 (376)
Q Consensus 105 Vf~a~~~~~s~~~~~~~~~----~G~~VIDlS~~~ 135 (376)
+|+|+++....+..+++.+ ....||-+..-+
T Consensus 75 iiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 75 IILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 9999999988887776654 344566555554
No 260
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.41 E-value=0.25 Score=48.39 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=42.7
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCC--CCCceee--e----cC-cceEEeecCccCCCCCcEEEEcCC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKR--SAGKQLS--F----QD-KAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~--~~g~~~~--~----~~-~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
||+|+|+ |.||..++..|..+ +.+ +++.+--.. ..|.... + .. .+..+..-+.+++.++|+|+.+.+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~--~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALAL--GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 6999999 99999999888766 443 676654221 2222111 1 11 133444334567889999999877
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 78 ~ 78 (307)
T cd05290 78 P 78 (307)
T ss_pred C
Confidence 5
No 261
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.37 E-value=0.29 Score=47.18 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=74.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCc---e-------ee---ecCc-----------ceEEeec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGK---Q-------LS---FQDK-----------AYTVEEL 94 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~---~-------~~---~~~~-----------~~~v~~~ 94 (376)
.||+|+|+ |.+|..+...|+.+++ ++.++.... ...+ . +. ..+. .+... .
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~ 78 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY---DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-T 78 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-C
Confidence 58999999 9999999999988744 555443111 1100 0 00 0000 01111 1
Q ss_pred CccCCCCCcEEEEcCCCchh--hhhHHHH---HhCCCeEEEcCCCCCCCC---C--Cc---EEeeccCHHhhcCcccCCC
Q 017153 95 TEDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRMVE---N--VP---LVIPEVNPEAMSGIKVGMG 161 (376)
Q Consensus 95 ~~~~~~~~DvVf~a~~~~~s--~~~~~~~---~~~G~~VIDlS~~~R~~~---~--~~---~~lpevN~~~i~~~~~~~~ 161 (376)
+.+.+.++|+||+|.+.... .++..++ ...++.++.+++.+.... . .+ .++=-+|+..+..
T Consensus 79 ~~~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~------ 152 (291)
T PRK06035 79 SYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMK------ 152 (291)
T ss_pred CHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCc------
Confidence 22345789999999988752 3433333 345777888888765321 0 01 3333344333321
Q ss_pred CCcEEEcCCchHHHHHHHHhHHHHhCCCcEE
Q 017153 162 KGALIANPNCSTIICLMAATPLHRRAKVTRM 192 (376)
Q Consensus 162 ~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v 192 (376)
...++..+...... .-.+.++.+..+-..+
T Consensus 153 ~vEv~~g~~T~~e~-~~~~~~~~~~lgk~~v 182 (291)
T PRK06035 153 LIEVVRAALTSEET-FNTTVELSKKIGKIPI 182 (291)
T ss_pred cEEEeCCCCCCHHH-HHHHHHHHHHcCCeEE
Confidence 23355444443333 3346677776554333
No 262
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.35 E-value=0.77 Score=44.46 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=60.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....+.. .++ .+....+|+|+.|+|.-.- .-
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~---~atVt~chs~t----------~~l------~~~~~~ADIvI~AvG~p~~--i~ 216 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNE---NATVTYCHSKT----------KNL------AELTKQADILIVAVGKPKL--IT 216 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEEeCCc----------hhH------HHHHHhCCEEEEecCCCCc--CC
Confidence 489999999999999999999875 34554332211 011 1234689999999876432 33
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ .+++ -.+-.++.+.++
T Consensus 217 ~~~ik~gavVIDvGi~~-~~~g--kl~GDvd~e~v~ 249 (284)
T PRK14190 217 ADMVKEGAVVIDVGVNR-LENG--KLCGDVDFDNVK 249 (284)
T ss_pred HHHcCCCCEEEEeeccc-cCCC--CeeccCcHHHHh
Confidence 45567899999988664 2221 244556766655
No 263
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.34 E-value=0.5 Score=50.50 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=25.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
|||.|.||||++|+.|++.|..++ ...++.++..
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~R 34 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLVR 34 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 589999999999999999888421 2446666653
No 264
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.33 E-value=0.053 Score=49.12 Aligned_cols=70 Identities=13% Similarity=0.253 Sum_probs=35.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC------CCCce-eee---------c--CcceEEeecCccC-CC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------SAGKQ-LSF---------Q--DKAYTVEELTEDS-FD 100 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~------~~g~~-~~~---------~--~~~~~v~~~~~~~-~~ 100 (376)
|||+|+|. ||+|.-+.-.|++++| ++.++--.. ..|+. +.+ . ...+.+.. +.+. ..
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~---~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~-~~~~ai~ 75 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH---QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATT-DIEEAIK 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS---EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEES-EHHHHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC---EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhh-hhhhhhh
Confidence 79999998 9999999999998754 666653211 11211 111 0 12233321 2222 46
Q ss_pred CCcEEEEcCCCchh
Q 017153 101 GVDIALFSAGGSIS 114 (376)
Q Consensus 101 ~~DvVf~a~~~~~s 114 (376)
++|++|.|.|+...
T Consensus 76 ~adv~~I~VpTP~~ 89 (185)
T PF03721_consen 76 DADVVFICVPTPSD 89 (185)
T ss_dssp H-SEEEE----EBE
T ss_pred ccceEEEecCCCcc
Confidence 89999999987543
No 265
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.31 E-value=0.51 Score=43.20 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=56.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCC-----------Cceeee--------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSA-----------GKQLSF--------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~-----------g~~~~~--------~~~~~~v~--- 92 (376)
..||.|+|+ |-+|.++++.|...+. -++..+-.. +.. |+.-.. ....+.+.
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv--~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGV--GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC--CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 478999998 9999999999988733 344443211 111 211100 01122222
Q ss_pred -ecCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 93 -ELTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 93 -~~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
.++.+ .+.++|+||+|++...++.+..++ .+.++.+|+.+.
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAV 144 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 12221 246899999999988777766654 577888888654
No 266
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.22 E-value=0.49 Score=46.66 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=53.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc---eee--------ec---C---cceEEeecCc-cCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK---QLS--------FQ---D---KAYTVEELTE-DSF 99 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~---~~~--------~~---~---~~~~v~~~~~-~~~ 99 (376)
..||||||+ |.+|..+...++.++ +++.+.... ....+ .+. .+ . ..+.+.. +. +.+
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG---~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~av 81 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHG---LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEACV 81 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHHh
Confidence 468999998 999999999998864 456544321 11100 000 00 0 0122211 22 235
Q ss_pred CCCcEEEEcCCCchhhhhH-----HHHHhCCCeEEEcCCCCC
Q 017153 100 DGVDIALFSAGGSISKKFG-----PIAVEKGSIVVDNSSAFR 136 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~~~~-----~~~~~~G~~VIDlS~~~R 136 (376)
.++|+|+.|.+-....+.. .++...++.+-.+|+.+.
T Consensus 82 ~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~ 123 (321)
T PRK07066 82 ADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLL 123 (321)
T ss_pred cCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccC
Confidence 7999999999987653321 233345675666666664
No 267
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.14 E-value=1 Score=43.71 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=52.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|+. +++ .+....+|+|+.|.|...- .-
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~---~aTVtichs~T----------~~l------~~~~~~ADIvIsAvGkp~~--i~ 213 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLRE---DATVTLAHSKT----------QDL------PAVTRRADVLVVAVGRPHL--IT 213 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEecCCcCc--cC
Confidence 479999999999999999999865 34554333221 011 1224679999999976432 23
Q ss_pred HHHHhCCCeEEEcCCCC
Q 017153 119 PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~ 135 (376)
+...+.|+.|||..-.+
T Consensus 214 ~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 214 PEMVRPGAVVVDVGINR 230 (287)
T ss_pred HHHcCCCCEEEEccCcc
Confidence 45567899999988664
No 268
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.12 E-value=0.34 Score=47.55 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceee--ec---CcceEEee-cCccCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLS--FQ---DKAYTVEE-LTEDSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~--~~---~~~~~v~~-~~~~~~~~~DvVf~a~~ 110 (376)
.+||+|+|+ |.||..++-.|...+. ..+++.+--.. ..|.... .. .....+.. .+.+++.++|+|+.+.+
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~-~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG 80 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGL-ADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAG 80 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCC
Confidence 479999998 9999999998876622 34676654322 1222111 00 01113332 34556889999999876
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 81 ~ 81 (312)
T cd05293 81 A 81 (312)
T ss_pred C
Confidence 5
No 269
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.10 E-value=0.91 Score=43.96 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=60.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+-+..+|.++ ...+....+.. +++ .+....+|+|+.|+|...- .-
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~---gAtVtv~hs~t----------~~l------~~~~~~ADIvV~AvG~p~~--i~ 215 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNA---GASVSVCHILT----------KDL------SFYTQNADIVCVGVGKPDL--IK 215 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC---CCEEEEEeCCc----------HHH------HHHHHhCCEEEEecCCCCc--CC
Confidence 489999999889999999999875 34554332211 111 1234689999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++.+.+.
T Consensus 216 ~~~vk~GavVIDvGi~~-~~~g--klvGDvd~e~v~ 248 (285)
T PRK14191 216 ASMVKKGAVVVDIGINR-LNDG--RLVGDVDFENVA 248 (285)
T ss_pred HHHcCCCcEEEEeeccc-ccCC--ceeccccHHHHh
Confidence 34567899999998765 1111 245556666655
No 270
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.05 E-value=0.16 Score=45.72 Aligned_cols=140 Identities=14% Similarity=0.155 Sum_probs=70.5
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cc---eeee--------c----------CcceEEeecCccC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GK---QLSF--------Q----------DKAYTVEELTEDS 98 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~---~~~~--------~----------~~~~~v~~~~~~~ 98 (376)
||+|+|+ |..|+.+...++.+ ..++.++...... .+ .+.. + ...+.+. .+.++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~---G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~ 75 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARA---GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEE 75 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHT---TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhC---CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHH
Confidence 7999999 99999999999886 3466655322111 00 0000 0 0123333 23445
Q ss_pred CCCCcEEEEcCCCchhhh--hHHHHH---hCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCCCcE
Q 017153 99 FDGVDIALFSAGGSISKK--FGPIAV---EKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGKGAL 165 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~s~~--~~~~~~---~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~~~i 165 (376)
+.++|+||.|.+-....+ ...++. ...+.+..+|+.+-..+ +--.++=-+|+..+.+ -..+
T Consensus 76 ~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~------lVEv 149 (180)
T PF02737_consen 76 AVDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP------LVEV 149 (180)
T ss_dssp GCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--------EEEE
T ss_pred HhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc------eEEE
Confidence 569999999998766533 223332 35778888888875432 1124555555554332 2457
Q ss_pred EEcCCchHHHHHHHHhHHHHhCCCcEE
Q 017153 166 IANPNCSTIICLMAATPLHRRAKVTRM 192 (376)
Q Consensus 166 Va~PgC~~ta~~l~L~pL~~~~~i~~v 192 (376)
|.++....-.+..+. -|.+..+-..+
T Consensus 150 v~~~~T~~~~~~~~~-~~~~~~gk~pv 175 (180)
T PF02737_consen 150 VPGPKTSPETVDRVR-ALLRSLGKTPV 175 (180)
T ss_dssp EE-TTS-HHHHHHHH-HHHHHTT-EEE
T ss_pred eCCCCCCHHHHHHHH-HHHHHCCCEEE
Confidence 777776655554443 34444443333
No 271
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.04 E-value=0.42 Score=47.07 Aligned_cols=70 Identities=16% Similarity=0.336 Sum_probs=42.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeee------cCcceEEee-cCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~------~~~~~~v~~-~~~~~~~~~DvVf~a~ 109 (376)
+.||+|+|| |.+|..+...+..+++ .+++.+--.. ..|+.+.. .+....+.. .+.+++.++|+|+.+.
T Consensus 6 ~~KI~IIGa-G~vG~~ia~~la~~gl--~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 6 RRKISLIGS-GNIGGVMAYLIVLKNL--GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTA 82 (321)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECC
Confidence 469999997 9999999998887632 4655443211 11221110 111234443 3445678999999987
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 83 g~ 84 (321)
T PTZ00082 83 GL 84 (321)
T ss_pred CC
Confidence 54
No 272
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=92.02 E-value=0.24 Score=50.28 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecC--ccCCCCCcEEEEcCCCch--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSI-- 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~--~~~~~~~DvVf~a~~~~~-- 113 (376)
..||.|+|| |-+|..+++.|.++ ...++ .++.|.. ..+.+..... ..+..++ .+.+..+|+||+||++..
T Consensus 178 ~~~vlvIGA-Gem~~lva~~L~~~--g~~~i-~IaNRT~erA~~La~~~~-~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 178 DKKVLVIGA-GEMGELVAKHLAEK--GVKKI-TIANRTLERAEELAKKLG-AEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred cCeEEEEcc-cHHHHHHHHHHHhC--CCCEE-EEEcCCHHHHHHHHHHhC-CeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence 478999999 99999999999987 33444 4554432 1222221101 1122222 234578999999986643
Q ss_pred -hhhhHHHHHhC--CCeEEEcCCC
Q 017153 114 -SKKFGPIAVEK--GSIVVDNSSA 134 (376)
Q Consensus 114 -s~~~~~~~~~~--G~~VIDlS~~ 134 (376)
..+.++...+. ...+||++-+
T Consensus 253 i~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 253 ITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred cCHHHHHHHHhcccCeEEEEecCC
Confidence 33334433321 2469999876
No 273
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.96 E-value=0.48 Score=44.67 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=56.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCCCCceeee-------------------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSAGKQLSF-------------------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~~g~~~~~-------------------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.+++..|...+. -++..+-. .+..++.+-+ ....+.+..
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv--g~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV--GNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC--CEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 479999999 9999999999987633 34444321 1112211110 011223322
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
++.+ .+.++|+||+|++...++.+...+ .+.|+++|..+.
T Consensus 101 ~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~ 147 (240)
T TIGR02355 101 AKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAA 147 (240)
T ss_pred ccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 2221 246899999999998887766544 578899987543
No 274
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.95 E-value=0.87 Score=44.03 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=60.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|+. +++ .+....+|+|+.|.|.. .-.-
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~---~AtVtichs~T----------~nl------~~~~~~ADIvI~AvGk~--~~i~ 215 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLER---HATVTIAHSRT----------ADL------AGEVGRADILVAAIGKA--ELVK 215 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEecCCc--CccC
Confidence 479999999999999999999875 34444332211 011 12236799999999862 2333
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+-.+ + -.+-.++.+...
T Consensus 216 ~~~ik~gaiVIDvGin~~~~-g--kl~GDVd~~~v~ 248 (282)
T PRK14182 216 GAWVKEGAVVIDVGMNRLAD-G--KLVGDVEFAAAA 248 (282)
T ss_pred HHHcCCCCEEEEeeceecCC-C--CeeCCCCHHHHH
Confidence 45678899999988765212 1 255666766665
No 275
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=91.86 E-value=0.4 Score=46.12 Aligned_cols=69 Identities=22% Similarity=0.401 Sum_probs=39.7
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCC-CCcEEEEcCCCchhhh
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFD-GVDIALFSAGGSISKK 116 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~-~~DvVf~a~~~~~s~~ 116 (376)
|.|-|+||++|+.|...|..++| ++..++.+... ......... ....+ .+... ++|+|+--.|.....+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh---~v~iltR~~~~~~~~~~~~v~--~~~~~-~~~~~~~~DavINLAG~~I~~r 71 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH---QVTILTRRPPKASQNLHPNVT--LWEGL-ADALTLGIDAVINLAGEPIAER 71 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC---eEEEEEcCCcchhhhcCcccc--ccchh-hhcccCCCCEEEECCCCccccc
Confidence 57999999999999999987655 55555422111 111110000 01111 11223 6999998877766655
No 276
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.83 E-value=1.4 Score=39.37 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=53.7
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCCCceeee------------------cCcceEEe----ec
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSAGKQLSF------------------QDKAYTVE----EL 94 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~g~~~~~------------------~~~~~~v~----~~ 94 (376)
||+|+|+ |-+|.+++..|...+.. ++..+-.+ +..++.+.. ....+.+. .+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg--~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~ 77 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVG--NLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKI 77 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCC--eEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeec
Confidence 6899999 99999999999887443 34433211 122211100 01122221 22
Q ss_pred Cc----cCCCCCcEEEEcCCCchhhh-hHHHHHhC-CCeEEEcCCC
Q 017153 95 TE----DSFDGVDIALFSAGGSISKK-FGPIAVEK-GSIVVDNSSA 134 (376)
Q Consensus 95 ~~----~~~~~~DvVf~a~~~~~s~~-~~~~~~~~-G~~VIDlS~~ 134 (376)
+. +.+.++|+||+|++...++. +...+.+. ++.+|-.++.
T Consensus 78 ~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 78 DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehh
Confidence 22 12578999999998887765 34455565 8888865443
No 277
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.81 E-value=0.84 Score=44.19 Aligned_cols=88 Identities=14% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+...-|+. +++ .+....+|+|+.|.|...- +-
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~---~atVt~chs~T----------~~l------~~~~~~ADIvIsAvGk~~~--i~ 217 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEM---NATVTLCHSKT----------QNL------PSIVRQADIIVGAVGKPEF--IK 217 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEeCCCcCc--cC
Confidence 479999999999999999999875 34544332211 011 1223689999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
....+.|+.|||.+-.+.+ +-.++.+.+.
T Consensus 218 ~~~ik~gavVIDvGin~~~-------~GDVd~~~v~ 246 (284)
T PRK14177 218 ADWISEGAVLLDAGYNPGN-------VGDIEISKAK 246 (284)
T ss_pred HHHcCCCCEEEEecCcccc-------cCCcCHHHHh
Confidence 4456789999999876632 3345555554
No 278
>PRK13243 glyoxylate reductase; Reviewed
Probab=91.76 E-value=0.27 Score=48.69 Aligned_cols=85 Identities=11% Similarity=0.109 Sum_probs=49.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhh-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISK-K 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~-~ 116 (376)
..+|+|+|. |.+|+.+.+.|..- ..++.+. ++..... .... ...... +.+ .+.++|+|++|+|..... .
T Consensus 150 gktvgIiG~-G~IG~~vA~~l~~~---G~~V~~~-d~~~~~~-~~~~-~~~~~~--~l~ell~~aDiV~l~lP~t~~T~~ 220 (333)
T PRK13243 150 GKTIGIIGF-GRIGQAVARRAKGF---GMRILYY-SRTRKPE-AEKE-LGAEYR--PLEELLRESDFVSLHVPLTKETYH 220 (333)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHC---CCEEEEE-CCCCChh-hHHH-cCCEec--CHHHHHhhCCEEEEeCCCChHHhh
Confidence 489999998 99999999999864 3466543 3322111 0000 011111 222 357899999999975432 1
Q ss_pred hH-HHH---HhCCCeEEEcC
Q 017153 117 FG-PIA---VEKGSIVVDNS 132 (376)
Q Consensus 117 ~~-~~~---~~~G~~VIDlS 132 (376)
.. .+. .+.|+.+|+.|
T Consensus 221 ~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 221 MINEERLKLMKPTAILVNTA 240 (333)
T ss_pred ccCHHHHhcCCCCeEEEECc
Confidence 11 111 24577777654
No 279
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.69 E-value=0.23 Score=48.93 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=26.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++||.|.|||||+|..|++.|.+++ .+++++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d 46 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN---QTVIGLD 46 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEe
Confidence 4799999999999999999999863 3666554
No 280
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.66 E-value=0.5 Score=46.44 Aligned_cols=70 Identities=13% Similarity=0.331 Sum_probs=42.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeee------cCcceEEee-cCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~------~~~~~~v~~-~~~~~~~~~DvVf~a~ 109 (376)
.+||+|+|| |.+|..+...|..++ ..+++.+--.. ..|..+.. .+....+.. .+.+++.++|+|+.+.
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~--~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVita 81 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKN--LGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITA 81 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCC--CCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECC
Confidence 579999998 999999999888763 24655543221 12222110 111223332 3445678999999998
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 82 g~ 83 (319)
T PTZ00117 82 GV 83 (319)
T ss_pred CC
Confidence 54
No 281
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.62 E-value=0.34 Score=45.17 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=49.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce-eeecCcceE-E--eecCccC-----CCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYT-V--EELTEDS-----FDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~-~~~~~~~~~-v--~~~~~~~-----~~~~DvVf~a~~ 110 (376)
|++.|+|+ |.+|..+.+.|.+.+| +++.+-.....-.. .... .+.. + ...+++. +.++|+++.+++
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~---~Vv~Id~d~~~~~~~~~~~-~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH---NVVLIDRDEERVEEFLADE-LDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC---ceEEEEcCHHHHHHHhhhh-cceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 68999999 9999999999998744 56655433221111 1100 1111 1 1223221 468999999999
Q ss_pred CchhhhhHHHHH-h-CCCe
Q 017153 111 GSISKKFGPIAV-E-KGSI 127 (376)
Q Consensus 111 ~~~s~~~~~~~~-~-~G~~ 127 (376)
.+..--.+-.+. + .|++
T Consensus 76 ~d~~N~i~~~la~~~~gv~ 94 (225)
T COG0569 76 NDEVNSVLALLALKEFGVP 94 (225)
T ss_pred CCHHHHHHHHHHHHhcCCC
Confidence 976544444332 3 4655
No 282
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=91.50 E-value=0.47 Score=46.72 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=26.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+||.|.|+||++|+.|++.|.+++ .+++++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~ 41 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG---YTVHATL 41 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 5899999999999999999998863 3565543
No 283
>PLN02572 UDP-sulfoquinovose synthase
Probab=91.34 E-value=0.38 Score=49.35 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=39.6
Q ss_pred cccccccccCCCCCCCceeeecc------CCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 11 THFISKLPANKPRTKPMFTRVRM------SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
..|-|.-|+....| |..|.+-- +..-+.++|.|.||||++|+.|++.|.+.+ .+++++
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~ 77 (442)
T PLN02572 14 KAFTSASPASAQST-PAVTELATPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRG---YEVAIV 77 (442)
T ss_pred hhhccCCccccccc-cceecccCCCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEE
Confidence 45777777765544 44554411 122245899999999999999999998863 466654
No 284
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=91.33 E-value=0.34 Score=44.05 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEECcccHHHHHHHHHHhcCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
|.|+|||||+|..|++.|.++++
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~ 23 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH 23 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT
T ss_pred EEEEccCCHHHHHHHHHHHHcCC
Confidence 68999999999999999998743
No 285
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=91.28 E-value=1.2 Score=43.35 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=61.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|-+..+|+=|..+|.++ +..+...-|.. +++ .+....+|+|+.|.|.. .-+-
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~---~ATVtvchs~T----------~nl------~~~~~~ADIvv~AvGk~--~~i~ 225 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKA---DATVTVVHSRT----------PDP------ESIVREADIVIAAAGQA--MMIK 225 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEcCCCc--CccC
Confidence 489999999999999999999875 34555443321 011 12246889999998773 2333
Q ss_pred HHHHhCCCeEEEcCCCCCCCCC---CcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVEN---VPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~---~~~~lpevN~~~i~ 154 (376)
....+.|+.|||.+-.+..++. ..-.+-.++.+.+.
T Consensus 226 ~~~vk~gavVIDvGin~~~~~~~~~g~kl~GDvd~e~v~ 264 (299)
T PLN02516 226 GDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDFAEVS 264 (299)
T ss_pred HHHcCCCCEEEEeeccccCcccccCCCceEcCcChHHhh
Confidence 4567789999998876532210 11245556666665
No 286
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.24 E-value=0.21 Score=50.15 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=42.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCc-eeee---------cCcc--eEEeecC-ccCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGK-QLSF---------QDKA--YTVEELT-EDSFD 100 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~-~~~~---------~~~~--~~v~~~~-~~~~~ 100 (376)
|||+|+|. ||||....-.|++++| +++++--... .|+ ++.+ .... +.+.. | .+.+.
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH---eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d~~~a~~ 75 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH---EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-DYEEAVK 75 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC---eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-CHHHHHh
Confidence 78999996 9999999999998876 5655531111 111 2211 1111 33321 2 22357
Q ss_pred CCcEEEEcCCCch
Q 017153 101 GVDIALFSAGGSI 113 (376)
Q Consensus 101 ~~DvVf~a~~~~~ 113 (376)
++|++|.|+|+..
T Consensus 76 ~adv~fIavgTP~ 88 (414)
T COG1004 76 DADVVFIAVGTPP 88 (414)
T ss_pred cCCEEEEEcCCCC
Confidence 8999999988743
No 287
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.16 E-value=1.2 Score=43.12 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=60.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|+. +++ .+....+|+|+.|.|.--- +-
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~---~atVtichs~T----------~~l------~~~~~~ADIvI~AvG~~~~--i~ 215 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNE---NATVTIAHSRT----------KDL------PQVAKEADILVVATGLAKF--VK 215 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEecCCcCc--cC
Confidence 479999999999999999998865 34554333211 011 1224688999999877432 23
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++.+...
T Consensus 216 ~~~vk~GavVIDvGin~-~~~g--kl~GDvdfe~~~ 248 (284)
T PRK14170 216 KDYIKPGAIVIDVGMDR-DENN--KLCGDVDFDDVV 248 (284)
T ss_pred HHHcCCCCEEEEccCcc-cCCC--CeecccchHHHH
Confidence 45567899999988765 1121 245556766655
No 288
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=91.14 E-value=0.83 Score=43.55 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=58.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-----CCCceee----------ecC---cce-----EEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-----SAGKQLS----------FQD---KAY-----TVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-----~~g~~~~----------~~~---~~~-----~v~~~~ 95 (376)
..||+|-|+ |.||+.+++.|.+. ..+++++++.+ ..|-.+. ..+ ... .....+
T Consensus 38 g~~vaIqGf-GnVG~~~a~~L~e~---GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~ 113 (254)
T cd05313 38 GKRVAISGS-GNVAQYAAEKLLEL---GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE 113 (254)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence 589999999 99999999999885 57888776521 1111100 000 000 011223
Q ss_pred ccC-C-CCCcEEEEc-CCCchhhhhHHHHHhCCCeEEEcCC
Q 017153 96 EDS-F-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 96 ~~~-~-~~~DvVf~a-~~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
+++ | .+|||.+-| ++.....+.++++.+.+|++|-=.+
T Consensus 114 ~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgA 154 (254)
T cd05313 114 GKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGA 154 (254)
T ss_pred CcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCC
Confidence 333 3 489988765 5777788888888888899884443
No 289
>PLN03139 formate dehydrogenase; Provisional
Probab=91.12 E-value=0.43 Score=48.27 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=41.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s 114 (376)
.++|||+|. |.+|+.+++.|.. -..++.+. ++........ ......... +.+ .+.++|+|++++|....
T Consensus 199 gktVGIVG~-G~IG~~vA~~L~a---fG~~V~~~-d~~~~~~~~~-~~~g~~~~~-~l~ell~~sDvV~l~lPlt~~ 268 (386)
T PLN03139 199 GKTVGTVGA-GRIGRLLLQRLKP---FNCNLLYH-DRLKMDPELE-KETGAKFEE-DLDAMLPKCDVVVINTPLTEK 268 (386)
T ss_pred CCEEEEEee-cHHHHHHHHHHHH---CCCEEEEE-CCCCcchhhH-hhcCceecC-CHHHHHhhCCEEEEeCCCCHH
Confidence 479999998 9999999999976 35676543 3321111100 000111111 222 34789999999996543
No 290
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=91.11 E-value=0.4 Score=46.14 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=22.5
Q ss_pred EECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 44 VVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 44 IvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|.|++||+|+.|++.|.+++ +..++.++.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g-~~~~Vr~~d 30 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERG-YIYEVRVLD 30 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCC-CceEEEEcc
Confidence 78999999999999998873 235665443
No 291
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=91.08 E-value=1.8 Score=42.32 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=63.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-C--CCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-D--GVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~--~~DvVf~a~~~~~s~ 115 (376)
.-||.|-|-||.-|....+.+.+- .-++++-.+.+.-+..+. .++++. +..++ . ++|+++.++|.....
T Consensus 12 ~~~v~~~gi~~~~~~~~~~~~~~y---gt~~~~gV~p~~~~~~i~----G~~~y~-sv~dlp~~~~~DlAvI~vPa~~v~ 83 (300)
T PLN00125 12 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHL----GLPVFN-TVAEAKAETKANASVIYVPPPFAA 83 (300)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHh---CCcEEEEECCCCCCceEc----CeeccC-CHHHHhhccCCCEEEEecCHHHHH
Confidence 379999999999999998888765 346666555443222221 233332 11222 2 379999999999999
Q ss_pred hhHHHHHhCCCe-EEEcCCCCC
Q 017153 116 KFGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 116 ~~~~~~~~~G~~-VIDlS~~~R 136 (376)
+.+.++.++|++ +|-+|+-|.
T Consensus 84 ~al~e~~~~Gvk~~vIisaGf~ 105 (300)
T PLN00125 84 AAILEAMEAELDLVVCITEGIP 105 (300)
T ss_pred HHHHHHHHcCCCEEEEECCCCC
Confidence 999999999988 666888884
No 292
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=91.05 E-value=0.25 Score=51.45 Aligned_cols=154 Identities=12% Similarity=0.144 Sum_probs=82.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceeeec----C-cceEEeecCccC----CCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQ----D-KAYTVEELTEDS----FDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~~~----~-~~~~v~~~~~~~----~~~~DvVf~a 108 (376)
+.+||+||- |..|..+.+.|.+++| ++.+.. ++ .....+... + ..+... .++++ +.++|+||+|
T Consensus 6 ~~~IG~IGL-G~MG~~mA~nL~~~G~---~V~V~N-Rt~~k~~~l~~~~~~~Ga~~~~~a-~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 6 LSRIGLAGL-AVMGQNLALNIAEKGF---PISVYN-RTTSKVDETVERAKKEGNLPLYGF-KDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCCEEEEee-HHHHHHHHHHHHhCCC---eEEEEC-CCHHHHHHHHHhhhhcCCcccccC-CCHHHHHhcCCCCCEEEEE
Confidence 578999997 9999999999998744 665443 32 111111110 1 111111 12333 3459999999
Q ss_pred CCCchhhhhH-HH---HHhCCCeEEEcCCCCCCC----------CCCcEEeeccCH-HhhcCcccCCCCCcEEEcCCchH
Q 017153 109 AGGSISKKFG-PI---AVEKGSIVVDNSSAFRMV----------ENVPLVIPEVNP-EAMSGIKVGMGKGALIANPNCST 173 (376)
Q Consensus 109 ~~~~~s~~~~-~~---~~~~G~~VIDlS~~~R~~----------~~~~~~lpevN~-~~i~~~~~~~~~~~iVa~PgC~~ 173 (376)
++.+...+.+ .. .++.|-.|||.|...--+ .+..|+=.+|.. +... .....| .+|+..
T Consensus 80 v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA------~~G~~i-m~GG~~ 152 (493)
T PLN02350 80 VKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGA------RNGPSL-MPGGSF 152 (493)
T ss_pred CCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHh------cCCCeE-EecCCH
Confidence 9998764433 22 235789999999875210 012233333331 1111 123333 566666
Q ss_pred HHHHHHHhHHHHhCCCc--EEEEEEEccccccChH
Q 017153 174 IICLMAATPLHRRAKVT--RMVVSTYQAASGAGAA 206 (376)
Q Consensus 174 ta~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~ 206 (376)
.+. --++|+++..+-+ .--...+-|-.|+|..
T Consensus 153 ~a~-~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~ 186 (493)
T PLN02350 153 EAY-KNIEDILEKVAAQVDDGPCVTYIGPGGAGNF 186 (493)
T ss_pred HHH-HHHHHHHHHHhhhcCCCCcEEEeCCcCHHHH
Confidence 653 4467887765532 0011234566677654
No 293
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.98 E-value=0.45 Score=45.81 Aligned_cols=31 Identities=13% Similarity=0.345 Sum_probs=25.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+|.|.|++|.+|+++++.|.+++ .++.++.
T Consensus 41 k~vlItGasggIG~~la~~La~~G---~~Vi~~~ 71 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRG---ATVVAVA 71 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 689999999999999999998863 3665443
No 294
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.97 E-value=1.7 Score=42.21 Aligned_cols=89 Identities=15% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-C-------CCceeeecCcceE--EeecCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S-------AGKQLSFQDKAYT--VEELTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~-------~g~~~~~~~~~~~--v~~~~~~~~~~~DvVf~a 108 (376)
.|||+|+|+ |-+|.-+.-.|.+.++ ++..+.... . .|-.+...+.... +...+++....+|+||.|
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~---~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL---PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC---CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEE
Confidence 479999999 9999999988887533 455444321 1 1222211111111 111122234578999999
Q ss_pred CCCchhhhhHHHHHh---CCCeEEEc
Q 017153 109 AGGSISKKFGPIAVE---KGSIVVDN 131 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~---~G~~VIDl 131 (376)
+-+....+..+.+.. .+..||-+
T Consensus 78 vK~~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 CKAYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CCHHhHHHHHHHHHhhCCCCCEEEEE
Confidence 988766665555432 34445533
No 295
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=90.90 E-value=0.54 Score=46.38 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=24.8
Q ss_pred EEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~ 73 (376)
||+|+||+|.+|..++..|...+. ...+++.+-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD 37 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLD 37 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEe
Confidence 699999999999999998886522 122576653
No 296
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.82 E-value=0.29 Score=50.77 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=25.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||+|+|+ ||+|.-+.-.|+++++ ..++..+-
T Consensus 2 m~I~ViG~-GyvGl~~A~~lA~~g~-g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGA-GYVGGPTMAVIALKCP-DIEVVVVD 33 (473)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CCeEEEEE
Confidence 79999998 9999999999987632 45666653
No 297
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.82 E-value=1.1 Score=43.45 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=59.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|.|+|.+..+|+=|..+|.+.+ +.+..+....+.. .++ .+....+|+|+.|.+.-.- .
T Consensus 157 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t----------~~l------~~~~~~ADIVI~AvG~p~l--i 218 (286)
T PRK14184 157 GKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT----------PDL------AEECREADFLFVAIGRPRF--V 218 (286)
T ss_pred CCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc----------hhH------HHHHHhCCEEEEecCCCCc--C
Confidence 4799999999999999999998721 1134444333211 011 1234689999999865322 2
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
-+...+.|+.|||.+-++- ++. .+-.++.+.++.
T Consensus 219 ~~~~vk~GavVIDVGi~~~-~~~---l~GDVdf~~v~~ 252 (286)
T PRK14184 219 TADMVKPGAVVVDVGINRT-DDG---LVGDCDFEGLSD 252 (286)
T ss_pred CHHHcCCCCEEEEeeeecc-CCC---ccCCccHHHHHh
Confidence 2344578999999987652 211 345566666653
No 298
>PRK12829 short chain dehydrogenase; Provisional
Probab=90.80 E-value=0.31 Score=45.34 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=26.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|++|.+|+.+++.|.++++ ++..+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~---~V~~~~ 42 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGA---RVHVCD 42 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEe
Confidence 47999999999999999999988743 555444
No 299
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.76 E-value=0.64 Score=45.41 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=48.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|||+|. |.+|+++.++|..- .+++.+.. ++... .+ ......+.++ +..+|+|++++|.+..-+.
T Consensus 122 gktvgIiG~-G~IG~~vA~~l~af---G~~V~~~~-r~~~~----~~---~~~~~~~l~ell~~aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 122 NKSLGILGY-GGIGRRVALLAKAF---GMNIYAYT-RSYVN----DG---ISSIYMEPEDIMKKSDFVLISLPLTDETRG 189 (303)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHC---CCEEEEEC-CCCcc----cC---cccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence 489999998 99999999988653 45666553 32111 01 1000112233 4789999999997654221
Q ss_pred H---HHH--HhCCCeEEEcC
Q 017153 118 G---PIA--VEKGSIVVDNS 132 (376)
Q Consensus 118 ~---~~~--~~~G~~VIDlS 132 (376)
. ..+ .+.|+.+|+.|
T Consensus 190 li~~~~l~~mk~ga~lIN~s 209 (303)
T PRK06436 190 MINSKMLSLFRKGLAIINVA 209 (303)
T ss_pred CcCHHHHhcCCCCeEEEECC
Confidence 1 111 24577777654
No 300
>PRK06196 oxidoreductase; Provisional
Probab=90.71 E-value=1.1 Score=43.32 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=25.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.|+||.+|+++++.|.+++ .+++.+.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G---~~Vv~~~ 57 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAG---AHVIVPA 57 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999998863 3665543
No 301
>PLN00198 anthocyanidin reductase; Provisional
Probab=90.70 E-value=0.42 Score=46.65 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.|+||++|+.|++.|.++++ ++.++.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~---~V~~~~ 40 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY---AVNTTV 40 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC---EEEEEE
Confidence 47899999999999999999988643 565443
No 302
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.69 E-value=0.7 Score=46.93 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=52.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~ 116 (376)
..||.|+|. |.+|..+++.|.+.+ .++... +++... ...... .. .... ..+. +.++|++|.+.|-....+
T Consensus 3 ~~~i~iiGl-G~~G~slA~~l~~~G---~~V~g~-D~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~dlvV~s~gi~~~~~ 74 (418)
T PRK00683 3 LQRVVVLGL-GVTGKSIARFLAQKG---VYVIGV-DKSLEALQSCPYI-HE-RYLE-NAEEFPEQVDLVVRSPGIKKEHP 74 (418)
T ss_pred CCeEEEEEE-CHHHHHHHHHHHHCC---CEEEEE-eCCccccchhHHH-hh-hhcC-CcHHHhcCCCEEEECCCCCCCcH
Confidence 468999999 999999999998873 244433 222111 000000 00 0111 1222 367899999987776778
Q ss_pred hHHHHHhCCCeEEE
Q 017153 117 FGPIAVEKGSIVVD 130 (376)
Q Consensus 117 ~~~~~~~~G~~VID 130 (376)
+..++.++|++++.
T Consensus 75 ~l~~A~~~g~~vv~ 88 (418)
T PRK00683 75 WVQAAIASHIPVVT 88 (418)
T ss_pred HHHHHHHCCCcEEE
Confidence 88888999998874
No 303
>PRK08328 hypothetical protein; Provisional
Probab=90.69 E-value=0.69 Score=43.31 Aligned_cols=92 Identities=23% Similarity=0.295 Sum_probs=55.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec---------------CCCCCcee---------eecCcceEEee-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---------------KRSAGKQL---------SFQDKAYTVEE- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s---------------~~~~g~~~---------~~~~~~~~v~~- 93 (376)
..||.|+|+ |-+|.+++..|...+. -++..+-. .+..|+.. .....++.+..
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gv--g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGV--GRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 468999999 8999999999988643 34443321 11223210 00012233321
Q ss_pred ---cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 94 ---LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 94 ---~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
++++ .+.++|+||+|+....++.+...+ .+.|+++|..+.
T Consensus 104 ~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~ 151 (231)
T PRK08328 104 VGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAV 151 (231)
T ss_pred eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 2221 146899999999987776665543 577888886443
No 304
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=90.58 E-value=1.1 Score=41.79 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec-------------CcceE----EeecCccC-C
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-------------DKAYT----VEELTEDS-F 99 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~-------------~~~~~----v~~~~~~~-~ 99 (376)
+.+||+|.|. |.||+.+++.|.+. ..+++.+++. .|..+... ...+. ....+++. |
T Consensus 30 ~~~~v~I~G~-G~VG~~~a~~L~~~---g~~vv~v~D~--~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~ 103 (227)
T cd01076 30 AGARVAIQGF-GNVGSHAARFLHEA---GAKVVAVSDS--DGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELL 103 (227)
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEECC--CCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccce
Confidence 3589999998 99999999999874 6788877653 22211110 00010 01122333 2
Q ss_pred -CCCcEEEEcCCC-chhhhhHHHHHhCCCeEEEcCC
Q 017153 100 -DGVDIALFSAGG-SISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 100 -~~~DvVf~a~~~-~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
.++||++.|+.. ....+.++++ .|++|-=++
T Consensus 104 ~~~~Dvlip~a~~~~i~~~~~~~l---~a~~I~egA 136 (227)
T cd01076 104 ELDCDILIPAALENQITADNADRI---KAKIIVEAA 136 (227)
T ss_pred eecccEEEecCccCccCHHHHhhc---eeeEEEeCC
Confidence 489999998755 4455555554 377774443
No 305
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.56 E-value=0.32 Score=50.42 Aligned_cols=153 Identities=12% Similarity=0.171 Sum_probs=80.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec----CcceEEeecCccC----CCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ----DKAYTVEELTEDS----FDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~----~~~~~v~~~~~~~----~~~~DvVf~a~~~ 111 (376)
.+|||+|. |..|..+.+.|.+++| ++.+.......-+.+... +..+... .++++ +.++|+||+|++.
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~i~~~-~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGF---KISVYNRTYEKTEEFVKKAKEGNTRVKGY-HTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHhhhhcCCcceec-CCHHHHHhcCCCCCEEEEEeCC
Confidence 58999998 9999999999998754 555443221111111110 1111111 12222 2368988888666
Q ss_pred ch-hhhhHHHH---HhCCCeEEEcCCCCCCC----------CCCcEEeeccCH--HhhcCcccCCCCCcEEEcCCchHHH
Q 017153 112 SI-SKKFGPIA---VEKGSIVVDNSSAFRMV----------ENVPLVIPEVNP--EAMSGIKVGMGKGALIANPNCSTII 175 (376)
Q Consensus 112 ~~-s~~~~~~~---~~~G~~VIDlS~~~R~~----------~~~~~~lpevN~--~~i~~~~~~~~~~~iVa~PgC~~ta 175 (376)
+. ..+....+ ++.|..|||.+..+--+ .++.|+=.+|.. +... ... .-.+|+...+
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~-------~G~-~lm~GG~~~a 148 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGAR-------YGP-SLMPGGNKEA 148 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHh-------cCC-EEEEeCCHHH
Confidence 54 44444443 35789999999875211 012233222321 1111 222 2345666665
Q ss_pred HHHHHhHHHHhCCCcE--EEEEEEccccccChH
Q 017153 176 CLMAATPLHRRAKVTR--MVVSTYQAASGAGAA 206 (376)
Q Consensus 176 ~~l~L~pL~~~~~i~~--v~v~t~~gvSGaGr~ 206 (376)
. --+.|+++..+-+. --...+-|-.|+|..
T Consensus 149 ~-~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~ 180 (470)
T PTZ00142 149 Y-DHVKDILEKCSAKVGDSPCVTYVGPGSSGHY 180 (470)
T ss_pred H-HHHHHHHHHHhhhcCCCCeEEEECCCCHHHH
Confidence 4 44678877655320 002456666777754
No 306
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.55 E-value=0.85 Score=41.63 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----C-----------CCCceeee--------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----R-----------SAGKQLSF--------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~-----------~~g~~~~~--------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.++++.|...+ .-++..+-.+ + ..|++-.. ...++.++.
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~G--Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSG--IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcC--CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 478999999 559999999998863 3344444211 1 11221110 011222321
Q ss_pred --cC---ccCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 94 --LT---EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 94 --~~---~~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
++ ++.+.++|+|++|++...+.....++ .+.|+++|..+.
T Consensus 98 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~ 143 (197)
T cd01492 98 DDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGV 143 (197)
T ss_pred cCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 11 12257899999998876665555544 567888776543
No 307
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.44 E-value=1.5 Score=40.47 Aligned_cols=93 Identities=19% Similarity=0.329 Sum_probs=54.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCCCCceeee------------------cCcceEEe----
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSAGKQLSF------------------QDKAYTVE---- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~~g~~~~~------------------~~~~~~v~---- 92 (376)
..||+|+|+ |-+|.+++..|...+. -++..+-. .+..++...+ ....+.+.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gv--g~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGV--GNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 478999999 9999999999988743 34443321 1122211110 01122222
Q ss_pred ecCc----cCCCCCcEEEEcCCCchhhhh-HHHHHhC-CCeEEEcCCC
Q 017153 93 ELTE----DSFDGVDIALFSAGGSISKKF-GPIAVEK-GSIVVDNSSA 134 (376)
Q Consensus 93 ~~~~----~~~~~~DvVf~a~~~~~s~~~-~~~~~~~-G~~VIDlS~~ 134 (376)
.++. +.+.++|+||+|++...++.. ...+.+. +.++|..++.
T Consensus 105 ~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~ 152 (212)
T PRK08644 105 KIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGM 152 (212)
T ss_pred ecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehh
Confidence 1222 224689999999988777543 3455566 8888866543
No 308
>PLN02240 UDP-glucose 4-epimerase
Probab=90.44 E-value=0.43 Score=46.59 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=26.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.++|.|.|+||++|..|++.|.+++ .+++++.
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~ 36 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAG---YKVVVID 36 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 34799999999999999999998763 3666553
No 309
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=90.42 E-value=3.3 Score=43.42 Aligned_cols=94 Identities=14% Similarity=0.215 Sum_probs=55.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc-----------eeeecC----------cceEEeecCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK-----------QLSFQD----------KAYTVEELTE 96 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~-----------~~~~~~----------~~~~v~~~~~ 96 (376)
..||+|||+ |..|..+...++.++| ++.+.... ....+ .+..+. ..+... .+.
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la~aG~---~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 79 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAASAGH---QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL 79 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCC---eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH
Confidence 368999999 9999999999988644 55544311 11100 000000 012222 234
Q ss_pred cCCCCCcEEEEcCCCchhhhhH--H---HHHhCCCeEEEcCCCCCC
Q 017153 97 DSFDGVDIALFSAGGSISKKFG--P---IAVEKGSIVVDNSSAFRM 137 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~~~~--~---~~~~~G~~VIDlS~~~R~ 137 (376)
+++.++|+||.|.+.....+.. . .+...++.+..+++.+..
T Consensus 80 ~~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i 125 (503)
T TIGR02279 80 HALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI 125 (503)
T ss_pred HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH
Confidence 4567999999999986553322 2 233456666668888754
No 310
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.37 E-value=0.46 Score=47.68 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=51.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceee-ecCcceEEeecCc----cCCCCCcEEEEcCCC-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS-FQDKAYTVEELTE----DSFDGVDIALFSAGG- 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~-~~~~~~~v~~~~~----~~~~~~DvVf~a~~~- 111 (376)
..+|.|+|+ |.+|+..++.+...+ .++.++. ++.. .+.+. ..+..+.....+. +.+.++|+||.|++.
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lG---a~V~v~d-~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLG---ATVTILD-INIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP 241 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCC---CeEEEEE-CCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC
Confidence 367999999 999999999998763 3555443 3211 00110 0111111111111 224689999999732
Q ss_pred ------chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 ------SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ------~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
-...+.... .+.|..|||++.+-
T Consensus 242 g~~~p~lit~~~l~~-mk~g~vIvDva~d~ 270 (370)
T TIGR00518 242 GAKAPKLVSNSLVAQ-MKPGAVIVDVAIDQ 270 (370)
T ss_pred CCCCCcCcCHHHHhc-CCCCCEEEEEecCC
Confidence 123444433 35789999999763
No 311
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=90.33 E-value=0.42 Score=47.11 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=55.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecC---cceEEeecC-c-cCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQD---KAYTVEELT-E-DSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~---~~~~v~~~~-~-~~~~~~DvVf~a~~~~ 112 (376)
..+++|+|+ |..|+..++.|... ..++-+.+.+++.. .+.+.... ..+.+...+ . +.+.++|+|+.||+..
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~--~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLV--RDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHh--CCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 468999998 99999999988643 23444445554321 11111100 012232222 2 2357899999999885
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
. .-+-...++.|..|.+..++.
T Consensus 206 ~-p~i~~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 206 T-PILHAEWLEPGQHVTAMGSDA 227 (326)
T ss_pred C-cEecHHHcCCCcEEEeeCCCC
Confidence 3 122234567899888877764
No 312
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.32 E-value=0.98 Score=44.20 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=50.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCceeeecCc--ce-EEeecCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQLSFQDK--AY-TVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~~~~~~~~--~~-~v~~~~~~~~~~~DvVf~a~~ 110 (376)
|||+|+|+ |-+|.-+.-.|.+. + -.+..+..++. .|-.+..... .. .....+.+.+..+|+||.++-
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~--g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKA--G-HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhC--C-CeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 68999999 99999999999887 3 24444432221 2333322111 11 112223445678999999999
Q ss_pred CchhhhhHHHHHh
Q 017153 111 GSISKKFGPIAVE 123 (376)
Q Consensus 111 ~~~s~~~~~~~~~ 123 (376)
+....+.++.+..
T Consensus 77 a~q~~~al~~l~~ 89 (307)
T COG1893 77 AYQLEEALPSLAP 89 (307)
T ss_pred cccHHHHHHHhhh
Confidence 9888777776653
No 313
>PRK09414 glutamate dehydrogenase; Provisional
Probab=90.28 E-value=1.6 Score=45.00 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC--------------cceE-------EeecCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD--------------KAYT-------VEELTE 96 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~--------------~~~~-------v~~~~~ 96 (376)
+..||+|.|+ |.||+.+++.|.+. ..+++++++. .|--+...+ ..+. ....+.
T Consensus 231 ~g~rVaIqGf-GnVG~~~A~~L~~~---GakVVavsDs--~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~ 304 (445)
T PRK09414 231 EGKRVVVSGS-GNVAIYAIEKAQQL---GAKVVTCSDS--SGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEG 304 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEEcC--CceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCC
Confidence 3589999999 99999999999874 5788887642 221111100 0010 011122
Q ss_pred cC-C-CCCcEEEEcC-CCchhhhhHHHHHhCCCeEEEcCC
Q 017153 97 DS-F-DGVDIALFSA-GGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 97 ~~-~-~~~DvVf~a~-~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
+. | .+|||.+-|. +.....+.+.++.+.+|++|-=.+
T Consensus 305 ~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgA 344 (445)
T PRK09414 305 GSPWSVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGA 344 (445)
T ss_pred ccccccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCC
Confidence 33 3 4899999876 556678888888888899884443
No 314
>PRK08264 short chain dehydrogenase; Validated
Probab=90.26 E-value=0.81 Score=41.88 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD 63 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~ 63 (376)
..+|.|.|+||.+|+.+++.|.+++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G 30 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARG 30 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC
Confidence 4689999999999999999998873
No 315
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.21 E-value=1.8 Score=42.27 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=61.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
...+|.|+|.+..+|+=|..+|.+++.. +..+....|+. +++ .+....+|+|+.|.|.-.-
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T----------~~l------~~~~~~ADIvVsAvGkp~~-- 221 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS----------KNL------ARHCQRADILIVAAGVPNL-- 221 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC----------cCH------HHHHhhCCEEEEecCCcCc--
Confidence 3489999999999999999999864100 34444332211 011 1224689999999865322
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCC---CCcEEeeccCHHhhcC
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVE---NVPLVIPEVNPEAMSG 155 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~---~~~~~lpevN~~~i~~ 155 (376)
+-+...+.|+.|||.+-.+-.++ +-...+-.++.+.+..
T Consensus 222 i~~~~ik~gavVIDvGin~~~~~~~~g~~~~~GDVdfe~v~~ 263 (297)
T PRK14168 222 VKPEWIKPGATVIDVGVNRVGTNESTGKAILSGDVDFDAVKE 263 (297)
T ss_pred cCHHHcCCCCEEEecCCCccCccccCCCcceeccccHHHHHh
Confidence 33445678999999876542111 1112566777776663
No 316
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.19 E-value=0.8 Score=42.55 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=28.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~ 75 (376)
+.+||+|.|. |.+|+.+++.|.+. ...++++++.
T Consensus 22 ~g~~vaIqGf-GnVG~~~a~~L~~~---G~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGL-GNVGWGLAKKLAEE---GGKVLAVSDP 55 (217)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCEEEEEEcC
Confidence 3589999999 99999999999985 4577777643
No 317
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.18 E-value=1.7 Score=41.99 Aligned_cols=91 Identities=21% Similarity=0.312 Sum_probs=58.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+...-|+. +++ .+....+|+|+.|.|.-.- +-
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~---~AtVt~chs~T----------~~l------~~~~~~ADIvIsAvGkp~~--i~ 216 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNE---NATVTICHSKT----------KNL------KEVCKKADILVVAIGRPKF--ID 216 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEcCCCcCc--cC
Confidence 489999999999999999999875 34554332211 011 1123678999999876432 23
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||..-.+ .+ + -.+-.++.+...
T Consensus 217 ~~~ik~gavVIDvGin~-~~-g--kl~GDvd~~~v~ 248 (278)
T PRK14172 217 EEYVKEGAIVIDVGTSS-VN-G--KITGDVNFDKVI 248 (278)
T ss_pred HHHcCCCcEEEEeeccc-cC-C--ceeeeccHHHHH
Confidence 34567899999986554 22 1 245556766665
No 318
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=90.17 E-value=2 Score=33.46 Aligned_cols=63 Identities=22% Similarity=0.456 Sum_probs=40.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF- 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~- 117 (376)
..+++|+|+ |.+|+-+++.|.+.+ ..++ .+.++ |++|.|++...--..
T Consensus 23 ~~~v~i~G~-G~~g~~~a~~l~~~~--~~~v-~v~~r---------------------------di~i~~~~~~~~~~~~ 71 (86)
T cd05191 23 GKTVVVLGA-GEVGKGIAKLLADEG--GKKV-VLCDR---------------------------DILVTATPAGVPVLEE 71 (86)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC--CCEE-EEEcC---------------------------CEEEEcCCCCCCchHH
Confidence 478999999 999999999998752 1222 22221 999999866433221
Q ss_pred HHHHHhCCCeEEEcC
Q 017153 118 GPIAVEKGSIVVDNS 132 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS 132 (376)
.-.....+..|||++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 112234577788864
No 319
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=90.03 E-value=0.88 Score=44.23 Aligned_cols=104 Identities=16% Similarity=0.317 Sum_probs=59.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEee----
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVEE---- 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~~---- 93 (376)
||.|+|+ |-+|.++++.|...+.. ++..+- ..+..++.+-+ ...++.+..
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gvg--~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~ 77 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGFR--NIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGK 77 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCC--eEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 6899999 89999999999887444 333331 11222221111 011222221
Q ss_pred cC---ccCCCCCcEEEEcCCCchhhhhHHHH-HhC--------CCeEEEcCCCCCCCCCCcEEeecc
Q 017153 94 LT---EDSFDGVDIALFSAGGSISKKFGPIA-VEK--------GSIVVDNSSAFRMVENVPLVIPEV 148 (376)
Q Consensus 94 ~~---~~~~~~~DvVf~a~~~~~s~~~~~~~-~~~--------G~~VIDlS~~~R~~~~~~~~lpev 148 (376)
+. .+-+.+.|+|+.|++...++.+.... ... ++..||.+.. -+...+...+|+.
T Consensus 78 i~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~-G~~G~v~vi~P~~ 143 (291)
T cd01488 78 IQDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTE-GFKGHARVILPGI 143 (291)
T ss_pred cCchhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEc-ccEEEEEEEcCCC
Confidence 11 12247899999999998888777654 332 4677776542 2222334556665
No 320
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=89.95 E-value=1.3 Score=45.36 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=62.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCC---CCeEEEEEec----CCCCCceeee-------------------cCcceEEee-
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDF---PYRSIKMLAS----KRSAGKQLSF-------------------QDKAYTVEE- 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~---p~~~l~~v~s----~~~~g~~~~~-------------------~~~~~~v~~- 93 (376)
||.|+|+ |-+|.|+++.|...+. +.-++..+-. .+..++.+-+ ...++.+..
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 6899999 9999999999987533 1135554421 1222222111 011222321
Q ss_pred ---cCc--------cCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCCCCCcEEeecc
Q 017153 94 ---LTE--------DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVENVPLVIPEV 148 (376)
Q Consensus 94 ---~~~--------~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~~~~~~~lpev 148 (376)
+++ +-|.+.|+|+.|+..-.++.+..+. ...++..|+.. ...+...+...+|++
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~g-t~G~~G~v~v~iP~~ 145 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESG-TLGTKGNTQVVIPHL 145 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe-cccceeEEEEEeCCC
Confidence 111 1246899999999998887777644 56788888743 444444445566654
No 321
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.93 E-value=1.8 Score=44.54 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=58.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC-----------------cc---e----EEee
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-----------------KA---Y----TVEE 93 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~-----------------~~---~----~v~~ 93 (376)
+..||+|.|+ |.||...++.|.+. ..+++++++. .|.-+...+ .. . ....
T Consensus 227 ~g~rVaVQGf-GNVG~~aA~~L~e~---GAkVVaVSD~--~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~ 300 (444)
T PRK14031 227 KGKVCLVSGS-GNVAQYTAEKVLEL---GGKVVTMSDS--DGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY 300 (444)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEECC--CCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE
Confidence 3589999999 99999999999874 6788877652 221110000 00 0 0111
Q ss_pred cCccC-C-CCCcEEEEc-CCCchhhhhHHHHHhCCCeEEEcCC
Q 017153 94 LTEDS-F-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 94 ~~~~~-~-~~~DvVf~a-~~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
.+.++ | .+|||.|=| +......+.++++...||++|-=++
T Consensus 301 i~~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgA 343 (444)
T PRK14031 301 VEGARPWGEKGDIALPSATQNELNGDDARQLVANGVIAVSEGA 343 (444)
T ss_pred cCCcccccCCCcEEeecccccccCHHHHHHHHhcCCeEEECCC
Confidence 12333 3 589988865 5777889999999888998884433
No 322
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.92 E-value=2.1 Score=41.67 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+...-|.. +++ .+....+|+|+.|.|.--- +-
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~---~aTVt~chs~T----------~~l------~~~~~~ADIvVsAvGkp~~--i~ 218 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGE---NCTVTTVHSAT----------RDL------ADYCSKADILVAAVGIPNF--VK 218 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEccCCcCc--cC
Confidence 479999999999999999998875 34554333211 011 1224689999999876422 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCC-cEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENV-PLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~-~~~lpevN~~~i~ 154 (376)
....+.|+.|||..-.+ .+++- .-.+-.++.+.+.
T Consensus 219 ~~~ik~gaiVIDVGin~-~~~~~~~kl~GDvd~e~v~ 254 (294)
T PRK14187 219 YSWIKKGAIVIDVGINS-IEEGGVKKFVGDVDFAEVK 254 (294)
T ss_pred HHHcCCCCEEEEecccc-cCCCCccceeCCccHHHHh
Confidence 34467899999987554 22210 0245566766665
No 323
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.89 E-value=0.6 Score=42.74 Aligned_cols=31 Identities=16% Similarity=0.412 Sum_probs=25.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
+.++.|.|+||.+|.++++.|.+++ .+++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEG---AKVVIA 35 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 4689999999999999999998763 466554
No 324
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=89.83 E-value=1.5 Score=40.08 Aligned_cols=92 Identities=12% Similarity=0.156 Sum_probs=52.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCC-------------Cceeee--------cCcceEEee
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSA-------------GKQLSF--------QDKAYTVEE 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~-------------g~~~~~--------~~~~~~v~~ 93 (376)
..||.|+|+ |-+|.++++.|...+. -++..+-.+ +.. |++-.. ...++.++.
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GV--g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGI--DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCC--CEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 479999999 5599999999987633 344444211 111 211110 012233322
Q ss_pred cC----------ccCCCCCcEEEEcCCCchhhhhHHH-HHhCCCeEEEcCC
Q 017153 94 LT----------EDSFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNSS 133 (376)
Q Consensus 94 ~~----------~~~~~~~DvVf~a~~~~~s~~~~~~-~~~~G~~VIDlS~ 133 (376)
.+ ++.|.++|+|++|.....+..+..+ ..+.++++|..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~ 146 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCAT 146 (198)
T ss_pred EecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 11 1124789999999887655555444 4567888886543
No 325
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.81 E-value=3.2 Score=40.17 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=59.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....+.. +++ .+....+|+|+.|.|...- +-
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~---~ATVt~chs~T----------~dl------~~~~k~ADIvIsAvGkp~~--i~ 216 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNA---KATVTTCHRFT----------TDL------KSHTTKADILIVAVGKPNF--IT 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEEcCCC----------CCH------HHHhhhcCEEEEccCCcCc--CC
Confidence 479999999999999999988875 34554332211 011 1224689999999977432 23
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ .++ -.+-.++.+.++
T Consensus 217 ~~~vk~gavVIDvGin~-~~g---kl~GDvd~~~v~ 248 (282)
T PRK14180 217 ADMVKEGAVVIDVGINH-VDG---KIVGDVDFAAVK 248 (282)
T ss_pred HHHcCCCcEEEEecccc-cCC---ceeCCcCHHHHH
Confidence 35567899999988765 221 245566766665
No 326
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.80 E-value=0.63 Score=42.70 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=25.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..++.|.|++|.+|..+++.|.+++ .+++.+.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G---~~Vi~~~ 38 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG---VNVGLLA 38 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999998863 3666544
No 327
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=89.77 E-value=0.5 Score=47.50 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=31.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSA 78 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~ 78 (376)
+||+|+|+||-+|.+.++.+..+ |+ +++++++..+..
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~--~~~f~v~~Laa~~n~ 39 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHN--PDHFQVVALSAGKNV 39 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhC--ccccEEEEEEcCCCH
Confidence 58999999999999999999876 54 999988765443
No 328
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=89.74 E-value=0.5 Score=43.38 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|++|.+|+.+++.|.+++ .++..+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~ 37 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG---AEVIVVD 37 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999998873 3665554
No 329
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.73 E-value=0.8 Score=44.93 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=39.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+++.+++..- ..++.+. ++.. .... ......+ .+.+..+|+|++++|-+.
T Consensus 147 gktvgIiG~-G~IG~~va~~l~~f---g~~V~~~-~~~~-~~~~-----~~~~~~l-~ell~~sDiv~l~~Plt~ 209 (314)
T PRK06932 147 GSTLGVFGK-GCLGTEVGRLAQAL---GMKVLYA-EHKG-ASVC-----REGYTPF-EEVLKQADIVTLHCPLTE 209 (314)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcC---CCEEEEE-CCCc-cccc-----ccccCCH-HHHHHhCCEEEEcCCCCh
Confidence 479999998 99999999998653 4566544 3221 1110 0011111 123578999999999654
No 330
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=89.45 E-value=0.71 Score=42.07 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
.++|.|.|++|++|+.+++.|.++++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~ 30 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA 30 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 47899999999999999999988743
No 331
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.44 E-value=0.79 Score=44.78 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=41.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceee--ec----CcceEEe-ecCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLS--FQ----DKAYTVE-ELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~--~~----~~~~~v~-~~~~~~~~~~DvVf~a~~ 110 (376)
+||+|+|+ |++|..+...|+.+++ .+++++-.... .|+.+. .. .....+. ..+.+++.++|+||.|.|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~--~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKEL--ADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCC
Confidence 68999998 9999999999888633 25555432211 122111 00 0011222 123344789999999988
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 79 ~ 79 (305)
T TIGR01763 79 L 79 (305)
T ss_pred C
Confidence 4
No 332
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.42 E-value=0.56 Score=49.34 Aligned_cols=86 Identities=9% Similarity=0.136 Sum_probs=51.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~~ 116 (376)
..+|+|+|. |.+|+.+.+.|... ..++.+........+.... ..... +.+ .+..+|+|++|+|.+.. ..
T Consensus 140 gktvgIiG~-G~IG~~vA~~l~~f---G~~V~~~d~~~~~~~~~~~---g~~~~--~l~ell~~aDiV~l~lP~t~~t~~ 210 (526)
T PRK13581 140 GKTLGIIGL-GRIGSEVAKRAKAF---GMKVIAYDPYISPERAAQL---GVELV--SLDELLARADFITLHTPLTPETRG 210 (526)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEECCCCChhHHHhc---CCEEE--cHHHHHhhCCEEEEccCCChHhhc
Confidence 478999998 99999999999764 4566654321111110001 11121 223 35789999999998643 22
Q ss_pred hH--HH--HHhCCCeEEEcCC
Q 017153 117 FG--PI--AVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~~--~~~~G~~VIDlS~ 133 (376)
.. .. ..+.|+.+|+.+-
T Consensus 211 li~~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 211 LIGAEELAKMKPGVRIINCAR 231 (526)
T ss_pred CcCHHHHhcCCCCeEEEECCC
Confidence 22 11 1356888887764
No 333
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.42 E-value=1.3 Score=45.68 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=58.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceee-ecCcceEEe--ecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS-FQDKAYTVE--ELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~-~~~~~~~v~--~~~~~~~~~~DvVf~a~~~~~s 114 (376)
.+||+|+|- |..|+.+++.|.+++ .++.+.-.+... +.... .....+.+. ..+.++|..+|+|+..-|-...
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G---~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~ 82 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLG---AEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPT 82 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHCC---CeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCC
Confidence 489999998 999999999999863 455544322222 11000 001223332 2223456789999999887777
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
..++.++.++|++|+
T Consensus 83 ~p~v~~A~~~gi~i~ 97 (448)
T COG0771 83 HPLVEAAKAAGIEII 97 (448)
T ss_pred CHHHHHHHHcCCcEE
Confidence 788889999999988
No 334
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.21 E-value=1.3 Score=45.18 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=54.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce---eee-cCcceEEeecC-c-cCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ---LSF-QDKAYTVEELT-E-DSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~---~~~-~~~~~~v~~~~-~-~~~~~~DvVf~a~~~~ 112 (376)
.++|.|+|+ |.+|..+.+.|++++ .++.+.. ++..... ... ....+.+...+ . +...++|+||.+++..
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G---~~V~~~d-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLG---AKVILTD-EKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEe-CCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCC
Confidence 489999999 559999999999874 3555443 2211100 000 00112222111 1 2235799999998877
Q ss_pred hhhhhHHHHHhCCCeEEEcC
Q 017153 113 ISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS 132 (376)
...+....+.+.|+.|+.-.
T Consensus 80 ~~~~~~~~a~~~~i~~~~~~ 99 (450)
T PRK14106 80 LDSPPVVQAHKKGIEVIGEV 99 (450)
T ss_pred CCCHHHHHHHHCCCcEEeHH
Confidence 66677777788899887543
No 335
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=89.20 E-value=0.66 Score=48.82 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=51.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~~ 116 (376)
..+|||+|. |.+|+++.+.|... ..++.+.. +.......... .....+ +.+ .+.++|+|++|+|.... ..
T Consensus 138 gktvgIiG~-G~IG~~vA~~l~~f---G~~V~~~d-~~~~~~~~~~~--g~~~~~-~l~ell~~aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 138 GKTLGVIGL-GRIGSIVAKRAKAF---GMKVLAYD-PYISPERAEQL--GVELVD-DLDELLARADFITVHTPLTPETRG 209 (525)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEEC-CCCChhHHHhc--CCEEcC-CHHHHHhhCCEEEEccCCChhhcc
Confidence 378999998 99999999999764 35665543 22111110000 111111 222 35789999999997632 22
Q ss_pred hH--HHH--HhCCCeEEEcCC
Q 017153 117 FG--PIA--VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~~~--~~~G~~VIDlS~ 133 (376)
+. +.+ .+.|+.+|+.+-
T Consensus 210 li~~~~l~~mk~ga~lIN~aR 230 (525)
T TIGR01327 210 LIGAEELAKMKKGVIIVNCAR 230 (525)
T ss_pred CcCHHHHhcCCCCeEEEEcCC
Confidence 22 222 356888887764
No 336
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.12 E-value=1.2 Score=44.29 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=55.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCCCcee-------------e--------ecCcceEEee
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSAGKQL-------------S--------FQDKAYTVEE 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~g~~~-------------~--------~~~~~~~v~~ 93 (376)
..||.|+|+ |-+|..+++.|...++. ++..+-.+ +..++.. . ....++.++.
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg--~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIG--KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC--EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 478999999 88999999999886432 44433211 1111110 0 0012233322
Q ss_pred ----cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 94 ----LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 94 ----~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
.+++ .+.++|+||.|++...+..+...+ .+.|+++|..+
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 101 VVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred EeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2211 246899999999998887766654 46788888654
No 337
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=89.12 E-value=0.73 Score=47.80 Aligned_cols=152 Identities=15% Similarity=0.231 Sum_probs=79.2
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec---CcceEEeecCccC----CCCCcEEEEcCCCch
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ---DKAYTVEELTEDS----FDGVDIALFSAGGSI 113 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~---~~~~~v~~~~~~~----~~~~DvVf~a~~~~~ 113 (376)
+|||+|. |..|..+.+.|.+++| ++.+.......-+.+... +..+.... ++++ +.++|+||+|++.+.
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~---~V~v~drt~~~~~~l~~~~~~g~~~~~~~-s~~e~v~~l~~~dvIil~v~~~~ 75 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF---TVSVYNRTPEKTDEFLAEHAKGKKIVGAY-SIEEFVQSLERPRKIMLMVKAGA 75 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC---eEEEEeCCHHHHHHHHhhccCCCCceecC-CHHHHHhhcCCCCEEEEECCCcH
Confidence 4899997 9999999999998754 555443211111111111 11111111 2222 346899999998853
Q ss_pred -hhhhHHHH---HhCCCeEEEcCCCCCCC----------CCCcEEeeccCH--HhhcCcccCCCCCcEEEcCCchHHHHH
Q 017153 114 -SKKFGPIA---VEKGSIVVDNSSAFRMV----------ENVPLVIPEVNP--EAMSGIKVGMGKGALIANPNCSTIICL 177 (376)
Q Consensus 114 -s~~~~~~~---~~~G~~VIDlS~~~R~~----------~~~~~~lpevN~--~~i~~~~~~~~~~~iVa~PgC~~ta~~ 177 (376)
..+....+ ++.|-.|||.|..+--+ .+..|+=-+|.. +... .... -.+|+...+.
T Consensus 76 ~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~-------~G~~-im~GG~~~a~- 146 (467)
T TIGR00873 76 PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGAR-------KGPS-IMPGGSAEAW- 146 (467)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHh-------cCCc-CCCCCCHHHH-
Confidence 44444444 35688999999754110 012232222221 1111 1222 2466666554
Q ss_pred HHHhHHHHhCCCcE--EEEEEEccccccChH
Q 017153 178 MAATPLHRRAKVTR--MVVSTYQAASGAGAA 206 (376)
Q Consensus 178 l~L~pL~~~~~i~~--v~v~t~~gvSGaGr~ 206 (376)
-.+.|+++..+-+- .-...+-|-.|+|..
T Consensus 147 ~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~ 177 (467)
T TIGR00873 147 PLVAPIFQKIAAKVDGEPCCTWIGPDGAGHY 177 (467)
T ss_pred HHHHHHHHHHhhhcCCCCceEEECCcCHHHH
Confidence 44778877654321 112356676777754
No 338
>PRK07877 hypothetical protein; Provisional
Probab=89.07 E-value=1.4 Score=48.03 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=57.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCcee----------ee--------cCcceEEee---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQL----------SF--------QDKAYTVEE--- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~----------~~--------~~~~~~v~~--- 93 (376)
..||+|+|+ | +|..++..|...+- .-++..+- ..++..+.+ .. ....+.++.
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGv-vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGL-CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccC-CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 579999999 9 89999999987631 12444331 112222210 00 012233332
Q ss_pred -cCccC----CCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCC
Q 017153 94 -LTEDS----FDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSA 134 (376)
Q Consensus 94 -~~~~~----~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~ 134 (376)
++++. +.++|+||+|++...++-....+ .+.|+.+|..+++
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 22222 36899999999998887777644 5789999987764
No 339
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.97 E-value=0.81 Score=44.23 Aligned_cols=70 Identities=11% Similarity=0.120 Sum_probs=40.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee----cCcceEEeecC--ccCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF----QDKAYTVEELT--EDSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~----~~~~~~v~~~~--~~~~~~~DvVf~a~~~~ 112 (376)
.+|.|+|+ |-+|+.++..|... ..-++..+ +++. ..+.+.. ......+...+ .+.+.++|+|+.|+|.+
T Consensus 128 k~vlIlGa-GGaaraia~aL~~~--G~~~I~I~-nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 128 ERVVQLGA-GGAGAAVAHALLTL--GVERLTIF-DVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CEEEEECC-cHHHHHHHHHHHHc--CCCEEEEE-CCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 68999999 88999999999876 33345433 3321 1111111 01112222222 12346799999999876
Q ss_pred h
Q 017153 113 I 113 (376)
Q Consensus 113 ~ 113 (376)
.
T Consensus 204 m 204 (284)
T PRK12549 204 M 204 (284)
T ss_pred C
Confidence 4
No 340
>PRK06182 short chain dehydrogenase; Validated
Probab=88.96 E-value=1.9 Score=40.58 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=25.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..++.|.|+||.+|+++.+.|.+++ .++.++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G---~~V~~~~ 34 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQG---YTVYGAA 34 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999998763 3665544
No 341
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.95 E-value=1.2 Score=45.86 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=54.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCcceEEe-ecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDKAYTVE-ELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~~~~v~-~~~~~~~~~~DvVf~a~~~~~s 114 (376)
..+|.|+|+ |.+|.++++.|.+++ .++..+..+... ...+.. ....+.+. ........++|+|+.+.+..-.
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G---~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELG---ARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPD 91 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCC
Confidence 368999999 999999999998863 466554322211 111100 01123332 1112223578999999887766
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+....+.+.|+.|+
T Consensus 92 ~~~~~~a~~~gi~v~ 106 (480)
T PRK01438 92 APLLAAAADAGIPVW 106 (480)
T ss_pred CHHHHHHHHCCCeec
Confidence 667777788898886
No 342
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.92 E-value=2.4 Score=41.00 Aligned_cols=92 Identities=20% Similarity=0.288 Sum_probs=59.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+...-+ .. +++ .+....+|+|+.|+|...- +-
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~---~AtVti~hs-~T---------~~l------~~~~~~ADIvV~AvGkp~~--i~ 215 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNA---NATVDICHI-FT---------KDL------KAHTKKADIVIVGVGKPNL--IT 215 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCC-CC---------cCH------HHHHhhCCEEEEecCcccc--cC
Confidence 479999999999999999988865 344442221 11 111 1224689999999976432 23
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
....+.|+.|||.+-.+- .++ -.+-.++.+...
T Consensus 216 ~~~vk~gavvIDvGin~~-~~g--kl~GDVd~~~~~ 248 (281)
T PRK14183 216 EDMVKEGAIVIDIGINRT-EDG--RLVGDVDFENVA 248 (281)
T ss_pred HHHcCCCcEEEEeecccc-CCC--CeECCccHHHHH
Confidence 345678999999886542 121 245566766665
No 343
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=88.86 E-value=0.32 Score=46.83 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=47.6
Q ss_pred EECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-hhhH--
Q 017153 44 VVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-KKFG-- 118 (376)
Q Consensus 44 IvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~~~~-- 118 (376)
|+|. |.+|..+.+.|.+.+| ++.+. +++.. -+.+... ...... ++. ...++|+||+|+|.... .+..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~~--g~~~~~-s~~~~~~~advVil~vp~~~~~~~v~~g 72 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH---PVRVF-DLFPDAVEEAVAA--GAQAAA-SPAEAAEGADRVITMLPAGQHVISVYSG 72 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHHc--CCeecC-CHHHHHhcCCEEEEeCCChHHHHHHHcC
Confidence 4786 9999999999987644 55433 33211 0111111 111111 222 34789999999998543 3333
Q ss_pred -HHH---HhCCCeEEEcCCC
Q 017153 119 -PIA---VEKGSIVVDNSSA 134 (376)
Q Consensus 119 -~~~---~~~G~~VIDlS~~ 134 (376)
..+ ...|..|||.|.-
T Consensus 73 ~~~l~~~~~~g~~vid~st~ 92 (288)
T TIGR01692 73 DEGILPKVAKGSLLIDCSTI 92 (288)
T ss_pred cchHhhcCCCCCEEEECCCC
Confidence 222 2457789998854
No 344
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=88.72 E-value=0.63 Score=45.81 Aligned_cols=80 Identities=8% Similarity=0.061 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEecCCCCC-----ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhh-hhHHHH--
Q 017153 50 AVGQEFLSVLSDRDFPYRSIKMLASKRSAG-----KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK-KFGPIA-- 121 (376)
Q Consensus 50 ~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-----~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~-~~~~~~-- 121 (376)
|.|.-+.+.|...+| ++.+....+..- ..+...+ ....+...+...++|+||+|+|.+... +....+
T Consensus 30 ~gGspMArnLlkAGh---eV~V~Drnrsa~e~e~~e~LaeaG--A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 30 YGGSRMAIEFAMAGH---DVVLAEPNREFMSDDLWKKVEDAG--VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred CCHHHHHHHHHHCCC---EEEEEeCChhhhhhhhhHHHHHCC--CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 677888888877544 555443211110 0111111 122221123346899999999987653 333322
Q ss_pred -HhCCCeEEEcCCC
Q 017153 122 -VEKGSIVVDNSSA 134 (376)
Q Consensus 122 -~~~G~~VIDlS~~ 134 (376)
...|..|||.|.-
T Consensus 105 ~L~~GaIVID~STI 118 (341)
T TIGR01724 105 HVPENAVICNTCTV 118 (341)
T ss_pred cCCCCCEEEECCCC
Confidence 2468889988764
No 345
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=88.70 E-value=1.1 Score=44.06 Aligned_cols=89 Identities=17% Similarity=0.320 Sum_probs=54.3
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEe----e
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVE----E 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~----~ 93 (376)
||.|+|+ |-+|.|+++.|...+. -++..+- ..+..++.+-+ ....+.+. .
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv--g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF--GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHAN 77 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC--CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 6899999 9999999999887643 3343331 11122221110 01122222 1
Q ss_pred cCc-----cCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 94 LTE-----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 94 ~~~-----~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
+.. +.|.+.|+|+.|+....++.+..++ ...++.+||..
T Consensus 78 i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~g 122 (312)
T cd01489 78 IKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESG 122 (312)
T ss_pred CCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 211 2247899999999998887777655 57788899854
No 346
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=88.63 E-value=1.3 Score=44.04 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=47.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF- 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~- 117 (376)
..||.|+|+ |-+|+..++.|.+++ .-++ .+++|...- ..+. +..... ..-+..+|+||+|++.+.+...
T Consensus 174 ~k~vLvIGa-Gem~~l~a~~L~~~g--~~~i-~v~nRt~~~--~~~~--~~~~~~--~~~~~~~DvVIs~t~~Tas~~p~ 243 (338)
T PRK00676 174 KASLLFIGY-SEINRKVAYYLQRQG--YSRI-TFCSRQQLT--LPYR--TVVREE--LSFQDPYDVIFFGSSESAYAFPH 243 (338)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHcC--CCEE-EEEcCCccc--cchh--hhhhhh--hhcccCCCEEEEcCCcCCCCCce
Confidence 479999999 999999999999873 2333 355554321 1111 110000 0123678999998543222111
Q ss_pred -HHHHHhC--CCeEEEcCCC
Q 017153 118 -GPIAVEK--GSIVVDNSSA 134 (376)
Q Consensus 118 -~~~~~~~--G~~VIDlS~~ 134 (376)
.....+. .-.+||++=+
T Consensus 244 i~~~~~~~~~~r~~iDLAvP 263 (338)
T PRK00676 244 LSWESLADIPDRIVFDFNVP 263 (338)
T ss_pred eeHHHHhhccCcEEEEecCC
Confidence 1111111 1358999866
No 347
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=88.63 E-value=0.82 Score=45.48 Aligned_cols=79 Identities=5% Similarity=0.075 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEecCCCC--C----ceeeecCcceEEeecCccCCCCCcEEEEcCCCch-hhhhHHHHH
Q 017153 50 AVGQEFLSVLSDRDFPYRSIKMLASKRSA--G----KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKFGPIAV 122 (376)
Q Consensus 50 ~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g----~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~-s~~~~~~~~ 122 (376)
|.|..+...|.+++| ++.+.. ++.. . ..+.. ..+.+.....+...++|+||+|+|... ..+....+.
T Consensus 30 ~gG~~MA~~La~aG~---~V~v~D-r~~~~l~~~~~~~l~~--~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~ 103 (342)
T PRK12557 30 YGGSRMAIEFAEAGH---DVVLAE-PNRSILSEELWKKVED--AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNIL 103 (342)
T ss_pred cCHHHHHHHHHhCCC---eEEEEE-CCHHHhhHHHHHHHHH--CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHH
Confidence 678888888877644 454443 3211 0 01111 112322211223478999999999887 555555443
Q ss_pred ---hCCCeEEEcCCC
Q 017153 123 ---EKGSIVVDNSSA 134 (376)
Q Consensus 123 ---~~G~~VIDlS~~ 134 (376)
..|..|||.|.-
T Consensus 104 ~~L~~g~IVId~ST~ 118 (342)
T PRK12557 104 PHLPENAVICNTCTV 118 (342)
T ss_pred hhCCCCCEEEEecCC
Confidence 468889998863
No 348
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.61 E-value=0.69 Score=48.38 Aligned_cols=92 Identities=20% Similarity=0.372 Sum_probs=51.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------CCcee-eec----C---cceE--E-eecC-----
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------AGKQL-SFQ----D---KAYT--V-EELT----- 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------~g~~~-~~~----~---~~~~--v-~~~~----- 95 (376)
.-||.|+|+ |.+|...++.+...+ .++.++..+.. .|-.. ... + ..+. + .+..
T Consensus 164 ~akVlViGa-G~iGl~Aa~~ak~lG---A~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 164 PAKVLVIGA-GVAGLAAIGAANSLG---AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 369999999 999999999888762 34444432211 11100 000 0 0000 0 0000
Q ss_pred --ccCCCCCcEEEEcC-----CC--chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 96 --EDSFDGVDIALFSA-----GG--SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 96 --~~~~~~~DvVf~a~-----~~--~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.+...++|+||.|. +. -.+++.. +..+.|..|||++.+-
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv-~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMV-DSMKAGSVIVDLAAEQ 287 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCCeeehHHHH-hhCCCCCEEEEeeeCC
Confidence 11246899999998 22 2444443 3456899999999874
No 349
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=88.56 E-value=1.3 Score=42.78 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=24.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
|||.|.|++|.+|.+|.+.|. +..++.++..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~----~~~~v~a~~~ 31 (281)
T COG1091 1 MKILITGANGQLGTELRRALP----GEFEVIATDR 31 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC----CCceEEeccC
Confidence 459999999999999999886 3467766643
No 350
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=88.54 E-value=1.7 Score=42.43 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=26.9
Q ss_pred CCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCC
Q 017153 99 FDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMV 138 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~ 138 (376)
+.++|+||+|++...++-+...+ ...+..+|+ +...++
T Consensus 106 i~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~--aalGfd 144 (307)
T cd01486 106 IKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN--AALGFD 144 (307)
T ss_pred HhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE--EEeccc
Confidence 36899999999999887555444 356778886 344443
No 351
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=88.53 E-value=1.7 Score=43.62 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=56.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.+++..|... ..-++..+- ..+..++.+-+ ....+.++.
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~--Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASA--GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHc--CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 479999999 99999999999876 333555442 12222222111 011223322
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
++++ .+.++|+||+|++...++.+...+ ...|+.+|..+
T Consensus 118 ~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~ 163 (370)
T PRK05600 118 ERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGT 163 (370)
T ss_pred eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2221 246899999999998888777655 46788877554
No 352
>PRK09291 short chain dehydrogenase; Provisional
Probab=88.44 E-value=0.66 Score=42.94 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=25.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+|.|.|+||.+|+.+++.|.+++ .+++++.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG---HNVIAGV 33 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 579999999999999999998863 4565544
No 353
>PLN02650 dihydroflavonol-4-reductase
Probab=88.44 E-value=0.71 Score=45.33 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=26.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++|.|.||||++|+.|++.|.+++ .+++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~~ 36 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG---YTVRATV 36 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC---CEEEEEE
Confidence 45799999999999999999998863 3665543
No 354
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=88.42 E-value=0.55 Score=51.92 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=54.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC-------CCCeEEEEEecCCCC-Cce--eee-----cCcceEEeecCcc----C
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSA-GKQ--LSF-----QDKAYTVEELTED----S 98 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~-------~p~~~l~~v~s~~~~-g~~--~~~-----~~~~~~v~~~~~~----~ 98 (376)
++++|+|+|. |.||+.++++|.++. .-.++++.++.++.. -+. +.. ...+. ....+.+ .
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~-~~~~~~~~~~e~ 534 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDE-AVEWDEESLFLW 534 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhh-cCCccHHHHHHH
Confidence 3699999998 999999999986541 024677777643321 010 000 00000 0001111 1
Q ss_pred CC----CCcEEEEcCCCchhhhhHHHHHhCCCeEEEc
Q 017153 99 FD----GVDIALFSAGGSISKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 99 ~~----~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDl 131 (376)
+. ..+++++|++..........++++|+.||-.
T Consensus 535 i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVta 571 (810)
T PRK09466 535 LRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISA 571 (810)
T ss_pred HhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcC
Confidence 11 2369999999876666667889999999943
No 355
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.30 E-value=0.81 Score=46.14 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=40.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+.+.+.|..- .+++.+. ++..... .....+. +.++ +.++|+|++++|-..
T Consensus 116 gktvGIIG~-G~IG~~vA~~l~a~---G~~V~~~-dp~~~~~-----~~~~~~~--~L~ell~~sDiI~lh~PLt~ 179 (378)
T PRK15438 116 DRTVGIVGV-GNVGRRLQARLEAL---GIKTLLC-DPPRADR-----GDEGDFR--SLDELVQEADILTFHTPLFK 179 (378)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHC---CCEEEEE-CCccccc-----ccccccC--CHHHHHhhCCEEEEeCCCCC
Confidence 479999998 99999999999864 4566544 3211100 0001111 2233 468999999998654
No 356
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=88.27 E-value=1.2 Score=42.60 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=23.5
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
||.|.|+||++|+.+++.|.++++ ++..+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~---~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH---EVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC---eEEEE
Confidence 588999999999999999988643 45444
No 357
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.25 E-value=1.8 Score=44.52 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=52.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc------eeeecCcceEEe-ec-CccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK------QLSFQDKAYTVE-EL-TEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~------~~~~~~~~~~v~-~~-~~~~~~~~DvVf~a~~~ 111 (376)
.||+|+|. |..|+.+++.|.+.+ .++... +.+.... .+.. ..+.+. .. .++.+.++|+|+-..+-
T Consensus 15 ~~i~v~G~-G~sG~a~a~~L~~~G---~~V~~~-D~~~~~~~~~~~~~l~~--~gi~~~~~~~~~~~~~~~dlVV~Spgi 87 (458)
T PRK01710 15 KKVAVVGI-GVSNIPLIKFLVKLG---AKVTAF-DKKSEEELGEVSNELKE--LGVKLVLGENYLDKLDGFDVIFKTPSM 87 (458)
T ss_pred CeEEEEcc-cHHHHHHHHHHHHCC---CEEEEE-CCCCCccchHHHHHHHh--CCCEEEeCCCChHHhccCCEEEECCCC
Confidence 68999998 999999999998873 355433 2221111 1111 123332 11 13345678999887554
Q ss_pred chhhhhHHHHHhCCCeEEE
Q 017153 112 SISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VID 130 (376)
....+...++.+.|+.|+.
T Consensus 88 ~~~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 88 RIDSPELVKAKEEGAYITS 106 (458)
T ss_pred CCCchHHHHHHHcCCcEEe
Confidence 4555666777789999984
No 358
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.21 E-value=0.89 Score=44.03 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=51.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCC--Cchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAG--GSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~--~~~s~~ 116 (376)
..+|.|+|.+..+|+-|..+|.++ +..+....+.. +++ .+....+|++|.|.| ..+..
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~---~atVtv~hs~T----------~~l------~~~~~~ADIvi~avG~p~~v~~- 218 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLA---GCTVTVCHRFT----------KNL------RHHVRNADLLVVAVGKPGFIPG- 218 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC---CCeEEEEECCC----------CCH------HHHHhhCCEEEEcCCCcccccH-
Confidence 489999999999999999999875 34554443321 011 123468999999994 44443
Q ss_pred hHHHHHhCCCeEEEcCCCC
Q 017153 117 FGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~ 135 (376)
...+.|+.|||.+-.+
T Consensus 219 ---~~vk~gavVIDvGin~ 234 (285)
T PRK10792 219 ---EWIKPGAIVIDVGINR 234 (285)
T ss_pred ---HHcCCCcEEEEccccc
Confidence 4567899999988543
No 359
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.15 E-value=3.9 Score=39.62 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.++.+|+=|..+|.++. .+..+....|.. +++ .+....+|+|+.|.|.-.- +-
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~-~~atVtvchs~T----------~~l------~~~~k~ADIvV~AvGkp~~--i~ 218 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRS-ENATVTLCHTGT----------RDL------AAHTRRADIIVAAAGVAHL--VT 218 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhcc-CCCEEEEeCCCC----------CCH------HHHHHhCCEEEEecCCcCc--cC
Confidence 4899999999999999999998631 134444332211 011 1224689999999877522 33
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++ +...
T Consensus 219 ~~~ik~GavVIDvGin~-~~~g--kl~GDvd-~~v~ 250 (284)
T PRK14193 219 ADMVKPGAAVLDVGVSR-AGDG--KLVGDVH-PDVW 250 (284)
T ss_pred HHHcCCCCEEEEccccc-cCCC--cEEeecC-HhHH
Confidence 45567899999988664 2222 2455666 4444
No 360
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.00 E-value=1.1 Score=43.67 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=60.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|.. +++ .+....+|+|+.|.|... -+-
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~---~atVtv~hs~T----------~~l------~~~~~~ADIvIsAvGkp~--~i~ 216 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAA---NATVTIAHSRT----------QDL------ASITREADILVAAAGRPN--LIG 216 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEccCCcC--ccC
Confidence 489999999999999999999875 34554333211 011 122367999999988642 233
Q ss_pred HHHHhCCCeEEEcCCCCCCCCC-CcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVEN-VPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~-~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+--++. .--.+-.++.+.+.
T Consensus 217 ~~~ik~gavVIDvGin~~~~~~~~gkl~GDvd~~~v~ 253 (297)
T PRK14186 217 AEMVKPGAVVVDVGIHRLPSSDGKTRLCGDVDFEEVE 253 (297)
T ss_pred HHHcCCCCEEEEeccccccccccCCceeCCccHHHHH
Confidence 4566789999998876521110 01245567766665
No 361
>PRK08291 ectoine utilization protein EutC; Validated
Probab=87.98 E-value=0.78 Score=45.24 Aligned_cols=92 Identities=16% Similarity=0.101 Sum_probs=53.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec---CcceEEeec-Cc-cCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ---DKAYTVEEL-TE-DSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~---~~~~~v~~~-~~-~~~~~~DvVf~a~~~~ 112 (376)
..+++|+|+ |..|+..+..+... ..++-+.+.+++.. .+.+... ...+.+... +. +.+.++|+|+.|++..
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~--~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLV--RPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 469999998 99999988888753 23444445554321 1111110 001233222 22 2357899999999885
Q ss_pred hhhhhH-HHHHhCCCeEEEcCCCC
Q 017153 113 ISKKFG-PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~s~~~~-~~~~~~G~~VIDlS~~~ 135 (376)
. ... ...++.|..|....++.
T Consensus 209 ~--p~i~~~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 209 E--PILKAEWLHPGLHVTAMGSDA 230 (330)
T ss_pred C--cEecHHHcCCCceEEeeCCCC
Confidence 3 222 23457788888776664
No 362
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.95 E-value=1.1 Score=45.20 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=40.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+.+.+.|..- .+++.+. ++..... .. ...+. +.++ +.++|+|.+++|-+.
T Consensus 116 gktvGIIG~-G~IG~~va~~l~a~---G~~V~~~-Dp~~~~~---~~--~~~~~--~l~ell~~aDiV~lh~Plt~ 179 (381)
T PRK00257 116 ERTYGVVGA-GHVGGRLVRVLRGL---GWKVLVC-DPPRQEA---EG--DGDFV--SLERILEECDVISLHTPLTK 179 (381)
T ss_pred cCEEEEECC-CHHHHHHHHHHHHC---CCEEEEE-CCccccc---cc--Ccccc--CHHHHHhhCCEEEEeCcCCC
Confidence 478999998 99999999999864 4566544 3211110 00 11111 2233 478999999999754
No 363
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=87.85 E-value=0.62 Score=44.90 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDR 62 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~ 62 (376)
|||.|.|++|++|+.|++.|.++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~ 23 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL 23 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc
Confidence 58999999999999999999876
No 364
>PLN02928 oxidoreductase family protein
Probab=87.80 E-value=0.98 Score=44.98 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=24.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
..+|+|+|. |.+|+.+.+.|..- .+++.+.
T Consensus 159 gktvGIiG~-G~IG~~vA~~l~af---G~~V~~~ 188 (347)
T PLN02928 159 GKTVFILGY-GAIGIELAKRLRPF---GVKLLAT 188 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhC---CCEEEEE
Confidence 479999998 99999999999764 4566654
No 365
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.70 E-value=2.1 Score=39.23 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
..||+|+|+ |-+|.+++..|...++
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv 45 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI 45 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 478999999 9999999999988643
No 366
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.65 E-value=2 Score=43.17 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=55.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CC-----------CCceeee--------cCcceEEeec-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RS-----------AGKQLSF--------QDKAYTVEEL- 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~-----------~g~~~~~--------~~~~~~v~~~- 94 (376)
..||.|+|+ |-+|.+++..|...+. -++..+-.. +. .|+.-.. ....+.+...
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv--g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV--GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC--CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 579999999 8899999999988733 345444221 11 1221110 0112222221
Q ss_pred ---Ccc----CCCCCcEEEEcCCCchhhhhHHH-HHhCCCeEEEcC
Q 017153 95 ---TED----SFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNS 132 (376)
Q Consensus 95 ---~~~----~~~~~DvVf~a~~~~~s~~~~~~-~~~~G~~VIDlS 132 (376)
+.+ .+.++|+|+.|+....++.+..+ ..+.++.+|..+
T Consensus 212 ~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 212 ERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred ccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 13689999999999877765554 467888888754
No 367
>PRK08223 hypothetical protein; Validated
Probab=87.59 E-value=2.2 Score=41.33 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=55.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CC-----------CCceeee--------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RS-----------AGKQLSF--------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~-----------~g~~~~~--------~~~~~~v~--- 92 (376)
.-||.|+|+ |-+|.+++..|...+ .-++..+-.+ +. .|+.-.. -...+.++
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aG--VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLG--IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhC--CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 478999999 888999999998763 3344443211 11 2221110 01122332
Q ss_pred -ecCccC----CCCCcEEEEcCCCc--hhhhhHH-HHHhCCCeEEEcCCCCCCC
Q 017153 93 -ELTEDS----FDGVDIALFSAGGS--ISKKFGP-IAVEKGSIVVDNSSAFRMV 138 (376)
Q Consensus 93 -~~~~~~----~~~~DvVf~a~~~~--~s~~~~~-~~~~~G~~VIDlS~~~R~~ 138 (376)
.++++. +.++|+|++|++.. .++.+.. .....|+.+|..+ .+.+.
T Consensus 104 ~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~-~~g~~ 156 (287)
T PRK08223 104 EGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAA-PLGMG 156 (287)
T ss_pred cccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEe-ccCCe
Confidence 222322 46899999999874 4444444 4467899998754 44443
No 368
>PRK08267 short chain dehydrogenase; Provisional
Probab=87.53 E-value=1.1 Score=41.72 Aligned_cols=31 Identities=10% Similarity=0.257 Sum_probs=25.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++.|.||||.+|+.+.+.|.+++ .++..+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 32 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEG---WRVGAYD 32 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC---CeEEEEe
Confidence 579999999999999999998863 4565543
No 369
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.51 E-value=1.2 Score=43.02 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=59.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+...-|.. +++ .+....+|+|+.|.|...- +-
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~---~atVt~chs~T----------~nl------~~~~~~ADIvIsAvGkp~~--i~ 215 (282)
T PRK14166 157 GKDAVIIGASNIVGRPMATMLLNA---GATVSVCHIKT----------KDL------SLYTRQADLIIVAAGCVNL--LR 215 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEcCCCcCc--cC
Confidence 479999999999999999998864 34544332211 011 1223689999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++.+.++
T Consensus 216 ~~~vk~GavVIDvGin~-~~~g--kl~GDVd~~~v~ 248 (282)
T PRK14166 216 SDMVKEGVIVVDVGINR-LESG--KIVGDVDFEEVS 248 (282)
T ss_pred HHHcCCCCEEEEecccc-cCCC--CeeCCCCHHHHH
Confidence 34567899999988654 2121 245566766665
No 370
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=87.49 E-value=2.5 Score=38.61 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=24.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKM 71 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~ 71 (376)
|+|.|.|+||.+|+++.+.|.+++ +...+..
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~-~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERY-PDATVHA 31 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhC-CCCEEEE
Confidence 579999999999999999998752 2344443
No 371
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=87.43 E-value=1.1 Score=46.55 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeec-CccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEEL-TEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~-~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
.++++|+|+ |-+|+.+...|...+ .++... +++. ..+.+.... ....... +...+.++|+|+.|+|.+...
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~G---~~V~i~-~R~~~~~~~la~~~-~~~~~~~~~~~~l~~~DiVInatP~g~~~- 404 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARAG---AELLIF-NRTKAHAEALASRC-QGKAFPLESLPELHRIDIIINCLPPSVTI- 404 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCC---CEEEEE-eCCHHHHHHHHHHh-ccceechhHhcccCCCCEEEEcCCCCCcc-
Confidence 468999997 999999999998763 355543 3321 111111100 0011111 122356899999999987642
Q ss_pred hHHHHHhCCCeEEEcCCC
Q 017153 117 FGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~ 134 (376)
...+ . ..|+|+.-.
T Consensus 405 -~~~l-~--~~v~D~~Y~ 418 (477)
T PRK09310 405 -PKAF-P--PCVVDINTL 418 (477)
T ss_pred -hhHH-h--hhEEeccCC
Confidence 1222 2 278887653
No 372
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.40 E-value=1.2 Score=43.30 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=60.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|.|+|.+..+|+=|..+|.++. .....+....+.. .++ .+....+|+|+.|.|.. .-.
T Consensus 159 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t----------~~l------~~~~~~ADIvI~Avg~~--~li 220 (295)
T PRK14174 159 GKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT----------KDI------PSYTRQADILIAAIGKA--RFI 220 (295)
T ss_pred CCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc----------hhH------HHHHHhCCEEEEecCcc--Ccc
Confidence 4799999999999999988887520 0122333222210 000 22347899999999765 224
Q ss_pred HHHHHhCCCeEEEcCCCCCCCC--C-CcEEeeccCHHhhcC
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVE--N-VPLVIPEVNPEAMSG 155 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~--~-~~~~lpevN~~~i~~ 155 (376)
-+...+.|+.|||.+-++-.++ . -.-.+-.++.+.++.
T Consensus 221 ~~~~vk~GavVIDVgi~~~~~~~~~~g~kl~GDVd~~~v~~ 261 (295)
T PRK14174 221 TADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDVDYEGVSA 261 (295)
T ss_pred CHHHcCCCCEEEEeeccccccccccCCCceECCcCHHHHHh
Confidence 4456688999999988762111 0 113556677766653
No 373
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=87.38 E-value=2.7 Score=41.98 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=55.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~--- 92 (376)
..||.|+|+ |-+|.+++..|...+.. ++..+- ..+..++.+-+ ....+.++
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVG--HITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC--eEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 479999999 88999999999876433 444332 11222221110 01223332
Q ss_pred -ecCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 93 -ELTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 93 -~~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
.++++ .+.++|+|++|++...++.+...+ .+.++.+|..+
T Consensus 105 ~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 105 RRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 22222 247899999999998887766654 56788888654
No 374
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.30 E-value=1.1 Score=43.16 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=58.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+-|..+|.+. ...+....++. +++ .+....+|+||.|.|.. .-+-
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~---~atVtv~hs~t----------~~L------~~~~~~ADIvI~Avgk~--~lv~ 210 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNA---DATVTICHSKT----------ENL------KAELRQADILVSAAGKA--GFIT 210 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhC---CCeeEEEecCh----------hHH------HHHHhhCCEEEECCCcc--cccC
Confidence 489999999999999999888764 33444333321 011 22346899999999743 1123
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-++ .+ + -.+..++.+.++
T Consensus 211 ~~~vk~GavVIDVgi~~-~~-g--kl~GDvdf~~~~ 242 (279)
T PRK14178 211 PDMVKPGATVIDVGINQ-VN-G--KLCGDVDFDAVK 242 (279)
T ss_pred HHHcCCCcEEEEeeccc-cC-C--CCcCCccHHHHH
Confidence 34468899999999875 21 1 133445656655
No 375
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.27 E-value=1.6 Score=43.30 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=55.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC----C-----------CCc--eeee--------cCcceEEe-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR----S-----------AGK--QLSF--------QDKAYTVE- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~----~-----------~g~--~~~~--------~~~~~~v~- 92 (376)
..||.|+|+ |-+|.+++..|...+. -++..+-... . .|+ +-.. -...+.+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv--g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV--GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC--CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 478999999 9999999999988633 3555443211 1 111 0000 01122222
Q ss_pred ---ecCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 93 ---ELTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 93 ---~~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
.++++ .+.++|+|++|++...++.+...+ .+.|+.+|..+
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 101 IVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred EeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 22221 246899999999998877766654 56788888654
No 376
>PRK12939 short chain dehydrogenase; Provisional
Probab=86.89 E-value=1.4 Score=40.41 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=25.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
.+++.|.|++|.+|+.+++.|.+++ .+++.+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G---~~v~~~ 37 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG---ATVAFN 37 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC---CEEEEE
Confidence 4789999999999999999998763 366555
No 377
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.71 E-value=1.6 Score=39.85 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=45.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCC-CCCcEEEEc-CCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSF-DGVDIALFS-AGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a-~~~~~s~ 115 (376)
.++|+|+|. |.+|+.+.+.|.+.+ .+++ +.+.+.. -..+.... .....+. .+.+ .++|+++-| .+.-...
T Consensus 28 gk~v~I~G~-G~vG~~~A~~L~~~G---~~Vv-v~D~~~~~~~~~~~~~-g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~ 100 (200)
T cd01075 28 GKTVAVQGL-GKVGYKLAEHLLEEG---AKLI-VADINEEAVARAAELF-GATVVAP-EEIYSVDADVFAPCALGGVIND 100 (200)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEE-EEcCCHHHHHHHHHHc-CCEEEcc-hhhccccCCEEEecccccccCH
Confidence 479999999 999999999998863 4666 3332211 01110010 1111111 2223 379999954 5555666
Q ss_pred hhHHHHHhCCCeEE
Q 017153 116 KFGPIAVEKGSIVV 129 (376)
Q Consensus 116 ~~~~~~~~~G~~VI 129 (376)
+.++++ ++++|
T Consensus 101 ~~~~~l---~~~~v 111 (200)
T cd01075 101 DTIPQL---KAKAI 111 (200)
T ss_pred HHHHHc---CCCEE
Confidence 665544 45544
No 378
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=86.67 E-value=2.5 Score=39.11 Aligned_cols=90 Identities=16% Similarity=0.274 Sum_probs=55.3
Q ss_pred CceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEE--eecCccCCCC
Q 017153 26 PMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTV--EELTEDSFDG 101 (376)
Q Consensus 26 ~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v--~~~~~~~~~~ 101 (376)
|.|-+++ ..+|.|+|+ |-+|..=+++|.+- ..++.+++ ++. ...+.. ....+.. ...+++++.+
T Consensus 5 Pl~~~l~------~k~VlvvGg-G~va~rKa~~ll~~---ga~v~Vvs-~~~-~~el~~~~~~~~i~~~~~~~~~~~~~~ 72 (210)
T COG1648 5 PLFLDLE------GKKVLVVGG-GSVALRKARLLLKA---GADVTVVS-PEF-EPELKALIEEGKIKWIEREFDAEDLDD 72 (210)
T ss_pred ceEEEcC------CCEEEEECC-CHHHHHHHHHHHhc---CCEEEEEc-CCc-cHHHHHHHHhcCcchhhcccChhhhcC
Confidence 5555554 579999998 99999888888863 45665444 333 221111 0011211 2344555667
Q ss_pred CcEEEEcCCC-chhhhhHHHHHhCCCe
Q 017153 102 VDIALFSAGG-SISKKFGPIAVEKGSI 127 (376)
Q Consensus 102 ~DvVf~a~~~-~~s~~~~~~~~~~G~~ 127 (376)
+++||.|++. ....+....+.+.++.
T Consensus 73 ~~lviaAt~d~~ln~~i~~~a~~~~i~ 99 (210)
T COG1648 73 AFLVIAATDDEELNERIAKAARERRIL 99 (210)
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhCCc
Confidence 9999999988 4455555666666654
No 379
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.64 E-value=1.3 Score=43.01 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=58.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|+. +++ .+....+|+|+.|.|.-- -.-
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~---~ATVtichs~T----------~~L------~~~~~~ADIvV~AvGkp~--~i~ 217 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKE---NCSVTICHSKT----------HNL------SSITSKADIVVAAIGSPL--KLT 217 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEccCCCC--ccC
Confidence 378999999999999999999875 34554332211 011 122367999999988532 233
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++.+.++
T Consensus 218 ~~~vk~GavVIDvGin~-~~~g--kl~GDVd~~~v~ 250 (288)
T PRK14171 218 AEYFNPESIVIDVGINR-ISGN--KIIGDVDFENVK 250 (288)
T ss_pred HHHcCCCCEEEEeeccc-cCCC--CeECCccHHHHH
Confidence 45567899999987543 2111 134456666665
No 380
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=86.48 E-value=0.89 Score=44.11 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||.|.|+||++|..|++.|.+.+ .+++++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEe
Confidence 589999999999999999998763 3666553
No 381
>PRK06823 ornithine cyclodeaminase; Validated
Probab=86.45 E-value=1.5 Score=43.00 Aligned_cols=105 Identities=10% Similarity=0.135 Sum_probs=60.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cCcceEEeec-Cc-cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEEL-TE-DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~~ 113 (376)
..+++|+|+ |..++.-++.+..- +| ++-+.+.+++... +.+.. ....+.+... +. +...++|||++||++..
T Consensus 128 ~~~l~iiG~-G~qA~~~~~a~~~v-~~-i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~ 204 (315)
T PRK06823 128 VSAIGIVGT-GIQARMQLMYLKNV-TD-CRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE 204 (315)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhc-CC-CCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC
Confidence 579999997 99999999987754 24 4444455544221 11110 0012233222 22 33579999999998764
Q ss_pred hhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
- -+-...++.|..|+-.+++.. ..-|+.++-++
T Consensus 205 P-~~~~~~l~~G~hi~~iGs~~p-------~~~Eld~~~l~ 237 (315)
T PRK06823 205 P-LLQAEDIQPGTHITAVGADSP-------GKQELDAELVA 237 (315)
T ss_pred c-eeCHHHcCCCcEEEecCCCCc-------ccccCCHHHHh
Confidence 2 222345678988887766532 12355556555
No 382
>PRK07774 short chain dehydrogenase; Provisional
Probab=86.39 E-value=1.5 Score=40.39 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=25.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|+||++|..+.+.|.+++ .+++.+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g---~~vi~~~ 37 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREG---ASVVVAD 37 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999998863 3565443
No 383
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.37 E-value=1.6 Score=45.45 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=53.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEee--cCccCCCCCcEEEEcCCCchhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEE--LTEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~--~~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
.||.|+|. |.+|...++.|...+ .++.. .+.+.. . ... ....+.+.. ..++.+.++|+||.+.+-.....
T Consensus 13 ~~v~V~G~-G~sG~aa~~~L~~~G---~~v~~-~D~~~~-~-~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p 85 (488)
T PRK03369 13 APVLVAGA-GVTGRAVLAALTRFG---ARPTV-CDDDPD-A-LRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAP 85 (488)
T ss_pred CeEEEEcC-CHHHHHHHHHHHHCC---CEEEE-EcCCHH-H-HHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCH
Confidence 68999998 999999999888763 35544 332211 1 110 001122221 12334567899999987766667
Q ss_pred hHHHHHhCCCeEE
Q 017153 117 FGPIAVEKGSIVV 129 (376)
Q Consensus 117 ~~~~~~~~G~~VI 129 (376)
...++.++|+.|+
T Consensus 86 ~~~~a~~~gi~v~ 98 (488)
T PRK03369 86 VLAAAAAAGVPIW 98 (488)
T ss_pred HHHHHHHCCCcEe
Confidence 7777888999988
No 384
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=86.33 E-value=0.97 Score=45.92 Aligned_cols=34 Identities=35% Similarity=0.598 Sum_probs=27.9
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+...|.++||||.+|+.+.+.|.+++ +.+.++.
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrg---f~vra~V 110 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRG---FSVRALV 110 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCC---Ceeeeec
Confidence 346899999999999999999999985 4555554
No 385
>PLN02583 cinnamoyl-CoA reductase
Probab=86.13 E-value=1.4 Score=42.25 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=26.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.|+||++|+.+++.|.++++ ++.++.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~---~V~~~~ 37 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY---TVHAAV 37 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEE
Confidence 46899999999999999999988643 666554
No 386
>PRK10637 cysG siroheme synthase; Provisional
Probab=86.13 E-value=2.7 Score=43.45 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=55.3
Q ss_pred CCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEEe--ecCccCCC
Q 017153 25 KPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVE--ELTEDSFD 100 (376)
Q Consensus 25 ~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v~--~~~~~~~~ 100 (376)
-|+|-.++ ..||.|+|+ |-++..=++.|++. ..++.+++ +.... .+.. ....+.+. +..+.+++
T Consensus 4 ~P~~~~l~------~~~vlvvGg-G~vA~rk~~~ll~~---ga~v~vis-p~~~~-~~~~l~~~~~i~~~~~~~~~~dl~ 71 (457)
T PRK10637 4 LPIFCQLR------DRDCLLVGG-GDVAERKARLLLDA---GARLTVNA-LAFIP-QFTAWADAGMLTLVEGPFDESLLD 71 (457)
T ss_pred eceEEEcC------CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEc-CCCCH-HHHHHHhCCCEEEEeCCCChHHhC
Confidence 46665554 489999999 99988877777664 34555443 33211 1110 01123332 34455678
Q ss_pred CCcEEEEcCCC-chhhhhHHHHHhCCCeE
Q 017153 101 GVDIALFSAGG-SISKKFGPIAVEKGSIV 128 (376)
Q Consensus 101 ~~DvVf~a~~~-~~s~~~~~~~~~~G~~V 128 (376)
++++||.|++. ....+....+.+.|+.|
T Consensus 72 ~~~lv~~at~d~~~n~~i~~~a~~~~~lv 100 (457)
T PRK10637 72 TCWLAIAATDDDAVNQRVSEAAEARRIFC 100 (457)
T ss_pred CCEEEEECCCCHHHhHHHHHHHHHcCcEE
Confidence 99999999977 44555555555667553
No 387
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=86.11 E-value=0.94 Score=48.83 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+||.|.||||++|+.|++.|.+++ +..++.++.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNY-PDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEe
Confidence 4799999999999999999888752 245776554
No 388
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=86.09 E-value=1.8 Score=33.05 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=24.6
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
||.|+|+ |++|.|+...|.+. ..++..+..
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~---g~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAEL---GKEVTLIER 30 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHT---TSEEEEEES
T ss_pred CEEEECc-CHHHHHHHHHHHHh---CcEEEEEec
Confidence 6899999 99999999999875 457766654
No 389
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=85.81 E-value=1 Score=43.18 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=23.9
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~ 75 (376)
|.|.||||++|+.|++.|.+++ .+++++..+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEecC
Confidence 6899999999999999998863 344444443
No 390
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=85.79 E-value=1.3 Score=43.39 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=22.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD 63 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~ 63 (376)
+||.|.|+||++|+.|++.|.+++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC
Confidence 589999999999999999998863
No 391
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=85.67 E-value=0.98 Score=44.19 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD 63 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~ 63 (376)
|||.|.|+||++|+.|++.|.+++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g 24 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNT 24 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhC
Confidence 589999999999999999998863
No 392
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=85.53 E-value=1.7 Score=42.31 Aligned_cols=94 Identities=9% Similarity=0.086 Sum_probs=55.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cC-cceEEeec-Cc-cCCCCCcEEEEcCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QD-KAYTVEEL-TE-DSFDGVDIALFSAGG 111 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~-~~~~v~~~-~~-~~~~~~DvVf~a~~~ 111 (376)
...+++|+|+ |.-|+.-++.+..- +| ++-+.+.+++..- ..+.. .. ..+.+... ++ +...++|||++||++
T Consensus 116 da~~l~iiGa-G~QA~~~~~a~~~v-~~-i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGS-GFQAETQLEGMASV-YN-PKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS 192 (301)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhc-CC-CCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 3589999997 99999999888764 24 4444555543211 11110 00 02223222 22 335799999999997
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
..- -+-...++.|..|+-..++.
T Consensus 193 ~~P-~~~~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 193 DTP-IFNRKYLGDEYHVNLAGSNY 215 (301)
T ss_pred CCc-EecHHHcCCCceEEecCCCC
Confidence 642 22234556788887666653
No 393
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.52 E-value=7.8 Score=37.64 Aligned_cols=97 Identities=16% Similarity=0.295 Sum_probs=60.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC--CeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP--YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p--~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
..+|.|+|.+..+|+=|..+|.++ ++ +..+....|.. +++ .+....+|+|+.|.|.-. -
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~-~~~~~AtVtvchs~T----------~~l------~~~~~~ADIvV~AvG~p~--~ 213 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQK-HPDTNATVTLLHSQS----------ENL------TEILKTADIIIAAIGVPL--F 213 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhC-cCCCCCEEEEeCCCC----------CCH------HHHHhhCCEEEEccCCcC--c
Confidence 489999999999999999988764 13 33443222211 011 122468999999987642 2
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCC-C-CcEEeeccCHHhhc
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVE-N-VPLVIPEVNPEAMS 154 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~-~-~~~~lpevN~~~i~ 154 (376)
.-+...+.|+.|||..-.+-.++ . ..-.+-.++.+...
T Consensus 214 i~~~~ik~GavVIDvGin~~~~~~~~g~kl~GDVd~e~~~ 253 (287)
T PRK14181 214 IKEEMIAEKAVIVDVGTSRVPAANPKGYILVGDVDFNNVV 253 (287)
T ss_pred cCHHHcCCCCEEEEecccccccccCCCCeeEeccchHHHH
Confidence 33455678999999886641111 0 11356667766655
No 394
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.49 E-value=11 Score=36.19 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=55.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCCCceeee-------------------cCcceEEeec-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSAGKQLSF-------------------QDKAYTVEEL- 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~g~~~~~-------------------~~~~~~v~~~- 94 (376)
..+|.|+|. |-+|.++++.|...+ .-++..+-.+ +..++.+-. ......+...
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~G--Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTG--IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcC--CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 478999999 999999999998863 3344444211 122221100 0112223211
Q ss_pred ---Ccc---C-C-CCCcEEEEcCCCchhhhhH-HHHHhCCCeEEEcCCCC
Q 017153 95 ---TED---S-F-DGVDIALFSAGGSISKKFG-PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 95 ---~~~---~-~-~~~DvVf~a~~~~~s~~~~-~~~~~~G~~VIDlS~~~ 135 (376)
+++ . + .++|+|++|.+...++... ..+.+.++++|...++.
T Consensus 107 ~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag 156 (268)
T PRK15116 107 DFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG 156 (268)
T ss_pred cccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 211 1 2 3699999999985554433 44467899999877664
No 395
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=85.39 E-value=1.3 Score=43.75 Aligned_cols=94 Identities=17% Similarity=0.264 Sum_probs=58.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCc-ceEEeecC--ccCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDK-AYTVEELT--EDSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~-~~~v~~~~--~~~~~~~DvVf~a~~~~ 112 (376)
.-.++|||+ |..++--++.+... +|.-++. +.+++.. .+.+.. ... ...+...+ .+...++|+|+.||++.
T Consensus 130 a~~laiIGa-G~qA~~ql~a~~~v-~~~~~I~-i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~ 206 (330)
T COG2423 130 ASTLAIIGA-GAQARTQLEALKAV-RDIREIR-VYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPST 206 (330)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhh-CCccEEE-EEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCC
Confidence 468999998 99999988888754 3555554 4444322 111111 000 11122222 23457999999999998
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAFR 136 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~R 136 (376)
. .-+....++.|..|.-.+++.+
T Consensus 207 ~-Pil~~~~l~~G~hI~aiGad~p 229 (330)
T COG2423 207 E-PVLKAEWLKPGTHINAIGADAP 229 (330)
T ss_pred C-CeecHhhcCCCcEEEecCCCCc
Confidence 7 3444566778999888887764
No 396
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.39 E-value=1.7 Score=44.32 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=49.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|+|+|+ |.+|+.+++.+... ..++.++ ..+. .+..........+... .+.+.++|+||.|++....-...
T Consensus 202 GktVvViG~-G~IG~~va~~ak~~---Ga~ViV~-d~d~-~R~~~A~~~G~~~~~~-~e~v~~aDVVI~atG~~~~i~~~ 274 (413)
T cd00401 202 GKVAVVAGY-GDVGKGCAQSLRGQ---GARVIVT-EVDP-ICALQAAMEGYEVMTM-EEAVKEGDIFVTTTGNKDIITGE 274 (413)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEE-ECCh-hhHHHHHhcCCEEccH-HHHHcCCCEEEECCCCHHHHHHH
Confidence 469999999 99999999988875 2355443 2221 1100000000111111 12346789999999875443322
Q ss_pred -HHHHhCCCeEEEcC
Q 017153 119 -PIAVEKGSIVVDNS 132 (376)
Q Consensus 119 -~~~~~~G~~VIDlS 132 (376)
-...+.|+.++..+
T Consensus 275 ~l~~mk~GgilvnvG 289 (413)
T cd00401 275 HFEQMKDGAIVCNIG 289 (413)
T ss_pred HHhcCCCCcEEEEeC
Confidence 23345678887665
No 397
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.30 E-value=3.2 Score=42.89 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc----eeeecCcceEE-eecCccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK----QLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~----~~~~~~~~~~v-~~~~~~~~~~~DvVf~a~~~~~ 113 (376)
..||+|+|. |..|...++.|.++ ..++.+.-.+..... .+... ...+ ...+++.+.++|+|+..-+-..
T Consensus 8 ~~~v~v~G~-G~sG~~~~~~l~~~---g~~v~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~d~vV~SpgI~~ 81 (468)
T PRK04690 8 GRRVALWGW-GREGRAAYRALRAH---LPAQALTLFCNAVEAREVGALADA--ALLVETEASAQRLAAFDVVVKSPGISP 81 (468)
T ss_pred CCEEEEEcc-chhhHHHHHHHHHc---CCEEEEEcCCCcccchHHHHHhhc--CEEEeCCCChHHccCCCEEEECCCCCC
Confidence 368999999 99999999999986 345543322211110 11111 1111 1223344678899988766555
Q ss_pred hhhhHHHHHhCCCeEEE
Q 017153 114 SKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 114 s~~~~~~~~~~G~~VID 130 (376)
..+...++.+.|+.|+.
T Consensus 82 ~~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 82 YRPEALAAAARGTPFIG 98 (468)
T ss_pred CCHHHHHHHHcCCcEEE
Confidence 56667777889999984
No 398
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=85.30 E-value=1.1 Score=44.06 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=40.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s 114 (376)
..+|||+|. |.+|+++.+.+. ..| ..++.+. ++......... ...... +.++ +..+|+|.+++|-+..
T Consensus 145 gktvGIiG~-G~IG~~va~~l~-~~f-gm~V~~~-~~~~~~~~~~~--~~~~~~--~l~ell~~sDvv~lh~plt~~ 213 (323)
T PRK15409 145 HKTLGIVGM-GRIGMALAQRAH-FGF-NMPILYN-ARRHHKEAEER--FNARYC--DLDTLLQESDFVCIILPLTDE 213 (323)
T ss_pred CCEEEEEcc-cHHHHHHHHHHH-hcC-CCEEEEE-CCCCchhhHHh--cCcEec--CHHHHHHhCCEEEEeCCCChH
Confidence 489999998 999999999986 223 4566533 33211110000 011121 2233 4789999999986543
No 399
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=85.28 E-value=2.5 Score=41.76 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|||||. |.+|+.+.+.|... .+++.+..++ ......... ....+. +.+ .+..+|+|++++|.......
T Consensus 16 gKtVGIIG~-GsIG~amA~nL~d~---G~~ViV~~r~-~~s~~~A~~-~G~~v~--sl~Eaak~ADVV~llLPd~~t~~V 87 (335)
T PRK13403 16 GKTVAVIGY-GSQGHAQAQNLRDS---GVEVVVGVRP-GKSFEVAKA-DGFEVM--SVSEAVRTAQVVQMLLPDEQQAHV 87 (335)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHC---cCEEEEEECc-chhhHHHHH-cCCEEC--CHHHHHhcCCEEEEeCCChHHHHH
Confidence 378999998 99999999999875 4566554332 111000000 012222 333 35789999999998666555
Q ss_pred HH-HHH---hCCCeEEEcCCCC
Q 017153 118 GP-IAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~-~~~---~~G~~VIDlS~~~ 135 (376)
.. .+. +.|. ++-.|--|
T Consensus 88 ~~~eil~~MK~Ga-iL~f~hgf 108 (335)
T PRK13403 88 YKAEVEENLREGQ-MLLFSHGF 108 (335)
T ss_pred HHHHHHhcCCCCC-EEEECCCc
Confidence 43 222 3455 44466656
No 400
>PRK07340 ornithine cyclodeaminase; Validated
Probab=85.28 E-value=1.1 Score=43.60 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhc-CCCCCeEEEEEecCCCCC-ceeeec--CcceEEeecCc-cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAG-KQLSFQ--DKAYTVEELTE-DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~-~~~p~~~l~~v~s~~~~g-~~~~~~--~~~~~v~~~~~-~~~~~~DvVf~a~~~~~ 113 (376)
..+++|+|+ |..|+..++.+.. + +. +-+.+.+++... +.+... ...+.+...+. +.+.++|+|+.||++..
T Consensus 125 ~~~v~IiGa-G~qa~~~~~al~~~~--~~-~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 125 PGDLLLIGT-GVQARAHLEAFAAGL--PV-RRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhC--CC-CEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence 579999998 9999999998864 3 43 334455543211 111110 01122221122 23579999999999864
Q ss_pred hhhhHHHHHhCCCeEEEcCCCC
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.+.....+.|..|+-.+++.
T Consensus 201 --Pl~~~~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 201 --PVYPEAARAGRLVVAVGAFT 220 (304)
T ss_pred --ceeCccCCCCCEEEecCCCC
Confidence 22222346788777666653
No 401
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.27 E-value=2.2 Score=41.47 Aligned_cols=98 Identities=15% Similarity=0.249 Sum_probs=60.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|.|+|.+..+|+=|..+|.+++.. +..+....|+. +++ .+....+|+|+.|.|.--- +
T Consensus 157 GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------~nl------~~~~~~ADIvIsAvGkp~~--i 218 (293)
T PRK14185 157 GKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS----------KNL------KKECLEADIIIAALGQPEF--V 218 (293)
T ss_pred CCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC----------CCH------HHHHhhCCEEEEccCCcCc--c
Confidence 479999999999999999999875210 23444332211 011 1223689999999876432 2
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCC----CcEEeeccCHHhhcC
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMSG 155 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~----~~~~lpevN~~~i~~ 155 (376)
-....+.|+.|||.+-.+ ..+. -.-.+-.++.+.++.
T Consensus 219 ~~~~vk~gavVIDvGin~-~~~~~~~~g~klvGDVdf~~v~~ 259 (293)
T PRK14185 219 KADMVKEGAVVIDVGTTR-VPDATRKSGFKLTGDVKFDEVAP 259 (293)
T ss_pred CHHHcCCCCEEEEecCcc-cccccccCCCeeEcCCCHHHHHh
Confidence 234567899999988754 2220 113556677776653
No 402
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.24 E-value=2.3 Score=41.30 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=57.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....+.. +++ .+....+|+||.|.|.-.- .-
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~---~atVtv~hs~T----------~~l------~~~~~~ADIvv~AvG~p~~--i~ 222 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNR---NATVSVCHVFT----------DDL------KKYTLDADILVVATGVKHL--IK 222 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC---CCEEEEEeccC----------CCH------HHHHhhCCEEEEccCCccc--cC
Confidence 489999999999999999999875 34554333211 011 1224689999998765321 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
....+.|+.|||.+..+ . ++ -.+-.++.+.++
T Consensus 223 ~~~vk~gavVIDvGin~-~-~g--kl~GDvd~~~~~ 254 (287)
T PRK14176 223 ADMVKEGAVIFDVGITK-E-ED--KVYGDVDFENVI 254 (287)
T ss_pred HHHcCCCcEEEEecccc-c-CC--CccCCcCHHHHH
Confidence 33567899999998764 1 11 123445655554
No 403
>PLN02858 fructose-bisphosphate aldolase
Probab=85.15 E-value=1 Score=52.74 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=51.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISK- 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~- 115 (376)
..+||++|. |.+|..+.+.|...+| ++.+. +++. .-..+...+ .... .++.+ ..++|+||+|++.....
T Consensus 324 ~~~IGfIGl-G~MG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~~G--a~~~-~s~~e~~~~aDvVi~~V~~~~~v~ 395 (1378)
T PLN02858 324 VKRIGFIGL-GAMGFGMASHLLKSNF---SVCGY-DVYKPTLVRFENAG--GLAG-NSPAEVAKDVDVLVIMVANEVQAE 395 (1378)
T ss_pred CCeEEEECc-hHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHcC--Ceec-CCHHHHHhcCCEEEEecCChHHHH
Confidence 478999997 9999999999987644 55443 2221 111111111 1111 12333 36899999999965432
Q ss_pred hhH---H---HHHhCCCeEEEcCCC
Q 017153 116 KFG---P---IAVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~---~---~~~~~G~~VIDlS~~ 134 (376)
+.. . .....|..|||+|.-
T Consensus 396 ~Vl~g~~g~~~~l~~g~ivVd~STv 420 (1378)
T PLN02858 396 NVLFGDLGAVSALPAGASIVLSSTV 420 (1378)
T ss_pred HHHhchhhHHhcCCCCCEEEECCCC
Confidence 222 1 112467889999874
No 404
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.09 E-value=1.4 Score=45.17 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhh-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK-F 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~-~ 117 (376)
..+|+|+|+ |.+|+.+++.|... ..++.+. +.+. .+..........+..+ .+.+.++|+||.|++....-. .
T Consensus 212 Gk~VlViG~-G~IG~~vA~~lr~~---Ga~ViV~-d~dp-~ra~~A~~~G~~v~~l-~eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 212 GKVVVVAGY-GDVGKGCAQRLRGL---GARVIVT-EVDP-ICALQAAMDGFRVMTM-EEAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEE-cCCc-hhhHHHHhcCCEecCH-HHHHhCCCEEEECCCCHHHHHHH
Confidence 478999999 99999999999875 3355433 2221 1111100001112111 123468999999997643221 1
Q ss_pred HHHHHhCCCeEEEcCCCC
Q 017153 118 GPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~ 135 (376)
.-...+.|+.++.. +.|
T Consensus 285 ~~~~mK~GailiNv-G~~ 301 (425)
T PRK05476 285 HMEAMKDGAILANI-GHF 301 (425)
T ss_pred HHhcCCCCCEEEEc-CCC
Confidence 11223567777744 444
No 405
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.07 E-value=1.6 Score=40.04 Aligned_cols=31 Identities=10% Similarity=0.242 Sum_probs=25.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++.|.|+||.+|.++++.|.+++ .++..+.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~ 36 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG---ARVVVTD 36 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 689999999999999999998863 3555443
No 406
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=85.07 E-value=1.7 Score=39.54 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|+||++|+++++.|.+++ .+++.+.
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G---~~v~~~~ 36 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQG---ANVVINY 36 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 4689999999999999999998763 3554444
No 407
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.05 E-value=2 Score=43.82 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF- 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~- 117 (376)
..+|+|+|+ |.+|+.+++.+... ..++.++. .+. .+..........+... .+.+.++|+||+|++....-..
T Consensus 195 Gk~VvViG~-G~IG~~vA~~ak~~---Ga~ViV~d-~dp-~r~~~A~~~G~~v~~l-eeal~~aDVVItaTG~~~vI~~~ 267 (406)
T TIGR00936 195 GKTVVVAGY-GWCGKGIAMRARGM---GARVIVTE-VDP-IRALEAAMDGFRVMTM-EEAAKIGDIFITATGNKDVIRGE 267 (406)
T ss_pred cCEEEEECC-CHHHHHHHHHHhhC---cCEEEEEe-CCh-hhHHHHHhcCCEeCCH-HHHHhcCCEEEECCCCHHHHHHH
Confidence 479999999 99999999998865 34655432 211 1111000001122222 2235688999999986443221
Q ss_pred HHHHHhCCCeEEEcCCCC
Q 017153 118 GPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~ 135 (376)
.-...+.|+.++. .+.|
T Consensus 268 ~~~~mK~GailiN-~G~~ 284 (406)
T TIGR00936 268 HFENMKDGAIVAN-IGHF 284 (406)
T ss_pred HHhcCCCCcEEEE-ECCC
Confidence 1122356777764 4443
No 408
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=84.86 E-value=0.99 Score=40.07 Aligned_cols=88 Identities=19% Similarity=0.287 Sum_probs=46.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCch--hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI--SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~--s~~ 116 (376)
..++.|+|+ |.+|+-+.+.|... ...+... ..+. =+.+........+..+ .+.+..+|++|.||+... ..+
T Consensus 23 Gk~vvV~GY-G~vG~g~A~~lr~~---Ga~V~V~-e~DP-i~alqA~~dGf~v~~~-~~a~~~adi~vtaTG~~~vi~~e 95 (162)
T PF00670_consen 23 GKRVVVIGY-GKVGKGIARALRGL---GARVTVT-EIDP-IRALQAAMDGFEVMTL-EEALRDADIFVTATGNKDVITGE 95 (162)
T ss_dssp TSEEEEE---SHHHHHHHHHHHHT---T-EEEEE--SSH-HHHHHHHHTT-EEE-H-HHHTTT-SEEEE-SSSSSSB-HH
T ss_pred CCEEEEeCC-CcccHHHHHHHhhC---CCEEEEE-ECCh-HHHHHhhhcCcEecCH-HHHHhhCCEEEECCCCccccCHH
Confidence 378999999 99999999999875 3444322 2111 0111110111333332 234578999999998753 455
Q ss_pred hHHHHHhCCCeEEEcCCCC
Q 017153 117 FGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~ 135 (376)
..+++ +.|+.+.+.. .|
T Consensus 96 ~~~~m-kdgail~n~G-h~ 112 (162)
T PF00670_consen 96 HFRQM-KDGAILANAG-HF 112 (162)
T ss_dssp HHHHS--TTEEEEESS-SS
T ss_pred HHHHh-cCCeEEeccC-cC
Confidence 55553 5678887654 44
No 409
>PRK07411 hypothetical protein; Validated
Probab=84.85 E-value=3.4 Score=41.81 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=54.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.+++..|...+. -++..+- ..+..++.+-+ ....+.+..
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gv--g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~ 114 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGI--GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE 114 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC--CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence 479999999 8889999999987633 3444332 11222222111 011223321
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEE
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVD 130 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VID 130 (376)
++++ .+.++|+|++|++...++.+...+ .+.++..|.
T Consensus 115 ~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~ 158 (390)
T PRK07411 115 TRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVY 158 (390)
T ss_pred cccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 2221 247899999999998887777655 467777774
No 410
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=84.76 E-value=2.1 Score=40.66 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=40.5
Q ss_pred EEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCC--Cce--eee---cCcceEEeec-C-ccCCCCCcEEEEcCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSA--GKQ--LSF---QDKAYTVEEL-T-EDSFDGVDIALFSAGG 111 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~--g~~--~~~---~~~~~~v~~~-~-~~~~~~~DvVf~a~~~ 111 (376)
|+|+||.|.+|..++..|...+ +...++..+-..... +.. +.. ......+... | .+++.++|+|+++.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 6899999999999999887652 122566655322211 110 000 0012334322 2 3557899999998754
No 411
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.73 E-value=2.3 Score=41.52 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=58.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|.|+|.+..+|+=|..+|.+++. -+..+...-|+. +++ .+....+|+|+.|.|.-- -+
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------~~l------~~~~~~ADIvIsAvGkp~--~i 218 (297)
T PRK14167 157 GADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT----------DDL------AAKTRRADIVVAAAGVPE--LI 218 (297)
T ss_pred CCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC----------CCH------HHHHhhCCEEEEccCCcC--cc
Confidence 48999999999999999999986410 023443222211 011 122368999999986532 22
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCC---CcEEeeccCHHhhc
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVEN---VPLVIPEVNPEAMS 154 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~---~~~~lpevN~~~i~ 154 (376)
-+...+.|+.|||..-.+ .++. ..-.+-.++.+.++
T Consensus 219 ~~~~ik~gaiVIDvGin~-~~~~~~~g~kl~GDVd~e~v~ 257 (297)
T PRK14167 219 DGSMLSEGATVIDVGINR-VDADTEKGYELVGDVEFESAK 257 (297)
T ss_pred CHHHcCCCCEEEEccccc-cCcccccCCceeecCcHHHHH
Confidence 234567899999987554 2110 01245566666665
No 412
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.62 E-value=5 Score=40.98 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=51.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc---eeeecCcceEEe--ecCccCCCCCcEEEEcCCCchh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK---QLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~---~~~~~~~~~~v~--~~~~~~~~~~DvVf~a~~~~~s 114 (376)
.||.|+|. |-+|...++.|..++ ...++... +.+..-. .+. ..+.+. ..+++.+.++|+|+...+-...
T Consensus 8 ~~v~viG~-G~sG~s~~~~l~~~~-~~~~v~~~-D~~~~~~~~~~l~---~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~ 81 (438)
T PRK04663 8 KNVVVVGL-GITGLSVVKHLRKYQ-PQLTVKVI-DTRETPPGQEQLP---EDVELHSGGWNLEWLLEADLVVTNPGIALA 81 (438)
T ss_pred ceEEEEec-cHHHHHHHHHHHhcC-CCCeEEEE-eCCCCchhHHHhh---cCCEEEeCCCChHHhccCCEEEECCCCCCC
Confidence 68999999 999999999888751 12555432 2221110 111 123332 2344456788988887655545
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.....++.++|++|+
T Consensus 82 ~p~~~~a~~~gi~i~ 96 (438)
T PRK04663 82 TPEIQQVLAAGIPVV 96 (438)
T ss_pred CHHHHHHHHCCCcEE
Confidence 556667778899988
No 413
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=84.53 E-value=1.8 Score=41.77 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
+.++|.|.|++|++|+.|++.|.++++ ++.++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~---~V~~~ 35 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY---TINAT 35 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC---EEEEE
Confidence 347999999999999999999988643 55443
No 414
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=84.52 E-value=2 Score=41.53 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=25.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..||+|+||.|-+|+-|--+|... |.+.-.++.
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~n--p~Vs~LaLY 60 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLKLN--PLVSELALY 60 (345)
T ss_pred cceEEEEecCCccCccHHHHHhcC--cccceeeee
Confidence 589999999999999987777655 665544443
No 415
>PRK14851 hypothetical protein; Provisional
Probab=84.52 E-value=6.3 Score=42.87 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCC-----------Cceeee--------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSA-----------GKQLSF--------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~-----------g~~~~~--------~~~~~~v~--- 92 (376)
..||+|+|+ |-+|..++..|...+. -++..+- ..++. |+.-.. -...+.++
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~GV--G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRTGI--GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP 119 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHhCC--CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 479999998 8899999999987633 3444331 11112 221100 01122222
Q ss_pred -ecCccC----CCCCcEEEEcCCCch--hh-hhHHHHHhCCCeEEEcC
Q 017153 93 -ELTEDS----FDGVDIALFSAGGSI--SK-KFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 93 -~~~~~~----~~~~DvVf~a~~~~~--s~-~~~~~~~~~G~~VIDlS 132 (376)
.++++. +.++|+|++|++... ++ .+.....+.|+.+|+.+
T Consensus 120 ~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 120 AGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred cCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 222222 478999999998642 33 23345567888888754
No 416
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.45 E-value=7.4 Score=36.52 Aligned_cols=94 Identities=20% Similarity=0.181 Sum_probs=55.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCC-----------CCceeee--------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRS-----------AGKQLSF--------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~-----------~g~~~~~--------~~~~~~v~~-- 93 (376)
..||.|+|. |-+|.++++.|...+ .-++..+-. .+. .|+.-.. -...+.+..
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~G--Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSG--VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 478999999 999999999998873 335554421 111 1221100 011223322
Q ss_pred --cCcc---C-C-CCCcEEEEcCCCchhhhhHH-HHHhCCCeEEEcCCCC
Q 017153 94 --LTED---S-F-DGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNSSAF 135 (376)
Q Consensus 94 --~~~~---~-~-~~~DvVf~a~~~~~s~~~~~-~~~~~G~~VIDlS~~~ 135 (376)
++++ . + .+.|+|++|.+...++.... .+.+.++++|...+..
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 1211 1 2 36899999998876655444 4457789988765543
No 417
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=84.39 E-value=1.8 Score=42.50 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=25.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|.|.|+||++|..+++.|.+++ .++.++.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G---~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG---AEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC---CEEEEEe
Confidence 789999999999999999998864 3565543
No 418
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.36 E-value=1.8 Score=39.53 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.||||.+|+.+++.|.++ ..++.++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~---g~~V~~~~ 37 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE---GYKVAITA 37 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC---CCEEEEee
Confidence 478999999999999999999876 34665553
No 419
>PRK12828 short chain dehydrogenase; Provisional
Probab=84.28 E-value=1.9 Score=39.10 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=25.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.|+||.+|+.+++.|.+++ .++..+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G---~~v~~~~ 38 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARG---ARVALIG 38 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCC---CeEEEEe
Confidence 4689999999999999999998863 3555443
No 420
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=84.25 E-value=1.8 Score=42.85 Aligned_cols=83 Identities=16% Similarity=0.303 Sum_probs=45.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecC-ccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~-~~~~~~~DvVf~a~~~~~s~~ 116 (376)
..+|+|+|+ |.+|+.+++.|.. |......+.+... ..... ..-....+ ++.+.++|+++.|+|-+....
T Consensus 162 gK~vgilG~-G~IG~~ia~rL~~-----Fg~~i~y~~r~~~~~~~~~---~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~ 232 (336)
T KOG0069|consen 162 GKTVGILGL-GRIGKAIAKRLKP-----FGCVILYHSRTQLPPEEAY---EYYAEFVDIEELLANSDVIVVNCPLTKETR 232 (336)
T ss_pred CCEEEEecC-cHHHHHHHHhhhh-----ccceeeeecccCCchhhHH---HhcccccCHHHHHhhCCEEEEecCCCHHHH
Confidence 489999999 9999999999964 2222223322211 11100 00001122 233578999999988765422
Q ss_pred -hHH-HH---HhCCCeEEE
Q 017153 117 -FGP-IA---VEKGSIVVD 130 (376)
Q Consensus 117 -~~~-~~---~~~G~~VID 130 (376)
... ++ .+.|+.+|-
T Consensus 233 ~liNk~~~~~mk~g~vlVN 251 (336)
T KOG0069|consen 233 HLINKKFIEKMKDGAVLVN 251 (336)
T ss_pred HHhhHHHHHhcCCCeEEEe
Confidence 222 11 245666663
No 421
>PRK06487 glycerate dehydrogenase; Provisional
Probab=84.15 E-value=1.7 Score=42.69 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=39.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+++.++|..- ..++.+.. +. ++.. . ....+.+ .+..+|+|++++|-+.
T Consensus 148 gktvgIiG~-G~IG~~vA~~l~~f---gm~V~~~~-~~--~~~~-----~--~~~~~l~ell~~sDiv~l~lPlt~ 209 (317)
T PRK06487 148 GKTLGLLGH-GELGGAVARLAEAF---GMRVLIGQ-LP--GRPA-----R--PDRLPLDELLPQVDALTLHCPLTE 209 (317)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhC---CCEEEEEC-CC--CCcc-----c--ccccCHHHHHHhCCEEEECCCCCh
Confidence 479999998 99999999999753 45665443 22 1110 0 1111223 3578999999999754
No 422
>PLN02858 fructose-bisphosphate aldolase
Probab=84.15 E-value=1 Score=52.67 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=53.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~~ 116 (376)
..|||+||- |..|..+.+.|..++| ++.+. .++. .-..+...+ ..+.+ ++.++ .++|+||.|++.....+
T Consensus 4 ~~~IGfIGL-G~MG~~mA~~L~~~G~---~v~v~-dr~~~~~~~l~~~G--a~~~~-s~~e~a~~advVi~~l~~~~~v~ 75 (1378)
T PLN02858 4 AGVVGFVGL-DSLSFELASSLLRSGF---KVQAF-EISTPLMEKFCELG--GHRCD-SPAEAAKDAAALVVVLSHPDQVD 75 (1378)
T ss_pred CCeEEEEch-hHHHHHHHHHHHHCCC---eEEEE-cCCHHHHHHHHHcC--CeecC-CHHHHHhcCCEEEEEcCChHHHH
Confidence 368999997 9999999999988644 55543 3321 111111111 11221 23333 67999999999876544
Q ss_pred hH----HHHH---hCCCeEEEcCCCC
Q 017153 117 FG----PIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~----~~~~---~~G~~VIDlS~~~ 135 (376)
.+ ..++ ..|..|||.|.-.
T Consensus 76 ~V~~g~~g~~~~l~~g~iivd~STi~ 101 (1378)
T PLN02858 76 DVFFGDEGAAKGLQKGAVILIRSTIL 101 (1378)
T ss_pred HHHhchhhHHhcCCCcCEEEECCCCC
Confidence 33 1122 3577899998653
No 423
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=84.01 E-value=1.9 Score=39.95 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=30.2
Q ss_pred ceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 27 ~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
||+.-.|++ +..+|.|.|++|.+|+.+.+.|.+++ .+++.+
T Consensus 1 ~~~~~~~~l--~~k~vlVtG~s~gIG~~la~~l~~~G---~~vv~~ 41 (255)
T PRK06113 1 MFNSDNLRL--DGKCAIITGAGAGIGKEIAITFATAG---ASVVVS 41 (255)
T ss_pred CCCccccCc--CCCEEEEECCCchHHHHHHHHHHHCC---CeEEEE
Confidence 555544443 34899999999999999999999873 355544
No 424
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.00 E-value=2.9 Score=43.88 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=23.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
..||.|+|+ |-+|...++.+... . .++.++
T Consensus 165 g~kVlViGa-G~iGL~Ai~~Ak~l--G-A~V~a~ 194 (509)
T PRK09424 165 PAKVLVIGA-GVAGLAAIGAAGSL--G-AIVRAF 194 (509)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHC--C-CEEEEE
Confidence 479999999 99999999988776 3 255444
No 425
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=84.00 E-value=1.9 Score=44.66 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=48.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCch--hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI--SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~--s~~ 116 (376)
..+|+|+|+ |.+|+.+++.|... ..++.+...... +..........+..+ .+.+..+|+|+.|++..- ..+
T Consensus 254 GKtVgVIG~-G~IGr~vA~rL~a~---Ga~ViV~e~dp~--~a~~A~~~G~~~~~l-eell~~ADIVI~atGt~~iI~~e 326 (476)
T PTZ00075 254 GKTVVVCGY-GDVGKGCAQALRGF---GARVVVTEIDPI--CALQAAMEGYQVVTL-EDVVETADIFVTATGNKDIITLE 326 (476)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEeCCch--hHHHHHhcCceeccH-HHHHhcCCEEEECCCcccccCHH
Confidence 479999999 99999999999875 335544322111 110000001111111 123578999999987522 222
Q ss_pred hHHHHHhCCCeEEEcC
Q 017153 117 FGPIAVEKGSIVVDNS 132 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS 132 (376)
... ..+.|+.+|+.+
T Consensus 327 ~~~-~MKpGAiLINvG 341 (476)
T PTZ00075 327 HMR-RMKNNAIVGNIG 341 (476)
T ss_pred HHh-ccCCCcEEEEcC
Confidence 222 235688888654
No 426
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=84.00 E-value=1.5 Score=42.79 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|.|.||||++|+.|++.|.+.+ .+++++.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~ 31 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG---YEVHGLI 31 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 479999999999999999998863 3666554
No 427
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=83.97 E-value=1 Score=48.49 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD 63 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~ 63 (376)
++|||.|.|+||++|+.|.+.|.+++
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g 404 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG 404 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC
Confidence 46899999999999999999998763
No 428
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=83.94 E-value=1.5 Score=42.78 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=26.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|+||++|+.|++.|.++ ..++.++.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~---G~~V~~~~ 37 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSK---GYEVHGII 37 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEEe
Confidence 478999999999999999999886 34666554
No 429
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.89 E-value=2.4 Score=36.16 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=45.3
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCceeeecCcceEEe---ecCc--cCCCCCcEEEEcCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQLSFQDKAYTVE---ELTE--DSFDGVDIALFSAG 110 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~~~~~~~~~~~v~---~~~~--~~~~~~DvVf~a~~ 110 (376)
|+|+|+ |-+|.-+.-.|.+. ..++..+..+.. .|-.+.....+..+. .... .....+|+||.|+.
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~---g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQA---GHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHT---TCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHC---CCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 789999 99999999999764 346666654331 121222111111111 1111 12367899999999
Q ss_pred CchhhhhHHHHH
Q 017153 111 GSISKKFGPIAV 122 (376)
Q Consensus 111 ~~~s~~~~~~~~ 122 (376)
+....+..+.+.
T Consensus 77 a~~~~~~l~~l~ 88 (151)
T PF02558_consen 77 AYQLEQALQSLK 88 (151)
T ss_dssp GGGHHHHHHHHC
T ss_pred ccchHHHHHHHh
Confidence 988877666643
No 430
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=83.77 E-value=1 Score=44.50 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=40.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-Ccc-CCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TED-SFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~~~-~~~~~DvVf~a~~~~~ 113 (376)
.++|||+|+ |.+|+.+.+.|..- .+++.+....... .... ...+... +.+ -+..+|++.+.+|-+-
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~af---gm~v~~~d~~~~~--~~~~---~~~~~~~~~Ld~lL~~sDiv~lh~PlT~ 209 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAF---GMKVIGYDPYSPR--ERAG---VDGVVGVDSLDELLAEADILTLHLPLTP 209 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCeEEEECCCCch--hhhc---cccceecccHHHHHhhCCEEEEcCCCCc
Confidence 479999998 99999999999764 4566654321111 1100 0111211 122 3578999999988754
No 431
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=83.74 E-value=4.3 Score=41.06 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=54.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~--- 92 (376)
..||.|+|+ |-+|.+++..|...+.. ++..+- ..+..++.+-+ ....+.+.
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 118 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAAAGVG--TLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE 118 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHcCCC--eEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence 579999999 88999999999876433 444332 11222221110 01123332
Q ss_pred -ecCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 93 -ELTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 93 -~~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
.++.+ .+.++|+|++|+....++.+..++ .+.|+..|..+
T Consensus 119 ~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 119 FRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred ccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 22221 246899999999998877766654 56777777543
No 432
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=83.67 E-value=7.2 Score=42.56 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=80.6
Q ss_pred CCEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecC-CCCCce-------ee----ec----------CcceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASK-RSAGKQ-------LS----FQ----------DKAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~-~~~g~~-------~~----~~----------~~~~~v~~~~ 95 (376)
..||+|+|+ |..|..+...++ .+ .++++.+-.. +...+. +. .+ ...+... .+
T Consensus 304 i~~v~ViGa-G~mG~~iA~~~a~~~---G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~ 378 (699)
T TIGR02440 304 IKKVGILGG-GLMGGGIASVTATKA---GIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TD 378 (699)
T ss_pred ccEEEEECC-cHHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CC
Confidence 468999999 999999998887 34 3455544211 111110 00 00 0112222 23
Q ss_pred ccCCCCCcEEEEcCCCchhhhh--HH---HHHhCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCC
Q 017153 96 EDSFDGVDIALFSAGGSISKKF--GP---IAVEKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGK 162 (376)
Q Consensus 96 ~~~~~~~DvVf~a~~~~~s~~~--~~---~~~~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~ 162 (376)
.+.+.++|+|+.|.+-....+. .. ++...++.+-.+||.+...+ +--.++=-+|+..+.+ -
T Consensus 379 ~~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~------l 452 (699)
T TIGR02440 379 YRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMP------L 452 (699)
T ss_pred hHHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCc------e
Confidence 3457899999999988765332 22 23346788889999886432 1124555556554432 2
Q ss_pred CcEEEcCCchHHHHHHHHhHHHHhCCCcEEEE
Q 017153 163 GALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (376)
Q Consensus 163 ~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v 194 (376)
..+|..+.+....+..+.. +.+..+-..|.+
T Consensus 453 VEvv~g~~T~~~~~~~~~~-~~~~~gk~pv~v 483 (699)
T TIGR02440 453 VEVIPHAGTSEQTIATTVA-LAKKQGKTPIVV 483 (699)
T ss_pred EEEeCCCCCCHHHHHHHHH-HHHHcCCeEEEE
Confidence 4477777766655555443 444444344444
No 433
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=83.54 E-value=2.1 Score=41.86 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=40.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+++.+++.. | ..++.+. ++.. +... ..+...++ .+.+..+|+|.+++|.+.
T Consensus 145 gktvGIiG~-G~IG~~vA~~~~~--f-gm~V~~~-d~~~--~~~~---~~~~~~~l-~ell~~sDvv~lh~Plt~ 208 (311)
T PRK08410 145 GKKWGIIGL-GTIGKRVAKIAQA--F-GAKVVYY-STSG--KNKN---EEYERVSL-EELLKTSDIISIHAPLNE 208 (311)
T ss_pred CCEEEEECC-CHHHHHHHHHHhh--c-CCEEEEE-CCCc--cccc---cCceeecH-HHHhhcCCEEEEeCCCCc
Confidence 489999998 9999999999864 3 4566544 3321 1100 11112121 223578999999998654
No 434
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=83.46 E-value=2.3 Score=42.18 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=59.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|-+..+|+=|.-+|.++ +..+...-++. +++ .+....+|||+.|.|.-.- +-
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~---~ATVTicHs~T----------~nl------~~~~~~ADIvIsAvGkp~~--v~ 272 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRH---DATVSTVHAFT----------KDP------EQITRKADIVIAAAGIPNL--VR 272 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHC---CCEEEEEcCCC----------CCH------HHHHhhCCEEEEccCCcCc--cC
Confidence 479999999999999999988875 34554333321 011 1223689999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCC----CcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~----~~~~lpevN~~~i~ 154 (376)
....+.|+.|||..-.+ .++. -.-.+-.++.+...
T Consensus 273 ~d~vk~GavVIDVGin~-~~~~~~~~g~klvGDVdfe~v~ 311 (345)
T PLN02897 273 GSWLKPGAVVIDVGTTP-VEDSSCEFGYRLVGDVCYEEAL 311 (345)
T ss_pred HHHcCCCCEEEEccccc-cccccccCCCeeEecccHHHHH
Confidence 34567899999988654 2210 11345556655554
No 435
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=83.21 E-value=4.2 Score=46.18 Aligned_cols=109 Identities=15% Similarity=0.283 Sum_probs=66.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC---CCeEEEEEe----cCCCCCceeee-------------------cCcceEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF---PYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVE 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~---p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~ 92 (376)
..||.|+|+ |-+|.++++.|...+. +.-++..+- ..+..++.+-+ ...++.+.
T Consensus 419 ~~kVlvvGa-GGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~ 497 (1008)
T TIGR01408 419 NLNIFLVGC-GAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKID 497 (1008)
T ss_pred hCcEEEECC-ChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 479999999 9999999999886533 113555442 11222222111 01122222
Q ss_pred ----ecCc--------cCCCCCcEEEEcCCCchhhhhHHH-HHhCCCeEEEcCCCCCCCCCCcEEeeccC
Q 017153 93 ----ELTE--------DSFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNSSAFRMVENVPLVIPEVN 149 (376)
Q Consensus 93 ----~~~~--------~~~~~~DvVf~a~~~~~s~~~~~~-~~~~G~~VIDlS~~~R~~~~~~~~lpevN 149 (376)
.+++ +-|.+.|+|+.|++...++.+... ....++..|+ ++.+-+...+...+|++.
T Consensus 498 ~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~-~gt~G~~G~v~v~ip~~t 566 (1008)
T TIGR01408 498 AHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLE-SGTLGTKGNTQVVVPHLT 566 (1008)
T ss_pred EEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE-EeccCceeeEEEEeCCCc
Confidence 1211 124689999999999888777764 4578889998 455555555556677753
No 436
>PTZ00188 adrenodoxin reductase; Provisional
Probab=83.10 E-value=3.6 Score=42.96 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=22.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
+.||+|||+ |-.|....+.|+.+ ...++..+
T Consensus 39 ~krVAIVGa-GPAGlyaA~~Ll~~--~g~~Vtlf 69 (506)
T PTZ00188 39 PFKVGIIGA-GPSALYCCKHLLKH--ERVKVDIF 69 (506)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHh--cCCeEEEE
Confidence 479999998 99999998865533 23445444
No 437
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.06 E-value=2.2 Score=44.70 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=33.8
Q ss_pred CCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCcee
Q 017153 35 YQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL 82 (376)
Q Consensus 35 ~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~ 82 (376)
..+++.+|.|||| |..|...+|.|.+. .+++.++-+++-.|-++
T Consensus 11 ~~~~~~~VIVIGA-GiaGLsAArqL~~~---G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 11 EAGKKKKVIVIGA-GLAGLSAARQLQDF---GFDVLVLEARDRVGGRI 54 (501)
T ss_pred cccCCCcEEEECC-cHHHHHHHHHHHHc---CCceEEEeccCCcCcee
Confidence 3455689999999 99999999999986 45677776666555333
No 438
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.02 E-value=4.5 Score=41.76 Aligned_cols=89 Identities=15% Similarity=0.224 Sum_probs=51.5
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-eeeecCcceEE-eecCccCCCCCcEEEEcCC
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTV-EELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-~~~~~~~~~~v-~~~~~~~~~~~DvVf~a~~ 110 (376)
|+.+. ..||+|+|. |..|...++.|.. ..++.+ .+.+.... ..... .+..+ .....+.+.++|+|+..-+
T Consensus 1 ~~~~~-~~~v~v~G~-G~sG~a~~~~L~~----g~~v~v-~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~vV~SPg 72 (454)
T PRK01368 1 MNSHT-KQKIGVFGL-GKTGISVYEELQN----KYDVIV-YDDLKANRDIFEEL-YSKNAIAALSDSRWQNLDKIVLSPG 72 (454)
T ss_pred CcCCC-CCEEEEEee-cHHHHHHHHHHhC----CCEEEE-ECCCCCchHHHHhh-hcCceeccCChhHhhCCCEEEECCC
Confidence 34444 368999998 9999999999983 235543 33221110 00000 01111 1212233567898888765
Q ss_pred CchhhhhHHHHHhCCCeEE
Q 017153 111 GSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VI 129 (376)
-.........+.+.|++|+
T Consensus 73 I~~~~p~~~~a~~~gi~v~ 91 (454)
T PRK01368 73 IPLTHEIVKIAKNFNIPIT 91 (454)
T ss_pred CCCCCHHHHHHHHCCCcee
Confidence 5555556667778899986
No 439
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=82.82 E-value=2.3 Score=41.09 Aligned_cols=91 Identities=18% Similarity=0.064 Sum_probs=50.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-------CC--CCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-------SF--DGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-------~~--~~~DvVf~a~ 109 (376)
.-+|.|.|++|-+|..+++++... ..++..+.+....-......+.+..+...+.+ .. .++|++|+|+
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~---G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLK---GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 468999999999999999887765 34655444321110011001111111110100 11 3689999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
+....... -.++..|.++|..+.
T Consensus 216 G~~~~~~~-~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 216 GGEFSNTV-IGQMKKFGRIAICGA 238 (325)
T ss_pred CHHHHHHH-HHHhCcCcEEEEecc
Confidence 87655333 344566777776653
No 440
>PRK08628 short chain dehydrogenase; Provisional
Probab=82.75 E-value=2.1 Score=39.68 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=26.1
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
++..++.|.||||.+|+.+++.|.+++ .+++.+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G---~~v~~~ 37 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEG---AIPVIF 37 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcC---CcEEEE
Confidence 334689999999999999999999863 355444
No 441
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.69 E-value=2.5 Score=43.64 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=45.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-C---CCeEEEEEecCCCCCceeee----------cCcceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-F---PYRSIKMLASKRSAGKQLSF----------QDKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-~---p~~~l~~v~s~~~~g~~~~~----------~~~~~~v~~~~~~~~~~~Dv 104 (376)
++||+|-||+|.+|-.|+-.|+.-+ | ..+.|+.+--+....+.... ....+.+..-+.+++.++|+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~daDv 202 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHV 202 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCCCE
Confidence 5899999999999999999887621 1 23555555322122111110 01234444434566899999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
||.+.+.
T Consensus 203 vIitag~ 209 (452)
T cd05295 203 IVLLDDF 209 (452)
T ss_pred EEECCCC
Confidence 9998765
No 442
>PRK06199 ornithine cyclodeaminase; Validated
Probab=82.61 E-value=2.2 Score=43.07 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=44.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceee----ecCcce-EEeec-C-ccCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS----FQDKAY-TVEEL-T-EDSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~----~~~~~~-~v~~~-~-~~~~~~~DvVf~a~~ 110 (376)
..+++|+|+ |.-++.-++.+..- +|.++-+.+.+++... ..+. .....+ .+... + .+...++|||++||+
T Consensus 155 a~~l~iiG~-G~QA~~~l~a~~~v-~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~ 232 (379)
T PRK06199 155 SKVVGLLGP-GVMGKTILAAFMAV-CPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNS 232 (379)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHh-cCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccC
Confidence 579999997 99999999988762 2656666676654321 1111 010011 13222 2 233578999999997
Q ss_pred Cch
Q 017153 111 GSI 113 (376)
Q Consensus 111 ~~~ 113 (376)
...
T Consensus 233 s~~ 235 (379)
T PRK06199 233 GET 235 (379)
T ss_pred CCC
Confidence 643
No 443
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=82.58 E-value=2.6 Score=42.09 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|-+..+|+=|..+|.++ +..+...-|+. +++ .+....+|||+.|.|.-.- +-
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~---~ATVTicHs~T----------~nl------~~~~r~ADIVIsAvGkp~~--i~ 289 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQRE---DATVSIVHSRT----------KNP------EEITREADIIISAVGQPNM--VR 289 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHC---CCeEEEeCCCC----------CCH------HHHHhhCCEEEEcCCCcCc--CC
Confidence 478999999999999999888875 34544333221 011 1223689999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCC----CcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~----~~~~lpevN~~~i~ 154 (376)
....+.|+.|||..=.+ .+++ -.-.+-.++.+...
T Consensus 290 ~d~vK~GAvVIDVGIn~-~~~~~~~~g~klvGDVdfe~v~ 328 (364)
T PLN02616 290 GSWIKPGAVVIDVGINP-VEDASSPRGYRLVGDVCYEEAC 328 (364)
T ss_pred HHHcCCCCEEEeccccc-cccccccCCCeEEecCcHHHHH
Confidence 34567899999987554 2221 11345666766555
No 444
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=82.47 E-value=2.4 Score=42.63 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=51.4
Q ss_pred EECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCCceee----ec-------C-------------cceEEe-ecC--
Q 017153 44 VVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLS----FQ-------D-------------KAYTVE-ELT-- 95 (376)
Q Consensus 44 IvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g~~~~----~~-------~-------------~~~~v~-~~~-- 95 (376)
|+|+||-+|.+.++.+..+ |+ +++++++..+....... +. . .+..+. ..+
T Consensus 1 ILGsTGSIG~qtLdVi~~~--~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l 78 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAH--PEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGL 78 (383)
T ss_pred CCccccHHHHHHHHHHHhC--ccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHH
Confidence 6899999999999999876 54 99998876544332111 00 0 001111 100
Q ss_pred --ccCCCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 96 --EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 96 --~~~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
.....++|+|+.|.-....-.-.-.++++|.++-
T Consensus 79 ~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~ia 114 (383)
T PRK12464 79 IAVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIA 114 (383)
T ss_pred HHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEE
Confidence 0112468999999877666555556678886643
No 445
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=82.47 E-value=2.2 Score=41.28 Aligned_cols=67 Identities=21% Similarity=0.379 Sum_probs=39.4
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cceee--e----cCcceEEee-cCccCCCCCcEEEEcCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLS--F----QDKAYTVEE-LTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~--~----~~~~~~v~~-~~~~~~~~~DvVf~a~~~ 111 (376)
|+|+|| |++|..+...|..+++ . +++++--.... |.... . ......+.. .+.+++.++|+||.|.+.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l-~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKEL-G-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCC-c-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCC
Confidence 689999 9999999998887532 2 77665322111 11110 0 111123332 234457899999998753
No 446
>PRK14852 hypothetical protein; Provisional
Probab=82.41 E-value=5 Score=45.14 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCC-----------CCceeee--------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRS-----------AGKQLSF--------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~-----------~g~~~~~--------~~~~~~v~--- 92 (376)
..||+|+|. |-+|.+++..|...+. -++..+- ..++ .|+.-.. -...+.++
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGV--G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~ 408 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGI--GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP 408 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCC--CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence 479999999 8889999999987633 3444331 1111 2221110 01122332
Q ss_pred -ecCcc---C-CCCCcEEEEcCCCchh---hhhHHHHHhCCCeEEEcCC
Q 017153 93 -ELTED---S-FDGVDIALFSAGGSIS---KKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 93 -~~~~~---~-~~~~DvVf~a~~~~~s---~~~~~~~~~~G~~VIDlS~ 133 (376)
.++.+ + +.++|+|++|++.... ......+.+.|+.+|..+.
T Consensus 409 ~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 409 EGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred cCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 22222 2 4799999999987433 3444556788999997554
No 447
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=82.37 E-value=0.65 Score=45.49 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=44.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cCcceEEeec-Cc-cCCCCCcEEEEcCCCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEEL-TE-DSFDGVDIALFSAGGS 112 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~ 112 (376)
+..+++|+|+ |..++.-++.+... +| ++-+.+.+++... +.+.. ....+.+... +. +...++|||++||++.
T Consensus 127 ~~~~l~viGa-G~QA~~~~~a~~~~-~~-i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 127 DARTLGVIGA-GVQARWHLRALAAV-RP-IKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPST 203 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHH-S---SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----S
T ss_pred CCceEEEECC-CHHHHHHHHHHHHh-CC-ceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCC
Confidence 3579999998 99999999987653 36 5555566654321 11110 0012333322 22 3458999999999987
Q ss_pred hhhh-hHHHHHhCCCeEEEcCCC
Q 017153 113 ISKK-FGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 113 ~s~~-~~~~~~~~G~~VIDlS~~ 134 (376)
.... +-...++.|..|+-.+++
T Consensus 204 ~~~P~~~~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 204 TPAPVFDAEWLKPGTHINAIGSY 226 (313)
T ss_dssp SEEESB-GGGS-TT-EEEE-S-S
T ss_pred CCCccccHHHcCCCcEEEEecCC
Confidence 6211 222345678888877765
No 448
>PRK07060 short chain dehydrogenase; Provisional
Probab=82.31 E-value=2.6 Score=38.51 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..++.|.|++|.+|+.+++.|.+++ .++..+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g---~~V~~~~ 40 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRG---ARVVAAA 40 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCC---CEEEEEe
Confidence 4789999999999999999998873 3655443
No 449
>PRK07589 ornithine cyclodeaminase; Validated
Probab=82.26 E-value=2.8 Score=41.76 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=52.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cCcceEEeec-Cc-cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEEL-TE-DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~~ 113 (376)
..+++|+|+ |..++.-++.+..- +|.-++. +.+++... +.+.. ....+.+... +. +...++|||++||++..
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~v-r~i~~V~-v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~ 205 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKAL-LGIEEIR-LYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT 205 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHh-CCceEEE-EEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 578999998 99999998876643 2544444 44443221 11110 0011223211 22 33578999999998643
Q ss_pred hhh-hHHHHHhCCCeEEEcCCC
Q 017153 114 SKK-FGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 114 s~~-~~~~~~~~G~~VIDlS~~ 134 (376)
... +-.+.++.|+.|+-..++
T Consensus 206 ~~Pvl~~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 206 NATILTDDMVEPGMHINAVGGD 227 (346)
T ss_pred CCceecHHHcCCCcEEEecCCC
Confidence 212 223456789987765554
No 450
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=82.21 E-value=2.2 Score=42.59 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=30.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKR 76 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~ 76 (376)
+|+.|+|+||-+|.+-++.+.++ |+ |++++++.-+
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~--p~~f~vval~ag~ 37 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRN--PDKFEVVALAAGK 37 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhC--CCcEEEEEEecCC
Confidence 78999999999999999999987 65 7898886543
No 451
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=82.16 E-value=1.8 Score=41.83 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=25.3
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+|.|.||||++|+.|++.|.++++ ..++.++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~-~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRST-QAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCC-CCEEEEEE
Confidence 478999999999999999987632 24666664
No 452
>PLN02686 cinnamoyl-CoA reductase
Probab=81.94 E-value=2.2 Score=42.47 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=26.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.++|.|.|+||++|+.|++.|.+++ .++.++.
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G---~~V~~~~ 84 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHG---YSVRIAV 84 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEe
Confidence 35799999999999999999998864 3665543
No 453
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=81.83 E-value=2.3 Score=40.01 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=31.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~ 75 (376)
+||.+.|.||++|..+.+.+.+.++++-+.+.+.|.
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk 37 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK 37 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc
Confidence 789999999999999999999988877888877654
No 454
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=81.58 E-value=5.1 Score=38.70 Aligned_cols=109 Identities=21% Similarity=0.343 Sum_probs=66.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC--chhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG--SISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~--~~s~~ 116 (376)
..++.|+|.+..+|+=+..+|++. +..+....|.. +++ .+....+|+++.|.|. ....+
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~---naTVtvcHs~T----------~~l------~~~~k~ADIvv~AvG~p~~i~~d 216 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNA---NATVTVCHSRT----------KDL------ASITKNADIVVVAVGKPHFIKAD 216 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhC---CCEEEEEcCCC----------CCH------HHHhhhCCEEEEecCCccccccc
Confidence 479999999999999999988873 44554333211 011 1223688999999864 33334
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC---CchHHHHHH
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP---NCSTIICLM 178 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P---gC~~ta~~l 178 (376)
| .+.|+.|||..-. |.++ -=.+-.++.+..+.. ...+--.| |-.|+++++
T Consensus 217 ~----vk~gavVIDVGin-rv~~--~kl~GDVdf~~v~~~-----a~~iTPVPGGVGPmTvamLl 269 (283)
T COG0190 217 M----VKPGAVVIDVGIN-RVND--GKLVGDVDFDSVKEK-----ASAITPVPGGVGPMTVAMLL 269 (283)
T ss_pred c----ccCCCEEEecCCc-cccC--CceEeeccHHHHHHh-----hcccCCCCCccCHHHHHHHH
Confidence 3 4579999998764 3332 123455676665531 22344566 455555554
No 455
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.45 E-value=20 Score=39.29 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCc-----------eeeec----------CcceEEeecCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGK-----------QLSFQ----------DKAYTVEELTE 96 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~-----------~~~~~----------~~~~~v~~~~~ 96 (376)
..||+|+|| |..|..+...++.++ ++++++-... ...+ .+..+ ...+... .+.
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 387 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKG---VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY 387 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH
Confidence 358999999 999999999998864 4555443211 1100 00000 0112222 233
Q ss_pred cCCCCCcEEEEcCCCchhhhh--HH---HHHhCCCeEEEcCCCCCC
Q 017153 97 DSFDGVDIALFSAGGSISKKF--GP---IAVEKGSIVVDNSSAFRM 137 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~~~--~~---~~~~~G~~VIDlS~~~R~ 137 (376)
+.+.++|+||.|.+-....+. .. ++...++.+-.+||.+..
T Consensus 388 ~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i 433 (715)
T PRK11730 388 AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISI 433 (715)
T ss_pred HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 457899999999987665332 22 334567889999999864
No 456
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=81.40 E-value=6.2 Score=38.54 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=49.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecCccC----CCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTEDS----FDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~~~~----~~~~DvVf~a~~~~ 112 (376)
.-+|.|+|+ |-+|...++++...+ .-++.++..+...-+.....+.+..+. +.+..+ ..++|+||+|++..
T Consensus 170 g~~VlV~G~-G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~ 246 (343)
T PRK09880 170 GKRVFVSGV-GPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP 246 (343)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH
Confidence 368999997 999999998877652 223443332211000000011111111 101111 12489999999975
Q ss_pred hhhhhHHHHHhCCCeEEEcC
Q 017153 113 ISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS 132 (376)
.+.+.+-+++..|.++|..+
T Consensus 247 ~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 247 SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred HHHHHHHHHhhcCCEEEEEc
Confidence 54444555667777877665
No 457
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=81.39 E-value=2.6 Score=40.85 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=23.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
..+||.|.||.||||..|.+.|...+|
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh 52 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGH 52 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCC
Confidence 359999999999999999999887644
No 458
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.36 E-value=6.5 Score=42.29 Aligned_cols=38 Identities=8% Similarity=0.144 Sum_probs=27.9
Q ss_pred CCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCCC
Q 017153 100 DGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVE 139 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~~ 139 (376)
.++|+||+|++...++-+...+ ...|..+|.. +..++.
T Consensus 447 ~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~a--AlGfdg 485 (664)
T TIGR01381 447 KDHDVVFLLLDSREARWLPTVLCSRHKKIAISA--ALGFDS 485 (664)
T ss_pred hhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEE--Eeccce
Confidence 6899999999999997655544 4567888864 355543
No 459
>PRK05875 short chain dehydrogenase; Provisional
Probab=81.35 E-value=3.2 Score=38.96 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=26.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+..++-|.|++|.+|+.+.+.|.++++ ++..+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~---~V~~~~ 38 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA---AVMIVG 38 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEe
Confidence 347999999999999999999988633 665443
No 460
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=81.24 E-value=6.5 Score=36.02 Aligned_cols=90 Identities=13% Similarity=0.247 Sum_probs=53.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC----CCCceeeecCcceEEeec---CccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR----SAGKQLSFQDKAYTVEEL---TEDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~----~~g~~~~~~~~~~~v~~~---~~~~~~~~DvVf~a~~~ 111 (376)
..+|.|+|.+..+|+=|.-+|.++ +..+...-+.. ..+.... ......... -.+....+|||+.|.|.
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~---~AtVti~~~~~~~~~~~~~~~~--hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLAND---GARVYSVDINGIQVFTRGESIR--HEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEEecCcccccccccccc--cccccccchhhHHHHHhhhCCEEEEccCC
Confidence 589999999999999999999875 35555331111 0000000 000000000 01224789999999987
Q ss_pred chhhhhHHHHHhCCCeEEEcCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
..-. .-....+.|+.|||.+..
T Consensus 137 ~~~~-i~~d~ik~GavVIDVGi~ 158 (197)
T cd01079 137 PNYK-VPTELLKDGAICINFASI 158 (197)
T ss_pred CCCc-cCHHHcCCCcEEEEcCCC
Confidence 4321 223456789999998865
No 461
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=81.19 E-value=4.3 Score=37.19 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=49.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc--------CCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED--------SFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~--------~~~~~DvVf~a~~ 110 (376)
..+|.|.|+.| +|+.+++++... ..++..+.+....-+.+...+....+...+.. ...++|++|.|.+
T Consensus 135 ~~~vli~g~~~-~G~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 210 (271)
T cd05188 135 GDTVLVLGAGG-VGLLAAQLAKAA---GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG 210 (271)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence 46899999988 999999888765 24555554321111111000001111110100 1246899999998
Q ss_pred C-chhhhhHHHHHhCCCeEEEcCCC
Q 017153 111 G-SISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 111 ~-~~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
. ...... -..+..+.++++++..
T Consensus 211 ~~~~~~~~-~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 211 GPETLAQA-LRLLRPGGRIVVVGGT 234 (271)
T ss_pred CHHHHHHH-HHhcccCCEEEEEccC
Confidence 7 433333 3344566777776654
No 462
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=81.14 E-value=2.9 Score=41.69 Aligned_cols=138 Identities=13% Similarity=0.120 Sum_probs=74.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcC-CCCCeEEEEEecCCCCCceee---e----cCcc-----eEEeec-CccCC----C
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGKQLS---F----QDKA-----YTVEEL-TEDSF----D 100 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~-~~p~~~l~~v~s~~~~g~~~~---~----~~~~-----~~v~~~-~~~~~----~ 100 (376)
...+-|.||||++|.-+++.+... .++...+. ++.|+ ..|.-. . .+.+ +.+.+. |++.+ .
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla-vAGRn-~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak 82 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA-VAGRN-EKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK 82 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEE-EecCC-HHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh
Confidence 467899999999999999866542 24555554 44432 222110 0 1111 222222 23222 4
Q ss_pred CCcEEEEcCCCch--hhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHH
Q 017153 101 GVDIALFSAGGSI--SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLM 178 (376)
Q Consensus 101 ~~DvVf~a~~~~~--s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l 178 (376)
.+-+++-|.|... ....+....+.|+.-||.|+.-.+ +-..+.+.++... .++.-||++-|--....-+
T Consensus 83 ~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f-----~E~mq~kYhd~A~----ekGVYIVsaCGfDSIPaDl 153 (423)
T KOG2733|consen 83 QARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQF-----MERMQLKYHDLAK----EKGVYIVSACGFDSIPADL 153 (423)
T ss_pred hhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHH-----HHHHHHHHHHHHH----hcCeEEEeecccCCCCccc
Confidence 6788888887743 345666778888988998875211 0112223222221 1134566666655555555
Q ss_pred HHhHHHHhC
Q 017153 179 AATPLHRRA 187 (376)
Q Consensus 179 ~L~pL~~~~ 187 (376)
++.=+-+.|
T Consensus 154 Gv~f~~k~f 162 (423)
T KOG2733|consen 154 GVMFLRKNF 162 (423)
T ss_pred eeeeehhhc
Confidence 555454443
No 463
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=81.12 E-value=11 Score=41.53 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=74.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc---eeee-------cC-----------cceEEeecCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK---QLSF-------QD-----------KAYTVEELTE 96 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~---~~~~-------~~-----------~~~~v~~~~~ 96 (376)
..||+|+|| |..|..+...++.++ ++++.+-.. ....+ .+.. .+ ..+... .+.
T Consensus 335 i~~v~ViGa-G~MG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 409 (737)
T TIGR02441 335 VKTLAVLGA-GLMGAGIAQVSVDKG---LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY 409 (737)
T ss_pred ccEEEEECC-CHhHHHHHHHHHhCC---CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 468999999 999999999988764 456544211 11111 0000 00 112222 233
Q ss_pred cCCCCCcEEEEcCCCchhhhh--HH---HHHhCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCCC
Q 017153 97 DSFDGVDIALFSAGGSISKKF--GP---IAVEKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGKG 163 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~~~--~~---~~~~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~~ 163 (376)
+.+.++|+|+.|.+-....+. .. ++...++.+-.++|.+..++ +.-+++=-.|+..+-+ -.
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~------Lv 483 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQ------LL 483 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCc------eE
Confidence 457899999999887665322 22 23456788999999987532 1124444445444332 13
Q ss_pred cEEEcCCchHHHHHHHHh
Q 017153 164 ALIANPNCSTIICLMAAT 181 (376)
Q Consensus 164 ~iVa~PgC~~ta~~l~L~ 181 (376)
.+|..+.+....+..+..
T Consensus 484 Evv~g~~Ts~~~~~~~~~ 501 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVA 501 (737)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 456666655555554443
No 464
>PRK07023 short chain dehydrogenase; Provisional
Probab=81.09 E-value=2.4 Score=38.91 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=25.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|++.|.|+||.+|+.+.+.|.+++ .++..+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEEe
Confidence 689999999999999999998863 4665543
No 465
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.06 E-value=3.6 Score=41.84 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=40.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--e-cCc-----cCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--E-LTE-----DSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~-~~~-----~~~~~~DvVf~a~~~ 111 (376)
|+|.|+|+ |.+|+.+.+.|.+.+ .+++++......-+.+... ..+.+. + .+. ..+.++|+|+.|++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g---~~v~vid~~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGEN---NDVTVIDTDEERLRRLQDR-LDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhh-cCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 58999999 999999999998763 3565554321111111100 011221 1 111 124689999999987
Q ss_pred chh
Q 017153 112 SIS 114 (376)
Q Consensus 112 ~~s 114 (376)
+..
T Consensus 76 ~~~ 78 (453)
T PRK09496 76 DET 78 (453)
T ss_pred hHH
Confidence 554
No 466
>PRK09135 pteridine reductase; Provisional
Probab=81.00 E-value=3.1 Score=38.02 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=26.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.|++|++|+.+.+.|.++ ..++..+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~---g~~v~~~~ 37 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAA---GYRVAIHY 37 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEc
Confidence 478999999999999999999886 34665554
No 467
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=80.99 E-value=2.6 Score=39.01 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|+|.|.|+||.+|..+.+.|.+++ .++..+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 579999999999999999998863 3555443
No 468
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.97 E-value=3.2 Score=38.46 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=26.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.+++.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G---~~v~~~~ 38 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREG---AKVAVLY 38 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 34789999999999999999998863 3555443
No 469
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.92 E-value=7.2 Score=39.85 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=52.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC--ceeeecCcceEEe-ec-CccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLSFQDKAYTVE-EL-TEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g--~~~~~~~~~~~v~-~~-~~~~~~~~DvVf~a~~~~~s 114 (376)
..+|.|+|+ |-+|..+.+.|.+++ .++...-...... ..+......+.+. .. +...+.++|+|+...+-.-.
T Consensus 5 ~~~~~v~G~-g~~G~~~a~~l~~~g---~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~ 80 (445)
T PRK04308 5 NKKILVAGL-GGTGISMIAYLRKNG---AEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISER 80 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCC
Confidence 368999999 899999999999873 3555443221110 0111100123332 11 12224578999988766655
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
......+.++|+.|+
T Consensus 81 ~p~~~~a~~~~i~v~ 95 (445)
T PRK04308 81 QPDIEAFKQNGGRVL 95 (445)
T ss_pred CHHHHHHHHcCCcEE
Confidence 566777778899887
No 470
>PRK06181 short chain dehydrogenase; Provisional
Probab=80.83 E-value=2.7 Score=39.03 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=24.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+|.|.|++|.+|..+++.|.+++ .++..+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g---~~Vi~~~ 32 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAG---AQLVLAA 32 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 478999999999999999988763 3665554
No 471
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=80.46 E-value=3.1 Score=40.97 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=51.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecCc----cCC---CCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTE----DSF---DGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~~----~~~---~~~DvVf~a~ 109 (376)
.-+|-|.||||-||.-+++++... .. ..+++++++.........+.+..+. +.+. .++ .++|+||++.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~--G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL--GA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 368999999999999999988776 33 4444444332111111122222222 1110 112 3699999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEc
Q 017153 110 GGSISKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDl 131 (376)
+.....+....+.. |.+++..
T Consensus 220 G~~~~~~~l~~l~~-~G~lv~i 240 (326)
T COG0604 220 GGDTFAASLAALAP-GGRLVSI 240 (326)
T ss_pred CHHHHHHHHHHhcc-CCEEEEE
Confidence 98877766555544 4454433
No 472
>PRK12746 short chain dehydrogenase; Provisional
Probab=80.33 E-value=3.3 Score=38.21 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=26.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~ 75 (376)
..++.|.|+||.+|.++++.|.+++ .+++.+..+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G---~~v~i~~~r 39 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDG---ALVAIHYGR 39 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCC
Confidence 3689999999999999999998863 355444333
No 473
>PRK14030 glutamate dehydrogenase; Provisional
Probab=80.18 E-value=8.1 Score=39.84 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=56.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec----------------Cc--------ce-EEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ----------------DK--------AY-TVE 92 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~----------------~~--------~~-~v~ 92 (376)
+..||+|=|. |.||..+++.|.+. ..+++++++.+ |.-+... .. .+ ...
T Consensus 227 ~g~~vaIQGf-GnVG~~aA~~L~e~---GakvVavSD~~--G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~ 300 (445)
T PRK14030 227 KGKTVAISGF-GNVAWGAATKATEL---GAKVVTISGPD--GYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGST 300 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEEcCC--ceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCE
Confidence 3589999998 99999999999874 67888775422 2111100 00 00 011
Q ss_pred ecCccC-C-CCCcEEEEc-CCCchhhhhHHHHHhCCCeEEE
Q 017153 93 ELTEDS-F-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 93 ~~~~~~-~-~~~DvVf~a-~~~~~s~~~~~~~~~~G~~VID 130 (376)
.++.++ | .+|||.+-| ++.....+.++++.+.+|++|-
T Consensus 301 ~i~~~~~~~~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~ 341 (445)
T PRK14030 301 FFAGKKPWEQKVDIALPCATQNELNGEDADKLIKNGVLCVA 341 (445)
T ss_pred EcCCccceeccccEEeeccccccCCHHHHHHHHHcCCeEEE
Confidence 122233 3 479987765 6888888999999888999883
No 474
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.18 E-value=3.4 Score=40.18 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=49.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEe-ec--Cc----cCC--CCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVE-EL--TE----DSF--DGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~-~~--~~----~~~--~~~DvVf~a 108 (376)
.-+|.|.||+|-+|..+++++... ..++..+.+....-+.+.. .+.+..+. .. +. ... .++|++|.|
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~---G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLK---GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 368999999999999999887765 3465544432211111100 01111111 00 10 011 378999999
Q ss_pred CCCchhhhhHHHHHhCCCeEEEcC
Q 017153 109 AGGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
.+.....+.. .++..+.+++..+
T Consensus 229 ~g~~~~~~~~-~~l~~~G~iv~~G 251 (338)
T cd08295 229 VGGKMLDAVL-LNMNLHGRIAACG 251 (338)
T ss_pred CCHHHHHHHH-HHhccCcEEEEec
Confidence 9874444333 3445566676554
No 475
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.17 E-value=3.4 Score=38.19 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G---~~v~~~~ 42 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAG---AHVLVNG 42 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC---CeEEEEe
Confidence 3789999999999999999998863 4665554
No 476
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.12 E-value=12 Score=40.98 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=82.7
Q ss_pred CCEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecC-CCCCce---ee--------ec----------CcceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASK-RSAGKQ---LS--------FQ----------DKAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~-~~~g~~---~~--------~~----------~~~~~v~~~~ 95 (376)
-.||+|+|| |..|..+...++ .. .++++++-.. ....+. +. .+ ...+.+. .+
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~---G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~ 383 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKA---GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD 383 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC
Confidence 468999999 999999999887 54 4466654321 111110 00 00 0123322 22
Q ss_pred ccCCCCCcEEEEcCCCchhhhh--HH---HHHhCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCC
Q 017153 96 EDSFDGVDIALFSAGGSISKKF--GP---IAVEKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGK 162 (376)
Q Consensus 96 ~~~~~~~DvVf~a~~~~~s~~~--~~---~~~~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~ 162 (376)
.+.+.++|+||.|.+-....+. .. ++...++.+-.+||.+...+ +--.++=-+|+..+-+ -
T Consensus 384 ~~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~------l 457 (708)
T PRK11154 384 YRGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMP------L 457 (708)
T ss_pred hHHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCc------e
Confidence 3456899999999887665332 22 33456788889999886432 1124555556554432 2
Q ss_pred CcEEEcCCchHHHHHHHHhHHHHhCCCcEEEE
Q 017153 163 GALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (376)
Q Consensus 163 ~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v 194 (376)
..||..+.+.+..+..+..-+ +..+...+.+
T Consensus 458 VEvv~g~~Ts~~~~~~~~~~~-~~~gk~pv~v 488 (708)
T PRK11154 458 VEVIPHAKTSAETIATTVALA-KKQGKTPIVV 488 (708)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHcCCceEEE
Confidence 457878877777666654443 4444445444
No 477
>PRK08309 short chain dehydrogenase; Provisional
Probab=79.90 E-value=6.4 Score=35.24 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=44.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee---cCcceEEeecC---cc-----------CCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF---QDKAYTVEELT---ED-----------SFDG 101 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~---~~~~~~v~~~~---~~-----------~~~~ 101 (376)
|++.|.|+||++|. +.+.|.+++ .++..+. ++.. .+.+.. ....+.....| ++ .+..
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G---~~V~v~~-R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~ 75 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKG---FHVSVIA-RREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGP 75 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCc---CEEEEEE-CCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57899999998876 888888763 3665443 3211 110000 00111111111 11 1235
Q ss_pred CcEEEEcCCCchhhhhHHHHHhCCCe
Q 017153 102 VDIALFSAGGSISKKFGPIAVEKGSI 127 (376)
Q Consensus 102 ~DvVf~a~~~~~s~~~~~~~~~~G~~ 127 (376)
.|++|.+.-.......+....+.|++
T Consensus 76 id~lv~~vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 76 FDLAVAWIHSSAKDALSVVCRELDGS 101 (177)
T ss_pred CeEEEEeccccchhhHHHHHHHHccC
Confidence 67888777666665665555666655
No 478
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=79.57 E-value=3.1 Score=38.19 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=25.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.|++|.+|..+++.|.+++ .+++.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g---~~v~~~~ 33 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG---WSVGINY 33 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 4689999999999999999998863 3555443
No 479
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.48 E-value=5.8 Score=40.76 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEe-ecCccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVE-ELTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~-~~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
.++|.|+|. |-.|.. +++.|.+++ .++.+ .+.+... .... ....+.+. ..+++.+.++|+|+..-+-....
T Consensus 7 ~~~v~viG~-G~sG~s~~a~~L~~~G---~~V~~-~D~~~~~-~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~ 80 (461)
T PRK00421 7 IKRIHFVGI-GGIGMSGLAEVLLNLG---YKVSG-SDLKESA-VTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDN 80 (461)
T ss_pred CCEEEEEEE-chhhHHHHHHHHHhCC---CeEEE-ECCCCCh-HHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCC
Confidence 368999999 999999 799998874 35443 2222111 1110 00123332 22344466889988876555555
Q ss_pred hhHHHHHhCCCeEEE
Q 017153 116 KFGPIAVEKGSIVVD 130 (376)
Q Consensus 116 ~~~~~~~~~G~~VID 130 (376)
....++.++|++|+.
T Consensus 81 ~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 81 PELVAARELGIPVVR 95 (461)
T ss_pred HHHHHHHHCCCcEEe
Confidence 566777788999884
No 480
>PRK12827 short chain dehydrogenase; Provisional
Probab=79.41 E-value=2.1 Score=39.10 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|++|.+|+.+++.|.++++ +++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~---~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA---DVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---eEEEEc
Confidence 47899999999999999999998743 555443
No 481
>PLN02477 glutamate dehydrogenase
Probab=79.33 E-value=9.1 Score=39.09 Aligned_cols=86 Identities=14% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC-------------cceE----EeecCccC-C-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-------------KAYT----VEELTEDS-F- 99 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~-------------~~~~----v~~~~~~~-~- 99 (376)
..||+|.|+ |.||+.+++.|.+. ..+++++++.+ |--+...+ ..+. ...++.++ |
T Consensus 206 g~~VaIqGf-GnVG~~~A~~L~e~---GakVVaVsD~~--G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~ 279 (410)
T PLN02477 206 GQTFVIQGF-GNVGSWAAQLIHEK---GGKIVAVSDIT--GAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILV 279 (410)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc---CCEEEEEECCC--CeEECCCCCCHHHHHHHHHhcCchhccccceEecCcccee
Confidence 489999998 99999999999885 57888886532 21111000 0110 11123333 2
Q ss_pred CCCcEEEEc-CCCchhhhhHHHHHhCCCeEEEcCC
Q 017153 100 DGVDIALFS-AGGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 100 ~~~DvVf~a-~~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
.+|||.+-| ++.....+.++++ +|++|-=.+
T Consensus 280 ~~~DvliP~Al~~~I~~~na~~i---~ak~I~egA 311 (410)
T PLN02477 280 EPCDVLIPAALGGVINKENAADV---KAKFIVEAA 311 (410)
T ss_pred ccccEEeeccccccCCHhHHHHc---CCcEEEeCC
Confidence 589988876 5777777777664 677774333
No 482
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.32 E-value=4.3 Score=39.37 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=49.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCCCCceeee-cCcceEEeecCc---c---CC--CCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAGKQLSF-QDKAYTVEELTE---D---SF--DGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~~g~~~~~-~~~~~~v~~~~~---~---~~--~~~DvVf~a~ 109 (376)
-+|.|.|++|-+|..++++.... .. ++.++.+.......+.. .+.+..+...+. + .+ .++|+||+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~---G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL---GCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 68999999999999999877664 33 55555433211111100 111111211110 0 01 3799999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
+.....+.+ .++..|.++|+++
T Consensus 233 g~~~~~~~~-~~l~~~G~iv~~G 254 (345)
T cd08293 233 GGEISDTVI-SQMNENSHIILCG 254 (345)
T ss_pred CcHHHHHHH-HHhccCCEEEEEe
Confidence 876554333 4456677777664
No 483
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.32 E-value=7.8 Score=40.27 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=48.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-C-ceeeecCcceEEe--ecCccCCCCCcEEEEcCCCchh-
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-G-KQLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGSIS- 114 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g-~~~~~~~~~~~v~--~~~~~~~~~~DvVf~a~~~~~s- 114 (376)
.+|.|+|. |..|..++++|..++ .++...-+.... . ..+...+..+.+. ...++.+.++|+|+...+-...
T Consensus 8 ~~i~v~G~-G~sG~s~a~~L~~~G---~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~ 83 (498)
T PRK02006 8 PMVLVLGL-GESGLAMARWCARHG---ARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE 83 (498)
T ss_pred CEEEEEee-cHhHHHHHHHHHHCC---CEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc
Confidence 58999998 999999999999874 355443222111 1 1111111122332 1233445688988886432221
Q ss_pred ---hhhHHHHHhCCCeEE
Q 017153 115 ---KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ---~~~~~~~~~~G~~VI 129 (376)
.+...++.+.|++|+
T Consensus 84 ~~~~~~~~~a~~~~i~v~ 101 (498)
T PRK02006 84 AALAPLVAAARERGIPVW 101 (498)
T ss_pred cccCHHHHHHHHCCCcEE
Confidence 144555667899988
No 484
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=79.22 E-value=2.9 Score=40.62 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=39.5
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCC--CCcee--ee---cCcceEEe-ecCccCCCCCcEEEEcCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS--AGKQL--SF---QDKAYTVE-ELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~--~g~~~--~~---~~~~~~v~-~~~~~~~~~~DvVf~a~~~ 111 (376)
|+|+|+ |++|..++-.|... +.. +++.+--... .|... .. ......+. ..+.+++.++|+||.|.+.
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~--~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAK--GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCC
Confidence 589998 99999999988876 433 5665532221 11111 00 00112232 2234567899999999875
No 485
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.16 E-value=6.1 Score=40.92 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=51.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEee--cCccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEE--LTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~--~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
..||.|+|+ |-+|+.+++.|...+ .++.. .+++.. ..... ....+.+.. .+++.+.++|+|+...+-.-..
T Consensus 15 ~~~v~v~G~-G~sG~a~a~~L~~~G---~~V~~-~D~~~~-~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~ 88 (473)
T PRK00141 15 SGRVLVAGA-GVSGRGIAAMLSELG---CDVVV-ADDNET-ARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDS 88 (473)
T ss_pred CCeEEEEcc-CHHHHHHHHHHHHCC---CEEEE-ECCChH-HHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCC
Confidence 368999998 999999999998863 34443 333211 11000 001233321 1233456789888876554455
Q ss_pred hhHHHHHhCCCeEEE
Q 017153 116 KFGPIAVEKGSIVVD 130 (376)
Q Consensus 116 ~~~~~~~~~G~~VID 130 (376)
....++.+.|+.|+.
T Consensus 89 p~~~~a~~~gi~v~~ 103 (473)
T PRK00141 89 PLLVDAQSQGLEVIG 103 (473)
T ss_pred HHHHHHHHCCCceee
Confidence 556677788998884
No 486
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.10 E-value=3.8 Score=37.33 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=25.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+|.|.|++|.+|..+++.|.++ ..++..+.
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~---G~~V~~~~ 36 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKE---GAQVCINS 36 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHC---CCEEEEEe
Confidence 68999999999999999999876 34665544
No 487
>PRK09072 short chain dehydrogenase; Provisional
Probab=79.06 E-value=3.8 Score=38.17 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=25.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..++.|.|++|.+|+++++.|++++ .++..+.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G---~~V~~~~ 36 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAG---ARLLLVG 36 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 3689999999999999999998863 3555443
No 488
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=79.01 E-value=3.2 Score=41.55 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=26.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
+.++.|+|++||.|+.|++.|.+++ +..++..+
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~-~~~~irv~ 36 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENE-LKLEIRVV 36 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcc-cccEEEEe
Confidence 5789999999999999999998873 24566544
No 489
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.67 E-value=11 Score=38.46 Aligned_cols=84 Identities=15% Similarity=0.281 Sum_probs=50.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC--ceeeecCcceEEe-e-cCccCCCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLSFQDKAYTVE-E-LTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g--~~~~~~~~~~~v~-~-~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
.+|.|+|. |-.|...+++|..++ .++...-...... ..+. ..+.+. . .+...+.+.|+|+..-+-....
T Consensus 7 ~~i~v~G~-G~sG~s~~~~l~~~G---~~v~~~D~~~~~~~~~~l~---~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~ 79 (438)
T PRK03806 7 KKVVIIGL-GLTGLSCVDFFLARG---VTPRVIDTRITPPGLDKLP---ENVERHTGSLNDEWLLAADLIVASPGIALAH 79 (438)
T ss_pred CEEEEEee-CHHHHHHHHHHHHCC---CeEEEEcCCCCchhHHHHh---cCCEEEeCCCCHHHhcCCCEEEECCCCCCCC
Confidence 68999998 999999999888763 3554332111110 0111 122232 1 1223356789877765544445
Q ss_pred hhHHHHHhCCCeEEE
Q 017153 116 KFGPIAVEKGSIVVD 130 (376)
Q Consensus 116 ~~~~~~~~~G~~VID 130 (376)
....++.+.|+.|+.
T Consensus 80 ~~~~~a~~~g~~v~~ 94 (438)
T PRK03806 80 PSLSAAADAGIEIVG 94 (438)
T ss_pred HHHHHHHHCCCeEEE
Confidence 667777889999874
No 490
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=78.63 E-value=7.6 Score=38.59 Aligned_cols=113 Identities=14% Similarity=0.225 Sum_probs=63.7
Q ss_pred ccccccccCCCCC--CCc-------eeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCcee
Q 017153 12 HFISKLPANKPRT--KPM-------FTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL 82 (376)
Q Consensus 12 ~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~ 82 (376)
+|.-++|.+-+-. -|+ |.-+++..-....+|+|+|+ |-+|--.++..... ..++.++..+...-+..
T Consensus 131 ~~~~~iP~~~d~~~aApllCaGiT~y~alk~~~~~pG~~V~I~G~-GGlGh~avQ~Aka~---ga~Via~~~~~~K~e~a 206 (339)
T COG1064 131 RYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVVGA-GGLGHMAVQYAKAM---GAEVIAITRSEEKLELA 206 (339)
T ss_pred HHeEECCCCCChhhhhhhhcCeeeEeeehhhcCCCCCCEEEEECC-cHHHHHHHHHHHHc---CCeEEEEeCChHHHHHH
Confidence 6777888885432 233 23334433334579999999 77777777776654 37888876433211111
Q ss_pred eecCcceEEeecCccCC----CCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 83 SFQDKAYTVEELTEDSF----DGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 83 ~~~~~~~~v~~~~~~~~----~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
..-+.+..+...+++.. ..+|+++.+.+ ..+-+..-+++..|-+++
T Consensus 207 ~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 207 KKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLV 256 (339)
T ss_pred HHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHHHHHhcCCEEE
Confidence 11123343432233222 12899999988 666555555556555554
No 491
>PRK06198 short chain dehydrogenase; Provisional
Probab=78.58 E-value=4.3 Score=37.55 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDR 62 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~ 62 (376)
..++.|.|++|.+|..+++.|.++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~ 29 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAER 29 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC
Confidence 468999999999999999999876
No 492
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.50 E-value=4 Score=37.70 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=25.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
.+++.|.|+||++|+.+++.|.++++ +++.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~---~v~~~ 37 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA---AVAIA 37 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---eEEEE
Confidence 36899999999999999999998743 55544
No 493
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=78.37 E-value=1.4 Score=41.87 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=28.4
Q ss_pred cCCCCCcEEEEcCCCchhhhhHHHHHh---CCCeEEEcCCC
Q 017153 97 DSFDGVDIALFSAGGSISKKFGPIAVE---KGSIVVDNSSA 134 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~~~~~~~~~---~G~~VIDlS~~ 134 (376)
+.+.++|+|++|+|-....++.+++.. .|+.|+|.+|-
T Consensus 41 ~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~Sv 81 (258)
T PF02153_consen 41 EAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVGSV 81 (258)
T ss_dssp HHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--S-
T ss_pred hHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeCCC
Confidence 346789999999999999999888764 78999999986
No 494
>PLN02494 adenosylhomocysteinase
Probab=78.27 E-value=4.1 Score=42.29 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=48.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--CceeeecCcceEEeecCccCCCCCcEEEEcCCCchh--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS-- 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s-- 114 (376)
..+|+|+|+ |.+|+.+++.+... ..+++++. .+.. ......+ ..+..+ .+.+..+|+||+|++....
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~---Ga~VIV~e-~dp~r~~eA~~~G---~~vv~l-eEal~~ADVVI~tTGt~~vI~ 324 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAA---GARVIVTE-IDPICALQALMEG---YQVLTL-EDVVSEADIFVTTTGNKDIIM 324 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEe-CCchhhHHHHhcC---CeeccH-HHHHhhCCEEEECCCCccchH
Confidence 479999999 99999999999765 34655432 2211 0110011 112122 1234688999999886432
Q ss_pred hhhHHHHHhCCCeEEEcC
Q 017153 115 KKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDlS 132 (376)
.+... ..+.|+.+|-.+
T Consensus 325 ~e~L~-~MK~GAiLiNvG 341 (477)
T PLN02494 325 VDHMR-KMKNNAIVCNIG 341 (477)
T ss_pred HHHHh-cCCCCCEEEEcC
Confidence 22222 345688888544
No 495
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=78.25 E-value=3.4 Score=40.69 Aligned_cols=89 Identities=17% Similarity=0.078 Sum_probs=47.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeec---Cc-c---CC--CCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEEL---TE-D---SF--DGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~---~~-~---~~--~~~DvVf~a 108 (376)
.-+|.|.|++|-+|..+++++... ..++..+.+....-..+. ..+.+..+... +. + .+ .++|++|+|
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLH---GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 368999999999999999887765 345554443211111110 01111112110 10 0 01 368999999
Q ss_pred CCCchhhhhHHHHHhCCCeEEEc
Q 017153 109 AGGSISKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VIDl 131 (376)
++........ .++..|.+++..
T Consensus 236 vG~~~~~~~~-~~l~~~G~iv~~ 257 (348)
T PLN03154 236 VGGDMLDAAL-LNMKIHGRIAVC 257 (348)
T ss_pred CCHHHHHHHH-HHhccCCEEEEE
Confidence 9865433333 344556666544
No 496
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=78.22 E-value=5.5 Score=37.10 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=50.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCce--eeec----Ccce---EEeecCc-cCCCCCcEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQ--LSFQ----DKAY---TVEELTE-DSFDGVDIA 105 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~--~~~~----~~~~---~v~~~~~-~~~~~~DvV 105 (376)
..||.|+|| |-+|+.+++.|...+...-++. +.+++. ..+. +... -+.. .. ..+. +.+.++|++
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~-ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~-~~~l~~~l~~~dvl 101 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKPENIV-VVDSKGVIYEGREDDLNPDKNEIAKETNPEKT-GGTLKEALKGADVF 101 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCcceEE-EEeCCCccccccchhhhHHHHHHHHHhccCcc-cCCHHHHHhcCCEE
Confidence 379999999 9999999999987632200343 433331 1111 1000 0001 01 1121 234578999
Q ss_pred EEcCCCchh-hhhHHHHHhCCCeEEEcCCC
Q 017153 106 LFSAGGSIS-KKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 106 f~a~~~~~s-~~~~~~~~~~G~~VIDlS~~ 134 (376)
+.|++.+.- .+..+.. ..+..|+|++.+
T Consensus 102 IgaT~~G~~~~~~l~~m-~~~~ivf~lsnP 130 (226)
T cd05311 102 IGVSRPGVVKKEMIKKM-AKDPIVFALANP 130 (226)
T ss_pred EeCCCCCCCCHHHHHhh-CCCCEEEEeCCC
Confidence 999975543 3333333 356778888844
No 497
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.17 E-value=4.2 Score=37.63 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=25.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
..+|.|.|++|.+|+.+++.|.+++ .+++.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G---~~V~~~ 40 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAG---AEVILN 40 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcC---CEEEEE
Confidence 3689999999999999999998863 466544
No 498
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=78.11 E-value=7.3 Score=37.29 Aligned_cols=90 Identities=19% Similarity=0.077 Sum_probs=49.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc------CC--CCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED------SF--DGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~------~~--~~~DvVf~a~~ 110 (376)
.-+|.|.|++|-+|..+++++... ..++.++++....-..+...+.+..+...+++ .+ .++|+||.|.+
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~---G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g 220 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIK---GCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVG 220 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCC
Confidence 368999999999999999888765 34665554322111111001111111111100 01 36899999998
Q ss_pred CchhhhhHHHHHhCCCeEEEcC
Q 017153 111 GSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS 132 (376)
.....+.. +++..+.+++..+
T Consensus 221 ~~~~~~~~-~~l~~~G~iv~~g 241 (329)
T cd08294 221 GEFSSTVL-SHMNDFGRVAVCG 241 (329)
T ss_pred HHHHHHHH-HhhccCCEEEEEc
Confidence 75444433 3445566666554
No 499
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.09 E-value=3.9 Score=37.55 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=25.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
.++.|.|+||.+|+++++.|.+++ .+++.+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g---~~v~~~~~ 36 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEG---YDIAVNYA 36 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcC
Confidence 689999999999999999999873 35544333
No 500
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.90 E-value=6.5 Score=37.90 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=46.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
.+|.|+|+ |-+|.-.++++... ..+.+.+.+... . .+..... ..+...+.+.-.++|+||+|++.....+.+-
T Consensus 146 ~~vlV~G~-G~vG~~a~q~ak~~---G~~~v~~~~~~~-~-rl~~a~~-~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~ 218 (308)
T TIGR01202 146 LPDLIVGH-GTLGRLLARLTKAA---GGSPPAVWETNP-R-RRDGATG-YEVLDPEKDPRRDYRAIYDASGDPSLIDTLV 218 (308)
T ss_pred CcEEEECC-CHHHHHHHHHHHHc---CCceEEEeCCCH-H-HHHhhhh-ccccChhhccCCCCCEEEECCCCHHHHHHHH
Confidence 57999996 99999998877765 234333333221 1 1111111 1111111111246899999999865544444
Q ss_pred HHHhCCCeEEEcC
Q 017153 120 IAVEKGSIVVDNS 132 (376)
Q Consensus 120 ~~~~~G~~VIDlS 132 (376)
+++..|.+++-.+
T Consensus 219 ~~l~~~G~iv~~G 231 (308)
T TIGR01202 219 RRLAKGGEIVLAG 231 (308)
T ss_pred HhhhcCcEEEEEe
Confidence 4555566666443
Done!