RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017153
(376 letters)
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 579 bits (1495), Expect = 0.0
Identities = 167/335 (49%), Positives = 222/335 (66%), Gaps = 9/335 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVG+E L VL R+FP +++ AS RSAG +L+F+ + VE L E
Sbjct: 3 VAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGPL-P 61
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
VD+ L SAGG IS+ + E G++VVDNSSA+R VPLV+PEVN E + +
Sbjct: 62 VDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIFQHR---- 117
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNC+T I MA PLHR + R++V+TYQAASGAGA AMEEL +T L G
Sbjct: 118 --GIIANPNCTTAILAMALWPLHRAFQAKRVIVATYQAASGAGAKAMEELLTETHRFLHG 175
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVM 281
+ P + F+ FN+ H ENGY EEMK+V ET KI+ D +R++AT +RVP +
Sbjct: 176 EAPKAEAFAHPLPFNVIPHIDAFQENGYTREEMKVVWETHKIFGDDTIRISATAVRVPTL 235
Query: 282 RAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRR 341
RAHAE+V+++F +P+ + AR++LK APGV V+D+ + +P PL S K DV VGRIR+
Sbjct: 236 RAHAEAVSVEFARPVTPEAAREVLKEAPGVEVVDEPEAKRYPMPLTASGKWDVEVGRIRK 295
Query: 342 DVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
++ + +GLD FV GDQ+ KGAALNAVQIAE L
Sbjct: 296 SLAFE--NGLDFFVVGDQLLKGAALNAVQIAEEWL 328
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 566 bits (1461), Expect = 0.0
Identities = 149/355 (41%), Positives = 205/355 (57%), Gaps = 24/355 (6%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
M Y +VAVVG TGAVG + + +L + P I+ LAS RSAGK L F+D+ T+E
Sbjct: 1 MGY-----TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIE 55
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
E TE +F+GVDIALFSAG S S K+ P AV+ G +VVDN+S FR +VPLV+PEVN A
Sbjct: 56 ETTETAFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHA 115
Query: 153 MSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELE 212
+ +IA PNCSTI ++A P+ ++ + R++VSTYQA SGAG A+ E +
Sbjct: 116 LDAHN------GIIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQ 169
Query: 213 LQTREVLEGK-----------PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261
+ REVL P AFN +N Y EEMKM KET+
Sbjct: 170 RELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETK 229
Query: 262 KIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNH 321
KI D + V+ATC+R+PV+ AH+ESV ++ ++ + + + PG V+ DD A
Sbjct: 230 KIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAFPGAVLEDDVAHQI 289
Query: 322 FPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+P + D VGRIR+D+ + G+ ++V D + KGAA N+VQIAE L
Sbjct: 290 YPQAINAVGSRDTFVGRIRKDLDAE--KGIHMWVVSDNLLKGAAWNSVQIAETLH 342
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 554 bits (1431), Expect = 0.0
Identities = 97/346 (28%), Positives = 168/346 (48%), Gaps = 14/346 (4%)
Query: 32 RMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV 91
MS +VAVVG TG+VG+ + +L +RDFP + +LAS SAG+++ F + + V
Sbjct: 2 HMS---QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV 58
Query: 92 EELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE 151
++ F V +A F+A +S+ A G V+D S A P V+ VN E
Sbjct: 59 GDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEP-SVAPPVMVSVNAE 117
Query: 152 AMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEEL 211
++ L+++P PL ++ ++ + S G ++EL
Sbjct: 118 RLASQA----APFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKEL 173
Query: 212 ELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRV 271
QT E+L +P ++F +Q AFNL + V G++ E ++ E + + ++ +
Sbjct: 174 ARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPL 233
Query: 272 TATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSN 330
TCI+ PV + SV LQ +P+D +L G+ + + +PT + +
Sbjct: 234 NVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGE---GDYPTVVGDALG 290
Query: 331 KDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+D+ VGR+R + +++++ D VRKGAALNAV + E+L+
Sbjct: 291 QDETYVGRVRAGQADP--CQVNLWIVSDNVRKGAALNAVLLGELLI 334
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change,
half-OF-sites-reactivity, protein evolution, sequence
homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A*
2r00_C*
Length = 336
Score = 553 bits (1428), Expect = 0.0
Identities = 153/336 (45%), Positives = 213/336 (63%), Gaps = 10/336 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VA+ G TGAVG+ L VL +R+FP + +LAS+RS GK F K V+ + E +
Sbjct: 6 VAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQ 65
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V IALFSAGG +S K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ +
Sbjct: 66 VHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR---- 121
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNCSTI L+A P++ + R+ V+TYQ+ SGAG A ++EL QT ++L G
Sbjct: 122 NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNG 181
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVM 281
P FSQQ AFN ++NGY +EEMKMV ET+KI+ND + V TC+RVPV
Sbjct: 182 YPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVF 241
Query: 282 RAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIR 340
HAE+V+++ P+D + D+L+ G+ + FPT + + KD V VGR+R
Sbjct: 242 YGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFRG---ADFPTQVRDAGGKDHVLVGRVR 298
Query: 341 RDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
D+S G++++V D VRKGAA NAVQIAE+L+
Sbjct: 299 NDISHH--SGINLWVVADNVRKGAATNAVQIAELLV 332
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid
biosynthesis, diaminopimelate biosynthesis, lysine
biosynthesis; HET: SO4; 1.95A {Mycobacterium
tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Length = 344
Score = 551 bits (1422), Expect = 0.0
Identities = 142/351 (40%), Positives = 203/351 (57%), Gaps = 23/351 (6%)
Query: 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS 98
S+ +VG TG VGQ ++L +RDFP +++ AS RS G++L+F+ + VE+
Sbjct: 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETAD 60
Query: 99 FDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
G+DIALFSAG ++SK P G V+DNSSA+R +VPLV+ EVN E + +
Sbjct: 61 PSGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRR- 119
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
KG +IANPNC+T+ + LH A++ R+VVS+YQA SG+G A + EL Q R V
Sbjct: 120 --PKG-IIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAV 176
Query: 219 LEGKP-----------PTCKIFSQQYAFNLFSHNAPVLENGYNE--EEMKMVKETRKIWN 265
+ G P + AFN+ ++++G E E+ K+ E+RKI
Sbjct: 177 IGGAEQLVYDGGALEFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILG 236
Query: 266 DKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP 325
D+ V+ TC+RVPV H+ S+N +F +PL + AR++L A GV ++D PTP
Sbjct: 237 IPDLLVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLDGATGVQLVD------VPTP 290
Query: 326 LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
L + D+ VGRIRRD GL +FV GD +RKGAALN +QIAE+L
Sbjct: 291 LAAAGVDESLVGRIRRDPGVPDGRGLALFVSGDNLRKGAALNTIQIAELLT 341
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease
(ssgcid); 1.55A {Burkholderia thailandensis}
Length = 377
Score = 494 bits (1275), Expect = e-176
Identities = 98/377 (25%), Positives = 150/377 (39%), Gaps = 42/377 (11%)
Query: 38 SAPSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE 96
+ +V +VG G VG + + + DF ++ + GK SF T+++ T
Sbjct: 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATS 62
Query: 97 -DSFDGVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAM 153
D D+ + GG + P G +D +S+ RM ++ +++ VN +
Sbjct: 63 IDDLKKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVI 122
Query: 154 SGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELEL 213
V G NC+ + LMA L R V M TYQAASGAGA M EL
Sbjct: 123 KDALVN-GTK-NFIGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLA 180
Query: 214 QTREV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248
Q + + G F A +L L NG
Sbjct: 181 QMGTLNGAVAAQLADPASAILDIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNG 240
Query: 249 YNEEEMKMVKETRKIWN------DKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTAR 302
+ EE K ET KI V V C+R+ MR H++++ ++ +K + D
Sbjct: 241 MSREEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGAMRCHSQALTIKLKKDVPLDEIN 300
Query: 303 DILKNAPGVVVI---DDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQ 359
IL +A V + + AS +P +V+ V VGR+R+ G L F GDQ
Sbjct: 301 GILASANDWVKVVPNEREASMRDLSPAKVTGTLSVPVGRLRKLAM--GGEYLSAFTVGDQ 358
Query: 360 VRKGAALNAVQIAEMLL 376
+ GAA ++ +LL
Sbjct: 359 LLWGAAEPLRRMLRILL 375
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 486 bits (1254), Expect = e-173
Identities = 90/370 (24%), Positives = 150/370 (40%), Gaps = 40/370 (10%)
Query: 42 VAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSF 99
V +VG G VG + ++ +RDF ++ + +F A + + +S
Sbjct: 3 VGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESL 62
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157
+D + GGS ++K P + G +D +S RM + + + VN + I
Sbjct: 63 KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQ---IL 119
Query: 158 VGMGKGA-LIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTR 216
G+ G NC+ + LMA L+ R V M TYQAASGAGA M EL Q
Sbjct: 120 HGIHHGTKTFVGGNCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMG 179
Query: 217 EV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251
+ + F A +L +NG ++
Sbjct: 180 VINDAVSSELANPASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSK 239
Query: 252 EEMKMVKETRKIWN--DKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP 309
EE K E KI D V + TC+R+ MR H++++ ++ ++ + D +++
Sbjct: 240 EEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIEEMIATHN 299
Query: 310 GVVVI---DDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAAL 366
V + + + TP +V+ V VGR+R+ D L+ F GDQ+ GAA
Sbjct: 300 DWVKVIPNERDITARELTPAKVTGTLSVPVGRLRKMAMGD--DFLNAFTVGDQLLWGAAE 357
Query: 367 NAVQIAEMLL 376
+ ++L
Sbjct: 358 PLRRTLRIIL 367
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 482 bits (1244), Expect = e-172
Identities = 90/370 (24%), Positives = 147/370 (39%), Gaps = 39/370 (10%)
Query: 40 PSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-D 97
+V +G G VG + ++ +RDF ++ + SF T+++ + +
Sbjct: 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLE 61
Query: 98 SFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+ +DI + GG + + P E G +D +S+ RM ++ +++ VN +
Sbjct: 62 ALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDV--- 118
Query: 156 IKVGMGKG-ALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQ 214
I G+ G NC+ + LM+ L V + V+TYQAASG GA M EL Q
Sbjct: 119 ITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQ 178
Query: 215 TREV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249
+ F A +L L+NG
Sbjct: 179 MGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQ 238
Query: 250 NEEEMKMVKETRKIWNDKD-VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA 308
+ EE K ET KI N + V C+RV +R H+++ ++ +K + T ++L
Sbjct: 239 SREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAH 298
Query: 309 ---PGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAA 365
VV D + TP V+ VGR+R+ G L F GDQ+ GAA
Sbjct: 299 NPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNM--GPEFLSAFTVGDQLLWGAA 356
Query: 366 LNAVQIAEML 375
++ L
Sbjct: 357 EPLRRMLRQL 366
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 393 bits (1012), Expect = e-137
Identities = 87/367 (23%), Positives = 154/367 (41%), Gaps = 60/367 (16%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ------------LSFQDKAY 89
V+++G TG VGQ+ + +L+ + +K+ AS GK+ + + +
Sbjct: 7 VSLLGSTGMVGQKMVKMLAKHPY-LELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDL 65
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVN 149
+ + VD+ L + +++ V+ G IVV N+S FRM +VPL+ PE+N
Sbjct: 66 PIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDVPLINPEIN 125
Query: 150 PEAMSGIKV----GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGA 205
E + +K KG L+ NPNC+ I M PL A ++++++T QA SGAG
Sbjct: 126 WEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIATKSKIIITTLQAVSGAGY 185
Query: 206 AAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMV--KETRKI 263
+ + + N+ + E+ +E K+ E +I
Sbjct: 186 NGISFMAI--------------------EGNIIPYI-KGEEDKIAKELTKLNGKLENNQI 224
Query: 264 WNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG------------- 310
++ T T IRVP H +N+ + ++ + + LKN
Sbjct: 225 -IPANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKSLPQQKNLPTAPKQ 283
Query: 311 -VVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAV 369
++V D+ + + V VGRIR + N+ L + V GD + +GAA +
Sbjct: 284 PIIVRDEEDRPQPIIDVNAESGMAVTVGRIRHE-----NNVLRLVVLGDNLVRGAAGITI 338
Query: 370 QIAEMLL 376
E++
Sbjct: 339 LTVEVMK 345
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 380 bits (978), Expect = e-132
Identities = 96/389 (24%), Positives = 165/389 (42%), Gaps = 78/389 (20%)
Query: 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ 85
M +M V V+G TG+VGQ F+ +L+D P + L AS+RSAGK+
Sbjct: 1 MSKGEKMKI-----KVGVLGATGSVGQRFVQLLADH--PMFELTALAASERSAGKKYKDA 53
Query: 86 DKAYTVEELTE--------------DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDN 131
+ ++ E + F+ VDI + ++KKF P ++G ++ N
Sbjct: 54 CYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSN 113
Query: 132 SSAFRMVENVPLVIPEVNPEAMSGIKVGMG----KGALIANPNCSTIICLMAATPLHRRA 187
+SA+RM E+VPLVIPEVN + + I++ GA+I NPNCSTI ++ P+ +
Sbjct: 114 ASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKF 173
Query: 188 KVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247
+ + ++T QA SGAG + + + NL
Sbjct: 174 GLEAVFIATMQAVSGAGYNGVPSMAI--------------------LDNLIPF------- 206
Query: 248 GYNEEEMKMVKETRKIWN--------DKDVRVTATCIRVPVMRAHAESVNLQFEKPLDED 299
EE KM E+ K+ + +++A+C RV V+ H ES+ ++ ++ + +
Sbjct: 207 -IKNEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPE 265
Query: 300 TARDILKNAPGV------------VVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDG 347
++++ + V+ ++ N + VGRIR+D
Sbjct: 266 EIKEVMDKFDPLKDLNLPTYAKPIVIREEIDRPQPRLDRNEGNGMSIVVGRIRKDPI--- 322
Query: 348 NHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+ +GAA +V AE +
Sbjct: 323 -FDVKYTALEHNTIRGAAGASVLNAEYFV 350
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 365 bits (938), Expect = e-125
Identities = 97/411 (23%), Positives = 154/411 (37%), Gaps = 91/411 (22%)
Query: 20 NKPRTKPMFTR-VRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRS 77
+ + + R MS V+G TG+VGQ F+ +LS P I L AS RS
Sbjct: 3 HHHHSSGLVPRGSHMS----VKKAGVLGATGSVGQRFILLLSKH--PEFEIHALGASSRS 56
Query: 78 AGKQLSF------------QDKAYTVEELTED-SFDGVDIALFSAGGSISKKFGPIAVEK 124
AGK+ ++ V+E + +F D+ ++ VE
Sbjct: 57 AGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEA 116
Query: 125 GSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV---------GMGKGALIANPNCSTII 175
G VV N+ +R ++VPLV+P VNPE + ++ G G +I NCST
Sbjct: 117 GLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAG 176
Query: 176 CLMAATPLHRR-AKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYA 234
+ PL + + + +T QA SGAG + +
Sbjct: 177 LVAPLKPLVEKFGPIDALTTTTLQAISGAGFSPG-------------------VSGMDIL 217
Query: 235 FNLFSHNAPVLENGYNEEEMKMVKETRKIW-------------NDKDVRVTATCIRVPVM 281
N+ + + EE K+ ET+KI + +++V+A C RVPV+
Sbjct: 218 DNIVPY--------ISGEEDKLEWETKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVI 269
Query: 282 RAHAESVNLQFEK--PLDEDTARDILKNAPG--------------VVVIDDRASNHFPTP 325
H E ++L+F + + L+ + V+D
Sbjct: 270 DGHTECISLRFANRPAPSVEDVKQCLREYECAASKLGCHSAPKQTIHVLDQPDRPQPRLD 329
Query: 326 LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+ + V+VGRIR D D + V GAA + IAE+L
Sbjct: 330 RDRDSGYGVSVGRIREDSLLD----FKMVVLSHNTIIGAAGAGILIAEILK 376
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 67.3 bits (164), Expect = 9e-13
Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 31/242 (12%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA--SKRSAG----KQLSFQDKAYTVEEL 94
VA++G +G +G + + + R+ Y + + S G +++ VE L
Sbjct: 6 KVAIIG-SGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGL 63
Query: 95 TE-DSFDGVDIALF--SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE 151
+ F +D SA + + + G ++D + A P +P VN E
Sbjct: 64 IKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIG----PYCVPVVNLE 119
Query: 152 AMSGIK-VGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEE 210
G V M + +TI + A + + + + + ++A A ++E
Sbjct: 120 EHLGKLNVNM-----VTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDE 174
Query: 211 LELQTREVLE--GKPPTCK---IFSQQYAFNLFSHNAPVLENGYNEEE-----MKMVKET 260
T + +E G K I + + VL ++ +MV+
Sbjct: 175 FTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAV 234
Query: 261 RK 262
+
Sbjct: 235 QA 236
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid
biosynthesis, structural genomics, riken structur
genomics/proteomics initiative; 2.01A {Thermus
thermophilus}
Length = 345
Score = 57.9 bits (141), Expect = 1e-09
Identities = 64/368 (17%), Positives = 117/368 (31%), Gaps = 87/368 (23%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------FQDKAYTVE 92
++++VG +G G EFL + PY +K + S+R AG+ + + +
Sbjct: 6 TLSIVGASGYAGGEFLRLALSH--PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFV-- 61
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFR---------------- 136
+ + DI + + + + ++VD S+ FR
Sbjct: 62 --PPEKLEPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGEHPR 119
Query: 137 --MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVTR 191
++ +PE+ EA+ KGA IA C+ L+ PL K T
Sbjct: 120 PDLLGRFVYAVPELYREAL--------KGADWIAGAGCNATATLLGLYPLLKAGVLKPTP 171
Query: 192 MVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH-NAPVLENGYN 250
+ V+ + S GA A E + H + +
Sbjct: 172 IFVTLLISTSAGGAEASPASHHP--ERAGS-------IR---VYKPTGHRHTAEV----- 214
Query: 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMR-AHAESVNLQFEKPLDEDTARDIL---- 305
E + V T I +R + + E
Sbjct: 215 VENLP-----------GRPEVHLTAIATDRVRGILM-TAQCFVQDGWSERDVWQAYREAY 262
Query: 306 KNAPGVVVIDDRASNH-FPTPLEV--SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRK 362
P + ++ + H +P P V +N D+ ++ +D L + D + K
Sbjct: 263 AGEPFIRLVKQKKGVHRYPDPRFVQGTNYADIGF-----ELEEDTGR-LVVMTAIDNLVK 316
Query: 363 GAALNAVQ 370
G A +A+Q
Sbjct: 317 GTAGHALQ 324
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural
genomics, protein structure initiative, CENT eukaryotic
structural genomics; 2.19A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Length = 359
Score = 51.8 bits (125), Expect = 1e-07
Identities = 68/368 (18%), Positives = 130/368 (35%), Gaps = 87/368 (23%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAY------TVEELT 95
+ ++G +G G E + +L++ P+ + ++ + R AG+ + T+ +
Sbjct: 19 IGLLGASGYTGAEIVRLLANH--PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK 76
Query: 96 EDSFDGVDIALFSA---GGSISKKFGPIAVEKGSIVVDNSSAFR---------------- 136
+ F VD F G +++ + +VD S+ FR
Sbjct: 77 DADFSTVDAV-FCCLPHG--TTQEIIK-ELPTALKIVDLSADFRLRNIAEYEEWYGQPHK 132
Query: 137 ---MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVT 190
+ + V + E+ E + K A L+ANP C + PL K
Sbjct: 133 AVELQKEVVYGLTEILREDI--------KKARLVANPGCYPTTIQLPLVPLLKANLIKHE 184
Query: 191 RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH-NAPVLENGY 249
+++ SGAG A E E+ EG S ++ + H + P
Sbjct: 185 NIIIDAKSGVSGAGRGAKEANLYS--EIAEG-------IS---SYGVTRHRHVP------ 226
Query: 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMR-AHAESVNLQFEKPLDEDTARDIL--- 305
E+ ++ V V+ T +P++R + ++ ++ + + L
Sbjct: 227 ---EI---EQGLSDVAQSKVTVSFTPHLMPMIRGMQS-TIYVEMAPGVRTEDLHQQLKTS 279
Query: 306 -KNAPGVVVIDDRASNHFPTPLEV--SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRK 362
++ V V+D+ P V SN ++V R I D + K
Sbjct: 280 YEDEEFVKVLDE---GVVPRTHNVRGSNYCHMSVFPDRI------PGRAIIISVIDNLVK 330
Query: 363 GAALNAVQ 370
GA+ A+Q
Sbjct: 331 GASGQALQ 338
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC,
essential gene, amino-acid biosynthesis, arginine
biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella
flexneri} PDB: 2g17_A
Length = 337
Score = 49.9 bits (120), Expect = 6e-07
Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 44/201 (21%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLS--------FQDKAY 89
+ +VG +G G E ++ ++ P+ +I L AGK +S +
Sbjct: 6 NTLIVGASGYAGAELVTYVNRH--PHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPL 63
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFR------------- 136
+ GVD+ + +S P +E G +V D S AFR
Sbjct: 64 QPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGF 123
Query: 137 ------MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPLHRRAKV 189
++E + E + K A LIA P C +A PL +
Sbjct: 124 THQYPELLEQAAYGLAEWCGNKL--------KEANLIAVPGCYPTAAQLALKPLIDADLL 175
Query: 190 ---TRMVVSTYQAASGAGAAA 207
V++ SGAG A
Sbjct: 176 DLNQWPVINATSGVSGAGRKA 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 5e-06
Identities = 62/442 (14%), Positives = 116/442 (26%), Gaps = 162/442 (36%)
Query: 18 PANKPRTKPMFTRVRMSYQE--SAPSVAVVGVTGAVGQEFL--SVLSDRD----FPYR-- 67
N R +P + ++R + E A +V + GV G+ G+ ++ V ++
Sbjct: 128 KYNVSRLQP-YLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIF 185
Query: 68 ------------SIKMLAS----------------------KRSAGKQLS--FQDKAYT- 90
++ML S +L + K Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 91 -------VEELTE-DSFD-GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENV 141
V+ ++F+ I L + ++ A + +S E
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEVK 304
Query: 142 PLV----------IPE----VNPEAMSGIKVGMGKGALIANPNC-------------STI 174
L+ +P NP +S I I + +TI
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSII------AESIRDGLATWDNWKHVNCDKLTTI 358
Query: 175 I--CLMAATP-LHRR-----------AKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
I L P +R+ A + +++S + +L ++E
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 221 --GKPPTCKIFS--------------------QQYAFNL-FSHN--APVLENGY------ 249
K T I S Y F + P + Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 250 ----NEEEMKMVKETRKI-----WNDKDVRVTATCIRVPVMRAHAESVNL--QFEK---- 294
N E + + R + + ++ +R +T +N Q +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-----GSILNTLQQLKFYKPY 533
Query: 295 -----PLDEDTARDILKNAPGV 311
P E IL P +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKI 555
Score = 47.5 bits (112), Expect = 5e-06
Identities = 47/338 (13%), Positives = 92/338 (27%), Gaps = 82/338 (24%)
Query: 14 ISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73
I T +F + S QE +V Q+F+ + ++ + L
Sbjct: 54 IIMSKDAVSGTLRLFWTLL-SKQEE-----MV-------QKFVEEVLRINYKF-----LM 95
Query: 74 SK-RSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132
S ++ +Q S + Y E + ++ + F V +
Sbjct: 96 SPIKTEQRQPSMMTRMY--IEQRDRLYNDNQV------------FAKYNVSR-------- 133
Query: 133 SAFRMVENVPLVIPEVNPEAMSGIKV-GM---GKGALIANPNCST--IICLMA------- 179
+ + + E+ P + + G+ GK + + C + + C M
Sbjct: 134 --LQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLN 188
Query: 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIF-SQQYAFNLF 238
+ V M+ + + + + ++ S+ Y L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 239 SHNAPVLENGYNEEEM-------KMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQ 291
VL N N + K++ TR K V T H +
Sbjct: 249 -----VLLNVQNAKAWNAFNLSCKILLTTR----FKQV----TDFLSAATTTHISLDHH- 294
Query: 292 FEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVS 329
L D + +L D P +S
Sbjct: 295 -SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer,
rossmann fold, structural genomics, PSI, protein
structure initiative; 1.58A {Mycobacterium tuberculosis}
PDB: 2i3a_A* 2i3g_A
Length = 352
Score = 45.3 bits (108), Expect = 2e-05
Identities = 71/368 (19%), Positives = 113/368 (30%), Gaps = 85/368 (23%)
Query: 41 SVAVVGVTGAVGQEFLSVLS---DRDFPYRSIKMLASKRSAGKQLS--------FQDKAY 89
VAV G +G G E L +L I L + SAG L +
Sbjct: 11 KVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHR-- 68
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPL------ 143
VE G D + S + ++++D + FR+ + +
Sbjct: 69 VVEPTEAAVLGGHDAVFLALPHGHSAVLAQ-QLSPETLIIDCGADFRL-TDAAVWERFYG 126
Query: 144 -------V--IPEV--NPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPLHRRAKV-T 190
+PE+ + + +G IA P C L+A P +
Sbjct: 127 SSHAGSWPYGLPELPGARDQL--------RGTRRIAVPGCYPTAALLALFPALAADLIEP 178
Query: 191 RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFS---HNAPVLEN 247
+ V SGAG AA +L EV+ A+N+ H
Sbjct: 179 AVTVVAVSGTSGAGRAATTDLLGA--EVIGS-------AR---AYNIAGVHRHTP----- 221
Query: 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMR-AHAESVNLQFEKPLDE--DTARDI 304
E+ + + D+DV V+ T + +P R A + + PL +
Sbjct: 222 -----EI---AQGLRAVTDRDVSVSFTPVLIPASRGILA-TCTARTRSPLSQLRAAYEKA 272
Query: 305 LKNAPGVVVIDDRASNHFPTPLEV--SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRK 362
P + ++ + P V SN +AV D + K
Sbjct: 273 YHAEPFIYLMPEGQ---LPRTGAVIGSNAAHIAVAVDED------AQTFVAIAAIDNLVK 323
Query: 363 GAALNAVQ 370
G A AVQ
Sbjct: 324 GTAGAAVQ 331
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; 1.80A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.1
Length = 351
Score = 45.2 bits (108), Expect = 2e-05
Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 46/200 (23%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-----FQDKAYTVEELTE 96
++G TG G E + +L + P I L+S+ AGK+L + + E E
Sbjct: 16 AGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 73
Query: 97 DSFDGVDIALFS----AGGSISKKFGPIAVEKGSIVVDNSSAFRM--------------- 137
D+ + A + ++ KG ++D + FR
Sbjct: 74 KVSKNCDVLFTALPAGASYDLVREL------KGVKIIDLGADFRFDDPGVYREWYGKELS 127
Query: 138 -VENVPLV--IPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVTR 191
EN+ V +PE++ E + K A ++ NP C ++A P H
Sbjct: 128 GYENIKRVYGLPELHREEI--------KNAQVVGNPGCYPTSVILALAPALKHNLVDPET 179
Query: 192 MVVSTYQAASGAGAAAMEEL 211
++V SGAG +
Sbjct: 180 ILVDAKSGVSGAGRKEKVDY 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 5e-04
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 42/137 (30%)
Query: 105 ALFSAGGSIS-----K------KFGPIAVEKGSIVVDNSSAFRMVENVP-LVIPEVNPEA 152
AL S +S + +AV + + S + M+ P V + EA
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL---GRSNYGMIAINPGRVAASFSQEA 1825
Query: 153 MSGI--KVGMGKGAL--IANPNCS--TIIC------LMAATPL-----HRRAKVTRMVVS 195
+ + +VG G L I N N + L T + ++ + + S
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 196 TYQAASGAGAAAMEELE 212
++EE+E
Sbjct: 1886 L----------SLEEVE 1892
Score = 40.4 bits (94), Expect = 0.001
Identities = 81/495 (16%), Positives = 148/495 (29%), Gaps = 160/495 (32%)
Query: 4 FSSHQTQTHFISKLPA--------NKPRTKP-------MFTRVRMSYQESAPSVAVVGVT 48
F + Q Q F LP ++P T + S E + V
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV---SSLVEPSKVGQFDQVL 84
Query: 49 GAVGQEFLS-VLSDRDFPYRSIKMLASK---RSAGKQLSFQD--KAY-TVEELTEDSFDG 101
EF + L D I LA+K + + ++ K Y T + + FD
Sbjct: 85 NLCLTEFENCYLEGND-----IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 102 V-DIALFSA------------GG------------SISKKFGPIAVEKGSIVVDNSSAFR 136
+ ALF A GG + + + + G ++ +
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV---GDLI---KFSAE 193
Query: 137 MVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN--------CST-----IICLMAATPL 183
+ + + G+ + + NP+ S +I ++
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNI----LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 184 HRRAKVTRM----VVSTYQAASGAG-----AAAM------EELELQTREVLEGKPPTCKI 228
AK+ + S + A+G A A+ E + R+ + +
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT------VL 303
Query: 229 F-----SQQYAFNLFSHNAPVLENGYNEEE-----M------------KMVKETRK-IWN 265
F + A+ S +LE+ E M V +T +
Sbjct: 304 FFIGVRCYE-AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 266 DKDVRV----TATCIRVPVMRAHAES---VNLQFEK---PLDEDTARDILKNAPGVVVID 315
K V + A + V+ +S +NL K P D +R P
Sbjct: 363 GKQVEISLVNGAKNL---VVSGPPQSLYGLNLTLRKAKAPSGLDQSR-----IPF----S 410
Query: 316 DRA---SNHF-----P--TPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFV----CGDQVR 361
+R SN F P + L V D + ++ +VS + + I V G +R
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD-IQIPVYDTFDGSDLR 469
Query: 362 KGAALNAVQIAEMLL 376
+ + +I + ++
Sbjct: 470 VLSGSISERIVDCII 484
Score = 35.0 bits (80), Expect = 0.040
Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 51/160 (31%)
Query: 29 TRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA 88
+R+ S E + FL V S P+ S ++ + K L + +
Sbjct: 405 SRIPFS--ERKLKFSN---------RFLPVAS----PFHSHLLVPASDLINKDLVKNNVS 449
Query: 89 YTVEELT---EDSFDGVDIALFSAGGSISKK-------------------------FGPI 120
+ +++ D+FDG D+ + S GSIS++ FGP
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLS--GSISERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 121 AVEK-GSIVVDNS--SAFRMVENVPLVIPEVNPEAMSGIK 157
G + N + R++ L ++NP+ G K
Sbjct: 508 GASGLGVLTHRNKDGTGVRVIVAGTL---DINPDDDYGFK 544
Score = 31.2 bits (70), Expect = 0.80
Identities = 45/255 (17%), Positives = 77/255 (30%), Gaps = 80/255 (31%)
Query: 155 GI-KVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELEL 213
G + GMG L++ +K + V + A +
Sbjct: 1625 GSQEQGMGMD-------------------LYKTSKAAQDVWNR------ADNHFKDTYGF 1659
Query: 214 QTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKET--------RKIWN 265
+++ P I H E M+ ET KI+
Sbjct: 1660 SILDIVINNPVNLTI-----------HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 266 DKDVRVTATCIRVPVMRAHAESVNL-QFEKP---LDEDTARDILKNAPGVVVIDDRASNH 321
+ + T+ R ++ QF +P L E A + LK+ G++ D + H
Sbjct: 1709 EINEHSTSYTFRSE-----KGLLSATQFTQPALTLMEKAAFEDLKSK-GLIPADATFAGH 1762
Query: 322 FPTPL-E----VSN------KDDVAVGRIR---------RDVSQDGNHGLDIFVCGDQVR 361
L E S + V V R RD N+G+ I + +V
Sbjct: 1763 ---SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-IAINPGRVA 1818
Query: 362 KGAALNAVQ-IAEML 375
+ A+Q + E +
Sbjct: 1819 ASFSQEALQYVVERV 1833
Score = 27.7 bits (61), Expect = 7.9
Identities = 21/166 (12%), Positives = 37/166 (22%), Gaps = 43/166 (25%)
Query: 181 TPLHRRAKVTR-MVVSTYQAASGAGAAAME---ELELQTREVLEGKPPTCKIF----SQQ 232
T A + + AA E EL + F S
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK------------FLGYVSSL 71
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQF 292
+ VL E E D+ HA + L
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFE-------NCYLEGNDI--------------HALAAKLLQ 110
Query: 293 EKPLDEDTARDILKNAPGVVVIDDRASNHFPTP--LEVSNKDDVAV 336
E ++++KN ++ R + + + +
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 38.2 bits (89), Expect = 0.004
Identities = 32/277 (11%), Positives = 82/277 (29%), Gaps = 41/277 (14%)
Query: 84 FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPL 143
F+D VE D + DI + A I K+ + + + +
Sbjct: 64 FEDAGIPVEGTILDIIEDADIVVDGAPKKIGKQNLENIYKPHKVKAILQGGEKAKDVEDN 123
Query: 144 VIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGA 203
+ G + +C+T ++ A + + + + A
Sbjct: 124 FNALWSYNRCYGKDY-------VRVVSCNTTGLCRILYAINSIADIKKARIVLVRRA--- 173
Query: 204 GAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
A ++ + SH+ + +
Sbjct: 174 -ADPNDDKTGPVNAITPNPVTVP------------SHHG---------------PDVVSV 205
Query: 264 WNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFP 323
+ + ++ + + VP H ++ ++ + + D + +K P ++ +
Sbjct: 206 VPEFEGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRIITV-RAEDGFSS 264
Query: 324 TPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQV 360
T + D +GR+R D+++ I V +++
Sbjct: 265 TAKIIEYGRD--LGRLRYDINELVVWEESINVLENEI 299
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 36.7 bits (85), Expect = 0.009
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 268 DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLE 327
+ + VP H SV ++ +KPL +D DI +N V++ + T
Sbjct: 201 PINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEK-EKGFDSTAQI 259
Query: 328 VSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQV 360
+ D + R ++ + I + G+++
Sbjct: 260 IEFARD--LHREWNNLYEIAVWKESINIKGNRL 290
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.032
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 14/38 (36%)
Query: 8 QTQTHFISKLPANKPRTKPMFTRVRMSYQ-ESAPSVAV 44
+ Q + KL A K Y +SAP++A+
Sbjct: 18 EKQA--LKKLQA---SLKL--------YADDSAPALAI 42
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 34.1 bits (78), Expect = 0.048
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA------YTV 91
+ P+V V G +G GQ L + + + ++ RSA + +A T
Sbjct: 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV---RSAQGKEKIGGEADVFIGDITD 59
Query: 92 EELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGS 126
+ +F G+D + K G + G
Sbjct: 60 ADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGR 94
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 34.5 bits (79), Expect = 0.049
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 10/88 (11%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYR--------SIKMLASKRSAGKQLSF 84
M + + G TG +G + P +L +S G +
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVK 64
Query: 85 QDKAYTVEELTEDSFDGVDIALFSAGGS 112
+ E + VD+ + +
Sbjct: 65 GE--LDEHEKLVELMKKVDVVISALAFP 90
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 33.1 bits (76), Expect = 0.11
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 268 DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVID 315
D+ + + VP H +V ++ E+ D D+ ++ P V++I
Sbjct: 203 DINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVILIS 250
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 32.3 bits (74), Expect = 0.18
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-------DKAYTVEEL 94
+ +VG TG VG+ L LS D+ + R + + D +T EE+
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAG-----ARKVEQVPQYNNVKAVHFDVDWTPEEM 57
Query: 95 TEDSFDGVDIALFSAGG 111
G+D + +G
Sbjct: 58 -AKQLHGMDAIINVSGS 73
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 31.6 bits (72), Expect = 0.34
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS--- 98
V VVG G V + LS L ++ + + G +L + + V E+
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVA---MVRNEEQGPELRERGASDIVVANLEEDFSH 80
Query: 99 -FDGVDIALFSAG 110
F +D +F+AG
Sbjct: 81 AFASIDAVVFAAG 93
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 31.3 bits (71), Expect = 0.35
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 25 KPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF 84
+++R ++ SV ++G +G G+ L + ++ + + L +R
Sbjct: 4 TEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGL-FSKVT-LIGRRKLTFDEEA 61
Query: 85 QDKAYTVE------ELTEDSFDGVDIALFSAGGSISKKFG 118
+ +F G D F G+ K G
Sbjct: 62 YKNVNQEVVDFEKLDDYASAFQGHD-VGFCCLGTTRGKAG 100
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 30.2 bits (68), Expect = 1.1
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSI-------------KMLASKRSAG 79
M S + ++G TG +G+ D P + ++L S +++G
Sbjct: 1 MG---SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASG 57
Query: 80 KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113
+ ++ VD + S GS+
Sbjct: 58 ANIVHGS--IDDHASLVEAVKNVD-VVISTVGSL 88
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 29.9 bits (67), Expect = 1.3
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 18/89 (20%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFP------------YRSIKMLASKRSAGK 80
M V +VG TG +G+ ++ P ++ML + G
Sbjct: 1 MD---KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGA 57
Query: 81 QLSFQDKAYTVEELTEDSFDGVDIALFSA 109
+L + D+ VD + SA
Sbjct: 58 KLIEAS--LDDHQRLVDALKQVD-VVISA 83
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 29.7 bits (66), Expect = 1.3
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
V ++G GA+G+ L F I + R + V + E
Sbjct: 3 VGLIG-YGAIGKFLAEWLERNGF---EIAAILDVRG--------EHEKMVRGIDEFLQRE 50
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132
+D+A+ +A K + ++ G ++ S
Sbjct: 51 MDVAVEAASQQAVKDYAEKILKAGIDLIVLS 81
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 29.2 bits (66), Expect = 2.1
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-------EE 93
S+AV G TG +G + L + + I A R+ K + D+ V E
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQII---AIVRNVEKASTLADQGVEVRHGDYNQPE 58
Query: 94 LTEDSFDGVDIALF 107
+ +F GV LF
Sbjct: 59 SLQKAFAGVSKLLF 72
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 29.0 bits (65), Expect = 2.4
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYR 67
M+ Q+ ++AVVG TG G + V + R
Sbjct: 1 MAQQK--KTIAVVGATGRQGASLIRVAAAVGHHVR 33
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 28.8 bits (65), Expect = 2.4
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
V + G TG G+ L + + ++++ + + + EL
Sbjct: 8 VLLAGATGLTGEHLLDRILSEPT-LAKVIAP-ARKALAEHPRLDNPVGPLAELLPQLDGS 65
Query: 102 VDIALFSAGGSISKK 116
+D A G +I +
Sbjct: 66 IDTAFCCLGTTIKEA 80
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 28.6 bits (65), Expect = 3.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 288 VNLQFEKPLDEDTARDILKNAPGVVVIDD 316
VN +F KPLDE+ R++ A ++ ++D
Sbjct: 533 VNARFVKPLDEEMLREVGGRARALITVED 561
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 28.3 bits (63), Expect = 3.6
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 38 SAPSVAVVGVTGAVGQEFLSVL--------------SDRDFPYRSIKMLASKRSAGKQLS 83
+ + ++G TGA+G+ + P +++ + +S G L
Sbjct: 1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
Query: 84 FQDKAYTVEELTEDSFDGVDIALFSAGGS 112
D E + VD + A G
Sbjct: 61 EGD--INDHETLVKAIKQVD-IVICAAGR 86
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 28.6 bits (65), Expect = 4.0
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 288 VNLQFEKPLDEDTARDILKNAPGVVVIDD 316
V+++F KPLDE ++ + +V +++
Sbjct: 530 VDMRFVKPLDEALILEMAASHEALVTVEE 558
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 27.7 bits (62), Expect = 5.5
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKRSAGKQLSFQDKAYTVEELTED 97
+A+ G TG G L+ + R L S+ + D ++ +
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGD-VLQAADV-DK 63
Query: 98 SFDGVDIALFSAGGS 112
+ G D + G
Sbjct: 64 TVAGQDAVIVLLGTR 78
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 27.7 bits (61), Expect = 6.2
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
V + G TG +GQ + D P + + + ++ +
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAI 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.371
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,677,133
Number of extensions: 356573
Number of successful extensions: 919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 54
Length of query: 376
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 281
Effective length of database: 4,049,298
Effective search space: 1137852738
Effective search space used: 1137852738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)