RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017153
(376 letters)
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 221
Score = 201 bits (513), Expect = 4e-64
Identities = 58/223 (26%), Positives = 84/223 (37%), Gaps = 31/223 (13%)
Query: 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVL---------- 219
NC+ + LM+ L V + V+TYQAASG GA M EL Q +
Sbjct: 1 NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATP 60
Query: 220 ---------------EGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
F A +L L+NG + EE K ET KI
Sbjct: 61 SSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKIL 120
Query: 265 -NDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASN 320
+ V C+RV +R H+++ ++ +K + T ++L VV D +
Sbjct: 121 NTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITM 180
Query: 321 HFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKG 363
TP V+ VGR+R+ L F GDQ+ G
Sbjct: 181 RELTPAAVTGTLTTPVGRLRKLNMGP--EFLSAFTVGDQLLWG 221
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 196 bits (500), Expect = 3e-62
Identities = 60/224 (26%), Positives = 91/224 (40%), Gaps = 32/224 (14%)
Query: 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTR------------- 216
NC+ + LMA L+ R V M TYQAASGAGA M EL Q
Sbjct: 1 NCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANP 60
Query: 217 ------------EVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
E + F A +L +NG ++EE K E KI
Sbjct: 61 ASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKIL 120
Query: 265 --NDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDD---RAS 319
D V + TC+R+ MR H++++ ++ ++ + D +++ V + +
Sbjct: 121 GLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIEEMIATHNDWVKVIPNERDIT 180
Query: 320 NHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKG 363
TP +V+ V VGR+R+ D L+ F GDQ+ G
Sbjct: 181 ARELTPAKVTGTLSVPVGRLRKMAMGD--DFLNAFTVGDQLLWG 222
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 202
Score = 190 bits (483), Expect = 8e-60
Identities = 71/204 (34%), Positives = 107/204 (52%), Gaps = 13/204 (6%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGK-------- 222
CSTI ++A P+ ++ + R++VSTYQA SGAG A+ E + + REVL
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHA 60
Query: 223 ---PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVP 279
P AFN +N Y EEMKM KET+KI D + V+ATC+R+P
Sbjct: 61 EILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIP 120
Query: 280 VMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRI 339
V+ AH+ESV ++ ++ + + + PG V+ DD A +P + D VGRI
Sbjct: 121 VLSAHSESVYIETKEVAPIEEVKAAIAAFPGAVLEDDVAHQIYPQAINAVGSRDTFVGRI 180
Query: 340 RRDVSQDGNHGLDIFVCGDQVRKG 363
R+D+ + G+ ++V D + KG
Sbjct: 181 RKDLDAE--KGIHMWVVSDNLLKG 202
>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 190
Score = 183 bits (465), Expect = 2e-57
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 5/194 (2%)
Query: 171 CSTIICL-MAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIF 229
C+ L PL ++ ++ + S G ++EL QT E+L +P ++F
Sbjct: 1 CAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLF 60
Query: 230 SQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVN 289
+Q AFNL + V G++ E ++ E + + ++ + TCI+ PV + SV
Sbjct: 61 DRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVT 120
Query: 290 LQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNH 349
LQ +P+D +L G+ + + ++ + +D+ VGR+R +
Sbjct: 121 LQCAEPVDLAAVTRVLDATKGIEWVGEG--DYPTVVGDALGQDETYVGRVRAGQADP--C 176
Query: 350 GLDIFVCGDQVRKG 363
+++++ D VRKG
Sbjct: 177 QVNLWIVSDNVRKG 190
>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 154
Score = 123 bits (308), Expect = 1e-34
Identities = 72/157 (45%), Positives = 94/157 (59%), Gaps = 7/157 (4%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVG + + +L + P I+ LAS RSAGK L F+D+ T+EE TE +F+G
Sbjct: 4 VAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEG 63
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
VDIALFSAG S S K+ P AV+ G +VVDN+S FR +VPLV+PEVN A+
Sbjct: 64 VDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHAL------DA 117
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198
+IA PN + +A LH R V ++
Sbjct: 118 HNGIIACPNAAWNSVQIAE-TLHERGLVRPTAELKFE 153
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 147
Score = 119 bits (300), Expect = 2e-33
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 42 VAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSF 99
V +VG G VG + + + RDF ++ + +F A + + +S
Sbjct: 3 VGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESL 62
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157
+D + GGS ++K P + G +D +S RM + + + VN + I
Sbjct: 63 KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQ---IL 119
Query: 158 VGMGKG-----ALIANPNCSTIICLMA 179
G+ G A P T+ ++A
Sbjct: 120 HGIHHGTKTFVGGAAEPLRRTLRIILA 146
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 115 bits (289), Expect = 1e-31
Identities = 22/190 (11%), Positives = 54/190 (28%), Gaps = 40/190 (21%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS 230
C+T + + + A V+ A
Sbjct: 2 CNTTGLVRTLSAIREYADYVYAVMIRRAADPN-------------------------DTK 36
Query: 231 QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNL 290
+ + ++ +++ + + VP H SV +
Sbjct: 37 RGPINAIKPTVE---VPSHHGPDVQT---------VIPINIETMAFVVPTTLMHVHSVMV 84
Query: 291 QFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHG 350
+ +KPL +D DI +N V++ + + +D + R ++ +
Sbjct: 85 ELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARD---LHREWNNLYEIAVWK 141
Query: 351 LDIFVCGDQV 360
I + G+++
Sbjct: 142 ESINIKGNRL 151
>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 144
Score = 113 bits (283), Expect = 4e-31
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TG+VG+ + +L +RDFP + +LAS SAG+++ F + + V ++ F
Sbjct: 5 VAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSS 64
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V +A F+A +S+ A G V+D S A P V+ VN E ++
Sbjct: 65 VGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEP-SVAPPVMVSVNAERLASQA---- 119
Query: 162 KGALIANPNCSTIICLMAATPLH 184
L+++P + L H
Sbjct: 120 APFLLSSPAALNAVLLGELLIKH 142
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 109 bits (275), Expect = 1e-29
Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 37/190 (19%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS 230
C+T PLH + ++ + + +
Sbjct: 2 CNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPAQVSK---------------------- 39
Query: 231 QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNL 290
+ + + + + + + + + VP H +V +
Sbjct: 40 -GPINAIIPN--------PPKLPSHHGPDVKTVLDIN---IDTMAVIVPTTLMHQHNVMV 87
Query: 291 QFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHG 350
+ E+ D D+ ++ P V++I + K+ +GR R D+ +
Sbjct: 88 EVEETPTVDDIIDVFEDTPRVILISAEDGLTSTAEIMEYAKE---LGRSRNDLFEIPVWR 144
Query: 351 LDIFVCGDQV 360
I V +++
Sbjct: 145 ESITVVDNEI 154
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 107 bits (268), Expect = 1e-28
Identities = 23/190 (12%), Positives = 57/190 (30%), Gaps = 36/190 (18%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS 230
C+T L +++ +KV ++ + + A+ + +
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKEVKKGPI--------------NSLVP 46
Query: 231 QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNL 290
+++ + + P H +N+
Sbjct: 47 DPATVPSHHAKDVNSV-------------------IRNLDIATMAVIAPTTLMHMHFINI 87
Query: 291 QFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHG 350
+ +++ +L+N P +V+I + L +D + R R D+ +
Sbjct: 88 TLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARD---LKRDRNDIPEVMIFS 144
Query: 351 LDIFVCGDQV 360
I+V D+V
Sbjct: 145 DSIYVKDDEV 154
>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 146
Score = 105 bits (263), Expect = 4e-28
Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 42 VAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSF 99
V +G G VG + ++ +RDF ++ + SF T+++ + ++
Sbjct: 4 VGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL 63
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAM---- 153
+DI + GG + + P E G +D +S+ RM ++ +++ VN + +
Sbjct: 64 KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGL 123
Query: 154 -SGIKVGMGKGALIANPNCSTI 174
+GI+ +G A P +
Sbjct: 124 NNGIRTFVGG---AAEPLRRML 142
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde
dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Length = 183
Score = 80.0 bits (196), Expect = 2e-18
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 19/175 (10%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT------ 95
+AV+G +G G E + +L++ P IK++ + R AG+Q ++L
Sbjct: 8 IAVLGASGYTGAEIVRLLANH--PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVK 65
Query: 96 EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+ F VD +++ ++ IV ++ N + A
Sbjct: 66 DADFSNVDAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSHRAPEL 125
Query: 156 IKVGMG-----------KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQA 199
+ + L+ANP A L+ + YQ
Sbjct: 126 QQEAVYGLTEVLRNEIRNARLVANPGLVKGASGQAVQNLNLMMGLPENTGLQYQP 180
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 76.7 bits (188), Expect = 2e-17
Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA-------YTVEEL 94
VA++G +G +G + + + R+ Y + + +A L+ + +
Sbjct: 7 VAIIG-SGNIGTDLMIKV-LRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLI 64
Query: 95 TEDSFDGVDIALF--SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
F +D SA + + + G ++D + A P +P VN E
Sbjct: 65 KLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPA----AIGPYCVPVVNLEE 120
Query: 153 MSGIK-VGMGKGALIANPNCSTIICLMAATPLHRRAK 188
G V M + I+ A R A+
Sbjct: 121 HLGKLNVNM-----VTYAGNLDIMTSAALATAERMAQ 152
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 76.4 bits (187), Expect = 3e-17
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 42/190 (22%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK-----AYTVEELTE 96
++G TG G E + +L + P I L+S+ AGK+L + E E
Sbjct: 4 AGIIGATGYTGLELVRLLKN--HPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 61
Query: 97 DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE----------------- 139
D+ + S + KG ++D + FR +
Sbjct: 62 KVSKNCDVLFTALPAGASYDL--VRELKGVKIIDLGADFRFDDPGVYREWYGKELSGYEN 119
Query: 140 -NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198
+PE++ E + + ++ NP A ++ +
Sbjct: 120 IKRVYGLPELHREEIKNAQ-------VVGNPGLVKGASGQAVQNMNIMFGL--------D 164
Query: 199 AASGAGAAAM 208
G +
Sbjct: 165 ETKGLEFTPI 174
>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Salmonella typhimurium [TaxId: 90371]}
Length = 179
Score = 65.5 bits (158), Expect = 3e-13
Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 21/169 (12%)
Query: 42 VAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGK--------QLSFQDKAYTVE 92
+VG +G G E +S ++ ++ + A AGK D
Sbjct: 4 TLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM 63
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
D VD+ + +S P ++ G +V D S AFR+ +
Sbjct: 64 SDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQ 123
Query: 153 MSGIKVGMGKGA------------LIANPNCSTIICLMAATPLHRRAKV 189
+ G LIA P A + R
Sbjct: 124 YPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGF 172
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 144
Score = 30.3 bits (68), Expect = 0.17
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 10/118 (8%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-------KAYTVEEL 94
VAV+G +G +GQ +L + + + + G K Y E
Sbjct: 3 VAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 95 TEDSFDGVDIALFSAGGSISKKFGPIAVEK--GSIVVDNSSAFRMVENVPLVIPEVNP 150
D G D+ + AG + +IV ++A ++ NP
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119
>d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic
flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}
Length = 399
Score = 31.3 bits (70), Expect = 0.19
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 252 EEMKMVKETRKIWNDKDVRVTATCI 276
E++++K + W + D +++ C
Sbjct: 373 GELRIIKSVLQSWKNWDSHLSSICT 397
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 29.1 bits (64), Expect = 0.93
Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 15/176 (8%)
Query: 28 FTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRS----------IKMLASKRS 77
F+ + + P +AVVG A L RDF R ++++ S
Sbjct: 15 FSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTE 74
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRM 137
+ L + K +T E + + IS PI + S V N + +
Sbjct: 75 YAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPV--PINLRVYSPHVLNLTLVDL 132
Query: 138 VENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMV 193
+P + ++ + NC I+ + A + ++
Sbjct: 133 --PGMTKVPVGDQPPDIEFQIRDMLMQFVTKENC-LILAVSPANSDLANSDALKIA 185
>d1v1oa1 b.40.2.2 (A:18-108) Exotoxin 1 (SET1, Superantigen-like
protein 7) {Staphylococcus aureus [TaxId: 1280]}
Length = 91
Score = 27.0 bits (60), Expect = 1.4
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 345 QDGNHGLDIFVCGDQVRKGAALNAV 369
++G G ++FV + + L+ V
Sbjct: 60 KEGLQGQNVFVVQELIDPNGRLSTV 84
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 27.1 bits (60), Expect = 2.1
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 258 KETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA 308
K + + ++ +RVP + + EK + + LK A
Sbjct: 63 KAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAA 113
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 145
Score = 26.9 bits (59), Expect = 2.4
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQD-------KAYTVEE 93
VAV+G G +GQ +L + + + G + K ++ E+
Sbjct: 3 VAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED 62
Query: 94 LTEDSFDGVDIALFSAGGSISKKFGPIAV--EKGSIVVDNSSAFRMVENVPLVIPEVNP 150
T +G D+ L SAG + IV + + NP
Sbjct: 63 ATPA-LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 232
Score = 27.4 bits (59), Expect = 2.5
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 28 FTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYR 67
+++R ++ SV ++G +G G+ L + ++ +
Sbjct: 3 LSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSK 42
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240
(T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 252
Score = 27.1 bits (58), Expect = 3.8
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
P+V V G +G GQ L + + + RSA + +A
Sbjct: 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAK---GLVRSAQGKEKIGGEADVFI 53
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 128
Score = 26.1 bits (57), Expect = 4.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDF 64
+VG +G +GQE V S++
Sbjct: 3 YGIVGYSGRMGQEIQKVFSEKGH 25
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 141
Score = 25.4 bits (56), Expect = 7.0
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 70 KMLASKRSAGKQLSFQDKAYTVEELTEDSF---DGVDIALFSAGGSISKKFG-PIAVEKG 125
++ + GKQ S DK YTVE+ D+F D VD GS+SK G + G
Sbjct: 26 ALMFDRSFVGKQFSANDKVYTVEKA--DNFEYHDPVD-------GSVSKNQGLRLIFADG 76
Query: 126 SIVV 129
S ++
Sbjct: 77 SRII 80
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 26.1 bits (56), Expect = 7.5
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE 96
+ ++AVVG TG G + V + R+ A ++L +
Sbjct: 1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA-EELQAIPNVTLFQGPLL 59
Query: 97 DSFDGVDIALFSA 109
++ +D A
Sbjct: 60 NNVPLMDTLFEGA 72
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 25.6 bits (56), Expect = 7.9
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 262 KIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA 308
K+ + + ++T RVP + + EKP D + ++K A
Sbjct: 68 KVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQA 114
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525
{Helicobacter pylori [TaxId: 210]}
Length = 323
Score = 26.0 bits (56), Expect = 8.9
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 266 DKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP 325
DK ++ + + F L + +I N VV + P
Sbjct: 5 DKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPF- 63
Query: 326 LEVSNKDDVAVGRIRR 341
+V ++ ++ R+
Sbjct: 64 -DVRDRKAFSLSRLMH 78
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domains 2 and 5 {Streptomyces
antibioticus [TaxId: 1890]}
Length = 111
Score = 24.9 bits (54), Expect = 9.2
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 153 MSGIKVGMGKGALIANPN-----CSTIICLMAATPLHRRAKVTRMVVST--YQAASGAGA 205
+ G++V + +G +A P + ++A L MV + +
Sbjct: 5 IGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKD 64
Query: 206 AAMEELELQTREVLEG 221
A E L+
Sbjct: 65 GAEAPTEEVVAAGLDA 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.371
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,325,073
Number of extensions: 60514
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 31
Length of query: 376
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,213,086
Effective search space: 350581854
Effective search space used: 350581854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)