BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017154
(376 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255544688|ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
gi|223547313|gb|EEF48808.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
Length = 377
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 301/355 (84%), Positives = 325/355 (91%)
Query: 19 KPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY 78
KPKPWDEDPNID WK+EKFDP WNEGGMLEVSSFSTLFPQYREKYLQE WPMVK A+KEY
Sbjct: 17 KPKPWDEDPNIDRWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEVWPMVKSAIKEY 76
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
GV+CELNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL DEMQCDIIK
Sbjct: 77 GVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILHDEMQCDIIK 136
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
IGNLVR KERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR+IV
Sbjct: 137 IGNLVRKKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRKIV 196
Query: 199 EDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYT 258
EDC+QNK+HPVYHIKILM+KKELEKDPAL NENWDRFLPKFKKKNVK KVK KEKKPYT
Sbjct: 197 EDCIQNKLHPVYHIKILMMKKELEKDPALQNENWDRFLPKFKKKNVKHNKVKRKEKKPYT 256
Query: 259 PFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP 318
PFPP QPSK+D+ LESGEYFL+ +KK++KKWQEKQE+QAEKTAENKRKRD AF+PPEE
Sbjct: 257 PFPPEQQPSKVDRELESGEYFLNNQKKQAKKWQEKQERQAEKTAENKRKRDTAFVPPEEH 316
Query: 319 SRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKK 373
Q++ ++EDK NDVAA+A S+K+KAK K+ ENIN EEYIAASGE P KKK
Sbjct: 317 RDQDAGKSEDKNNDVAAIALSIKKKAKDFGKKNAVENINAEEYIAASGELPKKKK 371
>gi|356501320|ref|XP_003519473.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Glycine max]
Length = 389
Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust.
Identities = 298/365 (81%), Positives = 327/365 (89%), Gaps = 1/365 (0%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
K KGKHDKPKPWD+DPNIDHWK+EKFDP WN+GGMLEVSSFSTLFPQYREKYLQEAWPMV
Sbjct: 23 KRKGKHDKPKPWDDDPNIDHWKIEKFDPSWNDGGMLEVSSFSTLFPQYREKYLQEAWPMV 82
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
K ALKE+GV+CELNLVEGSMTVSTTRKTRDPYII+KARDLI+LLSRS+PAPQAIKILDDE
Sbjct: 83 KSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSLPAPQAIKILDDE 142
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
MQCDIIKI +VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL
Sbjct: 143 MQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 202
Query: 192 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 251
KQVRRIVE+CM NKMHPVY+IK+LM+KKELEKDPALA ENWDRFLPKFKKKNVKQKKV +
Sbjct: 203 KQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQKKVNT 262
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K+KKPYTPFPPP QPSKID LE+GEYFLS ++K +K WQEKQEKQAEKTAENKRKR+ A
Sbjct: 263 KQKKPYTPFPPPQQPSKIDIQLETGEYFLSNKRKSAKIWQEKQEKQAEKTAENKRKREEA 322
Query: 312 FIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSK 371
FIPP+EP+ ++ED ++VA MA SLK+K KK K+K ENIN E YI S E+ S
Sbjct: 323 FIPPKEPANLVD-KSEDANSNVADMAMSLKKKTKKFGKRKSEENINAETYIIGSSEQASG 381
Query: 372 KKKSK 376
KK K
Sbjct: 382 KKSKK 386
>gi|359807638|ref|NP_001241422.1| uncharacterized protein LOC100816856 [Glycine max]
gi|255639399|gb|ACU19995.1| unknown [Glycine max]
Length = 389
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 296/365 (81%), Positives = 327/365 (89%), Gaps = 1/365 (0%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
K KGKHDKPKPWD+DPNIDHWK++KFDP WN+GGMLEVSSFSTLFPQYREKYLQEAWPMV
Sbjct: 23 KRKGKHDKPKPWDDDPNIDHWKIDKFDPSWNDGGMLEVSSFSTLFPQYREKYLQEAWPMV 82
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
K +LKE+GV+CELNLVEGSMTVSTTRKTRDPYII+KARDLI+LLSRS+PAPQAIKILDDE
Sbjct: 83 KSSLKEFGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSIPAPQAIKILDDE 142
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
MQCDIIKI +VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL
Sbjct: 143 MQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 202
Query: 192 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 251
KQVRRIVE+CM NKMHPVY+IK+LM+KKELEKDPALA ENWDRFLPKFKKKNVKQKKV +
Sbjct: 203 KQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQKKVNT 262
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K+KKPYTPFPPP QPSKID LE+GEYFLS ++K +K WQEKQEKQAEKTAENKRKR+ A
Sbjct: 263 KQKKPYTPFPPPQQPSKIDIQLETGEYFLSNKRKSAKIWQEKQEKQAEKTAENKRKREEA 322
Query: 312 FIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSK 371
FIPP+EP+ ++ED N+VA MA SLK+K KK K+K ENI+ E YI S E+ S
Sbjct: 323 FIPPKEPANLVD-KSEDANNNVADMAISLKKKTKKFGKRKSEENIDAETYIVGSSEQASG 381
Query: 372 KKKSK 376
KK K
Sbjct: 382 KKPKK 386
>gi|224094246|ref|XP_002310107.1| predicted protein [Populus trichocarpa]
gi|222853010|gb|EEE90557.1| predicted protein [Populus trichocarpa]
Length = 379
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 291/370 (78%), Positives = 325/370 (87%), Gaps = 4/370 (1%)
Query: 4 NMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKY 63
++ T KHKGKHDKPKPWDEDPNID WK+EKFDP WN+GGM++VSSFSTLFP+YREKY
Sbjct: 10 DISNTKKPKHKGKHDKPKPWDEDPNIDRWKIEKFDPSWNQGGMVDVSSFSTLFPKYREKY 69
Query: 64 LQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123
L +AWPMVK ALKE+G+ CELN EGSMTV TT KTRDPYIIVKARDLI+LLSRSVPAPQ
Sbjct: 70 LTDAWPMVKSALKEFGIDCELNKNEGSMTVKTTIKTRDPYIIVKARDLIKLLSRSVPAPQ 129
Query: 124 AIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVA 183
AIKIL+D+M CDIIKIGN++RNKERFVKRRQ+LVGPNSSTLKALE+LTGCYILVQGNTVA
Sbjct: 130 AIKILNDDMSCDIIKIGNMIRNKERFVKRRQNLVGPNSSTLKALELLTGCYILVQGNTVA 189
Query: 184 AMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKN 243
AMGSFKGLKQVRRIVEDC+QNKMHPVYHIKILM+KKELEKDPAL NENWDRFLPK+KKK
Sbjct: 190 AMGSFKGLKQVRRIVEDCIQNKMHPVYHIKILMMKKELEKDPALKNENWDRFLPKYKKKT 249
Query: 244 VKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 303
VKQKKVKSK+KK TPFPPP QPS D LE+GEYFLS++KK++KKW EKQEKQ EKTAE
Sbjct: 250 VKQKKVKSKKKKQDTPFPPPQQPSMEDIQLETGEYFLSDKKKQAKKWHEKQEKQLEKTAE 309
Query: 304 NKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIA 363
NKRKRDAAF+PP+E + D DVAAMA SLK+KAK+ KQK EN+NPE+YIA
Sbjct: 310 NKRKRDAAFVPPKE----DPSTYADNNKDVAAMAMSLKKKAKEFGKQKSFENVNPEDYIA 365
Query: 364 ASGEKPSKKK 373
SGE+P KKK
Sbjct: 366 TSGEQPRKKK 375
>gi|357493549|ref|XP_003617063.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
gi|355518398|gb|AET00022.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
Length = 424
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/342 (81%), Positives = 307/342 (89%), Gaps = 1/342 (0%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSC 82
WD+DPNIDHWKVEKFDP WNE GMLEVSSFSTLFPQYREKYLQEAWP+VK +LKE+G+S
Sbjct: 69 WDDDPNIDHWKVEKFDPSWNESGMLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISA 128
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL 142
ELNLVEGSMTVSTTRKT+DPYIIVKARDLIRLLSRSVPAPQAIK+LDDEMQCDIIKI L
Sbjct: 129 ELNLVEGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGL 188
Query: 143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM 202
VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTV+ MGS+KGLKQVRRIVE+CM
Sbjct: 189 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSVMGSYKGLKQVRRIVEECM 248
Query: 203 QNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPP 262
NKMHPVY+IKILM+KKELEKDPALA ENWDRFLPKF KKNVKQKKV +K KKPYTPFPP
Sbjct: 249 LNKMHPVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKVNAKPKKPYTPFPP 308
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 322
P QPSK+D LE+GEYFLS++KK +KKWQE+Q +QAEKTAENKRKRD +F+PP+EP+
Sbjct: 309 PQQPSKVDIQLETGEYFLSDKKKSAKKWQERQVQQAEKTAENKRKRDESFVPPKEPANL- 367
Query: 323 SCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA 364
+ED +N+VA MA SLKEKA+K K+K ENIN E YI
Sbjct: 368 VGNSEDASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMG 409
>gi|218184655|gb|EEC67082.1| hypothetical protein OsI_33853 [Oryza sativa Indica Group]
Length = 395
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/361 (76%), Positives = 324/361 (89%), Gaps = 3/361 (0%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
+HKGKHDKPKPWD+DPNIDHWK+EKFDP WNEGGMLEVSSFSTLFPQYREKYLQEAWP+V
Sbjct: 25 RHKGKHDKPKPWDDDPNIDHWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPIV 84
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
KGALKE+GV+CELNLVEGSMTVSTTRKTRDPYIIVKA++LI+LLSRSVPAPQAIKIL+DE
Sbjct: 85 KGALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDE 144
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
M CDIIKIG+++RNKERFVKRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMGS+KGL
Sbjct: 145 MSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKGL 204
Query: 192 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 251
KQVRR+VEDC++N HPVYHIK L++K+EL K+PALANE+WDRFLPKFKKKNVKQKK +
Sbjct: 205 KQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQKKPIT 264
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
KEKKPYTPFPPP QPSKID LESGEYF+S++KK +KKWQEK EKQ+EK ENKRKR+AA
Sbjct: 265 KEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENKRKREAA 324
Query: 312 FIPPEEPSRQ--NSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-GEK 368
F+PP+E + S ++ +++A MAKSLK+KAK+LRK + EN+ E Y+A++ G +
Sbjct: 325 FVPPKEDTATPYESAKSTSNNDEIADMAKSLKKKAKELRKSEAQENVRLESYVASNEGSR 384
Query: 369 P 369
P
Sbjct: 385 P 385
>gi|388504376|gb|AFK40254.1| unknown [Medicago truncatula]
Length = 380
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/342 (81%), Positives = 307/342 (89%), Gaps = 1/342 (0%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSC 82
WD+DPNIDHWKVEKFDP WNE GMLEVSSFSTLFPQYREKYLQEAWP+VK +LKE+G+S
Sbjct: 25 WDDDPNIDHWKVEKFDPSWNESGMLEVSSFSTLFPQYREKYLQEAWPLVKSSLKEFGISA 84
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL 142
ELNLVEGSMTVSTTRKT+DPYIIVKARDLIRLLSRSVPAPQAIK+LDDEMQCDIIKI L
Sbjct: 85 ELNLVEGSMTVSTTRKTKDPYIIVKARDLIRLLSRSVPAPQAIKVLDDEMQCDIIKISGL 144
Query: 143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM 202
VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTV+ MGS+KGLKQVRRIVE+CM
Sbjct: 145 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVSVMGSYKGLKQVRRIVEECM 204
Query: 203 QNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPP 262
NKMHPVY+IKILM+KKELEKDPALA ENWDRFLPKF KKNVKQKKV +K KKPYTPFPP
Sbjct: 205 LNKMHPVYNIKILMMKKELEKDPALAQENWDRFLPKFNKKNVKQKKVNAKPKKPYTPFPP 264
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 322
P QPSK+D LE+GEYFLS++KK +KKWQE+Q +QAEKTAENKRKRD +F+PP+EP+
Sbjct: 265 PQQPSKVDIQLETGEYFLSDKKKSAKKWQERQVQQAEKTAENKRKRDESFVPPKEPANL- 323
Query: 323 SCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAA 364
+ED +N+VA MA SLKEKA+K K+K ENIN E YI
Sbjct: 324 VGNSEDASNNVAEMAMSLKEKARKFGKRKSEENINAETYIMG 365
>gi|115482288|ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group]
gi|31432429|gb|AAP54059.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza
sativa Japonica Group]
gi|113639346|dbj|BAF26651.1| Os10g0452800 [Oryza sativa Japonica Group]
gi|215687236|dbj|BAG91801.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222612935|gb|EEE51067.1| hypothetical protein OsJ_31745 [Oryza sativa Japonica Group]
Length = 395
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 275/361 (76%), Positives = 323/361 (89%), Gaps = 3/361 (0%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
+HKGKHDKPKPWD+DPNIDHWK+EKFDP WNEGGMLEVSSFSTLFPQYREKYLQEAWP+V
Sbjct: 25 RHKGKHDKPKPWDDDPNIDHWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPIV 84
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
KGALKE+GV+CELNLVEGSMTVSTTRKTRDPYIIVKA++LI+LLSRSVPAPQAIKIL+DE
Sbjct: 85 KGALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDE 144
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
M CDIIKIG+++RNKERFVKRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMGS+KGL
Sbjct: 145 MSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKGL 204
Query: 192 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 251
KQVRR+VEDC++N HPVYHIK L++K+EL K+PALANE+WDRFLPKFKKKNVKQKK +
Sbjct: 205 KQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQKKPIT 264
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
KEKKPYTPFPPP QPSKID LESGEYF+S++KK +KKWQEK EKQ+EK ENKRKR+AA
Sbjct: 265 KEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENKRKREAA 324
Query: 312 FIPPEEPSRQ--NSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-GEK 368
F+PP+E + S ++ +++A MAKSLK+KAK+ RK + EN+ E Y+A++ G +
Sbjct: 325 FVPPKEDTATPYESAKSTSNNDEIADMAKSLKKKAKEFRKSEAQENVRLESYVASNEGSR 384
Query: 369 P 369
P
Sbjct: 385 P 385
>gi|449493026|ref|XP_004159171.1| PREDICTED: KRR1 small subunit processome component homolog [Cucumis
sativus]
Length = 379
Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust.
Identities = 296/365 (81%), Positives = 328/365 (89%), Gaps = 1/365 (0%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
KHKGKHDKPKPWDEDPNID WKVEKFDP WNE GMLEVSSFSTLFP YREKYL++ WP+V
Sbjct: 13 KHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEAGMLEVSSFSTLFPVYREKYLRDTWPVV 72
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
K ALKE+G+ ELNL+EGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKILDDE
Sbjct: 73 KSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDE 132
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
MQCDIIKIGNLVR KERFVKRR+ LVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL
Sbjct: 133 MQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 192
Query: 192 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 251
KQVRR+VE+CM NKMHPVY+IKILM++KEL DPALANENWDRFLPKFKKK VKQKKVKS
Sbjct: 193 KQVRRVVEECMMNKMHPVYNIKILMMRKELANDPALANENWDRFLPKFKKKTVKQKKVKS 252
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP QPS+ID LE+GEYFL+E+KK +KKWQ+KQEKQAEKTA+NKRKR+AA
Sbjct: 253 KPKKQYTPFPPPQQPSQIDIQLETGEYFLNEKKKSAKKWQDKQEKQAEKTADNKRKREAA 312
Query: 312 FIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSK 371
F+PP+E +Q++ DK ND+A MAKSLKEKAK K+K AE INPE YIA+S ++P
Sbjct: 313 FVPPKEAPKQDTKPDGDK-NDIAEMAKSLKEKAKAFGKRKAAETINPEAYIASSSDRPLF 371
Query: 372 KKKSK 376
KK+SK
Sbjct: 372 KKRSK 376
>gi|296083097|emb|CBI22501.3| unnamed protein product [Vitis vinifera]
Length = 424
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 299/369 (81%), Positives = 326/369 (88%), Gaps = 9/369 (2%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYL 64
+E+ KHKGKHDKPKPWD DP+IDHWKV+KFDP WNEGGMLEVSSFSTLFPQYREKYL
Sbjct: 48 VERKEKTKHKGKHDKPKPWD-DPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYL 106
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
QEAWP V+GALKE+GV ELNLVEG MTVSTTRKTRDPYII+KARDLI+LLSRSVPAPQA
Sbjct: 107 QEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQA 166
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA 184
IKIL+DEMQCDIIKIG+LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA
Sbjct: 167 IKILNDEMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA 226
Query: 185 MGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 244
MGSFKGLKQVRR+VEDC+QNKMHPVYHIK LM+K+EL DPAL NENWDRFLPKFKKKNV
Sbjct: 227 MGSFKGLKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNV 286
Query: 245 KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK----QEKQAEK 300
KQKKVKSKEKKPYTPFPPP PSK+D LESGEYFLS++KK +KKWQ+K EK
Sbjct: 287 KQKKVKSKEKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQA----EK 342
Query: 301 TAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEE 360
TAENKRKR+AAF+PP EP Q+ ++ D NDVAAMA SLK+KAK+ KQK EN+NPE
Sbjct: 343 TAENKRKREAAFVPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPET 402
Query: 361 YIAASGEKP 369
YIAASGE P
Sbjct: 403 YIAASGEAP 411
>gi|225429319|ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis
vinifera]
Length = 386
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 299/369 (81%), Positives = 326/369 (88%), Gaps = 9/369 (2%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYL 64
+E+ KHKGKHDKPKPWD DP+IDHWKV+KFDP WNEGGMLEVSSFSTLFPQYREKYL
Sbjct: 10 VERKEKTKHKGKHDKPKPWD-DPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYL 68
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
QEAWP V+GALKE+GV ELNLVEG MTVSTTRKTRDPYII+KARDLI+LLSRSVPAPQA
Sbjct: 69 QEAWPTVRGALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQA 128
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA 184
IKIL+DEMQCDIIKIG+LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA
Sbjct: 129 IKILNDEMQCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA 188
Query: 185 MGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 244
MGSFKGLKQVRR+VEDC+QNKMHPVYHIK LM+K+EL DPAL NENWDRFLPKFKKKNV
Sbjct: 189 MGSFKGLKQVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNV 248
Query: 245 KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK----QEKQAEK 300
KQKKVKSKEKKPYTPFPPP PSK+D LESGEYFLS++KK +KKWQ+K EK
Sbjct: 249 KQKKVKSKEKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQA----EK 304
Query: 301 TAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEE 360
TAENKRKR+AAF+PP EP Q+ ++ D NDVAAMA SLK+KAK+ KQK EN+NPE
Sbjct: 305 TAENKRKREAAFVPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPET 364
Query: 361 YIAASGEKP 369
YIAASGE P
Sbjct: 365 YIAASGEAP 373
>gi|414880761|tpg|DAA57892.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea mays]
Length = 391
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 272/364 (74%), Positives = 320/364 (87%), Gaps = 8/364 (2%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWP 69
N + KGKHDKPKPWDEDPNID WK++KFDP WNEGGMLEVSSFSTLFPQYREKYLQEAWP
Sbjct: 17 NWRRKGKHDKPKPWDEDPNIDRWKIDKFDPAWNEGGMLEVSSFSTLFPQYREKYLQEAWP 76
Query: 70 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129
+VKGALKEYG+SCELNLVEGSMTVSTTRKTRDP+ I+KAR+LI+LLSRSVPAPQAIKILD
Sbjct: 77 VVKGALKEYGISCELNLVEGSMTVSTTRKTRDPFAIIKARELIKLLSRSVPAPQAIKILD 136
Query: 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF- 188
DEM CDIIKIG LVRNKERFVKRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMG++
Sbjct: 137 DEMNCDIIKIGGLVRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGNYR 196
Query: 189 -KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 247
+GLKQVRRIVEDCM+N HPVYHIK L++K+EL K+PALANENWDRFLPKFKKKNVKQK
Sbjct: 197 GRGLKQVRRIVEDCMKNVKHPVYHIKELLIKRELAKNPALANENWDRFLPKFKKKNVKQK 256
Query: 248 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 307
K ++KEKKPYTPFPPP QPSKID LE+GEYF+S++KK +KKWQEK +KQ+ + ENKRK
Sbjct: 257 KPQTKEKKPYTPFPPPQQPSKIDLELENGEYFMSDKKKSAKKWQEKLDKQSGRAEENKRK 316
Query: 308 RDAAFIPPEE----PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIA 363
R+AAF+PP+E PS+ + +++ +++A +AKSLK KAK+ RK + E++ E YIA
Sbjct: 317 REAAFVPPKENTAGPSKSDKNASDN--SEIADIAKSLKRKAKEFRKNEAQESVIAESYIA 374
Query: 364 ASGE 367
++ E
Sbjct: 375 SNDE 378
>gi|357136153|ref|XP_003569670.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Brachypodium
distachyon]
Length = 393
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 267/360 (74%), Positives = 308/360 (85%), Gaps = 2/360 (0%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWP 69
N + KGKHDK KPWD DP ID WKVE+FDP WNEGGMLEV+SFSTLFPQYREKYLQEAWP
Sbjct: 22 NWRRKGKHDKDKPWDNDPTIDRWKVERFDPSWNEGGMLEVTSFSTLFPQYREKYLQEAWP 81
Query: 70 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129
VKGALKE+G++CELNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIK+L+
Sbjct: 82 TVKGALKEFGITCELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKVLN 141
Query: 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 189
DEM CDI+KIG+++RNKERFVKRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMGSFK
Sbjct: 142 DEMNCDIVKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSFK 201
Query: 190 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 249
GLKQVRRIVEDC++N HPVYHIK L++K+EL K+PALA E+WDRFLP FKKKNVKQKK
Sbjct: 202 GLKQVRRIVEDCIKNIKHPVYHIKELLIKRELAKNPALATESWDRFLPNFKKKNVKQKKP 261
Query: 250 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD 309
+KEKKPYTPFPPP QPSKID LESGEYF+S++KK +KKWQEK +KQ+EK E KRKR+
Sbjct: 262 NTKEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLDKQSEKMEEKKRKRE 321
Query: 310 AAFIPPEEPSR--QNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGE 367
AAF+PP+E S S + N++A + KSLK KAKK R + EN+ + YIA + E
Sbjct: 322 AAFVPPKENSAGPSESAKPTHAKNEIADITKSLKNKAKKFRNSEAQENVKVDSYIATNEE 381
>gi|297806883|ref|XP_002871325.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
lyrata]
gi|297317162|gb|EFH47584.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
lyrata]
Length = 391
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 292/379 (77%), Positives = 328/379 (86%), Gaps = 7/379 (1%)
Query: 3 ENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREK 62
+N+EK V + KGKHDKPKPWD+DPNID W +EKFDP WN GMLE SSFSTLFPQYREK
Sbjct: 12 QNIEKRV--RQKGKHDKPKPWDDDPNIDRWTIEKFDPAWNPTGMLETSSFSTLFPQYREK 69
Query: 63 YLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122
YLQE+WP V+ ALKEYGV+C+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAP
Sbjct: 70 YLQESWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAP 129
Query: 123 QAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTV 182
QAIKIL+DEMQCDIIKIG+LVRNK+RFVKRRQ LVGPNSSTLKALEILT CYILVQG+TV
Sbjct: 130 QAIKILEDEMQCDIIKIGSLVRNKQRFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTV 189
Query: 183 AAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK 242
AAMG FKGLKQ+RRIVEDC+QNKMHPVYHIK LM+KKELEKDPALANE+WDRFLP F+KK
Sbjct: 190 AAMGPFKGLKQLRRIVEDCVQNKMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKK 249
Query: 243 NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 302
NVKQKK KSKEKKPYTPFPPP PSKID LESGEYF+S++KK KKW EKQEKQ EK+
Sbjct: 250 NVKQKKPKSKEKKPYTPFPPPQPPSKIDMQLESGEYFMSDKKKSEKKWLEKQEKQTEKST 309
Query: 303 ENKRKRDAAFIPPEEPSRQNS--CEAEDKTNDVAAMAKSLKEKAKKLRKQKFA-ENINPE 359
ENKRKRDA+F+PPEEP NS +ED ND+ + +SLK K K+L+KQK E +N E
Sbjct: 310 ENKRKRDASFLPPEEPMNNNSKANNSEDGKNDITELTQSLKSKTKELKKQKKTHERVNAE 369
Query: 360 EYIA--ASGEKPSKKKKSK 376
EYIA +S +KP+K+K K
Sbjct: 370 EYIAGPSSIDKPAKEKSKK 388
>gi|449444252|ref|XP_004139889.1| PREDICTED: KRR1 small subunit processome component homolog [Cucumis
sativus]
Length = 350
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 277/348 (79%), Positives = 310/348 (89%), Gaps = 1/348 (0%)
Query: 29 IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVE 88
+ WKVEKFDP WNE GMLEVSSFSTLFP YREKYL++ WP+VK ALKE+G+ ELNL+E
Sbjct: 1 MTSWKVEKFDPSWNEAGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGIVGELNLIE 60
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
GSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKILDDEMQCDIIKIGNLVR KER
Sbjct: 61 GSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRKKER 120
Query: 149 FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
FVKRR+ LVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR+VE+CM NKMHP
Sbjct: 121 FVKRRRLLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRVVEECMMNKMHP 180
Query: 209 VYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSK 268
VY+IKILM++KEL DPALANENWDRFLPKFKKK VKQKKVKSK KK YTPFPPP QPS+
Sbjct: 181 VYNIKILMMRKELANDPALANENWDRFLPKFKKKTVKQKKVKSKPKKQYTPFPPPQQPSQ 240
Query: 269 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 328
ID LE+GEYFL+E+KK +KKWQ+KQEKQAEKTA+NKRKR+AAF+PP+E +Q++ D
Sbjct: 241 IDIQLETGEYFLNEKKKSAKKWQDKQEKQAEKTADNKRKREAAFVPPKEAPKQDTKPDGD 300
Query: 329 KTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK 376
K ND+A MAKSLKEKAK K+K AE INPE YIA+S ++P KK+SK
Sbjct: 301 K-NDIAEMAKSLKEKAKAFGKRKAAETINPEAYIASSSDRPLFKKRSK 347
>gi|56785318|dbj|BAD82278.1| rev protein (42.9 kD)-like [Oryza sativa Japonica Group]
gi|125571797|gb|EAZ13312.1| hypothetical protein OsJ_03235 [Oryza sativa Japonica Group]
Length = 421
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 263/394 (66%), Positives = 316/394 (80%), Gaps = 31/394 (7%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR----------- 60
+HKGKHDKPKPWD+DPNIDHWK+E+FDP WNEGGMLEV+SFSTLFPQYR
Sbjct: 20 RHKGKHDKPKPWDDDPNIDHWKIEEFDPSWNEGGMLEVTSFSTLFPQYRGKSPHPTPPSA 79
Query: 61 -----------------EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPY 103
+KYLQEAWP+VKGALKE+GV+CELNLVEGSMTVSTTRKT+DPY
Sbjct: 80 LSWFLPRSAIDWFCLVVKKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPY 139
Query: 104 IIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSST 163
II+KA +LI+LLSRSVPAPQAIKIL+DEM C IIKIG+++RNKERFVKRR L+GPN ST
Sbjct: 140 IIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLST 199
Query: 164 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEK 223
LKA+EILTGCYILVQGNT AAMG +KGLKQV R+VEDC++N HPVYHIK L++K+EL K
Sbjct: 200 LKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDCIKNVKHPVYHIKELLIKRELVK 259
Query: 224 DPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSER 283
+PALA+E+WD+FLPKFKKKNVKQKK +KEKK YTPFPPP QPSKID LESGE F+S++
Sbjct: 260 NPALAHESWDKFLPKFKKKNVKQKKPLTKEKKQYTPFPPPQQPSKIDLELESGECFMSDK 319
Query: 284 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLK 341
KK +K+WQEK EKQ++K ENKRKR+AAF+ P E + S ++ ++A MAKSLK
Sbjct: 320 KKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATPYESAKSIINNGEIADMAKSLK 379
Query: 342 EKAKKLRKQKFAENINPEEYIAAS-GEKPSKKKK 374
+KAK+LRK + EN+ E Y+A++ G +P KK K
Sbjct: 380 KKAKELRKNEEQENVRLESYVASNEGSRPKKKHK 413
>gi|242054199|ref|XP_002456245.1| hypothetical protein SORBIDRAFT_03g032750 [Sorghum bicolor]
gi|241928220|gb|EES01365.1| hypothetical protein SORBIDRAFT_03g032750 [Sorghum bicolor]
Length = 351
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 250/306 (81%), Positives = 280/306 (91%), Gaps = 2/306 (0%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWP 69
N + KGKHDKPKPWDEDPNID WK+EKFDP WNEGGMLEVSSFSTLFPQYREKYLQEAWP
Sbjct: 24 NWRRKGKHDKPKPWDEDPNIDRWKIEKFDPAWNEGGMLEVSSFSTLFPQYREKYLQEAWP 83
Query: 70 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129
+VKGALKEYG+SCELNLVEGSMTVSTTRKTRDP+IIVKAR+LI+LLSRSVPAPQAIKILD
Sbjct: 84 LVKGALKEYGISCELNLVEGSMTVSTTRKTRDPFIIVKARELIKLLSRSVPAPQAIKILD 143
Query: 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF- 188
DEM CDIIKIG LVRNKERFVKRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMG++
Sbjct: 144 DEMNCDIIKIGGLVRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGNYR 203
Query: 189 -KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 247
+GLKQVRRIVEDCM+N HPVYHIK L++K+EL K+PALA E+WDRFLPKFKKKNVKQK
Sbjct: 204 GRGLKQVRRIVEDCMKNVKHPVYHIKELLIKRELAKNPALATESWDRFLPKFKKKNVKQK 263
Query: 248 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 307
K ++KEKKPYTPFPPP QPSKID LE+GEYF+S++KK +KKWQEK EKQ+ + ENKRK
Sbjct: 264 KPQTKEKKPYTPFPPPQQPSKIDLELENGEYFMSDKKKSAKKWQEKLEKQSGRAEENKRK 323
Query: 308 RDAAFI 313
R+ F+
Sbjct: 324 RETFFV 329
>gi|125527474|gb|EAY75588.1| hypothetical protein OsI_03494 [Oryza sativa Indica Group]
Length = 421
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 262/394 (66%), Positives = 315/394 (79%), Gaps = 31/394 (7%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR----------- 60
+HKGKHDKPKPWD+DPNIDHWK+E+FDP WNEGGMLEV+SFSTLFPQYR
Sbjct: 20 RHKGKHDKPKPWDDDPNIDHWKIEEFDPSWNEGGMLEVTSFSTLFPQYRGKSPHPTPPSA 79
Query: 61 -----------------EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPY 103
+KYLQEAWP+VKGALKE+GV+CELNLVEGSMTVSTTRKT+DPY
Sbjct: 80 LSWFLPRSAIDWFCLVVKKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPY 139
Query: 104 IIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSST 163
II+KA +LI+LLSRSVPAPQAIKIL+DEM C IIKIG+++RNKERFVKRR L+GPN ST
Sbjct: 140 IIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLST 199
Query: 164 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEK 223
LKA+EILTGCYILVQGNT AAMG +KGLKQV R+VEDC++N HPVYHIK L++K+EL K
Sbjct: 200 LKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDCIKNVKHPVYHIKELLIKRELAK 259
Query: 224 DPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSER 283
+PALA+E+WD+FLPKFKKKNVKQKK +KEKK YTPFPPP QPSKID LESGE F+S++
Sbjct: 260 NPALAHESWDKFLPKFKKKNVKQKKPLTKEKKQYTPFPPPQQPSKIDLELESGECFMSDK 319
Query: 284 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLK 341
KK +K+WQEK EKQ++K ENKRKR+AAF+ P E + S ++ ++A M KSLK
Sbjct: 320 KKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATPYESAKSIINNGEIADMEKSLK 379
Query: 342 EKAKKLRKQKFAENINPEEYIAAS-GEKPSKKKK 374
+KAK+LRK + EN+ E Y+A++ G +P KK K
Sbjct: 380 KKAKELRKNEEQENVRLESYVASNEGSRPKKKHK 413
>gi|15241622|ref|NP_196459.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|13878039|gb|AAK44097.1|AF370282_1 putative rev interacting protein mis3 [Arabidopsis thaliana]
gi|10178284|emb|CAC08342.1| rev interacting protein mis3-like [Arabidopsis thaliana]
gi|23296614|gb|AAN13132.1| putative rev interacting protein mis3 [Arabidopsis thaliana]
gi|332003916|gb|AED91299.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 391
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 273/346 (78%), Positives = 302/346 (87%), Gaps = 3/346 (0%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD+DPNID W +EKFDP WN GM E S+FSTLFPQYREKYLQE WP V+ ALKEYGV+
Sbjct: 29 PWDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYGVA 88
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
C+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+DE+QCDIIKIGN
Sbjct: 89 CKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGN 148
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC 201
LVRNKERFVKRRQ LVGPNSSTLKALEILT CYILVQG+TVAAMG FKGLKQ+RRIVEDC
Sbjct: 149 LVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVEDC 208
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFP 261
+QN MHPVYHIK LM+KKELEKDPALANE+WDRFLP F+KKNVKQKK KSKEKKPYTPFP
Sbjct: 209 VQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQKKPKSKEKKPYTPFP 268
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
PP PSKID LESGEYF+S++KK KKWQEKQEKQ+EK+ ENKRKRDA+F+PPEEP
Sbjct: 269 PPQPPSKIDMQLESGEYFMSDKKKSEKKWQEKQEKQSEKSTENKRKRDASFLPPEEPMNN 328
Query: 322 NSC--EAEDKTNDVAAMAKSLKEKAKKLRKQKFA-ENINPEEYIAA 364
NS ++ED ND+ + SLK K K+L+KQK E +N EEYIA
Sbjct: 329 NSNANKSEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAG 374
>gi|21592614|gb|AAM64563.1| rev interacting protein mis3-like [Arabidopsis thaliana]
Length = 391
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 272/346 (78%), Positives = 301/346 (86%), Gaps = 3/346 (0%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD+DPNID W +EKFDP WN GM E S+FSTLFPQYREKYLQE WP V+ ALKEYGV+
Sbjct: 29 PWDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYGVA 88
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
C+LNLVEGSMTVSTTRKTRDPYIIVKARDLI+LLSRSVPAPQAIKIL+DE+QCDIIKIGN
Sbjct: 89 CKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGN 148
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC 201
LVRNKERFVKRRQ LVGPNSSTLKALEILT CYILVQG+TVAAMG FKGLKQ+RRIVEDC
Sbjct: 149 LVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVEDC 208
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFP 261
+QN MHPVYHIK LM+KKELEKDPALANE+WDRFLP F+KKNVKQKK KSKEKKPYTPFP
Sbjct: 209 VQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQKKPKSKEKKPYTPFP 268
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
PP PSKID LESGEYF+ ++KK KKWQEKQEKQ+EK+ ENKRKRDA+F+PPEEP
Sbjct: 269 PPQPPSKIDMQLESGEYFMRDKKKSEKKWQEKQEKQSEKSTENKRKRDASFLPPEEPMNN 328
Query: 322 NSC--EAEDKTNDVAAMAKSLKEKAKKLRKQKFA-ENINPEEYIAA 364
NS ++ED ND+ + SLK K K+L+KQK E +N EEYIA
Sbjct: 329 NSNANKSEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAG 374
>gi|297720351|ref|NP_001172537.1| Os01g0713700 [Oryza sativa Japonica Group]
gi|255673619|dbj|BAH91267.1| Os01g0713700 [Oryza sativa Japonica Group]
Length = 461
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/374 (68%), Positives = 303/374 (81%), Gaps = 30/374 (8%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR----------- 60
+HKGKHDKPKPWD+DPNIDHWK+E+FDP WNEGGMLEV+SFSTLFPQYR
Sbjct: 20 RHKGKHDKPKPWDDDPNIDHWKIEEFDPSWNEGGMLEVTSFSTLFPQYRGKSPHPTPPSA 79
Query: 61 -----------------EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPY 103
+KYLQEAWP+VKGALKE+GV+CELNLVEGSMTVSTTRKT+DPY
Sbjct: 80 LSWFLPRSAIDWFCLVVKKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPY 139
Query: 104 IIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSST 163
II+KA +LI+LLSRSVPAPQAIKIL+DEM C IIKIG+++RNKERFVKRR L+GPN ST
Sbjct: 140 IIIKANELIKLLSRSVPAPQAIKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGPNLST 199
Query: 164 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEK 223
LKA+EILTGCYILVQGNT AAMG +KGLKQV R+VEDC++N HPVYHIK L++K+EL K
Sbjct: 200 LKAIEILTGCYILVQGNTAAAMGYWKGLKQVVRVVEDCIKNVKHPVYHIKELLIKRELVK 259
Query: 224 DPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSER 283
+PALA+E+WD+FLPKFKKKNVKQKK +KEKK YTPFPPP QPSKID LESGE F+S++
Sbjct: 260 NPALAHESWDKFLPKFKKKNVKQKKPLTKEKKQYTPFPPPQQPSKIDLELESGECFMSDK 319
Query: 284 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PSRQNSCEAEDKTNDVAAMAKSLK 341
KK +K+WQEK EKQ++K ENKRKR+AAF+ P E + S ++ ++A MAKSLK
Sbjct: 320 KKSAKEWQEKLEKQSQKAEENKRKREAAFVHPNEDIATPYESAKSIINNGEIADMAKSLK 379
Query: 342 EKAKKLRKQKFAEN 355
+KAK+LRK + EN
Sbjct: 380 KKAKELRKNEEQEN 393
>gi|302795356|ref|XP_002979441.1| hypothetical protein SELMODRAFT_268270 [Selaginella moellendorffii]
gi|300152689|gb|EFJ19330.1| hypothetical protein SELMODRAFT_268270 [Selaginella moellendorffii]
Length = 373
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/353 (67%), Positives = 290/353 (82%), Gaps = 9/353 (2%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
KGKHDKPKPWD P++DHWK+ W+ G++E SSFSTLFPQYREKYLQ+ W V
Sbjct: 27 KGKHDKPKPWDT-PDVDHWKIVPKPEQWS--GLVEQSSFSTLFPQYREKYLQDVWHSVAR 83
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
ALKE+G+ ELNLVEGSMTV+TTRK +DPYII+KARDLI+LL+RSVPAPQA+KIL+D MQ
Sbjct: 84 ALKEHGIKGELNLVEGSMTVTTTRKVQDPYIIIKARDLIKLLARSVPAPQALKILEDYMQ 143
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKIGNL+RNK+RFVKRRQ L+GPN +TLKALE+LTGCYILVQGNTVAAMG F+GLK
Sbjct: 144 CDIIKIGNLIRNKDRFVKRRQRLLGPNGATLKALELLTGCYILVQGNTVAAMGPFQGLKT 203
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 253
+RR+VEDC+ N +HP+YHIK LM+K+EL KDPALANENW+RFLPKFKKKNV Q+K KE
Sbjct: 204 LRRVVEDCIHN-IHPIYHIKALMIKRELAKDPALANENWERFLPKFKKKNV-QRKKSKKE 261
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KKPYTPFPPP QPSKID LESGEYFLS K +KK++EK+++Q EK AENKRKRD++F+
Sbjct: 262 KKPYTPFPPPQQPSKIDLQLESGEYFLSAETKAAKKFEEKKQQQLEKAAENKRKRDSSFV 321
Query: 314 PPEEPSRQNSCEAEDKTN--DVAAMAKSLKEKAKK-LRKQKFAENINPEEYIA 363
PP+E + + DV AMA++LKEK++K L KQK ++ + + Y+A
Sbjct: 322 PPKETKKSERAGTSSGVSKADVTAMAQNLKEKSEKVLPKQKRIDD-SVQNYLA 373
>gi|302792240|ref|XP_002977886.1| hypothetical protein SELMODRAFT_107582 [Selaginella moellendorffii]
gi|300154589|gb|EFJ21224.1| hypothetical protein SELMODRAFT_107582 [Selaginella moellendorffii]
Length = 347
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/302 (73%), Positives = 261/302 (86%), Gaps = 5/302 (1%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
KGKHDKPKPWD P++DHWK+ W+ G++E SSFSTLFPQYREKYLQ+ W V
Sbjct: 27 KGKHDKPKPWD-TPDVDHWKIVPKPEQWS--GLVEQSSFSTLFPQYREKYLQDVWHSVAR 83
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
ALKE+G+ ELNLVEGSMTVSTTRK +DPYII+KARDLI+LL+RSVPAPQA+KIL+D MQ
Sbjct: 84 ALKEHGIKGELNLVEGSMTVSTTRKVQDPYIIIKARDLIKLLARSVPAPQALKILEDYMQ 143
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKIGNL+RNK+RFVKRRQ L+GPN +TLKALE+LTGCYILVQGNTVAAMG F+GLK
Sbjct: 144 CDIIKIGNLIRNKDRFVKRRQRLLGPNGATLKALELLTGCYILVQGNTVAAMGPFQGLKT 203
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 253
+RR+VEDC+ N +HP+YHIK LM+K+EL KDPALANENW+RFLPKFKKKNV Q+K KE
Sbjct: 204 LRRVVEDCIHN-IHPIYHIKALMIKRELAKDPALANENWERFLPKFKKKNV-QRKKSKKE 261
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KKPYTPFPPP QPSKID LESGEYFLS K +KK++EK+++Q EK AENKRKRD++F+
Sbjct: 262 KKPYTPFPPPQQPSKIDLQLESGEYFLSAETKAAKKFEEKKQQQLEKAAENKRKRDSSFV 321
Query: 314 PP 315
PP
Sbjct: 322 PP 323
>gi|255080030|ref|XP_002503595.1| predicted protein [Micromonas sp. RCC299]
gi|226518862|gb|ACO64853.1| predicted protein [Micromonas sp. RCC299]
Length = 398
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/349 (61%), Positives = 266/349 (76%), Gaps = 9/349 (2%)
Query: 2 GENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYRE 61
G+ E + K KG++ + KPWD D IDHWKV+ F N G+LE SSF+TLFP+YRE
Sbjct: 15 GDGEEASAGGK-KGRYRRDKPWDHD-GIDHWKVDPFTKDDNPDGLLEESSFATLFPKYRE 72
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
KYL+E WP V ALKE G++CELNLVEGSMTV TTRKT DPYII+K+RDLI+LLSRSVPA
Sbjct: 73 KYLREVWPSVTRALKECGIACELNLVEGSMTVRTTRKTFDPYIIIKSRDLIKLLSRSVPA 132
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNT 181
PQA+KIL D++QCD+IKIG +VRNKER+VKRRQ L+GPN STLKA+E+LT CY+LVQGNT
Sbjct: 133 PQALKILQDDVQCDVIKIGGMVRNKERYVKRRQRLIGPNGSTLKAIEMLTNCYVLVQGNT 192
Query: 182 VAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK 241
V+ MG +KGLK VR+I+EDCM+N MHP+YHIK LM+K+EL KDPALA+++WDRFLPKFKK
Sbjct: 193 VSCMGGWKGLKMVRKIIEDCMRN-MHPIYHIKELMIKRELAKDPALADQSWDRFLPKFKK 251
Query: 242 KNVKQKK-VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 300
KNV++KK K + K FPP PQPSKID +ESGEYFLS+ K + QEK +KQ E
Sbjct: 252 KNVQRKKPAKIGKGKKDQVFPPAPQPSKIDMQIESGEYFLSQEAKRRRAAQEKLDKQKEA 311
Query: 301 TAENKRKRDAAFIPPEEPSRQNSCEAEDK-----TNDVAAMAKSLKEKA 344
+ ++++R AFI P+E ++ A K +DV A LKEK+
Sbjct: 312 LSASQKRRRDAFIAPKEDGPEDGDAARKKKREVSADDVKASVAKLKEKS 360
>gi|308806503|ref|XP_003080563.1| rRNA processing protein (ISS) [Ostreococcus tauri]
gi|116059023|emb|CAL54730.1| rRNA processing protein (ISS) [Ostreococcus tauri]
Length = 419
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/365 (61%), Positives = 271/365 (74%), Gaps = 10/365 (2%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
KG++ + KPWD D IDHW+V+ F N G+LE SSF+ LFP+YREKYL+E WP V
Sbjct: 42 KGRYRRDKPWDHD-GIDHWRVDPFTAEDNPHGVLEESSFAVLFPKYREKYLREVWPSVTR 100
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
ALKE GVSCELNLVEGSMTV TTRKT DPYIIVKARDLI+LLSRSVPAPQA+K+LDD+
Sbjct: 101 ALKEQGVSCELNLVEGSMTVRTTRKTFDPYIIVKARDLIKLLSRSVPAPQALKVLDDDTN 160
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CD+IKIG +VRNKERFVKRRQ L+GPN STLKA+E+LTGCY+LVQGNTV+ MG +KGLK
Sbjct: 161 CDVIKIGGMVRNKERFVKRRQRLIGPNGSTLKAIEMLTGCYVLVQGNTVSVMGGWKGLKT 220
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 253
VR+IVED M+N HP+YHIK LM+K+ELEKDP LA ++WDRFLPKFKKKNV++KK +
Sbjct: 221 VRKIVEDAMKN-THPIYHIKELMIKRELEKDPELATQSWDRFLPKFKKKNVQRKKPQKVG 279
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KK FPP SK+D +ESGEYFLS+ KE K +K +KQ + EN++KR AF+
Sbjct: 280 KKERAVFPPAQPMSKVDMQIESGEYFLSKEAKERKAAYDKLQKQKNVSTENQKKRLEAFV 339
Query: 314 PPEE---PSRQNSCEA-EDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKP 369
P+E P R + EA E+ NDVAA SLK K+ K RK++ + + G K
Sbjct: 340 APKEEDKPVRTSKSEAKEEDVNDVAA---SLKAKS-KTRKEEEKRSKSSASAFVMGGVKE 395
Query: 370 SKKKK 374
SK KK
Sbjct: 396 SKSKK 400
>gi|145348735|ref|XP_001418799.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579029|gb|ABO97092.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/336 (63%), Positives = 255/336 (75%), Gaps = 7/336 (2%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEA 67
T + KG++ + KPWD D IDHW V F N G+LE SSF+ LFP+YREKYL+E
Sbjct: 35 TSSGAKKGRYRRDKPWDHD-GIDHWSVTPFTAEDNPNGVLEESSFAVLFPKYREKYLRET 93
Query: 68 WPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKI 127
WP V ALKE GVSCELNLVEGSMTV TTRKT DPYII+KARDLI+LLSRSVPAPQA+K+
Sbjct: 94 WPSVTKALKEQGVSCELNLVEGSMTVRTTRKTFDPYIIMKARDLIKLLSRSVPAPQALKV 153
Query: 128 LDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGS 187
L+DE CD+IKIG +VRNKERFVKRRQ L+GPN STLKA+E+LTGCY+LVQGNTV+ MG
Sbjct: 154 LEDETNCDVIKIGGMVRNKERFVKRRQRLIGPNGSTLKAIEMLTGCYVLVQGNTVSVMGG 213
Query: 188 FKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 247
+KGLK VR+IVED M+N HP+YHIK LM+K+ELEKDP LA ++WDRFLPKFKKKNV++K
Sbjct: 214 WKGLKMVRKIVEDAMKN-THPIYHIKELMIKRELEKDPELATQSWDRFLPKFKKKNVQRK 272
Query: 248 KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 307
K KK FPP SKIDK +ESGEYFLS+ KE K +K +KQ + + +N +K
Sbjct: 273 KPAKIGKKERAVFPPTQPMSKIDKQIESGEYFLSKEAKERKAAYDKLQKQKDTSTDNHKK 332
Query: 308 RDAAFIPPEE---PSRQNSCEAEDKTNDVAAMAKSL 340
R AAF+ P+E P+R S +A K DV A+ SL
Sbjct: 333 RQAAFVAPKEDDKPARSKSSKA--KEEDVDAITASL 366
>gi|384253358|gb|EIE26833.1| hypothetical protein COCSUDRAFT_21918 [Coccomyxa subellipsoidea
C-169]
Length = 392
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/356 (62%), Positives = 278/356 (78%), Gaps = 3/356 (0%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
KGKHDKPKPWD D I+HW+V KF N G+LE SSF+ LFP+YRE+YL+E WP
Sbjct: 23 KGKHDKPKPWDHD-GINHWEVSKFSKEDNPYGLLEESSFAILFPKYRERYLREIWPAATK 81
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
ALKE G+ CELNLVEGSMTV TTRKT DPYII+KARDL++LL+RSVP PQA+K+L+D+MQ
Sbjct: 82 ALKEVGIGCELNLVEGSMTVRTTRKTWDPYIIMKARDLLKLLARSVPYPQAVKVLNDDMQ 141
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKIG LVRNKE+FVKRRQ L+GPN +TLKALE+LT CYILVQGNTV+AMG F+GLKQ
Sbjct: 142 CDIIKIGGLVRNKEKFVKRRQRLLGPNGATLKALELLTNCYILVQGNTVSAMGPFQGLKQ 201
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 253
VRR+VEDC++N +HP+YHIK LM+K+EL KDPAL ENW+RFLPKFKKKNVK+KK +
Sbjct: 202 VRRVVEDCIKN-VHPIYHIKTLMIKRELAKDPALKEENWERFLPKFKKKNVKRKKPVVTK 260
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KK YTPFPPP QP K D LESGEYFL++++K +K +Q +QAE+ AE KR+R AF+
Sbjct: 261 KKDYTPFPPPQQPRKEDLELESGEYFLAQQEKAKRKKAVEQAQQAERVAEKKRRRQDAFV 320
Query: 314 PPE-EPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEK 368
PP+ P++ E D+A M +SLK+KAKK K+ + ++++A E+
Sbjct: 321 PPQASPAQPVVQEVRSANADLAEMTQSLKKKAKKSLKRDHGDEGGLDQFLAVPSEQ 376
>gi|168031539|ref|XP_001768278.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680456|gb|EDQ66892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 345
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/297 (73%), Positives = 260/297 (87%), Gaps = 3/297 (1%)
Query: 20 PKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYG 79
PKPWD D +I+HWK+EKFDP +NEGGMLE SSF+TLFP YREKYL+E WP++ ALKE+G
Sbjct: 35 PKPWDTD-DIEHWKLEKFDPSFNEGGMLEESSFATLFPAYREKYLRETWPVITQALKEHG 93
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 139
+ L+LV+GSMTVSTTRKTRDPYII+KARDL++LLSRSVPAPQA+KIL+D+MQCDIIKI
Sbjct: 94 IKAVLDLVKGSMTVSTTRKTRDPYIIMKARDLMKLLSRSVPAPQALKILEDDMQCDIIKI 153
Query: 140 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
GNL+RNKERFVKRRQ L+GPN +TLKALE+LTGCY+LVQG+TV+AMG +KGLK VRR+VE
Sbjct: 154 GNLIRNKERFVKRRQRLLGPNGATLKALELLTGCYVLVQGSTVSAMGPWKGLKAVRRVVE 213
Query: 200 DCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP-YT 258
DC++N +HP+YHIK LM+K+EL KDP L ++NWDRFLPKFKKKNVK KKV ++K YT
Sbjct: 214 DCIKN-VHPIYHIKALMIKRELAKDPELKDQNWDRFLPKFKKKNVKAKKVSKDKEKKDYT 272
Query: 259 PFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP 315
PFPPP QPSK+D LESGEYFLS K +KKW+ K+EKQ+EK ENKRKR+AAFI P
Sbjct: 273 PFPPPQQPSKVDLQLESGEYFLSAEMKAAKKWEAKKEKQSEKAVENKRKREAAFIAP 329
>gi|443897833|dbj|GAC75172.1| rRNA processing protein [Pseudozyma antarctica T-34]
Length = 461
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/311 (63%), Positives = 245/311 (78%), Gaps = 9/311 (2%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+H K KPWD+D I+HW+V KF P +G LE SSF+TLFP+YRE+YL+E W V AL
Sbjct: 104 RHRKDKPWDDD-TINHWEVPKFTPDEIKGPFLEESSFATLFPKYRERYLKEVWGHVTSAL 162
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++G++C L+LVEGSMTV TTRK DPYII+KARD+IRLLSRSVP PQA+KIL+D ++CD
Sbjct: 163 DKHGIACTLDLVEGSMTVKTTRKAYDPYIILKARDMIRLLSRSVPFPQAVKILEDGIECD 222
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKIGNL+RNKERFVKRRQ ++GPN STLKA+E+LTGCY+LVQGNTV+AMG FK LK+VR
Sbjct: 223 VIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTGCYVLVQGNTVSAMGPFKSLKEVR 282
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK- 254
RIV DC++N +HP+YHIK LM+K+EL KDP LA ENW+RFLPKFKK+NVK KK E+
Sbjct: 283 RIVIDCLKN-VHPIYHIKELMIKRELAKDPKLAEENWERFLPKFKKRNVKPKKSAEGEQK 341
Query: 255 ------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 308
K YTPFPPP QPSKID LESGEYFL R+K+ + Q+K Q E+ + + +R
Sbjct: 342 KEKIKPKTYTPFPPPQQPSKIDLQLESGEYFLKPRQKKHAEEQKKIAHQQEQKEKREAER 401
Query: 309 DAAFIPPEEPS 319
AF+PP EP+
Sbjct: 402 QKAFVPPTEPA 412
>gi|223998947|ref|XP_002289146.1| hypothetical protein THAPSDRAFT_268598 [Thalassiosira pseudonana
CCMP1335]
gi|220974354|gb|EED92683.1| hypothetical protein THAPSDRAFT_268598 [Thalassiosira pseudonana
CCMP1335]
Length = 412
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/362 (56%), Positives = 265/362 (73%), Gaps = 25/362 (6%)
Query: 7 KTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNE-----GGMLEVSSFSTLFPQYRE 61
K+ +KK+ K+ + KPWD +P+IDHW + +D N G +LE SSF+TLFP+YRE
Sbjct: 17 KSSSKKNHNKYRRDKPWD-NPSIDHWAITPWDEETNNDSLPGGRLLEESSFATLFPKYRE 75
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
KYL+E WP+V +L +Y V+CELNLVEGSMTV TT+KT DPYII+KARDLI+LL+RS+PA
Sbjct: 76 KYLREVWPLVTKSLDKYKVACELNLVEGSMTVRTTKKTSDPYIILKARDLIKLLARSIPA 135
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNT 181
PQA+KIL+D+ C+IIKIG LVRNKERFVKRRQ L+GP+ +TLKALE+LT CYILVQGNT
Sbjct: 136 PQALKILNDDHHCEIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTQCYILVQGNT 195
Query: 182 VAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK 241
V+ MG++KG+KQ R ++ DCM N +HPVY+IK LM+ +ELE+DP L E+W+RFLP FKK
Sbjct: 196 VSVMGTYKGIKQTRNVILDCMNN-IHPVYNIKRLMIMRELERDPKLKEESWERFLPTFKK 254
Query: 242 KNVKQKK-VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 300
KNVK++K + K+KK YTPFPP QPSKID LESGEYFLSER++++KK EK+ EK
Sbjct: 255 KNVKRRKPHQLKKKKSYTPFPPAQQPSKIDLQLESGEYFLSERERKAKKLGEKKIASMEK 314
Query: 301 TAENKRKRDAAFIPPE-----------------EPSRQNSCEAEDKTNDVAAMAKSLKEK 343
T E +R R+ F+ P E +R+ S D +DV +AK +K
Sbjct: 315 TEEKRRARELEFVHPSKFEEASVGGGTAAGAVVEANRKGSESGVDAKDDVDRLAKKFAKK 374
Query: 344 AK 345
K
Sbjct: 375 RK 376
>gi|237832063|ref|XP_002365329.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii ME49]
gi|211962993|gb|EEA98188.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii ME49]
gi|221486813|gb|EEE25059.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii GT1]
gi|221506516|gb|EEE32133.1| ribosomal RNA assembly protein, putative [Toxoplasma gondii VEG]
Length = 394
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/343 (59%), Positives = 262/343 (76%), Gaps = 12/343 (3%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+GK+ + KPWD D ++DHWK+E+F P N GGMLE SSF+ LFPQYREKYL+E WP VK
Sbjct: 41 RGKYRRDKPWDTD-DVDHWKIEEFKPEHNPGGMLEESSFACLFPQYREKYLKEVWPEVKR 99
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL ++ V EL+L+EGSMTV TT+KT DPYII+KARD+I+LL+RSVP QA KILDD M
Sbjct: 100 ALGQHFVKAELDLIEGSMTVRTTKKTFDPYIIIKARDMIKLLARSVPIAQARKILDDGMF 159
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKIG +VRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQG TV+ MG+ KG+K
Sbjct: 160 CDIIKIGGMVRNKEKFVKRRQRLVGPNGSTLKAIELLTKCYVLVQGQTVSVMGTHKGIKV 219
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK- 252
V+R+VEDCM+N +HPVYHIK LM+K+ELEKDPAL ENW+RFLP+FKK+NV++K ++
Sbjct: 220 VQRLVEDCMKN-IHPVYHIKELMIKRELEKDPALVEENWERFLPQFKKRNVQRKARRAAI 278
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+KK + FPP P K D LLESGEYF++E +K+ KK +E EK+ +TAE KR+R AF
Sbjct: 279 KKKSKSLFPPEQTPRKEDLLLESGEYFVTEEQKQMKKAKEVLEKREMRTAERKRERQQAF 338
Query: 313 IPPEEPS--------RQNSCEAEDKTND-VAAMAKSLKEKAKK 346
P E S +++ AE + D ++A+A+ L+ + KK
Sbjct: 339 EPSAENSAKKRHAGTAESAGSAESASRDSISAIAERLQVRTKK 381
>gi|412992272|emb|CCO19985.1| ribosomal RNA assembly protein mis3 [Bathycoccus prasinos]
Length = 390
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/313 (66%), Positives = 251/313 (80%), Gaps = 3/313 (0%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
E+ N+ KG++ + KPWD IDHW V KF N G+L+ SSF+TLFP+YREKYL+
Sbjct: 15 EQEQNQGKKGRYRREKPWDH-AGIDHWDVPKFTKEDNPHGLLDESSFATLFPKYREKYLR 73
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
+ WP + ALK+ GV CELNLVEGSMTV TTRKT DPYII+KARDLI+LLSRSVPAPQA+
Sbjct: 74 DVWPSITKALKDVGVGCELNLVEGSMTVRTTRKTWDPYIIIKARDLIKLLSRSVPAPQAL 133
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 185
K+L D+ QCD+IKIG LVRNKERFVKRRQ LVGPN STLKA+E+LT CY+L+QGNTV+AM
Sbjct: 134 KVLSDDTQCDVIKIGGLVRNKERFVKRRQRLVGPNGSTLKAIEMLTDCYVLIQGNTVSAM 193
Query: 186 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 245
GSFKGLK R+IVED M+N +HP+YHIK LM+K+ELEKDP L N++WDRFLPKFKKKNVK
Sbjct: 194 GSFKGLKTCRKIVEDAMKN-VHPIYHIKELMIKRELEKDPELKNQSWDRFLPKFKKKNVK 252
Query: 246 QKKVK-SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+KK + KEKK + FPP PSKID +ESGEYFLS+ K+ KK QEK EKQ E +N
Sbjct: 253 RKKPEYVKEKKARSVFPPAQMPSKIDLQIESGEYFLSQEAKQMKKAQEKLEKQKEGIEKN 312
Query: 305 KRKRDAAFIPPEE 317
KR+R+ AFI P+E
Sbjct: 313 KRRREEAFIAPKE 325
>gi|302895245|ref|XP_003046503.1| 90S preribosome/SSU processome component KRR1 [Nectria haematococca
mpVI 77-13-4]
gi|256727430|gb|EEU40790.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 321
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/309 (63%), Positives = 242/309 (78%), Gaps = 7/309 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WKV+ F P N GG E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 HKKEKPWDTD-DIDKWKVDVFTPKDNAGGTFAEESSFATLFPKYREVYLKEAWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKILDD + CD
Sbjct: 64 EKTGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILDDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI +LVRNKERFVKRRQ ++GPN STLKALE+LT YILV GNTV+AMG +KGLK++R
Sbjct: 124 IIKIRSLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKEMR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + ++ KV
Sbjct: 184 RVVEDCMAN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSRRRVPLKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFL ++ KE +E++EKQ ++ + ++R+A
Sbjct: 243 KTKKTYTPFPPAPEKSKVDMQIESGEYFLGKQGKERAAQEERKEKQKQRKEDKAKEREAE 302
Query: 312 FIPPEEPSR 320
F+PPEE R
Sbjct: 303 FVPPEEGGR 311
>gi|388854361|emb|CCF51945.1| probable KRR1-required for 40S ribosome biogenesis [Ustilago
hordei]
Length = 377
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/326 (60%), Positives = 245/326 (75%), Gaps = 26/326 (7%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KH K KPWD D +I+HW+V +F P +G LE SSF+TLFP+YRE+YL+E W V AL
Sbjct: 19 KHRKDKPWDSD-SINHWEVPQFLPNEIKGTFLEESSFATLFPKYRERYLKEVWGHVTSAL 77
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DPYII+KARD+IRLLSRSVP PQA+KIL+D ++CD
Sbjct: 78 EKHGIACTLDLVEGSMTVKTTRKTYDPYIILKARDMIRLLSRSVPFPQAVKILEDGVECD 137
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKIG+L+RNKERFVKRRQ ++GPN STLKA+E+LTGCY+LVQGNTV+AMG FK LK+VR
Sbjct: 138 VIKIGHLLRNKERFVKRRQRIIGPNGSTLKAIELLTGCYVLVQGNTVSAMGHFKALKEVR 197
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS---- 251
RIV DC++N +HP+YHIK LM+K+EL KDP LA ENWDRFLPKFKK+NVK K +
Sbjct: 198 RIVIDCLKN-IHPIYHIKELMIKRELAKDPKLAEENWDRFLPKFKKRNVKSKPASTTTDS 256
Query: 252 --------------------KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQ 291
+KK YTPFPPP QPSKID LESGEYFL R+K+ + +
Sbjct: 257 ANGVATGANAVGEGSSKKKEIKKKTYTPFPPPQQPSKIDLQLESGEYFLKPREKKRAEEE 316
Query: 292 EKQEKQAEKTAENKRKRDAAFIPPEE 317
K +KQAE + + +R F+PP E
Sbjct: 317 RKLKKQAEHKEKREAERQKMFVPPTE 342
>gi|378727857|gb|EHY54316.1| ribosomal RNA assembly protein KRR1 [Exophiala dermatitidis
NIH/UT8656]
Length = 337
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 239/306 (78%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E+F P N GG E SSF+ LFP+YRE YL++AWP+V AL
Sbjct: 5 HKKEKPWDTD-DIDKWKIEEFKPEHNVGGTFAEESSFACLFPKYRELYLKQAWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEG M V TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL D+M CD
Sbjct: 64 EKKGIACTLDLVEGRMEVRTTRKTYDPAAILDARDLIKLLARSVPAPQALKILQDDMACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI NLVRNKERFVKRRQ L+GPN STLKALE+LT YILVQGNTV+ MG +KGLK+VR
Sbjct: 124 VIKIRNLVRNKERFVKRRQRLLGPNGSTLKALELLTNTYILVQGNTVSTMGGYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YH+K LM+K+EL KDPAL NE+WDRFLP FKKK + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHVKELMIKRELAKDPALKNESWDRFLPHFKKKTLSKRHKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KPYTPFPPP + SKID +ESGEYFL+++ KE K QE+ E+Q K E +R+R+ A
Sbjct: 243 KSSKPYTPFPPPREKSKIDLQIESGEYFLAKQAKERAKEQERLERQKAKKEEKQREREQA 302
Query: 312 FIPPEE 317
F+ P+E
Sbjct: 303 FVAPKE 308
>gi|358393418|gb|EHK42819.1| hypothetical protein TRIATDRAFT_300850 [Trichoderma atroviride IMI
206040]
Length = 320
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 238/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WKVE F N GG E SSF TLFP+YRE YL+EAWP++ AL
Sbjct: 5 HKKEKPWDTD-DIDKWKVEAFTAKDNAGGTFTEESSFVTLFPKYREVYLKEAWPLITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KILDD + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILDDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT YILV GNTV+AMG +KGLK++R
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTETYILVHGNTVSAMGPYKGLKELR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRVPLKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +ESGEYFLS+ K+ E++EKQ E + ++R A
Sbjct: 243 KAKKVYTPFPPAPEKSKVDKQIESGEYFLSKEAKDRAVLTERREKQQEAKEQRAKQRAAE 302
Query: 312 FIPPEE 317
++PPEE
Sbjct: 303 YVPPEE 308
>gi|401406702|ref|XP_003882800.1| putative ribosomal RNA assembly protein [Neospora caninum
Liverpool]
gi|325117216|emb|CBZ52768.1| putative ribosomal RNA assembly protein [Neospora caninum
Liverpool]
Length = 394
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/334 (61%), Positives = 256/334 (76%), Gaps = 12/334 (3%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
+ + KPWD D ++DHWK+E+F P N GGMLE SSF+ LFPQYREKYL+E WP VK AL
Sbjct: 44 YRRDKPWDTD-DVDHWKIEEFKPEHNPGGMLEESSFACLFPQYREKYLKEVWPEVKRALG 102
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++ V EL+LVEGSMTV TT+KT DPYII+KARD+I+LL+RSVP QA KILDD M CDI
Sbjct: 103 QHFVKAELDLVEGSMTVRTTKKTYDPYIIIKARDMIKLLARSVPIAQARKILDDGMFCDI 162
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
IKIG +VRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQG TV+ MG+ KG+K V+R
Sbjct: 163 IKIGGMVRNKEKFVKRRQRLVGPNGSTLKAIELLTKCYVLVQGQTVSVMGTHKGIKVVQR 222
Query: 197 IVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-EKK 255
+VEDCM+N +HPVYHIK LM+K+ELEKDPAL ENW+RFLP+FKK+NV++K +++ +KK
Sbjct: 223 LVEDCMKN-IHPVYHIKELMIKRELEKDPALVAENWERFLPQFKKRNVQRKARRAEVKKK 281
Query: 256 PYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP 315
+ FPP P K D LLESGEYF++E +K+ KK +E EK+ +TAE KR+R AF P
Sbjct: 282 NKSLFPPEQTPRKEDLLLESGEYFVTEEQKQMKKAKEVLEKRELRTAERKRERQRAFEPS 341
Query: 316 EEPS----RQNSCEA---EDKTN--DVAAMAKSL 340
E S R N +A D T+ VAA+A+ L
Sbjct: 342 AENSAKKRRANFSDAAGDNDSTDSASVAAIAERL 375
>gi|358385056|gb|EHK22653.1| hypothetical protein TRIVIDRAFT_179973 [Trichoderma virens Gv29-8]
Length = 320
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/306 (62%), Positives = 238/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WKVE F N GG E SSF TLFP+YRE YL+EAWP++ AL
Sbjct: 5 HKKDKPWDTD-DIDKWKVETFTAKDNAGGTFTEESSFVTLFPKYREVYLKEAWPLITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GPN STLKALE+LT YILV GNTV+AMG +KGLK++R
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKELR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRVPLKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +ESGEYFLS+ K+ +++EKQ + + ++R A
Sbjct: 243 KAKKVYTPFPPAPEKSKVDKQIESGEYFLSKEAKDRAALSDRKEKQKQAKDDRAKERAAE 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|340519761|gb|EGR49999.1| hypothetical protein TRIREDRAFT_76833 [Trichoderma reesei QM6a]
Length = 320
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/306 (62%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E F N GG E SSF TLFP+YRE YL+E WP++ AL
Sbjct: 5 HKKDKPWDTD-DIDKWKIETFTAKDNAGGTFAEESSFVTLFPKYREVYLKEVWPLITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KILDD + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILDDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GPN STLKALE+LT YILV GNTV+AMG +KGLK++R
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKELR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSKRRVPLKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +ESGEYFLS+ K+ +++EKQ + + ++R A
Sbjct: 243 KTKKVYTPFPPAPEKSKVDKQIESGEYFLSKEAKDRAALSDRKEKQKQAKDDRAKERAAQ 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|303271267|ref|XP_003054995.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462969|gb|EEH60247.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 306
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/305 (65%), Positives = 248/305 (81%), Gaps = 3/305 (0%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
KG++ + KPWD IDHWKV+ F N G+L+ SSF+TLFP+YREKYL+E WP V
Sbjct: 2 KGRYRRDKPWDH-AGIDHWKVDPFTKEDNPDGLLDESSFATLFPKYREKYLREVWPSVTR 60
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
ALKE G++CELNLVEGSMTV TTRKT DPYII+K+RDLI+LLSRSVPAPQA+KIL D++Q
Sbjct: 61 ALKECGIACELNLVEGSMTVRTTRKTFDPYIIIKSRDLIKLLSRSVPAPQALKILSDDVQ 120
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CD+IKIG +VRNKER+VKRRQ L+GPN STLKA+E+LTGCY+LVQGNTV+ MG +KGLK
Sbjct: 121 CDVIKIGGMVRNKERYVKRRQRLIGPNGSTLKAIEMLTGCYVLVQGNTVSCMGGWKGLKT 180
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-VKSK 252
VR+I+EDCM+N MHP+YHIK LM+K+EL KDPALA+++WDRFLPKFKKKNVK+KK K
Sbjct: 181 VRKIIEDCMKN-MHPIYHIKELMIKRELAKDPALASQSWDRFLPKFKKKNVKRKKPSKIG 239
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+ K FPP P PSK+D+ +ESGEYFLS+ K + EK EKQ E + +++KR+ AF
Sbjct: 240 KGKKDQVFPPAPVPSKLDQQIESGEYFLSQEAKRRRAAAEKLEKQKEAVSASQKKRNEAF 299
Query: 313 IPPEE 317
I P+E
Sbjct: 300 IAPKE 304
>gi|110289174|gb|ABG66110.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza
sativa Japonica Group]
Length = 292
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/282 (71%), Positives = 245/282 (86%), Gaps = 3/282 (1%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTVSTTRKTRDPYIIVKA++LI+LLSRSVPAPQAIKIL+DEM CDIIKIG+++RNKERFV
Sbjct: 1 MTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAIKILNDEMSCDIIKIGSIIRNKERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 210
KRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMGS+KGLKQVRR+VEDC++N HPVY
Sbjct: 61 KRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKGLKQVRRVVEDCIKNIKHPVY 120
Query: 211 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKID 270
HIK L++K+EL K+PALANE+WDRFLPKFKKKNVKQKK +KEKKPYTPFPPP QPSKID
Sbjct: 121 HIKELLIKRELAKNPALANESWDRFLPKFKKKNVKQKKPITKEKKPYTPFPPPQQPSKID 180
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ--NSCEAED 328
LESGEYF+S++KK +KKWQEK EKQ+EK ENKRKR+AAF+PP+E + S ++
Sbjct: 181 LELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENKRKREAAFVPPKEDTATPYESAKSTS 240
Query: 329 KTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS-GEKP 369
+++A MAKSLK+KAK+ RK + EN+ E Y+A++ G +P
Sbjct: 241 NNDEIADMAKSLKKKAKEFRKSEAQENVRLESYVASNEGSRP 282
>gi|303310074|ref|XP_003065050.1| 90S preribosome/SSU processome component KRR1 [Coccidioides
posadasii C735 delta SOWgp]
gi|240104709|gb|EER22905.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320033237|gb|EFW15186.1| ribosomal RNA assembly protein mis3 [Coccidioides posadasii str.
Silveira]
Length = 349
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 240/306 (78%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP++ AL
Sbjct: 5 HKKDKPWDTD-DIDKWKIEEFKPEDNAGGTFAEESSFVSLFPKYREVYLKETWPIITRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPAPQALKILEDGTACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQGNTVAAMG +KGLK+VR
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQGNTVAAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKELMIKRELAKDPKLANESWDRFLPHFKKRTLSKRKKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP + SK+D +ESGEYFLS+ KE + +E E+Q EK AE ++ +
Sbjct: 243 KSKKVYTPFPPPQEKSKVDLQIESGEYFLSKDAKERARKEEIMERQREKRAEKMKEIEKD 302
Query: 312 FIPPEE 317
FIPP+E
Sbjct: 303 FIPPKE 308
>gi|164660108|ref|XP_001731177.1| hypothetical protein MGL_1360 [Malassezia globosa CBS 7966]
gi|159105077|gb|EDP43963.1| hypothetical protein MGL_1360 [Malassezia globosa CBS 7966]
Length = 363
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 244/306 (79%), Gaps = 5/306 (1%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAW 68
VNK + + DKP WD D +IDHWK+E+F N LE SSF+TLFP+YREKYL+E W
Sbjct: 11 VNKNKRFRKDKP--WDSD-DIDHWKIERFTQEDNPHHFLEESSFATLFPKYREKYLREVW 67
Query: 69 PMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL 128
V AL+++GV+C L+LVEGSM+V TTRKT DPYII++ARDLI+LLSRSVP QA+KIL
Sbjct: 68 GHVTTALEKHGVACTLDLVEGSMSVRTTRKTFDPYIILRARDLIKLLSRSVPFTQAVKIL 127
Query: 129 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF 188
D+M CD+IKIGN+VRNKERFVKRRQ ++GPN +TLKA+E+LTGCY+LVQGNTV+AMGS+
Sbjct: 128 QDDMACDVIKIGNIVRNKERFVKRRQRIIGPNGNTLKAIELLTGCYVLVQGNTVSAMGSY 187
Query: 189 KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK 248
KGLK+VRRI+ DCM+N +HP+YHIK LM+K+EL KDP LANE+WDRFLPKFKK+NVK KK
Sbjct: 188 KGLKEVRRIILDCMKN-IHPIYHIKELMIKRELAKDPKLANESWDRFLPKFKKQNVKSKK 246
Query: 249 VKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 307
KK YTPFPPP QPSK+D LESGEYFL +K+ + +K + QAE + +++
Sbjct: 247 PAEPPKKKIYTPFPPPQQPSKLDLQLESGEYFLKPHEKKKSEMDKKLQAQAEHAVKREKE 306
Query: 308 RDAAFI 313
R+ F+
Sbjct: 307 REKQFM 312
>gi|302500722|ref|XP_003012354.1| hypothetical protein ARB_01313 [Arthroderma benhamiae CBS 112371]
gi|291175912|gb|EFE31714.1| hypothetical protein ARB_01313 [Arthroderma benhamiae CBS 112371]
Length = 348
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/308 (62%), Positives = 243/308 (78%), Gaps = 7/308 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQGNTVAAMG FKGLK+VR
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RIVEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV
Sbjct: 184 RIVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE ++++
Sbjct: 243 KSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKMKEQEKD 302
Query: 312 FIPPEEPS 319
FIPP+E +
Sbjct: 303 FIPPKEDT 310
>gi|119178764|ref|XP_001241021.1| 90S preribosome/SSU processome component KRR1 [Coccidioides immitis
RS]
gi|392867014|gb|EAS29799.2| ribosomal RNA assembly protein KRR1 [Coccidioides immitis RS]
Length = 349
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 240/306 (78%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP++ AL
Sbjct: 5 HKKDKPWDTD-DIDKWKIEEFKPEDNAGGTFAEESSFVSLFPKYREVYLKETWPILTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPAPQALKILEDGTACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQGNTVAAMG +KGLK+VR
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQGNTVAAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKELMIKRELAKDPKLANESWDRFLPHFKKRTLSKRKKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP + SK+D +ESGEYFLS+ KE + +E E+Q EK AE ++ +
Sbjct: 243 KSKKVYTPFPPPQEKSKVDLQIESGEYFLSKDAKERARKEEIMERQREKRAEKMKEIEKD 302
Query: 312 FIPPEE 317
FIPP+E
Sbjct: 303 FIPPKE 308
>gi|326482313|gb|EGE06323.1| ribosomal RNA assembly protein mis3 [Trichophyton equinum CBS
127.97]
Length = 348
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/308 (62%), Positives = 242/308 (78%), Gaps = 7/308 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQGNTVAAMG FKGLK+VR
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RIVEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV
Sbjct: 184 RIVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE +++
Sbjct: 243 KSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKMKEQGKD 302
Query: 312 FIPPEEPS 319
FIPP+E +
Sbjct: 303 FIPPKEDT 310
>gi|219117602|ref|XP_002179593.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408646|gb|EEC48579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 379
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/376 (52%), Positives = 270/376 (71%), Gaps = 16/376 (4%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-------MLEVSSFSTLFPQYRE 61
KK+ K+ + KPWD D +IDHWK+ ++ ++GG +LE SSF+TLFP+YRE
Sbjct: 11 ATKKNHNKYRRDKPWDND-DIDHWKLASWNA--DDGGDTLPGGRLLEESSFATLFPKYRE 67
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
YL++ WP+V L ++GV+CELNLVEGSMTV TT++T+DPY+I+KARDL++LL+RS+P
Sbjct: 68 AYLRQIWPVVTRHLDQHGVACELNLVEGSMTVRTTKRTKDPYVILKARDLLKLLARSLPV 127
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNT 181
QA+KIL D+ QCDI+KIG LVRNKERFVKRRQ L+GP+ STLKALE+LTGCYILVQGNT
Sbjct: 128 AQAVKILQDDYQCDIVKIGGLVRNKERFVKRRQRLLGPDGSTLKALELLTGCYILVQGNT 187
Query: 182 VAAMG-SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFK 240
V+ MG S+KGLKQ RR+V DC++N +HPVYH+K LM++KEL KDPAL NE+W RFLP+F+
Sbjct: 188 VSIMGDSWKGLKQARRVVLDCLKN-IHPVYHLKRLMIQKELAKDPALQNEDWSRFLPQFQ 246
Query: 241 KKNVKQKKVK-SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAE 299
KKNV+ KK K KK YTPFPP QPSKID LESGEYF +E ++++KK +++E
Sbjct: 247 KKNVQTKKPSVRKTKKSYTPFPPAQQPSKIDLQLESGEYFATEFERKTKKVADRKEASKS 306
Query: 300 KTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPE 359
K+ ++ R+ P SR+ T + + + +K+K +K + + +P
Sbjct: 307 KSIAKRKARELEEETPVLASRKAKTTT---TKEDIPVEQRIKDKFQKAAQASQSSTSDPA 363
Query: 360 EYIAASGEKPSKKKKS 375
++I SG + KKS
Sbjct: 364 DFIQGSGSGSKRGKKS 379
>gi|115384518|ref|XP_001208806.1| 90S preribosome/SSU processome component KRR1 [Aspergillus terreus
NIH2624]
gi|114196498|gb|EAU38198.1| ribosomal RNA assembly protein mis3 [Aspergillus terreus NIH2624]
Length = 360
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/306 (62%), Positives = 239/306 (78%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD P+ID WKVE F P N G E SSF+TLFP+YRE YL+EAWP++ AL
Sbjct: 5 YKRDKPWD-TPDIDKWKVEPFKPEDNAAGSFAEESSFATLFPKYREVYLKEAWPVITRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D++ CD
Sbjct: 64 EKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI N VRNKERFVKRRQ ++GP+ STLKALE+LTG YILVQGNTVAAMG +KGLK+VR
Sbjct: 124 IIKIRNQVRNKERFVKRRQRILGPSGSTLKALELLTGTYILVQGNTVAAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+V DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVNDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E EKQ +K E ++R +
Sbjct: 243 KSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERARKEEVMEKQRQKREEKMQERAKS 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|328769725|gb|EGF79768.1| hypothetical protein BATDEDRAFT_35295 [Batrachochytrium
dendrobatidis JAM81]
Length = 369
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/320 (60%), Positives = 240/320 (75%), Gaps = 2/320 (0%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
K +H K KPWD D +IDHWKV++F P N L SSF+TLFP+YRE YL+E WPM+
Sbjct: 23 KRQHRKEKPWDTD-DIDHWKVDEFKPEHNPHPFLAESSFATLFPKYRETYLREVWPMITA 81
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
+L + G++C L+LVEGS+TV TTRKT DPYII+KARD+IRLLSRSV QA+KIL+D +
Sbjct: 82 SLDKVGLACALDLVEGSITVKTTRKTYDPYIILKARDMIRLLSRSVQFNQAVKILEDGVA 141
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKIG LVRNKERFVKRRQ L+GP STLKA+E+LT CY+LVQGNTVAAMG FKGLK
Sbjct: 142 CDIIKIGGLVRNKERFVKRRQRLLGPKGSTLKAIELLTNCYVLVQGNTVAAMGPFKGLKD 201
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 253
VRR++ DCM+N +HP+YHIK LM+K+EL KD L E+WDRFLPKFKK+NV+ K
Sbjct: 202 VRRLILDCMKN-IHPIYHIKELMIKRELAKDEKLKEESWDRFLPKFKKRNVQSSKKVKIV 260
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KK TPFPPP QP KID +ESGE+FLS+ ++++ Q+K+EKQ + + + R AFI
Sbjct: 261 KKERTPFPPPQQPRKIDLQIESGEFFLSKTERDAAARQKKKEKQDANSLKKQEARQEAFI 320
Query: 314 PPEEPSRQNSCEAEDKTNDV 333
P EP R S ++ K +
Sbjct: 321 APAEPKRTKSESSQQKPQSI 340
>gi|326476732|gb|EGE00742.1| rRNA assembly protein Mis3 [Trichophyton tonsurans CBS 112818]
Length = 348
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/308 (62%), Positives = 242/308 (78%), Gaps = 7/308 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQGNTVAAMG FKGLK+VR
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RIVEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV
Sbjct: 184 RIVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE +++
Sbjct: 243 KSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKMKEQGKD 302
Query: 312 FIPPEEPS 319
FIPP+E +
Sbjct: 303 FIPPKEDT 310
>gi|393215379|gb|EJD00870.1| ribosomal RNA assembly protein mis3 [Fomitiporia mediterranea
MF3/22]
Length = 393
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/345 (57%), Positives = 250/345 (72%), Gaps = 32/345 (9%)
Query: 2 GENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYR 60
E E V K+K +H K KPWD D +IDHWK++ F N+GG LE SSF+TLFP+YR
Sbjct: 3 SETDEAPVVNKNK-RHRKDKPWDTD-DIDHWKIDPFTNTDNKGGTFLEESSFATLFPKYR 60
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKYL+E W V AL+ +G++C L+L+ GSM V TTRKT DPYII+KARD+I+LL+R V
Sbjct: 61 EKYLREVWSAVTKALESHGIACTLDLIHGSMAVRTTRKTFDPYIILKARDMIKLLARGVA 120
Query: 121 APQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN 180
QA+KIL+D+M CDIIKIG LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQGN
Sbjct: 121 LGQAVKILNDDMACDIIKIGGLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGN 180
Query: 181 TVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFK 240
TV+AMG +K LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LANE+WDRFLPKF+
Sbjct: 181 TVSAMGPYKSLKEVRRIVLDCMRN-IHPIYRIKELMIKRELAKDPKLANESWDRFLPKFR 239
Query: 241 KKNVK--QKKVKSKE--------------------------KKPYTPFPPPPQPSKIDKL 272
K+++K +K + E KK YTPFPPP QP K+D
Sbjct: 240 KRHLKTSEKTARKNEAHRSKDEARKEAGLDVDGSTTANIPKKKVYTPFPPPQQPRKVDLQ 299
Query: 273 LESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
LESGEYFL R+KE+K+ Q+++EKQAE TAE + KR AF+ P E
Sbjct: 300 LESGEYFLKPREKEAKEAQKRKEKQAEVTAERQAKRAEAFVAPTE 344
>gi|242787818|ref|XP_002481093.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
stipitatus ATCC 10500]
gi|218721240|gb|EED20659.1| rRNA assembly protein Mis3, putative [Talaromyces stipitatus ATCC
10500]
Length = 348
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/304 (63%), Positives = 237/304 (77%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF TLFP+YRE YL+EAWPM+ L
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPEDNAGGTFAEESSFMTLFPKYREVYLKEAWPMITRTL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LLSRSVPA QAIKIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLSRSVPAQQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI +LV NKERFVKRRQ ++GP+ STLKALE+LTG YILVQGNTV+ MG FKGLK+VR
Sbjct: 124 IIKIRSLVNNKERFVKRRQRILGPSGSTLKALELLTGTYILVQGNTVSTMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R++EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVIEDCMAN-IHPIYHIKELMIKRELAKDPTLATESWDRFLPNFKKRTLSKRRVPHKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K +K YTPFPPP + SKIDK LESGEYFLS++ KE + +E QEKQ EK E ++R
Sbjct: 243 KSQKVYTPFPPPQEKSKIDKELESGEYFLSKQAKERVRKEEIQEKQREKREEKMKERQKD 302
Query: 312 FIPP 315
F+PP
Sbjct: 303 FVPP 306
>gi|213402313|ref|XP_002171929.1| 90S preribosome/SSU processome component KRR1 [Schizosaccharomyces
japonicus yFS275]
gi|211999976|gb|EEB05636.1| ribosomal RNA assembly protein mis3 [Schizosaccharomyces japonicus
yFS275]
Length = 334
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/308 (64%), Positives = 248/308 (80%), Gaps = 3/308 (0%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++ + KPWD D +IDHWK++ F + G LE SSF+TLFP+YREKYL+E WP V AL
Sbjct: 19 RYRREKPWDTD-DIDHWKIDPFTKEESSGPFLEESSFATLFPKYREKYLREVWPHVTRAL 77
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+YG++C L+LVEGSMTV TTRK DPY I+KARDLI+LL+RSVP PQAIK++ D++ CD
Sbjct: 78 DKYGIACVLDLVEGSMTVKTTRKAYDPYSILKARDLIKLLARSVPFPQAIKVMQDDVACD 137
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKIGNLVRNK+RF+KRRQ L+G N TLKALE+LT CYILVQG TVAAMG FKGLK+VR
Sbjct: 138 VIKIGNLVRNKDRFIKRRQRLIGNNGQTLKALELLTQCYILVQGTTVAAMGGFKGLKEVR 197
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-VKSKEK 254
R+V DCM N +HP+YHIK LM+K+EL KDPALA E+WDRFLP+FKK+NV ++K K +EK
Sbjct: 198 RVVIDCMNN-IHPIYHIKELMIKRELAKDPALATESWDRFLPQFKKRNVARRKPAKVREK 256
Query: 255 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 314
K YTPFPP QPSKID +ESGEYFL++ ++E KK QEK+EKQAEK E + +R+ AFIP
Sbjct: 257 KDYTPFPPAQQPSKIDLQIESGEYFLNKEERERKKRQEKKEKQAEKQKERQAEREKAFIP 316
Query: 315 PEEPSRQN 322
P E + Q
Sbjct: 317 PTESAPQT 324
>gi|212543805|ref|XP_002152057.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
marneffei ATCC 18224]
gi|210066964|gb|EEA21057.1| rRNA assembly protein Mis3, putative [Talaromyces marneffei ATCC
18224]
Length = 349
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/306 (62%), Positives = 236/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF TLFP+YRE YL+EAWP++ L
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEDNTGGTFAEESSFMTLFPKYREVYLKEAWPLITRTL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP QA+KIL+D + CD
Sbjct: 64 EKQGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+AMG FKGLK+VR
Sbjct: 124 IIKIRNLVNNKERFVKRRQRILGPNGSTLKALELLTSTYILVQGNTVSAMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R++EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVIEDCMAN-IHPIYHIKELMIKRELAKDPTLATESWDRFLPNFKKRTLSKRRVPHKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K +K YTPFPPP + SKIDK LESGEYFLS++ KE + +E QEKQ EK E ++R
Sbjct: 243 KSQKAYTPFPPPQEKSKIDKELESGEYFLSKQAKERVRKEEIQEKQREKREEKMKERQKD 302
Query: 312 FIPPEE 317
F+PP E
Sbjct: 303 FVPPTE 308
>gi|302668490|ref|XP_003025816.1| hypothetical protein TRV_00019 [Trichophyton verrucosum HKI 0517]
gi|291189945|gb|EFE45205.1| hypothetical protein TRV_00019 [Trichophyton verrucosum HKI 0517]
Length = 348
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/308 (62%), Positives = 242/308 (78%), Gaps = 7/308 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEG+MTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSGIACTLDLVEGNMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQGNTVAAMG FKGLK+VR
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RIVEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV
Sbjct: 184 RIVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK E ++++
Sbjct: 243 KSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRVEKMKEQEKD 302
Query: 312 FIPPEEPS 319
FIPP+E +
Sbjct: 303 FIPPKEDT 310
>gi|327298894|ref|XP_003234140.1| 90S preribosome/SSU processome component KRR1 [Trichophyton rubrum
CBS 118892]
gi|326463034|gb|EGD88487.1| rRNA assembly protein Mis3 [Trichophyton rubrum CBS 118892]
Length = 347
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/308 (62%), Positives = 242/308 (78%), Gaps = 7/308 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFAEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ ++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSCITCTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LTG Y+LVQGNTVAAMG FKGLK+VR
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTGTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RIVEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV
Sbjct: 184 RIVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE ++++
Sbjct: 243 KSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKMKEQEKD 302
Query: 312 FIPPEEPS 319
FIPP+E +
Sbjct: 303 FIPPKEDT 310
>gi|358365716|dbj|GAA82338.1| ribosomal RNA assembly protein mis3 [Aspergillus kawachii IFO 4308]
Length = 368
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/306 (62%), Positives = 238/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WKVE F P N G E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKVEPFQPDDNVAGSFAEESSFATLFPKYREVYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D++ CD
Sbjct: 64 EKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI N VRNKERFVKRRQ ++GP STLKALE+LT YILVQGNTVAAMG +KGLK+VR
Sbjct: 124 IIKIRNQVRNKERFVKRRQRILGPGGSTLKALELLTSTYILVQGNTVAAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI+ DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RIINDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ K+ ++ +E E+Q K E ++R+ A
Sbjct: 243 KTKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRQQKEEVMERQRLKREEKMKEREKA 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|225679901|gb|EEH18185.1| ribosomal RNA assembly protein mis3 [Paracoccidioides brasiliensis
Pb03]
gi|226291669|gb|EEH47097.1| ribosomal RNA assembly protein KRR1 [Paracoccidioides brasiliensis
Pb18]
Length = 359
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/306 (62%), Positives = 238/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WPMV AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEHNAGGTFTEESSFISLFPKYREAYLKETWPMVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ +TLKALE+LT YILVQGNTV+AMG +KGLK++R
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGTTLKALELLTNTYILVQGNTVSAMGPYKGLKEIR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVEDCMAN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS++ KE K +E EKQ EK R+ +
Sbjct: 243 KSKKVYTPFPPAPEKSKVDLQIESGEYFLSKQAKERAKKEEMMEKQREKRENKARELEKD 302
Query: 312 FIPPEE 317
F PP+E
Sbjct: 303 FEPPKE 308
>gi|398397527|ref|XP_003852221.1| hypothetical protein MYCGRDRAFT_109531 [Zymoseptoria tritici
IPO323]
gi|339472102|gb|EGP87197.1| hypothetical protein MYCGRDRAFT_109531 [Zymoseptoria tritici
IPO323]
Length = 887
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/317 (59%), Positives = 235/317 (74%), Gaps = 7/317 (2%)
Query: 4 NMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREK 62
N + ++ K + K KPWD D +ID WK E F P N GG E SSFSTLFP+YRE
Sbjct: 539 NAPQEMHSKMPSTYKKDKPWDTD-DIDKWKEEAFTPEQNAGGTFSEESSFSTLFPKYREA 597
Query: 63 YLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122
YL+ +WPM+ L++YG++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAP
Sbjct: 598 YLKASWPMITRQLEKYGIACTLDLVEGSMTVKTTRKTYDPASILNARDLIKLLARSVPAP 657
Query: 123 QAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTV 182
QA+KIL+D M CD+IKI +VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV
Sbjct: 658 QAVKILEDGMACDVIKIRGMVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTV 717
Query: 183 AAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK 242
+ MG +K LK+VRR+VEDCM N +HP+YH+K LM+K+EL KDP L NENWDRFLP FKK+
Sbjct: 718 SVMGGYKSLKEVRRVVEDCMDN-IHPIYHVKELMIKRELAKDPELKNENWDRFLPHFKKR 776
Query: 243 NVKQKK----VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQA 298
N+ +++ V K KK YTPFPPP + SK+D +ESGEYFL+ KE + +++
Sbjct: 777 NLSKRRVPRNVSDKSKKVYTPFPPPQEKSKVDLQIESGEYFLNNAAKERVAKERREDAMK 836
Query: 299 EKTAENKRKRDAAFIPP 315
EK E KRKR+ AF P
Sbjct: 837 EKMEERKRKREEAFEAP 853
>gi|315052040|ref|XP_003175394.1| 90S preribosome/SSU processome component KRR1 [Arthroderma gypseum
CBS 118893]
gi|311340709|gb|EFQ99911.1| ribosomal RNA assembly protein KRR1 [Arthroderma gypseum CBS
118893]
Length = 327
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/306 (62%), Positives = 241/306 (78%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKSGIACTLDLVEGSMTVKTTRKTFDPASILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQGNTVAAMG FKGLK+VR
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTSTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKELMIKRELAKDPQLAQESWDRFLPQLKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP + SK+D +ESGEYFL+++ KE + +E EKQ EK AE ++++
Sbjct: 243 KSKKVYTPFPPAQEKSKVDLQIESGEYFLTKQAKERARKEEIMEKQREKRAEKVKEQEKD 302
Query: 312 FIPPEE 317
FIPP+E
Sbjct: 303 FIPPKE 308
>gi|296817933|ref|XP_002849303.1| 90S preribosome/SSU processome component KRR1 [Arthroderma otae CBS
113480]
gi|238839756|gb|EEQ29418.1| ribosomal RNA assembly protein mis3 [Arthroderma otae CBS 113480]
Length = 349
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 242/308 (78%), Gaps = 7/308 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WP++ AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPSDNVGGTFTEESSFVSLFPKYREIYLREVWPLITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D++ CD
Sbjct: 64 EKNGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLARSVPAPQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT Y+LVQGNTVAAMG FKGLK+VR
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYLLVQGNTVAAMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+ KK+ + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKELMIKRELAKDPQLAEESWDRFLPQLKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP + SK+D +ESGEYFLS++ KE + +E EKQ EK AE ++++
Sbjct: 243 KSKKVYTPFPPAQEKSKVDLQIESGEYFLSKQAKERARKEEIMEKQREKRAEKMKEQEKD 302
Query: 312 FIPPEEPS 319
+IPP+E +
Sbjct: 303 YIPPKEDT 310
>gi|121715638|ref|XP_001275428.1| 90S preribosome/SSU processome component KRR1 [Aspergillus clavatus
NRRL 1]
gi|119403585|gb|EAW14002.1| rRNA assembly protein Mis3, putative [Aspergillus clavatus NRRL 1]
Length = 354
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/306 (61%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD + +ID WK++ F P N G E SSF+TLFP+YRE+YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTE-DIDKWKIDPFKPDDNVAGSFAEESSFATLFPKYREQYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+K RDLI+LLSRSVP QA+KILDDE+ CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTYDPAAILKGRDLIKLLSRSVPVQQALKILDDEVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI + VRNKERFVKRRQ L+GP+ STLKALE+LT YILVQGNTVAAMG +KGLK+VR
Sbjct: 124 IIKIRSQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQGNTVAAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R++ DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVINDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q K E ++R A
Sbjct: 243 KSKKAYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRVKREEKMQERAKA 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|119481157|ref|XP_001260607.1| 90S preribosome/SSU processome component KRR1 [Neosartorya fischeri
NRRL 181]
gi|119408761|gb|EAW18710.1| rRNA assembly protein Mis3, putative [Neosartorya fischeri NRRL
181]
Length = 358
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/304 (62%), Positives = 237/304 (77%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N G E SSF+TLFP+YRE+YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPDDNVAGSFAEESSFATLFPKYREQYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI N VRNKERFVKRRQ L+GP+ STLKALE+LT YILVQGNTVAAMG +KGLK+VR
Sbjct: 124 IIKIRNQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQGNTVAAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+V DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVNDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPYKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q +K E ++R +
Sbjct: 243 KSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRQKREEKMKERAKS 302
Query: 312 FIPP 315
F+PP
Sbjct: 303 FVPP 306
>gi|71001580|ref|XP_755471.1| rRNA assembly protein Mis3 [Aspergillus fumigatus Af293]
gi|66853109|gb|EAL93433.1| rRNA assembly protein Mis3, putative [Aspergillus fumigatus Af293]
gi|159129540|gb|EDP54654.1| rRNA assembly protein Mis3, putative [Aspergillus fumigatus A1163]
Length = 358
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/304 (62%), Positives = 237/304 (77%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E+F P N G E SSF+TLFP+YRE+YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEEFKPEDNVAGSFAEESSFATLFPKYREQYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI N VRNKERFVKRRQ L+GP+ STLKALE+LT YILVQGNTVAAMG +KGLK+VR
Sbjct: 124 IIKIRNQVRNKERFVKRRQRLLGPSGSTLKALELLTSTYILVQGNTVAAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+V DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVNDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPYKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q +K E ++R +
Sbjct: 243 KSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRQKREEKMKERAKS 302
Query: 312 FIPP 315
FIPP
Sbjct: 303 FIPP 306
>gi|259479960|tpe|CBF70657.1| TPA: rRNA assembly protein Mis3, putative (AFU_orthologue;
AFUA_2G11380) [Aspergillus nidulans FGSC A4]
Length = 358
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/304 (62%), Positives = 238/304 (78%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++K KPWD D +ID WK+E+F P N GG E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 NNKDKPWDTD-DIDKWKIEEFKPEDNAGGSFAEESSFATLFPKYREVYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLSRSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI N VRNKERFVKRRQ ++GP STLKALE+LTG YILVQGNTV+AMG +KGLK+VR
Sbjct: 124 IIKIRNQVRNKERFVKRRQRILGPQGSTLKALELLTGTYILVQGNTVSAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RIV+DCM N +HP+YHIK LM+K+EL KDP LA+E+WDRFLP FKK+ + ++ KV
Sbjct: 184 RIVDDCMAN-IHPIYHIKELMIKRELAKDPTLAHESWDRFLPNFKKRTLSKRRTPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q K E ++R+ A
Sbjct: 243 KSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRIKREEKMKEREKA 302
Query: 312 FIPP 315
F+ P
Sbjct: 303 FVAP 306
>gi|67539410|ref|XP_663479.1| hypothetical protein AN5875.2 [Aspergillus nidulans FGSC A4]
gi|40739194|gb|EAA58384.1| hypothetical protein AN5875.2 [Aspergillus nidulans FGSC A4]
Length = 348
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/304 (62%), Positives = 238/304 (78%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++K KPWD D +ID WK+E+F P N GG E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 NNKDKPWDTD-DIDKWKIEEFKPEDNAGGSFAEESSFATLFPKYREVYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLSRSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI N VRNKERFVKRRQ ++GP STLKALE+LTG YILVQGNTV+AMG +KGLK+VR
Sbjct: 124 IIKIRNQVRNKERFVKRRQRILGPQGSTLKALELLTGTYILVQGNTVSAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RIV+DCM N +HP+YHIK LM+K+EL KDP LA+E+WDRFLP FKK+ + ++ KV
Sbjct: 184 RIVDDCMAN-IHPIYHIKELMIKRELAKDPTLAHESWDRFLPNFKKRTLSKRRTPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ KE + +E E+Q K E ++R+ A
Sbjct: 243 KSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKERAQKEEVMERQRIKREEKMKEREKA 302
Query: 312 FIPP 315
F+ P
Sbjct: 303 FVAP 306
>gi|397640808|gb|EJK74329.1| hypothetical protein THAOC_03996 [Thalassiosira oceanica]
Length = 420
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/330 (58%), Positives = 246/330 (74%), Gaps = 27/330 (8%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNE----GGMLEVSSFSTLFPQYREKYLQ 65
KK+ K+ + KPWD + +IDHW+ +D + G +LE SSF+TLFP+YREKYL+
Sbjct: 24 GKKNHNKYRRDKPWD-NADIDHWENNPWDESTGDTLPGGRLLEESSFATLFPKYREKYLR 82
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
E WP+V L +Y ++CELNLVEGSMTV TTRKT DPYII+KARDLI+LL+RS+PAPQA+
Sbjct: 83 EVWPLVTRTLDKYKIACELNLVEGSMTVRTTRKTSDPYIILKARDLIKLLARSIPAPQAL 142
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 185
KIL+DE CDIIKIG LVRNKERFVKRRQ L+GP+ +TLKALE+LT CYILVQGNTV+ M
Sbjct: 143 KILNDEYNCDIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTQCYILVQGNTVSVM 202
Query: 186 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 245
G+ KG+K+VR +V +CM N +HPVY+IK LM+ KELEKDP L NE+W+RFLP F+KKN+
Sbjct: 203 GTHKGIKKVRTVVIECMNN-IHPVYNIKRLMIMKELEKDPKLQNESWERFLPTFQKKNLS 261
Query: 246 QK--------------------KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKK 285
++ KV+SK KK YTPFPP QPSKID L+SGEYFLSER++
Sbjct: 262 KRRKPRQVVEEAQKAAKNGGEGKVRSK-KKSYTPFPPAQQPSKIDLQLDSGEYFLSERER 320
Query: 286 ESKKWQEKQEKQAEKTAENKRKRDAAFIPP 315
++++ EK+ EK+ E +R R+ F+ P
Sbjct: 321 KARQLSEKKMASKEKSEEKRRAREMEFVHP 350
>gi|448511533|ref|XP_003866553.1| Krr1 protein [Candida orthopsilosis Co 90-125]
gi|380350891|emb|CCG21114.1| Krr1 protein [Candida orthopsilosis Co 90-125]
Length = 364
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/311 (60%), Positives = 241/311 (77%), Gaps = 7/311 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWAIEEFKPEHNASGLHFTEESSFMTLFPKYREQYLRSIWSDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHFIRCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KGLK+V
Sbjct: 124 DVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-- 252
RR+VEDCM+N +HP+Y+IK LM+K+EL+K+P LA+E+W RFLP FKK+NV +KKV K
Sbjct: 184 RRVVEDCMKN-IHPIYYIKELMIKQELQKNPELAHEDWSRFLPSFKKRNVARKKVSKKNK 242
Query: 253 -EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP QP K+D +ESGEYFL +R+KE KK QEK+ +Q E + +++R
Sbjct: 243 AEKKVYTPFPPAQQPRKVDLQIESGEYFLGKREKELKKLQEKRAQQEENSELKRQERAKD 302
Query: 312 FIPPEEPSRQN 322
++ PEE +N
Sbjct: 303 YVAPEEEDYEN 313
>gi|322700928|gb|EFY92680.1| rRNA assembly protein Mis3, putative [Metarhizium acridum CQMa 102]
Length = 320
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/306 (60%), Positives = 238/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD + +I+ WKV+ F N GG L E SSF+TLFP+YRE YL+EAWP++ +L
Sbjct: 5 HQKDKPWDTE-DINKWKVDTFTSEDNVGGTLAEESSFATLFPKYREVYLKEAWPLITKSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D M CD
Sbjct: 64 EKHGIACTLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILEDGMACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI NLV +K+RFVKRRQ ++GPN STLKALE+LT YILV GNTV AMG +KGLK++R
Sbjct: 124 VIKIRNLVGSKDRFVKRRQRILGPNGSTLKALELLTETYILVHGNTVCAMGGYKGLKELR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RIVEDCM N +HP+YHIK LM+K+EL KDP L NE+WDRFLP FKKK + ++ KV
Sbjct: 184 RIVEDCMAN-IHPIYHIKELMIKRELAKDPELVNESWDRFLPNFKKKTLSRRRVPHKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +ESGEYFL + K+ +E++EKQ + E ++R+A
Sbjct: 243 KSKKVYTPFPPAPEQSKVDKQIESGEYFLGKEAKDRAAKEERKEKQKLRKEEKTKEREAE 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|345560274|gb|EGX43399.1| hypothetical protein AOL_s00215g135 [Arthrobotrys oligospora ATCC
24927]
Length = 352
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/306 (59%), Positives = 243/306 (79%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD + +ID WK+++F P N+GG L+ S F LFP+YRE+YL+EAWP++ L
Sbjct: 5 HNVDKPWDTE-DIDKWKIDEFKPEDNKGGAFLQESDFKVLFPRYREQYLREAWPLITRTL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ G++ L++VEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D++ CD
Sbjct: 64 AKSGINAILDVVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKIG+LV N+++F KRRQ +VGPN STLKALE+LTGCYILVQG TV+AMG +KGLK++R
Sbjct: 124 IIKIGSLVPNRQKFAKRRQRMVGPNGSTLKALELLTGCYILVQGTTVSAMGGYKGLKEIR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM+N +HP+YHIK LM+K+EL KDPALANE+WDRFLP+FKKK + ++ KV
Sbjct: 184 RVVEDCMKN-IHPIYHIKELMIKRELAKDPALANESWDRFLPQFKKKTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K +K YTPFPP + SK+D +ESGEYFLS+ +KE ++K+E Q EK + +++R+
Sbjct: 243 KSRKVYTPFPPAQEKSKVDLQIESGEYFLSKPQKEQAAAEKKEEAQREKKEQRQKEREQD 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|354546423|emb|CCE43153.1| hypothetical protein CPAR2_207960 [Candida parapsilosis]
Length = 363
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/310 (60%), Positives = 240/310 (77%), Gaps = 6/310 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
HDK KPWD P+ID W VE+F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HDKDKPWD-TPDIDKWTVEEFKPEHNASGLHFAEESSFMTLFPKYREQYLRSIWSDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CEL+LVEG+MTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHHIRCELDLVEGAMTVKTTTKTFDPAMILKARDLIKLLARSVPFPQAVKILQDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KGLK+V
Sbjct: 124 DVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-- 252
RR+ EDCM+N +HP+Y+IK LM+K+EL+K+P LA+E+W RFLP FKK+NV +KKVK+
Sbjct: 184 RRVAEDCMKN-IHPIYYIKELMIKQELQKNPELAHEDWSRFLPSFKKRNVARKKVKTSKV 242
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
EKK YTPFPP QP K+D +ESGEYFL +R++E KK QEK+ Q E + +++R +
Sbjct: 243 EKKVYTPFPPAQQPRKVDLQIESGEYFLGKRERELKKIQEKRALQEENSELKRQERAKGY 302
Query: 313 IPPEEPSRQN 322
+ PEE +N
Sbjct: 303 VAPEEEQYEN 312
>gi|322706650|gb|EFY98230.1| rRNA assembly protein Mis3, putative [Metarhizium anisopliae ARSEF
23]
Length = 320
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/306 (61%), Positives = 234/306 (76%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H + KPWD D +ID WK++ F N GG E SSF TLFP+YRE YL+EAWP+V +L
Sbjct: 5 HQQDKPWDTD-DIDKWKIDTFTSKDNVGGTFAEESSFVTLFPKYREVYLKEAWPLVTKSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D M CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILEDGMACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI NLV +K+RFVKRRQ ++GPN STLKALE+LT YILV GNTV AMG +KGLK +R
Sbjct: 124 VIKIRNLVGSKDRFVKRRQRILGPNGSTLKALELLTETYILVHGNTVCAMGGYKGLKDLR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI+EDCM N +HP+YHIK LM+K+EL KDP L NE+WDRFLP FKKK + + KV
Sbjct: 184 RIIEDCMAN-IHPIYHIKELMIKRELAKDPELVNESWDRFLPNFKKKTLSHRRVPHKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SKIDK +ESGEYFL++ K+ +E+ EKQ + E ++R+A
Sbjct: 243 KTKKAYTPFPPAPEQSKIDKQIESGEYFLAKGAKDRAAREERNEKQKLRKEEKTKEREAE 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|366991194|ref|XP_003675363.1| hypothetical protein NCAS_0B09100 [Naumovozyma castellii CBS 4309]
gi|342301227|emb|CCC68994.1| hypothetical protein NCAS_0B09100 [Naumovozyma castellii CBS 4309]
Length = 327
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/317 (61%), Positives = 243/317 (76%), Gaps = 6/317 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P++D W +E+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWD-TPDVDKWHIEEFKPEDNASGLPFAEESSFMTLFPKYRETYLKSVWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LNKHNLGCVLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG F+GLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPFQGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K K
Sbjct: 184 RRVVEDCMKN-VHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKVRK 242
Query: 255 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+ YTPFPP P K+D +ESGEYFLS+R+KE KK E++E+QAEK AE + +R+ +
Sbjct: 243 EKKIYTPFPPAQLPRKVDLEIESGEYFLSKREKEMKKLHERREQQAEKQAEKEVERNKNY 302
Query: 313 IPPEEPSRQNSCEAEDK 329
I PEE + ++S + E K
Sbjct: 303 IAPEEETYKSSLKKEHK 319
>gi|295667095|ref|XP_002794097.1| 90S preribosome/SSU processome component KRR1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226286203|gb|EEH41769.1| ribosomal RNA assembly protein KRR1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 356
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/306 (62%), Positives = 236/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E W MV AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEHNAGGTFTEESSFVSLFPKYREAYLKETWLMVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ +TLKALE+LT YILVQGNTV+AMG +KGLK++R
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGTTLKALELLTNTYILVQGNTVSAMGPYKGLKEIR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVEDCMAN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS++ KE K +E EKQ EK R+
Sbjct: 243 KSKKVYTPFPPAPEKSKVDLQIESGEYFLSKQAKERAKKEEMMEKQREKRENKTRELQKD 302
Query: 312 FIPPEE 317
F PP+E
Sbjct: 303 FEPPKE 308
>gi|425781142|gb|EKV19124.1| RRNA assembly protein Mis3, putative [Penicillium digitatum PHI26]
gi|425783173|gb|EKV21033.1| RRNA assembly protein Mis3, putative [Penicillium digitatum Pd1]
Length = 376
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/306 (61%), Positives = 234/306 (76%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+K K WD D +ID WK+E+F P N G E SSF TLFP+YRE+YL+EAWP+V AL
Sbjct: 5 HNKEKAWDTD-DIDKWKIEEFKPEHNAAGSFAEESSFMTLFPKYREQYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+K+RDLI+LL+RSVP QA+KIL+D + CD
Sbjct: 64 EKQGIACTLDLVEGSMTVKTTRKTYDPAAIIKSRDLIKLLARSVPVTQAMKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI N VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTVA MG FKGLK+VR
Sbjct: 124 VIKIRNQVRNKERFVKRRQRILGPNGSTLKALELLTSTYILVQGNTVAVMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI++DCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+ + ++ KV
Sbjct: 184 RIIDDCMAN-IHPIYHIKELMIKRELAKDPTLAEESWDRFLPNFKKRTLSKRRVPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
KEKK YTPFPP P+ SK+D +ESGEYFLS+ KE +E E+Q K E R+R+
Sbjct: 243 KEKKTYTPFPPAPEKSKVDLQIESGEYFLSKEAKERVHKEEVVERQRLKRDEKMREREKD 302
Query: 312 FIPPEE 317
F+ PEE
Sbjct: 303 FVAPEE 308
>gi|296420562|ref|XP_002839838.1| 90S preribosome/SSU processome component KRR1 [Tuber melanosporum
Mel28]
gi|295636044|emb|CAZ84029.1| unnamed protein product [Tuber melanosporum]
Length = 344
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 244/306 (79%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
HDK KPWD D +ID WK+E+F P N+ G +E SSF+TLFP+YRE YL+EAWP++ L
Sbjct: 5 HDKEKPWDTD-DIDKWKIEEFKPEDNKAGAFIEESSFATLFPKYRETYLREAWPLITRTL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++ ++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP PQAIKIL+D + CD
Sbjct: 64 EKHHIACTLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPVPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKIGNLVRNKERFVKRRQ ++GP STLKALE+LTGCYILVQG+TV+AMG +KGLK+VR
Sbjct: 124 IIKIGNLVRNKERFVKRRQRILGPGGSTLKALELLTGCYILVQGSTVSAMGGYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV----KQKKVKS 251
R+VE CM N +HP+YHIK LM+K+EL+KDP L NENWDRFLP+FKK+ + K +K+
Sbjct: 184 RVVEGCMDN-IHPIYHIKELMIKRELQKDPELVNENWDRFLPQFKKRTLSKRKKPRKITD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SKID +ESGEYFLS++ KE E++EK+ EK E K++R+
Sbjct: 243 KSKKTYTPFPPAPEKSKIDLQIESGEYFLSKQSKERAARDEREEKRKEKKEEKKKEREKD 302
Query: 312 FIPPEE 317
F+PP E
Sbjct: 303 FVPPLE 308
>gi|145232010|ref|XP_001399471.1| 90S preribosome/SSU processome component KRR1 [Aspergillus niger
CBS 513.88]
gi|134056381|emb|CAK47615.1| unnamed protein product [Aspergillus niger]
gi|350634424|gb|EHA22786.1| hypothetical protein ASPNIDRAFT_55540 [Aspergillus niger ATCC 1015]
Length = 367
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/306 (61%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WKVE F N G E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKVEPFQAEDNVAGSFAEESSFATLFPKYREVYLKEAWPVVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+KARDLI+LLSRSVP QA+KIL+D++ CD
Sbjct: 64 EKFGIACTLDLVEGSMTVKTTRKTFDPAAILKARDLIKLLSRSVPVQQALKILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI N VRNKERFVKRRQ ++GP STLKALE+LT YILVQGNTV+AMG +KGLK+VR
Sbjct: 124 IIKIRNQVRNKERFVKRRQRILGPGGSTLKALELLTSTYILVQGNTVSAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI+ DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RIINDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRVPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ K+ ++ +E E+Q K E ++R+ A
Sbjct: 243 KTKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRQQKEEVMERQRLKREEKMKEREKA 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|320592210|gb|EFX04649.1| rRNA assembly protein [Grosmannia clavigera kw1407]
Length = 327
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/306 (62%), Positives = 234/306 (76%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+K KPWD D +ID WKVE F P N GG LE SSFSTLFP+YRE YL+EAWP V AL
Sbjct: 5 HEKDKPWDTD-DIDKWKVEPFKPEDNVGGSFLEESSFSTLFPKYREVYLREAWPGVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++CEL+LV G+MTV TTR+T DP I+ ARDLIRLLSRSVPAPQA+++L++ + D
Sbjct: 64 QKHGIACELDLVTGTMTVKTTRRTYDPAAILNARDLIRLLSRSVPAPQALRVLEEGVAAD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI +LVRNKERFVKRRQ ++GP STLKALEILT YILVQG TVA MG F+GLK VR
Sbjct: 124 IIKIRSLVRNKERFVKRRQRILGPGGSTLKALEILTETYILVQGGTVAVMGPFRGLKDVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+Y IK LMVK+EL KDP LA E+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVEDCMAN-VHPIYMIKELMVKRELAKDPQLATESWDRFLPNFKKRTLSKRRVPLKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KPYT FPP P+ SK+D +E+GEYFLS+ K+ E+QEK +K + KR+R+
Sbjct: 243 KAAKPYTAFPPAPEKSKVDLQIETGEYFLSKEAKKRATETERQEKAHQKKEDKKREREKD 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|380492294|emb|CCF34707.1| ribosomal RNA assembly protein KRR1 [Colletotrichum higginsianum]
Length = 323
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/306 (61%), Positives = 235/306 (76%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK++ F P N GG E SSF+ +FP+YRE YL+EAWP+V AL
Sbjct: 5 YKKEKPWDTD-DIDKWKIDTFTPADNAGGTFAEESSFAIVFPKYREVYLKEAWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKTGIACSLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI NLVRNKER+VKRRQ ++GPN STLKALE+LT YILVQG+TV+ MG FKGLK+VR
Sbjct: 124 VIKIRNLVRNKERYVKRRQRILGPNGSTLKALELLTQTYILVQGSTVSVMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + + KV
Sbjct: 184 RVVEDCMAN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSSRRVPLKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +E+GEYFL + K E+ E+Q +K E R+R+
Sbjct: 243 KTKKVYTPFPPAPEKSKVDKQIETGEYFLGKEAKAKAAQAERMEQQKQKKVERLREREKE 302
Query: 312 FIPPEE 317
+IPPEE
Sbjct: 303 YIPPEE 308
>gi|400593186|gb|EJP61181.1| rRNA assembly protein Mis3, putative [Beauveria bassiana ARSEF
2860]
Length = 320
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/309 (59%), Positives = 238/309 (77%), Gaps = 7/309 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
HD+ KPWD + ++D WK+EKF P N GG E SSF TLFP+YRE YL+EAWP++ AL
Sbjct: 5 HDRDKPWDTE-DVDKWKIEKFKPEDNAGGTFAEESSFMTLFPKYREVYLREAWPLITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSM V TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 EKNGIACTLDLVEGSMMVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI NLV NK+RFVKRRQ ++GP+ STLKALE+LT YILV GNTV+ MG +KGLK+VR
Sbjct: 124 VIKIRNLVGNKDRFVKRRQRILGPDGSTLKALELLTETYILVHGNTVSVMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKS 251
R+VEDCM N +HP+Y+IK LM+K+EL KDP L NE+WDRFLP FK+K + +++ +
Sbjct: 184 RVVEDCMAN-IHPIYYIKELMIKRELAKDPELKNESWDRFLPNFKRKTLSRRRTPHNITD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +ESGEYFLS++ K+ E+ EKQ + E ++R+A
Sbjct: 243 KTKKVYTPFPPAPEKSKVDKQIESGEYFLSKQAKQQAARTERLEKQKLRKTEKAKEREAD 302
Query: 312 FIPPEEPSR 320
F+PPEE R
Sbjct: 303 FVPPEEGER 311
>gi|19112865|ref|NP_596073.1| rRNA processing protein Mis3 [Schizosaccharomyces pombe 972h-]
gi|26396376|sp|O74777.1|KRR1_SCHPO RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein mis3
gi|3738208|emb|CAA21263.1| rRNA processing protein Mis3 [Schizosaccharomyces pombe]
gi|5578744|dbj|BAA82594.1| Mis3 [Schizosaccharomyces pombe]
Length = 327
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/314 (63%), Positives = 247/314 (78%), Gaps = 5/314 (1%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAW 68
VNK + + DKP WD D +IDHWK+E F ++ LE SSF+TLFP+YREKYL+E W
Sbjct: 14 VNKNKRYRRDKP--WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVW 70
Query: 69 PMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL 128
P V AL ++G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KI+
Sbjct: 71 PHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIM 130
Query: 129 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF 188
D + CDIIKIGN++RNKERFVKRRQ L+G N TLKALE+LT CYILVQG TVA MG +
Sbjct: 131 QDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGY 190
Query: 189 KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK 248
KGLK+VRRIVEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP+FKK+NV ++K
Sbjct: 191 KGLKEVRRIVEDCMHN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRK 249
Query: 249 -VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 307
K +E K YTPFPP PSK+D +ESGEYFL + +KE KK EK+E+Q EK E +++
Sbjct: 250 PAKIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309
Query: 308 RDAAFIPPEEPSRQ 321
R AFIPPEE S++
Sbjct: 310 RMKAFIPPEESSKK 323
>gi|367002377|ref|XP_003685923.1| 90S preribosome/SSU processome component KRR1 [Tetrapisispora
phaffii CBS 4417]
gi|357524222|emb|CCE63489.1| hypothetical protein TPHA_0E04000 [Tetrapisispora phaffii CBS 4417]
Length = 316
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/313 (61%), Positives = 241/313 (76%), Gaps = 6/313 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD + +ID WK+E F P N GM E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKEKPWDTE-DIDKWKLEDFKPEDNASGMPFSEESSFMTLFPKYREVYLKSVWKDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ V+C LNLV+GSMTVSTTRKT DPYII+KARDLI+LL+RSVP PQA+KILDD+M C
Sbjct: 64 LDKHHVACTLNLVDGSMTVSTTRKTYDPYIILKARDLIKLLARSVPFPQAVKILDDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG FKGLK++
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPFKGLKEI 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VED M+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K ++
Sbjct: 184 RRVVEDAMRN-VHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKSKKPKR 242
Query: 255 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+ YTPFPP P K+D +ESGEYFLS+++KE K+ E++++QAEK AE +R +
Sbjct: 243 EKKVYTPFPPSQLPRKVDLEIESGEYFLSKKEKEVKRLHERRDQQAEKQAEKDIERSKNY 302
Query: 313 IPPEEPSRQNSCE 325
I P+E +S E
Sbjct: 303 IAPKEEKYVSSIE 315
>gi|440790291|gb|ELR11574.1| KH domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 406
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/375 (55%), Positives = 279/375 (74%), Gaps = 11/375 (2%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQE 66
T KK+ K+ K KPWD D +IDHWKV+ F P N+ G LE SSF+TLFP+YRE YL+E
Sbjct: 15 TPQKKNHKKYRKDKPWDND-SIDHWKVDAFKPEDNKAGSFLEESSFATLFPKYRESYLRE 73
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
+W + ALK+ G+ C LNL+EGSMTV TTRKT DPY+I+KARD+I+LL+RSVP PQA++
Sbjct: 74 SWAAITKALKDVGIDCTLNLIEGSMTVRTTRKTWDPYMILKARDMIKLLARSVPFPQAVR 133
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
+L D++ CD+IKIG +V NKERFVKRRQ L+GPN +TLKA+E+LT CY+LVQGNTV+ MG
Sbjct: 134 VLGDDVACDVIKIGGMVHNKERFVKRRQRLIGPNGATLKAIELLTECYVLVQGNTVSVMG 193
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
+KGLKQVR IVEDCM N +HP+Y+IK LM+K+EL KDP LA ENWDRFLPKFKK NVK+
Sbjct: 194 PYKGLKQVRNIVEDCMNN-IHPIYNIKALMIKRELAKDPQLATENWDRFLPKFKKNNVKK 252
Query: 247 KKVKSK-EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 305
K K K EKK YTPFPP QPSK+D LESGEY+L+E +K+ +K +EK +K+ E + K
Sbjct: 253 KAAKPKREKKEYTPFPPAQQPSKLDMQLESGEYWLTEAEKKKQKDKEKAQKKWEAKMQKK 312
Query: 306 RKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAAS 365
+R+ AF+ P+E ++ + E+ T ++AA +K++ RK++ A+ E+++ S
Sbjct: 313 AEREKAFVAPKEEPKKKEAQKEETTMELAA---KVKQQHANKRKREGAKQAKAEDFVLGS 369
Query: 366 G----EKPSKKKKSK 376
+ P+ KK+ K
Sbjct: 370 SSSKVDAPAAKKQKK 384
>gi|414880760|tpg|DAA57891.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea mays]
Length = 294
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/283 (70%), Positives = 243/283 (85%), Gaps = 8/283 (2%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTVSTTRKTRDP+ I+KAR+LI+LLSRSVPAPQAIKILDDEM CDIIKIG LVRNKERFV
Sbjct: 1 MTVSTTRKTRDPFAIIKARELIKLLSRSVPAPQAIKILDDEMNCDIIKIGGLVRNKERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG--LKQVRRIVEDCMQNKMHP 208
KRR+ L+GPN STLKA+EILTGCYILVQGNTVAAMG+++G LKQVRRIVEDCM+N HP
Sbjct: 61 KRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGNYRGRGLKQVRRIVEDCMKNVKHP 120
Query: 209 VYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSK 268
VYHIK L++K+EL K+PALANENWDRFLPKFKKKNVKQKK ++KEKKPYTPFPPP QPSK
Sbjct: 121 VYHIKELLIKRELAKNPALANENWDRFLPKFKKKNVKQKKPQTKEKKPYTPFPPPQQPSK 180
Query: 269 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE----PSRQNSC 324
ID LE+GEYF+S++KK +KKWQEK +KQ+ + ENKRKR+AAF+PP+E PS+ +
Sbjct: 181 IDLELENGEYFMSDKKKSAKKWQEKLDKQSGRAEENKRKREAAFVPPKENTAGPSKSDKN 240
Query: 325 EAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGE 367
+++ +++A +AKSLK KAK+ RK + E++ E YIA++ E
Sbjct: 241 ASDN--SEIADIAKSLKRKAKEFRKNEAQESVIAESYIASNDE 281
>gi|430812870|emb|CCJ29739.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 329
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/296 (64%), Positives = 234/296 (79%), Gaps = 2/296 (0%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD + IDHWK+E F N + SSF+TLFP+YREKYLQE WP V L YG+S
Sbjct: 28 PWDSE-EIDHWKIEPFVEDKNAPSFTDESSFATLFPKYREKYLQEIWPHVTQNLNNYGIS 86
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
C L+L+ GSMTV TTRKT+DP I+KARDLI+LL+RSVP PQAIKI+DD M CDIIKIG
Sbjct: 87 CVLDLIVGSMTVKTTRKTKDPCSILKARDLIKLLARSVPFPQAIKIMDDSMACDIIKIGG 146
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC 201
+RNKERF+KRRQ ++GPN STLKALE+LT CYI+VQGNTV+ MG++KGLK+VR+IVEDC
Sbjct: 147 FLRNKERFIKRRQRILGPNGSTLKALELLTQCYIMVQGNTVSVMGNYKGLKEVRKIVEDC 206
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFP 261
M+N +HP+YHIK LM+K+EL KDP L NE+WDRFLP FKK+NV ++K K + K YTPFP
Sbjct: 207 MKN-IHPIYHIKELMIKRELAKDPVLKNESWDRFLPHFKKRNVARRKPKQIKIKEYTPFP 265
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
PP QPSKID +ESGEYF+S+R KE KK +E +EKQA + E ++R AF PP+E
Sbjct: 266 PPQQPSKIDLQIESGEYFMSKRAKEKKKREENKEKQARISKERSKERQKAFEPPKE 321
>gi|449682115|ref|XP_004210000.1| PREDICTED: KRR1 small subunit processome component homolog, partial
[Hydra magnipapillata]
Length = 402
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/324 (60%), Positives = 249/324 (76%), Gaps = 6/324 (1%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD + IDHWKVE F N G++E SSF+TLFP+YRE YL+E WP+VK L + +
Sbjct: 69 PWDHE-GIDHWKVEPFTEADNPHGLIEESSFATLFPKYRETYLREVWPLVKEKLGSHHIR 127
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
C L++VEGSMTV+TTRKT DPYII+KARD+I+L+SR V Q+ ++L+D++ CDIIKI N
Sbjct: 128 CALDVVEGSMTVATTRKTFDPYIILKARDMIKLMSRGVSYEQSCRVLEDDVACDIIKIRN 187
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC 201
LVRNKERF+KRRQ L+GPN +TLKALE+LT CYILVQG TV+A+GSFKGLKQVR +VE+
Sbjct: 188 LVRNKERFIKRRQRLIGPNGATLKALELLTECYILVQGGTVSAIGSFKGLKQVRNVVEET 247
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFP 261
M+N +HP+Y+IKI+M+K+EL KDP L NENW RFLPKFK KNV++KK K KEKKPYTPFP
Sbjct: 248 MKN-IHPIYNIKIMMIKRELAKDPTLKNENWSRFLPKFKNKNVQRKKPKIKEKKPYTPFP 306
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PS 319
PP Q SKID L SGEYFL++ +K K+ + K++KQ E + K KR +FIPP E P+
Sbjct: 307 PPQQESKIDIQLASGEYFLNKEEKVLKERENKKKKQEEAGVQRKIKRQQSFIPPSEVKPN 366
Query: 320 RQNSCEAEDKTN--DVAAMAKSLK 341
+N E K+ DV + K++K
Sbjct: 367 DKNDTETSKKSTSVDVNVLKKNIK 390
>gi|71018315|ref|XP_759388.1| hypothetical protein UM03241.1 [Ustilago maydis 521]
gi|46099113|gb|EAK84346.1| hypothetical protein UM03241.1 [Ustilago maydis 521]
Length = 364
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/315 (60%), Positives = 239/315 (75%), Gaps = 15/315 (4%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KH K KPWD+D I+HW+V KF +G LE SSF+TLFP+YRE+YL+E W V AL
Sbjct: 19 KHRKDKPWDDD-TINHWEVPKFSADEIKGPFLEESSFATLFPKYRERYLKEVWGHVTSAL 77
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DPYI++KARD+IRLLSRSVP PQA+KIL+D ++CD
Sbjct: 78 EKHGIACTLDLVEGSMTVKTTRKTYDPYIVLKARDMIRLLSRSVPFPQAVKILEDGIECD 137
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKIGNL+RNKERFVKRRQ ++GPN STLKA+E+LT CY+LVQGNTV AMG FK LK+VR
Sbjct: 138 VIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTNCYVLVQGNTVCAMGQFKNLKEVR 197
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK------------- 242
RIV DC++N +HP+YHIK LM+K+EL KDP LA ENW+RFLPKFKK+
Sbjct: 198 RIVIDCLKN-IHPIYHIKELMIKRELAKDPKLAQENWERFLPKFKKQNQKKKPTTTDAEG 256
Query: 243 NVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 302
++ K + K YTPFPPP QPSKID LESGEYFL R+K+ +K KQA+
Sbjct: 257 EARKNDKKVIKPKTYTPFPPPQQPSKIDLQLESGEYFLKPRQKKQAAEAQKLAKQADHKE 316
Query: 303 ENKRKRDAAFIPPEE 317
+ +++R AF+PP E
Sbjct: 317 KREQERQKAFVPPTE 331
>gi|255938969|ref|XP_002560254.1| Pc15g00270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584876|emb|CAP82913.1| Pc15g00270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 372
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/306 (61%), Positives = 233/306 (76%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+K K WD D +ID WK+E+F P N G E SSF TLFP+YRE+YL+EAWP++ AL
Sbjct: 5 HNKEKAWDTD-DIDKWKIEEFKPEHNAAGSFAEESSFMTLFPKYREQYLKEAWPVITRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVP QA+KIL+D + CD
Sbjct: 64 EKQGIACTLDLVEGSMTVKTTRKTYDPAAIIKARDLIKLLARSVPVTQAMKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI N VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTVA MG FKGLK+VR
Sbjct: 124 VIKIRNQVRNKERFVKRRQRILGPNGSTLKALELLTSTYILVQGNTVAVMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI++DCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+ + ++ KV
Sbjct: 184 RIIDDCMAN-IHPIYHIKELMIKRELAKDPTLAEESWDRFLPNFKKRTLSKRHVPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ KE +E E+Q K E R+R+
Sbjct: 243 KTKKTYTPFPPAPEKSKVDLQIESGEYFLSKEAKERVHKEEVVERQRLKRDEKMREREKD 302
Query: 312 FIPPEE 317
F+ PEE
Sbjct: 303 FVAPEE 308
>gi|365981169|ref|XP_003667418.1| hypothetical protein NDAI_0A00150 [Naumovozyma dairenensis CBS 421]
gi|343766184|emb|CCD22175.1| hypothetical protein NDAI_0A00150 [Naumovozyma dairenensis CBS 421]
Length = 317
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/311 (61%), Positives = 241/311 (77%), Gaps = 6/311 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD + I+ WK+E+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTE-EINKWKIEEFKPEDNASGLPFAEESSFMTLFPKYRETYLKSVWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL+D+M C
Sbjct: 64 LNTHNLACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILEDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K +K
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKVKK 242
Query: 255 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+ YTPFPP P K+D +ESGEYFLS+R+KE KK E++E+QAEK E + +R+ +
Sbjct: 243 EKKIYTPFPPAQLPRKVDLEIESGEYFLSKREKEMKKLNERREQQAEKQVEKETERNKDY 302
Query: 313 IPPEEPSRQNS 323
+ P EP+ ++S
Sbjct: 303 VAPSEPTYKSS 313
>gi|440639323|gb|ELR09242.1| hypothetical protein GMDG_03815 [Geomyces destructans 20631-21]
Length = 386
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/306 (61%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK++ F P N+ G E S+F+TLFP+YRE YL+EAWP+V +L
Sbjct: 5 HKKEKPWDTD-DIDKWKIDAFKPEDNKAGTFTEESTFATLFPKYREVYLREAWPLVTRSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + D
Sbjct: 64 EKFGIACTLDLVEGSMTVKTTRKTYDPASILNARDLIKLLARSVPAPQAVKILEDGVASD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GPN STLKALE+LT CYILVQGNTV+AMG +KGLK++R
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYILVQGNTVSAMGPYKGLKELR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI+EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+N+ ++ KV
Sbjct: 184 RIIEDCMSN-IHPIYHIKELMIKRELAKDPELAGESWDRFLPHFKKRNLSKRRVPLKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK TPFPPP + SK+D +ESGEYFL++ KE +++ E+Q EK E KR+
Sbjct: 243 KSKKVRTPFPPPQEKSKVDLQIESGEYFLNKSAKERAVQEDRLERQKEKKIEKLAKREKE 302
Query: 312 FIPPEE 317
F P+E
Sbjct: 303 FKAPDE 308
>gi|395330640|gb|EJF63023.1| hypothetical protein DICSQDRAFT_56643 [Dichomitus squalens LYAD-421
SS1]
Length = 386
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/345 (55%), Positives = 245/345 (71%), Gaps = 33/345 (9%)
Query: 2 GENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYR 60
G + VNK + H K KPWD D +IDHWK++ F P N+ G E SSF+TLFP+YR
Sbjct: 5 GSDAAPVVNKNKR--HRKDKPWDTD-DIDHWKIDPFQPDDNKAGPFTEESSFATLFPKYR 61
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKYL+E W V AL +G++C L+L+ GSM V TTRKT DPYII+KARD+I+LL+R V
Sbjct: 62 EKYLREVWSAVTQALDPHGIACTLDLIHGSMAVRTTRKTYDPYIILKARDMIKLLARGVA 121
Query: 121 APQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN 180
QA+KIL+D++ CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQGN
Sbjct: 122 VAQAVKILNDDVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGN 181
Query: 181 TVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFK 240
TV MG +KGLK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLPKF+
Sbjct: 182 TVGVMGPYKGLKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPQLATESWDRFLPKFR 240
Query: 241 KKNVK--QKKVKSKEK--------------------------KPYTPFPPPPQPSKIDKL 272
K+++K +K + E+ K YTPFPPP QP K+D
Sbjct: 241 KRHLKTSEKTARKNERVQEKNEARKAAGLPTLEEAKKERKEKKVYTPFPPPQQPRKVDLQ 300
Query: 273 LESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
LESGEYFL +KE+++ ++++EKQ E TAE + KR AF+ PEE
Sbjct: 301 LESGEYFLKAHQKEAREAKKRKEKQEEVTAERQAKRAEAFVAPEE 345
>gi|406865668|gb|EKD18709.1| ribosomal RNA assembly protein KRR1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 350
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/282 (64%), Positives = 227/282 (80%), Gaps = 7/282 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E+F P N GG E SSF+TLFP+YRE YL+EAWP++ +L
Sbjct: 5 HKKEKPWDTD-DIDKWKIEEFKPDDNAGGTFAEESSFATLFPKYREIYLREAWPLITRSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++YG++C L+LVEGSMTV TTRKT DP ++ ARDLI+LL+RSVPAPQA+KIL+D M CD
Sbjct: 64 EKYGIACSLDLVEGSMTVKTTRKTFDPAAVLNARDLIKLLARSVPAPQAVKILEDGMACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKE+FVKRRQ ++GPN STLKALE+LT CY+LVQGNTVAAMG +KGLK+VR
Sbjct: 124 IIKIRNLVRNKEKFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVAAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI+EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP FKK+N+ ++ KV
Sbjct: 184 RIIEDCMNN-IHPIYHIKELMIKRELAKDPELAGESWDRFLPHFKKRNLSKRRVPLKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 293
K KK YTPFPP + SKIDK LESGEYF+ + +E + +E+
Sbjct: 243 KSKKVYTPFPPKQEESKIDKQLESGEYFMGKMARERAQREER 284
>gi|307106027|gb|EFN54274.1| hypothetical protein CHLNCDRAFT_58322 [Chlorella variabilis]
Length = 424
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 196/297 (65%), Positives = 241/297 (81%), Gaps = 8/297 (2%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD + IDHWK+E F N G+LE SSF+TLFP+YREKYL+E WP V ALKE G++
Sbjct: 34 PWDHE-GIDHWKIEPFKKEDNPSGLLEESSFATLFPKYREKYLREVWPAVTKALKEQGIA 92
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
CELNLVEGSMTV TTRKT DP+II+KARDLI+LL+RS A+K+L+DE+QCD+IKIG
Sbjct: 93 CELNLVEGSMTVRTTRKTYDPFIILKARDLIKLLARS-----ALKVLEDEVQCDVIKIGG 147
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC 201
+VRNKE+FVKRRQ L+GPN +TLKALE+LTGCYILVQGNTV+AMG +KGLKQVRRIVEDC
Sbjct: 148 IVRNKEKFVKRRQRLIGPNGATLKALELLTGCYILVQGNTVSAMGDYKGLKQVRRIVEDC 207
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-VKSKEKKPYTPF 260
++N +HP+YHIK LM+K+EL KDPALA ENW+RFLP FKKKNV++KK K +E+K YTPF
Sbjct: 208 VRN-VHPIYHIKTLMIKRELAKDPALAEENWERFLPNFKKKNVQRKKPKKVRERKDYTPF 266
Query: 261 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
PPP PSK D +LESGEYFLS +K ++ + +QA + E +R+R+AAF P E
Sbjct: 267 PPPQPPSKEDLMLESGEYFLSAEQKAARAAAAQATRQAARVEERQRQREAAFQAPAE 323
>gi|302697271|ref|XP_003038314.1| 90S preribosome/SSU processome component KRR1 [Schizophyllum
commune H4-8]
gi|300112011|gb|EFJ03412.1| hypothetical protein SCHCODRAFT_46498 [Schizophyllum commune H4-8]
Length = 399
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/340 (55%), Positives = 246/340 (72%), Gaps = 31/340 (9%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYL 64
E+ V K+K H K KPWD D +IDHWK++ F P N+GG E SSF+TLFP+YREKYL
Sbjct: 4 EEVVVNKNKA-HRKDKPWDTD-DIDHWKIDPFTPADNKGGTFFEESSFATLFPKYREKYL 61
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
+E W V AL +GV+C L+LV GSM V TTRKT DPYII+KARD+I+LL+R V QA
Sbjct: 62 KEVWGAVTRALDHHGVACTLDLVHGSMAVRTTRKTYDPYIILKARDMIKLLARGVAVAQA 121
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA 184
+KILDD M CDIIKIG+LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+
Sbjct: 122 VKILDDNMACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSV 181
Query: 185 MGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 244
MG +K LK+VRRIV DCM+N +HP+Y IK LM+++EL KDP LANE+WDRFLP F+K+++
Sbjct: 182 MGPYKSLKEVRRIVLDCMKN-IHPIYRIKELMIRRELAKDPKLANESWDRFLPAFRKRHL 240
Query: 245 KQKKVKSKEKK---------------------------PYTPFPPPPQPSKIDKLLESGE 277
K + +K+ + YTPFPPP QP K+D LESGE
Sbjct: 241 KTSEKTAKKNERAAAKGEARAAAGLDPEKVEKEKSKKKVYTPFPPPQQPRKVDLQLESGE 300
Query: 278 YFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
YFL +++E+K+ Q+++EKQA+ A+ + +R+AA++ P E
Sbjct: 301 YFLKPKEREAKEAQKRKEKQADVAAQRQAEREAAYVAPAE 340
>gi|346319385|gb|EGX88987.1| rRNA assembly protein Mis3, putative [Cordyceps militaris CM01]
Length = 363
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/306 (59%), Positives = 233/306 (76%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E+F P N GG + SSF TLFP+YRE YL+EAWP++ AL
Sbjct: 47 HKKEKPWDTD-DIDKWKIEQFKPEDNLGGTFTDESSFMTLFPKYREVYLKEAWPLITKAL 105
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSM V TTRKT DP I+ ARDLI+LL+RSVPAPQA+KILDD + CD
Sbjct: 106 EKTGIACTLDLVEGSMMVKTTRKTFDPAAILNARDLIKLLARSVPAPQAVKILDDGVACD 165
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
++KI NLV NK RFVKRRQ ++GP STLKALE+LT YILV GNTV+ MG +KGLK+VR
Sbjct: 166 VVKIRNLVGNKVRFVKRRQRILGPEGSTLKALELLTETYILVHGNTVSVMGPYKGLKEVR 225
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKS 251
RI+EDCM N +HP+YHIK LM+K+EL KDP L NE+WDRFLP F++K + +++ +
Sbjct: 226 RIIEDCMAN-IHPIYHIKELMIKRELAKDPELKNESWDRFLPNFRRKTLSKRRTPHAITD 284
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +E+GEYFL ++ K E+QE+Q E+ E ++R A
Sbjct: 285 KTKKTYTPFPPAPEKSKVDKQIETGEYFLGKQAKLQAARAERQEQQKERKVEKAKERAAD 344
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 345 FVPPEE 350
>gi|6319791|ref|NP_009872.1| Krr1p [Saccharomyces cerevisiae S288c]
gi|140400|sp|P25586.1|KRR1_YEAST RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548400|sp|B3LU25.1|KRR1_YEAS1 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548401|sp|B5VEQ2.1|KRR1_YEAS6 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548402|sp|C8Z430.1|KRR1_YEAS8 RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548403|sp|E7LRT8.1|KRR1_YEASV RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|378548404|sp|E7QBZ1.1|KRR1_YEASZ RecName: Full=KRR1 small subunit processome component; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Ribosomal RNA assembly protein KRR1
gi|5300|emb|CAA42386.1| KRR1 [Saccharomyces cerevisiae]
gi|51013297|gb|AAT92942.1| YCL059C [Saccharomyces cerevisiae]
gi|151943775|gb|EDN62075.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406389|gb|EDV09656.1| ribosomal RNA assembly protein mis3 [Saccharomyces cerevisiae
RM11-1a]
gi|207347410|gb|EDZ73592.1| YCL059Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259144881|emb|CAY78146.1| Krr1p [Saccharomyces cerevisiae EC1118]
gi|285810642|tpg|DAA07426.1| TPA: Krr1p [Saccharomyces cerevisiae S288c]
gi|323338580|gb|EGA79798.1| Krr1p [Saccharomyces cerevisiae Vin13]
gi|323356023|gb|EGA87829.1| Krr1p [Saccharomyces cerevisiae VL3]
gi|365766811|gb|EHN08304.1| Krr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 316
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
FI PEE
Sbjct: 303 FIAPEE 308
>gi|319411597|emb|CBQ73641.1| probable KRR1-required for 40S ribosome biogenesis [Sporisorium
reilianum SRZ2]
Length = 354
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 198/328 (60%), Positives = 242/328 (73%), Gaps = 18/328 (5%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KH K KPWD+D I+HW V KF +G +LE SSF+TLFP+YRE+YL+E W V AL
Sbjct: 19 KHRKDKPWDDD-TINHWDVPKFTADEIKGPLLEESSFATLFPKYRERYLKEVWGHVTSAL 77
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++G++C L+LVEGSMTV TTRKT DPY I+KARD+IRLLSRSVP PQA+KIL+D ++CD
Sbjct: 78 DKHGIACTLDLVEGSMTVKTTRKTYDPYSILKARDMIRLLSRSVPFPQAVKILEDGVECD 137
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKIGNL+RNKERFVKRRQ ++GPN STLKA+E+LT CY+LVQGNTV+AMG FK LK+VR
Sbjct: 138 VIKIGNLLRNKERFVKRRQRIIGPNGSTLKAIELLTNCYVLVQGNTVSAMGQFKNLKEVR 197
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK- 254
RIV DC++N +HP+YHIK LM+K+EL KDP LA ENWDRFLPKFKK+N K+K S +
Sbjct: 198 RIVIDCLKN-IHPIYHIKELMIKRELAKDPKLAEENWDRFLPKFKKQNQKKKPTASTSEA 256
Query: 255 ------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 302
K YTPFPPP QPSKID LESGEYFL R K+ + +K KQAE
Sbjct: 257 APVPAKKQKPKPKTYTPFPPPQQPSKIDLQLESGEYFLKPRAKKQAEEAKKLAKQAEHKE 316
Query: 303 ENKRKRDAAFIPPEEPS---RQNSCEAE 327
+ R AF+PP E + R+ E E
Sbjct: 317 RREADRAKAFVPPTEDAGGKRKRDAEGE 344
>gi|349576691|dbj|GAA21861.1| K7_Krr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 314
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
FI PEE
Sbjct: 303 FIAPEE 308
>gi|260941444|ref|XP_002614888.1| hypothetical protein CLUG_04903 [Clavispora lusitaniae ATCC 42720]
gi|238851311|gb|EEQ40775.1| hypothetical protein CLUG_04903 [Clavispora lusitaniae ATCC 42720]
Length = 373
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/309 (61%), Positives = 239/309 (77%), Gaps = 5/309 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID WKVE+F P N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWD-TPDIDKWKVEEFKPEDNASGQPFAEESSFMTLFPKYRETYLRSIWSEVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++C+L+LVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDSHHIACQLDLVEGSMTVKTTRKTFDPAMILKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERF KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KGLK+V
Sbjct: 124 DVIKIGNFVSNKERFTKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKE 253
RR+VEDCM+N +HP+Y+IK LM+K+EL K+P LA+E+W RFLP FKKKNV ++K K+
Sbjct: 184 RRVVEDCMKN-VHPIYYIKELMIKQELAKNPELAHEDWSRFLPMFKKKNVARKKTAIEKK 242
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KK YTPFPP P K+D +ESGEYFL +R+K K+ QEK+ KQAE T + K +R+ AF
Sbjct: 243 KKVYTPFPPAQTPRKVDLQIESGEYFLGKREKHLKELQEKRAKQAEVTEQRKEERNQAFE 302
Query: 314 PPEEPSRQN 322
PEE + +N
Sbjct: 303 APEEEAYEN 311
>gi|392300798|gb|EIW11888.1| Krr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 316
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
F+ PEE
Sbjct: 303 FVAPEE 308
>gi|254584874|ref|XP_002498005.1| 90S preribosome/SSU processome component KRR1 [Zygosaccharomyces
rouxii CBS 732]
gi|186928977|emb|CAQ43302.1| Ribosomal RNA assembly protein KRR1 [Zygosaccharomyces rouxii]
gi|238940898|emb|CAR29072.1| ZYRO0F18458p [Zygosaccharomyces rouxii]
Length = 314
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/305 (62%), Positives = 235/305 (77%), Gaps = 6/305 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD ID W ++F N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWDTG-EIDKWHQDEFKEEDNASGLPFAEESSFMTLFPKYREAYLKSIWNDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L +Y V+C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL+D C
Sbjct: 64 LNKYHVACVLDLVEGSMTVKTTRKTCDPAIILKARDLIKLLARSVPFPQAVKILEDNTAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERF KRRQ LVGPN +TLKALE+LT CYILVQGNTVAAMG++KGLK+V
Sbjct: 124 DVIKIGNTVANKERFQKRRQRLVGPNGNTLKALELLTKCYILVQGNTVAAMGNYKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK--SK 252
RR+VED M+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K
Sbjct: 184 RRVVEDTMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPNFKKRNVARKKPMKIRK 242
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
EKK YTPFPP P K+D +ESGEYFL++R+KE+KK +E++EKQAEK E +++R F
Sbjct: 243 EKKVYTPFPPAQTPRKVDLEIESGEYFLNKREKEAKKLEERREKQAEKQEERQKERRKDF 302
Query: 313 IPPEE 317
+PP+E
Sbjct: 303 LPPKE 307
>gi|149247984|ref|XP_001528379.1| ribosomal RNA assembly protein mis3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448333|gb|EDK42721.1| ribosomal RNA assembly protein mis3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 363
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/311 (59%), Positives = 236/311 (75%), Gaps = 7/311 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+ KPWD P+ID W +E+F N G E S F TLFP+YRE+YL+ W V A
Sbjct: 5 HNADKPWDT-PDIDKWAIEEFKEEHNASGEHFAEESLFMTLFPKYREQYLRNIWSYVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+K+L D++ C
Sbjct: 64 LDKHHIRCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKVLQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-- 252
RR+VEDCM+N +HP+Y+IK LM+K+EL K+P LANE+W RFLP FKK+NV +KK SK
Sbjct: 184 RRVVEDCMKN-IHPIYYIKELMIKQELSKNPELANEDWSRFLPSFKKRNVARKKKTSKKD 242
Query: 253 -EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP QP KID +ESGEYFL ++++E KK QEK+ KQ E + +++R
Sbjct: 243 GEKKVYTPFPPAQQPRKIDLQIESGEYFLGKKERELKKIQEKRSKQEENSELKRQERAKD 302
Query: 312 FIPPEEPSRQN 322
++ PEE +N
Sbjct: 303 YVAPEESEYEN 313
>gi|389628494|ref|XP_003711900.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae 70-15]
gi|351644232|gb|EHA52093.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae 70-15]
gi|440470939|gb|ELQ39978.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae Y34]
gi|440488292|gb|ELQ68023.1| ribosomal RNA assembly protein KRR1 [Magnaporthe oryzae P131]
Length = 320
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/311 (61%), Positives = 237/311 (76%), Gaps = 7/311 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD + +ID WKV+ F P N GG E SSF TLFP+YRE YL+++WP+V AL
Sbjct: 5 HNVDKPWDTE-DIDKWKVDPFTPSDNAGGTFAEESSFMTLFPKYREVYLRQSWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++YG++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 EKYGIATTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERF+KRRQ ++GPN STLKALE+LT YILV GNTV+AMG +KGLK+VR
Sbjct: 124 IIKIRNLVRNKERFIKRRQRILGPNGSTLKALELLTSTYILVHGNTVSAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+Y IK LMVK+EL KDPALANE+WDRFLP FKK+++ + KV
Sbjct: 184 RVVEDCMNN-VHPIYLIKELMVKRELAKDPALANESWDRFLPNFKKRSLSHRRVPHKVND 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YT FPP P+ SK+D +ESGEYFL + K+ E+QE+ K E KR+R+
Sbjct: 243 KSKKTYTAFPPAPEKSKVDLQIESGEYFLGKEAKKRAAETERQEQAKVKKEERKREREKD 302
Query: 312 FIPPEEPSRQN 322
F+PPEEP Q
Sbjct: 303 FVPPEEPGTQT 313
>gi|409050127|gb|EKM59604.1| hypothetical protein PHACADRAFT_191975 [Phanerochaete carnosa
HHB-10118-sp]
Length = 390
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/351 (54%), Positives = 250/351 (71%), Gaps = 37/351 (10%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDH------WKVEKFDPFWNEGGML-EVSSFS 53
M E E V K+K +H K KPWD D +IDH W+++ F P N+GG E SSF+
Sbjct: 1 MAEAEEALVVNKNK-RHRKDKPWDTD-DIDHVSLWSAWQLDPFKPEDNKGGTFTEESSFA 58
Query: 54 TLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIR 113
TLFP+YRE+YL+E W V AL+ +G++C L+L+ GSM+V TTR+T DPYII+KARD+I+
Sbjct: 59 TLFPKYRERYLREVWSAVTKALETHGIACTLDLIHGSMSVRTTRRTYDPYIILKARDMIK 118
Query: 114 LLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC 173
LL+R V QA+KILDD + CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT C
Sbjct: 119 LLARGVNIGQAVKILDDAIACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQC 178
Query: 174 YILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWD 233
Y+LVQG+TV+ MG +KGLK+VRRIV DCM+N +HP+Y IK LM+K+EL KDPALA E+WD
Sbjct: 179 YVLVQGSTVSVMGPYKGLKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPALATESWD 237
Query: 234 RFLPKFKKKNVK--QKKVKSKE-------------------------KKPYTPFPPPPQP 266
RFLP+F+KK++K +K K E KK YTPFPPP QP
Sbjct: 238 RFLPQFRKKHLKTSEKTAKKNEKLAEKNTARETAGLPPIKLTKEEKRKKVYTPFPPPQQP 297
Query: 267 SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
K+D LESGEYFL ++KE+++ + ++EKQ E TAE + KR AF+ P E
Sbjct: 298 RKVDVQLESGEYFLKSKEKEAREARRRKEKQEEVTAEKQAKRAEAFVAPAE 348
>gi|256270959|gb|EEU06085.1| Krr1p [Saccharomyces cerevisiae JAY291]
Length = 316
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 236/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEA 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
FI PEE
Sbjct: 303 FIAPEE 308
>gi|348690682|gb|EGZ30496.1| hypothetical protein PHYSODRAFT_477367 [Phytophthora sojae]
Length = 396
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/315 (59%), Positives = 240/315 (76%), Gaps = 13/315 (4%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVE----KFDPFWNEG------GMLEVSSFSTLFPQYREKY 63
K H K KPWD + +IDHWK++ + D N G +LE SSF+TLFP+YREKY
Sbjct: 21 KKNHRKDKPWDSE-DIDHWKIDPWQDEIDDNKNAGKKIKMPNLLEESSFATLFPKYREKY 79
Query: 64 LQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123
L+E WP+V AL + +SCELNLVEGSMTV TTRKT DPYI++KARDLI+LL+RS+P Q
Sbjct: 80 LREVWPIVTKALDAHKISCELNLVEGSMTVRTTRKTTDPYIVLKARDLIKLLARSIPVNQ 139
Query: 124 AIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVA 183
A+KILDD++QCDIIKIG LVRNKERFVKRRQ LVGP+ +TLKA+E+LT CY+LVQGNTV+
Sbjct: 140 AVKILDDDVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVS 199
Query: 184 AMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKN 243
AMGS+ GL+ VR+IVEDC N +HP+Y++K LM+K+EL KDP L +ENW+RFLP FKK+N
Sbjct: 200 AMGSYHGLRNVRKIVEDCFAN-IHPIYNVKRLMIKRELAKDPKLKDENWERFLPNFKKQN 258
Query: 244 VKQKKVKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 302
V+ KK K +K YTPFPP P SK+DK +ESGEYF+ E ++++ K Q+K E++
Sbjct: 259 VQTKKPKKVREKKEYTPFPPAPTASKVDKEIESGEYFMKEHERKAMKKQKKHEEKLRVLQ 318
Query: 303 ENKRKRDAAFIPPEE 317
+ K + A ++ P E
Sbjct: 319 KRKADKMAEYVAPSE 333
>gi|301119295|ref|XP_002907375.1| ribosomal RNA assembly protein mis3 [Phytophthora infestans T30-4]
gi|262105887|gb|EEY63939.1| ribosomal RNA assembly protein mis3 [Phytophthora infestans T30-4]
Length = 395
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/375 (53%), Positives = 269/375 (71%), Gaps = 29/375 (7%)
Query: 11 KKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNE-------------GGMLEVSSFSTLFP 57
++ K H K KPWD D +IDHWK+ DP+ +E G+LE SSF+TLFP
Sbjct: 18 REEKKNHRKDKPWDSD-DIDHWKI---DPWQDELEDEKDTGKKIKMPGLLEESSFATLFP 73
Query: 58 QYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117
+YREKYL+E WP+V AL + +SCELNLVEGSMTV TTRKT DPYI++KARDLI+LL+R
Sbjct: 74 KYREKYLREVWPIVTKALDAHKISCELNLVEGSMTVRTTRKTTDPYIVLKARDLIKLLAR 133
Query: 118 SVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
S+P QA+KILDD++QCDIIKIG LVRNKERFVKRRQ LVGP+ +TLKA+E+LT CY+LV
Sbjct: 134 SIPVNQAVKILDDDVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLV 193
Query: 178 QGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 237
QGNTV+AMGS+ GL+ +R+IVEDC N +HP+Y++K LM+K+EL KDP L +ENW+RFLP
Sbjct: 194 QGNTVSAMGSYHGLRNLRKIVEDCFAN-VHPIYNVKRLMIKRELAKDPKLKDENWERFLP 252
Query: 238 KFKKKNVK-QKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEK 296
FKK+NV+ +K K +EKK YTPFPP P SK+DK +ESGEYF+ E ++++ K +K E
Sbjct: 253 TFKKQNVQTKKPKKVREKKDYTPFPPAPTASKVDKEIESGEYFMKEHERKAMKKAKKHED 312
Query: 297 QAEKTAENKRKRDAAFIPPEEPS-----RQNSCEAEDKTNDVAAMAKSLKEK--AKKLRK 349
+ + + K + A + P E ++ EA+++ N A ++LK+K +K
Sbjct: 313 KLQVLQKRKADKMAEYAAPSEKETSKKRKKQKAEAQEE-NKRATSVEALKQKFLNQKTSD 371
Query: 350 QKFAENINPEEYIAA 364
K A ++N +Y+A
Sbjct: 372 SKTAASVN--DYLAV 384
>gi|320163346|gb|EFW40245.1| ribosomal RNA assembly protein mis3 [Capsaspora owczarzaki ATCC
30864]
Length = 363
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/313 (64%), Positives = 251/313 (80%), Gaps = 4/313 (1%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQE 66
T K K + K KPWD D IDHWK+E F N+GG +LE SSF+TLFP+YREKYL+E
Sbjct: 12 TGETKVKRNYRKDKPWDND-TIDHWKIETFTNEDNKGGSLLEESSFATLFPKYREKYLKE 70
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP V AL + G++CEL+L+EGSMTV TT+KT DP+II+KARDLI+LL+RSVP QA+K
Sbjct: 71 VWPHVTKALDDVGIACELDLIEGSMTVRTTKKTFDPFIILKARDLIKLLARSVPLAQALK 130
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL+D++ CDIIKIGN+VRNKERFVKRRQ L+GPN +TLKA+E+LT CY++VQGNTVAAMG
Sbjct: 131 ILEDDVVCDIIKIGNIVRNKERFVKRRQRLLGPNGATLKAIELLTDCYVMVQGNTVAAMG 190
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
+KGLK+VRRIVEDC+ N +HP+Y+IK LM+K+EL KDPALA E+WDRFLP+FKKKNVKQ
Sbjct: 191 GYKGLKEVRRIVEDCLHN-VHPIYNIKTLMIKRELAKDPALATESWDRFLPQFKKKNVKQ 249
Query: 247 KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 306
KK K +K+ TPFPP PQPSKID LESGEYFL E + ++ QE++E+QAE +
Sbjct: 250 KKPKITKKE-KTPFPPLPQPSKIDLQLESGEYFLKEDDRRAQLRQEREERQAEAAEAKRS 308
Query: 307 KRDAAFIPPEEPS 319
+R+ AF P EP+
Sbjct: 309 QREKAFEAPAEPA 321
>gi|156847828|ref|XP_001646797.1| hypothetical protein Kpol_2002p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156117478|gb|EDO18939.1| hypothetical protein Kpol_2002p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 338
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/323 (58%), Positives = 244/323 (75%), Gaps = 6/323 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD + +ID WKVE+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWDTE-DIDKWKVEEFKPEDNASGLPFAEESSFMTLFPKYREIYLKSVWNDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++C L+LVEGSMTV TTRKT DPY I+KARDLI+LL+RSVP PQAIKIL+D+M C
Sbjct: 64 LDKRHIACTLDLVEGSMTVKTTRKTFDPYAILKARDLIKLLARSVPFPQAIKILEDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG FKGLK++
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSCMGPFKGLKEI 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM+N +HP+YHIK LM+K+EL K P LA+E+W RFLP FKK+NV +KK +K
Sbjct: 184 RRVVEDCMKN-VHPIYHIKELMIKRELAKRPELADEDWSRFLPMFKKRNVARKKAAKPKK 242
Query: 255 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+ YTPFPP QP K+D +ESGEYFLS+++KE K+ QE++E+Q++K E +++R +
Sbjct: 243 EKKVYTPFPPAQQPRKVDLEIESGEYFLSKKEKEVKRLQERREEQSQKQIEKEKERSKDY 302
Query: 313 IPPEEPSRQNSCEAEDKTNDVAA 335
+ P E +++ K ++
Sbjct: 303 VAPMEEEYKSTITKSSKKRSIST 325
>gi|390600873|gb|EIN10267.1| ribosomal RNA assembly protein mis3 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 386
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/330 (56%), Positives = 236/330 (71%), Gaps = 30/330 (9%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGA 74
+H K KPWD D +IDHWK++ F P N+GG E SSF+TLFP+YREKYLQE W V A
Sbjct: 16 RHRKDKPWDTD-DIDHWKIDPFTPEDNKGGTFTEESSFATLFPKYREKYLQEVWSAVTAA 74
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L +G++C L+L+ GSM+V TTRKT DPYII+KARD+I+LL+R V QA+KIL D+M C
Sbjct: 75 LDSHGIACTLDLIHGSMSVKTTRKTYDPYIILKARDMIKLLARGVAVGQAVKILQDDMAC 134
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
DIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +K LK+V
Sbjct: 135 DIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTRCYVLVQGSTVSVMGPYKSLKEV 194
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV----- 249
RRIV DCM+N +HP+Y IK LM+K+EL KDP LA E WDRFLP+F++K++K +
Sbjct: 195 RRIVLDCMKN-IHPIYRIKELMIKRELAKDPKLATEPWDRFLPQFRRKHLKTSEKTARKN 253
Query: 250 ----------------------KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKES 287
K K KK YTPFPP P K+D LESGEYFL +KE+
Sbjct: 254 AAVEAKKEARAAAGLDPEEMAKKDKAKKVYTPFPPAQLPRKVDLQLESGEYFLKPHEKEA 313
Query: 288 KKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
K+ + ++EKQAE TA+ + +R AF+ P E
Sbjct: 314 KEAKRRKEKQAEVTAKRRAERQEAFVAPAE 343
>gi|365761869|gb|EHN03495.1| Krr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840079|gb|EJT43000.1| KRR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 316
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/312 (62%), Positives = 238/312 (76%), Gaps = 7/312 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNREKPWDTD-DIDKWKIEEFKEEDNGSGQPFAEESSFMTLFPKYREGYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKRDKQVKKLNEQKEKQMERELERQEERAKD 302
Query: 312 FIPPEEPSRQNS 323
F PEE S + S
Sbjct: 303 FTAPEEESYKPS 314
>gi|299747151|ref|XP_001841248.2| 90S preribosome/SSU processome component KRR1 [Coprinopsis cinerea
okayama7#130]
gi|298407390|gb|EAU80543.2| ribosomal RNA assembly protein mis3 [Coprinopsis cinerea
okayama7#130]
Length = 392
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/368 (51%), Positives = 249/368 (67%), Gaps = 30/368 (8%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQY 59
M E E K H K KPWD D +IDHWK+E F P N+GG E SSF+TLFP+Y
Sbjct: 1 MAETTEAPKEKGKNKAHRKDKPWDTD-DIDHWKIEPFKPEDNKGGTFAEESSFATLFPKY 59
Query: 60 REKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 119
REKYL+E W V AL+ +GV+C L+LV GSM+V TTRKT DPYII+KARD+I+L++R V
Sbjct: 60 REKYLREVWSAVTKALEVHGVACTLDLVHGSMSVRTTRKTYDPYIILKARDMIKLMARGV 119
Query: 120 PAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG 179
QA+KIL D+M CDIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG
Sbjct: 120 ALNQAVKILQDDMACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTNCYVLVQG 179
Query: 180 NTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF 239
+TV+ MG FK LK+VRRIV DCM+N +HP+Y IK LM+++EL KDP LA E+WDRFLP+F
Sbjct: 180 STVSVMGPFKSLKEVRRIVLDCMKN-IHPIYRIKELMIRRELAKDPKLATESWDRFLPQF 238
Query: 240 KKKNVKQKKVKS---------------------------KEKKPYTPFPPPPQPSKIDKL 272
+K+++K + + K+KK YTPFPPP P K+D
Sbjct: 239 RKRHLKTSEKTAKKNEKLKEKEEARKAAGLDPAEASKTEKKKKVYTPFPPPQLPRKVDLQ 298
Query: 273 LESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTND 332
LESGEYFL +K +K+ +++++KQ E T + K +R AF+ P E + E + +
Sbjct: 299 LESGEYFLKASEKAAKEAEKRKQKQMEVTEQRKAERAEAFVAPAEQAAPTVEEKKKRKRA 358
Query: 333 VAAMAKSL 340
A M K +
Sbjct: 359 AAEMEKEM 366
>gi|310792085|gb|EFQ27612.1| ribosomal RNA assembly protein KRR1 [Glomerella graminicola M1.001]
Length = 324
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/306 (61%), Positives = 236/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK++ F P N GG E SSF+ +FP+YRE YL+EAWP+V AL
Sbjct: 5 YKKEKPWDTD-DIDKWKIDAFTPADNAGGTFAEESSFAIVFPKYREVYLKEAWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKTGIACSLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKER+VKRRQ ++GPN STLKALE+LT YILVQG+TV+ MG FKGLK+VR
Sbjct: 124 IIKIRNLVRNKERYVKRRQRILGPNGSTLKALELLTQTYILVQGSTVSVMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKKK + Q+ KV
Sbjct: 184 RVVEDCMAN-IHPIYHIKELMIKRELAKDPELANESWDRFLPNFKKKTLSQRRVPLKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +E+GEYFL + K E+ E+Q +K E R+R+
Sbjct: 243 KSKKVYTPFPPAPEKSKVDKQIETGEYFLGKEAKAKAAQAERMEQQKQKKEERLREREKE 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|50304523|ref|XP_452216.1| 90S preribosome/SSU processome component KRR1 [Kluyveromyces lactis
NRRL Y-1140]
gi|49641349|emb|CAH01067.1| KLLA0C00506p [Kluyveromyces lactis]
Length = 330
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/304 (62%), Positives = 237/304 (77%), Gaps = 5/304 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD D +D W +E+F P N+ G+ E SSF TLFP+YRE YL+ W V +
Sbjct: 5 HNKDKPWDTD-EVDKWNIEEFKPEDNKSGLPFAEESSFMTLFPKYREAYLKSVWKDVTRS 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++CELNLVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL+D++ C
Sbjct: 64 LDAHHIACELNLVEGSMTVKTTRKTYDPAVILKARDLIKLLARSVPFPQAVKILEDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG +KGLK+V
Sbjct: 124 DVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKE 253
RR+VEDCM+N +HP+YHIK LM+K+EL K P LA E+W RFLP FKK+NV ++K K KE
Sbjct: 184 RRVVEDCMKN-VHPIYHIKELMIKRELAKKPELAEEDWSRFLPMFKKRNVARKKPKKIKE 242
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KK YTPFPP P K+D +ESGEYFLS+R+KE KK E++E+QA K AE + +R FI
Sbjct: 243 KKIYTPFPPAQLPRKVDLEIESGEYFLSKREKEVKKLHERREQQAAKHAEKESERAKDFI 302
Query: 314 PPEE 317
P+E
Sbjct: 303 APKE 306
>gi|254565757|ref|XP_002489989.1| 90S preribosome/SSU processome component KRR1 [Komagataella
pastoris GS115]
gi|238029785|emb|CAY67708.1| Essential nucleolar protein required for the synthesis of 18S rRNA
[Komagataella pastoris GS115]
gi|328350400|emb|CCA36800.1| Ribosomal RNA assembly protein KRR1 [Komagataella pastoris CBS
7435]
Length = 314
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/309 (60%), Positives = 239/309 (77%), Gaps = 5/309 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD P++D W+ ++F N G E SSF TLFP+YRE+YL++AW V A
Sbjct: 4 HEKDKPWDT-PDVDKWRQDEFKEEDNVSGQPFAEESSFVTLFPKYREQYLKQAWGDVAKA 62
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + + CELNLVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 63 LNAHHIGCELNLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPLPQAVKILQDDISC 122
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIG + NKERF KRRQ LVGPN +TLKALE+LTGCYILVQGNTV+ MG FKGLK+V
Sbjct: 123 DVIKIGGNLDNKERFTKRRQRLVGPNGNTLKALELLTGCYILVQGNTVSVMGPFKGLKEV 182
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKE 253
RR+VEDCM+N +HP+YHIK LM+K+EL K P L NE+W RFLP F+K+NV ++ K+ KE
Sbjct: 183 RRVVEDCMKN-VHPIYHIKELMIKRELAKKPELVNEDWSRFLPMFRKRNVARKNKISKKE 241
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KKPYTPFPP +P K+D +ESGEYFL +R K++K+ QEK++KQ E T + + R+ ++
Sbjct: 242 KKPYTPFPPQQKPRKVDLQIESGEYFLGDRAKKAKELQEKRDKQQEVTDKKRDDRNKGYV 301
Query: 314 PPEEPSRQN 322
PEE R+N
Sbjct: 302 APEEEHRKN 310
>gi|46123651|ref|XP_386379.1| hypothetical protein FG06203.1 [Gibberella zeae PH-1]
Length = 426
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/306 (59%), Positives = 234/306 (76%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD + +ID W++E F P N GG E SSF+TLFP+YRE YL+E WP++ AL
Sbjct: 111 HNVAKPWDTE-DIDKWRIEPFLPKDNVGGPFTEESSFATLFPKYRESYLKEVWPLITRAL 169
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+L+EGSM V T+ +T DP I+KARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 170 EKLGIACSLDLIEGSMVVKTSLRTHDPSSILKARDLIKLLARSVPAPQAIKILEDGIACD 229
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI N V +KERFVKRRQ L+GPN +TLKALE+LT YILV GNTV+ MG +KGLK++R
Sbjct: 230 IIKIRNQVASKERFVKRRQRLLGPNGTTLKALELLTKTYILVHGNTVSVMGPYKGLKEIR 289
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK M+K+EL KDP LANE+WDRFLP FK+K + Q+ KV
Sbjct: 290 RVVEDCMAN-IHPIYHIKEAMIKQELAKDPELANESWDRFLPNFKRKTLSQRRVPHKVND 348
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +ESGEYFL + KE +E++EKQ ++ E ++R+A
Sbjct: 349 KAKKVYTPFPPAPEKSKVDKQIESGEYFLGKVGKERAAQEERREKQNKRKEEKAKEREAD 408
Query: 312 FIPPEE 317
FI PEE
Sbjct: 409 FIAPEE 414
>gi|225559135|gb|EEH07418.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus G186AR]
Length = 352
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/306 (62%), Positives = 241/306 (78%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WPM+ AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEHNAGGTFTEESSFVSLFPKYREAYLKETWPMITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL D++ CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVPAPQALKILQDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT YILVQGNTV+AMG +KGLK++R
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYILVQGNTVSAMGPYKGLKEIR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K++ +
Sbjct: 243 KSKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERAKKEEIIERQKEKREEKKKELEKD 302
Query: 312 FIPPEE 317
F+PP+E
Sbjct: 303 FVPPKE 308
>gi|344233678|gb|EGV65550.1| eukaryotic type KH-domain (KH-domain type I) [Candida tenuis ATCC
10573]
gi|344233679|gb|EGV65551.1| hypothetical protein CANTEDRAFT_113171 [Candida tenuis ATCC 10573]
Length = 338
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/308 (59%), Positives = 235/308 (76%), Gaps = 4/308 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W ++F P N G E S+F TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWD-TPDIDKWHQDEFQPEHNASGQPFTEESNFMTLFPKYREQYLRSIWNDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C+L+LVEGSMTV TT KT DP II+KARDLI+LL+RSVP PQA+K+L D+ C
Sbjct: 64 LDKHHIACQLDLVEGSMTVRTTGKTFDPAIILKARDLIKLLARSVPFPQAVKVLQDDTAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
++IKIGN+V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG + GLK V
Sbjct: 124 EVIKIGNVVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYSGLKTV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLPKFKK+NV++KK +EK
Sbjct: 184 RRVVEDCMKN-VHPIYHIKELMIKQELSKKPELANEDWSRFLPKFKKQNVQRKKAPKREK 242
Query: 255 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 314
K YTPFPP QP KID +ESGEYFL + +K+ K+ EK+EKQ E + +++R +
Sbjct: 243 KVYTPFPPQQQPRKIDMQIESGEYFLRKSEKKQKQMDEKKEKQEEALSAKQQQRQQDYEA 302
Query: 315 PEEPSRQN 322
PEE S +N
Sbjct: 303 PEEESYEN 310
>gi|342883805|gb|EGU84227.1| hypothetical protein FOXB_05184 [Fusarium oxysporum Fo5176]
Length = 320
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/306 (60%), Positives = 241/306 (78%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H++PKPWD ++D WK++ F P N GG LE SSFS LFP+YRE YL+EAWP+V AL
Sbjct: 5 HERPKPWDTG-DVDKWKIDAFTPKDNVGGTFLEESSFSLLFPKYREVYLKEAWPLVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSM V TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 EKHGIACTLDLVEGSMAVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI L +KE FVKRRQ ++GPN STLKALE+LT YILV GNTV+AMG +KGLK++R
Sbjct: 124 VIKIRGLCGSKESFVKRRQRILGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKELR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCMQN +HP+YHIK +M+K+EL KDP LANE+WDRFLP FKK+++ + KV
Sbjct: 184 RVVEDCMQN-VHPIYHIKEMMIKRELAKDPELANESWDRFLPNFKKRSLSHRRVPHKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +E+GEYFL++ K+ +E++EKQ+++ E ++R+A
Sbjct: 243 KTKKTYTPFPPAPEKSKVDKQIETGEYFLAKGDKKRALHEERKEKQSKRKEEKAKEREAE 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|240282060|gb|EER45563.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus H143]
gi|325088198|gb|EGC41508.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus H88]
Length = 351
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/306 (62%), Positives = 241/306 (78%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WPM+ AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFRPEHNAGGTFTEQSSFVSLFPKYREAYLKEIWPMITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL D++ CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVPAPQALKILQDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT YILVQGNTV+AMG +KGLK++R
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTNTYILVQGNTVSAMGPYKGLKEIR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K++ +
Sbjct: 243 KRKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERAKKEEIIERQKEKREEKKKELEKD 302
Query: 312 FIPPEE 317
F+PP+E
Sbjct: 303 FVPPKE 308
>gi|392568645|gb|EIW61819.1| hypothetical protein TRAVEDRAFT_143946 [Trametes versicolor
FP-101664 SS1]
Length = 393
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/332 (55%), Positives = 241/332 (72%), Gaps = 32/332 (9%)
Query: 16 KHDKPKPWDEDPNIDH-WKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+H K KPWD D +IDH WK+++F P N+ G E SSF+TLFP+YREKYL+E W V
Sbjct: 17 RHRKEKPWDTD-DIDHSWKIDQFKPEDNKAGPFTEESSFATLFPKYREKYLREVWSAVTQ 75
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL +G+SC L+L+ GSM+V TTRKT DPYII+KARD+I+LL+R V QA+KI+ D++
Sbjct: 76 ALDTHGISCTLDLIHGSMSVRTTRKTYDPYIILKARDMIKLLARGVAIGQAVKIMSDDIA 135
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKIGN+VRNKERF+KRRQ ++GP+ STLKA+E+LT CY+LVQGNTV+ MG +KGLK+
Sbjct: 136 CDIIKIGNVVRNKERFIKRRQRIIGPDGSTLKAIELLTQCYVLVQGNTVSVMGPYKGLKE 195
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKS 251
VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLPKF+K+++K +K K
Sbjct: 196 VRRIVLDCMKN-IHPIYRIKELMIKRELAKDPQLATESWDRFLPKFRKRHLKTSEKTAKK 254
Query: 252 KEK--------------------------KPYTPFPPPPQPSKIDKLLESGEYFLSERKK 285
E+ K YTPFPPP QP K+D LESGEYFL +K
Sbjct: 255 NERIQEKDESRKAAGLPTVEEAKKEKKEKKVYTPFPPPQQPRKVDLQLESGEYFLKAHEK 314
Query: 286 ESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
E+++ ++++EKQ E TAE + KR F+ PEE
Sbjct: 315 EARENRKRKEKQEEVTAERRAKRAEVFVAPEE 346
>gi|255715898|ref|XP_002554230.1| 90S preribosome/SSU processome component KRR1 [Lachancea
thermotolerans CBS 6340]
gi|238935613|emb|CAR23793.1| KLTH0F00506p [Lachancea thermotolerans CBS 6340]
Length = 332
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/312 (61%), Positives = 240/312 (76%), Gaps = 7/312 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD P+ID WK+E+F P N GM E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWDT-PDIDKWKIEEFKPEDNVSGMPFAEESSFMTLFPKYREAYLKSVWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTR+T DP II+KARDLI+LL+RSVP PQA+KIL D+ C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRRTYDPAIILKARDLIKLLARSVPFPQAVKILQDDTAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK---VKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LA E+W RFLP FKK+NV +KK +K
Sbjct: 184 RRVVEDCMRN-IHPIYHIKELMIKRELAKRPDLAEEDWSRFLPMFKKRNVARKKPKNIKP 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
KE K YTPFPP QP KID +ESGEYFL++++KE+KK +E++ +QAEK E ++R
Sbjct: 243 KENKVYTPFPPAQQPRKIDLQIESGEYFLTKKEKEAKKLEERKREQAEKQVEKNKERAKD 302
Query: 312 FIPPEEPSRQNS 323
++ P E + S
Sbjct: 303 YVAPIEKGYEGS 314
>gi|50285113|ref|XP_444985.1| 90S preribosome/SSU processome component KRR1 [Candida glabrata CBS
138]
gi|49524288|emb|CAG57885.1| unnamed protein product [Candida glabrata]
Length = 337
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/312 (60%), Positives = 239/312 (76%), Gaps = 8/312 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
++K KPWD + +ID WK+E+F P N+ G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 YNKDKPWDTE-DIDKWKIEEFKPEDNKSGQPFAEESSFMTLFPKYREAYLKSIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHHIGCTLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KGLK++
Sbjct: 124 DVIKIGNTVANKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEI 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK---KVKS 251
RR+V DCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +K KVK+
Sbjct: 184 RRVVLDCMKN-VHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPSKVKA 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+++KE KK E++EKQAEK +R
Sbjct: 243 -EKKVYTPFPPAQLPRKVDLQIESGEYFLSKKEKEIKKLHEQREKQAEKQILKDEERRKD 301
Query: 312 FIPPEEPSRQNS 323
+I P+E ++S
Sbjct: 302 YIAPKEDEYKSS 313
>gi|239614293|gb|EEQ91280.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis ER-3]
gi|327356334|gb|EGE85191.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis ATCC
18188]
Length = 352
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/306 (61%), Positives = 241/306 (78%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WPM+ AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEHNAGGTFTEESSFVSLFPKYREAYLKETWPMITRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQA++IL+D++ CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQALQILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+L+ YILVQGNTV+ MG +KGLK++R
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLSNTYILVQGNTVSVMGPYKGLKEIR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K++ +
Sbjct: 243 KSKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERSKKEEMVERQREKREEKKKELEKD 302
Query: 312 FIPPEE 317
F+PP+E
Sbjct: 303 FVPPKE 308
>gi|401626633|gb|EJS44561.1| krr1p [Saccharomyces arboricola H-6]
Length = 316
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/306 (62%), Positives = 236/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD + +ID W++E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTN-DIDKWRIEEFKEEDNASGQPFAEESSFMTLFPKYREGYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ +VGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRMVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-VHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
F PEE
Sbjct: 303 FTAPEE 308
>gi|451848013|gb|EMD61319.1| hypothetical protein COCSADRAFT_201760 [Cochliobolus sativus
ND90Pr]
Length = 344
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/304 (60%), Positives = 232/304 (76%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD D +ID WK+E F P N+ G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HNVDKPWDTD-DIDKWKIEPFKPEDNKAGAFTDESRFSTLFPKYREQYLKGSWKFITQAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQAIKIL+D++ D
Sbjct: 64 QRLGIGCELNLVEGSMTVWTTKKTYDPAAILNARDLIKLLARSVPAPQAIKILEDDVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTVA MG +KGLKQVR
Sbjct: 124 IIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVACMGPYKGLKQVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI+ED M N +HP+Y IK LM+KKEL KDP LANE+WDRFLP FKK+++ ++ KV
Sbjct: 184 RIIEDTMHN-IHPIYAIKELMIKKELAKDPELANESWDRFLPNFKKRSLSKRRIPHKVND 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KKPYTPFPPP + SK+D +ESGEYFL + KE K +E++EK +K +++R A
Sbjct: 243 KSKKPYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKVQEEREEKMKDKMDAKRKERMAE 302
Query: 312 FIPP 315
++ P
Sbjct: 303 YVAP 306
>gi|169774963|ref|XP_001821949.1| 90S preribosome/SSU processome component KRR1 [Aspergillus oryzae
RIB40]
gi|83769812|dbj|BAE59947.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 359
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/304 (60%), Positives = 232/304 (76%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E F N G E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEPFKSEDNVAGSFAEESSFATLFPKYREVYLKEAWPLVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVP QA+KIL+D + CD
Sbjct: 64 EKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI + VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+AMG +KGLK+VR
Sbjct: 124 IIKIRSQVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
++V DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 KVVNDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ K+ + +E EKQ K E ++R A
Sbjct: 243 KSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRAQKEELMEKQRVKREEKMKERAKA 302
Query: 312 FIPP 315
F+PP
Sbjct: 303 FVPP 306
>gi|238496401|ref|XP_002379436.1| 90S preribosome/SSU processome component KRR1 [Aspergillus flavus
NRRL3357]
gi|220694316|gb|EED50660.1| rRNA assembly protein Mis3, putative [Aspergillus flavus NRRL3357]
gi|391868875|gb|EIT78084.1| rRNA processing protein [Aspergillus oryzae 3.042]
Length = 361
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/304 (60%), Positives = 232/304 (76%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ + KPWD D +ID WK+E F N G E SSF+TLFP+YRE YL+EAWP+V AL
Sbjct: 5 YKRDKPWDTD-DIDKWKIEPFKSEDNVAGSFAEESSFATLFPKYREVYLKEAWPLVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+LL+RSVP QA+KIL+D + CD
Sbjct: 64 EKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPVQQALKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI + VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+AMG +KGLK+VR
Sbjct: 124 IIKIRSQVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSAMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
++V DCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 KVVNDCMAN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPNFKKRTLSKRRTPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+D +ESGEYFLS+ K+ + +E EKQ K E ++R A
Sbjct: 243 KSKKVYTPFPPAPEKSKVDLQIESGEYFLSKEAKDRAQKEELMEKQRVKREEKMKERAKA 302
Query: 312 FIPP 315
F+PP
Sbjct: 303 FVPP 306
>gi|298708603|emb|CBJ26090.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 398
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/277 (64%), Positives = 232/277 (83%), Gaps = 2/277 (0%)
Query: 41 WNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTR 100
+ + G+LE SSF+TLFP+YREKYL+E WP+V AL++ GVSCEL+L+EGSMTV TTRKTR
Sbjct: 27 FAQSGLLEESSFATLFPKYREKYLREVWPIVTKALQKRGVSCELDLIEGSMTVRTTRKTR 86
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPN 160
DPY+IVKARDLI+LL+RS+PA QA+++L+D++ CDIIKIG +VRNKERFVKRR LVGP+
Sbjct: 87 DPYVIVKARDLIKLLARSIPAQQALRVLEDDVNCDIIKIGGMVRNKERFVKRRARLVGPD 146
Query: 161 SSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKE 220
STLKALE+LTGCY+LVQGNTV+AMGS++GLKQVR++V DCM N +HPVY+IK LM+++E
Sbjct: 147 GSTLKALELLTGCYVLVQGNTVSAMGSYQGLKQVRKVVTDCMNN-VHPVYNIKTLMIRRE 205
Query: 221 LEKDPALANENWDRFLPKFKKKNVKQKK-VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 279
L KDP L +ENW+RFLP+F KKNVK+KK +EKK YTPFPP P K+D+ LESGE+F
Sbjct: 206 LAKDPNLKDENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFF 265
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 316
L+ER++++KK EK+ K AE +A ++ R+ P E
Sbjct: 266 LNERQRKAKKRAEKKAKSAELSAAKRKNREQDLEPTE 302
>gi|452823541|gb|EME30551.1| ribosomal RNA assembly protein mis3/dribble/Krr1p [Galdieria
sulphuraria]
Length = 350
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/328 (58%), Positives = 252/328 (76%), Gaps = 5/328 (1%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+ K+ K KPWD + +IDHWKVE+F P + LE SSFSTLFPQYRE YL++ WP V
Sbjct: 15 RNKYRKDKPWDSE-DIDHWKVEEFTPEQSSFPFLEESSFSTLFPQYREAYLRQVWPTVTK 73
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
+L Y +SCEL+LV+G+M V TT KT DPYII KARDLI+LL+RSVP QA+KIL D+MQ
Sbjct: 74 SLDTYSISCELDLVKGAMVVRTTAKTWDPYIIFKARDLIKLLARSVPVQQALKILRDDMQ 133
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKI N RNKERFVKRRQ L+G N +TLKA+E+LT CY+LVQG+TVAAMGS+KGLKQ
Sbjct: 134 CDIIKISNFTRNKERFVKRRQRLIGSNGATLKAIELLTQCYVLVQGSTVAAMGSYKGLKQ 193
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK--- 250
VRRIVEDCM+N +HP+Y+IK LM+K+EL KDP L+ E+WDRFLPKFKKKN K+K+
Sbjct: 194 VRRIVEDCMRN-IHPIYNIKTLMIKRELAKDPILSKESWDRFLPKFKKKNPKKKRKVPKN 252
Query: 251 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 310
+K+ + PFPPP P KID +ESGEYFL E++K+ ++ QE+++++ EK E +++++
Sbjct: 253 TKKDESDNPFPPPQMPRKIDLEMESGEYFLHEKQKQLRQRQERKKREEEKQLEKRKQKER 312
Query: 311 AFIPPEEPSRQNSCEAEDKTNDVAAMAK 338
+IPP+E + +S + K +D ++ K
Sbjct: 313 EYIPPKEDNVNDSQVYKRKQSDNDSVRK 340
>gi|336386044|gb|EGO27190.1| hypothetical protein SERLADRAFT_381537 [Serpula lacrymans var.
lacrymans S7.9]
Length = 386
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/344 (52%), Positives = 243/344 (70%), Gaps = 31/344 (9%)
Query: 3 ENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYRE 61
E E VNK + H K KPWD D +ID WK++ F P N+GG+ E SSF+TLFP+YRE
Sbjct: 2 EGEEPVVNKNKR--HRKDKPWDTD-DIDQWKIDAFQPIDNKGGVFTEESSFATLFPKYRE 58
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
KYL+E W V AL +G+ C L+LV GSM+V TTRKT DPY+++KARD+I+LL+R V
Sbjct: 59 KYLREVWSAVTRALDSHGIGCTLDLVHGSMSVKTTRKTYDPYVLLKARDMIKLLARGVAI 118
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNT 181
QA+K+L D++ CDIIKIG+LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+T
Sbjct: 119 SQAVKVLQDDVACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGST 178
Query: 182 VAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK 241
V+ MG +K LK+VRRIV DCM+N +HP+Y IK LM+++EL KDP LA E+WDRFLP+F+K
Sbjct: 179 VSVMGPYKSLKEVRRIVLDCMKN-IHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRK 237
Query: 242 KNVKQ--------------------------KKVKSKEKKPYTPFPPPPQPSKIDKLLES 275
+++K +K KK YTPFPPP P K+D LES
Sbjct: 238 RHLKTSEKTAKKNEKQAVKDEARKAAGLDPAQKTDKTAKKVYTPFPPPQLPRKVDMQLES 297
Query: 276 GEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 319
GEYFL ++E+++ +++++KQAE TA+ +++R FI P E +
Sbjct: 298 GEYFLKPHEREAREIEQRKQKQAETTAKRQKERAEVFIAPVETA 341
>gi|428169969|gb|EKX38898.1| hypothetical protein GUITHDRAFT_158464 [Guillardia theta CCMP2712]
Length = 356
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/353 (55%), Positives = 255/353 (72%), Gaps = 20/353 (5%)
Query: 3 ENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREK 62
E + K V K K + DKP WD + +IDHWK+E F + +LE SSF+TLFP+YRE+
Sbjct: 15 EEVNKEVPKNKKYRRDKP--WDSE-DIDHWKIEPFSQGDMKTALLEESSFATLFPKYREQ 71
Query: 63 YLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122
YL+E WP + L GV+CELNLVEGSMTV TTRKT DPYII+K+RDLI+LL+RSVPA
Sbjct: 72 YLRETWPAITKELDRVGVACELNLVEGSMTVKTTRKTWDPYIILKSRDLIKLLARSVPAQ 131
Query: 123 QAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTV 182
QA+KIL D++QCDIIKI +VRNK+RFVKRRQ L+GPN STLKALE+LT NTV
Sbjct: 132 QALKILQDDVQCDIIKISGMVRNKDRFVKRRQRLLGPNGSTLKALELLTK-------NTV 184
Query: 183 AAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK 242
+ MGSF+G+KQ R+++ DCM N +HP+Y+IK LM+++EL KD L NE+WDRFLPKFKK+
Sbjct: 185 SVMGSFQGIKQARKVIVDCMNN-IHPIYNIKALMIRRELSKDEKLKNESWDRFLPKFKKR 243
Query: 243 NVKQKKVK--SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEK 300
NVK KK K + +KK YTPFPPP QPSK+D LESGE+FL+E +++ K E+ EK +
Sbjct: 244 NVKTKKPKETAAKKKEYTPFPPPQQPSKVDLELESGEFFLNEAQRKEKTKAERAEKNKQI 303
Query: 301 TAENKRKRDAAFIPPEEPSRQNSC----EAEDKTNDVAAM---AKSLKEKAKK 346
+N + + A F+PP+E ++ E+K ND+ A+ +LKEK +K
Sbjct: 304 KEQNDKDKAAVFVPPKEKKKKRKSGEDEGQEEKKNDMKALKEQVANLKEKVRK 356
>gi|330919489|ref|XP_003298637.1| 90S preribosome/SSU processome component KRR1 [Pyrenophora teres f.
teres 0-1]
gi|311328077|gb|EFQ93271.1| hypothetical protein PTT_09405 [Pyrenophora teres f. teres 0-1]
Length = 343
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/306 (60%), Positives = 232/306 (75%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD D +ID WK+E F P N G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HNVDKPWDTD-DIDKWKIEPFKPEDNTAGAFTDESRFSTLFPKYREQYLKGSWKFITQAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILDDE+ D
Sbjct: 64 QKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSVPAPQAVKILDDEVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTVAAMG +KGLKQVR
Sbjct: 124 IIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVAAMGPYKGLKQVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RIVED M N +HP+Y IK LM+KKEL KDP L NE+WDRFLP FKK+++ ++ KV
Sbjct: 184 RIVEDTMHN-IHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVND 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP + SK+D +ESGEYFL + KE K +E+++K +K +R+R
Sbjct: 243 KTKKTYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKVQEEREDKMKDKMDAKRRERMQE 302
Query: 312 FIPPEE 317
++ P+E
Sbjct: 303 YVAPDE 308
>gi|357120775|ref|XP_003562100.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Brachypodium
distachyon]
Length = 349
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/300 (66%), Positives = 238/300 (79%), Gaps = 17/300 (5%)
Query: 21 KPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGV 80
KPWD+DP+I WK+EKFDP WN+GGMLEVSSFST FP+Y EKYLQEAWP V+GAL+++GV
Sbjct: 18 KPWDDDPDIGRWKMEKFDPSWNKGGMLEVSSFSTRFPRYEEKYLQEAWPTVQGALRDFGV 77
Query: 81 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIG 140
+CELNLV+ +TVSTTRKTRDPYII+KARDLI LL+R VPAPQAIKILDDEM CDIIKI
Sbjct: 78 TCELNLVKECITVSTTRKTRDPYIIIKARDLIVLLARGVPAPQAIKILDDEMTCDIIKIR 137
Query: 141 NLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG--SFKGLKQVRRIV 198
N++RN ERFV+RR+ ++GPN ST KA+EILTGCYILVQG TVAAMG + +GLKQVRRIV
Sbjct: 138 NIIRNNERFVRRRRRILGPNLSTRKAIEILTGCYILVQGGTVAAMGPSNGRGLKQVRRIV 197
Query: 199 EDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY- 257
EDCM+N HP+YHIK L++K+E K+ +ANE+WDR +K+KKPY
Sbjct: 198 EDCMKNIKHPMYHIKDLLIKREQAKNATVANESWDR--------------TNAKQKKPYA 243
Query: 258 TPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
P PP PSKID LES EYFLS+ K +K+ QEK KQ+EK NKRKR+AA +PP+E
Sbjct: 244 APSLPPQTPSKIDLELESEEYFLSDENKSAKERQEKLGKQSEKVHGNKRKREAALVPPKE 303
>gi|363747734|ref|XP_003644085.1| hypothetical protein Ecym_1009 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887717|gb|AET37268.1| hypothetical protein Ecym_1009 [Eremothecium cymbalariae
DBVPG#7215]
Length = 336
Score = 369 bits (948), Expect = e-99, Method: Compositional matrix adjust.
Identities = 187/314 (59%), Positives = 242/314 (77%), Gaps = 5/314 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD P+ID WK+E+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWDT-PDIDKWKIEEFKPEDNASGLPFAEESSFMTLFPKYREAYLKSTWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++CELNLVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL+D++ C
Sbjct: 64 LDKHHLACELNLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILEDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KGLK+V
Sbjct: 124 DVIKIGNFSSNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKE 253
RR+VEDCM+N +HP+YHIK LM+K+EL K P LA+++W RFLP FKK+N+ ++K K KE
Sbjct: 184 RRVVEDCMKN-VHPIYHIKELMIKRELAKKPELADQDWSRFLPMFKKRNIARKKPKKIKE 242
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KK YTPFPP P K+D +E+GEYFLS+ +K+ KK +E + +Q EK E ++R +I
Sbjct: 243 KKVYTPFPPAQLPRKVDLEIETGEYFLSKNEKKMKKLEEHRNRQTEKQLEKAKERAEDYI 302
Query: 314 PPEEPSRQNSCEAE 327
P+E +N+ ++
Sbjct: 303 APDEKEYKNALNSQ 316
>gi|261204337|ref|XP_002629382.1| 90S preribosome/SSU processome component KRR1 [Ajellomyces
dermatitidis SLH14081]
gi|239587167|gb|EEQ69810.1| ribosomal RNA assembly protein mis3 [Ajellomyces dermatitidis
SLH14081]
Length = 352
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 186/306 (60%), Positives = 240/306 (78%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK+E+F P N GG E SSF +LFP+YRE YL+E WPM+ AL
Sbjct: 5 YKKDKPWDTD-DIDKWKIEEFKPEHNAGGTFTEESSFVSLFPKYREAYLKETWPMITRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPA QA++IL+D++ CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPALQALQILEDDVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLVRNKERFVKRRQ ++GP+ STLKALE+L+ YILVQGNTV+ MG +KGLK++R
Sbjct: 124 IIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLSNTYILVQGNTVSVMGPYKGLKEIR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK +M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP + SK+D +ESGEYFLS++ +E K +E E+Q EK E K++ +
Sbjct: 243 KSKKVYTPFPPPQEKSKVDLQIESGEYFLSKQARERSKKEEMVERQREKREEKKKELEKD 302
Query: 312 FIPPEE 317
F+PP+E
Sbjct: 303 FVPPKE 308
>gi|321477353|gb|EFX88312.1| hypothetical protein DAPPUDRAFT_305506 [Daphnia pulex]
Length = 343
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 180/322 (55%), Positives = 242/322 (75%), Gaps = 7/322 (2%)
Query: 29 IDHWKVE--KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNL 86
++ WK++ +F N G+LE SSF+TLFP+YRE YL+E WP+VK AL EY + EL++
Sbjct: 17 VNAWKMKLPEFKQEHNPHGLLEESSFATLFPKYREIYLRECWPLVKKALGEYNIKAELDV 76
Query: 87 VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNK 146
+EGSMTV T+RKT DPYII+KARD+++LL+RSVP QA+KIL+D++ CDIIKIG +NK
Sbjct: 77 IEGSMTVKTSRKTWDPYIILKARDMVKLLARSVPYEQAVKILNDDVACDIIKIGTQTQNK 136
Query: 147 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
+RFVKRRQ L+GPN STLKALE+LT CYILVQGNTV+A+G ++GL+QVRR+VED M+N +
Sbjct: 137 DRFVKRRQRLIGPNGSTLKALELLTNCYILVQGNTVSAVGPYRGLQQVRRVVEDTMEN-I 195
Query: 207 HPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK--VKSKEKKPYTPFPPPP 264
HP+YHIK LM+K+EL +D L NE+W+RFLP KN ++K K + KK YTPFPP P
Sbjct: 196 HPIYHIKALMIKRELARDEKLKNESWERFLPTIPHKNTSKRKQPAKKRAKKEYTPFPPAP 255
Query: 265 QPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSC 324
SK+DKLL +GEYFL E +++ +K E QEKQ + K +R++AFIPP+EPS +
Sbjct: 256 PESKVDKLLATGEYFLKEDQRKQRKKNENQEKQEQAEVRRKERRESAFIPPQEPSTSSGA 315
Query: 325 EAEDKTNDVAAMAKSLKEKAKK 346
+ T+D+ + LK K +K
Sbjct: 316 KEFTSTSDIN--VEELKNKIRK 335
>gi|325187444|emb|CCA21982.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 408
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 243/324 (75%), Gaps = 14/324 (4%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEG----------GMLEVSSFST 54
M ++V KK H K KPWD D N D WK++ + + +LE SSF+T
Sbjct: 32 MTESVAKKAIN-HRKDKPWDTDDN-DRWKIDAWQDTIEDDKRPGQTVQLPNLLEESSFAT 89
Query: 55 LFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRL 114
LFP+YREKYL+E WP+V AL Y ++CELNLVEGSM+V TTRKT+DP+I++KARDLI+L
Sbjct: 90 LFPKYREKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKL 149
Query: 115 LSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCY 174
L+RS+P QA++IL D++ CDIIKIG LVRNKERFVKRRQ LVGP+ +T KA+E+LT CY
Sbjct: 150 LARSIPVNQAVEILKDDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCY 209
Query: 175 ILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDR 234
ILVQGNTVAAMGS++GL+ VR IVEDC N +HP+Y++K LM+K+EL KD AL NENWDR
Sbjct: 210 ILVQGNTVAAMGSYQGLRSVRNIVEDCFAN-IHPIYNVKRLMIKRELAKDEALRNENWDR 268
Query: 235 FLPKFKKKNVKQKKVKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 293
FLP+FKKKNV++KK K KK YTPFPP P PSK+DK +ESGEYF+ E ++++ + +EK
Sbjct: 269 FLPQFKKKNVQRKKPKDVHKKKEYTPFPPLPTPSKLDKEIESGEYFMKEHERKALRKREK 328
Query: 294 QEKQAEKTAENKRKRDAAFIPPEE 317
+ + E + K ++ A F+ P +
Sbjct: 329 KASKEEVIQQRKSEKKAGFVAPSD 352
>gi|159465269|ref|XP_001690845.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279531|gb|EDP05291.1| predicted protein [Chlamydomonas reinhardtii]
Length = 319
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 197/320 (61%), Positives = 235/320 (73%), Gaps = 22/320 (6%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+H + KPWD D IDHWKV+ F P N G+LE SSF+TLFP+YREKYL+E WP V AL
Sbjct: 1 QHRREKPWDHD-GIDHWKVDAFKPEDNPNGLLEESSFATLFPKYREKYLREVWPAVTKAL 59
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS-VPAPQ---------AI 125
K+ G+ CELNLVEGSMTV TTRKT DPY I+KARDLI+LL+RS VP+ +I
Sbjct: 60 KDMGIGCELNLVEGSMTVRTTRKTWDPYAIIKARDLIKLLARSEVPSADVLSACALAVSI 119
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 185
D+MQCDIIKI ++RNKE+FVKRRQ L+GPN STLKALE+LTGCY+LVQGNTV+AM
Sbjct: 120 STQQDDMQCDIIKISGIIRNKEKFVKRRQRLIGPNGSTLKALELLTGCYMLVQGNTVSAM 179
Query: 186 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF------ 239
G +KGLKQ+RRIVEDC++N +HP+YHIK LM+K+EL KDPALA ENWDRFLPKF
Sbjct: 180 GPYKGLKQLRRIVEDCIKN-VHPIYHIKTLMIKRELAKDPALAEENWDRFLPKFKKKNVK 238
Query: 240 ----KKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 295
+ K + K KK YTPFPPP PSK+D LESGEYFLSE +K + K
Sbjct: 239 RKKPEAKPADEAGGKEAAKKVYTPFPPPMPPSKMDLQLESGEYFLSEEQKRERARAAKDA 298
Query: 296 KQAEKTAENKRKRDAAFIPP 315
Q KTAE KR+R+AAF+ P
Sbjct: 299 AQEAKTAERKRQREAAFVAP 318
>gi|449550042|gb|EMD41007.1| hypothetical protein CERSUDRAFT_103362 [Ceriporiopsis subvermispora
B]
Length = 395
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 250/349 (71%), Gaps = 36/349 (10%)
Query: 1 MGENMEKT--VNKKHKGKHDKPKPWDEDPNIDH-WKVEKFDPFWNEGGML-EVSSFSTLF 56
MG+ +E+T VNK + + K KPWD D +IDH WK++ F N+GG E SSF+TLF
Sbjct: 1 MGDVVEETPIVNKNKRFR--KEKPWDTD-DIDHFWKIDPFKVEDNKGGAFTEESSFATLF 57
Query: 57 PQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLS 116
P+YREKYL+E W V AL+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+++LL+
Sbjct: 58 PKYREKYLREVWSAVTKALESHGIACTLDLIHGSMSVRTTRKTYDPYIILKARDMVKLLA 117
Query: 117 RSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYIL 176
R V QA+KILDD + CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+L
Sbjct: 118 RGVAIGQAVKILDDTVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVL 177
Query: 177 VQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFL 236
VQG+TV+ MG +KGLK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFL
Sbjct: 178 VQGSTVSVMGPYKGLKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPQLATESWDRFL 236
Query: 237 PKFKKKNVK--QKKVKSKE--------------------------KKPYTPFPPPPQPSK 268
PKF+K+++K +K K E KK YTPFPP QP K
Sbjct: 237 PKFRKRHLKTSEKTAKKNERIQEKNEARQAAGLPTIQEAQKEKPAKKVYTPFPPAQQPRK 296
Query: 269 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+D LESGEYFL +K++++ ++++EKQ E TAE + KR AF+ P E
Sbjct: 297 VDLQLESGEYFLKAHEKQAREDRKRKEKQEEVTAERRAKRAEAFVAPTE 345
>gi|325187446|emb|CCA21984.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 377
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 243/324 (75%), Gaps = 14/324 (4%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEG----------GMLEVSSFST 54
M ++V KK H K KPWD D N D WK++ + + +LE SSF+T
Sbjct: 1 MTESVAKKAIN-HRKDKPWDTDDN-DRWKIDAWQDTIEDDKRPGQTVQLPNLLEESSFAT 58
Query: 55 LFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRL 114
LFP+YREKYL+E WP+V AL Y ++CELNLVEGSM+V TTRKT+DP+I++KARDLI+L
Sbjct: 59 LFPKYREKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKL 118
Query: 115 LSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCY 174
L+RS+P QA++IL D++ CDIIKIG LVRNKERFVKRRQ LVGP+ +T KA+E+LT CY
Sbjct: 119 LARSIPVNQAVEILKDDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCY 178
Query: 175 ILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDR 234
ILVQGNTVAAMGS++GL+ VR IVEDC N +HP+Y++K LM+K+EL KD AL NENWDR
Sbjct: 179 ILVQGNTVAAMGSYQGLRSVRNIVEDCFAN-IHPIYNVKRLMIKRELAKDEALRNENWDR 237
Query: 235 FLPKFKKKNVKQKKVKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 293
FLP+FKKKNV++KK K KK YTPFPP P PSK+DK +ESGEYF+ E ++++ + +EK
Sbjct: 238 FLPQFKKKNVQRKKPKDVHKKKEYTPFPPLPTPSKLDKEIESGEYFMKEHERKALRKREK 297
Query: 294 QEKQAEKTAENKRKRDAAFIPPEE 317
+ + E + K ++ A F+ P +
Sbjct: 298 KASKEEVIQQRKSEKKAGFVAPSD 321
>gi|189189298|ref|XP_001930988.1| 90S preribosome/SSU processome component KRR1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187972594|gb|EDU40093.1| ribosomal RNA assembly protein mis3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 342
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/304 (61%), Positives = 230/304 (75%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD D +ID WK+E F P N G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HNVDKPWDTD-DIDKWKIEPFKPEDNTAGAFTDESRFSTLFPKYREQYLKGSWKFITQAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILDDE+ D
Sbjct: 64 QKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSVPAPQAVKILDDEVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTVAAMG +KGLKQVR
Sbjct: 124 IIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVAAMGPYKGLKQVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RIVED M N +HP+Y IK LM+KKEL KDP L NE+WDRFLP FKK+++ ++ KV
Sbjct: 184 RIVEDTMHN-VHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVND 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP + SK+D +ESGEYFL + KE K +E++EK +K +R+R
Sbjct: 243 KTKKTYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKVQEEREEKMKDKMDAKRRERMQE 302
Query: 312 FIPP 315
++ P
Sbjct: 303 YVAP 306
>gi|325187445|emb|CCA21983.1| ribosomal RNA assembly protein mis3 putative [Albugo laibachii
Nc14]
Length = 417
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 243/324 (75%), Gaps = 14/324 (4%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEG----------GMLEVSSFST 54
M ++V KK H K KPWD D N D WK++ + + +LE SSF+T
Sbjct: 41 MTESVAKKAIN-HRKDKPWDTDDN-DRWKIDAWQDTIEDDKRPGQTVQLPNLLEESSFAT 98
Query: 55 LFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRL 114
LFP+YREKYL+E WP+V AL Y ++CELNLVEGSM+V TTRKT+DP+I++KARDLI+L
Sbjct: 99 LFPKYREKYLREIWPIVTKALDNYKIACELNLVEGSMSVRTTRKTKDPFIVMKARDLIKL 158
Query: 115 LSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCY 174
L+RS+P QA++IL D++ CDIIKIG LVRNKERFVKRRQ LVGP+ +T KA+E+LT CY
Sbjct: 159 LARSIPVNQAVEILKDDVHCDIIKIGGLVRNKERFVKRRQRLVGPDGATQKAIELLTNCY 218
Query: 175 ILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDR 234
ILVQGNTVAAMGS++GL+ VR IVEDC N +HP+Y++K LM+K+EL KD AL NENWDR
Sbjct: 219 ILVQGNTVAAMGSYQGLRSVRNIVEDCFAN-IHPIYNVKRLMIKRELAKDEALRNENWDR 277
Query: 235 FLPKFKKKNVKQKKVKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 293
FLP+FKKKNV++KK K KK YTPFPP P PSK+DK +ESGEYF+ E ++++ + +EK
Sbjct: 278 FLPQFKKKNVQRKKPKDVHKKKEYTPFPPLPTPSKLDKEIESGEYFMKEHERKALRKREK 337
Query: 294 QEKQAEKTAENKRKRDAAFIPPEE 317
+ + E + K ++ A F+ P +
Sbjct: 338 KASKEEVIQQRKSEKKAGFVAPSD 361
>gi|409082561|gb|EKM82919.1| hypothetical protein AGABI1DRAFT_82619 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 388
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/334 (55%), Positives = 239/334 (71%), Gaps = 35/334 (10%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +IDHWK++ F N+GG E SSF+TLFP+YREKYL+E W V AL
Sbjct: 15 HRKDKPWDTD-DIDHWKIDPFKQDDNKGGAFTEESSFATLFPKYREKYLREVWSAVTRAL 73
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+++LL+R V QA+KIL+D+M CD
Sbjct: 74 ETHGIACTLDLLNGSMSVRTTRKTFDPYIILKARDMVKLLARGVAVNQAVKILEDDMACD 133
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+AMG +K LK+VR
Sbjct: 134 IIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSAMGPYKSLKEVR 193
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK------- 248
RIV DCM+N +HP+Y IK LM++KEL KDP LA+E WDRFLPKF+K+++K +
Sbjct: 194 RIVLDCMKN-IHPIYRIKELMIRKELAKDPKLASEPWDRFLPKFRKQHLKTSEKTAKKNE 252
Query: 249 -------------------------VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSER 283
K K+KK YTPFPP QP KID LESGEYFL R
Sbjct: 253 RLEARAEARTAAGLAADTEQAKKGLQKEKQKKLYTPFPPMQQPRKIDLQLESGEYFLKAR 312
Query: 284 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+KE+++ ++++Q E T + K++R AFI P E
Sbjct: 313 EKEAREVGRRKQEQLEMTTKRKKERAKAFIAPIE 346
>gi|429849292|gb|ELA24695.1| rRNA assembly protein [Colletotrichum gloeosporioides Nara gc5]
Length = 323
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/306 (60%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WKV+ F P N GG E SSF+ +FP+YRE YL+EAWP+V +L
Sbjct: 5 YKKDKPWDTD-DIDKWKVDPFTPADNAGGTFAEESSFAIVFPKYREVYLKEAWPLVTKSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKILDD + CD
Sbjct: 64 EKHGIACSLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILDDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI +LVRNKER+VKRRQ ++GPN STLKALE+LT YILVQG+TV+ MG +KGLK+VR
Sbjct: 124 VIKIRSLVRNKERYVKRRQRILGPNGSTLKALELLTQTYILVQGSTVSVMGPYKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP LA+E+WDRFLP FKKK + ++ KV
Sbjct: 184 RVVEDCMNN-IHPIYHIKELMIKRELAKDPELASESWDRFLPNFKKKTLSKRRVPLKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +E+GEYFL + K E+ E+Q +K E R+R+
Sbjct: 243 KAKKTYTPFPPAPEKSKVDKQIETGEYFLGKEAKAKAAQAERIEQQKQKKEEKLREREKD 302
Query: 312 FIPPEE 317
F+PPEE
Sbjct: 303 FVPPEE 308
>gi|50422687|ref|XP_459920.1| 90S preribosome/SSU processome component KRR1 [Debaryomyces
hansenii CBS767]
gi|49655588|emb|CAG88162.1| DEHA2E14146p [Debaryomyces hansenii CBS767]
Length = 360
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 188/312 (60%), Positives = 237/312 (75%), Gaps = 8/312 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD + +ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V
Sbjct: 5 HNRDKPWDTE-DIDKWSIEEFKPEDNASGLHFTEESSFMTLFPKYREQYLRTIWSDVTRN 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L +Y + C+L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKYFIDCQLDLVEGSMTVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM N +HP+Y+IK LM+K+EL K+P LA+E+W RFLP F+K+NV +KK K +
Sbjct: 184 RRVVEDCMNN-VHPIYYIKELMIKQELAKNPELAHEDWSRFLPMFRKRNVARKKSKKIGE 242
Query: 255 KP----YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 310
K YTPFPP P K+D +ESGEYFL +++KE KK QEK++KQ E T K++R
Sbjct: 243 KKEKKVYTPFPPAQLPRKVDLQIESGEYFLGKKEKERKKLQEKRDKQEEATEVKKQERLK 302
Query: 311 AFIPPEEPSRQN 322
F PEE S +N
Sbjct: 303 DFEAPEENSYEN 314
>gi|402083986|gb|EJT79004.1| ribosomal RNA assembly protein KRR1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 320
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 191/308 (62%), Positives = 233/308 (75%), Gaps = 7/308 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WKV+ F P N GG E SSF TLFP+YRE YL++ WP+V AL
Sbjct: 5 YKKDKPWDTD-DIDKWKVDPFTPADNTGGTFAEESSFVTLFPKYREVYLRQCWPLVTKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ +G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 ERHGIATTLDLVEGSMTVKTTRKTFDPASILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
I+KI NLV NKERFVKRRQ ++GPN STLKALE+LT YILV GNTV+ MG FKGLK+VR
Sbjct: 124 IVKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTSTYILVHGNTVSVMGPFKGLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+Y IK LMVK+EL KDPALANE+WDRFLP FKK+++ + KV
Sbjct: 184 RVVEDCMAN-IHPIYLIKELMVKRELAKDPALANESWDRFLPNFKKRSLSHRRVPHKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YT FPP P+ SK+D +ESGEYFL + K+ E+QEK E+ E KR+R+
Sbjct: 243 KSKKTYTAFPPAPEKSKVDLQIESGEYFLGKEAKQRAAEAERQEKAKERKEERKREREKD 302
Query: 312 FIPPEEPS 319
F+PPEEP
Sbjct: 303 FVPPEEPG 310
>gi|126132748|ref|XP_001382899.1| 90S preribosome/SSU processome component KRR1 [Scheffersomyces
stipitis CBS 6054]
gi|126094724|gb|ABN64870.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 356
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/310 (59%), Positives = 238/310 (76%), Gaps = 6/310 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD +ID W +E+F P N G E SSF TLFP+YRE+YL+ W V +
Sbjct: 5 HNRDKPWD-TADIDKWALEEFKPEHNASGQHFTEESSFMTLFPKYREQYLRSIWADVTKS 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L+++ + CEL+LVEG+MTV TT KT DP II+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LEKHFIKCELDLVEGAMTVKTTTKTFDPAIILKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS--K 252
RR+VEDCM+N +HP+Y+IK LM+K+EL K P LA E+W RFLP FKK+NV +KK KS +
Sbjct: 184 RRVVEDCMRN-VHPIYYIKELMIKQELSKKPELAEEDWSRFLPSFKKRNVARKKAKSSKR 242
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
EKK YTPFPP P K+D +ESGEYFL +++K KK +EK+EKQ E + K++R+ +
Sbjct: 243 EKKVYTPFPPAQTPRKVDLQVESGEYFLGKKEKAMKKLKEKREKQEEASVARKQEREKDY 302
Query: 313 IPPEEPSRQN 322
+ PEE +N
Sbjct: 303 VAPEEEKYEN 312
>gi|241949981|ref|XP_002417713.1| 90S preribosome/SSU processome component KRR1 [Candida dubliniensis
CD36]
gi|223641051|emb|CAX45425.1| ribosomal RNA assembly protein, putative [Candida dubliniensis
CD36]
Length = 370
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 192/311 (61%), Positives = 240/311 (77%), Gaps = 7/311 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWALEEFKPEHNASGLHFAEESSFMTLFPKYREQYLRSIWSDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHFIKCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-- 252
RR+VEDCM+N +HP+Y+IK LM+K+EL K+PALANE+W RFLP FKK+NV +KK SK
Sbjct: 184 RRVVEDCMKN-IHPIYYIKELMIKQELSKNPALANEDWSRFLPSFKKRNVARKKKTSKKS 242
Query: 253 -EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP QP KID +ESGEYFL +++KE KK QEK+ KQ E + +++R
Sbjct: 243 IEKKVYTPFPPAQQPRKIDLQIESGEYFLGKKEKELKKLQEKRSKQEEVSETKRQERAKD 302
Query: 312 FIPPEEPSRQN 322
F PEE +N
Sbjct: 303 FEAPEEEVYEN 313
>gi|68484447|ref|XP_713834.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|68484528|ref|XP_713795.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|46435308|gb|EAK94692.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|46435349|gb|EAK94732.1| potential nucleolar ribosome biogenesis factor Krr2p [Candida
albicans SC5314]
gi|238878458|gb|EEQ42096.1| ribosomal RNA assembly protein mis3 [Candida albicans WO-1]
Length = 358
Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 192/311 (61%), Positives = 240/311 (77%), Gaps = 7/311 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWALEEFKPEHNASGLHFAEESSFMTLFPKYREQYLRSIWSDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CEL+LVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHFIKCELDLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-- 252
RR+VEDCM+N +HP+Y+IK LM+K+EL K+PALANE+W RFLP FKK+NV +KK SK
Sbjct: 184 RRVVEDCMKN-IHPIYYIKELMIKQELSKNPALANEDWSRFLPSFKKRNVARKKKTSKKS 242
Query: 253 -EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP QP KID +ESGEYFL +++KE KK QEK+ KQ E + +++R
Sbjct: 243 VEKKVYTPFPPAQQPRKIDLQIESGEYFLGKKEKELKKLQEKRSKQEEVSETKRQERAKD 302
Query: 312 FIPPEEPSRQN 322
F PEE +N
Sbjct: 303 FEAPEEEVYEN 313
>gi|426200426|gb|EKV50350.1| hypothetical protein AGABI2DRAFT_190677 [Agaricus bisporus var.
bisporus H97]
Length = 392
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 182/336 (54%), Positives = 239/336 (71%), Gaps = 35/336 (10%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK++ F N+GG E SSF+TLFP+YREKYL+E W V AL
Sbjct: 15 HRKDKPWDTD-DIDQWKIDPFKQDDNKGGAFTEESSFATLFPKYREKYLREVWSAVTRAL 73
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+++LL+R V QA+KIL+D+M CD
Sbjct: 74 ETHGIACTLDLLNGSMSVRTTRKTFDPYIILKARDMVKLLARGVAVNQAVKILEDDMACD 133
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+AMG +K LK+VR
Sbjct: 134 IIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSAMGPYKSLKEVR 193
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK------- 248
RIV DCM+N +HP+Y IK LM++KEL KDP LA+E WDRFLPKF+K+++K +
Sbjct: 194 RIVLDCMKN-IHPIYRIKELMIRKELAKDPKLASEPWDRFLPKFRKQHLKTSEKTAKKNE 252
Query: 249 -------------------------VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSER 283
K K+KK YTPFPP QP KID LESGEYFL R
Sbjct: 253 RLEARAEARTAAGLAADTEQAKKGLQKEKQKKLYTPFPPMQQPRKIDLQLESGEYFLKAR 312
Query: 284 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 319
+KE+++ ++++Q E T + K++R AF+ P E +
Sbjct: 313 EKEAREVGRRKQEQLEMTNKRKKERAKAFVAPIETA 348
>gi|154290221|ref|XP_001545709.1| 90S preribosome/SSU processome component KRR1 [Botryotinia
fuckeliana B05.10]
gi|347840709|emb|CCD55281.1| hypothetical protein [Botryotinia fuckeliana]
Length = 349
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 175/282 (62%), Positives = 224/282 (79%), Gaps = 7/282 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++K KPWD D +ID WK+E F P N GG E SSF+TLFP+YRE YL+ WP++ +L
Sbjct: 5 YNKEKPWDTD-DIDKWKIEAFTPADNAGGTFTEESSFATLFPKYREVYLKTVWPLIMKSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++ L+L EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 EKFGIAATLDLREGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI NLVRNKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTV+AMG +KGLK++R
Sbjct: 124 VIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVSAMGPYKGLKEIR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKS 251
RI+EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+FKK+N+ +++ V
Sbjct: 184 RIIEDCMAN-IHPIYHIKELMIKRELAKDPELAGESWDRFLPQFKKRNLNKRRVPRNVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 293
K KK YTPFPP + SK+D +ESGEYFL ++ KE K +E+
Sbjct: 243 KSKKVYTPFPPAQEKSKVDLQIESGEYFLGKQAKERKVQEER 284
>gi|146415907|ref|XP_001483923.1| hypothetical protein PGUG_03304 [Meyerozyma guilliermondii ATCC
6260]
gi|146391048|gb|EDK39206.1| hypothetical protein PGUG_03304 [Meyerozyma guilliermondii ATCC
6260]
Length = 340
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 182/309 (58%), Positives = 237/309 (76%), Gaps = 5/309 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W V++F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWHVDEFKPEDNASGLPFAEESSFMTLFPKYREQYLRTIWSEVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C+L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+K+L D++ C
Sbjct: 64 LDKHNIACQLDLVEGSMTVKTTRKTYDPAIIIKARDLIKLLARSVPFPQAVKVLQDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KGLK+V
Sbjct: 124 DVIKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTNCYILVQGNTVSAMGPYKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK + +K
Sbjct: 184 RRVVEDCMKN-VHPIYHIKELMIKQELSKKPELANEDWSRFLPMFKKRNVARKKKAAPDK 242
Query: 255 KP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
K YTPFPP P K+D +ESGEYFL +R+K+ Q+K++KQ E + + +++ +
Sbjct: 243 KKVYTPFPPAQTPRKVDLQIESGEYFLGKREKKQNDLQKKRDKQEEVSEQKNKEKLRGYE 302
Query: 314 PPEEPSRQN 322
PEE +N
Sbjct: 303 APEEQLHEN 311
>gi|406604799|emb|CCH43784.1| Ribosomal RNA assembly protein KRR1 [Wickerhamomyces ciferrii]
Length = 355
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 186/316 (58%), Positives = 238/316 (75%), Gaps = 12/316 (3%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID WK+E+F P N G E SSF TLFP+YRE YL++ WP V A
Sbjct: 5 HNRDKPWDT-PDIDKWKLEEFKPEDNVSGQPFAEESSFMTLFPKYREVYLKQIWPDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEG+M+V TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LDKHHIACTLDLVEGAMSVKTTRKTFDPAIILKARDLIKLLARSVPFPQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RF KRRQ LVGP+ +TLKALE+LT CYILVQGNTV+AMG F+GLK+V
Sbjct: 124 DVIKIGNFVTNKDRFTKRRQRLVGPSGNTLKALELLTKCYILVQGNTVSAMGPFRGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS--- 251
RR+VEDCM+N +HP+YHIK LM+K+EL+K P LANE+W R+LP+FKKKNV +KK K
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELQKKPELANEDWSRYLPQFKKKNVARKKPKQVRD 242
Query: 252 -----KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 306
KEKK YTPFPP P K+D +ESGEYFL++++K K+ Q K+EKQ E
Sbjct: 243 DQEKKKEKKVYTPFPPAQLPRKVDLQIESGEYFLNKKEKRVKELQAKKEKQEEHKITRDE 302
Query: 307 KRDAAFIPPEEPSRQN 322
+R ++ PEE +N
Sbjct: 303 ERAKDYVAPEEDKYEN 318
>gi|302309082|ref|NP_986293.2| 90S preribosome/SSU processome component KRR1 [Ashbya gossypii ATCC
10895]
gi|299790936|gb|AAS54117.2| AFR744Wp [Ashbya gossypii ATCC 10895]
gi|374109527|gb|AEY98433.1| FAFR744Wp [Ashbya gossypii FDAG1]
Length = 343
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 189/305 (61%), Positives = 243/305 (79%), Gaps = 5/305 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD P++D W +E+F+P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWD-TPDVDKWAIEEFNPEDNASGLPFAEESSFMTLFPKYRETYLKSIWKEVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L+++ ++CELNLVEGSM+V TTRKT DP II+KARDLI+LL+RSVP PQAIKIL D++ C
Sbjct: 64 LEKHHIACELNLVEGSMSVKTTRKTYDPAIILKARDLIKLLARSVPLPQAIKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN+V +KERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG +KGLK+V
Sbjct: 124 DVIKIGNIVASKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKE 253
RR+VEDCM+N +HP+YHIK LM+K+EL K P LA E+W RFLP FKK+NV ++K K KE
Sbjct: 184 RRVVEDCMRN-IHPIYHIKELMIKRELAKRPELAEEDWSRFLPMFKKRNVARKKPKKIKE 242
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KK YTPFPP P K+D +E+GEYFLS+++KE+KK + ++ +QAEK +E +++R +I
Sbjct: 243 KKVYTPFPPAQLPRKVDLEIETGEYFLSKKEKEAKKLEARRAQQAEKQSEKEKERAKDYI 302
Query: 314 PPEEP 318
P EP
Sbjct: 303 APAEP 307
>gi|342320728|gb|EGU12667.1| Hypothetical Protein RTG_01217 [Rhodotorula glutinis ATCC 204091]
Length = 394
Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 193/346 (55%), Positives = 241/346 (69%), Gaps = 40/346 (11%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGM----LEVSSFSTLFPQYREKYL 64
K K H K KPWD + DHWKV DP W EG M LE SSF+TLF +YRE YL
Sbjct: 35 AGKSKKQMHRKDKPWDVE-GTDHWKV---DP-WAEGEMRGPLLEESSFATLFAKYRETYL 89
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
+E W V AL+++G+ L+LVEGSMTV TTRKT DPYII+KARD+I+LL+RSVP PQA
Sbjct: 90 REIWGHVTAALEKHGIVATLDLVEGSMTVKTTRKTHDPYIILKARDMIKLLARSVPFPQA 149
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA 184
++IL+D M CDIIKIGN++RN ERFVKRRQ ++GP STLKA+E+LT CY+LVQGNTVAA
Sbjct: 150 VRILEDGMDCDIIKIGNIIRNTERFVKRRQRILGPGGSTLKAIELLTQCYVLVQGNTVAA 209
Query: 185 MGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKN- 243
MG KGLK+VR+IV DCM+N +HP+YHIK LM+K+EL KDP LA+ENWDRFLPKF+++
Sbjct: 210 MGGHKGLKEVRKIVIDCMKN-IHPIYHIKELMIKRELAKDPKLASENWDRFLPKFRRRRE 268
Query: 244 -----------------VKQKKVKSKEKK-----------PYTPFPPPPQPSKIDKLLES 275
V S E + PYTPFPP QPSKID LES
Sbjct: 269 KKRGPPAAEGSGVNGIPVNGDASTSAEAQPPAKKQKKEKKPYTPFPPAQQPSKIDLQLES 328
Query: 276 GEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE-PSR 320
GEYFL R+K+ ++ ++++ KQAE TA + +R AF+ P+E P+R
Sbjct: 329 GEYFLKPREKQQREEEKRKAKQAEATAARQEERAKAFVAPDEAPAR 374
>gi|402226410|gb|EJU06470.1| hypothetical protein DACRYDRAFT_45074 [Dacryopinax sp. DJM-731 SS1]
Length = 397
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 182/360 (50%), Positives = 245/360 (68%), Gaps = 47/360 (13%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQY 59
M + + VNK + + DKP WD D +IDHWKV+ F+ N+GG L+ SSF+TLFP+Y
Sbjct: 1 MSDTEQVEVNKNKRFRKDKP--WDTD-DIDHWKVDTFEAADNKGGTFLQESSFATLFPKY 57
Query: 60 REKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 119
REKYL+E W +V +L+ +G++C L+L+ GSM+V TTRKT DPYII KARD+I+LL+R V
Sbjct: 58 REKYLREVWGVVTTSLEAHGIACMLDLIHGSMSVRTTRKTFDPYIIFKARDMIKLLARGV 117
Query: 120 PAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG 179
QA+KILDD + CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG
Sbjct: 118 AVGQAVKILDDAVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 177
Query: 180 NTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF 239
NTV+ MG +K LK+VRRIV DCM N +HP+Y IK LM+++EL KDP LANE+WDRFLPKF
Sbjct: 178 NTVSVMGPYKSLKEVRRIVIDCMNN-IHPIYRIKELMIRRELAKDPKLANESWDRFLPKF 236
Query: 240 KKKNVKQKKVKSKEK------------------------------------------KPY 257
+K+N+ + +K++ K Y
Sbjct: 237 RKRNLTSAEKSAKKRARDEGEEAQNGAQEAFPKEEDQAESSTAPPKEEKKEKKEKKKKTY 296
Query: 258 TPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
TPFPP PSK+D LE+GEYFL + +K ++ Q+++E Q E + KR+R+ AF+ P+E
Sbjct: 297 TPFPPAQLPSKVDIALETGEYFLKKHEKVRREVQKREEVQQEVVRKRKREREEAFVAPKE 356
>gi|302833165|ref|XP_002948146.1| hypothetical protein VOLCADRAFT_103772 [Volvox carteri f.
nagariensis]
gi|300266366|gb|EFJ50553.1| hypothetical protein VOLCADRAFT_103772 [Volvox carteri f.
nagariensis]
Length = 442
Score = 363 bits (931), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 206/350 (58%), Positives = 246/350 (70%), Gaps = 37/350 (10%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
K KGKH + KPWD + IDHWKVE F P N G+LE SSF+TLFP+YREKYL+E WP V
Sbjct: 21 KKKGKHRRDKPWDHE-GIDHWKVEPFKPEDNPSGLLEESSFATLFPKYREKYLREVWPAV 79
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
ALK+ G+ CELNLVEGSMTV TTRKT DP+ I+KARDLI+LL+RSVPAPQA+KIL
Sbjct: 80 TKALKDVGIGCELNLVEGSMTVRTTRKTWDPFAIIKARDLIKLLARSVPAPQALKIL--- 136
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
+E+FVKRRQ L+GPN STLKALE+LTGCY+LVQGNTVAAMG +KGL
Sbjct: 137 --------------QEKFVKRRQRLIGPNGSTLKALELLTGCYMLVQGNTVAAMGPYKGL 182
Query: 192 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK---- 247
KQ+R++VEDC++N +HP+YHIK LM+K+EL KDPALA ENWDRFLPKFKKKNVK+K
Sbjct: 183 KQIRKVVEDCIKN-IHPIYHIKTLMIKRELAKDPALATENWDRFLPKFKKKNVKRKKPEE 241
Query: 248 ---KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
K + KK YTPFPPP PSK+D LESGEYFLSE +K + K Q +TAE
Sbjct: 242 AANKAGEEAKKVYTPFPPPMPPSKLDLALESGEYFLSEEQKRERARAAKDAAQEARTAER 301
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKT-----------NDVAAMAKSLKEK 343
R+R AAFI P+E + DV +A+SLK+K
Sbjct: 302 LRQRQAAFIAPKENGPSTTGRGSGGVQQQQEQSKQGGEDVRVLAESLKKK 351
>gi|156045189|ref|XP_001589150.1| 90S preribosome/SSU processome component KRR1 [Sclerotinia
sclerotiorum 1980 UF-70]
gi|154694178|gb|EDN93916.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 349
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 174/277 (62%), Positives = 220/277 (79%), Gaps = 7/277 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++K KPWD +ID WK+E F P N GG E SSF TLFP+YRE YL+ WP++ +L
Sbjct: 5 YNKEKPWDTG-DIDKWKIEAFTPADNVGGTFAEESSFVTLFPKYREVYLKTVWPLIMKSL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++ L+L EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D + CD
Sbjct: 64 EKFGIAATLDLREGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI NLVRNKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTV+AMG +KGLK++R
Sbjct: 124 VIKIRNLVRNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVSAMGPYKGLKEIR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKS 251
RI+EDCM N +HP+YHIK LM+K+EL KDP LA E+WDRFLP+FKK+N+ +++ V
Sbjct: 184 RIIEDCMAN-IHPIYHIKELMIKRELAKDPELAGESWDRFLPQFKKRNLSKRRVPRNVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESK 288
K KK YTPFPPP + SK+D +ESGEYFL ++ KE K
Sbjct: 243 KAKKVYTPFPPPQEKSKVDLQIESGEYFLGKQAKERK 279
>gi|340960838|gb|EGS22019.1| hypothetical protein CTHT_0039040 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 322
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 185/305 (60%), Positives = 236/305 (77%), Gaps = 6/305 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D +ID WK+E F P + G LE SSF TLFP+YRE+YL++ WP+V AL+
Sbjct: 5 HKKDKPWDTD-DIDKWKIEPFLPEHSSGPFLEESSFMTLFPKYRERYLKDCWPLVTKALE 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++G++ L++VEGSMTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KIL+D M CDI
Sbjct: 64 KHGIAATLDIVEGSMTVKTTRKTYDPAAILKARDLIKLLARSVPAPQALKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
IKI ++VRNKERFVKRRQ L+G N +TLKALE+LT YILV GNTV+ MG +KGLK+VRR
Sbjct: 124 IKIRSMVRNKERFVKRRQRLLGQNGTTLKALELLTQTYILVHGNTVSVMGGYKGLKEVRR 183
Query: 197 IVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 252
+VED M N +HP+Y IK LM+K+EL KDPALA+E+W R+LP+FKK+ + ++ K+ K
Sbjct: 184 VVEDTMNN-IHPIYLIKELMIKRELAKDPALAHEDWSRYLPQFKKRTLSKRRKPFKINDK 242
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
KKPYTPFPP P+ SKID +ESGEYFLS+ K+ E+ EK +K E KR+R+ F
Sbjct: 243 SKKPYTPFPPAPEKSKIDLQIESGEYFLSKEAKQRAAEAERAEKARQKKEEKKREREKEF 302
Query: 313 IPPEE 317
+PPEE
Sbjct: 303 VPPEE 307
>gi|367053715|ref|XP_003657236.1| 90S preribosome/SSU processome component KRR1 [Thielavia terrestris
NRRL 8126]
gi|347004501|gb|AEO70900.1| hypothetical protein THITE_2122753 [Thielavia terrestris NRRL 8126]
Length = 321
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 187/307 (60%), Positives = 234/307 (76%), Gaps = 6/307 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D +ID WK+E F + G LE SSF TLFP+YRE+YL++AWP+V AL
Sbjct: 5 HKKDKPWDTD-DIDKWKIEPFTKEDSSGPFLEESSFMTLFPKYRERYLKDAWPLVTKALD 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++G+ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 64 KHGIKATLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
IKI N+VRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG +KGLK+VRR
Sbjct: 124 IKIRNMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPYKGLKEVRR 183
Query: 197 IVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 252
+VED MQN +HP+Y IK LM+K+EL KDPALA+E+W R+LP FKK+ + ++ KV K
Sbjct: 184 VVEDTMQN-IHPIYLIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRKPFKVTDK 242
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
KKPYTPFPP P+ SK+D +ESGEYFLS+ K+ E+ EK +K E KR+R+ F
Sbjct: 243 SKKPYTPFPPAPEKSKVDMQIESGEYFLSKEAKQRAAEAERAEKAKQKKEEKKREREREF 302
Query: 313 IPPEEPS 319
+PPEE +
Sbjct: 303 VPPEEST 309
>gi|302413862|ref|XP_003004763.1| 90S preribosome/SSU processome component KRR1 [Verticillium
albo-atrum VaMs.102]
gi|261355832|gb|EEY18260.1| ribosomal RNA assembly protein KRR1 [Verticillium albo-atrum
VaMs.102]
Length = 319
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 184/304 (60%), Positives = 228/304 (75%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+K KPWD + +ID WKVE F P N GG +E SSFS LFP+YRE YL+EAWP+V +L
Sbjct: 4 HEKDKPWDTE-DIDKWKVETFKPTDNVGGSFVEESSFSVLFPKYREVYLKEAWPLVTKSL 62
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++YG++C L+L+EGSMTV TTRKT DP ++ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 63 EKYGIACSLDLIEGSMTVKTTRKTYDPAAVLNARDLIKLLARSVPAPQAVKILEDGVACD 122
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLV NK+RFVKRRQ L+GPN STLKALE+LT YILV GNTV+AMG +KGLK+VR
Sbjct: 123 IIKIRNLVGNKDRFVKRRQRLLGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKEVR 182
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI M N +HP+Y IK LM+K+EL KDP LANE+WDRFLP F KK + + KV
Sbjct: 183 RIAIQTMDN-IHPIYAIKQLMIKRELAKDPELANESWDRFLPDFGKKTLSHRRVPHKVSD 241
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +ESGEYFL + K QE+ E Q +K E +KR+
Sbjct: 242 KSKKVYTPFPPAPEKSKVDKQIESGEYFLGKEAKARAVAQERVESQKQKKEEKLQKRERE 301
Query: 312 FIPP 315
++ P
Sbjct: 302 YVAP 305
>gi|170106401|ref|XP_001884412.1| 90S preribosome/SSU processome component KRR1 [Laccaria bicolor
S238N-H82]
gi|164640758|gb|EDR05022.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 410
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 188/367 (51%), Positives = 245/367 (66%), Gaps = 49/367 (13%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDH----------------WKVEKFDPFWNEG 44
M ++ E V+K H K KPWD D +IDH WKV+ F P N+
Sbjct: 1 MSDSGEPVVSKNKA--HRKDKPWDTD-DIDHVSYLLPRVGSSRTYWQWKVDPFQPTDNKA 57
Query: 45 GML-EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPY 103
G E SSF+TLFP+YREKYL+E W V AL +GV+C L+LV GSM+V TTRKT DPY
Sbjct: 58 GAFTEESSFATLFPKYREKYLREVWSAVTRALDTHGVACTLDLVHGSMSVKTTRKTYDPY 117
Query: 104 IIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSST 163
II+KARD+I+LL+R V QA+KILDD + CDIIKIG LVRNKERFVKRRQ ++GP+ ST
Sbjct: 118 IILKARDMIKLLARGVAVSQAVKILDDAVACDIIKIGTLVRNKERFVKRRQRIIGPDGST 177
Query: 164 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEK 223
LKA+E+LT CY+LVQG+TV+ MG +K LK+VRRIV DCM+N +HP+Y IK LM+++EL K
Sbjct: 178 LKAIELLTNCYVLVQGSTVSVMGPYKSLKEVRRIVLDCMKN-IHPIYRIKELMIRRELAK 236
Query: 224 DPALANENWDRFLPKFKKKNVK--QKKVKSKE--------------------------KK 255
DP LA E+WDRFLP+F+K+++K +K K E KK
Sbjct: 237 DPKLATESWDRFLPQFRKRHLKTSEKTAKKNEKLEGKKEAWKAAGMGAEEIAKKEKPAKK 296
Query: 256 PYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP 315
YTPFPP QP K+D LESGEYFL ++E+++ +++++KQAE T + + +R AFI P
Sbjct: 297 VYTPFPPAQQPRKVDLQLESGEYFLKATEREAQETEKRKQKQAETTEKRRAERAEAFIAP 356
Query: 316 EEPSRQN 322
E + Q
Sbjct: 357 VEKAEQT 363
>gi|346472733|gb|AEO36211.1| hypothetical protein [Amblyomma maculatum]
Length = 349
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 226/279 (81%), Gaps = 3/279 (1%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G+L S+F+TLFP+YREKYL+E WP+VK L E+G++ EL+++EGSMTV+TTRK D
Sbjct: 30 NPHGVLCESAFATLFPKYREKYLRECWPLVKKTLAEHGITAELDVIEGSMTVTTTRKMWD 89
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+LLSRSVP QAI++L+D++ CDI+KIG LVRN+ERFVKRRQ L+GPN
Sbjct: 90 PYIILKARDMIKLLSRSVPYEQAIRVLEDDVGCDIVKIGRLVRNRERFVKRRQRLIGPNG 149
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
+TLKA+E+LT CY+LVQGNTV+A+G +KGL+ VR+IVED M+N +HPVY+IK LM+K+EL
Sbjct: 150 TTLKAIELLTNCYVLVQGNTVSALGPYKGLQHVRKIVEDTMKN-IHPVYNIKALMIKREL 208
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKK--VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 279
KDP L NENWDRFLP FK + + ++K K + K YTPFPPP SK+DK L SGEYF
Sbjct: 209 AKDPNLRNENWDRFLPHFKAQTLSKRKKPKKQRTKGEYTPFPPPQPESKMDKELASGEYF 268
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP 318
L E ++++KK QEKQ+ +AE + + +R+ +F PP+EP
Sbjct: 269 LKEHERKAKKAQEKQQAKAEAEVKRQERRNKSFQPPQEP 307
>gi|403214636|emb|CCK69136.1| hypothetical protein KNAG_0C00230 [Kazachstania naganishii CBS
8797]
Length = 349
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 183/305 (60%), Positives = 231/305 (75%), Gaps = 6/305 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD D +ID W +E+F P N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNKDKPWDTD-DIDKWHIEEFKPEDNASGQPFAEESSFMTLFPKYRETYLKSVWKDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL ++ C
Sbjct: 64 LDSHHIACTLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQEDTAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN+V NKERFVKRRQ LVGP+ +TLKALE+LT CYILVQGNTV+AMG +KGLK++
Sbjct: 124 DVIKIGNIVTNKERFVKRRQRLVGPDGNTLKALELLTKCYILVQGNTVSAMGPYKGLKEL 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K +K
Sbjct: 184 RRVVEDCMHN-VHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKIKK 242
Query: 255 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+ YTPFPP P K+D +ESGEYFL++++K+ KK +E++E QAEK +R +
Sbjct: 243 EKKVYTPFPPAQLPRKVDLEIESGEYFLNKKEKQFKKLEERKEIQAEKQRVKDEERRKDY 302
Query: 313 IPPEE 317
P+E
Sbjct: 303 TAPKE 307
>gi|367033049|ref|XP_003665807.1| hypothetical protein MYCTH_2309871 [Myceliophthora thermophila ATCC
42464]
gi|347013079|gb|AEO60562.1| hypothetical protein MYCTH_2309871 [Myceliophthora thermophila ATCC
42464]
Length = 320
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 184/305 (60%), Positives = 235/305 (77%), Gaps = 6/305 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D +ID WK+E F + G LE SSF TLFP+YRE+YL++AWP+V AL+
Sbjct: 5 HKKDKPWDTD-DIDKWKIEPFTKEQSSGPFLEESSFMTLFPKYRERYLKDAWPLVTKALE 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 64 KHGIAATLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
IKI NLVRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG +KGLK+VRR
Sbjct: 124 IKIRNLVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPYKGLKEVRR 183
Query: 197 IVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 252
+VED M+N +HP+Y IK LM+K+EL KDPALA+E+W R+LP FKK+ + ++ K+ K
Sbjct: 184 VVEDTMRN-IHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRKPYKITDK 242
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
KKPYTPFPP P+ SK+D +E+GEYFLS+ K+ E+ EK +K E KR+R+ +
Sbjct: 243 SKKPYTPFPPAPEKSKVDMQIETGEYFLSKEAKQRAAEAERAEKAKQKKEEKKREREREY 302
Query: 313 IPPEE 317
+PPEE
Sbjct: 303 VPPEE 307
>gi|408398153|gb|EKJ77287.1| hypothetical protein FPSE_02562 [Fusarium pseudograminearum CS3096]
Length = 320
Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 178/306 (58%), Positives = 230/306 (75%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD + +ID W++E F P N G E SSF LFP+YRE L+E+WP+V AL
Sbjct: 5 HNVAKPWDTE-DIDKWRIEPFTPKDNLAGPFTEESSFQVLFPRYRESALKESWPLVTRAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+LVEG+MTV T+ KT DP I+KARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 64 EKLGIACTLDLVEGAMTVKTSLKTSDPSAILKARDLIKLLARSVPAPQALKILEDGIACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLV + ++FVKRRQ L+G N +TLK LE+LT YILV GNTV+AMG +KGLK++R
Sbjct: 124 IIKIRNLVGSAQKFVKRRQRLLGHNGATLKTLELLTKTYILVHGNTVSAMGPYKGLKEIR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCM N +HP+YHIK M+K+EL KDP LANE+WDRFLP FK K + Q+ KV
Sbjct: 184 RVVEDCMVN-IHPIYHIKEAMIKQELAKDPKLANESWDRFLPNFKSKALSQRRVPHKVND 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP P+ SK+DK +ESGEYFL + KE +E++EKQ ++ E ++R+A
Sbjct: 243 KAKKVYTPFPPAPEKSKVDKQIESGEYFLGKVGKERAAQEERREKQNKRKEEKAKEREAD 302
Query: 312 FIPPEE 317
FI PEE
Sbjct: 303 FIAPEE 308
>gi|451998791|gb|EMD91254.1| hypothetical protein COCHEDRAFT_1135572 [Cochliobolus
heterostrophus C5]
Length = 344
Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 186/304 (61%), Positives = 232/304 (76%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD D +ID WK+E F P N+ G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HNVDKPWDTD-DIDKWKIEPFKPEDNKAGAFTDESRFSTLFPKYREQYLKGSWKFITQAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQAIKIL+D++ D
Sbjct: 64 QRLGIGCELNLVEGSMTVWTTQKTYDPAAILNARDLIKLLARSVPAPQAIKILEDDVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT CY+LVQGNTVA MG +KGLKQVR
Sbjct: 124 IIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTECYLLVQGNTVACMGPYKGLKQVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI+ED M N +HP+Y IK LM+KKEL KDP LANE+WDRFLP FKK+++ ++ KV
Sbjct: 184 RIIEDTMHN-IHPIYAIKELMIKKELAKDPELANESWDRFLPNFKKRSLSKRRIPHKVND 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KKPYTPFPPP + SK+D +ESGEYFL + KE K +E++EK EK +++R A
Sbjct: 243 KSKKPYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKAQEEREEKMKEKMDAKRKERMAE 302
Query: 312 FIPP 315
++ P
Sbjct: 303 YVAP 306
>gi|294898650|ref|XP_002776320.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
gi|239883230|gb|EER08136.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
Length = 337
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 187/313 (59%), Positives = 229/313 (73%), Gaps = 3/313 (0%)
Query: 11 KKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
K K K+ + KPWD + IDHWK E F N G+LE SSF+TLFPQYRE YL++ WP
Sbjct: 25 KTKKNKYRRDKPWDHE-GIDHWKYESFAKEDNPSGLLEESSFATLFPQYRENYLKQVWPD 83
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
VK L + + ELNLVEGSMTV TTRKT DPY I++ARDLI+LL+RSVP PQA KI+DD
Sbjct: 84 VKQVLAPFEIKAELNLVEGSMTVRTTRKTWDPYAIIRARDLIKLLARSVPLPQAKKIMDD 143
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 190
M CDIIK G LVRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQG TV AMG+ K
Sbjct: 144 NMFCDIIKTGGLVRNKEKFVKRRQRLVGPNGSTLKAIELLTQCYVLVQGQTVVAMGTHKA 203
Query: 191 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 250
LKQVRRIVEDC N +HPVYH+K LM+KKELEK+ L +ENWDRFLP FK +NV++KK K
Sbjct: 204 LKQVRRIVEDCFHN-VHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNVQRKKQK 262
Query: 251 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 310
KK FPP P K D +E+GEYFLS+ +K S + +K+E Q + + + KR+R+
Sbjct: 263 KIAKKSKELFPPEQLPRKEDIQIETGEYFLSKDQKHSNEMTKKREHQKQVSEQRKREREE 322
Query: 311 AFI-PPEEPSRQN 322
+ PP E R++
Sbjct: 323 MYSQPPPEKIRKS 335
>gi|50557280|ref|XP_506048.1| 90S preribosome/SSU processome component KRR1 [Yarrowia lipolytica
CLIB122]
gi|49651918|emb|CAG78861.1| YALI0F30393p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 174/303 (57%), Positives = 228/303 (75%), Gaps = 4/303 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H+K KPWD+ P+ID W ++F N G+ E SSF+TLFP+YRE YL+E W V A
Sbjct: 5 HNKDKPWDQ-PHIDKWAEDEFTEKDNASGLPFAEESSFATLFPKYREGYLKEIWDDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KIL+D + C
Sbjct: 64 LDQKGIACVLDLVEGSMTVKTTRKTYDPYAIMNARDLIKLLARSVPFPQAVKILEDGIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN NKERFVKRRQ L+GPN +TLKALE+LT CYILVQGNTV+ MG + +K +
Sbjct: 124 DVIKIGNFTSNKERFVKRRQRLLGPNGNTLKALELLTQCYILVQGNTVSVMGPYTHMKTL 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR++EDCM N +HP+YHIK LM+K+EL K P LA E+W RFLP+FKK+NV +KK K+ +
Sbjct: 184 RRVIEDCMMN-IHPIYHIKELMIKRELAKRPELAEEDWSRFLPQFKKRNVARKKPKTIKN 242
Query: 255 KPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIP 314
K T FPP P K+D +ESGE+FL +K + +EK+++QA ++AE + +R+ AFI
Sbjct: 243 KVRTAFPPAQLPRKVDLQIESGEFFLGADEKRRRADEEKRQQQAARSAEKQAQRELAFIA 302
Query: 315 PEE 317
P+E
Sbjct: 303 PDE 305
>gi|452979973|gb|EME79735.1| hypothetical protein MYCFIDRAFT_156958 [Pseudocercospora fijiensis
CIRAD86]
Length = 341
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 183/306 (59%), Positives = 231/306 (75%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK E F P N GG E SSF+TLFP+YRE+YL+ +WP + L
Sbjct: 5 YKKDKPWDTD-DIDKWKEEAFTPDQNAGGTFSEESSFATLFPKYREQYLKSSWPTITKQL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP PQA+KIL+D M CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPTPQALKILEDGMACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI +VRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+ MG +K LK+VR
Sbjct: 124 VIKIRGMVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSVMGGYKNLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKS 251
R+VEDCM N +HP+YHIK LM+K+EL KDP L NENW+RFLP FKK+N+ +++ V
Sbjct: 184 RVVEDCMAN-IHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLAKRRKPFNVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP + SK+D +ESGEYFL+ KE K + ++E EK E K+KR+ A
Sbjct: 243 KSKKVYTPFPPAQEKSKVDLQIESGEYFLNNAAKERAKKERREEAMKEKMEERKKKREEA 302
Query: 312 FIPPEE 317
F P+E
Sbjct: 303 FEAPQE 308
>gi|453082814|gb|EMF10861.1| eukaryotic type KH-domain (KH-domain type I) [Mycosphaerella
populorum SO2202]
Length = 342
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 177/304 (58%), Positives = 227/304 (74%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+ KPWD D +ID WK E F N GG E S+FSTLFP+YRE YL+ WP + AL
Sbjct: 5 HNVDKPWDTD-DIDKWKEEPFTADQNLGGTFSEESTFSTLFPKYRELYLKTHWPRITKAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++ G++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVP +A+KIL+D + CD
Sbjct: 64 EKTGIACSLDLIEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPLDEAMKILEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI +VRNKERFVKRRQ ++GPN STLKAL +LT YILVQGNTV+ MG +K LK+VR
Sbjct: 124 VIKIRGMVRNKERFVKRRQRILGPNGSTLKALSLLTQTYILVQGNTVSIMGGYKNLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R+VEDCMQN +HP+YHIK LM+K+EL KDP L NENW+RFLP FKK+N+ ++ KV
Sbjct: 184 RVVEDCMQN-IHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLSKRRVPFKVND 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K K+ YTPFPPP + SK+D +ESGEYFL++ K+ K + +++ +K E KRKR+ A
Sbjct: 243 KAKRVYTPFPPPQEKSKVDLQIESGEYFLNKAAKDRAKKERREDVMKDKMEERKRKREEA 302
Query: 312 FIPP 315
F P
Sbjct: 303 FDAP 306
>gi|156382113|ref|XP_001632399.1| predicted protein [Nematostella vectensis]
gi|156219454|gb|EDO40336.1| predicted protein [Nematostella vectensis]
Length = 304
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 182/300 (60%), Positives = 240/300 (80%), Gaps = 2/300 (0%)
Query: 23 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSC 82
WD + IDHW+V+KF N G++E SSF+TLFP+YREKYL+E WP+V+ LKE+ + C
Sbjct: 1 WDHE-GIDHWRVDKFSADDNPYGVVEESSFATLFPKYREKYLKEVWPLVEKELKEHNLKC 59
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNL 142
+L+L+EGSMTV TTRKT DPYII+KARD+I+L++RSV QA +IL+DE+ CDIIKI +L
Sbjct: 60 QLDLIEGSMTVFTTRKTFDPYIIIKARDMIKLMARSVQFEQAKRILEDEVACDIIKIASL 119
Query: 143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM 202
VRNKERFVKRRQ L+GPN +TLKALE+LT CYI+VQGNTV+A+G +KGLKQVR++VE+ M
Sbjct: 120 VRNKERFVKRRQRLIGPNCATLKALELLTECYIMVQGNTVSALGPYKGLKQVRKVVEETM 179
Query: 203 QNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPP 262
+N +HP+Y+IK LM+K+EL KDP L NE+WDRFLPKF+KK VK+KK K KK YTPFPP
Sbjct: 180 KN-VHPIYNIKTLMIKRELAKDPDLKNESWDRFLPKFRKKAVKKKKKVPKTKKEYTPFPP 238
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 322
P SK+DK L SGEYFL E++++++ E++++QA + K R+ A+IPP E +N
Sbjct: 239 PQPESKMDKELASGEYFLKEKERKAQAQHERKQRQAAAAEKRKVTREQAYIPPVETVPKN 298
>gi|403339159|gb|EJY68829.1| Ribosomal RNA assembly protein, putative [Oxytricha trifallax]
gi|403343284|gb|EJY70967.1| Ribosomal RNA assembly protein, putative [Oxytricha trifallax]
Length = 383
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 182/312 (58%), Positives = 236/312 (75%), Gaps = 5/312 (1%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
K+ K KPWD DP +D WKV++F P N G+LE SSF+ LFPQYREKY++E WP+VK AL
Sbjct: 29 KYRKEKPWDNDPTLDKWKVDQFKPEDNPSGVLEESSFAVLFPQYREKYIKEVWPLVKKAL 88
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQC 134
++ + EL+L+EGSMTV TT++T DPY I+KARDLI+LL+RSVP QA+KIL DD M C
Sbjct: 89 SKFKIIGELDLIEGSMTVKTTKQTWDPYSIIKARDLIKLLARSVPYQQAVKILEDDNMFC 148
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
DIIKIG LVRNKE+FVKRRQ L+GPN TLKALE+LT CYILVQGNTV++MG F+ LK V
Sbjct: 149 DIIKIGGLVRNKEKFVKRRQRLIGPNGMTLKALELLTNCYILVQGNTVSSMGYFRELKSV 208
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RRIV D M+N HP+Y+IK LM+K+EL K+P +A ENWDRFLP FKK+NVK+K+ K K
Sbjct: 209 RRIVLDTMRN-THPIYNIKELMIKRELAKNPEMAGENWDRFLPHFKKQNVKRKQKKIDTK 267
Query: 255 KP---YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K YTPFPP Q K D + +GEYFLSE+ K++ ++++K+ + +K E +++
Sbjct: 268 KKGDNYTPFPPEQQLRKEDYQMMTGEYFLSEQAKKNIEFEKKRGIKEQKKQEKIDQKNKQ 327
Query: 312 FIPPEEPSRQNS 323
F+ P+E + S
Sbjct: 328 FVAPDEDQEKES 339
>gi|452836496|gb|EME38440.1| hypothetical protein DOTSEDRAFT_92479 [Dothistroma septosporum
NZE10]
Length = 349
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 184/311 (59%), Positives = 234/311 (75%), Gaps = 11/311 (3%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFD----PFWNEGGML-EVSSFSTLFPQYREKYLQEAWPM 70
K++ K WD + +ID W EK+D P N GG E SSF+TLFP+YRE YL+ +WPM
Sbjct: 6 KNNDAKTWDTE-DIDKWDSEKYDAPLKPAENLGGTFSEESSFATLFPKYREAYLKASWPM 64
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
+ AL+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LLSRSVPAPQAIKIL+D
Sbjct: 65 ITRALEKHGIACTLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLSRSVPAPQAIKILED 124
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 190
CD+IKI LVRNK+RFVKRRQ ++GPN STLKALE+LT YILVQGNTV+ MG +K
Sbjct: 125 GTACDVIKIRGLVRNKDRFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSVMGGYKS 184
Query: 191 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-- 248
LK+VRR+VEDCM N +HP+YHIK LM+K+EL KDP L NENW+RFLP FKK+N+ +++
Sbjct: 185 LKEVRRVVEDCMAN-IHPIYHIKELMIKRELAKDPELKNENWERFLPHFKKRNLSKRRVP 243
Query: 249 --VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 306
V K KK YTPFPPP + SK+D +ESGEYFL+ KE +++++ EK E K+
Sbjct: 244 RVVNDKSKKVYTPFPPPQEQSKVDLQIESGEYFLNNAAKERATKEKREDAMKEKMEERKK 303
Query: 307 KRDAAFIPPEE 317
KR+ AF P+E
Sbjct: 304 KREEAFKAPKE 314
>gi|449297121|gb|EMC93139.1| hypothetical protein BAUCODRAFT_36810 [Baudoinia compniacensis UAMH
10762]
Length = 331
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 179/306 (58%), Positives = 234/306 (76%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
+ K KPWD D +ID WK E F P N GG E SSF+TLFP+YRE YL+++WPM+ L
Sbjct: 5 YKKDKPWDTD-DIDKWKEEAFTPDQNAGGTFSEESSFATLFPKYREIYLKQSWPMITRVL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+++G++C L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVP+PQA+KI++D + CD
Sbjct: 64 EKHGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPSPQAVKIMEDGVACD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKI LVRNKERFVKRRQ ++GPN STLKALE+LT YILVQGNTV+ MG++K LK+VR
Sbjct: 124 VIKIRGLVRNKERFVKRRQRILGPNGSTLKALELLTQTYILVQGNTVSVMGAYKSLKEVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
R++EDCM N +HP+YHIK LM+K+EL KDP L NENWDRFLP FKK+N+ ++ KV
Sbjct: 184 RVIEDCMAN-IHPIYHIKELMIKRELAKDPELKNENWDRFLPHFKKRNLSKRRKPFKVVD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPP + SK+D +ESGE+FL+++ KE + ++E K E +++R+ A
Sbjct: 243 KAKKVYTPFPPEREKSKVDLQIESGEFFLNKQAKERAGRERREENMRAKMEERRKRREEA 302
Query: 312 FIPPEE 317
F+ P E
Sbjct: 303 FVAPGE 308
>gi|320583574|gb|EFW97787.1| ribosomal RNA assembly protein mis3 [Ogataea parapolymorpha DL-1]
Length = 356
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 182/309 (58%), Positives = 234/309 (75%), Gaps = 5/309 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
++K KPWD P+ID W + +F P N G LE SSF TLFP+YRE+YL++ W V A
Sbjct: 5 YNKDKPWD-TPDIDKWAIPEFKPEDNASGSPFLEESSFMTLFPKYREEYLRQIWGDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVP PQA+KIL D+ C
Sbjct: 64 LNKHHIACTLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPFPQAVKILQDDTAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
+IIKIGN+V NKERF+KRRQ L+GPN +TLKALE+LTGCY+LVQGNTVA MG KGLK +
Sbjct: 124 EIIKIGNIVANKERFIKRRQRLIGPNGNTLKALELLTGCYMLVQGNTVAVMGPHKGLKVL 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV-KQKKVKSKE 253
RR++EDCM N +HP+YHIK LM+K+EL K P LA E+W RFLP FKK+NV ++K K +E
Sbjct: 184 RRVIEDCMHN-IHPIYHIKELMIKRELAKRPELAEEDWSRFLPNFKKRNVARKKPKKVRE 242
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KK YTPFPP P KID +ESGEYFL +++K +K+ QEK+EKQ E +++R ++
Sbjct: 243 KKEYTPFPPVQTPRKIDLQIESGEYFLGKKEKRAKELQEKREKQEEMKELKEQERAKDYV 302
Query: 314 PPEEPSRQN 322
PEE R+N
Sbjct: 303 APEEDVREN 311
>gi|187469407|gb|AAI67117.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 353
Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 180/313 (57%), Positives = 236/313 (75%), Gaps = 6/313 (1%)
Query: 10 NKKHKGKHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
N K K K + +P +E + D WK + F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 11 NAKGKNKKRQTQPVEESELLTVPDGWKEDPFTKEDNPRGLLEESSFATLFPKYREAYLKE 70
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++
Sbjct: 71 CWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVR 130
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 131 ILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALG 190
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV +
Sbjct: 191 PFSGLKEVRKVVWDTMKN-IHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSK 249
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE +
Sbjct: 250 RKEPKKKSVKKDYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEVKTKQAEAVTKR 309
Query: 305 KRKRDAAFIPPEE 317
+ +R+ AFIPP+E
Sbjct: 310 QEERNKAFIPPKE 322
>gi|301621305|ref|XP_002939993.1| PREDICTED: KRR1 small subunit processome component homolog [Xenopus
(Silurana) tropicalis]
gi|159155304|gb|AAI54861.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 373
Score = 356 bits (914), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 180/313 (57%), Positives = 236/313 (75%), Gaps = 6/313 (1%)
Query: 10 NKKHKGKHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
N K K K + +P +E + D WK + F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 11 NAKGKNKKRQTQPVEESELLTVPDGWKEDPFTKEDNPRGLLEESSFATLFPKYREAYLKE 70
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++
Sbjct: 71 CWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVR 130
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 131 ILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALG 190
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV +
Sbjct: 191 PFSGLKEVRKVVWDTMKN-IHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSK 249
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE +
Sbjct: 250 RKEPKKKSVKKDYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEVKTKQAEAVTKR 309
Query: 305 KRKRDAAFIPPEE 317
+ +R+ AFIPP+E
Sbjct: 310 QEERNKAFIPPKE 322
>gi|154273703|ref|XP_001537703.1| 90S preribosome/SSU processome component KRR1 [Ajellomyces
capsulatus NAm1]
gi|150415311|gb|EDN10664.1| ribosomal RNA assembly protein mis3 [Ajellomyces capsulatus NAm1]
Length = 334
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 180/289 (62%), Positives = 229/289 (79%), Gaps = 6/289 (2%)
Query: 34 VEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
+E+F P N GG E SSF +LFP+YRE YL+E WPM+ AL+++G++C L+LVEGSMT
Sbjct: 3 IEEFKPEHNAGGTFTEESSFVSLFPKYREAYLKETWPMITKALEKHGIACTLDLVEGSMT 62
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DP I+ ARDLI+LL+RSVPAPQA+KIL D++ CDIIKI NLVRNKERFVKR
Sbjct: 63 VKTTRKTFDPASILNARDLIKLLARSVPAPQALKILQDDVACDIIKIRNLVRNKERFVKR 122
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
RQ ++GP+ STLKALE+LT YILVQGNTV+AMG +KGLK++RR+VEDCM N +HP+YHI
Sbjct: 123 RQRILGPSGSTLKALELLTNTYILVQGNTVSAMGPYKGLKEIRRVVEDCMNN-IHPIYHI 181
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSKEKKPYTPFPPPPQPSK 268
K +M+KKEL KDP LANE+WDRFLP FKK+ + ++ KV K KK YTPFPPP + SK
Sbjct: 182 KEMMIKKELAKDPKLANESWDRFLPHFKKRTLSKRRKPFKVTDKSKKVYTPFPPPQEKSK 241
Query: 269 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+D +ESGEYFLS++ +E K +E E+Q EK E K++ + F+PP+E
Sbjct: 242 VDLQIESGEYFLSKQARERAKKEEIIERQKEKREEKKKELEKDFVPPKE 290
>gi|113197682|gb|AAI21623.1| LOC779544 protein [Xenopus (Silurana) tropicalis]
Length = 371
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 180/313 (57%), Positives = 236/313 (75%), Gaps = 6/313 (1%)
Query: 10 NKKHKGKHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
N K K K + +P +E + D WK + F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 9 NAKGKNKKRQTQPVEESELLTVPDGWKEDPFTKEDNPRGLLEESSFATLFPKYREAYLKE 68
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++
Sbjct: 69 CWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVR 128
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 129 ILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALG 188
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV +
Sbjct: 189 PFSGLKEVRKVVWDTMKN-IHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSK 247
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE +
Sbjct: 248 RKEPKKKSVKKDYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEVKTKQAEAVTKR 307
Query: 305 KRKRDAAFIPPEE 317
+ +R+ AFIPP+E
Sbjct: 308 QEERNKAFIPPKE 320
>gi|327272856|ref|XP_003221200.1| PREDICTED: KRR1 small subunit processome component homolog [Anolis
carolinensis]
Length = 385
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/290 (58%), Positives = 227/290 (78%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 32 DGWKEPAFKREDNPKGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINAALDLIEG 91
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTVSTT+KT DPYII++ARDLI+LL+RSVP QA++IL+D++ CDIIKIG LVRN+ERF
Sbjct: 92 SMTVSTTKKTFDPYIIIRARDLIKLLARSVPFEQAVRILEDDVACDIIKIGTLVRNRERF 151
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
+KRRQ L+GPN STLKALE+LT CYILVQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 152 IKRRQRLIGPNGSTLKALELLTSCYILVQGNTVSALGPFNGLKEVRKVVLDTMKN-IHPI 210
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KDP L +NW+RFLPKFK KN+ ++K K+ YTPFPPP S
Sbjct: 211 YNIKTLMIKRELSKDPELRAQNWERFLPKFKHKNLNKRKEPKKKNVKKEYTPFPPPQPES 270
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
++DK L SGE+FL E +K+ K+ +E + KQA ++ + +R+ AFIPP+E
Sbjct: 271 QVDKELASGEFFLKESQKKRKRVEEIKAKQAAAISKRQEERNKAFIPPKE 320
>gi|148223443|ref|NP_001084288.1| KRR1, small subunit (SSU) processome component, homolog [Xenopus
laevis]
gi|47937628|gb|AAH72210.1| HRB2 protein [Xenopus laevis]
Length = 372
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/290 (60%), Positives = 225/290 (77%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK E F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL + V EL+L+EG
Sbjct: 33 DGWKEEPFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNDSFVKAELDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++IL D+M CDIIKIG+LVRN+ERF
Sbjct: 93 SMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGSLVRNRERF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 153 IKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFGGLKEVRKVVSDTMKN-IHPI 211
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--KVKSKEKKPYTPFPPPPQPS 267
Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV ++ K KK YTPFPPP S
Sbjct: 212 YNIKALMIKRELAKDPELRSKSWERFLPQFKHKNVSKRKEPKKKNVKKAYTPFPPPQPES 271
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+IDK L SGE+FL E K KK +E + KQAE + + +R+ AFIPP+E
Sbjct: 272 QIDKELASGEFFLKESHKRRKKLEEVKAKQAEAVTKRQEERNKAFIPPKE 321
>gi|212543807|ref|XP_002152058.1| 90S preribosome/SSU processome component KRR1 [Talaromyces
marneffei ATCC 18224]
gi|210066965|gb|EEA21058.1| rRNA assembly protein Mis3, putative [Talaromyces marneffei ATCC
18224]
Length = 309
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 172/268 (64%), Positives = 212/268 (79%), Gaps = 5/268 (1%)
Query: 54 TLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIR 113
TLFP+YRE YL+EAWP++ L++ G++C L+LVEGSMTV TTRKT DP I+ ARDLI+
Sbjct: 2 TLFPKYREVYLKEAWPLITRTLEKQGIACTLDLVEGSMTVKTTRKTFDPAAILNARDLIK 61
Query: 114 LLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC 173
LL+RSVP QA+KIL+D + CDIIKI NLV NKERFVKRRQ ++GPN STLKALE+LT
Sbjct: 62 LLARSVPVQQALKILEDGVACDIIKIRNLVNNKERFVKRRQRILGPNGSTLKALELLTST 121
Query: 174 YILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWD 233
YILVQGNTV+AMG FKGLK+VRR++EDCM N +HP+YHIK LM+K+EL KDP LA E+WD
Sbjct: 122 YILVQGNTVSAMGPFKGLKEVRRVIEDCMAN-IHPIYHIKELMIKRELAKDPTLATESWD 180
Query: 234 RFLPKFKKKNVKQK----KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKK 289
RFLP FKK+ + ++ KV K +K YTPFPPP + SKIDK LESGEYFLS++ KE +
Sbjct: 181 RFLPNFKKRTLSKRRVPHKVTDKSQKAYTPFPPPQEKSKIDKELESGEYFLSKQAKERVR 240
Query: 290 WQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+E QEKQ EK E ++R F+PP E
Sbjct: 241 KEEIQEKQREKREEKMKERQKDFVPPTE 268
>gi|171683573|ref|XP_001906729.1| hypothetical protein [Podospora anserina S mat+]
gi|170941746|emb|CAP67400.1| unnamed protein product [Podospora anserina S mat+]
Length = 413
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 181/310 (58%), Positives = 234/310 (75%), Gaps = 6/310 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D ++D WKV+ F + G LE SSF TLFP+YRE+YL+++WP+V +L+
Sbjct: 98 HKKEKPWDTD-DVDKWKVDPFTKEDSSGAFLEESSFMTLFPKYRERYLKDSWPLVTKSLE 156
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
+YG+ L+L+EGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 157 KYGIDAVLDLIEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 216
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
IKI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG FKGLK+VRR
Sbjct: 217 IKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPFKGLKEVRR 276
Query: 197 IVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSK 252
+VED MQN +HP+Y IK LM+K+EL KDPALA E+W R+LP FKK+ + ++ V K
Sbjct: 277 VVEDTMQN-VHPIYLIKELMIKRELAKDPALAQEDWSRYLPNFKKRTLSKRHKPHVVTDK 335
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
KK YTPFPP P+ SK+D +ESGEYFL + K+ QE+ EK +K E KR+R+ +
Sbjct: 336 SKKTYTPFPPAPEKSKVDLQIESGEYFLGKEAKQRMAEQERAEKSKQKKEEKKREREKEY 395
Query: 313 IPPEEPSRQN 322
+PPEE + ++
Sbjct: 396 VPPEESASKS 405
>gi|358055242|dbj|GAA98750.1| hypothetical protein E5Q_05438 [Mixia osmundae IAM 14324]
Length = 355
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 188/333 (56%), Positives = 231/333 (69%), Gaps = 33/333 (9%)
Query: 16 KHDKPKPWDEDPNIDH--WKVEKFDPFWNEGG---MLEVSSFSTLFPQYREKYLQEAWPM 70
KH K KPWD + +IDH W V KF+ + LE SSFSTLFP+YRE YL+E W
Sbjct: 25 KHRKDKPWDTE-DIDHLQWAVAKFEAPASTSDHKPFLEESSFSTLFPKYREVYLREVWAG 83
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
V L ++G+ C L+LVEGSMTV TTRKT DPYII+KARDLI+LL+RSVP PQAIKILDD
Sbjct: 84 VTSQLDKHGIGCTLDLVEGSMTVRTTRKTFDPYIILKARDLIKLLARSVPFPQAIKILDD 143
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 190
+ CDIIKIGN+VRNKERFVKRRQ ++GP STLKALE+LT CYILVQGNTVAAMG +KG
Sbjct: 144 SVACDIIKIGNIVRNKERFVKRRQRILGPGGSTLKALELLTNCYILVQGNTVAAMGPYKG 203
Query: 191 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF-KKKNVKQKKV 249
LK+VRR+V DC+ N +HP+YHIK +M+K+EL KDP LA E+W RFLP+F K+K K+ +V
Sbjct: 204 LKEVRRVVLDCLAN-VHPIYHIKEMMIKRELAKDPKLAEEDWSRFLPQFTKRKQKKRAEV 262
Query: 250 K-------SKEKKP------------------YTPFPPPPQPSKIDKLLESGEYFLSERK 284
+ E+ P YTPFPP QP KID LESGEYFL ++
Sbjct: 263 RPNGEGGNGYEEHPLESAAGKAPKKPKIIKKPYTPFPPAQQPRKIDLQLESGEYFLKPKE 322
Query: 285 KESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
++ K E +++ A+ K KR AF+ P E
Sbjct: 323 QKQKSKDELSKREEAARAQRKAKRAEAFVAPPE 355
>gi|367012591|ref|XP_003680796.1| 90S preribosome/SSU processome component KRR1 [Torulaspora
delbrueckii]
gi|359748455|emb|CCE91585.1| hypothetical protein TDEL_0C06960 [Torulaspora delbrueckii]
Length = 350
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 188/315 (59%), Positives = 239/315 (75%), Gaps = 6/315 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD + +ID W+VE+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTE-DIDKWQVEEFKPEDNASGLPFAEESSFMTLFPKYREPYLKSIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L + ++C L+L+EGSMTV TTRKT DP II++ARDLI+LL+RSVP QA+KIL++++ C
Sbjct: 64 LNAHHIACVLDLMEGSMTVKTTRKTFDPAIILRARDLIKLLARSVPFAQAVKILEEDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN+V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+ MG +KGLK+V
Sbjct: 124 DVIKIGNVVANKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSVMGPYKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK--SK 252
RR+VED M+N +HP+Y IK LM+K+EL K P LA E+W RFLP FKK+NV +KK K
Sbjct: 184 RRVVEDTMRN-VHPIYQIKELMIKRELAKRPELAEEDWSRFLPMFKKRNVARKKPKKIRA 242
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
EKK YTPFPP QP KID +ESGEYFLS+++KE K +E++EKQAEK E + R +
Sbjct: 243 EKKVYTPFPPAQQPRKIDLEIESGEYFLSKKEKEINKLKERREKQAEKQEEKEEARSKDY 302
Query: 313 IPPEEPSRQNSCEAE 327
I P+E ++S E E
Sbjct: 303 IAPKEDVYKSSLEPE 317
>gi|448082190|ref|XP_004195077.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
gi|359376499|emb|CCE87081.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
Length = 364
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 177/314 (56%), Positives = 237/314 (75%), Gaps = 6/314 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
+++ KPWD D +ID W ++F N G+ E S+F TLFP+YRE+YL++ W V
Sbjct: 5 YNRDKPWDTD-DIDKWHTDEFKEEDNASGLPFAEESTFMTLFPKYREQYLRQIWGDVTRE 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + C+L+LVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LSKHHIDCQLDLVEGSMTVKTTRKTYDPAMILKARDLIKLLARSVPFPQAVKILQDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D++KIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CY+LVQG+TV+AMG +KGLK V
Sbjct: 124 DVVKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYVLVQGSTVSAMGPYKGLKVV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM N +HP+YHIK LM+K+EL +P LA+E+W RFLP+FKK+NV +KK+K +K
Sbjct: 184 RRVVEDCMNN-IHPIYHIKELMLKQELASNPDLAHEDWSRFLPQFKKRNVARKKLKQSKK 242
Query: 255 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+ YTPFPPP QP K+D +ESGEYFL ++++ +K +EK+E Q E + K+ R F
Sbjct: 243 EKKVYTPFPPPQQPRKVDLQMESGEYFLGKKERSAKALEEKREHQKEASETRKQDRMKDF 302
Query: 313 IPPEEPSRQNSCEA 326
PEE + +N A
Sbjct: 303 EAPEEETYKNELVA 316
>gi|85106412|ref|XP_962180.1| 90S preribosome/SSU processome component KRR1 [Neurospora crassa
OR74A]
gi|28923778|gb|EAA32944.1| ribosomal RNA assembly protein mis3 [Neurospora crassa OR74A]
gi|336471628|gb|EGO59789.1| ribosomal RNA assembly protein mis3 [Neurospora tetrasperma FGSC
2508]
gi|350292741|gb|EGZ73936.1| ribosomal RNA assembly protein mis3 [Neurospora tetrasperma FGSC
2509]
Length = 320
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 181/305 (59%), Positives = 232/305 (76%), Gaps = 6/305 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D +ID WKV+ F + G LE SSF TLFP+YRE+YL+++WP++ AL
Sbjct: 5 HKKEKPWDTD-DIDKWKVDPFTKDESSGPFLEESSFMTLFPKYRERYLRDSWPLITKALD 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 64 KHGITAVLDLVEGSMTVKTTRKTYDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
IKI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG FKGLK+VRR
Sbjct: 124 IKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPFKGLKEVRR 183
Query: 197 IVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSK 252
+VED M N +HP+Y IK LM+K+EL KDPALA+E+W R+LP FKK+ + +++ V K
Sbjct: 184 VVEDTMNN-VHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRVPHVVNDK 242
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
KK YTPFPP P+ SK+D +ESGEYFL + K+ QE+ EK +K E KR+R+ +
Sbjct: 243 TKKNYTPFPPAPEKSKVDLQIESGEYFLGKEAKQRVAEQERAEKAKQKKEEKKREREKEY 302
Query: 313 IPPEE 317
+PPEE
Sbjct: 303 VPPEE 307
>gi|167533103|ref|XP_001748232.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773352|gb|EDQ86993.1| predicted protein [Monosiga brevicollis MX1]
Length = 1010
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 191/325 (58%), Positives = 244/325 (75%), Gaps = 7/325 (2%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++ K KPWD + IDHWK+E F +G M++ +SF TLFP+YRE+YL+E W + L
Sbjct: 651 RYRKDKPWDHE-GIDHWKIEPFTEEMGQGLMVDETSFCTLFPKYREQYLREHWSRITSEL 709
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
K ++CEL+L+EGSMTV TTRKT DPYII+KARDLI+LL+RSVP AIKIL D++ CD
Sbjct: 710 KRLHIACELDLIEGSMTVRTTRKTWDPYIILKARDLIKLLARSVPFEHAIKILQDDVACD 769
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI LVRNKERFVKRRQ L+GPN +TLKA+E+LT CYILVQGNTVA MG FKGLKQ R
Sbjct: 770 IIKINGLVRNKERFVKRRQRLIGPNGATLKAIELLTECYILVQGNTVACMGPFKGLKQAR 829
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 255
R+V DCM N +HPVY+IK +M+K+EL + AL +WDRFLPKFK N+K+KK K K+K+
Sbjct: 830 RVVLDCMNN-IHPVYNIKAMMIKRELMANDALKEASWDRFLPKFKTSNIKRKKPKFKKKE 888
Query: 256 PYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP 315
YTPFPP PQPSK D +LESGEYFL ++++ Q+K+++ A+K A N+ KR +A+ P
Sbjct: 889 -YTPFPPAPQPSKKDLMLESGEYFLKPEERQAALTQKKKDQAAQKAAANQAKRQSAYETP 947
Query: 316 EE---PSRQNSCEA-EDKTNDVAAM 336
E P+++N A E K DVAA
Sbjct: 948 AEADRPAKRNRASAPESKHVDVAAF 972
>gi|260786115|ref|XP_002588104.1| hypothetical protein BRAFLDRAFT_124941 [Branchiostoma floridae]
gi|229273262|gb|EEN44115.1| hypothetical protein BRAFLDRAFT_124941 [Branchiostoma floridae]
Length = 370
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 180/323 (55%), Positives = 244/323 (75%), Gaps = 10/323 (3%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WK F N GMLE SSF+TLFP+YRE+YL+E WP+VK L E+GV L+++EGSM
Sbjct: 27 WKEPGFSKEDNPHGMLEESSFATLFPKYREQYLRECWPLVKKKLAEFGVRAVLDVIEGSM 86
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV+TTRKT DP+I+++ARDLI+LL+RSVP QA++ILDD++ CDIIKIG +VRNKERFVK
Sbjct: 87 TVATTRKTWDPFIVIRARDLIKLLARSVPYEQAVRILDDDVFCDIIKIGGMVRNKERFVK 146
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RRQ L+GPN TLKA+E+LT CY+LVQGNTVAA+G+ KGL+ VR+IV D M+N +HPVY+
Sbjct: 147 RRQRLIGPNGQTLKAVELLTQCYVLVQGNTVAAIGTHKGLRDVRKIVVDTMKN-IHPVYN 205
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK--VKSKEKKPYTPFPPPPQPSKI 269
IK +M+K+EL KDP L NE+WDRFLPKF+ K + ++K K +EKK YTPFPPP SK+
Sbjct: 206 IKAMMIKRELAKDPVLKNESWDRFLPKFQHKQLSKRKQPFKKREKKEYTPFPPPQPQSKV 265
Query: 270 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ------NS 323
D+ L +GE+F+ E++K+ +K Q++Q ++ E + +R+ AFIPPEEP+ + +S
Sbjct: 266 DQELATGEFFMKEKEKKQRKRQQQQVREVEAKKAQQERRNKAFIPPEEPAHKVKAHSTSS 325
Query: 324 CEAEDKTNDVAAMAKSLKEKAKK 346
E+ K DV A+ + + KK
Sbjct: 326 AESNSKV-DVEALKRKINRSGKK 347
>gi|344304899|gb|EGW35131.1| hypothetical protein SPAPADRAFT_58320 [Spathaspora passalidarum
NRRL Y-27907]
Length = 351
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 185/310 (59%), Positives = 235/310 (75%), Gaps = 6/310 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W +++F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWVIDEFKPEDNASGLHFAEESSFMTLFPKYREEYLRNIWSQVTQA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ + CELNL+EGSMTV TT KT DP +I+KARDLI+LL+RSVP QA+KIL D++ C
Sbjct: 64 LDKHFIKCELNLIEGSMTVKTTPKTFDPAMILKARDLIKLLARSVPFGQAVKILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVNNKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM+N +HP+Y+IK LM+K+EL K P LANE+W RFLP FKK+NV +KK K K
Sbjct: 184 RRVVEDCMRN-IHPIYYIKELMIKQELSKKPELANEDWSRFLPSFKKRNVVRKKKKMANK 242
Query: 255 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+ YTPFPP QP KID +ESGEYFL ++++E KK QEK++KQ E + K++R F
Sbjct: 243 EKKVYTPFPPAQQPRKIDLQIESGEYFLGKKERELKKLQEKRDKQEEVSESRKQERMKDF 302
Query: 313 IPPEEPSRQN 322
P E +N
Sbjct: 303 EAPTEEKHEN 312
>gi|156550594|ref|XP_001604019.1| PREDICTED: KRR1 small subunit processome component homolog [Nasonia
vitripennis]
Length = 339
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 173/287 (60%), Positives = 225/287 (78%), Gaps = 3/287 (1%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F P N +LE SSF+TLFP+YREKYL+E WP+V+ AL E+ V EL+L+EGSMT
Sbjct: 22 KIPEFKPEDNPNRLLEESSFATLFPKYREKYLRECWPLVQKALSEHHVKAELDLIEGSMT 81
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V +TRKT DPYII+KARD+I+L+SRSVP QA+++L D++ DIIKI + VRNKE+FVKR
Sbjct: 82 VKSTRKTWDPYIIIKARDMIKLMSRSVPFEQAVRVLQDDIGADIIKISSFVRNKEKFVKR 141
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
RQ L+GPN TLK++E+LT CY+LVQG TVAA+G +KGL+QVRRI ED M+N +HP+Y+I
Sbjct: 142 RQRLIGPNGCTLKSIELLTNCYVLVQGQTVAALGPYKGLQQVRRIAEDTMKN-IHPIYNI 200
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--KVKSKEKKPYTPFPPPPQPSKID 270
K LM+K+EL KDP L +ENW+RFLPKF KNV ++ KEKKPYTPFPPP Q SKID
Sbjct: 201 KALMIKRELAKDPKLKSENWERFLPKFNSKNVSKRKQPKNKKEKKPYTPFPPPQQESKID 260
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
K L +GEYFL E +K +KK +E++ + E T + + +R AF+PPEE
Sbjct: 261 KQLATGEYFLKEEQKRAKKRKEQEARHEEATKKREERRAQAFVPPEE 307
>gi|384500400|gb|EIE90891.1| ribosomal RNA assembly protein mis3 [Rhizopus delemar RA 99-880]
Length = 290
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 184/291 (63%), Positives = 232/291 (79%), Gaps = 4/291 (1%)
Query: 1 MGENMEKTVNKKHKGKH-DKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQY 59
M E + V ++ K K KPWD D +IDHWKVE+F P + E E SSF+TLFP+Y
Sbjct: 1 MSETGQPEVQQQRNNKRFRKDKPWDTD-DIDHWKVEEFKPEYMEKPFTEESSFATLFPKY 59
Query: 60 REKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 119
RE YL+E WP+V AL+++G++C L+LVEGSMTV TTRK+ DPY I+KARDLI+LL+RSV
Sbjct: 60 REAYLKECWPLVTKALEKWGIACVLDLVEGSMTVKTTRKSWDPYSILKARDLIKLLARSV 119
Query: 120 PAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG 179
P PQAIKI+DD + CDIIKIGN+ RNKERFVKRRQ L+GPN STLKA+E+LT CY+++QG
Sbjct: 120 PFPQAIKIMDDGVACDIIKIGNITRNKERFVKRRQRLIGPNGSTLKAIELLTKCYMMIQG 179
Query: 180 NTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF 239
NTV+AMG +KGLK +RRIV DCM+N +HP+YHIK LM+K+EL KDP LA E+WDRFLPKF
Sbjct: 180 NTVSAMGPYKGLKDLRRIVLDCMKN-IHPIYHIKELMIKRELAKDPKLATESWDRFLPKF 238
Query: 240 KKKNVKQKKVKSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKK 289
KKKN+K KK ++ K YTPFPP P SK+D LESGEYF++++KK+ +K
Sbjct: 239 KKKNIKSKKKVIEKPKKEYTPFPPAPVKSKVDLQLESGEYFMNKQKKKQEK 289
>gi|258577481|ref|XP_002542922.1| ribosomal RNA assembly protein mis3 [Uncinocarpus reesii 1704]
gi|237903188|gb|EEP77589.1| ribosomal RNA assembly protein mis3 [Uncinocarpus reesii 1704]
Length = 368
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 206/389 (52%), Positives = 260/389 (66%), Gaps = 59/389 (15%)
Query: 17 HDKPKPWDEDPNIDHWKV----------------------EKFDPFWNEGGML-EVSSFS 53
H K KPWD D +ID WKV E+F P N G E SSF
Sbjct: 5 HKKEKPWDTD-DIDKWKVRSWPAPCPVWVNVMLTIFTDQIEEFKPDDNVAGTFAEESSFV 63
Query: 54 TLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIR 113
+LFP+YRE YL+E WP++ AL++ G++C L+LVEGSMTV TTRKT DP I+KARDLI+
Sbjct: 64 SLFPKYREVYLKETWPIITRALEKQGIACTLDLVEGSMTVKTTRKTYDPAAILKARDLIK 123
Query: 114 LLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC 173
LL+RSVP PQA+KIL+D + CDIIKI NLVRNKERFVKRRQ ++GP+ STLKALE+LT
Sbjct: 124 LLARSVPTPQALKILEDGVACDIIKIRNLVRNKERFVKRRQRILGPSGSTLKALELLTET 183
Query: 174 YILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWD 233
Y+LVQGNTVAAMG FKGLK+VRR+VEDCM N +HP+YH+K LM+K+EL KDP LANE+WD
Sbjct: 184 YLLVQGNTVAAMGPFKGLKEVRRVVEDCMNN-IHPIYHVKELMIKRELAKDPKLANESWD 242
Query: 234 RFLPKFKKKNVKQKK----VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKK 289
RFLP FKK+ + ++K V K KK YTPFPPP + SK+D +ESGEYFLS++ KE +
Sbjct: 243 RFLPHFKKRTLNKRKQPFKVTDKSKKVYTPFPPPQEKSKVDLQIESGEYFLSKQAKERAR 302
Query: 290 WQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRK 349
+E E+Q +K E ++ D F+PP+E + E+ KK RK
Sbjct: 303 KEEVMERQRQKRDEKMKELDKDFVPPKEDT---------------------GEQKKKKRK 341
Query: 350 QKFAENINPEEYI--AASGEKPSKKKKSK 376
+ PE+ + GEK SKK+KSK
Sbjct: 342 R-------PEDMTDKVSDGEKLSKKRKSK 363
>gi|383847545|ref|XP_003699413.1| PREDICTED: KRR1 small subunit processome component homolog
[Megachile rotundata]
Length = 338
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/304 (58%), Positives = 230/304 (75%), Gaps = 3/304 (0%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
K D+PK N K+ F P N +LE SSF+TLFP+YRE+YL+E WP+V+ AL
Sbjct: 6 KDDEPKVTGPVDNAWSLKIPAFKPEDNPNRLLEESSFATLFPKYREQYLKEHWPLVQKAL 65
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ V EL+LVEGSMTV TTRKT DPYII+KARD+I+L+SRSVP QA+++L D++ D
Sbjct: 66 AEHAVKAELDLVEGSMTVKTTRKTWDPYIIIKARDMIKLMSRSVPFEQAVRVLQDDIGSD 125
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI + VRN+E+FVKRRQ L+GPN TLK++E+LT CY+LVQG TVAA+G +KGL+QVR
Sbjct: 126 IIKISSFVRNREKFVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVAALGPYKGLQQVR 185
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKSKE 253
RIVED M+N +HP+Y+IK LM+K+EL KDP L NENW+RFLP+F KN+ ++ K KE
Sbjct: 186 RIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPRFSSKNISKRKQPKKKKE 244
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
KKPYTPFPPP SKIDK++ SGEYFL E +K +K +E++ + E + + +R AFI
Sbjct: 245 KKPYTPFPPPQTESKIDKMIASGEYFLKEEQKRAKLKKEQEARHQEAEKKRQERRAQAFI 304
Query: 314 PPEE 317
PPEE
Sbjct: 305 PPEE 308
>gi|392593127|gb|EIW82453.1| ribosomal RNA assembly protein mis3, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 355
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/340 (51%), Positives = 241/340 (70%), Gaps = 39/340 (11%)
Query: 29 IDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLV 87
+ WKV+ F+P N+GG+L E SSF+TLFP+YREKYL+E W V AL+ +G++C L+LV
Sbjct: 1 LSQWKVDPFEPTDNKGGVLTEESSFATLFPKYREKYLREVWSAVTRALESHGIACTLDLV 60
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKE 147
GSM+V TTRKT DPY+I+KARDL++LL+R V QA+K+L D++ CDIIKIG+LVRNKE
Sbjct: 61 HGSMSVRTTRKTFDPYVILKARDLVKLLARGVAINQAVKVLQDDVACDIIKIGSLVRNKE 120
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
RFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +K LK+VRRIV DCM+N +H
Sbjct: 121 RFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKSLKEVRRIVLDCMKN-IH 179
Query: 208 PVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK---------QKKVKSKE----- 253
P+Y IK LM+++EL KDP LA E+WDRFLP+F+K+++K + KV +E
Sbjct: 180 PIYRIKELMIRRELAKDPKLATESWDRFLPQFRKRHLKTSEKTARKNEAKVAKEEARKAA 239
Query: 254 --------------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAE 299
KK YTPFPP P K+D LESGEYFL +KE+++ +++++KQ E
Sbjct: 240 GLDPVESSRKDGPSKKTYTPFPPAQMPRKVDLQLESGEYFLKAHEKEAREAEKRKQKQNE 299
Query: 300 KTAENKRKRDAAFIPP-EEPS--------RQNSCEAEDKT 330
KTA + +R F+ P EEP+ ++ EA+D T
Sbjct: 300 KTALRQAERAEVFVAPVEEPAVTADERRKKRRYAEADDVT 339
>gi|389747153|gb|EIM88332.1| ribosomal RNA assembly protein mis3 [Stereum hirsutum FP-91666 SS1]
Length = 405
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 239/349 (68%), Gaps = 32/349 (9%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQY 59
M E+TV + K KPWD D +IDHWKV+ F N+GG E SSF+TLFP+Y
Sbjct: 1 MASEGEETVVVNSNKRFRKEKPWDTD-DIDHWKVDAFTAADNKGGTFAEESSFATLFPKY 59
Query: 60 REKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSV 119
REKYL+EAW V AL +G++C L+L+ GSM+V TTRK DPY+I+KARDLI+LL+R V
Sbjct: 60 REKYLREAWSAVTRALDPHGIACTLDLIHGSMSVRTTRKAFDPYMILKARDLIKLLARGV 119
Query: 120 PAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG 179
QA+KILDD + CDIIKIGNLVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG
Sbjct: 120 AVTQAVKILDDNVACDIIKIGNLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQG 179
Query: 180 NTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF 239
+TV+ MG +K LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLP+F
Sbjct: 180 STVSVMGPYKSLKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPKLATESWDRFLPQF 238
Query: 240 KKKNVKQKK-----------------------------VKSKEKKPYTPFPPPPQPSKID 270
++K++ + + KEKK YTPFPP QP K+D
Sbjct: 239 RRKHLSTSEKTARKNERMETKNDARQAAGLEPDKAPSAMAKKEKKVYTPFPPAQQPRKVD 298
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 319
LESGEYFL +K+ ++ +E+++KQ E T + + +R FI P E +
Sbjct: 299 LQLESGEYFLKPHEKKRREEKERKQKQEETTEKRRAERAEPFIAPVETA 347
>gi|332375012|gb|AEE62647.1| unknown [Dendroctonus ponderosae]
Length = 347
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 179/322 (55%), Positives = 233/322 (72%), Gaps = 4/322 (1%)
Query: 18 DKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKE 77
D KP N K+ F P N GMLE SSF+TLFPQYRE+YL++ WP+V+ L
Sbjct: 8 DDDKPTGPLENAWEMKIPGFKPEHNPHGMLEESSFATLFPQYREQYLKQVWPLVQKTLLA 67
Query: 78 YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDII 137
+ V EL+LVEGSMTV TTRKT DPYII+KARD+I+L++RSVP A ++L+D + DII
Sbjct: 68 HSVKAELDLVEGSMTVKTTRKTWDPYIIIKARDMIKLMARSVPFEHAKRVLEDNVGSDII 127
Query: 138 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 197
KIG + RNKERFVKRRQ L+GPN TL ++E+++ CYILVQGNTVAA+G +KGL+QVR+I
Sbjct: 128 KIGTITRNKERFVKRRQRLIGPNGCTLNSMELISNCYILVQGNTVAAVGPYKGLQQVRKI 187
Query: 198 VEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--KVKSKEKK 255
VED M+N +HP+Y +K L+VKK+L K+P L NENWDRFLPK+ KN+ ++ KEKK
Sbjct: 188 VEDTMRN-IHPMYTLKALLVKKQLLKNPELRNENWDRFLPKYANKNLSKRKQPKNKKEKK 246
Query: 256 PYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP 315
PYTPFPPP K+DK +E+GEYFL++ ++ +KK +E+ EK AE + KR AF+PP
Sbjct: 247 PYTPFPPPQLERKVDKEIETGEYFLNKEQRRAKKKKEQDEKHAEASKRRDEKRSQAFVPP 306
Query: 316 EEPSRQNSCEAEDKTN-DVAAM 336
EEP S E T D+AA+
Sbjct: 307 EEPHASTSKETAASTKVDIAAI 328
>gi|444314297|ref|XP_004177806.1| hypothetical protein TBLA_0A04940 [Tetrapisispora blattae CBS 6284]
gi|387510845|emb|CCH58287.1| hypothetical protein TBLA_0A04940 [Tetrapisispora blattae CBS 6284]
Length = 316
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 191/313 (61%), Positives = 244/313 (77%), Gaps = 6/313 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+I+ W++++F P N G+ E SSF TLFP+YRE YL+E W V +
Sbjct: 5 HNRDKPWDT-PDINKWEIQEFKPEDNASGLPFTEESSFMTLFPKYRETYLREVWGDVTKS 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L +Y V+C L+L+EGSMTV TTRKT DP II+KARDLI+LL+RSVP PQAI+IL D++ C
Sbjct: 64 LDKYHVACTLDLIEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPYPQAIRILQDDIAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN+V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNVVNNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K +K
Sbjct: 184 RRVVEDCMKN-VHPIYHIKELMIKRELSKRPELANEDWSRFLPMFKKRNVARKKSKKPKK 242
Query: 255 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+ YTPFPP P K+D +ESGEYFLS+++KE KK +E++EKQ EK E +++R F
Sbjct: 243 EKKVYTPFPPAQLPRKVDLEIESGEYFLSKKEKEIKKLKERREKQEEKQVEKEKERRKDF 302
Query: 313 IPPEEPSRQNSCE 325
I P E ++S +
Sbjct: 303 IAPSEKEYKSSLQ 315
>gi|300175390|emb|CBK20701.2| unnamed protein product [Blastocystis hominis]
Length = 327
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 178/315 (56%), Positives = 240/315 (76%), Gaps = 8/315 (2%)
Query: 9 VNKKHKGK---HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
N+K +GK + K KPWD D ++ W++E++ + +LE SSF+T+FP+YRE+YL+
Sbjct: 13 TNEKKQGKKRNYRKDKPWD-DGTVNKWEIEEWKEEYMPSSLLEESSFATMFPRYREQYLR 71
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
E WP V L ++G+ CEL+ +EG+MTV TTRKT+DPYII+KARDLI+LL+RSVP QAI
Sbjct: 72 EVWPAVTKELDKHGIYCELDCIEGTMTVKTTRKTKDPYIILKARDLIKLLARSVPFNQAI 131
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 185
KILDD MQCDIIKIG V K+RF+KRRQ LVGP +TLKA+E+LT CY+LVQGNTVA M
Sbjct: 132 KILDDNMQCDIIKIGGYVTTKDRFIKRRQRLVGPEGATLKAIELLTDCYMLVQGNTVAVM 191
Query: 186 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKN-V 244
GS++GLK VRRI+ DCM+N +HP+Y IK LM+K+EL KDPAL NENWDRFLPKFKK+N
Sbjct: 192 GSYQGLKTVRRIIIDCMKN-IHPIYAIKTLMIKRELAKDPALKNENWDRFLPKFKKENKS 250
Query: 245 KQKKVKSKEKKPYTPFPPPPQ--PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 302
+ K ++K YTPFPP PSK+D +ESGEYFLSE++K+ ++ ++++ ++ K
Sbjct: 251 SKTKKVVVKEKKYTPFPPENHITPSKVDLQIESGEYFLSEQQKKEREMEKRRMEKKRKAG 310
Query: 303 ENKRKRDAAFIPPEE 317
+++R F+PP+E
Sbjct: 311 IKEQERQKKFVPPKE 325
>gi|395541221|ref|XP_003772545.1| PREDICTED: KRR1 small subunit processome component homolog
[Sarcophilus harrisii]
Length = 381
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 171/290 (58%), Positives = 226/290 (77%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 40 DGWKEPPFTKDDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALHEHHINATLDLIEG 99
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTVSTT+KT DPYII++ARDLI+LL+RSVP QAI+IL D+ CDIIKIG+LVRNKERF
Sbjct: 100 SMTVSTTKKTFDPYIIIRARDLIKLLARSVPFEQAIRILQDDTACDIIKIGSLVRNKERF 159
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 160 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSALGPFNGLKEVRKVVLDTMKN-IHPI 218
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L ++NW+RFLP+FK KN+ ++K K+ YTPFPPP S
Sbjct: 219 YNIKTLMIKRELSKDSELRSQNWERFLPQFKHKNLNKRKEPKKKTVKKEYTPFPPPQPES 278
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+IDK L SGEYFL E +K+ ++ ++ + KQAE ++ + +R+ AFIPP+E
Sbjct: 279 QIDKELASGEYFLKESQKKQQRMEQIKAKQAEAISKRQTERNKAFIPPKE 328
>gi|91081317|ref|XP_969842.1| PREDICTED: similar to dribble CG4258-PA [Tribolium castaneum]
Length = 350
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 190/323 (58%), Positives = 243/323 (75%), Gaps = 11/323 (3%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F P N G+LE SSF+TLFPQYRE+YL++ WP+V+ LKE+ ++ EL++VEGSMT
Sbjct: 23 KIPEFKPEDNPHGLLEESSFATLFPQYREQYLRQVWPLVQKTLKEHHINAELDVVEGSMT 82
Query: 93 ----VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
V TTRKT DPYII+KARD+I+L+SRSVP QA ++L+D++ CDIIKIG + RNKE+
Sbjct: 83 GCMTVRTTRKTWDPYIIIKARDMIKLMSRSVPFEQAKRVLNDDVGCDIIKIGKITRNKEK 142
Query: 149 FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
FVKRRQ L+GPN TLK++E+LT CY+LVQG TV+A+G +KGL+QVR+IVED M+N MHP
Sbjct: 143 FVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVSALGPYKGLQQVRKIVEDTMKN-MHP 201
Query: 209 VYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKSKEKKPYTPFPPPPQP 266
+Y+IK LM+KKEL KDP L NENWDRFLP+F KN+ ++ K KEKKPYTPFPPP
Sbjct: 202 IYNIKALMIKKELAKDPKLKNENWDRFLPRFVNKNISKRKQPKKKKEKKPYTPFPPPQTE 261
Query: 267 SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEA 326
SKIDK L SGEYFL++ +K KK +EK EK A + + KR+ AF+PPEEPS
Sbjct: 262 SKIDKELASGEYFLNKEQKRQKKQKEKNEKHAAAAKKREEKRNEAFVPPEEPSTSKQSPN 321
Query: 327 EDKTNDVAAMAKSLKEKAKKLRK 349
+ D+A SLKEK K RK
Sbjct: 322 VNTKVDIA----SLKEKIMKARK 340
>gi|340712796|ref|XP_003394941.1| PREDICTED: KRR1 small subunit processome component homolog [Bombus
terrestris]
Length = 340
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 165/291 (56%), Positives = 227/291 (78%), Gaps = 3/291 (1%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ F P N +LE SSF+TLFP+YRE+YL+E WP+++ +L+E+ + EL+L+EGSM+
Sbjct: 23 KIPSFKPEDNPHRLLEESSFATLFPKYREQYLKEHWPLIQKSLEEHAIKAELDLIEGSMS 82
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYII+KARD+++L+SRSVP QA+++L D++ DIIKI + VRN+E+FVKR
Sbjct: 83 VKTTRKTWDPYIIIKARDMLKLMSRSVPFEQAMRVLQDDIGSDIIKISSFVRNREKFVKR 142
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
RQ L+GP TLK++E+LT CY++VQG TVAA+G +KGL QVRRIVED M+N +HP+Y+I
Sbjct: 143 RQRLIGPKGCTLKSIELLTNCYVVVQGQTVAALGPYKGLIQVRRIVEDTMKN-IHPIYNI 201
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV--KSKEKKPYTPFPPPPQPSKID 270
K LM+K+EL KDP L NENW+RFLPKF KN+ ++K KEKKPYTPFPPP Q SK+D
Sbjct: 202 KALMIKRELAKDPKLKNENWERFLPKFNSKNISKRKQPKNRKEKKPYTPFPPPQQESKVD 261
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
K++ SGEYFL E +K +K+ +E+ + E + + +R AF+PPEE S++
Sbjct: 262 KMIASGEYFLKEEQKIAKRKREQDIRHQEAEKKRQERRAEAFVPPEEQSKE 312
>gi|169607927|ref|XP_001797383.1| hypothetical protein SNOG_07028 [Phaeosphaeria nodorum SN15]
gi|160701520|gb|EAT85679.2| hypothetical protein SNOG_07028 [Phaeosphaeria nodorum SN15]
Length = 509
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 186/304 (61%), Positives = 229/304 (75%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E F P N G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HKKEKPWDTD-DIDKWKIEPFKPEDNTAGAFTDESRFSTLFPKYREQYLKGSWKFITQAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++GV CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILDDE+ D
Sbjct: 64 AKHGVGCELNLVEGSMTVWTTQKTYDPAAILNARDLIKLLARSVPAPQAVKILDDEVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLV NKERFVKRRQ ++GPN STLKALE+LT Y+LVQGNTVAAMG FKGLK VR
Sbjct: 124 IIKIRNLVGNKERFVKRRQRILGPNGSTLKALELLTETYLLVQGNTVAAMGPFKGLKTVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI+ED M N +HP+Y IK LM+KKEL KDP L NE+WDRFLP FKK+++ ++ KV
Sbjct: 184 RIIEDTMHN-IHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP + SK+D +ESGEYFL + KE K +E+++K +K +R+R A
Sbjct: 243 KAKKVYTPFPPPQEKSKVDLQIESGEYFLGKHAKERKAREEREDKMKDKMDAKRRERMAE 302
Query: 312 FIPP 315
++ P
Sbjct: 303 YVAP 306
>gi|328856064|gb|EGG05187.1| hypothetical protein MELLADRAFT_48934 [Melampsora larici-populina
98AG31]
Length = 428
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 191/374 (51%), Positives = 238/374 (63%), Gaps = 70/374 (18%)
Query: 4 NMEKTVNKKHKGK---HDKPKPWDEDPNIDHWKVE-------KFDPFWNEGGMLEVSSFS 53
N+ + +N + K K H K KPWD D +IDHWK+E KF PF E SSF+
Sbjct: 14 NINEEINLERKSKKQQHRKDKPWDTD-DIDHWKIEPFEMDPIKFKPFTEE------SSFA 66
Query: 54 TLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIR 113
TLFP+YRE YL+E W + L+ +GV+C L+LVEGSMTV TTRKT DP+II+KARDLI+
Sbjct: 67 TLFPKYREVYLREIWSHLTKVLETHGVACVLDLVEGSMTVKTTRKTCDPFIILKARDLIK 126
Query: 114 LLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC 173
LL+RSVP QA+KIL+D + CD++KIGN++RNKERFVKRRQ ++GP+ STLKA+E+LTGC
Sbjct: 127 LLARSVPITQAVKILEDGVACDVVKIGNIIRNKERFVKRRQRILGPSGSTLKAIELLTGC 186
Query: 174 YILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWD 233
YILVQG TV+ MG ++GLK VRRIV DCM+N +HPVYHIK LM+K+EL KDP L NENWD
Sbjct: 187 YILVQGTTVSVMGPYRGLKTVRRIVIDCMKN-IHPVYHIKELMIKRELAKDPKLVNENWD 245
Query: 234 RFLPKF-KKKNVKQKKVKSKE--------------------------------------- 253
RFLP F ++K KQK +
Sbjct: 246 RFLPNFSQRKKAKQKTTAEHQAIEESSHSNSNPNPQASSSKSTVLQTSQSDAFNESIAQQ 305
Query: 254 --------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENK 305
KK YTPFPPP PSKID+ LESGEYFL R+K K E + K+ ++ N
Sbjct: 306 KQKPKKIEKKKYTPFPPPQLPSKIDQQLESGEYFLKSREK--KTILETKRKEGQEAISNL 363
Query: 306 RK--RDAAFIPPEE 317
RK + F PP E
Sbjct: 364 RKLNKQTVFNPPME 377
>gi|195996143|ref|XP_002107940.1| hypothetical protein TRIADDRAFT_51950 [Trichoplax adhaerens]
gi|190588716|gb|EDV28738.1| hypothetical protein TRIADDRAFT_51950 [Trichoplax adhaerens]
Length = 348
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 179/300 (59%), Positives = 242/300 (80%), Gaps = 3/300 (1%)
Query: 19 KPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY 78
KP WD + IDHWK++ FD N G+LE SSF+TLFP+YREKYL+EAWP+V+ LK++
Sbjct: 16 KPSAWDHE-GIDHWKIDTFDEKDNPQGLLEESSFATLFPKYREKYLREAWPLVEEVLKQH 74
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
+ C+L+++EGSMTVSTTRKT DPY+I+KARDLI+LL+RSVP QA +IL+D M C+IIK
Sbjct: 75 NIKCKLDVIEGSMTVSTTRKTWDPYVIIKARDLIKLLARSVPVEQAKRILEDGMACEIIK 134
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
IG+LVRN++RF+KRRQ L+GPN +TLKALE+LTGCY+++QGNTVA +G++KGLKQ ++++
Sbjct: 135 IGSLVRNRQRFIKRRQRLIGPNGATLKALELLTGCYLMIQGNTVACLGTYKGLKQAKKVI 194
Query: 199 EDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYT 258
D M N +HP+Y+IK +M+K+EL +P +ANE+WDRFLPKFKK N+K+KKVK ++K+ YT
Sbjct: 195 IDTMNN-VHPIYNIKAMMIKRELANNPDMANESWDRFLPKFKKVNIKKKKVKIEKKE-YT 252
Query: 259 PFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP 318
PFPPP KIDK + SGEYFL ++++ K +E+Q KQAE + K KR+ F PP EP
Sbjct: 253 PFPPPQTERKIDKEMASGEYFLKKKERHFMKRKERQVKQAEAKEKRKAKREKLFTPPSEP 312
>gi|336373198|gb|EGO01536.1| hypothetical protein SERLA73DRAFT_70716 [Serpula lacrymans var.
lacrymans S7.3]
Length = 381
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 174/344 (50%), Positives = 236/344 (68%), Gaps = 36/344 (10%)
Query: 3 ENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYRE 61
E E VNK + H K KPWD D + +E+ GG+ E SSF+TLFP+YRE
Sbjct: 2 EGEEPVVNKNKR--HRKDKPWDTDDIDQSYSLEQ------AGGVFTEESSFATLFPKYRE 53
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
KYL+E W V AL +G+ C L+LV GSM+V TTRKT DPY+++KARD+I+LL+R V
Sbjct: 54 KYLREVWSAVTRALDSHGIGCTLDLVHGSMSVKTTRKTYDPYVLLKARDMIKLLARGVAI 113
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNT 181
QA+K+L D++ CDIIKIG+LVRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG+T
Sbjct: 114 SQAVKVLQDDVACDIIKIGSLVRNKERFVKRRQRIIGPDGSTLKAIELLTQCYVLVQGST 173
Query: 182 VAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK 241
V+ MG +K LK+VRRIV DCM+N +HP+Y IK LM+++EL KDP LA E+WDRFLP+F+K
Sbjct: 174 VSVMGPYKSLKEVRRIVLDCMKN-IHPIYRIKELMIRRELAKDPKLATESWDRFLPQFRK 232
Query: 242 KNVKQ--------------------------KKVKSKEKKPYTPFPPPPQPSKIDKLLES 275
+++K +K KK YTPFPPP P K+D LES
Sbjct: 233 RHLKTSEKTAKKNEKQAVKDEARKAAGLDPAQKTDKTAKKVYTPFPPPQLPRKVDMQLES 292
Query: 276 GEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 319
GEYFL ++E+++ +++++KQAE TA+ +++R FI P E +
Sbjct: 293 GEYFLKPHEREAREIEQRKQKQAETTAKRQKERAEVFIAPVETA 336
>gi|395820180|ref|XP_003783452.1| PREDICTED: KRR1 small subunit processome component homolog
[Otolemur garnettii]
Length = 380
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 242/333 (72%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K ++ KPKP D+D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KRSFRNQKPKPEDQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDIACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKAHQKKRQKMEAIKAKQAEALSKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA +
Sbjct: 314 QEERNKAFIPPKEKPVVKPKEASTETKIDVATI 346
>gi|350408959|ref|XP_003488565.1| PREDICTED: KRR1 small subunit processome component homolog [Bombus
impatiens]
Length = 340
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 165/291 (56%), Positives = 226/291 (77%), Gaps = 3/291 (1%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ F P N +LE SSF+TLFP+YRE+YL+E WP+++ +L E+ + EL+L+EGSM+
Sbjct: 23 KIPSFKPEDNPHRLLEESSFATLFPKYREQYLKEHWPLIQKSLDEHAIKAELDLIEGSMS 82
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYII+KARD+++L+SRSVP QA+++L D++ DIIKI + VRN+E+FVKR
Sbjct: 83 VKTTRKTWDPYIIIKARDMLKLMSRSVPFEQAMRVLQDDIGSDIIKISSFVRNREKFVKR 142
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
RQ L+GP TLK++E+LT CY++VQG TVAA+G +KGL QVRRIVED M+N +HP+Y+I
Sbjct: 143 RQRLIGPKGCTLKSIELLTNCYVVVQGQTVAALGPYKGLIQVRRIVEDTMKN-IHPIYNI 201
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV--KSKEKKPYTPFPPPPQPSKID 270
K LM+K+EL KDP L NENW+RFLPKF KN+ ++K KEKKPYTPFPPP Q SK+D
Sbjct: 202 KALMIKRELAKDPKLKNENWERFLPKFNSKNISKRKQPRNKKEKKPYTPFPPPQQESKVD 261
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
K++ SGEYFL E +K +K+ +E+ + E + + +R AF+PPEE S++
Sbjct: 262 KMIASGEYFLKEEQKIAKRKREQDIRHQEAEKKRQERRAEAFVPPEEQSKE 312
>gi|66359348|ref|XP_626852.1| ribosomal RNA assembly protein mis3/dribble/Krr1p. KH domain
[Cryptosporidium parvum Iowa II]
gi|46228137|gb|EAK89036.1| ribosomal RNA assembly protein mis3/dribble/Krr1p. KH domain
[Cryptosporidium parvum Iowa II]
Length = 358
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 184/322 (57%), Positives = 235/322 (72%), Gaps = 9/322 (2%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR 60
+G ME K ++ K KPWD D +IDHW V K P N G+LE SSF+ LFP+YR
Sbjct: 6 VGTPMENQEIISKKRRYRKDKPWDTD-DIDHWNVPKLTPEDNPHGLLEESSFAVLFPKYR 64
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKYL++ WP ++ ALK + + CEL+LVEGS+TV TT KT DP+II++ARD+++LLSRSVP
Sbjct: 65 EKYLRDIWPDIRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARDMVKLLSRSVP 124
Query: 121 APQAIKIL-----DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYI 175
QA++IL D+ + CDIIKIG+ RNKE+ VKRRQ LVGPN STLKA+E+LT CY+
Sbjct: 125 FHQAVRILGEGEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLKAIELLTNCYV 182
Query: 176 LVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRF 235
LVQG TV+ +GS+K LK VRRIVEDCM N +HPVYHIK LM+K+ELEKD L ENWDRF
Sbjct: 183 LVQGQTVSVIGSYKSLKLVRRIVEDCMNN-IHPVYHIKELMIKRELEKDERLRGENWDRF 241
Query: 236 LPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 295
LPKFK K VK+K K +KK + FPP P P K D LLE+GEYF SE ++++K+ +E+
Sbjct: 242 LPKFKNKCVKRKVKKQIKKKNKSIFPPEPTPRKEDMLLETGEYFYSELERKAKQIKERIS 301
Query: 296 KQAEKTAENKRKRDAAFIPPEE 317
+Q EK E +R+ +IPP E
Sbjct: 302 EQKEKKNEKHMEREKMYIPPNE 323
>gi|448086732|ref|XP_004196171.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
gi|359377593|emb|CCE85976.1| Piso0_005618 [Millerozyma farinosa CBS 7064]
Length = 372
Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 174/314 (55%), Positives = 237/314 (75%), Gaps = 6/314 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
+++ KPWD D +ID W+ ++F N G+ E S+F TLFP+YRE+YL++ W +
Sbjct: 5 YNRDKPWDTD-DIDKWQTDEFKEEDNASGLPFAEESTFMTLFPKYREQYLRQIWGDMTRE 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L +Y + C+L+LVEGSMTV TTRKT DP +I+KARDLI+LL+RSVP PQA+KIL +++ C
Sbjct: 64 LSKYHIDCQLDLVEGSMTVKTTRKTYDPAMILKARDLIKLLARSVPFPQAVKILQEDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D++KIGN V NK+RFVKRRQ LVGPN +TLKALE+LT CY+LVQG+TV+AMG +KGLK V
Sbjct: 124 DVVKIGNFVTNKDRFVKRRQRLVGPNGNTLKALELLTKCYVLVQGSTVSAMGPYKGLKVV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM N +HP+YHIK LM+K+EL +P +A+E+W RFLP+FKK+NV +KK+K +K
Sbjct: 184 RRVVEDCMNN-VHPIYHIKELMLKQELASNPDIAHEDWSRFLPQFKKRNVARKKLKQSKK 242
Query: 255 KP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
+ YTPFPPP QP K+D +ESGEYFL ++++ +K + K+E Q E + K+ R F
Sbjct: 243 EKKVYTPFPPPQQPRKVDLQMESGEYFLGKKERSAKALETKREHQKEASETRKQDRMKDF 302
Query: 313 IPPEEPSRQNSCEA 326
PEE + +N A
Sbjct: 303 EAPEEENYRNELVA 316
>gi|410918454|ref|XP_003972700.1| PREDICTED: KRR1 small subunit processome component homolog
[Takifugu rubripes]
Length = 380
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 178/323 (55%), Positives = 236/323 (73%), Gaps = 6/323 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL + + ++L+EG
Sbjct: 36 DGWKEPSFTREDNLHGLLEESSFATLFPKYREAYLKECWPLVEKALADVHIKATMDLIEG 95
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TTRKT DPY I++ARDLI+LL+RSVP QA++IL D++ CDIIKIG LVRNKERF
Sbjct: 96 SMTVHTTRKTFDPYAIIRARDLIKLLARSVPFEQAVRILQDDIACDIIKIGTLVRNKERF 155
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+GSF GLK+VR++V D M+N +HP+
Sbjct: 156 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGSFSGLKEVRKVVMDTMKN-IHPI 214
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE--KKPYTPFPPPPQPS 267
Y+IK LM+K+EL KDP L +NW+RFLPKF++KN+ +++ K+ KK YTPFPP S
Sbjct: 215 YNIKTLMIKRELAKDPELRAQNWERFLPKFRRKNLAKRREPKKKAVKKEYTPFPPSQPES 274
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQNSCEA 326
K+D+ L +GE+FL E K+ KK + + KQAE ++ K +R+ FIPP E+P + S E
Sbjct: 275 KVDQELATGEFFLRESVKKRKKMEAIKVKQAEVLSKKKEERNKHFIPPKEKPLMKKSTEG 334
Query: 327 --EDKTNDVAAMAKSLKEKAKKL 347
E K + A K + K KKL
Sbjct: 335 PTESKLDIEAIKMKVKRAKTKKL 357
>gi|336258379|ref|XP_003344005.1| 90S preribosome/SSU processome component KRR1 [Sordaria macrospora
k-hell]
gi|380087230|emb|CCC14406.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 323
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 181/305 (59%), Positives = 231/305 (75%), Gaps = 6/305 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H+K KPWD D +ID WKV+ F + G LE SSF TLFP+YRE+YL+++WP++ AL
Sbjct: 5 HNKDKPWDTD-DIDKWKVDPFTKDESSGPFLEESSFMTLFPKYRERYLRDSWPLITKALD 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
+ G++ L+LVEGSMTV TTRKT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 64 KQGITAVLDLVEGSMTVKTTRKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
IKI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG FKGLK+VRR
Sbjct: 124 IKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTQTYILVHGNTVSVMGPFKGLKEVRR 183
Query: 197 IVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK----VKSK 252
+VED M N +HP+Y IK LM+K+EL KDPALA+E+W R+LP FKK+ + +++ V K
Sbjct: 184 VVEDTMNN-VHPIYMIKELMIKRELAKDPALAHEDWSRYLPNFKKRTLSKRRVPHVVSDK 242
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
KK YTPFPP P+ SK+D +ESGEYFL + K+ QE+ EK K E KR+R+ +
Sbjct: 243 AKKNYTPFPPAPEKSKVDLQIESGEYFLGKEAKQRVAEQERAEKAKAKKEEKKREREKEY 302
Query: 313 IPPEE 317
+PPEE
Sbjct: 303 VPPEE 307
>gi|126339445|ref|XP_001371361.1| PREDICTED: KRR1 small subunit processome component homolog
[Monodelphis domestica]
Length = 383
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/290 (58%), Positives = 225/290 (77%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 40 DGWKEPPFTKDDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALHEHHINATLDLIEG 99
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSVP QAI+IL+D CDIIKIG+LVRNKERF
Sbjct: 100 SMTVCTTKKTFDPYIIIRARDLIKLLARSVPFEQAIRILEDNNACDIIKIGSLVRNKERF 159
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 160 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSALGPFNGLKEVRKVVLDTMKN-IHPI 218
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L ++NW+RFLP+FK KN+ ++K K+ YTPFPPP S
Sbjct: 219 YNIKTLMIKRELSKDAELRSQNWERFLPQFKHKNLNKRKEPKKKTVKKEYTPFPPPQPES 278
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+IDK L SGEYFL E +K+ +K ++ + KQAE ++ + +R+ AF+PP+E
Sbjct: 279 RIDKELASGEYFLKESQKKQQKMEQIKAKQAEAVSKRQAERNKAFVPPKE 328
>gi|300121233|emb|CBK21614.2| unnamed protein product [Blastocystis hominis]
Length = 328
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 178/316 (56%), Positives = 239/316 (75%), Gaps = 9/316 (2%)
Query: 9 VNKKHKGK---HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
++K +GK + K KPWD D ++ W++E++ + +LE SSF+T+FP+YRE+YL+
Sbjct: 13 TDEKKQGKKRNYRKDKPWD-DGTVNKWEIEEWKEEYMPSSLLEESSFATMFPRYREQYLR 71
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
E WP V L ++G+ CEL+ +EG+MTV TTRKT+DPYII+KARDLI+LL+RSVP QAI
Sbjct: 72 EVWPAVTKELDKHGIYCELDCIEGTMTVKTTRKTKDPYIILKARDLIKLLARSVPFNQAI 131
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 185
KILDD MQCDIIKIG V K+RF+KRRQ LVGP +TLKA+E+LT CY+LVQGNTVA M
Sbjct: 132 KILDDNMQCDIIKIGGYVTTKDRFIKRRQRLVGPEGATLKAIELLTDCYMLVQGNTVAVM 191
Query: 186 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 245
GS++GLK VRRI+ DCM+N +HP+Y IK LM+K+EL KDPAL NENWDRFLPKFKK+N
Sbjct: 192 GSYQGLKTVRRIIIDCMKN-IHPIYAIKTLMIKRELAKDPALKNENWDRFLPKFKKENKS 250
Query: 246 QKKVKSKEKKP--YTPFPPPPQ--PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKT 301
K K K+ YTPFPP PSK+D +ESGEYFLSE++K+ ++ ++++ ++ K
Sbjct: 251 SKTKKVVVKEKNRYTPFPPENHITPSKVDLQIESGEYFLSEQQKKEREMEKRRMEKKRKA 310
Query: 302 AENKRKRDAAFIPPEE 317
+++R F+PP+E
Sbjct: 311 GIKEQERQKKFVPPKE 326
>gi|427780601|gb|JAA55752.1| Putative rrna processing protein [Rhipicephalus pulchellus]
Length = 318
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/279 (61%), Positives = 226/279 (81%), Gaps = 3/279 (1%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G++ S+F+TLFP+YREKYL+E WP+VK L E+GV+ EL+++EGSMTV+TTRK D
Sbjct: 23 NPHGVMCESAFATLFPKYREKYLRECWPLVKKTLSEHGVNAELDVIEGSMTVTTTRKMWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+LLSRSVP QAI++L+D + CDI+KIG LVRN+ERF+KRRQ L+GPN
Sbjct: 83 PYIILKARDMIKLLSRSVPYEQAIRVLEDGVGCDIVKIGRLVRNRERFIKRRQRLLGPNG 142
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
+TLKA+E+LT CY+LVQGNTVAA+G +KGL+ VR+IVED M+N +HPVY+IK LM+K+EL
Sbjct: 143 TTLKAIELLTNCYVLVQGNTVAALGPYKGLQHVRKIVEDTMKN-IHPVYNIKALMIKREL 201
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKK--VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 279
KDP L NENWDRFLP FK + + ++K K + K YTPFPPP SK+DK L SGEYF
Sbjct: 202 AKDPKLRNENWDRFLPHFKAQTLSKRKKPKKQRVKGEYTPFPPPQPESKMDKELASGEYF 261
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP 318
L ER++++KK EK++ +AE A+ + +R+ +F PPEEP
Sbjct: 262 LKERERKAKKKHEKEQSKAEAEAKRQERRNKSFQPPEEP 300
>gi|307214181|gb|EFN89298.1| KRR1 small subunit processome component-like protein [Harpegnathos
saltator]
Length = 342
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/292 (59%), Positives = 229/292 (78%), Gaps = 3/292 (1%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F N +LE SSF+TLFP+YRE+YL+E W +++ AL+E+ ++ EL+LVEGSMT
Sbjct: 22 KIPQFKKEDNPHRLLEESSFATLFPKYREQYLKEHWSLIQKALEEHAITAELDLVEGSMT 81
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYII+KARD+I+LLSRSVP QA+K+L DE+ DIIKI +L+R+KE+FVKR
Sbjct: 82 VKTTRKTWDPYIIIKARDMIKLLSRSVPYEQAMKVLQDEISADIIKISSLIRDKEKFVKR 141
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
RQ L+GPN STLKA+E+LT CY+LVQG TVAA+G +KGL+QVRRI ED M+N +HP+Y+I
Sbjct: 142 RQRLIGPNGSTLKAIELLTNCYVLVQGQTVAALGPYKGLQQVRRIAEDTMKN-IHPIYNI 200
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSKID 270
K LM+K+EL KDP L NENWDRFLPKF KN+ +++ K KEKKPYT FPP PQ SK+D
Sbjct: 201 KALMIKRELAKDPKLTNENWDRFLPKFNNKNINKRKQPRKKKEKKPYTTFPPLPQESKLD 260
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 322
K + +GEYFL+E +K +K+ +E+ + E T + +R AF+PPEE +N
Sbjct: 261 KQIATGEYFLNEEQKRAKRKKEQDARHEEATKRRQERRAQAFVPPEEKPVEN 312
>gi|417399949|gb|JAA46955.1| Putative rrna processing protein [Desmodus rotundus]
Length = 381
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 182/339 (53%), Positives = 244/339 (71%), Gaps = 9/339 (2%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR 60
+ T K + + KPKP + D + D WK F N G+LE SSF+TLFP+YR
Sbjct: 9 QATAAGKREFHNQKPKPDNHDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYR 68
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
E YL+E WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV
Sbjct: 69 EAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVS 128
Query: 121 APQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN 180
QA++IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGN
Sbjct: 129 FEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGN 188
Query: 181 TVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFK 240
TV+A+G F+GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK
Sbjct: 189 TVSAIGPFRGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFK 247
Query: 241 KKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQA 298
KNV ++K K+ YTPFPPP S+IDK L +GEYFL +K+ +K + + KQA
Sbjct: 248 HKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELATGEYFLKASQKKRQKMEAIKAKQA 307
Query: 299 EKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
E + + +R+ AFIPP+E EA +T DVAA+
Sbjct: 308 EALTKRQEERNKAFIPPKEKPVVKPKEASTETKIDVAAI 346
>gi|426373503|ref|XP_004053641.1| PREDICTED: KRR1 small subunit processome component homolog [Gorilla
gorilla gorilla]
Length = 381
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPTVKPKEASTETKIDVASI 346
>gi|241111418|ref|XP_002399277.1| rRNA processing protein, putative [Ixodes scapularis]
gi|215492943|gb|EEC02584.1| rRNA processing protein, putative [Ixodes scapularis]
Length = 352
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 174/295 (58%), Positives = 229/295 (77%), Gaps = 6/295 (2%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G+L S+F+TLFP+YREKYL+E WP+VK L E+GV+ EL+++EGSMTVSTT+K D
Sbjct: 36 NPHGVLCESAFATLFPKYREKYLRECWPLVKKTLSEHGVNGELDVIEGSMTVSTTKKMWD 95
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+LLSRSVP QAI++L+D++ CDIIKIG++VRN+ERFVKRRQ LVGPN
Sbjct: 96 PYIILKARDMIKLLSRSVPYEQAIRVLEDDVGCDIIKIGSMVRNRERFVKRRQRLVGPNG 155
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
+TLKA+E+LT CY+LVQGNTVAA+G +KGL+ VR+I E+ M+N +HP+Y+IK LM+K+EL
Sbjct: 156 TTLKAIELLTNCYVLVQGNTVAALGPYKGLQHVRKIAEETMKN-IHPIYNIKALMIKREL 214
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYF 279
KDP L +ENW+RFLPKFK K + ++K K + YTPFPP SK+DK L SGEYF
Sbjct: 215 AKDPKLKDENWERFLPKFKSKTLSKRKKPKKRRTKGEYTPFPPEQPESKMDKELASGEYF 274
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP---SRQNSCEAEDKTN 331
L ER+K+ KK Q+K EK+ E + +R+ F PPEEP S++ EAE +
Sbjct: 275 LKEREKKDKKMQQKNEKKVEAEVRRQERRNKPFEPPEEPKYVSKKRPAEAESAVD 329
>gi|380809140|gb|AFE76445.1| KRR1 small subunit processome component homolog [Macaca mulatta]
gi|384945036|gb|AFI36123.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 381
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 182/333 (54%), Positives = 244/333 (73%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE T++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEATSKK 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|195437492|ref|XP_002066674.1| GK24616 [Drosophila willistoni]
gi|378548398|sp|B4N0P7.1|KRR1_DROWI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194162759|gb|EDW77660.1| GK24616 [Drosophila willistoni]
Length = 347
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 177/308 (57%), Positives = 232/308 (75%), Gaps = 6/308 (1%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
DP + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ A+ E+ + E
Sbjct: 15 DPVDNAWSLKIPAFKETDNPHGMIEESSFATLFPKYREKYLKEVWPLVEQAVGEHHLKAE 74
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+LVEGSM V TTRKT DPYII+KARD+I+L++RSVP QA ++L DE+ CDIIKIGNLV
Sbjct: 75 LDLVEGSMVVKTTRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDEIGCDIIKIGNLV 134
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
+ KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M
Sbjct: 135 QKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMN 194
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFP 261
N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPFP
Sbjct: 195 N-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNLSKRKQPKVKKPKKEYTPFP 253
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSR 320
P SKIDK L SGEYFL++ +K++K+ QE+Q KQAE + +R+ FIPP EEP
Sbjct: 254 PAQPESKIDKQLASGEYFLNKEQKQAKRQQERQTKQAEAAKKQDERRNKDFIPPTEEPPT 313
Query: 321 QNSCEAED 328
+ +A D
Sbjct: 314 GSKRKAND 321
>gi|117676403|ref|NP_008974.5| KRR1 small subunit processome component homolog [Homo sapiens]
gi|50400303|sp|Q13601.4|KRR1_HUMAN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=HIV-1 Rev-binding protein 2; AltName:
Full=KRR-R motif-containing protein 1; AltName:
Full=Rev-interacting protein 1; Short=Rip-1
gi|119617715|gb|EAW97309.1| HIV-1 Rev binding protein 2 [Homo sapiens]
Length = 381
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|410220502|gb|JAA07470.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410261984|gb|JAA18958.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410261986|gb|JAA18959.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410305048|gb|JAA31124.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
gi|410351423|gb|JAA42315.1| KRR1, small subunit (SSU) processome component, homolog [Pan
troglodytes]
Length = 381
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEYRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|331252066|ref|XP_003338607.1| hypothetical protein PGTG_20088 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309317597|gb|EFP94188.1| hypothetical protein PGTG_20088 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 393
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/356 (52%), Positives = 236/356 (66%), Gaps = 50/356 (14%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFD-------PFWNEGGMLEVSSFSTLFPQYRE 61
+ K K KH K KPWD D +IDHWK+E F+ PF E SSF+TLFP+YRE
Sbjct: 22 IQKSKKQKHRKDKPWDTD-DIDHWKIEPFELEKEKIKPFTEE------SSFATLFPKYRE 74
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
YL+E W + L+++GV+C LNLVEGSMTV TTRKT DPYII+KARDLI+LL+RSVP
Sbjct: 75 VYLKEIWSHLTKVLEQHGVTCVLNLVEGSMTVKTTRKTVDPYIILKARDLIKLLARSVPI 134
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNT 181
QA+KILDD + CD+IKIGN++RNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG T
Sbjct: 135 TQAVKILDDNVACDVIKIGNVIRNKERFVKRRQRILGPSGSTLKAIELLTDCYLLVQGTT 194
Query: 182 VAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK 241
V+AMG +KGLK VRRIV DCM+N +HP+YHIK LM+K+EL K+P LA ENWDRFLP F K
Sbjct: 195 VSAMGPYKGLKVVRRIVIDCMKN-IHPIYHIKELMIKRELAKNPKLAEENWDRFLPNFTK 253
Query: 242 KNVKQKKVKS--KEKKP--------------------------------YTPFPPPPQPS 267
+ ++ + E++P YTPFPPP P
Sbjct: 254 RKRAKQAKAAKVSEEQPSVGRSVQDTSQAAAFRSEQAKQKSMQEKKKKKYTPFPPPQMPR 313
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD-AAFIPPEEPSRQN 322
KID LESGEYF + + +S++ E ++ + + N RK + A PP E SR N
Sbjct: 314 KIDLELESGEYFKKKARTKSERADESKKAEGREIVSNLRKLNKAQDQPPAEESRAN 369
>gi|294894848|ref|XP_002774982.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
gi|239880765|gb|EER06798.1| ribosomal RNA assembly protein, putative [Perkinsus marinus ATCC
50983]
Length = 526
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 180/292 (61%), Positives = 216/292 (73%), Gaps = 3/292 (1%)
Query: 11 KKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
K K K+ + KPWD + IDHWK E F N G+LE SSF+TLFPQYRE YL++ WP
Sbjct: 25 KMKKNKYRRDKPWDHE-GIDHWKYESFAKEDNPSGLLEESSFATLFPQYRENYLKQVWPD 83
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
VK L + + ELNLVEGSMTV TTRKT DPY I++ARDLI+LL+RSVP PQA KI+DD
Sbjct: 84 VKQVLAPFEIKAELNLVEGSMTVRTTRKTWDPYAIIRARDLIKLLARSVPLPQAKKIMDD 143
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 190
M CDIIK G LVRNKE+FVKRRQ LVGPN STLKA+E+LT CY+LVQG TV AMG+ K
Sbjct: 144 NMFCDIIKTGGLVRNKEKFVKRRQRLVGPNGSTLKAIELLTQCYVLVQGQTVVAMGTHKA 203
Query: 191 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 250
LKQVRRIVEDC N +HPVYH+K LM+KKELEK+ L +ENWDRFLP FK +NV++KK K
Sbjct: 204 LKQVRRIVEDCFHN-VHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNVQRKKQK 262
Query: 251 SKEKKPYTP-FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKT 301
KK FPP P K D +E+GEYFLS+ +K S + +K+E Q ++
Sbjct: 263 KIAKKKSKELFPPEQLPRKEDIQIETGEYFLSKDQKHSNEMTKKREHQKQRA 314
>gi|189053929|dbj|BAG36436.1| unnamed protein product [Homo sapiens]
Length = 381
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEKSSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|397526018|ref|XP_003832938.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Pan paniscus]
Length = 381
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEYRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILHDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|297692480|ref|XP_002823579.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Pongo abelii]
Length = 381
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASAETKIDVASI 346
>gi|332220930|ref|XP_003259610.1| PREDICTED: KRR1 small subunit processome component homolog
[Nomascus leucogenys]
Length = 381
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|410965126|ref|XP_003989103.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Felis catus]
Length = 381
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 242/333 (72%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP + D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNKKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA + DVAA+
Sbjct: 314 QEERNKAFIPPKEKPVVKPKEASTENKIDVAAI 346
>gi|117938813|gb|AAH05225.1| KRR1 protein [Homo sapiens]
Length = 362
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|226442952|ref|NP_848725.2| KRR1 small subunit processome component homolog [Mus musculus]
gi|50400505|sp|Q8BGA5.1|KRR1_MOUSE RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=HIV-1 Rev-binding protein 2 homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|26326557|dbj|BAC27022.1| unnamed protein product [Mus musculus]
gi|26334765|dbj|BAC31083.1| unnamed protein product [Mus musculus]
gi|59809046|gb|AAH89510.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Mus musculus]
gi|74219882|dbj|BAE40525.1| unnamed protein product [Mus musculus]
gi|148689796|gb|EDL21743.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_b [Mus musculus]
Length = 380
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 175/310 (56%), Positives = 230/310 (74%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 215
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 216 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPES 275
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA
Sbjct: 276 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEAS 335
Query: 328 DKTN-DVAAM 336
+T DVAA+
Sbjct: 336 TETKIDVAAI 345
>gi|62825895|gb|AAH94236.1| Krr1 protein [Mus musculus]
Length = 379
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 175/310 (56%), Positives = 230/310 (74%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 36 DVWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 95
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 96 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 155
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 156 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 214
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 215 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPES 274
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA
Sbjct: 275 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEAS 334
Query: 328 DKTN-DVAAM 336
+T DVAA+
Sbjct: 335 TETKIDVAAI 344
>gi|403271960|ref|XP_003927864.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Saimiri boliviensis boliviensis]
Length = 388
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 174/304 (57%), Positives = 229/304 (75%), Gaps = 6/304 (1%)
Query: 19 KPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KP+ DE + D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL
Sbjct: 24 KPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKAL 83
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL D++ CD
Sbjct: 84 NEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSYEQAVRILQDDVACD 143
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR
Sbjct: 144 IIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVR 203
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 255
++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+
Sbjct: 204 KVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTV 262
Query: 256 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFI
Sbjct: 263 KKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAVSKRQEERNKAFI 322
Query: 314 PPEE 317
PP+E
Sbjct: 323 PPKE 326
>gi|148689797|gb|EDL21744.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_c [Mus musculus]
Length = 380
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 175/310 (56%), Positives = 230/310 (74%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 215
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 216 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPES 275
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA
Sbjct: 276 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEAS 335
Query: 328 DKTN-DVAAM 336
+T DVAA+
Sbjct: 336 TETKIDVAAI 345
>gi|21707899|gb|AAH33887.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
Length = 381
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 175/313 (55%), Positives = 235/313 (75%), Gaps = 8/313 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPGSQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEE 317
+ +R+ AFIPP+E
Sbjct: 314 QEERNKAFIPPKE 326
>gi|344266385|ref|XP_003405261.1| PREDICTED: KRR1 small subunit processome component homolog
[Loxodonta africana]
Length = 381
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 175/310 (56%), Positives = 232/310 (74%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFDQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 216
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 217 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPES 276
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
+IDK L SGEYFL +K+ +K + + KQAE ++ + +R AFIPP+E EA
Sbjct: 277 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEAVSKRQEERKKAFIPPKEKPVVKPKEAS 336
Query: 328 DKTN-DVAAM 336
++T DVAA+
Sbjct: 337 NETKIDVAAI 346
>gi|19913489|gb|AAH26107.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
Length = 381
Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 180/333 (54%), Positives = 243/333 (72%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++ D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVALDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|331249379|ref|XP_003337307.1| hypothetical protein PGTG_18806 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316297|gb|EFP92888.1| hypothetical protein PGTG_18806 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 393
Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 186/353 (52%), Positives = 236/353 (66%), Gaps = 44/353 (12%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG----MLEVSSFSTLFPQYREKYL 64
+ K K KH K KPWD D +IDHWK+E PF E + E SSF+TLFP+YRE YL
Sbjct: 22 IQKSKKQKHRKEKPWDTD-DIDHWKIE---PFELEKEKIKPLTEESSFATLFPKYREVYL 77
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
+E W + L+++GV+C LNLVEGSMTV TTRKT DPYII+KARDLI+LL+RSVP QA
Sbjct: 78 KEIWSHLTKVLEQHGVACVLNLVEGSMTVKTTRKTVDPYIILKARDLIKLLARSVPITQA 137
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA 184
+KILDD + CD+IKIGN++RNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQG TV+A
Sbjct: 138 VKILDDNVACDVIKIGNVIRNKERFVKRRQRILGPSGSTLKAIELLTDCYLLVQGTTVSA 197
Query: 185 MGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 244
MG +KGLK VRRIV DCM+N +HP+YHIK LM+K+EL K+P LA ENWDRFLP F K+
Sbjct: 198 MGPYKGLKVVRRIVIDCMKN-IHPIYHIKELMIKRELAKNPKLAEENWDRFLPNFTKRKR 256
Query: 245 KQKKVKS--KEKKP--------------------------------YTPFPPPPQPSKID 270
++ + E++P YTPFPPP P KID
Sbjct: 257 AKQAKAAKVSEQQPSVGRSVQDTSQAAAFRSEQAKQKSMQEKKKKKYTPFPPPQMPRKID 316
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRD-AAFIPPEEPSRQN 322
LESGEYF + + +S++ E ++ + + N RK + A PP E SR N
Sbjct: 317 LELESGEYFKKKARTKSERADESKKAEGREIVSNLRKLNKAQDQPPAEESRAN 369
>gi|410078430|ref|XP_003956796.1| hypothetical protein KAFR_0D00150 [Kazachstania africana CBS 2517]
gi|372463381|emb|CCF57661.1| hypothetical protein KAFR_0D00150 [Kazachstania africana CBS 2517]
Length = 344
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 176/269 (65%), Positives = 211/269 (78%), Gaps = 6/269 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
++K KPWD + +ID W+ E+F P N G+ E SSF TLFP+YRE YL+ W V A
Sbjct: 5 YNKEKPWDTE-DIDKWQTEEFKPEDNASGLPFAEESSFMTLFPKYRESYLKSVWKDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L+++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQAIKIL+D M C
Sbjct: 64 LEKHHIACILDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAIKILEDNMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVSNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEK 254
RR+VEDCM N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV +KK K K
Sbjct: 184 RRVVEDCMLN-VHPIYHIKELMIKRELAKKPELANEDWSRFLPMFKKRNVARKKPKKIRK 242
Query: 255 KP--YTPFPPPPQPSKIDKLLESGEYFLS 281
+ YTPFPP P K+D +ESGEYFLS
Sbjct: 243 EKKVYTPFPPTQLPRKVDLEIESGEYFLS 271
>gi|195032987|ref|XP_001988598.1| GH10489 [Drosophila grimshawi]
gi|378548394|sp|B4JDU5.1|KRR1_DROGR RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|193904598|gb|EDW03465.1| GH10489 [Drosophila grimshawi]
Length = 341
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 171/299 (57%), Positives = 226/299 (75%), Gaps = 7/299 (2%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
+P + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ + E+ + E
Sbjct: 15 EPVDNAWSLKIPTFKAEDNPHGMVEESSFATLFPKYREKYLKEVWPLVQQTVAEHHLRAE 74
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L DE CDIIKIGNLV
Sbjct: 75 LDLIEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDETGCDIIKIGNLV 134
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTVAA+G +KGL+QVR IV + M
Sbjct: 135 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYKGLQQVRDIVLETMN 194
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP---YTPF 260
N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K + K +KP YTPF
Sbjct: 195 N-VHPIYNIKALMIKRELMKDPQLANEDWSRFLPKFKNKNISKRK-QPKSRKPKGEYTPF 252
Query: 261 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 319
PP SKIDK L SGEYFL++ +K++K+ QE+ KQAE + +R+ F+PP E S
Sbjct: 253 PPAQPESKIDKQLASGEYFLNKEQKQAKRQQERVAKQAEAAKKQDERRNKDFMPPTEDS 311
>gi|301770537|ref|XP_002920686.1| PREDICTED: KRR1 small subunit processome component homolog
[Ailuropoda melanoleuca]
Length = 380
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 243/341 (71%), Gaps = 9/341 (2%)
Query: 4 NMEKTVNKKHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQ 58
N T + K + + KPKP + D + D WK F N G+LE SSF+TLFP+
Sbjct: 7 NGPGTADGKSEFRSKKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPK 66
Query: 59 YREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
YRE YL+E WP+V+ AL E+ +S L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RS
Sbjct: 67 YREAYLKECWPLVQKALNEHHISATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARS 126
Query: 119 VPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
V QA++IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 127 VSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQ 186
Query: 179 GNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPK 238
GNTV+ +G F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+
Sbjct: 187 GNTVSVIGPFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQ 245
Query: 239 FKKKNVKQ--KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEK 296
FK KNV + + K KK YTPFPPP S+IDK L SGEYFL +K+ +K + + K
Sbjct: 246 FKHKNVNKCKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAK 305
Query: 297 QAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
QAE ++ + +R+ AFIPP+E EA + DVAA+
Sbjct: 306 QAEALSKRQEERNKAFIPPKEKPVVKPKEASTENKIDVAAI 346
>gi|355564479|gb|EHH20979.1| HIV-1 Rev-binding protein 2 [Macaca mulatta]
Length = 381
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 243/333 (72%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKK 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|355786322|gb|EHH66505.1| HIV-1 Rev-binding protein 2 [Macaca fascicularis]
Length = 381
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 243/333 (72%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKK 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|195118158|ref|XP_002003607.1| GI18007 [Drosophila mojavensis]
gi|378548395|sp|B4KF66.1|KRR1_DROMO RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|193914182|gb|EDW13049.1| GI18007 [Drosophila mojavensis]
Length = 344
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 181/332 (54%), Positives = 241/332 (72%), Gaps = 12/332 (3%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
+P + W K+ F P N G++E SSF+TLFP+YREKYL+E WP+V+ L E+ + E
Sbjct: 15 EPVDNAWSLKIPAFKPEDNPHGLVEESSFATLFPKYREKYLKEVWPLVEQCLAEHHLKAE 74
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D+ CDIIKIGNLV
Sbjct: 75 LDLIEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDTGCDIIKIGNLV 134
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV D M
Sbjct: 135 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLDTMN 194
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFP 261
N +HP+Y+IK LM+K+EL KDP LA E+W RFLPKFK KN+ ++K +K YTPFP
Sbjct: 195 N-VHPIYNIKALMIKRELMKDPKLAGEDWSRFLPKFKNKNISKRKQPKNKKPKKEYTPFP 253
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE---- 317
P SKIDK L +GEYFL++ +K++K+ QE+ KQAE + +R+ F+PP E
Sbjct: 254 PQQPESKIDKQLATGEYFLNKEQKQAKRQQERTAKQAEAAKKQDERRNKDFVPPTEDTPG 313
Query: 318 PSRQNSCEAEDKTNDVAAM-AKSLKEKAKKLR 348
PSR+ + AED DV A+ AK +K KK R
Sbjct: 314 PSRKRA--AEDNKVDVQALKAKLMKANKKKER 343
>gi|311255954|ref|XP_003126436.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Sus scrofa]
Length = 375
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 181/329 (55%), Positives = 240/329 (72%), Gaps = 9/329 (2%)
Query: 16 KHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
+ KPKP + D + D WK F N G+LE SSF+TLFP+YRE YL+E WP+
Sbjct: 13 RRQKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPL 72
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D
Sbjct: 73 VQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQD 132
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 190
++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F G
Sbjct: 133 DVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSG 192
Query: 191 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKK 248
LK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +++
Sbjct: 193 LKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEP 251
Query: 249 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 308
K KK YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +R
Sbjct: 252 KKKTTKKEYTPFPPPQPESQIDKELASGEYFLKSSQKKRQKMEAIKAKQAEALSKRQEER 311
Query: 309 DAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ AFIPP+E EA +T DVA +
Sbjct: 312 NKAFIPPKEKPVVKPKEASTETKIDVATI 340
>gi|402886888|ref|XP_003906847.1| PREDICTED: KRR1 small subunit processome component homolog [Papio
anubis]
Length = 381
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 180/333 (54%), Positives = 243/333 (72%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVRTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKQQKMEAIKAKQAEAISKK 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEAATETKIDVASI 346
>gi|194853811|ref|XP_001968227.1| GG24622 [Drosophila erecta]
gi|378548393|sp|B3N899.1|KRR1_DROER RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|190660094|gb|EDV57286.1| GG24622 [Drosophila erecta]
Length = 345
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/329 (53%), Positives = 238/329 (72%), Gaps = 5/329 (1%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
DP + W K+ F N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + E
Sbjct: 14 DPVDNAWAMKIPTFREEDNPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAE 73
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV
Sbjct: 74 LDLMEGSMVVRTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLV 133
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M
Sbjct: 134 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMN 193
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFP 261
N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFP
Sbjct: 194 N-VHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFP 252
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
P SK+DK L SGEYFL++ +K++K+ QE+ EKQ E +R+ F+PP E S
Sbjct: 253 PSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESAS 312
Query: 322 NSCEAEDKTNDVAAMAKSLKEKAKKLRKQ 350
+S + ED + K+LK K K K+
Sbjct: 313 SSLKKEDGFSSSKVDVKALKAKLIKANKK 341
>gi|388452386|ref|NP_001252643.1| KRR1 small subunit processome component homolog [Macaca mulatta]
gi|387273299|gb|AFJ70144.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 381
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 243/333 (72%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEALSKK 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|291389602|ref|XP_002711307.1| PREDICTED: HIV-1 rev binding protein 2 [Oryctolagus cuniculus]
Length = 380
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/310 (56%), Positives = 230/310 (74%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 216
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L ++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 217 YNIKTLMIKRELAKDSELRTQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPES 276
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E EA
Sbjct: 277 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKPVVKPKEAS 336
Query: 328 DKTN-DVAAM 336
+T DVAA+
Sbjct: 337 TETKIDVAAI 346
>gi|348580525|ref|XP_003476029.1| PREDICTED: KRR1 small subunit processome component homolog [Cavia
porcellus]
Length = 381
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 181/342 (52%), Positives = 244/342 (71%), Gaps = 9/342 (2%)
Query: 3 ENMEKTVNKKHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFP 57
EN +K + + KPKP + D + D WK F N G+LE SSF+TLFP
Sbjct: 6 ENGRSPAPEKSEFRSRKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFP 65
Query: 58 QYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117
+YRE YL+E WP+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+R
Sbjct: 66 KYREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLAR 125
Query: 118 SVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
SV QA++IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+V
Sbjct: 126 SVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMV 185
Query: 178 QGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 237
QGNTV+A+G F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP
Sbjct: 186 QGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLP 244
Query: 238 KFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 295
+FK KNV ++K K+ YTPFPPP S+IDK L SGEYF+ +K+ +K + +
Sbjct: 245 QFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFMKANQKKRQKMEAIKA 304
Query: 296 KQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
KQAE ++ + +R+ AFIPP+E EA +T DVA +
Sbjct: 305 KQAEALSKRQEERNKAFIPPKEKPAAKPKEAPTETKIDVATI 346
>gi|380809138|gb|AFE76444.1| KRR1 small subunit processome component homolog [Macaca mulatta]
Length = 349
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/313 (56%), Positives = 235/313 (75%), Gaps = 8/313 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ K KP ++D + D WK F N G+LE SSFSTLFP+YRE YL+E
Sbjct: 15 KSEFRNQKTKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFSTLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE T++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEATSKK 313
Query: 305 KRKRDAAFIPPEE 317
+ +R+ AFIPP+E
Sbjct: 314 QEERNKAFIPPKE 326
>gi|449019223|dbj|BAM82625.1| ribosomal RNA assembly protein mis3/dribble/Krr1p [Cyanidioschyzon
merolae strain 10D]
Length = 351
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/323 (55%), Positives = 242/323 (74%), Gaps = 12/323 (3%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
K ++ KPKPWD D +IDHWK + F + G LE SSF+TLFP YRE+YL++ WP+V
Sbjct: 21 KNRYRKPKPWDSD-DIDHWKEDPFSEKDSSGPFLEESSFATLFPAYREQYLRQIWPLVTQ 79
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-M 132
L++ G++CELNL+EG+MTV TTRKT DP+ + +ARD I+LL+RSVP QA +IL DE +
Sbjct: 80 HLQKTGIACELNLIEGTMTVRTTRKTYDPFAVFRARDFIKLLARSVPVQQAARILYDEKL 139
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLK 192
CDIIKI VR+++RF++RR+ L+GPN STLKA+E+LT CY+LVQGNTVAAMG KGLK
Sbjct: 140 YCDIIKISGYVRSRDRFLRRRERLIGPNGSTLKAIELLTNCYVLVQGNTVAAMGDHKGLK 199
Query: 193 QVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK 252
QVRRIVE+CMQN +HP+Y+IK LM+K+EL KDP LA ENW+RFLP+FKK+N K+++ K +
Sbjct: 200 QVRRIVEECMQN-VHPIYNIKRLMIKRELAKDPELAKENWERFLPQFKKRNQKRRRGKHQ 258
Query: 253 E------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKR 306
K Y PFPPP +P KID ++ESGEYFL+E++++ K+ E+ E+++E A +R
Sbjct: 259 TDQQEGGSKAYEPFPPPQRPRKIDLMIESGEYFLTEQQRDQKRKTER-ERKSEAVALERR 317
Query: 307 KRDAAFIPPEEPSRQNSCEAEDK 329
K A + PS + +A +K
Sbjct: 318 KERAKVW--DAPSHEQMAQAREK 338
>gi|16877011|gb|AAH16778.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Homo sapiens]
gi|123993753|gb|ABM84478.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|123993755|gb|ABM84479.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|123993757|gb|ABM84480.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
gi|124000011|gb|ABM87514.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[synthetic construct]
Length = 381
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 180/333 (54%), Positives = 243/333 (72%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YR YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYRGAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|410046996|ref|XP_003952293.1| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
component homolog [Pan troglodytes]
Length = 381
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 180/333 (54%), Positives = 243/333 (72%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEYRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYF +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFXKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>gi|406695196|gb|EKC98508.1| rRNA processing-related protein [Trichosporon asahii var. asahii
CBS 8904]
Length = 366
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/335 (53%), Positives = 236/335 (70%), Gaps = 23/335 (6%)
Query: 2 GENM--EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDP--FWNEGGMLEVSSFSTLFP 57
GE++ E+ VNK + H K KPWD + +IDHWK+E + LE SSF+ LFP
Sbjct: 16 GEDVAVEEQVNKNKR--HRKDKPWDTE-DIDHWKIEPMTAPDAASHTPFLEESSFALLFP 72
Query: 58 QYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117
+YRE YL+ W + L YG+ C L+L+ G M+V TTRKT DPYII KARDL++LL+R
Sbjct: 73 KYREPYLRSVWGQITSTLDSYGLGCTLDLIAGKMSVHTTRKTWDPYIIFKARDLLKLLAR 132
Query: 118 SVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
V APQA+K+L D + CDI+KI +VRNKERFVKRRQ +VGP STLKA+E+LT CY+LV
Sbjct: 133 GVSAPQAMKVLQDGIACDIVKISGIVRNKERFVKRRQRIVGPGGSTLKAIELLTDCYVLV 192
Query: 178 QGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 237
QGNTV+ MGS+KGLK+VRRI+ DCM N +HP+Y IK LM+++EL KDP LANE+WDRFLP
Sbjct: 193 QGNTVSCMGSYKGLKEVRRIIIDCMHN-IHPIYRIKELMIRRELAKDPKLANESWDRFLP 251
Query: 238 KFKKKNVKQKKVKSKEK---------------KPYTPFPPPPQPSKIDKLLESGEYFLSE 282
KF+KK++K + +K+ K YTPFPP P SK+D L++GEYFL
Sbjct: 252 KFQKKHLKTSEKTAKKNAAAGSAAGEPAKKKAKVYTPFPPAPAQSKLDVALQTGEYFLKP 311
Query: 283 RKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
++KE+ E++E+ AEKT + + +R+ AF+ PEE
Sbjct: 312 KEKEAAARAEREERHAEKTEKKRAQREEAFVAPEE 346
>gi|401887035|gb|EJT51041.1| rRNA processing-related protein [Trichosporon asahii var. asahii
CBS 2479]
Length = 366
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/335 (53%), Positives = 236/335 (70%), Gaps = 23/335 (6%)
Query: 2 GENM--EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDP--FWNEGGMLEVSSFSTLFP 57
GE++ E+ VNK + H K KPWD + +IDHWK+E + LE SSF+ LFP
Sbjct: 16 GEDVAVEEQVNKNKR--HRKDKPWDTE-DIDHWKIEPMTAPDAASHTPFLEESSFTLLFP 72
Query: 58 QYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117
+YRE YL+ W + L YG+ C L+L+ G M+V TTRKT DPYII KARDL++LL+R
Sbjct: 73 KYREPYLRSVWGQITSTLDSYGLGCTLDLIAGKMSVHTTRKTWDPYIIFKARDLLKLLAR 132
Query: 118 SVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
V APQA+K+L D + CDI+KI +VRNKERFVKRRQ +VGP STLKA+E+LT CY+LV
Sbjct: 133 GVSAPQAMKVLQDGIACDIVKISGIVRNKERFVKRRQRIVGPGGSTLKAIELLTDCYVLV 192
Query: 178 QGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 237
QGNTV+ MGS+KGLK+VRRI+ DCM N +HP+Y IK LM+++EL KDP LANE+WDRFLP
Sbjct: 193 QGNTVSCMGSYKGLKEVRRIIIDCMHN-IHPIYRIKELMIRRELAKDPKLANESWDRFLP 251
Query: 238 KFKKKNVKQKKVKSKEK---------------KPYTPFPPPPQPSKIDKLLESGEYFLSE 282
KF+KK++K + +K+ K YTPFPP P SK+D L++GEYFL
Sbjct: 252 KFQKKHLKTSEKTAKKNAAAGSAAGEPAKKKAKVYTPFPPAPAQSKLDVALQTGEYFLKP 311
Query: 283 RKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
++KE+ E++E+ AEKT + + +R+ AF+ PEE
Sbjct: 312 KEKEAAARAEREERHAEKTEKKRAQREEAFVAPEE 346
>gi|326911590|ref|XP_003202141.1| PREDICTED: KRR1 small subunit processome component homolog
[Meleagris gallopavo]
Length = 375
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/310 (56%), Positives = 234/310 (75%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 33 DGWKEPAFTREDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALSEHYVNATLDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++IL D++ CDIIKIG+LVRN+E F
Sbjct: 93 SMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQAVRILQDDVACDIIKIGSLVRNRESF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRR L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 153 VKRRGRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFSGLKEVRKVVLDTMKN-IHPI 211
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KDP L +NW+RFLPKFK+KN+K++K K+ YTPFPPP S
Sbjct: 212 YNIKTLMIKRELSKDPELRTQNWERFLPKFKRKNLKKRKEPKKKNIKKEYTPFPPPQPES 271
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQNSCEA 326
+IDK L SGEYFL E +K+ K+ +E + KQA+ + + +R+ AFIPP E+P + +
Sbjct: 272 QIDKELASGEYFLKESQKKRKRVEEIKAKQADAVKKRQEERNKAFIPPKEKPVVKAKKAS 331
Query: 327 EDKTNDVAAM 336
+K D+ A+
Sbjct: 332 TEKKIDIEAI 341
>gi|125985977|ref|XP_001356752.1| GA18062 [Drosophila pseudoobscura pseudoobscura]
gi|54645077|gb|EAL33817.1| GA18062 [Drosophila pseudoobscura pseudoobscura]
Length = 340
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/322 (54%), Positives = 235/322 (72%), Gaps = 7/322 (2%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
DP + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ + E+ + E
Sbjct: 13 DPVDNAWSLKIPAFRQEDNPHGMVEESSFATLFPKYREKYLREVWPLVEQCVAEHQLKAE 72
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D++ CDIIKIGNLV
Sbjct: 73 LDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLV 132
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M
Sbjct: 133 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMN 192
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFP 261
N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPFP
Sbjct: 193 N-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQPKAKKPKKEYTPFP 251
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PS 319
P SKIDK L SGEYFL++ +K++K+ QE+ KQA+ + +R+ F+PP E PS
Sbjct: 252 PAQPESKIDKQLASGEYFLNQEQKQAKRNQERSAKQADAAKKQDERRNKDFVPPTEEAPS 311
Query: 320 RQNSCEAEDKTNDVAAMAKSLK 341
R+ E K + A AK +K
Sbjct: 312 RKRQAEDSSKVDVKALKAKLVK 333
>gi|270005203|gb|EFA01651.1| hypothetical protein TcasGA2_TC007222 [Tribolium castaneum]
Length = 537
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 251/360 (69%), Gaps = 30/360 (8%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F P N G+LE SSF+TLFPQYRE+YL++ WP+V+ LKE+ ++ EL++VEGSMT
Sbjct: 23 KIPEFKPEDNPHGLLEESSFATLFPQYREQYLRQVWPLVQKTLKEHHINAELDVVEGSMT 82
Query: 93 -------------------VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
V TTRKT DPYII+KARD+I+L+SRSVP QA ++L+D++
Sbjct: 83 TLKEHHINAELDVVEGCMTVRTTRKTWDPYIIIKARDMIKLMSRSVPFEQAKRVLNDDVG 142
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKIG + RNKE+FVKRRQ L+GPN TLK++E+LT CY+LVQG TV+A+G +KGL+Q
Sbjct: 143 CDIIKIGKITRNKEKFVKRRQRLIGPNGCTLKSIELLTNCYVLVQGQTVSALGPYKGLQQ 202
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKS 251
VR+IVED M+N MHP+Y+IK LM+KKEL KDP L NENWDRFLP+F KN+ ++ K
Sbjct: 203 VRKIVEDTMKN-MHPIYNIKALMIKKELAKDPKLKNENWDRFLPRFVNKNISKRKQPKKK 261
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
KEKKPYTPFPPP SKIDK L SGEYFL++ +K KK +EK EK A + + KR+ A
Sbjct: 262 KEKKPYTPFPPPQTESKIDKELASGEYFLNKEQKRQKKQKEKNEKHAAAAKKREEKRNEA 321
Query: 312 FIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENINPEEYIAASGEKPSK 371
F+PPEEPS + D+A SLKEK K RK + +E IA G P +
Sbjct: 322 FVPPEEPSTSKQSPNVNTKVDIA----SLKEKIMKARK----DEDESQERIAVKGGFPVR 373
>gi|195148176|ref|XP_002015050.1| GL18627 [Drosophila persimilis]
gi|378548396|sp|B4G9L6.1|KRR1_DROPE RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194107003|gb|EDW29046.1| GL18627 [Drosophila persimilis]
Length = 340
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/322 (54%), Positives = 235/322 (72%), Gaps = 7/322 (2%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
DP + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ + E+ + E
Sbjct: 13 DPVDNAWSLKIPAFRQEDNPHGMVEESSFATLFPKYREKYLREVWPLVEQCVAEHQLKAE 72
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D++ CDIIKIGNLV
Sbjct: 73 LDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLV 132
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M
Sbjct: 133 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMN 192
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFP 261
N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPFP
Sbjct: 193 N-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQPKSKKPKKEYTPFP 251
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PS 319
P SKIDK L SGEYFL++ +K++K+ QE+ KQA+ + +R+ F+PP E PS
Sbjct: 252 PAQPESKIDKQLASGEYFLNQEQKQAKRNQERSAKQADAAKKQDERRNKDFVPPTEEAPS 311
Query: 320 RQNSCEAEDKTNDVAAMAKSLK 341
R+ E K + A AK +K
Sbjct: 312 RKRQAEDSSKVDVKALKAKLVK 333
>gi|374095412|sp|Q3B7L9.2|KRR1_BOVIN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|296488009|tpg|DAA30122.1| TPA: KRR1 small subunit processome component homolog [Bos taurus]
gi|440893371|gb|ELR46169.1| KRR1 small subunit processome component-like protein [Bos grunniens
mutus]
Length = 382
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/290 (58%), Positives = 223/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 216
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 217 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPES 276
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 277 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326
>gi|149742864|ref|XP_001488486.1| PREDICTED: KRR1 small subunit processome component homolog [Equus
caballus]
Length = 380
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 180/333 (54%), Positives = 239/333 (71%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + + KP D D + D WK F N G+LE SSF+TLFP+YRE YL++
Sbjct: 15 KSESRRQNAKPEDRDESELLTVPDGWKEPAFSREDNPRGLLEESSFATLFPKYREAYLKD 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFNGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAVKAKQAEALSKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R AFIPP+E EA +T DVAA+
Sbjct: 314 QEERKKAFIPPKEKPVVKPKEASTETKIDVAAI 346
>gi|17137346|ref|NP_477240.1| dribble [Drosophila melanogaster]
gi|74870304|sp|Q9VPU8.1|KRR1_DROME RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|7296147|gb|AAF51440.1| dribble [Drosophila melanogaster]
gi|17862394|gb|AAL39674.1| LD24634p [Drosophila melanogaster]
gi|220944572|gb|ACL84829.1| dbe-PA [synthetic construct]
gi|220954446|gb|ACL89766.1| dbe-PA [synthetic construct]
Length = 345
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 171/311 (54%), Positives = 232/311 (74%), Gaps = 3/311 (0%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKRRQ L+GPN
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNG 151
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
+TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M N +HP+Y+IK LM+K+EL
Sbjct: 152 ATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNN-VHPIYNIKALMIKREL 210
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYF 279
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SGEYF
Sbjct: 211 MKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGEYF 270
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKS 339
L++ +K++K+ QE+ EKQ E +R+ F+PP E S +S + ED ++ K+
Sbjct: 271 LNQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESAASSRKKEDGSSSSKVDVKA 330
Query: 340 LKEKAKKLRKQ 350
LK K K K+
Sbjct: 331 LKAKLIKANKK 341
>gi|325974458|ref|NP_001038790.2| KRR1 small subunit processome component homolog [Danio rerio]
Length = 376
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 167/290 (57%), Positives = 221/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK KF N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E ++ L+L+EG
Sbjct: 33 DDWKEPKFTKADNPKGLLEESSFATLFPKYREAYLKECWPLVQKALAELFINATLDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILDD+M CDIIKIG LVRN+ERF
Sbjct: 93 SMTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 153 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFNGLKEVRKVVLDTMKN-IHPI 211
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL DP L ++W RFLP F+ K++ ++K K++ YTPFPPP S
Sbjct: 212 YNIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTPFPPPQPES 271
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
KIDK L +GE+FL E +K KK E + KQAE ++ + +R AF+PP+E
Sbjct: 272 KIDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEERKKAFVPPKE 321
>gi|78395091|gb|AAI07827.1| LOC553525 protein, partial [Danio rerio]
Length = 347
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 167/290 (57%), Positives = 221/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK KF N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E ++ L+L+EG
Sbjct: 33 DDWKEPKFTKADNPKGLLEESSFATLFPKYREAYLKECWPLVQKALAELFINATLDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILDD+M CDIIKIG LVRN+ERF
Sbjct: 93 SMTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 153 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFNGLKEVRKVVLDTMKN-IHPI 211
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL DP L ++W RFLP F+ K++ ++K K++ YTPFPPP S
Sbjct: 212 YNIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTPFPPPQPES 271
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
KIDK L +GE+FL E +K KK E + KQAE ++ + +R AF+PP+E
Sbjct: 272 KIDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEERKKAFVPPKE 321
>gi|312375637|gb|EFR22967.1| hypothetical protein AND_13898 [Anopheles darlingi]
Length = 352
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 177/321 (55%), Positives = 240/321 (74%), Gaps = 6/321 (1%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F P N G+LE SSFS LFP+YREKY++E W +V+ AL + + EL+L++G+MT
Sbjct: 29 KIPEFQPSDNPNGLLEESSFSCLFPKYREKYVKECWSLVEKALSSHFIKAELDLIQGNMT 88
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DP+II+KARDLI+LLSRSVP QA+K+L+DE+ CDIIKI NLVRNK++FVKR
Sbjct: 89 VKTTRKTWDPFIILKARDLIKLLSRSVPYEQAVKVLEDEISCDIIKIKNLVRNKDKFVKR 148
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
R L+GPN TLK+LE+LT CY+LVQG TV+A+G +KGL+ VR++VE+ M+N +HP+Y+I
Sbjct: 149 RSRLIGPNGCTLKSLELLTNCYVLVQGATVSAIGPYKGLQCVRKVVEETMKN-IHPIYNI 207
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--KVKSKEKKPYTPFPPPPQPSKID 270
K LM+K+EL KD L ENW+RFLP+F+ KN ++ K+KK YTPFPPP SK+D
Sbjct: 208 KALMIKRELMKDENLREENWERFLPRFQSKNTSKRAKPKVVKKKKDYTPFPPPLLESKVD 267
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED-K 329
K L SGEYFL++ +K +KK QE + K+ E KR+R+ F+ PEEPSR++S + + K
Sbjct: 268 KQLASGEYFLTDEQKTAKKKQEMKAKEKRNETEQKRRREQDFVAPEEPSRKHSTKNDSGK 327
Query: 330 TNDVAAMAKSLKEKAKKLRKQ 350
N++ KSLK K K K+
Sbjct: 328 GNELN--IKSLKGKIAKANKR 346
>gi|426224177|ref|XP_004006250.1| PREDICTED: KRR1 small subunit processome component homolog [Ovis
aries]
Length = 382
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/290 (57%), Positives = 223/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 216
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 217 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPES 276
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
++DK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 277 QVDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326
>gi|109150093|gb|AAI17594.1| Zgc:136398 [Danio rerio]
Length = 376
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 167/290 (57%), Positives = 221/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK KF N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E ++ L+L+EG
Sbjct: 33 DDWKEPKFTKADNPKGLLEESSFATLFPKYREAYLKECWPLVQKALAELFINATLDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILDD+M CDIIKIG LVRN+ERF
Sbjct: 93 SMTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 153 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFNGLKEVRKVVLDTMKN-IHPI 211
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL DP L ++W RFLP F+ K++ ++K K++ YTPFPPP S
Sbjct: 212 YNIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTPFPPPQPES 271
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
KIDK L +GE+FL E +K KK E + KQAE ++ + +R AF+PP+E
Sbjct: 272 KIDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEERKKAFVPPKE 321
>gi|26328295|dbj|BAC27888.1| unnamed protein product [Mus musculus]
Length = 380
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 174/310 (56%), Positives = 229/310 (73%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 215
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFL +FK KNV ++K K+ YTPFPPP S
Sbjct: 216 YNIKTLMIKRELAKDSELRSQSWERFLQQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPES 275
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA
Sbjct: 276 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEAS 335
Query: 328 DKTN-DVAAM 336
+T DVAA+
Sbjct: 336 TETKIDVAAI 345
>gi|354480544|ref|XP_003502466.1| PREDICTED: KRR1 small subunit processome component homolog
[Cricetulus griseus]
Length = 381
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/290 (57%), Positives = 221/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 216
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 217 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSIKKEYTPFPPPQPES 276
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E
Sbjct: 277 QIDKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKE 326
>gi|157823697|ref|NP_001101564.1| KRR1 small subunit processome component homolog [Rattus norvegicus]
gi|118763785|gb|AAI28769.1| Hrb2 protein [Rattus norvegicus]
gi|149066984|gb|EDM16717.1| rCG48818, isoform CRA_a [Rattus norvegicus]
Length = 380
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/290 (57%), Positives = 221/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 215
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 216 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPES 275
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
++DK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E
Sbjct: 276 QVDKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKE 325
>gi|323456010|gb|EGB11877.1| hypothetical protein AURANDRAFT_12957, partial [Aureococcus
anophagefferens]
Length = 272
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 171/271 (63%), Positives = 220/271 (81%), Gaps = 3/271 (1%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++ K KPWD D ++DHWK+E++ P + G LE SSF+TLFP+YRE Y++EAWP+V L
Sbjct: 2 RYRKDKPWDTD-DVDHWKLEEWKPEHSPGAFLEESSFATLFPRYREGYIREAWPIVTRTL 60
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ GV+CELNL+EGSMTV+TTRKT DPY+I+KARDLI+LL+RS+PA QA+KILDD + CD
Sbjct: 61 GKVGVACELNLIEGSMTVATTRKTSDPYVILKARDLIKLLARSIPAAQAMKILDDGVHCD 120
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+IKIG LVRN++RFV+RRQ LVGP+ +TLKALE+LT CY+LVQGNTVA MG KGLK R
Sbjct: 121 VIKIGGLVRNRDRFVRRRQRLVGPDGATLKALELLTECYVLVQGNTVACMGGIKGLKTCR 180
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK-VKSKEK 254
++VE+C +N +HP+Y+IKILM+K+EL DP L E+W+RFLPKF KKNV+ KK +K++
Sbjct: 181 KVVEECFRN-VHPIYNIKILMIKRELANDPELKEEDWERFLPKFAKKNVQTKKPLKTRPT 239
Query: 255 KPYTPFPPPPQPSKIDKLLESGEYFLSERKK 285
K YTPFPP QPSK+D +ESGEYF E K
Sbjct: 240 KAYTPFPPAQQPSKVDLQIESGEYFAPESAK 270
>gi|431892069|gb|ELK02516.1| KRR1 small subunit processome component like protein [Pteropus
alecto]
Length = 380
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 175/313 (55%), Positives = 232/313 (74%), Gaps = 8/313 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP D D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSELRNQKPKPDDRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+ DK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQTDKELASGEYFLKASQKKRQKMEAIKAKQAEVLSKR 313
Query: 305 KRKRDAAFIPPEE 317
+ +R AFIPP+E
Sbjct: 314 QEERKKAFIPPKE 326
>gi|344240571|gb|EGV96674.1| KRR1 small subunit processome component-like [Cricetulus griseus]
Length = 711
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/296 (57%), Positives = 225/296 (76%), Gaps = 4/296 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 216
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 217 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSIKKEYTPFPPPQPES 276
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQN 322
+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP E+P+ Q+
Sbjct: 277 QIDKELASGEYFLKANQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAEQD 332
>gi|353239326|emb|CCA71242.1| probable KRR1-required for 40S ribosome biogenesis [Piriformospora
indica DSM 11827]
Length = 350
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 179/351 (50%), Positives = 236/351 (67%), Gaps = 52/351 (14%)
Query: 2 GENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYRE 61
GE VNK + H K KPWD D +IDH K +L+ T +YRE
Sbjct: 4 GETPTTVVNKNKR--HRKDKPWDTD-DIDHGK----------SNLLQ-----TRTTRYRE 45
Query: 62 KYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPA 121
KYL+E W V AL+ +G++C L+L+ GSM+V TTRKT DPYII+KARD+I+LL+R V
Sbjct: 46 KYLREVWGAVTRALEPHGIACTLDLINGSMSVRTTRKTFDPYIILKARDMIKLLARGVAV 105
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNT 181
QA+KILDD + CDIIKIGN+VRNKERFVKRRQ ++GP+ STLKA+E+LTGCY+LVQGNT
Sbjct: 106 GQAVKILDDAVACDIIKIGNIVRNKERFVKRRQRIIGPDGSTLKAIELLTGCYVLVQGNT 165
Query: 182 VAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKK 241
V+AMG +K LK+VRRIV DCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLPKF+K
Sbjct: 166 VSAMGPYKSLKEVRRIVLDCMKN-IHPIYRIKELMIKRELAKDPKLATESWDRFLPKFRK 224
Query: 242 KNVK--QKKVKSKE-------------------------------KKPYTPFPPPPQPSK 268
+++ +K K +E KK YTPFPPP P K
Sbjct: 225 RHLTSAEKSAKKREAAATKAEARQAAAASSGQPMDVDVHEPPKKKKKVYTPFPPPQLPRK 284
Query: 269 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 319
+D LESGEYFL +KE+++ +++++QAE TA+++ KR A++ PEE +
Sbjct: 285 VDLQLESGEYFLKSSEKEAREAIKRKQQQAEVTAQHQAKRAEAYVAPEETA 335
>gi|224094097|ref|XP_002193046.1| PREDICTED: KRR1 small subunit processome component homolog
[Taeniopygia guttata]
Length = 386
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 171/310 (55%), Positives = 234/310 (75%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 43 DGWKEPAFTREDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALGEHYVNAALDLIEG 102
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++IL D++ CDIIKIG+LVR +E F
Sbjct: 103 SMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQAVRILQDDVACDIIKIGSLVRKRETF 162
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
+KRR L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 163 IKRRARLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFSGLKEVRKVVLDTMKN-IHPI 221
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KDP L ++W+RFLPKFK+KN+K++K K+ YTPFPPP S
Sbjct: 222 YNIKTLMIKRELAKDPELRTQSWERFLPKFKRKNLKKRKEPKKKNTKKEYTPFPPPQPES 281
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQNSCEA 326
++DK L SGEYFL ER+K+ K+ +E + KQA+ + +R+ AFIPP E+P+ + +
Sbjct: 282 QVDKELASGEYFLKERQKKRKQMEEIKAKQADAVKRRQEERNKAFIPPKEKPAVKTKKAS 341
Query: 327 EDKTNDVAAM 336
+K D+ A+
Sbjct: 342 TEKKIDIEAI 351
>gi|73977410|ref|XP_851876.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Canis lupus familiaris]
Length = 380
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 229/307 (74%), Gaps = 6/307 (1%)
Query: 16 KHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVK 72
K KP+ DE + D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+
Sbjct: 21 KQPKPEKRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQ 80
Query: 73 GALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM 132
AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++
Sbjct: 81 KALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDV 140
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLK 192
CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+ +G F GLK
Sbjct: 141 ACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSVIGPFSGLK 200
Query: 193 QVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK 252
+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K
Sbjct: 201 EVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKK 259
Query: 253 EKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 310
+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+
Sbjct: 260 KTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNK 319
Query: 311 AFIPPEE 317
AFIPP+E
Sbjct: 320 AFIPPKE 326
>gi|74147291|dbj|BAE27537.1| unnamed protein product [Mus musculus]
Length = 389
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 168/290 (57%), Positives = 221/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 215
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 216 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPES 275
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E
Sbjct: 276 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKE 325
>gi|432959058|ref|XP_004086167.1| PREDICTED: KRR1 small subunit processome component homolog [Oryzias
latipes]
Length = 381
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 176/323 (54%), Positives = 234/323 (72%), Gaps = 6/323 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL + + L+L+EG
Sbjct: 36 DGWKEPAFSREDNPRGLLEESSFATLFPKYREAYLKECWPLVEKALGDSHIKASLDLIEG 95
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPY IV+ARDLI+LL+RSVP QA++IL D+M CDIIKIG +VRN+ERF
Sbjct: 96 SMTVCTTKKTFDPYAIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGTMVRNRERF 155
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G + GLK+VR++V D M+N +HP+
Sbjct: 156 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPYNGLKEVRKVVMDTMKN-IHPI 214
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL +DP L +NW+RF+PKF+ KN+ ++K K+ YTPFPP S
Sbjct: 215 YNIKTLMIKQELSRDPELRTQNWERFMPKFRHKNLSKRKEPKKKSVKKEYTPFPPSQPES 274
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQNSCEA 326
KIDK L +GE+FL E K+ KK +E + KQAE + + +R+ AFIPP E+P + S +A
Sbjct: 275 KIDKELATGEFFLRESVKKRKKMEEIKVKQAEVLTKRQEERNKAFIPPKEKPLMKKSAKA 334
Query: 327 --EDKTNDVAAMAKSLKEKAKKL 347
E K + A K K K K+L
Sbjct: 335 STEAKLDIEAIKDKVRKAKTKRL 357
>gi|83715980|ref|NP_001032908.1| KRR1 small subunit processome component homolog [Bos taurus]
gi|78174356|gb|AAI07551.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Bos taurus]
Length = 382
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 168/290 (57%), Positives = 222/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F LK+VR++V D M+N +HP+
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSVLKEVRKVVLDTMKN-IHPI 216
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 217 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPES 276
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 277 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326
>gi|449272282|gb|EMC82271.1| KRR1 small subunit processome component like protein, partial
[Columba livia]
Length = 353
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 171/310 (55%), Positives = 234/310 (75%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 11 DGWKEPAFTREDNPKGLLEESSFATLFPKYREAYLKECWPLVQKALDEHYVNATLDLIEG 70
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY I++ARDLI+LL+RSVP Q +IL D++ CDIIKIG+LVR ++ F
Sbjct: 71 SMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQVFRILQDDVACDIIKIGSLVRKRDTF 130
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
+KRR L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 131 IKRRGRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFSGLKEVRKVVLDTMKN-IHPI 189
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KDP L +++W+RFLPKFK+KN+K++K K+ YTPFPPP S
Sbjct: 190 YNIKTLMIKRELAKDPELRSQSWERFLPKFKRKNLKKRKEPKKKNTKKEYTPFPPPQPES 249
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSRQNSCEA 326
+IDK L SGEYFL ER+K+ K+ +E + KQA+ T + + +R+ AFIPP E+P + +
Sbjct: 250 QIDKELASGEYFLKERQKKRKRMEEIKAKQADATKKRQEERNKAFIPPKEKPVVKTKKAS 309
Query: 327 EDKTNDVAAM 336
+K D+ A+
Sbjct: 310 TEKKVDIEAI 319
>gi|390350177|ref|XP_786725.2| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
component homolog [Strongylocentrotus purpuratus]
Length = 352
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 176/335 (52%), Positives = 240/335 (71%), Gaps = 9/335 (2%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G+ SSF+TLFP+YREKYL+E W +V+ L E+G+ L+L+EGSMTV TTR+T D
Sbjct: 23 NPHGLAGESSFATLFPKYREKYLKECWLLVQKTLSEHGIKANLDLIEGSMTVKTTRQTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
P+II+KARD+I+LL+RSVP QA++IL+D++ ++IKIG +VRN+ERFVKRRQ L+GPN
Sbjct: 83 PFIIIKARDMIKLLARSVPFEQAMRILEDDVSAEVIKIGRMVRNRERFVKRRQRLIGPNG 142
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
STLKA+E+LT CYI+VQGNTV+A+G KGL+ V +IV D + N +HP+Y+IK+LM+K+EL
Sbjct: 143 STLKAIELLTNCYIMVQGNTVSAVGPHKGLRDVNKIVTDTLNN-VHPIYNIKVLMIKREL 201
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKKVKSK--EKKPYTPFPPPPQPSKIDKLLESGEYF 279
KD L +E+WDRFLPKF+ KN+K++K K +KK YTPFPP +KIDK L +GEYF
Sbjct: 202 MKDDKLKSESWDRFLPKFRTKNLKKRKRPQKIGKKKEYTPFPPQQPETKIDKELATGEYF 261
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEA--EDKTNDVAAMA 337
L E +K++K QEK+ KQAE + K KR+ FIPP+EP+ + A D DV A
Sbjct: 262 LRENQKKAKVRQEKRIKQAEAEVKRKDKREKPFIPPKEPTISETKPAPKPDSKIDVNA-- 319
Query: 338 KSLKEKAKKLRKQKFAENINPEEYIAASGEKPSKK 372
K K K+ + +KF +++ K KK
Sbjct: 320 --FKAKIKQSQSKKFRQSVTKSTLTTPGSTKKKKK 352
>gi|291230085|ref|XP_002735003.1| PREDICTED: dribble-like, partial [Saccoglossus kowalevskii]
Length = 336
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 169/316 (53%), Positives = 233/316 (73%), Gaps = 5/316 (1%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WK F N GM+ SSF+TLFP+YREKYLQE WP V+ L ++ + L+++EGSM
Sbjct: 19 WKETPFTKDDNPHGMVSESSFATLFPKYREKYLQECWPFVEKTLSDHNIKASLDVIEGSM 78
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV+TTRKT DP+IIVKARD+I+LL+RSVPA QA+++L+D M +IIKIG+LVRNKERFVK
Sbjct: 79 TVTTTRKTWDPFIIVKARDMIKLLARSVPAEQAVRVLEDGMAAEIIKIGSLVRNKERFVK 138
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RRQ L+GPN STLKA+E+LTGCY++VQGNTVAA+G + GLK VR++ D M+N +HP+Y+
Sbjct: 139 RRQRLIGPNGSTLKAIELLTGCYVMVQGNTVAALGPYNGLKHVRKLATDTMKN-VHPIYN 197
Query: 212 IKILMVKKELEKDPALANENWDRFLPKF--KKKNVKQKKVKSKEKKPYTPFPPPPQPSKI 269
IK LM+K+EL KD L NE+WDRFLP F K ++ +++ K + KK YTPFPPP SK+
Sbjct: 198 IKTLMIKRELSKDEQLKNESWDRFLPNFHPKSQSKRKQPKKKRTKKQYTPFPPPQPESKL 257
Query: 270 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEP--SRQNSCEAE 327
DK + SGEYF+ E ++++K +E++++ E + + +R+ FIPP+EP +Q S + E
Sbjct: 258 DKEIASGEYFMKEHQRKAKLREERKQRHVEADVKRQERRNKPFIPPKEPVVKKQKSEQPE 317
Query: 328 DKTNDVAAMAKSLKEK 343
+ + A LK K
Sbjct: 318 KTSTKIDIEALKLKIK 333
>gi|71896953|ref|NP_001025915.1| KRR1 small subunit processome component homolog [Gallus gallus]
gi|53131247|emb|CAG31803.1| hypothetical protein RCJMB04_11h12 [Gallus gallus]
Length = 381
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 173/313 (55%), Positives = 230/313 (73%), Gaps = 6/313 (1%)
Query: 10 NKKHKGKHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
N + GK K DE + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 10 NVRRPGKKKAVKAVDESELLTVPDGWKEPAFTREDNPRGLLEESSFATLFPKYREAYLKE 69
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV+TT+KT DPY I++ARDLI+LL+RSVP QA++
Sbjct: 70 CWPLVQKALSEHYVNATLDLIEGSMTVTTTKKTFDPYAIIRARDLIKLLARSVPFEQAVR 129
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRN+E FVK +GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 130 ILQDDVACDIIKIGSLVRNRESFVKEEDDFLGPKGSTLKALELLTNCYIMVQGNTVSALG 189
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +NW+RFLPKFK+KN+K+
Sbjct: 190 PFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELSKDPELRTQNWERFLPKFKRKNLKK 248
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL E +K+ K+ +E + KQA+ +
Sbjct: 249 RKEPKKKNIKKEYTPFPPPQPESQIDKELASGEYFLKESQKKRKRVEEIKAKQADAVKKR 308
Query: 305 KRKRDAAFIPPEE 317
+ +R+ AFIPP+E
Sbjct: 309 QEERNKAFIPPKE 321
>gi|281351734|gb|EFB27318.1| hypothetical protein PANDA_009447 [Ailuropoda melanoleuca]
Length = 306
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 169/290 (58%), Positives = 222/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ +S L+L+EG
Sbjct: 10 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHISATLDLIEG 69
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 70 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 129
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CYI+VQGNTV+ +G F GLK+VR++V D M+N +HP+
Sbjct: 130 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSVIGPFSGLKEVRKVVLDTMKN-IHPI 188
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ--KKVKSKEKKPYTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV + + K KK YTPFPPP S
Sbjct: 189 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKCKEPKKKTVKKEYTPFPPPQPES 248
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 249 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 298
>gi|118789667|ref|XP_317574.3| AGAP007912-PA [Anopheles gambiae str. PEST]
gi|116123327|gb|EAA12217.4| AGAP007912-PA [Anopheles gambiae str. PEST]
Length = 348
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 177/339 (52%), Positives = 237/339 (69%), Gaps = 16/339 (4%)
Query: 24 DEDPNIDHW----------KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
D+ I+H+ K+ +F P N G+LE SSFS LFP+YREKY++E WP+V
Sbjct: 10 DQTAGIEHFDGPVENAWLLKIPEFKPEDNPNGLLEESSFSCLFPKYREKYIKECWPLVVK 69
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL + + +L+L+ G+MTV TTRKT DPYII+KARDLI+LLSRSVP QA+K+L+DE+
Sbjct: 70 ALSTHHIKADLDLILGNMTVRTTRKTWDPYIILKARDLIKLLSRSVPFEQAVKVLEDEIG 129
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIK+ NLV NKE+FVKRR L+GPN TLK+LE+LT CY+LVQG TV+A+G +KGL+
Sbjct: 130 CDIIKVKNLVANKEKFVKRRSRLIGPNGCTLKSLELLTNCYVLVQGATVSAIGPYKGLQC 189
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 253
VR++VE+ M+N +HP+Y+IK LM+K+EL KD L ENW+RFLP+F+ KN ++
Sbjct: 190 VRKVVEETMKN-IHPIYNIKALMIKRELMKDENLREENWERFLPRFQSKNTTKRNKPKVV 248
Query: 254 KKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
KK YTPFPPP Q SKIDK L SGEYFL++ +K SKK QE+ +K+ K +R+
Sbjct: 249 KKKKEYTPFPPPLQDSKIDKQLASGEYFLTDEQKRSKKRQEQVDKEKRDATVQKERRERD 308
Query: 312 FIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQ 350
F+ PEE +R+ A+ + D KSLK K K K+
Sbjct: 309 FVAPEETNRRT---AKANSADTPLDVKSLKGKIAKANKR 344
>gi|296212420|ref|XP_002752822.1| PREDICTED: KRR1 small subunit processome component homolog isoform
1 [Callithrix jacchus]
Length = 380
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/310 (56%), Positives = 232/310 (74%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALIEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIRLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 216
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 217 YNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPES 276
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E +A
Sbjct: 277 QIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPVVKPKKAS 336
Query: 328 DKTN-DVAAM 336
+T DVA++
Sbjct: 337 TETKIDVASI 346
>gi|198418943|ref|XP_002125952.1| PREDICTED: similar to KRR1 protein [Ciona intestinalis]
Length = 333
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 187/320 (58%), Positives = 239/320 (74%), Gaps = 4/320 (1%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WK +F P N+ GML+ SSF+TLFP+YREKYLQE W +VK L EY + L+L+EGSM
Sbjct: 14 WKEPEFKPEDNKHGMLDESSFATLFPKYREKYLQECWTIVKNKLSEYKIEGILDLIEGSM 73
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV T+R+T DPY I+ ARDLI++L+RSVP QA++I +D CDIIKIG++VRN+ERFVK
Sbjct: 74 TVKTSRRTWDPYAILNARDLIKMLARSVPIEQAVRIFEDNTFCDIIKIGSMVRNRERFVK 133
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RRQ LVGPN +TLKALE+LTGCYILVQGNT +GS GLK+ R+++ D M+N +HPVY+
Sbjct: 134 RRQRLVGPNGATLKALELLTGCYILVQGNTTTVLGSHAGLKEARKVILDTMKN-IHPVYN 192
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDK 271
IK LM+K+EL KDP L NE+WDRFLPKFK+KNVKQK+ KEKKPYTPFPPP SK+DK
Sbjct: 193 IKSLMIKRELSKDPNLKNESWDRFLPKFKRKNVKQKRKPRKEKKPYTPFPPPQPESKVDK 252
Query: 272 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN 331
+ SGEYFL E +++ KK +E++EKQ T+E K+KR + IPP+E + E T
Sbjct: 253 EIASGEYFLKEAERKRKKDEERKEKQGVATSERKQKRARSLIPPQEKKVE---EKTSVTK 309
Query: 332 DVAAMAKSLKEKAKKLRKQK 351
DV +K K KL+ +K
Sbjct: 310 DVDVEILKMKVKQSKLKTRK 329
>gi|156085547|ref|XP_001610183.1| Ribosomal RNA assembly protein mis3 [Babesia bovis T2Bo]
gi|154797435|gb|EDO06615.1| Ribosomal RNA assembly protein mis3, putative [Babesia bovis]
Length = 342
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 179/315 (56%), Positives = 231/315 (73%), Gaps = 3/315 (0%)
Query: 11 KKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
+K+ K+ + KPWD D IDHWKVE F N+ +LE SSF TLFP+YREKY+Q W
Sbjct: 4 RKNHNKYRRDKPWD-DETIDHWKVESFTEEDNKPPLLEESSFVTLFPKYREKYIQSIWGD 62
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
VK AL Y + CEL+LVEGSM+V TT+KT DPYII+KARD+I+L++RSVP QA +IL+D
Sbjct: 63 VKRALGNYHIKCELDLVEGSMSVLTTKKTWDPYIIIKARDMIKLIARSVPFHQAKRILED 122
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 190
+ CDI+KIG ++RNK++F+KRRQ LVGP STLKALE+LT CYIL QG TV+ +GS KG
Sbjct: 123 GVYCDIVKIGGMLRNKDKFIKRRQRLVGPGGSTLKALELLTQCYILTQGQTVSIIGSIKG 182
Query: 191 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 250
+K RRIVEDCM+N +HPVYHIK LM+K+ELEKD L ENWDRFLP+FKK++VK++K +
Sbjct: 183 IKIARRIVEDCMKN-IHPVYHIKELMIKRELEKDEKLKGENWDRFLPQFKKRSVKRRKTQ 241
Query: 251 SKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 310
K+KK P P K D LLESGEYFL E +++ + K +Q K EN++K+ A
Sbjct: 242 VKKKKSSGLLLPEQTPRKEDLLLESGEYFLLEEERQRRNRMNKLAEQHSKGLENRKKKAA 301
Query: 311 AFIPPEEPSRQNSCE 325
A+ PE+ + S E
Sbjct: 302 AY-DPEQNTTSESVE 315
>gi|289740429|gb|ADD18962.1| rRNA processing protein [Glossina morsitans morsitans]
Length = 341
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/284 (58%), Positives = 216/284 (76%), Gaps = 5/284 (1%)
Query: 37 FDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTT 96
F P N ++E S F+T+FP+YREKYL+E WP+V+ L E+ + ELNL+EGSMTV TT
Sbjct: 25 FKPEHNTQSLIEESCFATVFPKYREKYLKEVWPLVQQCLTEHFLKAELNLIEGSMTVKTT 84
Query: 97 RKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHL 156
RKT DPYII+KARD+I+L++RSVP Q+ ++L DE+ CDIIKIG+LVR KE+F+KRRQ L
Sbjct: 85 RKTWDPYIIIKARDMIKLMARSVPFEQSKRVLQDEIGCDIIKIGSLVRKKEKFIKRRQRL 144
Query: 157 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILM 216
+GPN +TLK++E+LT CY+LVQGNTVAA+G +KGL+ VR IV D M N +HP+Y++K LM
Sbjct: 145 IGPNGATLKSIELLTDCYVLVQGNTVAALGPYKGLQHVRDIVLDTMNN-VHPIYNVKALM 203
Query: 217 VKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSKEKKPYTPFPPPPQPSKIDKLL 273
+K+EL KD LA+E+W RFLPKFK KNV +Q K+K K K Y+PFPP SKIDK L
Sbjct: 204 IKRELMKDAQLAHEDWSRFLPKFKNKNVSKRQQPKLK-KGKDDYSPFPPQRLESKIDKKL 262
Query: 274 ESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
SGEYFL++ ++ +K E+ KQAE + K KR A FIPP E
Sbjct: 263 ASGEYFLNKEQQYQRKQHERAAKQAETVQKQKEKRQANFIPPAE 306
>gi|399217414|emb|CCF74301.1| unnamed protein product [Babesia microti strain RI]
Length = 367
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 177/297 (59%), Positives = 217/297 (73%), Gaps = 6/297 (2%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGML-EVSSFSTLFPQYREKYLQE 66
TVNK K + DKP WD D NIDHW+++ F P N GG E SSF+TLFP+YREKY+Q
Sbjct: 21 TVNKNKKYRRDKP--WD-DENIDHWEIQPFKPEDNLGGHFAEESSFATLFPKYREKYIQS 77
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
W VK L E+ + C L+LVEGSM+V T++KT DPYII+KARD+I+LL+RSVP QA K
Sbjct: 78 IWADVKKCLGEHNIRCNLDLVEGSMSVYTSKKTWDPYIIIKARDMIKLLARSVPFAQARK 137
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D + CDI+KIG L+RNKE+FVKRRQ LVGP +TLKALEILT CYIL QG TV+ MG
Sbjct: 138 ILLDGVYCDIVKIGGLIRNKEKFVKRRQRLVGPGGTTLKALEILTECYILTQGQTVSIMG 197
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
FKG+K RRIVEDCM+N +HPVYHIK LM+K+EL KD L NENWDRFLP+FKK+NV Q
Sbjct: 198 PFKGVKLARRIVEDCMRN-IHPVYHIKELMIKRELNKDENLKNENWDRFLPQFKKRNV-Q 255
Query: 247 KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 303
+K +KK P P K D +LE+GEYFL E ++ K +EK+ ++ K E
Sbjct: 256 RKKFKSKKKNSNSIIPDQTPRKEDIMLETGEYFLKEHVRKEKALKEKKRRKTIKLEE 312
>gi|195470375|ref|XP_002087483.1| GE15854 [Drosophila yakuba]
gi|378548399|sp|B4P2Y8.1|KRR1_DROYA RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194173584|gb|EDW87195.1| GE15854 [Drosophila yakuba]
Length = 344
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 231/310 (74%), Gaps = 6/310 (1%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G++E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGVVEESSFATLFPKYRERYLKEVWPLVEQCLSEHHLKAELDLMEGSMVVKTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKRRQ L+GPN
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNG 151
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
+TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M N +HP+Y+IK LM+K+EL
Sbjct: 152 ATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNN-VHPIYNIKALMIKREL 210
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYF 279
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SGEYF
Sbjct: 211 MKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGEYF 270
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN---DVAAM 336
L++ +K++K+ Q + EKQ E +R+ F+PP E S +S + ED ++ DV A+
Sbjct: 271 LNQEQKQAKRNQGRTEKQKEAAKRQDERRNKDFVPPTEESAASSRKKEDGSSTKVDVKAL 330
Query: 337 AKSLKEKAKK 346
L + KK
Sbjct: 331 KAKLIKANKK 340
>gi|67607248|ref|XP_666799.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657852|gb|EAL36562.1| hypothetical protein Chro.30334, partial [Cryptosporidium hominis]
Length = 343
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 183/322 (56%), Positives = 236/322 (73%), Gaps = 9/322 (2%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR 60
+G ME K ++ K KPWD D +IDHW V K P N G+LE SSF+ LFP+YR
Sbjct: 3 VGTPMENQEIISKKRRYRKDKPWDTD-DIDHWNVPKLTPEDNPHGLLEESSFAVLFPKYR 61
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKYL++ WP ++ ALK + + CEL+LVEGS+TV TT KT DP+II++ARD+++LLSRSVP
Sbjct: 62 EKYLRDIWPDIRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARDMVKLLSRSVP 121
Query: 121 APQAIKIL-----DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYI 175
QA++IL D+ + CDIIKIG+ RNKE+ VKRRQ LVGPN STLKA+E+LT CY+
Sbjct: 122 FHQAVRILGDGEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLKAIELLTNCYV 179
Query: 176 LVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRF 235
LVQG TV+ +GS+K LK VRRIVEDCM N +HPVYHIK LM+K+ELEKD L ENWDRF
Sbjct: 180 LVQGQTVSVIGSYKSLKLVRRIVEDCMNN-IHPVYHIKELMIKRELEKDERLRGENWDRF 238
Query: 236 LPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 295
LPKFK K VK+K K +KK + FPP P P K D LLE+GEYF SE ++++K+ +E+
Sbjct: 239 LPKFKNKCVKRKVKKQMKKKNKSIFPPEPTPRKEDMLLETGEYFYSELERKAKQIKERIS 298
Query: 296 KQAEKTAENKRKRDAAFIPPEE 317
+Q EK E ++R+ ++PP E
Sbjct: 299 EQKEKKNEKHKEREKIYVPPNE 320
>gi|225713566|gb|ACO12629.1| KRR1 small subunit processome component homolog [Lepeophtheirus
salmonis]
Length = 349
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 181/335 (54%), Positives = 245/335 (73%), Gaps = 6/335 (1%)
Query: 25 EDPNIDH-WKVE--KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
+D +D+ W +E +F P N GM E S F+TLFP+YREKYL+++WP++ L EY +
Sbjct: 16 QDGIVDNAWAMEVPEFKPEHNPKGMSEESKFATLFPKYREKYLKDSWPLILKTLGEYNLK 75
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+L+EGSM V TTRKT DP+II+KARD+++LL+RSVP A+K+L+DE DIIKIGN
Sbjct: 76 GELDLIEGSMVVKTTRKTWDPFIIIKARDMLKLLARSVPYEHALKVLNDEFGSDIIKIGN 135
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC 201
++ ++RFVKRRQ L+GPN STLK++E+LT CYILVQGNTV+A+G ++GLKQVRRIV D
Sbjct: 136 IIVKRDRFVKRRQRLIGPNGSTLKSIELLTQCYILVQGNTVSAVGPYQGLKQVRRIVIDT 195
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTP 259
M N +HP+Y+IK LM+K+EL KD L NENW+RFLPKF+ +N+ ++K K+KK YTP
Sbjct: 196 MNN-IHPIYNIKALMIKRELMKDEKLKNENWERFLPKFENQNISKRKQPLKKKKKKEYTP 254
Query: 260 FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 319
FPPP SKIDK L +GEYFL E +K+ KK QE++EKQ E T + + KR A+I PEE
Sbjct: 255 FPPPMPESKIDKELATGEYFLKEGEKKLKKLQEQREKQTEATLKRQEKRSKAYIAPEEKE 314
Query: 320 RQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAE 354
+ ED D+ +++K KK +K+K+ E
Sbjct: 315 PKKKHVQEDDFVDLEKFKQNVKSSQKKNKKRKYNE 349
>gi|194758793|ref|XP_001961643.1| GF14827 [Drosophila ananassae]
gi|378548392|sp|B3MM49.1|KRR1_DROAN RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|190615340|gb|EDV30864.1| GF14827 [Drosophila ananassae]
Length = 343
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 163/287 (56%), Positives = 218/287 (75%), Gaps = 3/287 (1%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ F P N GM+E SSF+TLFP+YRE+YL+E WP+V+ + E+ + EL+LVEGSM
Sbjct: 23 KIPSFKPEDNPHGMVEESSFATLFPKYRERYLKEVWPLVEQCVAEHHLKAELDLVEGSMV 82
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V T+RKT DPYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKR
Sbjct: 83 VKTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKR 142
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
RQ L+GPN +TLK++E+LT CY+LVQGNTVAA+G +KGL+QVR IV + M N +HP+Y+I
Sbjct: 143 RQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYKGLQQVRDIVVETMNN-VHPIYNI 201
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKID 270
K LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPFPP SK+
Sbjct: 202 KALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKAKKEYTPFPPAQPESKVG 261
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
K L SGEYFL++ +K++K+ QE+ KQA+ +R+ F+PP E
Sbjct: 262 KQLASGEYFLNKEQKQAKRQQERSAKQADAAKRQDERRNKDFVPPTE 308
>gi|209880169|ref|XP_002141524.1| KH domain-containing protein [Cryptosporidium muris RN66]
gi|209557130|gb|EEA07175.1| KH domain-containing protein [Cryptosporidium muris RN66]
Length = 369
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 188/326 (57%), Positives = 240/326 (73%), Gaps = 11/326 (3%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
K ++ K KPWD D IDHWKV + P N G+LE SSF+ LFP+YREKYL++ WP VK
Sbjct: 24 KKRYRKDKPWDND-TIDHWKVPRLCPEDNPHGLLEESSFAVLFPKYREKYLRDIWPDVKN 82
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL----- 128
ALKEY + CEL+LVEGSMTV TT KT DP+II++ARDLIRLL+RSVP QA++IL
Sbjct: 83 ALKEYQIKCELDLVEGSMTVRTTGKTWDPFIIIRARDLIRLLARSVPFHQAVRILGYGED 142
Query: 129 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF 188
D+ + CDIIKIG+ RNKE+F+KRRQ LVGPN STLKA+E+LT CYILVQG TV+ +G +
Sbjct: 143 DNNLGCDIIKIGH--RNKEKFIKRRQRLVGPNGSTLKAIELLTNCYILVQGQTVSVIGPY 200
Query: 189 KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK 248
KGLKQV RIVEDCM N +HP+YHIK LM+K+ELEKD L NENWDRF+PKFK K ++K
Sbjct: 201 KGLKQVYRIVEDCMNN-IHPIYHIKELMIKRELEKDEKLRNENWDRFIPKFKNK-CIKRK 258
Query: 249 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 308
K + KK + FPP P K D L+ESGEYF +E +++S K E+ +Q EK + K++R
Sbjct: 259 EKKRIKKEKSLFPPEQLPRKEDILIESGEYFANEMERKSIKMNERISRQKEKREQKKKER 318
Query: 309 DAAFIPPEEPSRQNSCEAEDKTNDVA 334
+ FI P++ S++N E ++ V
Sbjct: 319 EKLFI-PQDNSKKNLDEYKEDIKSVV 343
>gi|290562854|gb|ADD38821.1| KRR1 small subunit processome component homolog [Lepeophtheirus
salmonis]
Length = 349
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 180/335 (53%), Positives = 245/335 (73%), Gaps = 6/335 (1%)
Query: 25 EDPNIDH-WKVE--KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
+D +D+ W +E +F P N GM E S F+TLFP+YREKYL+++WP++ L EY +
Sbjct: 16 QDGIVDNAWAMEVPEFKPEHNPKGMSEESKFATLFPKYREKYLKDSWPLILKTLGEYNLK 75
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+L+EGSM V TTRKT DP+II+KARD+++LL+RSVP A+K+L+DE DIIKIGN
Sbjct: 76 GELDLIEGSMVVKTTRKTWDPFIIIKARDMLKLLARSVPYEHALKVLNDEFGSDIIKIGN 135
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC 201
++ ++RFVKRRQ L+GPN STLK++E+LT CY+LVQGNTV+A+G ++GLKQVRRIV D
Sbjct: 136 IIVKRDRFVKRRQRLIGPNGSTLKSIELLTQCYVLVQGNTVSAVGPYQGLKQVRRIVIDT 195
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTP 259
M N +HP+Y+IK LM+K+EL KD L NENW+RFLPKF+ +N+ ++K K+KK YTP
Sbjct: 196 MNN-IHPIYNIKALMIKRELMKDEKLKNENWERFLPKFENQNISKRKQPLKKKKKKEYTP 254
Query: 260 FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 319
FPPP SKIDK L +GEYFL E +K+ KK QE++EKQ E T + + KR A+I PEE
Sbjct: 255 FPPPMPESKIDKELATGEYFLKEGEKKLKKLQEQREKQTEATLKRQEKRSKAYIAPEEKE 314
Query: 320 RQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAE 354
+ ED D+ +++K KK +K+K+ E
Sbjct: 315 PKKKHVQEDDFVDLEKFKQNVKSSQKKNKKRKYNE 349
>gi|240849184|ref|NP_001155707.1| KRR1 small subunit processome component homolog [Acyrthosiphon
pisum]
gi|239788163|dbj|BAH70773.1| ACYPI007346 [Acyrthosiphon pisum]
Length = 291
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 174/290 (60%), Positives = 228/290 (78%), Gaps = 3/290 (1%)
Query: 30 DHWKVE--KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLV 87
+ WK E +F P N G+LE S+F+TLFP+YRE YL+E WP+V+ +L +Y + +L+L+
Sbjct: 3 NAWKTEIPEFRPEDNPHGLLEESAFATLFPKYRETYLKECWPLVQNSLSKYHIKADLDLL 62
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKE 147
EGSM+V TTRKT DP I+KARDLI+LLSRSVP A+++++D+M DIIKIG++VRN++
Sbjct: 63 EGSMSVRTTRKTWDPASILKARDLIKLLSRSVPYEHAVRVMEDDMAADIIKIGSMVRNRD 122
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+FVKRRQ L+GP TLK++E+LT CY+LVQG TVAA+G FKGL+QVRRIV D M+N +H
Sbjct: 123 KFVKRRQRLIGPGGCTLKSIELLTNCYMLVQGQTVAALGPFKGLQQVRRIVTDTMKN-VH 181
Query: 208 PVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPS 267
P+Y+IK LM+K+ELE++P L NENWDRFLP FK KNV +KK K KKPYTPFPP P S
Sbjct: 182 PIYNIKALMIKRELERNPKLKNENWDRFLPNFKPKNVPKKKSTKKPKKPYTPFPPAPAES 241
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
KIDKLLESGEYFL E +K+ +K + K++KQ E + + KR+ AFIPP E
Sbjct: 242 KIDKLLESGEYFLKEDEKQKRKKKVKEDKQKEAKIKREAKRNMAFIPPVE 291
>gi|393246490|gb|EJD53999.1| hypothetical protein AURDEDRAFT_110662 [Auricularia delicata
TFB-10046 SS5]
Length = 390
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/356 (50%), Positives = 239/356 (67%), Gaps = 35/356 (9%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQE 66
VNK + + DKP WD D +ID WK++ F P N G + SSF+TLFP+YREKYL+E
Sbjct: 10 VVNKNKRFRKDKP--WDTD-DIDRWKIDPFKPEDNVAGSFVRESSFATLFPRYREKYLRE 66
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
W AL+ +GV+C L+LV+GSM+V TT KT DPY++ KARD+I+LL+R V QA++
Sbjct: 67 IWGTATRALEGHGVACTLDLVQGSMSVKTTPKTYDPYVLFKARDMIKLLARGVAINQALR 126
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
+L+D + CDIIKIG +VRNKERFVKRRQ ++GP+ STLKA+E+LT CY+LVQGNTV+ +G
Sbjct: 127 VLEDGVACDIIKIGGMVRNKERFVKRRQRIIGPDGSTLKAIELLTECYVLVQGNTVSVLG 186
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK- 245
K LK+VRRIVEDCM+N +HP+Y IK LM+K+EL KDP LA E+WDRFLP+F+K+++
Sbjct: 187 PHKKLKEVRRIVEDCMKN-IHPIYRIKELMIKRELAKDPKLATESWDRFLPQFRKRHLSS 245
Query: 246 -QKKVKSKE----------------------------KKPYTPFPPPPQPSKIDKLLESG 276
QK K +E KK YTPFPPP QP K+D LESG
Sbjct: 246 AQKSAKKRELVAHKEEVQVQAGASTSAGTEGKKEKPKKKVYTPFPPPQQPRKVDLQLESG 305
Query: 277 EYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTND 332
EYFL +++E++ E+++KQ E + +R AF+ PEE + E K D
Sbjct: 306 EYFLKPKEREARVAAERRKKQEEAGERRREERAQAFVAPEEAKERTVDEKRKKRKD 361
>gi|348524604|ref|XP_003449813.1| PREDICTED: KRR1 small subunit processome component homolog
[Oreochromis niloticus]
Length = 386
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 164/290 (56%), Positives = 218/290 (75%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E + L+L+EG
Sbjct: 36 DGWKEPPFTKEDNPRGLLEESSFATLFPKYREAYLKECWPLVEKALGEVHIKPSLDLIEG 95
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPY IV+ARDLI+LL+RSVP QA++IL D+ CDIIKIG +VR++ERF
Sbjct: 96 SMTVCTTKKTFDPYAIVRARDLIKLLARSVPFEQAVRILQDDTACDIIKIGTMVRSRERF 155
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G + GLK+VR++V D M+N +HP+
Sbjct: 156 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPYSGLKEVRKVVLDTMKN-IHPI 214
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KDP L +NW+RFLPKF+ KN+ ++K K+ YTPFPPP S
Sbjct: 215 YNIKTLMIKRELSKDPELRMQNWERFLPKFRHKNLAKRKEPKKKSVKKEYTPFPPPQPES 274
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
K+D+ L +GE+FL E K+ KK +E + KQA + + +R+ AFIPP+E
Sbjct: 275 KVDQELATGEFFLRESVKKRKKMEEIKVKQATALTKKQEERNKAFIPPKE 324
>gi|323509785|dbj|BAJ77785.1| cgd3_2950 [Cryptosporidium parvum]
Length = 302
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 175/298 (58%), Positives = 222/298 (74%), Gaps = 9/298 (3%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR 60
+G ME K ++ K KPWD D +IDHW V K P N G+LE SSF+ LFP+YR
Sbjct: 6 VGTPMENQEIISKKRRYRKDKPWDTD-DIDHWNVPKLTPEDNPHGLLEESSFAVLFPKYR 64
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKYL++ WP ++ ALK + + CEL+LVEGS+TV TT KT DP+II++ARD+++LLSRSVP
Sbjct: 65 EKYLRDIWPDIRNALKAHHIKCELDLVEGSITVRTTGKTWDPFIIIRARDMVKLLSRSVP 124
Query: 121 APQAIKIL-----DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYI 175
QA++IL D+ + CDIIKIG+ RNKE+ VKRRQ LVGPN STLKA+E+LT CY+
Sbjct: 125 FHQAVRILGEGEDDNNLGCDIIKIGH--RNKEKMVKRRQRLVGPNGSTLKAIELLTNCYV 182
Query: 176 LVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRF 235
LVQG TV+ +GS+K LK VRRIVEDCM N +HPVYHIK LM+K+ELEKD L ENWDRF
Sbjct: 183 LVQGQTVSVIGSYKSLKLVRRIVEDCMNN-IHPVYHIKELMIKRELEKDERLRGENWDRF 241
Query: 236 LPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 293
LPKFK K VK+K K +KK + FPP P P K D LLE+GEYF SE ++++K+ +E+
Sbjct: 242 LPKFKNKCVKRKVKKQIKKKNKSIFPPEPTPRKEDMLLETGEYFYSELERKAKQIKER 299
>gi|391344944|ref|XP_003746754.1| PREDICTED: KRR1 small subunit processome component homolog
[Metaseiulus occidentalis]
Length = 280
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 166/275 (60%), Positives = 208/275 (75%), Gaps = 9/275 (3%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
P D DP WKV F N G++ SSF+ LFP+YREKYL+E WP+VK L E+GV
Sbjct: 11 PEDADP----WKVPDFTKDDNPSGVVCESSFAMLFPKYREKYLKEVWPLVKKTLGEHGVE 66
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
EL+++EGSM V TT++ DPYII+KARDLI+LLSRSVP QA +IL+D++ CDIIKIG
Sbjct: 67 AELDVIEGSMIVKTTKQMWDPYIIIKARDLIKLLSRSVPFEQAARILEDDIACDIIKIGG 126
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC 201
+VR K+RFVKRRQ LVGPN +TLKA+EILT CY+LVQGNTV+ +G ++GLKQVR+IVEDC
Sbjct: 127 MVRRKDRFVKRRQRLVGPNGATLKAMEILTDCYVLVQGNTVSTLGPYRGLKQVRKIVEDC 186
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKSKEKKPYT 258
M N +HP+YHIK +M+K+EL KDP L +ENW+RFLPK KN+ KQ +VK + K Y
Sbjct: 187 MNN-IHPIYHIKTMMIKRELAKDPELKDENWERFLPKLVNKNISKRKQPRVK-RTKGEYN 244
Query: 259 PFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 293
PFPP P SKID LE+GEYFL E K +K +E+
Sbjct: 245 PFPPAPPKSKIDTELETGEYFLKEVDKRKRKRKEQ 279
>gi|332020472|gb|EGI60887.1| KRR1 small subunit processome component-like protein [Acromyrmex
echinatior]
Length = 336
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 170/318 (53%), Positives = 240/318 (75%), Gaps = 9/318 (2%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F N +L SSF+T+FP+YRE+YL+E WP+++ AL EY + EL+L+EGSMT
Sbjct: 20 KIPEFKEEDNPHRLLVESSFATMFPKYREQYLKEHWPLIQKALDEYHIKAELDLIEGSMT 79
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYII+KARD+I+L++RSVP QA+K+L D++ DIIKI + VRNKE+FVKR
Sbjct: 80 VKTTRKTWDPYIIIKARDVIKLMARSVPFEQAVKVLQDDITADIIKISSFVRNKEKFVKR 139
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
RQ L+GPN LK++E+LT CY++VQG TV+A+G +KG++QVR+IV+D M+N +HPVY +
Sbjct: 140 RQRLIGPNGCNLKSIELLTNCYVVVQGQTVSALGPYKGVQQVRKIVQDTMKN-VHPVYSL 198
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSKID 270
K LM+K+EL K+P L +ENW+R+LPK+ KN+ +++ K KEKKPYTPFPPP Q SKID
Sbjct: 199 KTLMLKRELSKNPKLKDENWERYLPKYTSKNISKRKEPKKKKEKKPYTPFPPPQQESKID 258
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED-K 329
K + SGEYFL E +K +K+ +E + K E T + + +R AF+PPEE E+E K
Sbjct: 259 KAMASGEYFLKEEQKRAKRKKELEAKHEEATKKRQERRAQAFVPPEE----KPVESETGK 314
Query: 330 TN-DVAAMAKSLKEKAKK 346
TN D+A + + ++++ KK
Sbjct: 315 TNIDIAEIKRKVQQRLKK 332
>gi|225709722|gb|ACO10707.1| KRR1 small subunit processome component homolog [Caligus
rogercresseyi]
Length = 353
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 179/321 (55%), Positives = 237/321 (73%), Gaps = 8/321 (2%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVE--KFDPFWNEGGMLEVSSFSTLFPQ 58
M ++ + N + G ++PK + + W +E +F P N GMLE S F+TLFP+
Sbjct: 1 MSDSEDSYGNHREDGHEEQPKSGVVE---NAWAMEVPEFKPEHNPRGMLEESKFATLFPK 57
Query: 59 YREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
YREKYL+E+WP+V L E+ + EL+L+EGSM V TTRKT DP+II+KARD+++LL+RS
Sbjct: 58 YREKYLKESWPLVVKTLGEHHLKAELDLIEGSMVVKTTRKTWDPFIIIKARDMLKLLARS 117
Query: 119 VPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
VP AIKILDD+ D+IKIGNLV ++RFVKRRQ L+GPN STLK++E+LT CY+LVQ
Sbjct: 118 VPYEHAIKILDDQFGSDVIKIGNLVPKRDRFVKRRQRLIGPNGSTLKSIELLTQCYVLVQ 177
Query: 179 GNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPK 238
GNTVAA+G ++GLKQVRRIV D + N +HP+Y+IK LM+K+EL KD L NENW+RFLPK
Sbjct: 178 GNTVAAVGPYQGLKQVRRIVLDTLNN-IHPIYNIKSLMIKRELMKDENLKNENWERFLPK 236
Query: 239 FKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEK 296
F+ KN+ ++K K+KK YTPFPPP SK+DK L SGEYFL E +K+ KK QE++EK
Sbjct: 237 FENKNISKRKQPLKKKKKKEYTPFPPPMPESKLDKELASGEYFLKESEKKLKKLQERREK 296
Query: 297 QAEKTAENKRKRDAAFIPPEE 317
QAE + + KR A+I P+E
Sbjct: 297 QAEAALKREAKRSKAYIAPDE 317
>gi|388583024|gb|EIM23327.1| ribosomal RNA assembly protein mis3 [Wallemia sebi CBS 633.66]
Length = 382
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 183/346 (52%), Positives = 235/346 (67%), Gaps = 49/346 (14%)
Query: 16 KHDKPKPWDEDPNIDH----WKVEKFDPFWNE----GGMLEVSSFSTLFPQYREKYLQEA 67
++ K K WD + IDH WKV D F NE G E SSF+TLFP+YREKYL+E
Sbjct: 16 RYRKEKAWDHE-GIDHCHYKWKV---DTFTNEDNPAGSFAEESSFATLFPKYREKYLREV 71
Query: 68 WPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKI 127
WP V AL+++G++C L++VEGSMTV TTRKT DPYII+KARDLI+LLSRSVP QA+K+
Sbjct: 72 WPHVTRALEKHGINCVLDMVEGSMTVKTTRKTYDPYIILKARDLIKLLSRSVPFSQAVKV 131
Query: 128 LDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGS 187
L+DE DIIKIG LVRNK+RFVKRRQ ++GPN +TLKA+E+LT CYILVQGNTV+ MG
Sbjct: 132 LEDEYAADIIKIGGLVRNKDRFVKRRQRIIGPNGNTLKAIELLTECYILVQGNTVSVMGP 191
Query: 188 FKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV--- 244
FKGLK VRRI+ DCM N +HP+YHIK LM+K++L +DP LA E+WDRFLP FKK+N
Sbjct: 192 FKGLKNVRRIILDCMNN-VHPIYHIKELMIKRQLAEDPNLAGESWDRFLPSFKKRNQTTS 250
Query: 245 ---------------------------------KQKKVKSKEKKPYTPFPPPPQPSKIDK 271
++ +K+ ++K YTPFPPP QP KID
Sbjct: 251 EKTASKNRKLEHRAEARGMDVDALRQEDAAKERERSHIKADKQKVYTPFPPPQQPKKIDL 310
Query: 272 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+ESGEYFL +K+SK+ +E++ Q E + + K +R + P+E
Sbjct: 311 QIESGEYFLKPYEKKSKEREERKHTQEENSKKRKAERAKDLVAPDE 356
>gi|195388432|ref|XP_002052884.1| GJ19628 [Drosophila virilis]
gi|378548397|sp|B4LTY6.1|KRR1_DROVI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1; AltName:
Full=Protein dribble
gi|194149341|gb|EDW65039.1| GJ19628 [Drosophila virilis]
Length = 343
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/337 (53%), Positives = 239/337 (70%), Gaps = 7/337 (2%)
Query: 18 DKPKPWDEDPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
D P +P + W K+ F N G++E SSF+TLFP+YREKYL+E WP+V+ +
Sbjct: 7 DGPTKQSTEPVDNAWSLKIPTFKAEDNPHGLVEESSFATLFPKYREKYLKEVWPLVQQCV 66
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ + EL+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D++ CD
Sbjct: 67 AEHHLKAELDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCD 126
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR
Sbjct: 127 IIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVR 186
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 255
IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K
Sbjct: 187 DIVLETMNN-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQPKNKKP 245
Query: 256 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
YTPFPP SKIDK L +GEYFL++ +K++KK QE+ KQAE + +R+ F+
Sbjct: 246 KKEYTPFPPAQPESKIDKQLATGEYFLNKEQKQAKKQQERSVKQAEAAKKQDERRNKDFV 305
Query: 314 PPEE--PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLR 348
PP E PS+ AE DV A+ L + KK R
Sbjct: 306 PPTEDAPSQSRKRPAETSKVDVDALKAKLMKANKKNR 342
>gi|307183875|gb|EFN70489.1| KRR1 small subunit processome component-like protein [Camponotus
floridanus]
Length = 305
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 161/278 (57%), Positives = 216/278 (77%), Gaps = 3/278 (1%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N +LE SSF+T+FP+YRE+YL+E W +V+ AL E+ V EL+LVEGSMTV TTRKT D
Sbjct: 24 NPHRLLEESSFATMFPKYREQYLKEHWALVQKALAEHHVKAELDLVEGSMTVKTTRKTWD 83
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYIIVKARD+I+L++RSVP QA+++L D++ D+IKI +LVRNK +FVKRRQ L+GPN
Sbjct: 84 PYIIVKARDMIKLMARSVPFEQAVRVLQDDIAADVIKISSLVRNKAKFVKRRQRLIGPNG 143
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
LK++E+LT CY++VQG TV+A+G +KGL+QVR++VED M+N +HPVY +K LM+K+EL
Sbjct: 144 CNLKSIELLTNCYVVVQGQTVSALGPYKGLQQVRKVVEDTMRN-IHPVYSLKALMLKREL 202
Query: 222 EKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 279
K+P L NENW+++LPK+ KN+ +++ K K KKPYTPFPPP Q SKIDK + SGEYF
Sbjct: 203 AKNPKLKNENWEQYLPKYNSKNISKRKEPKKKKVKKPYTPFPPPQQESKIDKEMASGEYF 262
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
L E +K +K+ +E Q K E + +R AFIPPEE
Sbjct: 263 LKEEQKRAKRRKEYQAKHEEAAKRREERRAQAFIPPEE 300
>gi|396463320|ref|XP_003836271.1| hypothetical protein LEMA_P056120.1 [Leptosphaeria maculans JN3]
gi|312212823|emb|CBX92906.1| hypothetical protein LEMA_P056120.1 [Leptosphaeria maculans JN3]
Length = 341
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 182/304 (59%), Positives = 228/304 (75%), Gaps = 7/304 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H K KPWD D +ID WK+E F P N G + S FSTLFP+YRE+YL+ +W + AL
Sbjct: 5 HKKEKPWDTD-DIDKWKIEPFKPEDNVAGAFTDESRFSTLFPKYREQYLKGSWKFITSAL 63
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ G+ CELNLVEGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQA+KILDD++ D
Sbjct: 64 AKQGIGCELNLVEGSMTVWTTQKTWDPAAILNARDLIKLLARSVPAPQAVKILDDDVAMD 123
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLV NK+RFVKRRQ ++GPN STLKALE+LT Y+LVQGNTVAAMG FKGLK VR
Sbjct: 124 IIKIRNLVGNKDRFVKRRQRILGPNGSTLKALELLTETYLLVQGNTVAAMGPFKGLKTVR 183
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKS 251
RI+ED M N +HP+Y IK LM+KKEL KDP L NE+WDRFLP FKK+++ ++ KV
Sbjct: 184 RIIEDTMHN-IHPIYAIKELMIKKELAKDPELVNESWDRFLPNFKKRSLSKRRVPHKVTD 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP + SK+D +ESGE+FL + KE K +E++EK +K +++R A
Sbjct: 243 KSKKVYTPFPPPQEKSKVDLQIESGEFFLGKHAKERKAREEREEKMKDKMDAKRKERMAE 302
Query: 312 FIPP 315
++ P
Sbjct: 303 YVAP 306
>gi|170593983|ref|XP_001901743.1| Hypothetical 37.2 kDa protein in CHA1-PRD1 intergenic region,
putative [Brugia malayi]
gi|158590687|gb|EDP29302.1| Hypothetical 37.2 kDa protein in CHA1-PRD1 intergenic region,
putative [Brugia malayi]
Length = 350
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 170/325 (52%), Positives = 238/325 (73%), Gaps = 14/325 (4%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G++ SSF+ LFP+YREKY++E WP+++ +E+ + +L+++EG++
Sbjct: 27 WDISTFSKEDNPNGLVCESSFAILFPKYREKYIRECWPLIQKVFEEHFLKADLDVLEGTV 86
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KARD+++L+SRSVP QA+++L D+ +IIKI ++V NKERFVK
Sbjct: 87 VVKTTRKTWDPYIIIKARDVLKLISRSVPYEQAVRVLQDDTASEIIKISSMVANKERFVK 146
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RR L+G +TLKA+E+LT CYI+VQG+TVAA+G ++GLK VR IVEDCM N +HP+Y+
Sbjct: 147 RRARLIGNEGATLKAIELLTKCYIMVQGSTVAAVGPYEGLKHVRMIVEDCMNN-IHPIYN 205
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPP 262
IK LM+K+EL KD L NENWDRFLPKFKKK K+K + K+K YTPFPP
Sbjct: 206 IKTLMIKRELMKDENLKNENWDRFLPKFKKKVQPSQSTNQAKKKKAARWKKKAEYTPFPP 265
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR-Q 321
PP SKIDK LESGEYFLSE+ ++ +K EK+ KQ EKTAE K++R + ++PP+ +R +
Sbjct: 266 PPVMSKIDKQLESGEYFLSEKTRQMEKRNEKRTKQMEKTAERKKQRASEYMPPDGKTRPK 325
Query: 322 NSCEAEDKTNDVAAMAKSLKEKAKK 346
NS + + N+V ++LK+K +K
Sbjct: 326 NSYK---RANEVPIDIENLKKKVRK 347
>gi|322785487|gb|EFZ12156.1| hypothetical protein SINV_05919 [Solenopsis invicta]
Length = 339
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 162/316 (51%), Positives = 235/316 (74%), Gaps = 5/316 (1%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ +F N +LE SSF+T+FP+YRE YL+E WP+++ AL E+ + E++L+EGSMT
Sbjct: 23 KIPEFKETDNPHRLLEESSFATMFPKYREHYLKEHWPLIQKALAEHHIKVEMDLIEGSMT 82
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYI++KARD+I+L++RSVP QA+K+L D++ D+IKI + VRNKE+FVKR
Sbjct: 83 VKTTRKTWDPYIVIKARDMIKLMARSVPFEQAVKVLQDDIAADVIKISSFVRNKEKFVKR 142
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
RQ L+GPN LK++E+LT CY++VQG TV+A+G +KG++QVR++V+D M+N +HPVY +
Sbjct: 143 RQRLIGPNGCNLKSIELLTNCYVVVQGQTVSALGPYKGVQQVRKLVQDTMKN-IHPVYSL 201
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSKID 270
K LM+K+EL K+P L NENW+RFLPK+ KN+ +++ K KEKKPYTPFPPP Q SK+D
Sbjct: 202 KTLMLKRELAKNPTLKNENWERFLPKYNSKNISKRKEPKKKKEKKPYTPFPPPQQESKLD 261
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKT 330
K + SGE+FL E +K +K+ +E++ K E T + +R F+PPEE ++ D
Sbjct: 262 KAMASGEFFLKEEQKRAKRKKEQEAKHEEATKRRQERRAQVFMPPEEKPVESETAKTD-- 319
Query: 331 NDVAAMAKSLKEKAKK 346
D+A + K +++ KK
Sbjct: 320 IDIAEIKKKVQQGLKK 335
>gi|312080672|ref|XP_003142700.1| dribble-PA [Loa loa]
gi|307762133|gb|EFO21367.1| hypothetical protein LOAG_07118 [Loa loa]
Length = 382
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 165/299 (55%), Positives = 221/299 (73%), Gaps = 12/299 (4%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G++ SSF+ LFP+YREKY++E WP+V+ A +E+ + +L+L+EG+M
Sbjct: 27 WDISTFSKEDNPNGLICESSFAILFPKYREKYIRECWPLVQKAFEEHFLKVDLDLLEGTM 86
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KARD+++L+SRSVP QAI++L D+ +IIKI ++V NKERFVK
Sbjct: 87 VVKTTRKTWDPYIIIKARDVLKLISRSVPYEQAIRVLQDDTASEIIKISSMVANKERFVK 146
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RR L+G +TLKA+E+LT CY++VQG+TVAA+G ++GLK VR IVEDCM N +HP+Y+
Sbjct: 147 RRARLIGNEGATLKAIELLTKCYVMVQGSTVAAVGPYEGLKHVRVIVEDCMNN-IHPIYN 205
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP----------YTPFP 261
IK LM+K+EL KD L NENWDRFLPKFKKK V+ ++ ++ KK YTPFP
Sbjct: 206 IKTLMIKRELMKDENLKNENWDRFLPKFKKK-VQPSQLTNQAKKKKAARWKKKAGYTPFP 264
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR 320
PPP SKID+ LESGEYFLSER K+ +K EK+ KQ EKT E K++R + F P+ +R
Sbjct: 265 PPPVMSKIDRQLESGEYFLSERTKQMEKRNEKRTKQLEKTVERKKQRASEFTLPDGKAR 323
>gi|242024225|ref|XP_002432529.1| HIV-1 Rev-binding protein, putative [Pediculus humanus corporis]
gi|212517981|gb|EEB19791.1| HIV-1 Rev-binding protein, putative [Pediculus humanus corporis]
Length = 341
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 167/287 (58%), Positives = 217/287 (75%), Gaps = 3/287 (1%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
KV +F N +LE SSF+TLFP+YRE YL++ WP ++ L EYG+ EL+++EGSM
Sbjct: 22 KVPEFKKEDNPHRLLEESSFATLFPKYREPYLRQYWPQIQKVLNEYGIKGELDVIEGSMK 81
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V TTRKT DPYII+KARD+I+LLSRSVP QAI++L+D++ CDIIKIG+LVRN+E+F+KR
Sbjct: 82 VKTTRKTWDPYIIIKARDMIKLLSRSVPFEQAIRVLEDDIFCDIIKIGSLVRNREKFIKR 141
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
RQ ++GP TLK++E+LT CY+LVQG TVAA+G +KGL +VR IVE M N MHP+Y I
Sbjct: 142 RQRIIGPGGCTLKSIELLTNCYVLVQGQTVAALGPYKGLMEVRSIVEKTMFN-MHPIYKI 200
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKID 270
K LM+K+EL KDP L NENW+RFLPKFK K++ +KK +K+ YTPFPPP SKID
Sbjct: 201 KELMIKRELAKDPILKNENWERFLPKFKNKHLPKKKKPKNKKEKKPYTPFPPPQTESKID 260
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
K LESGEYF++E +K+ K+ +E E+ E + KR FIPPEE
Sbjct: 261 KQLESGEYFMTEAQKQQKRKREINERHEEAKKRREEKRKLPFIPPEE 307
>gi|405964866|gb|EKC30308.1| KRR1 small subunit processome component-like protein [Crassostrea
gigas]
Length = 885
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 168/290 (57%), Positives = 220/290 (75%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK N G++ SSF+TLFP+YRE Y+ E WP+VK L ++ + EL+LVEG
Sbjct: 26 DGWKEPGIAKEQNPHGVVSESSFATLFPKYRENYINECWPLVKKTLGDHNIKAELDLVEG 85
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII+KARDL++LL+RSVP QA+++L+D+ CDIIKIG+L RNKERF
Sbjct: 86 SMTVRTTKKTWDPYIIIKARDLLKLLARSVPYEQAVRVLEDDTACDIIKIGSLTRNKERF 145
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GPN STLKA+EILT CYILVQGNTV+A+G +KGL++VR+IVED M+N +HP+
Sbjct: 146 VKRRQRLIGPNGSTLKAIEILTDCYILVQGNTVSALGPYKGLREVRKIVEDTMKN-IHPI 204
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQP--S 267
Y+IK LM+KKEL KDP L NENW+RF+PKFK KN+ ++K K++ P PP S
Sbjct: 205 YNIKTLMIKKELAKDPELRNENWERFIPKFKSKNISKRKQPKKKRVKKPYTPFPPPQPES 264
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
K+DK L SGEYFL +K++K QEK+EKQ + +++ KR AF+ P+E
Sbjct: 265 KVDKELASGEYFLKPHQKKAKIQQEKKEKQLKAVQKSQEKRAKAFVAPKE 314
>gi|324517589|gb|ADY46864.1| KRR1 small subunit processome component [Ascaris suum]
Length = 358
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 159/298 (53%), Positives = 215/298 (72%), Gaps = 10/298 (3%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G++ SSF++LFP+YREKYL+E WP+V+ + E+ + EL+++EG+M
Sbjct: 34 WDISTFSREDNPSGLVCESSFASLFPKYREKYLRECWPLVQKTMDEHFLKAELDVLEGTM 93
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYI++KARD+++LL+RSVP QAI++L+D++ CDIIKI ++V +KERFVK
Sbjct: 94 VVRTTRKTWDPYILIKARDVLKLLARSVPYEQAIRVLNDDISCDIIKISSMVSSKERFVK 153
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RR LVG N +TLKA+E+LT CY+++QG TVAA+G ++GLK V IVEDCM N +HP+Y+
Sbjct: 154 RRARLVGNNGATLKAIELLTQCYVMIQGGTVAAVGPYQGLKNVHTIVEDCMHN-IHPIYN 212
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP---------YTPFPP 262
IK LM+K+EL KD L NENWDRFLPKFKKK + +KK YTPFPP
Sbjct: 213 IKTLMIKRELMKDDKLKNENWDRFLPKFKKKMQSSQSTNQAKKKKAARWKRKAEYTPFPP 272
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR 320
PP SKIDK LE+GEYF++ER + +K K+ +Q EK E ++ R + F P EE R
Sbjct: 273 PPTMSKIDKQLETGEYFMNERTRLLEKRNAKRARQNEKAVERQQTRASLFTPGEEKPR 330
>gi|157108481|ref|XP_001650245.1| hiv-1 rev binding protein [Aedes aegypti]
gi|108884005|gb|EAT48230.1| AAEL000708-PA [Aedes aegypti]
Length = 349
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 166/299 (55%), Positives = 226/299 (75%), Gaps = 6/299 (2%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G+ E SSFS LFP+YREKY++E WP+V+ AL + + EL+L++G+MTV TTR T D
Sbjct: 38 NPQGLAEESSFSCLFPKYREKYIKECWPLVEKALDGHHLKAELDLIQGNMTVKTTRNTWD 97
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
P+II+KARDLI+LLSRSVP QA+K+LDDE+ CDIIKI NLVRNK +FVKRR L+GPN
Sbjct: 98 PFIILKARDLIKLLSRSVPFEQAVKVLDDEISCDIIKIKNLVRNKAKFVKRRNRLIGPNG 157
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLK+LE+LT CY+LVQG TV+A+G +KGL+ VR++VE+ M+N +HP+Y+IK LM+K+EL
Sbjct: 158 CTLKSLELLTNCYVLVQGATVSAIGPYKGLQCVRKVVEETMKN-IHPIYNIKALMIKREL 216
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYF 279
KD L ENW+RFLPKF+ KN ++K ++KK YTPFPPP SK+DK L SGEYF
Sbjct: 217 MKDDKLKEENWERFLPKFQSKNTTKRKKPKEQKKKKEYTPFPPPLLESKVDKELASGEYF 276
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PSRQNSCEAEDKTNDVAAM 336
L+E +K++K+ QE++EK+ + + K++R+ F+ P+E P + DK DV A+
Sbjct: 277 LTEAQKKAKRMQERREKEQKSSNVQKQRREKDFVAPDESKPKPKGDARNSDKV-DVKAL 334
>gi|145542859|ref|XP_001457116.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424931|emb|CAK89719.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 215/285 (75%), Gaps = 5/285 (1%)
Query: 1 MGENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYR 60
M E E N K K+ K KPWD DP ID WK+ + P G +L SSF+TLFP+YR
Sbjct: 1 MSEQQEGVKNHK---KYRKDKPWDNDPTIDKWKIPEIQPGEMNGSLLAESSFATLFPKYR 57
Query: 61 EKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
EKY+QE + MVK ++K++G+ ELNL+EGS+TV TT KT DP+ I+KARD+I+LL+RSVP
Sbjct: 58 EKYIQEVFGMVKKSMKDHGIRAELNLMEGSLTVKTTNKTWDPWAIMKARDIIKLLARSVP 117
Query: 121 APQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGN 180
Q +++L+D CDIIKI + RNKE+FVKRRQ L+GPN +TLKALE+LT CYI+VQG+
Sbjct: 118 VQQCLRLLEDGTFCDIIKIRSYTRNKEKFVKRRQRLIGPNGATLKALELLTDCYIMVQGS 177
Query: 181 TVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFK 240
TV+ +G++K LK VR++V D MQN +HP+Y IK LM+K+EL KD + NENWDRFLP FK
Sbjct: 178 TVSVIGNWKNLKTVRKVVVDTMQN-VHPIYSIKELMIKRELSKDENMQNENWDRFLPHFK 236
Query: 241 KKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKK 285
K+N +++K K+KK YTPFPP QP K D L+ SGEYFL+E+++
Sbjct: 237 KQN-QKRKKVIKKKKEYTPFPPEQQPRKEDLLMASGEYFLNEKQR 280
>gi|328909187|gb|AEB61261.1| KRR1 small subunit processome component-like protein, partial
[Equus caballus]
Length = 324
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 166/303 (54%), Positives = 221/303 (72%), Gaps = 8/303 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + + KP D D + D WK F N G+LE SSF+TLFP+YRE YL++
Sbjct: 19 KSESRRQNAKPEDRDESELLTVPDGWKEPAFSREDNPRGLLEESSFATLFPKYREAYLKD 78
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 79 CWPLVQKALNEHHVNAALDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 138
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 139 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 198
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 199 PFNGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 257
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L S EYFL +K+ +K + + KQ +++
Sbjct: 258 RKEPKKKTVKKEYTPFPPPQPESQIDKELASCEYFLKASQKKRQKMEAVKAKQQKRSVRG 317
Query: 305 KRK 307
KRK
Sbjct: 318 KRK 320
>gi|403222226|dbj|BAM40358.1| ribosomal RNA assembly protein [Theileria orientalis strain
Shintoku]
Length = 396
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 164/265 (61%), Positives = 203/265 (76%), Gaps = 2/265 (0%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
K+ K KPWD D IDHWK+E F NE ++E SSFS LFP+YREKY+Q W VK L
Sbjct: 9 KYRKDKPWD-DETIDHWKIEPFTQEDNEPSLVEESSFSVLFPKYREKYIQSVWGDVKKCL 67
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+Y + CEL+L+EGSM V T+ KT DPYII+KARD+I+LL+RSVP PQA K+LDD + CD
Sbjct: 68 SQYHIKCELDLLEGSMAVITSSKTWDPYIIIKARDMIKLLARSVPFPQARKVLDDGVFCD 127
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
I+KIG ++RNK++FVKRRQ LVGP STLKALE+LTGCYIL QG TV+ +G +G+K R
Sbjct: 128 IVKIGGILRNKDKFVKRRQRLVGPGGSTLKALELLTGCYILTQGQTVSIVGPIQGIKVAR 187
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 255
RIVEDCM+N +HPVYHIK LM+K+EL+KD L NENW+RFLP+FKK+ VK+KK K +KK
Sbjct: 188 RIVEDCMKN-IHPVYHIKELMIKRELQKDEKLKNENWERFLPQFKKRCVKRKKTKIVKKK 246
Query: 256 PYTPFPPPPQPSKIDKLLESGEYFL 280
T P P K D LLE+GEYF+
Sbjct: 247 SPTLLLPVQTPRKEDILLETGEYFM 271
>gi|392575468|gb|EIW68601.1| hypothetical protein TREMEDRAFT_31674 [Tremella mesenterica DSM
1558]
Length = 395
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 173/341 (50%), Positives = 226/341 (66%), Gaps = 41/341 (12%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDP--FWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+H K KPWD D +IDHWK++ F P + E SSFS LFP+YRE L+ W +
Sbjct: 37 RHRKEKPWDTD-DIDHWKIDPFPPPPVTSHTPFAEESSFSLLFPKYREPKLRTWWGEITS 95
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
LK + CEL+LV+G MTV TTRKT DPY+++K RD+++LL+R V PQ KIL D++
Sbjct: 96 KLKTVELDCELDLVQGKMTVKTTRKTWDPYVVLKGRDMLKLLARGVDPPQVYKILQDDIA 155
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CD+I IG LVRNKERFVKRR ++GPN STLKA+E+LT CY+LVQGNTV+AMGS+KGLK+
Sbjct: 156 CDVIPIGGLVRNKERFVKRRARILGPNGSTLKAIELLTECYVLVQGNTVSAMGSYKGLKE 215
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ------- 246
VRRI+ DCM N +HP+Y IK LM+++EL KDP L NENWDRFLPKF+K+++K
Sbjct: 216 VRRIIVDCMNN-IHPIYRIKELMIRRELAKDPKLVNENWDRFLPKFQKRHLKTSEKTARK 274
Query: 247 ------------------------------KKVKSKEKKPYTPFPPPPQPSKIDKLLESG 276
K + +KK YTPFPPP QPSK+D + SG
Sbjct: 275 NAKLSHPQLNNTNPNAIVIQNDESSQSSQLKTTEKPKKKIYTPFPPPQQPSKLDLQMASG 334
Query: 277 EYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
EYFL +++E+ + + + EKQAEK + K +R+ AFI P E
Sbjct: 335 EYFLKPKEREALEKKRRLEKQAEKAEKKKSEREEAFIAPPE 375
>gi|84994724|ref|XP_952084.1| ribosomal RNA assembly protein [Theileria annulata strain Ankara]
gi|65302245|emb|CAI74352.1| ribosomal RNA assembly protein, putative [Theileria annulata]
Length = 355
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 175/299 (58%), Positives = 220/299 (73%), Gaps = 8/299 (2%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
K+ + KPWD D IDHWK+E F NE ++E SSF LFP+YREKY+Q W VK L
Sbjct: 10 KYRRDKPWDND-TIDHWKIEPFTSEENEPSLVEESSFRILFPKYREKYIQSVWGDVKRCL 68
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+Y ++CEL+L+EGSMTV TT KT DPYII+KARDLI+LL+RSVP PQA +IL+D + CD
Sbjct: 69 SQYHINCELDLLEGSMTVITTNKTWDPYIIIKARDLIKLLARSVPFPQAKRILEDGVYCD 128
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKIG L+RNKE+F+KRRQ LVGP STLKALE+LT CYIL QG TV+A+GS KG+K VR
Sbjct: 129 IIKIGGLIRNKEKFIKRRQRLVGPGGSTLKALELLTECYILTQGQTVSAIGSIKGIKTVR 188
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALAN-----ENWDRFLPKFKKKNVKQKKVK 250
+IVEDC+ N +HPVY+IK L++K+EL K+ L N ENWDRFLP FKK+ VK+KK K
Sbjct: 189 KIVEDCIYN-IHPVYYIKELIIKRELNKNEKLKNVPNPIENWDRFLPHFKKRCVKRKKTK 247
Query: 251 SKEKKPYTP-FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 308
+KK P QP K D LLE+GEYF+ E +++ K+ E++EKQ K E K K+
Sbjct: 248 VVKKKSENALLIPIQQPRKEDILLETGEYFMREEERKRKQQFERREKQKLKHQEKKLKK 306
>gi|380015443|ref|XP_003691711.1| PREDICTED: KRR1 small subunit processome component homolog [Apis
florea]
Length = 340
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 170/304 (55%), Positives = 224/304 (73%), Gaps = 7/304 (2%)
Query: 16 KHDKPKPWDEDPNIDHWKVE--KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
K D PK P + W +E F P N +L+ SSF+TLFP+YRE+YL+E WP+++
Sbjct: 6 KEDAPK--TTGPVDNAWSLEIPSFKPEDNPNRLLQESSFATLFPKYREQYLKEHWPLIQK 63
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL EY + EL+ +EGSMTV TTRKT DPYII+KARD+I+L+SRSVP QAI++L D++
Sbjct: 64 ALDEYAIKAELDFIEGSMTVKTTRKTWDPYIIIKARDMIKLMSRSVPFEQAIRVLQDDIS 123
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
DIIKI + VRN+E+FVKRRQ L+GP TLK++E+LT CY+LVQG TVAA+G ++ L
Sbjct: 124 SDIIKISSFVRNREKFVKRRQRLIGPKGCTLKSIELLTNCYVLVQGQTVAALGPYRSLPL 183
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--KVKS 251
VRRIVED M+N +HP+Y+IK LM+K+EL KDP L NENW+RFLPKF KN+ ++
Sbjct: 184 VRRIVEDTMKN-IHPIYNIKALMIKRELAKDPKLKNENWERFLPKFNSKNINKRKQPKNK 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
KEKKPYTPFPPP Q SKIDK++ +GEYFL+E +K +KK +E+ K E + +R A
Sbjct: 243 KEKKPYTPFPPPQQESKIDKMISTGEYFLNEEQKRAKKKREQDIKHQEAEKRRQERRAQA 302
Query: 312 FIPP 315
F+PP
Sbjct: 303 FVPP 306
>gi|405119935|gb|AFR94706.1| ribosomal RNA assembly protein mis3 [Cryptococcus neoformans var.
grubii H99]
Length = 406
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 150/232 (64%), Positives = 186/232 (80%), Gaps = 4/232 (1%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+H K KPWD D +IDHW +E+F E LE SSF+ LFP+YRE YL+ W +
Sbjct: 26 RHRKDKPWDTD-DIDHWALEEFKAPNPEAHKPFLEESSFALLFPKYREPYLRSVWSSITS 84
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL+ YG++CEL+LV+G MTV TTRKT DPYI+ K RDL++LL+R V APQAIKIL+D +
Sbjct: 85 ALEAYGLACELDLVQGKMTVKTTRKTWDPYIVFKGRDLLKLLARGVNAPQAIKILEDGIA 144
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKIG +VRNKERFVKRRQ +VGPN STLKA+E+LT CY+LVQGNTV+ MGS+KGLK+
Sbjct: 145 CDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQGNTVSVMGSYKGLKE 204
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 245
VRRI+ DCM N +HP+Y IK LM+++EL KDP LANENWDRFLPKF+KK++K
Sbjct: 205 VRRIILDCMNN-IHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHLK 255
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 257 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 316
YTPFPPP QPSK+D L SGEYFL ++KE+ ++K EKQ E E + R+ AF+ P
Sbjct: 326 YTPFPPPQQPSKLDLQLASGEYFLKPKEKEAIDKRKKMEKQKEIAQERRAVREEAFVAPP 385
Query: 317 E 317
E
Sbjct: 386 E 386
>gi|58265972|ref|XP_570142.1| rRNA processing-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134110418|ref|XP_776036.1| 90S preribosome/SSU processome component KRR1 [Cryptococcus
neoformans var. neoformans B-3501A]
gi|50258704|gb|EAL21389.1| hypothetical protein CNBD0850 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226375|gb|AAW42835.1| rRNA processing-related protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 402
Score = 320 bits (821), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 151/232 (65%), Positives = 186/232 (80%), Gaps = 4/232 (1%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+H K KPWD D +IDHW +E+F E LE SSF+ LFP+YRE YL+ W +
Sbjct: 26 RHRKDKPWDTD-DIDHWAMEEFKAPNPETHKPFLEESSFALLFPKYREPYLRSVWSSITS 84
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL+ YG++CEL+LV+G MTV TTRKT DPYII K RDL++LL+R V APQAIKIL+D +
Sbjct: 85 ALEAYGLACELDLVQGKMTVKTTRKTWDPYIIFKGRDLLKLLARGVNAPQAIKILEDGIA 144
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKIG +VRNKERFVKRRQ +VGPN STLKA+E+LT CY+LVQGNTV+ MGS+KGLK+
Sbjct: 145 CDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQGNTVSVMGSYKGLKE 204
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 245
VRRI+ DCM N +HP+Y IK LM+++EL KDP LANENWDRFLPKF+KK++K
Sbjct: 205 VRRIILDCMNN-IHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHLK 255
>gi|340504633|gb|EGR31059.1| ribosomal RNA assembly, putative [Ichthyophthirius multifiliis]
Length = 359
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/308 (53%), Positives = 223/308 (72%), Gaps = 2/308 (0%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWP 69
K K K+ K KPWD DP +D WK+E+F + E SSF+TLFPQYREKY+QE++
Sbjct: 10 TKSKKNKYRKDKPWDNDPTLDKWKIEEFKKGDMPYTLSEESSFATLFPQYREKYIQESFG 69
Query: 70 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129
+K L +YG+ +LNL EGS+TV TT+KT DPY I+KARD I+LL+RSVP QA+++++
Sbjct: 70 NIKKTLNDYGIKADLNLTEGSITVRTTKKTWDPYAIIKARDCIKLLARSVPFQQALRVME 129
Query: 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 189
D + D++KI NLVRNKE+F+KRRQ L+GPN TLKALE+LT CYI+VQG+TV+ +G +K
Sbjct: 130 DGVFSDVVKIRNLVRNKEKFIKRRQRLIGPNGQTLKALELLTECYIMVQGSTVSCIGGWK 189
Query: 190 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV 249
LK +RRI+ED M N +HP+Y+IK LM+KKEL KD L +ENWDRFLP+FKK N K+K+
Sbjct: 190 QLKVLRRIIEDTMHN-IHPIYNIKELMIKKELMKDDKLKDENWDRFLPQFKKINAKKKQK 248
Query: 250 KSKEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 308
K K +K YTPFPP QP KID +++GEYFL E +K+ ++K KQ K + ++
Sbjct: 249 KQKVQKKEYTPFPPEQQPRKIDIEIQTGEYFLKESEKKQNNLKQKIIKQENKIQQKMDQK 308
Query: 309 DAAFIPPE 316
+ PE
Sbjct: 309 SKLYEAPE 316
>gi|321262677|ref|XP_003196057.1| rRNA processing-related protein [Cryptococcus gattii WM276]
gi|317462532|gb|ADV24270.1| rRNA processing-related protein, putative [Cryptococcus gattii
WM276]
Length = 404
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 148/232 (63%), Positives = 185/232 (79%), Gaps = 4/232 (1%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKG 73
+H K KPWD D +IDHW +++F E LE SSF+ LFP+YRE YL+ W +
Sbjct: 26 RHRKDKPWDTD-DIDHWAMDEFKAPNPEAHKPFLEESSFALLFPKYREPYLRSVWSSITS 84
Query: 74 ALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ 133
AL+ YG++CEL+LV+G M V TTRKT DPYI+ K RDL++LL+R V APQAIKIL+D +
Sbjct: 85 ALEAYGLACELDLVQGKMIVKTTRKTWDPYIVFKGRDLLKLLARGVNAPQAIKILEDGIA 144
Query: 134 CDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
CDIIKIG +VRNKERFVKRRQ +VGPN STLKA+E+LT CY+LVQGNTV+ MGS+KGLK+
Sbjct: 145 CDIIKIGGIVRNKERFVKRRQRIVGPNGSTLKAIELLTECYVLVQGNTVSVMGSYKGLKE 204
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 245
VRRI+ DCM N +HP+Y IK LM+++EL KDP LANENWDRFLPKF+KK++K
Sbjct: 205 VRRIILDCMNN-IHPIYRIKELMIRRELAKDPKLANENWDRFLPKFQKKHLK 255
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 257 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 316
YTPFPPP QPSK+D L SGEYFL ++KE+ ++K EKQ E E + R+ AF+ P
Sbjct: 324 YTPFPPPQQPSKLDLQLASGEYFLKPKEKEAIDKRKKMEKQKEVAQERRAVREEAFVAPP 383
Query: 317 E 317
E
Sbjct: 384 E 384
>gi|349806193|gb|AEQ18569.1| hypothetical protein [Hymenochirus curtipes]
Length = 271
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 153/254 (60%), Positives = 201/254 (79%), Gaps = 2/254 (0%)
Query: 65 QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQA 124
+E WP+V+ AL E V EL+L+EGSMTVSTT+KT DPY I++ARDLI+LL+RSVP QA
Sbjct: 1 KECWPLVQKALGESFVKAELDLIEGSMTVSTTKKTYDPYSIIRARDLIKLLARSVPFDQA 60
Query: 125 IKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAA 184
++IL D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A
Sbjct: 61 VRILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSA 120
Query: 185 MGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 244
+G F GLK++R++V + M+N +HP+Y+IK LM+K+EL KDP L ++W+RFLP FK KN+
Sbjct: 121 LGPFNGLKEIRKVVLETMKN-IHPIYNIKALMIKRELAKDPELRTKSWERFLPTFKHKNI 179
Query: 245 -KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 303
K+K+ K K+ YTPFPPP S+IDK L SGEYFL E +K KK +E + KQAE +
Sbjct: 180 SKRKEPKKSVKREYTPFPPPQPESQIDKELASGEYFLKESQKRRKKLEEIKAKQAEAVTK 239
Query: 304 NKRKRDAAFIPPEE 317
+ +R+ AFIPP+E
Sbjct: 240 RQEERNKAFIPPKE 253
>gi|71031110|ref|XP_765197.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352153|gb|EAN32914.1| hypothetical protein, conserved [Theileria parva]
Length = 349
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/275 (60%), Positives = 211/275 (76%), Gaps = 4/275 (1%)
Query: 12 KHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMV 71
+H+ K+ + KPWD+D IDHWK+E F NE ++E SSF LFP+YREKY+Q W V
Sbjct: 7 RHR-KYRRDKPWDDD-TIDHWKIEPFTKEENEPSLVEESSFRILFPKYREKYIQSVWGDV 64
Query: 72 KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE 131
K L +Y ++CEL+L+EGSMTV TT KT DPYII+KARDLI+LL+RSVP PQA +ILDD
Sbjct: 65 KNCLSQYHINCELDLLEGSMTVITTDKTWDPYIIIKARDLIKLLARSVPFPQAKRILDDG 124
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
+ CDIIKIG L+RNK++F+KRRQ LVGP STLKALE+LT CYIL QG TV+ +GS KG+
Sbjct: 125 VYCDIIKIGGLIRNKDKFIKRRQRLVGPGGSTLKALELLTECYILTQGQTVSVIGSIKGI 184
Query: 192 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKS 251
K VR+IVEDC+ N +HPVY+IK L++K+EL K+ L NENWDRFLP+FKK+ VK++KVK
Sbjct: 185 KTVRKIVEDCIYN-IHPVYYIKELIIKRELSKNEKLKNENWDRFLPQFKKRCVKRRKVKV 243
Query: 252 KEKKP-YTPFPPPPQPSKIDKLLESGEYFLSERKK 285
KK + P QP K D LLE+GEYF+ E ++
Sbjct: 244 VRKKKENSLLIPEQQPRKEDILLETGEYFMREEER 278
>gi|118348580|ref|XP_001007765.1| Protein kinase domain containing protein [Tetrahymena thermophila]
gi|89289532|gb|EAR87520.1| Protein kinase domain containing protein [Tetrahymena thermophila
SB210]
Length = 1028
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 162/287 (56%), Positives = 214/287 (74%), Gaps = 10/287 (3%)
Query: 14 KGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGM----LEVSSFSTLFPQYREKYLQEAWP 69
K K+ K KPWD DP +D WK+E F N+G M E SSF+TLFPQYREKY+QE +
Sbjct: 684 KNKYRKDKPWDNDPTLDKWKIEPF----NKGDMSEPLAEESSFATLFPQYREKYIQECFG 739
Query: 70 MVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD 129
VK L EYG+ ELNL EGS+TV TT+KT DPY I+KARD I+LL+RSVP QA+++++
Sbjct: 740 NVKKVLSEYGIKAELNLTEGSITVRTTKKTWDPYAIIKARDCIKLLARSVPFQQALRVME 799
Query: 130 DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 189
D + D++KI +LV+NKE+F+KRRQ L+GPN TLKALE+LT CYI+VQG+TV+ +G ++
Sbjct: 800 DGVFSDVVKIRSLVKNKEKFIKRRQRLIGPNGQTLKALELLTNCYIMVQGSTVSCIGDWR 859
Query: 190 GLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKF-KKKNVKQKK 248
LK +RRIVED M N +HP+Y+IK LM+K+EL KD L NENWDRFLP+F K K+ K
Sbjct: 860 QLKILRRIVEDTMFN-IHPIYNIKELMIKRELAKDEKLKNENWDRFLPQFKKMNVKKKAK 918
Query: 249 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 295
+ EKK YTPFPP QP K D +E+GEYF++E++K++K + K +
Sbjct: 919 KQKVEKKEYTPFPPEQQPRKEDIAMETGEYFMTEKEKKTKDLRNKMQ 965
>gi|440462064|gb|ELQ32475.1| hypothetical protein OOU_Y34scaffold01139g1, partial [Magnaporthe
oryzae Y34]
Length = 251
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/211 (69%), Positives = 181/211 (85%), Gaps = 1/211 (0%)
Query: 34 VEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTV 93
V KF P +G LE SSF+TLFP+YRE+YL+E W V AL ++G++C L+LVEGSMTV
Sbjct: 2 VPKFTPDEIKGPFLEESSFATLFPKYRERYLKEVWGHVTSALDKHGIACTLDLVEGSMTV 61
Query: 94 STTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRR 153
TTRK DPYII+KARD+IRLLSRSVP PQA+KIL+D ++CD+IKIGNL+RNKERFVKRR
Sbjct: 62 KTTRKAYDPYIILKARDMIRLLSRSVPFPQAVKILEDGIECDVIKIGNLLRNKERFVKRR 121
Query: 154 QHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIK 213
Q ++GPN STLKA+E+LTGCY+LVQGNTV+AMG FK LK+VRRIV DC++N +HP+YHIK
Sbjct: 122 QRIIGPNGSTLKAIELLTGCYVLVQGNTVSAMGPFKSLKEVRRIVIDCLKN-VHPIYHIK 180
Query: 214 ILMVKKELEKDPALANENWDRFLPKFKKKNV 244
LM+K+EL KDP LA ENW+RFLPKFKK+N+
Sbjct: 181 ELMIKRELAKDPKLAEENWERFLPKFKKRNM 211
>gi|68531923|ref|XP_723647.1| RNA-binding protein [Plasmodium yoelii yoelii 17XNL]
gi|23478009|gb|EAA15212.1| RNA-binding protein [Plasmodium yoelii yoelii]
Length = 301
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 158/279 (56%), Positives = 203/279 (72%), Gaps = 8/279 (2%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
E+ VNK ++ K KPWD + NIDHWK+EKF N+ LE SSF LFP+YREKYLQ
Sbjct: 7 EENVNKN--KRYRKEKPWDNE-NIDHWKIEKFTKEDNKHHFLEESSFKILFPKYREKYLQ 63
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
+ +K L + + E+NL+EG MTV TT+KT DPYII+KARD+I LLSRSVP A
Sbjct: 64 QFSTDIKNTLHNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPYNHAK 123
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 185
++L+DE+ CDIIKI +RNK +F+KRRQ L+G N++TLKALEILT CYI V G TV +
Sbjct: 124 RVLNDEIFCDIIKISGYIRNKNKFIKRRQRLLGSNATTLKALEILTQCYICVHGKTVCVI 183
Query: 186 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 245
G+FK LK VRRIV DCM+N +HPVYHIK L+ K+ELEK+ L NENW+++LP FKK+NV+
Sbjct: 184 GNFKSLKIVRRIVIDCMKN-IHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQ 242
Query: 246 QKKVK----SKEKKPYTPFPPPPQPSKIDKLLESGEYFL 280
+KK+K +K K + FPP P KID +E+GEYF+
Sbjct: 243 RKKIKQKLENKNGKKKSVFPPDQLPRKIDIQMETGEYFI 281
>gi|340378663|ref|XP_003387847.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Amphimedon
queenslandica]
Length = 269
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 143/216 (66%), Positives = 183/216 (84%), Gaps = 2/216 (0%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD D +IDHW +E+F P N +L+ SSF+TLFP+YREKYLQ+ WP+V+ L ++G+
Sbjct: 23 PWDND-SIDHWTIEEFKPEHNPHSLLDESSFATLFPKYREKYLQKVWPLVQKCLNDHGIK 81
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
+L+L+EGSMTVSTTRKT DPYIIVKARD+I+LL+RSVP QAIKILDD+ CDIIKI +
Sbjct: 82 SQLDLIEGSMTVSTTRKTFDPYIIVKARDMIKLLARSVPYEQAIKILDDDKACDIIKIRS 141
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC 201
LVRNK+RFV+RRQ L+GP+ +TLKA+E+LT CYI+VQG TV+A+G F GLKQ+RR+VED
Sbjct: 142 LVRNKDRFVRRRQRLIGPDGATLKAIELLTQCYIMVQGATVSAIGPFTGLKQLRRVVEDT 201
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 237
M+N +HPVYHIK +M+K+EL KDP+L NE+WDRFLP
Sbjct: 202 MKN-IHPVYHIKTMMIKRELMKDPSLKNESWDRFLP 236
>gi|229367208|gb|ACQ58584.1| KRR1 small subunit processome component homolog [Anoplopoma
fimbria]
Length = 347
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 160/295 (54%), Positives = 213/295 (72%), Gaps = 6/295 (2%)
Query: 58 QYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSR 117
+YRE YL+E WP+V+ AL E + L+L+EGS+TV TT+KT DPY I++AR LI+LL+R
Sbjct: 27 KYREAYLKECWPLVEKALGESHIKTTLDLIEGSITVCTTKKTYDPYAILRARGLIKLLAR 86
Query: 118 SVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILV 177
SVP QA++IL D+M CDIIKIG LVRN+ERFVKRRQ L+GP STLKALE+LT CY++V
Sbjct: 87 SVPFEQAVRILQDDMACDIIKIGTLVRNRERFVKRRQRLIGPKGSTLKALELLTNCYVMV 146
Query: 178 QGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 237
QGNTV+A+G F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L ++W+RFLP
Sbjct: 147 QGNTVSALGPFNGLKEVRKVVMDTMRN-IHPIYNIKTLMIKQELSKDPDLRMQSWERFLP 205
Query: 238 KFKKKNVKQKKV--KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQE 295
KF+ KN+ +++ K KK YTPFPP S +DK L +GE+FL E K+ KK +E +
Sbjct: 206 KFRHKNLAKRREPKKKSTKKEYTPFPPSQPESTVDKELATGEFFLRESVKKRKKMEEIKV 265
Query: 296 KQAEKTAENKRKRDAAFIPPEEP---SRQNSCEAEDKTNDVAAMAKSLKEKAKKL 347
KQAE + + +R+ AFIPP+E + N E K + A K K K KKL
Sbjct: 266 KQAEALTKKQEERNKAFIPPKEKPLMKKTNKAPTEGKLDIEAIKEKVRKAKTKKL 320
>gi|255729762|ref|XP_002549806.1| ribosomal RNA assembly protein mis3 [Candida tropicalis MYA-3404]
gi|240132875|gb|EER32432.1| ribosomal RNA assembly protein mis3 [Candida tropicalis MYA-3404]
Length = 233
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/228 (65%), Positives = 186/228 (81%), Gaps = 4/228 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD P+ID W +E+F P N G+ E SSF TLFP+YRE+YL+ W V A
Sbjct: 5 HNRDKPWDT-PDIDKWALEEFKPEHNTSGLHFAEESSFMTLFPKYREQYLRGIWSDVTKA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L+++ + CELNLVEGSMTV TT KT DP +I+KARDLI+LL+RSVP PQA+KIL D++ C
Sbjct: 64 LEKHFIKCELNLVEGSMTVKTTTKTFDPAMIIKARDLIKLLARSVPFPQAVKILQDDVAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NK+RF+KRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVANKDRFIKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKK 242
RR+VEDCM+N +HP+Y+IK LM+K+EL K+P LANE+W RFLP FKK+
Sbjct: 184 RRVVEDCMKN-IHPIYYIKELMIKQELSKNPDLANEDWSRFLPSFKKR 230
>gi|66813724|ref|XP_641041.1| hypothetical protein DDB_G0280805 [Dictyostelium discoideum AX4]
gi|74855697|sp|Q54UU6.1|KRR1_DICDI RecName: Full=KRR1 small subunit processome component homolog;
AltName: Full=KRR-R motif-containing protein 1
gi|60469063|gb|EAL67060.1| hypothetical protein DDB_G0280805 [Dictyostelium discoideum AX4]
Length = 374
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 160/277 (57%), Positives = 207/277 (74%), Gaps = 3/277 (1%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+ + SSF+TLFP+YREKYLQE W +V+ L E+G+ C+L+L+EGSMTV+TT+K DP I
Sbjct: 54 LYDDSSFATLFPKYREKYLQEIWKLVENVLHEHGIECKLDLIEGSMTVTTTKKCWDPVAI 113
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+KARDLI+LLSRSVP A K+L+D+ CDIIKIG VRNKERFVKRRQ LVGP+ STLK
Sbjct: 114 LKARDLIKLLSRSVPFEHAQKVLNDDYNCDIIKIGGFVRNKERFVKRRQRLVGPDGSTLK 173
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
A+E+LT CY+LVQGNTV+++G + GL QVR+IVEDC++N +HP+Y+IK LM+K+ELEKD
Sbjct: 174 AIELLTKCYVLVQGNTVSSIGPWNGLVQVRKIVEDCLKN-IHPIYNIKELMIKRELEKDE 232
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEK--KPYTPFPPPPQPSKIDKLLESGEYFLSER 283
L NENW+R+LP+FKK N +KK K+K + PF PP P K D +ESGEYF SE
Sbjct: 233 TLKNENWERYLPQFKKTNQNKKKKVQKKKKDRDAAPFAPPQLPRKEDLAMESGEYFASEE 292
Query: 284 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR 320
KK K +++ K AE + K +R + I P E R
Sbjct: 293 KKRRKIQADREAKHAESDQKRKDERQKSQIAPAEKDR 329
>gi|68069899|ref|XP_676861.1| RNA-binding protein [Plasmodium berghei strain ANKA]
gi|56496746|emb|CAH98323.1| RNA-binding protein, putative [Plasmodium berghei]
Length = 291
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/280 (56%), Positives = 203/280 (72%), Gaps = 9/280 (3%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
E+ VNK + + DKP WD + NIDHWK+EKF N+ LE SSF LFP+YRE YLQ
Sbjct: 7 EENVNKNKRYRKDKP--WDNE-NIDHWKIEKFTKEDNKHHFLEESSFKILFPKYRE-YLQ 62
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
+ +K L + + E+NL+EG MTV TT+KT DPYII+KARD+I LLSRSVP A
Sbjct: 63 QFSTDIKNTLHNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPYNHAK 122
Query: 126 KILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 185
++LDDE+ CDIIKI +RNK +F+KRRQ L+G N++TLKALEILT CYI V G TV +
Sbjct: 123 RVLDDEIFCDIIKISGYIRNKNKFIKRRQRLLGSNATTLKALEILTQCYICVHGKTVCVI 182
Query: 186 GSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK 245
G+FK LK VRRIV DCM+N +HPVYHIK L+ K+ELEK+ L NENW+++LP FKK+NV+
Sbjct: 183 GNFKSLKIVRRIVIDCMKN-IHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQ 241
Query: 246 QKKVK----SKEKKPYTPFPPPPQPSKIDKLLESGEYFLS 281
+KK+K +K K + FPP P KID +E+GEYF++
Sbjct: 242 RKKIKQKLENKNGKKKSVFPPDQLPRKIDIQMETGEYFMN 281
>gi|443689552|gb|ELT91925.1| hypothetical protein CAPTEDRAFT_183647 [Capitella teleta]
Length = 330
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/295 (52%), Positives = 220/295 (74%), Gaps = 5/295 (1%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
M + SSF+TLFP+Y+EKY++E WP+V+ LK + + +L++VEGSM+V TTR+T DPYII
Sbjct: 1 MADESSFATLFPKYQEKYIKECWPLVQEKLKSFNIKADLDVVEGSMSVKTTRQTWDPYII 60
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
++ARDLI+LLSRSVP +A+++LDD++ C+II I N+V KER+VKRRQ L+GPN STLK
Sbjct: 61 IRARDLIKLLSRSVPYDKAVRVLDDDVACEIISIKNMVSPKERYVKRRQRLIGPNGSTLK 120
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
A+E+LT CY+ VQG+TVAA+G + GLK VR IV DCM+N +HP+Y+IK M+K ELEKDP
Sbjct: 121 AIELLTSCYVTVQGSTVAAIGKYSGLKFVRSIVTDCMKN-VHPIYNIKCAMIKNELEKDP 179
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEKKP----YTPFPPPPQPSKIDKLLESGEYFLS 281
L ++W+RFLPKFKK+NV KK K++K YTPFPPP SK+DK L SGE+FL+
Sbjct: 180 ELNKDSWERFLPKFKKQNVSNKKKAKKKEKSKKKEYTPFPPPMPESKVDKELASGEFFLT 239
Query: 282 ERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAM 336
E++K+ KK E++ + + K + ++IPP+E + +D T D+ ++
Sbjct: 240 EKQKKKKKEDERKTNETSHRKTHAEKHEKSYIPPKETDGKKKKVKKDDTIDIDSL 294
>gi|402594910|gb|EJW88836.1| dribble protein [Wuchereria bancrofti]
Length = 315
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/316 (49%), Positives = 220/316 (69%), Gaps = 31/316 (9%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G++ SSF+ LFP+YREKY++E WP+++ +E+ + +L+++EG+M
Sbjct: 27 WDISTFSKEDNPNGLVCESSFAILFPKYREKYIRECWPLLQKVFEEHFLKADLDVLEGTM 86
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KARD+++L+SRSVP QA+++L D+ +IIKI ++V NKERFVK
Sbjct: 87 VVKTTRKTWDPYIIIKARDVLKLISRSVPYEQAVRVLQDDTASEIIKISSMVTNKERFVK 146
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RR L+G +TLKA+E+LT CYI+VQG+TVAA+G ++GLK VR IVEDCM N +HP+Y+
Sbjct: 147 RRARLIGNEGATLKAVELLTKCYIMVQGSTVAAVGPYEGLKHVRMIVEDCMNN-IHPIYN 205
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDK 271
IK LM+K+EL KD L NENWDRFLPKFKK KIDK
Sbjct: 206 IKTLMIKRELMKDENLKNENWDRFLPKFKK--------------------------KIDK 239
Query: 272 LLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR-QNSCEAEDKT 330
LESGEYFLSE+ ++ +K EK+ KQ EK AE K++R + ++PP+ R +NS + +T
Sbjct: 240 QLESGEYFLSEKTRQMEKRNEKRTKQMEKIAERKKQRASEYVPPDGKIRPKNSYK---RT 296
Query: 331 NDVAAMAKSLKEKAKK 346
N+V ++LK+K +K
Sbjct: 297 NEVPIDIENLKKKVRK 312
>gi|268558824|ref|XP_002637403.1| Hypothetical protein CBG19110 [Caenorhabditis briggsae]
gi|268558832|ref|XP_002637407.1| Hypothetical protein CBG19114 [Caenorhabditis briggsae]
Length = 371
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 156/311 (50%), Positives = 221/311 (71%), Gaps = 12/311 (3%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 45 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHHLKADLDLLEGTM 104
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++++LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 105 CVRTTRKTWDPYIIMKAREVLKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 164
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RR L+G + +TLKALE+LT CY+ VQG TV A+G GLKQ+ +IV DCM+N +HP+Y+
Sbjct: 165 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLSGLKQINQIVTDCMKN-IHPIYN 223
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPP 262
IK +M+K+EL K+ L + NWD +LPK++KK K+K K K K YTPFPP
Sbjct: 224 IKSMMIKRELAKNDELKDTNWDPYLPKYRKKVQSASTTKEAKKKKAYKMKPKGEYTPFPP 283
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 322
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 284 APVMSKIDKQIESGEYFIREHERKLNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPREK 343
Query: 323 SCEAEDKTNDV 333
+ + + NDV
Sbjct: 344 --QTKKRANDV 352
>gi|308470857|ref|XP_003097661.1| hypothetical protein CRE_14906 [Caenorhabditis remanei]
gi|308239962|gb|EFO83914.1| hypothetical protein CRE_14906 [Caenorhabditis remanei]
Length = 368
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/299 (51%), Positives = 215/299 (71%), Gaps = 10/299 (3%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 43 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 102
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 103 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 162
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RR L+G + +TLKALE+LT CY+ VQG TV A+G GLKQ+ +IV DCM+N +HP+Y+
Sbjct: 163 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLSGLKQINQIVSDCMKN-IHPIYN 221
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPP 262
IK +M+K+EL K+ L + NWD++LP ++KK K+K K K K YTPFPP
Sbjct: 222 IKTMMIKRELSKNDELKDVNWDQYLPNYRKKVQSASTTKEAKKKKAYKMKPKGEYTPFPP 281
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 282 APVMSKIDKQIESGEYFIRENERKLNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPRE 340
>gi|308450342|ref|XP_003088263.1| hypothetical protein CRE_17767 [Caenorhabditis remanei]
gi|308248562|gb|EFO92514.1| hypothetical protein CRE_17767 [Caenorhabditis remanei]
Length = 368
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/299 (51%), Positives = 215/299 (71%), Gaps = 10/299 (3%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 43 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 102
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 103 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 162
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RR L+G + +TLKALE+LT CY+ VQG TV A+G GLKQ+ +IV DCM+N +HP+Y+
Sbjct: 163 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLSGLKQINQIVSDCMKN-IHPIYN 221
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPP 262
IK +M+K+EL K+ L + NWD++LP ++KK K+K K K K YTPFPP
Sbjct: 222 IKTMMIKRELSKNDELKDVNWDQYLPNYRKKVQSASTTKEAKKKKAYKMKPKGEYTPFPP 281
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 282 APVMSKIDKQIESGEYFIRENERKLNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPRE 340
>gi|341883487|gb|EGT39422.1| hypothetical protein CAEBREN_11963 [Caenorhabditis brenneri]
Length = 368
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/299 (51%), Positives = 216/299 (72%), Gaps = 10/299 (3%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 43 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 102
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 103 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 162
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RR L+G + +TLKALE+LT CY+ VQG TV A+G GLKQ+ +IV DCM+N +HP+Y+
Sbjct: 163 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQIVTDCMKN-IHPIYN 221
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPP 262
IK +M+K+EL K+ L + NWD +LPK++KK K+K K K KK YTP+PP
Sbjct: 222 IKTMMIKRELSKNDDLKDTNWDPYLPKYRKKVQSATTTKEAKKKKAYKMKPKKEYTPYPP 281
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 282 APVMSKIDKQIESGEYFIREHERKLNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPRE 340
>gi|341902510|gb|EGT58445.1| hypothetical protein CAEBREN_10565 [Caenorhabditis brenneri]
Length = 368
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/299 (51%), Positives = 216/299 (72%), Gaps = 10/299 (3%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 43 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 102
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 103 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 162
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RR L+G + +TLKALE+LT CY+ VQG TV A+G GLKQ+ +IV DCM+N +HP+Y+
Sbjct: 163 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQIVTDCMKN-IHPIYN 221
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPP 262
IK +M+K+EL K+ L + NWD +LPK++KK K+K K K KK YTP+PP
Sbjct: 222 IKTMMIKRELSKNDDLKDTNWDPYLPKYRKKVQSATTTKEAKKKKAYKMKPKKEYTPYPP 281
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 282 APVMSKIDKQIESGEYFIREHERKLNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPRE 340
>gi|17557644|ref|NP_504837.1| Protein C05C8.2 [Caenorhabditis elegans]
gi|351021075|emb|CCD63088.1| Protein C05C8.2 [Caenorhabditis elegans]
Length = 370
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/299 (51%), Positives = 215/299 (71%), Gaps = 10/299 (3%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
W + F N G+L+ SSFS+LFP+YREKY++E+WP+++ AL E+ + +L+L+EG+M
Sbjct: 45 WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDLLEGTM 104
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
V TTRKT DPYII+KAR++I+LLSRSVP QAI++L+DE+ C+IIKI ++VRNKERFVK
Sbjct: 105 CVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIRVLEDEIYCEIIKISSMVRNKERFVK 164
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RR L+G + +TLKALE+LT CY+ VQG TV A+G GLKQ+ +IV DCM+N +HP+Y+
Sbjct: 165 RRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQINQIVTDCMKN-IHPIYN 223
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKK---------NVKQKKVKSKEKKPYTPFPP 262
IK +M+K+EL K+ L + NWD +LP ++KK K+K K K KK +TPFPP
Sbjct: 224 IKTMMIKRELSKNDELKDANWDAYLPNYRKKVQSATTTKEAKKKKAYKMKPKKEFTPFPP 283
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
P SKIDK +ESGEYF+ E +++ K + K E A KT E ++++ + EE R+
Sbjct: 284 APVMSKIDKQIESGEYFIRENERKMNKKRAKLEASAVKTVEKQKQKLKVYQAKEEAPRE 342
>gi|355698774|gb|AES00908.1| KRR1, small subunit processome component,-like protein [Mustela
putorius furo]
Length = 274
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/270 (56%), Positives = 201/270 (74%), Gaps = 9/270 (3%)
Query: 4 NMEKTVNKKHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQ 58
N + + K + + KPKP + D + D WK F N G+LE SSF+TLFP+
Sbjct: 4 NGQAIADGKSEFRKKKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPK 63
Query: 59 YREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
YRE YL+E WP+V+ AL E+ ++ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RS
Sbjct: 64 YREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARS 123
Query: 119 VPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
V QA++IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQ
Sbjct: 124 VSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQ 183
Query: 179 GNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPK 238
GNTV+ +G F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+
Sbjct: 184 GNTVSVIGPFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQ 242
Query: 239 FKKKNVKQKKVKSKEKKP--YTPFPPPPQP 266
FK KNV ++K K+ YTPF PPPQP
Sbjct: 243 FKHKNVNKRKEPKKKTVKKEYTPF-PPPQP 271
>gi|221053157|ref|XP_002257953.1| RNA-binding protein [Plasmodium knowlesi strain H]
gi|193807785|emb|CAQ38490.1| RNA-binding protein, putative [Plasmodium knowlesi strain H]
Length = 298
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 155/284 (54%), Positives = 198/284 (69%), Gaps = 11/284 (3%)
Query: 6 EKTVNKKHKGK--HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKY 63
E + NK GK + K KPWD + NIDHWK+EKF N+ LE SSF LFP+YREKY
Sbjct: 5 EASHNKGQAGKRKYRKEKPWDNE-NIDHWKIEKFTREDNKNHFLEESSFKVLFPKYREKY 63
Query: 64 LQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123
LQ+ +K L + + E+NL+EG M V TT+KT DPYII+KARD+I LLSRSVP
Sbjct: 64 LQQFSTDIKNVLNNHFIKFEINLIEGYMCVKTTKKTFDPYIIIKARDMISLLSRSVPFSH 123
Query: 124 AIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVA 183
A ++LDDE CDIIKI VRN+ +F+KRRQ L+G N +TLKALEILT CYI V G TV+
Sbjct: 124 AKRVLDDETFCDIIKISTYVRNRNKFIKRRQRLLGSNGTTLKALEILTNCYICVHGKTVS 183
Query: 184 AMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKN 243
+G FK LK VRRI+ DCM+N +HPVYHIK L+ K+EL+K+ NENW++FLP FKK+N
Sbjct: 184 VIGYFKALKVVRRIIVDCMKN-IHPVYHIKELIAKRELQKNEEFKNENWEKFLPNFKKRN 242
Query: 244 VKQ-------KKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 280
V++ +K K +K+ + FPP P KID +E+GEYF+
Sbjct: 243 VQRKKIKQKLEKKKGAKKEEKSVFPPDQLPRKIDIQMETGEYFM 286
>gi|2208950|emb|CAB09659.1| dribble [Drosophila melanogaster]
Length = 327
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 144/238 (60%), Positives = 190/238 (79%), Gaps = 3/238 (1%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKRRQ L+GPN
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNG 151
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
+TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M N +HP+Y+IK LM+K+EL
Sbjct: 152 ATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNN-VHPIYNIKALMIKREL 210
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGE 277
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SG+
Sbjct: 211 MKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGD 268
>gi|313246422|emb|CBY35332.1| unnamed protein product [Oikopleura dioica]
Length = 335
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 173/310 (55%), Positives = 214/310 (69%), Gaps = 2/310 (0%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK E+F P N G LE S FSTLFP+YREKYL+E WP+V+ L Y + CEL+L+EG
Sbjct: 15 DGWKPEEFKPEHNPNGCLEESKFSTLFPKYREKYLKEVWPLVEKFLTPYFLKCELDLIEG 74
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPY I+ ARDLI+LL+RSVP A+K DDE +++KI LVRN ERF
Sbjct: 75 SMTVKTTKKTWDPYSIINARDLIKLLARSVPYEHAVKCFDDENAVEVVKIKGLVRNLERF 134
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
KRRQ L+GP TLK +E LTGCYI VQG TVA +G +GLK+ R+IV D M NK HP
Sbjct: 135 AKRRQRLIGPEGQTLKCVEYLTGCYINVQGGTVAIIGPHRGLKECRKIVVDTMNNK-HPA 193
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKI 269
++I+ LM+K+E K+PAL NENW RFLPK+K K VK++K KEKK YTPFPP P SKI
Sbjct: 194 HNIRELMIKRECAKNPALRNENWSRFLPKYKSKVVKKEKKDIKEKKEYTPFPPAPVSSKI 253
Query: 270 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF-IPPEEPSRQNSCEAED 328
DK LESGEYF+ +++ KK Q K EKQ E +KR A+F P E+ ++N E +
Sbjct: 254 DKELESGEYFIKANEQKKKKKQLKAEKQEAANEERSKKRAASFQAPKEKQVKKNDSEVRE 313
Query: 329 KTNDVAAMAK 338
MAK
Sbjct: 314 APKKKKKMAK 323
>gi|313229458|emb|CBY18272.1| unnamed protein product [Oikopleura dioica]
Length = 335
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 173/310 (55%), Positives = 215/310 (69%), Gaps = 2/310 (0%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK E+F P N G LE S FSTLFP+YREKYL+E WP+V+ L Y + CEL+L+EG
Sbjct: 15 DGWKPEEFKPEHNPNGCLEESKFSTLFPKYREKYLKEVWPLVEKFLTPYFLKCELDLIEG 74
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPY I+ ARDLI+LL+RSVP A+K DDE +++KI LVRN ERF
Sbjct: 75 SMTVKTTKKTWDPYSIINARDLIKLLARSVPYEHAVKCFDDENAVEVVKIKGLVRNLERF 134
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
KRRQ L+GP TLK +E LTGCYI VQG TVA +G +GLK+ R+IV D M NK HP
Sbjct: 135 AKRRQRLIGPEGQTLKCVEYLTGCYINVQGGTVAIIGPHRGLKECRKIVVDTMNNK-HPA 193
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKI 269
++I+ LM+K+E K+PAL NENW RFLPK+K K VK++K KEKK YTPFPP P SKI
Sbjct: 194 HNIRELMIKRECAKNPALRNENWSRFLPKYKSKVVKKEKKDIKEKKEYTPFPPAPVSSKI 253
Query: 270 DKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF-IPPEEPSRQNSCEAED 328
DK LESGEYF+ ++++ KK Q K EKQ E +KR A+F P E+ ++N E +
Sbjct: 254 DKELESGEYFIKAKEQKKKKKQLKAEKQEAANEERSKKRAASFQAPKEKQVKKNDSEVRE 313
Query: 329 KTNDVAAMAK 338
MAK
Sbjct: 314 APKKKKKMAK 323
>gi|27371283|gb|AAH41273.1| HRB2 protein, partial [Xenopus laevis]
Length = 257
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 138/215 (64%), Positives = 178/215 (82%), Gaps = 1/215 (0%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK E F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL + V EL+L+EG
Sbjct: 33 DGWKEEPFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNDSFVKAELDLIEG 92
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++IL D+M CDIIKIG+LVRN+ERF
Sbjct: 93 SMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVRILQDDMACDIIKIGSLVRNRERF 152
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 153 IKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALGPFGGLKEVRKVVSDTMKN-IHPI 211
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 244
Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV
Sbjct: 212 YNIKALMIKRELAKDPELRSKSWERFLPQFKHKNV 246
>gi|115530772|emb|CAL49409.1| KRR1, small subunit (SSU) processome component, homolog (yeast)
[Xenopus (Silurana) tropicalis]
Length = 249
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/238 (60%), Positives = 188/238 (78%), Gaps = 4/238 (1%)
Query: 10 NKKHKGKHDKPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
N K K K + +P +E + D WK + F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 11 NAKGKNKKRQTQPVEESELLTVPDGWKEDPFTKEDNPRGLLEESSFATLFPKYREAYLKE 70
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E V EL+L+EGSMTV+TT+KT DPY+IV+ARDLI+LL+RSVP QA++
Sbjct: 71 CWPLVQKALNESFVKAELDLIEGSMTVTTTKKTFDPYVIVRARDLIKLLARSVPFEQAVR 130
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D+M CDIIKIG+LVRN+ERF+KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 131 ILQDDMACDIIKIGSLVRNRERFIKRRQRLLGPKGSTLKALELLTNCYIMVQGNTVSALG 190
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 244
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KDP L +++W+RFLP+FK KNV
Sbjct: 191 PFSGLKEVRKVVWDTMKN-IHPIYNIKALMIKRELAKDPELRSKSWERFLPQFKHKNV 247
>gi|326429404|gb|EGD74974.1| hypothetical protein PTSG_07198 [Salpingoeca sp. ATCC 50818]
Length = 318
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 160/276 (57%), Positives = 209/276 (75%), Gaps = 6/276 (2%)
Query: 16 KHDKPKPWDEDPNIDHW-KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
++ K KPWD + IDHW + E ++E SSFSTLFP+YRE+YL+E WP ++
Sbjct: 34 RYRKDKPWDHE-GIDHWANIPYTKDEAGENTLVEESSFSTLFPKYREQYLREWWPHIERE 92
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
LK++ + EL+LVEGSMTV TTRKT DPYII+KARD+I+LL+RSVP A ++L DE+ C
Sbjct: 93 LKKHHIVAELDLVEGSMTVRTTRKTWDPYIIIKARDVIKLLARSVPFQHAKRVLQDEIAC 152
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
++IKI N+VRNKERFVKRRQ L+GPN +TLKA+E+LT CY+LVQGNTV+ +G +KGLKQV
Sbjct: 153 EVIKIANIVRNKERFVKRRQRLIGPNGATLKAIELLTDCYMLVQGNTVSCIGPYKGLKQV 212
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSK-E 253
R++V DCM N +HPVY+IK LM+K+EL K L E+WDRFLPKFKK N K+KK ++
Sbjct: 213 RKVVLDCMNN-IHPVYNIKTLMIKRELMKREDLKGESWDRFLPKFKKTNQKKKKSNTQIV 271
Query: 254 KKPYTPFPPPPQPSKIDKLLESGEYFL--SERKKES 287
KK + PP P K+DK +ESGEYFL S ++K+S
Sbjct: 272 KKEPSHLPPEQLPRKVDKEIESGEYFLKPSGKRKQS 307
>gi|156093946|ref|XP_001613011.1| RNA-binding protein [Plasmodium vivax Sal-1]
gi|148801885|gb|EDL43284.1| RNA-binding protein, putative [Plasmodium vivax]
Length = 301
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 149/272 (54%), Positives = 192/272 (70%), Gaps = 9/272 (3%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
K+ K KPWD + NIDHWKVEKF N+ LE SSF LFP+YREKYLQ+ +K L
Sbjct: 17 KYRKEKPWDNE-NIDHWKVEKFTREDNKHHFLEESSFKVLFPKYREKYLQQFSTDIKNVL 75
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ + E+NL+EG M V TT+KT DPYII+KARD+I LLSRSVP A ++L+DE CD
Sbjct: 76 NNHFIKFEMNLIEGYMCVKTTKKTFDPYIIIKARDMISLLSRSVPFTHAKRVLEDETFCD 135
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI VRN+ +F+KRRQ L+G N +TLKALEILT CYI V G TV+ +G FK LK VR
Sbjct: 136 IIKISTYVRNRNKFIKRRQRLLGSNGTTLKALEILTSCYICVHGKTVSVIGFFKALKVVR 195
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK-------K 248
RI+ DCM+N +HPVYHIK L+ K+EL+K+ NENW+++LP FKK+N +++ K
Sbjct: 196 RIIIDCMKN-IHPVYHIKELIAKRELQKNEEFKNENWEKYLPNFKKRNAQRRKIKQKLEK 254
Query: 249 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 280
K +K+ + FPP P KID +E+GEYF+
Sbjct: 255 KKGAKKEEKSVFPPDQLPRKIDIQMETGEYFM 286
>gi|70949626|ref|XP_744206.1| RNA-binding protein [Plasmodium chabaudi chabaudi]
gi|56524063|emb|CAH77733.1| RNA-binding protein, putative [Plasmodium chabaudi chabaudi]
Length = 297
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 151/269 (56%), Positives = 196/269 (72%), Gaps = 7/269 (2%)
Query: 16 KHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
++ K KPWD + NIDHWK+EKF N+ LE SSF LFP+YREKYLQ+ +K L
Sbjct: 15 RYRKDKPWDNE-NIDHWKIEKFTKEDNKHHFLEESSFKILFPKYREKYLQQFSTDIKNTL 73
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+ + E+NL+EG MTV TT+KT DPYII+KARD+I LLSRSVP A ++L+DE CD
Sbjct: 74 HNHFIKFEINLIEGYMTVKTTKKTFDPYIIIKARDMISLLSRSVPFSHAKRVLEDETFCD 133
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IKI +RNK +F+KRRQ L+G N++TLKALEILT CYI V G TV+ +G+FK LK VR
Sbjct: 134 -IKISGYIRNKNKFIKRRQRLLGSNATTLKALEILTQCYICVHGKTVSVIGNFKSLKIVR 192
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ----KKVKS 251
RIV DCM+N +HPVYHIK L+ K+ELEK+ L NENW+++LP FKK+NV++ +K++
Sbjct: 193 RIVIDCMKN-IHPVYHIKELIAKRELEKNDELKNENWEKYLPNFKKRNVQRKKIKQKLEK 251
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFL 280
K K + FPP P KID +E+GEYF+
Sbjct: 252 KNGKKKSIFPPDQLPRKIDIQMETGEYFM 280
>gi|124801035|ref|XP_001349592.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|3845166|gb|AAC71863.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 300
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 149/263 (56%), Positives = 192/263 (73%), Gaps = 6/263 (2%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVS 81
PWD + NIDHWKVEKF N+ LE SSF LFP+YREKYLQ+ +K L ++ +
Sbjct: 20 PWDNE-NIDHWKVEKFTQEDNKHHFLEESSFKVLFPKYREKYLQQFSSDIKNVLNKHFIK 78
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++L+EG M V TT+KT DPYII+K+RD+I LLSRSVP A ++L+DE CDIIKI
Sbjct: 79 FEIDLIEGYMCVKTTKKTFDPYIIIKSRDMISLLSRSVPFVHAKRVLEDETYCDIIKISG 138
Query: 142 LVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDC 201
VRNK +F+KRRQ L+G N++TLKALEILT CYI + G TV+ +G FK LK VRRI+ DC
Sbjct: 139 YVRNKNKFIKRRQRLLGSNATTLKALEILTNCYICIHGKTVSVIGHFKSLKVVRRIIIDC 198
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ----KKVKSKEKKPY 257
M+N +HPVYHIK L+ K+ELEK+ NENW++FLP FKK+NV++ +K+ K+KK
Sbjct: 199 MKN-IHPVYHIKELIAKRELEKNEEFKNENWEKFLPNFKKRNVQRKKIKEKLDKKKKKNK 257
Query: 258 TPFPPPPQPSKIDKLLESGEYFL 280
+ FPP P KID +E+GEYFL
Sbjct: 258 SVFPPDQLPRKIDIQMETGEYFL 280
>gi|339234355|ref|XP_003382294.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
gi|316978714|gb|EFV61660.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
Length = 276
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 147/257 (57%), Positives = 190/257 (73%), Gaps = 10/257 (3%)
Query: 25 EDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCEL 84
E NI WK+ F N G+L S+F+TLFP+YREKYL+E +P+++ AL E+G+ E+
Sbjct: 9 ESSNI--WKIPSFTQKDNPQGLLCESNFATLFPKYREKYLRECFPLLQKALSEHGIKAEM 66
Query: 85 NLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR 144
+ + GSMTV TTRKT DPY+I+KARDLI+LL+RSVP QA++IL+D+ CDIIKI LVR
Sbjct: 67 DALRGSMTVRTTRKTWDPYVILKARDLIKLLARSVPIEQAVRILEDDTACDIIKISGLVR 126
Query: 145 NKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQN 204
N+ RFVKRRQ L+GPN TLKA+E+LT CY+++QGNTV+A+G + GL+ VR+IVEDCM N
Sbjct: 127 NRVRFVKRRQRLIGPNGCTLKAIELLTNCYVMIQGNTVSAVGPYSGLRDVRKIVEDCMNN 186
Query: 205 KMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPP 264
+HP LM+KKEL KDP LA ENWDRFLPKF+KK QKK SK + P
Sbjct: 187 -IHPT-----LMLKKELMKDPKLATENWDRFLPKFRKKLTSQKKKSSKRVE--HPKQTVN 238
Query: 265 QPSKIDKLLESGEYFLS 281
K+D+ LE+GEYFL+
Sbjct: 239 AQCKLDQQLETGEYFLN 255
>gi|1326184|gb|AAB00557.1| Rev interacting protein Rip-1 [Homo sapiens]
Length = 288
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/241 (58%), Positives = 189/241 (78%), Gaps = 6/241 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 K 247
+
Sbjct: 254 R 254
>gi|116194448|ref|XP_001223036.1| 90S preribosome/SSU processome component KRR1 [Chaetomium globosum
CBS 148.51]
gi|88179735|gb|EAQ87203.1| hypothetical protein CHGG_03822 [Chaetomium globosum CBS 148.51]
Length = 291
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/305 (51%), Positives = 206/305 (67%), Gaps = 35/305 (11%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
H K KPWD D +ID WKV+ F + G LE SSF TLFP+YRE+YL+++WP+V AL
Sbjct: 5 HKKEKPWDTD-DIDKWKVDPFTKDESSGPFLEESSFMTLFPKYRERYLKDSWPLVTKALD 63
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
++G++ L+L+EGSMTV TT+KT DP I+ ARDLI+LL+RSVPAPQAIKIL+D M CDI
Sbjct: 64 KHGITATLDLIEGSMTVKTTKKTFDPAAILNARDLIKLLARSVPAPQAIKILEDGMACDI 123
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
+KI ++VRNKERFVKRRQ ++G N +TLKALE+LT YILV GNTV+ MG
Sbjct: 124 LKIRSMVRNKERFVKRRQRILGQNGTTLKALELLTETYILVHGNTVSVMG---------- 173
Query: 197 IVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSK 252
+K+EL KDP LA+E+W R+LP FKK+ + ++ KV K
Sbjct: 174 --------------------IKRELAKDPELAHEDWSRYLPNFKKRTLSKRRTPFKVTDK 213
Query: 253 EKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAF 312
KK YTPFPP P+ SK+D+ +E+GEYFL + K E+ EK +K E KR+R+ +
Sbjct: 214 AKKTYTPFPPAPEKSKVDQQIETGEYFLGKEAKHRAAEAERAEKAKQKKEEKKREREREY 273
Query: 313 IPPEE 317
+PPEE
Sbjct: 274 VPPEE 278
>gi|407916980|gb|EKG10307.1| K-like protein [Macrophomina phaseolina MS6]
Length = 262
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 148/231 (64%), Positives = 181/231 (78%), Gaps = 5/231 (2%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTV TTRKT DP I+KARDLI+LL+RSVPAPQA+KILDD CDIIKI NLVRNKERFV
Sbjct: 1 MTVKTTRKTWDPAAILKARDLIKLLARSVPAPQALKILDDGTACDIIKIRNLVRNKERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 210
KRRQ ++GP+ STLKALE+LTGCYILVQGNTVAAMG +KGLK+VRR+VEDCM N +HP+Y
Sbjct: 61 KRRQRILGPDGSTLKALELLTGCYILVQGNTVAAMGGYKGLKEVRRVVEDCMAN-IHPIY 119
Query: 211 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK----KVKSKEKKPYTPFPPPPQP 266
+IK LM+K+EL KDP L NE+WDRFLP FKK++ ++ KV K KK YTPFPPP +
Sbjct: 120 YIKELMIKRELAKDPELVNESWDRFLPNFKKRHTAKRRVPHKVTDKSKKVYTPFPPPQEK 179
Query: 267 SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
SK+D +ESGEYFL ++ KE K+ + ++ EK E ++ R F P+E
Sbjct: 180 SKVDLQIESGEYFLGKQAKERKEKERREAAMREKMEEKRKARAKEFEAPKE 230
>gi|281202375|gb|EFA76580.1| hypothetical protein PPL_10349 [Polysphondylium pallidum PN500]
Length = 368
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 159/309 (51%), Positives = 224/309 (72%), Gaps = 13/309 (4%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
SSFSTLFP+YREKY++E WP+V+ L E+G+ C+L+L++GSM+V+TT+K DP I+KAR
Sbjct: 57 SSFSTLFPKYREKYIKEIWPLVEKELNEHGIVCKLDLIDGSMSVTTTKKCWDPVAILKAR 116
Query: 110 DLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEI 169
DLIRLLSRSVP A +I+ DE CDIIKIG VRNKERFVKRRQ L+GP+ +TLK++E+
Sbjct: 117 DLIRLLSRSVPFHHAKRIMLDENNCDIIKIGGSVRNKERFVKRRQRLIGPDGATLKSIEL 176
Query: 170 LTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALAN 229
LT CY+LVQG TVA++G + GL QV +IVEDCM+N +HP+Y+IK +M+++EL KD +L
Sbjct: 177 LTRCYVLVQGTTVASIGPWDGLLQVNKIVEDCMKN-IHPIYNIKEMMIRRELMKDESLKT 235
Query: 230 ENWDRFLPKFKKKNVKQKK----------VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 279
E+WDRF+PKFKK NV+ + ++KK PF P P K D + SGEYF
Sbjct: 236 ESWDRFIPKFKKNNVQSSRDIAKIKQKKKQIKQKKKDTGPFAPAQLPRKEDLEMASGEYF 295
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKS 339
LSE KK KK +E++EKQAE A+ +++R ++ + P E R + + ++ N++ + +S
Sbjct: 296 LSEAKKAEKKKKEREEKQAEAVAKKQQERASSLVAPAEKERPHY--SNNQQNNLPSKEES 353
Query: 340 LKEKAKKLR 348
LK+ + L+
Sbjct: 354 LKKIQENLK 362
>gi|323349604|gb|EGA83823.1| Krr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 217
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 140/209 (66%), Positives = 168/209 (80%), Gaps = 4/209 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEK 223
RR+VEDCM+N +HP+YHIK LM+K+EL K
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAK 211
>gi|330801607|ref|XP_003288817.1| hypothetical protein DICPUDRAFT_153096 [Dictyostelium purpureum]
gi|325081153|gb|EGC34680.1| hypothetical protein DICPUDRAFT_153096 [Dictyostelium purpureum]
Length = 349
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/275 (58%), Positives = 205/275 (74%), Gaps = 7/275 (2%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
SSF+TLFP+YREKYLQE W +V+ LK++G+ C+L+L+EGSMT +TT K DP I+KAR
Sbjct: 53 SSFATLFPKYREKYLQEIWKLVENLLKDHGIECKLDLIEGSMTTTTTSKCWDPVAILKAR 112
Query: 110 DLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEI 169
DLI+LLSRSVP A KI+ D+ C++IKIG VRNKERFVKRRQ LVGP+ STLKA+E+
Sbjct: 113 DLIKLLSRSVPFEHAQKIMLDDYNCEVIKIGGFVRNKERFVKRRQRLVGPDGSTLKAIEL 172
Query: 170 LTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALAN 229
LT CY+LVQGNTV+ +G ++GL QVR+IVEDCM+N +HP+Y+IK LM+K+ELEKD +L
Sbjct: 173 LTKCYVLVQGNTVSCIGPWQGLLQVRKIVEDCMKN-IHPIYNIKELMIKRELEKDESLKA 231
Query: 230 ENWDRFLPKFKKKNVKQKKVKSKEK--KPYTPFPPPPQPSKIDKLLESGEYFLSERKKES 287
E+WD+FLP+FKKKN +KK K+K + PF P K D + SGEYFLSE KK
Sbjct: 232 ESWDKFLPQFKKKNQNKKKKVQKKKKDRDAAPFAQDQLPRKEDIAMASGEYFLSEEKKRK 291
Query: 288 KKWQEKQEKQAEKTAENKRK--RDAAFIPPEEPSR 320
K +E++ K E +ENKR+ R I PEE R
Sbjct: 292 LKEKEREAKHVE--SENKRQEERMKLSIAPEEKQR 324
>gi|403412462|emb|CCL99162.1| predicted protein [Fibroporia radiculosa]
Length = 294
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/295 (50%), Positives = 198/295 (67%), Gaps = 29/295 (9%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
M+V TTRKT DPYII+KARD+I+LL+R V A QA+KILDD + CDI+KIGNLVRNKERFV
Sbjct: 1 MSVRTTRKTFDPYIILKARDMIKLLARGVAAGQAVKILDDGVACDIVKIGNLVRNKERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 210
KRRQ ++GP+ STLKA+E+LT CY+LVQG+TV+ MG +KGLK+VRRI+ DCM+N +HP+Y
Sbjct: 61 KRRQRIIGPDGSTLKAIELLTQCYVLVQGSTVSVMGPYKGLKEVRRIILDCMKN-IHPIY 119
Query: 211 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK--------KVKSKE--------- 253
IK LM+K+EL KDP L NE+WDRFLPKF++ ++K ++K K
Sbjct: 120 RIKELMIKRELAKDPQLVNESWDRFLPKFRRHHLKTSEKTERKNDRLKDKNEARKAAGLE 179
Query: 254 -----------KKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTA 302
KK YTPFPPP P K+D LESGEYFL+ +K+ ++ + +++KQ + T
Sbjct: 180 PIGPGSKGQQTKKVYTPFPPPQMPRKVDMQLESGEYFLNSNEKQEREARRRKQKQDQVTE 239
Query: 303 ENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLRKQKFAENIN 357
E + KR AF+ P E + E + D + S + K RK+K E+ N
Sbjct: 240 ERQAKRAEAFVAPVEEAAPTVEEKRKRRRDKESDNPSEESAHKTKRKKKRFEDTN 294
>gi|189503038|gb|ACE06900.1| unknown [Schistosoma japonicum]
Length = 343
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 200/293 (68%), Gaps = 6/293 (2%)
Query: 32 WKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGS 90
WK KF+P N G + SS+ TLFP+YREKYL E WP +K + E+ + E+NL E +
Sbjct: 45 WKEPKFNPEDNPHGRLFASSSYLTLFPKYREKYLNEIWPALKRIMMEHHIRVEINLAEST 104
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
M V TT +T DP+II+KARD+IRLL+RSVP QA+++LDDE DII+I + N+ERFV
Sbjct: 105 MEVRTTPRTFDPFIILKARDVIRLLARSVPLEQAVRVLDDETFADIIEIN--MTNRERFV 162
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 210
KRR L+G + TLKALE+ T CYI+VQG TV+ +G + LK+VR+IV+ C+ +HP Y
Sbjct: 163 KRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQGCIYENVHPAY 222
Query: 211 HIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSK 268
IK L++ K+L DP N +WDRFLPK KKK + ++K +K ++KK Y PFPP P PSK
Sbjct: 223 SIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKPLKVRKKKEYNPFPPAPVPSK 282
Query: 269 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE-NKRKRDAAFIPPEEPSR 320
ID LE G YFL+E +++ K + K + + E K KR AA +PPE+ S+
Sbjct: 283 IDIELEKGTYFLAEAERKRLKVESTIAKSNQVSKERQKAKRTAALVPPEKRSK 335
>gi|226466630|emb|CAX69450.1| KRR1, small subunit (SSU) processome component, homolog
[Schistosoma japonicum]
Length = 343
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 200/293 (68%), Gaps = 6/293 (2%)
Query: 32 WKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGS 90
WK KF+P N G + SS+ TLFP+YREKYL E WP +K + E+ + E+NL E +
Sbjct: 45 WKEPKFNPEDNPHGRLFASSSYLTLFPKYREKYLNEIWPALKRIMMEHHIRVEINLAEST 104
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
M V TT +T DP+II+KARD+IRLL+RSVP QA+++LDDE DII+I + N+ERFV
Sbjct: 105 MEVRTTPRTFDPFIILKARDVIRLLARSVPLEQAVRVLDDETFADIIEIN--MTNRERFV 162
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 210
KRR L+G + TLKALE+ T CYI+VQG TV+ +G + LK+VR+IV+ C+ +HP Y
Sbjct: 163 KRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQGCIYENVHPAY 222
Query: 211 HIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSK 268
IK L++ K+L DP N +WDRFLPK KKK + ++K +K ++KK Y PFPP P PSK
Sbjct: 223 SIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKPLKIRKKKEYNPFPPAPVPSK 282
Query: 269 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE-NKRKRDAAFIPPEEPSR 320
ID LE G YFL+E +++ K + K + + E K KR AA +PPE+ S+
Sbjct: 283 IDIELEKGTYFLAEAERKRLKVESTIAKSNQVSKERQKAKRTAALVPPEKRSK 335
>gi|29841357|gb|AAP06389.1| similar to GenBank Accession Number BC016778 HIV-1 rev binding
protein 2 in Homo sapiens [Schistosoma japonicum]
Length = 343
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/293 (50%), Positives = 200/293 (68%), Gaps = 6/293 (2%)
Query: 32 WKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGS 90
WK KF+P N G + SS+ TLFP+YREKYL E WP +K + E+ + E+NL E +
Sbjct: 45 WKEPKFNPEDNPHGRLFASSSYLTLFPKYREKYLSEIWPALKRIMMEHHIRVEINLAEST 104
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
M V TT +T DP+II+KARD+IRLL+RSVP QA+++LDDE DII+I + N+ERFV
Sbjct: 105 MEVRTTPRTFDPFIILKARDVIRLLARSVPLEQAVRVLDDETFADIIEIN--MTNRERFV 162
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 210
KRR L+G + TLKALE+ T CYI+VQG TV+ +G + LK+VR+IV+ C+ +HP Y
Sbjct: 163 KRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQGCIYENVHPAY 222
Query: 211 HIKILMVKKELEKDPALANENWDRFLPKFKKKNV--KQKKVKSKEKKPYTPFPPPPQPSK 268
IK L++ K+L DP N +WDRFLPK KKK + ++K +K ++KK Y PFPP P PSK
Sbjct: 223 SIKRLLIIKKLSMDPTKQNMSWDRFLPKMKKKILSRRRKPLKVRKKKEYNPFPPAPVPSK 282
Query: 269 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE-NKRKRDAAFIPPEEPSR 320
ID LE G YFL+E +++ K + K + + E K KR AA +PPE+ S+
Sbjct: 283 IDIELEKGTYFLAEAERKRLKVESTIAKSNQVSKERQKAKRTAALVPPEKRSK 335
>gi|444730114|gb|ELW70509.1| KRR1 small subunit processome component like protein [Tupaia
chinensis]
Length = 283
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/249 (57%), Positives = 188/249 (75%), Gaps = 4/249 (1%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERFV
Sbjct: 1 MTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDIACDIIKIGSLVRNKERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 210
KRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+Y
Sbjct: 61 KRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFNGLKEVRKVVLDTMKN-IHPIY 119
Query: 211 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 268
+IK LM+K+EL KD L +++W+RFLP FK KNV ++K K+ YTPFPPP S+
Sbjct: 120 NIKTLMIKRELAKDSELRSQSWERFLPHFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQ 179
Query: 269 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAED 328
IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E S EA
Sbjct: 180 IDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKSVVKPKEAST 239
Query: 329 KTN-DVAAM 336
T DVAA+
Sbjct: 240 DTKIDVAAI 248
>gi|62202255|gb|AAH92872.1| LOC553525 protein, partial [Danio rerio]
Length = 260
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 178/229 (77%), Gaps = 3/229 (1%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTV+TT+KT DPY I++ARDLI+LL+RSVP QA++ILDD+M CDIIKIG LVRN+ERFV
Sbjct: 1 MTVNTTKKTFDPYSIIRARDLIKLLARSVPFEQAVRILDDDMACDIIKIGTLVRNRERFV 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 210
KRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+Y
Sbjct: 61 KRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSALGPFNGLKEVRKVVPDTMKN-IHPIY 119
Query: 211 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSK 268
+IK LM+K+EL DP L ++W RFLP F+ K++ ++K K++ YTPFPPP SK
Sbjct: 120 NIKTLMIKRELANDPELRTQSWGRFLPNFRHKSLSKRKQPKKKRVKKEYTPFPPPQPESK 179
Query: 269 IDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
IDK L +GE+FL E +K KK E + KQAE ++ + +R AF+PP+E
Sbjct: 180 IDKELATGEFFLRESEKRRKKMSEIKVKQAEALSKRQEERKKAFVPPKE 228
>gi|328870400|gb|EGG18774.1| hypothetical protein DFA_02513 [Dictyostelium fasciculatum]
Length = 389
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/278 (52%), Positives = 206/278 (74%), Gaps = 11/278 (3%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+ + SSFST+FP+YREKY++E WP+V+ L E+G+ C+L+ +EG+MTV TT+K DP I
Sbjct: 58 LYDESSFSTVFPKYREKYIKEIWPLVEKELVEHGIDCKLDFIEGTMTVVTTKKCWDPVAI 117
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+KARDLI+LLSRSVP A KI++D+ CDIIKIG LVRNKERFVKRRQ L+GP+ +TLK
Sbjct: 118 LKARDLIKLLSRSVPFVHAKKIMEDDNNCDIIKIGGLVRNKERFVKRRQRLIGPDGATLK 177
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
++E+LT CY+L+QG TVA++G + GL++VR+IVEDCM+N +HP+Y+IK LM+++EL K+
Sbjct: 178 SIELLTRCYVLIQGTTVASIGPWDGLEKVRKIVEDCMKN-IHPIYNIKELMIRRELFKND 236
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEK------KPYTPFPPPPQPSKIDKLLESGEYF 279
AL +E+W RF+PKFKK+NV+ K K+K T F P K D +ESGEYF
Sbjct: 237 ALKSEDWSRFIPKFKKRNVQSKAPAPKKKKNRDAPSASTIF----TPRKEDLEMESGEYF 292
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+S+ K+ KK E+++KQ E T ++ + +I P E
Sbjct: 293 MSKESKDKKKKVEREKKQEEATIRRQQAQAKHYIAPAE 330
>gi|195350218|ref|XP_002041638.1| GM16638 [Drosophila sechellia]
gi|194123411|gb|EDW45454.1| GM16638 [Drosophila sechellia]
Length = 314
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/311 (47%), Positives = 203/311 (65%), Gaps = 34/311 (10%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVRTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV + R
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHRRRR------------- 138
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
NTV+A+G +KGL+QVR IV + M N +HP+Y+IK LM+K+EL
Sbjct: 139 ------------------NTVSALGPYKGLQQVRDIVLETMNN-VHPIYNIKALMIKREL 179
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYF 279
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SGEYF
Sbjct: 180 MKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGEYF 239
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKS 339
L++ +K++K+ QE+ EKQ E + +R+ F+PP E S +S + ED + K+
Sbjct: 240 LNQEQKQAKRNQERTEKQKEASKRQDERRNKDFVPPTEESAASSRKKEDGSTSNKVDVKA 299
Query: 340 LKEKAKKLRKQ 350
LK K K K+
Sbjct: 300 LKAKLIKANKK 310
>gi|67478464|ref|XP_654627.1| RNA-binding protein [Entamoeba histolytica HM-1:IMSS]
gi|56471694|gb|EAL49241.1| RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449701660|gb|EMD42436.1| RNA-binding protein, putative [Entamoeba histolytica KU27]
Length = 255
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/245 (56%), Positives = 181/245 (73%), Gaps = 15/245 (6%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WKV F P N G+LE SSFS LFP+YRE YL+ W ++ AL E + EL+LV+G M
Sbjct: 8 WKVNDFKPEDNPNGLLEESSFSILFPKYRESYLKGMWYVINKALDEVCLKGELDLVKGIM 67
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV TTRKT DP+II+KARD+++LLSR VPA +AIK+L D+ CDIIKIGN+++NKERFVK
Sbjct: 68 TVKTTRKTWDPFIIIKARDMLKLLSRGVPAQEAIKVLQDQYWCDIIKIGNMIKNKERFVK 127
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RRQ LVGPN +T KA+EILTGC+IL+QG TV+ +GS G+K VR+IVEDCM N +HP+Y+
Sbjct: 128 RRQRLVGPNGATQKAIEILTGCFILIQGKTVSVIGSPSGIKMVRKIVEDCMDN-IHPIYN 186
Query: 212 IKILMVKKELEKDPALANENWDRFLPKF-KKKNVK-------------QKKVKSKEKKPY 257
IK LM+KKEL K+ + NE+W R++P++ KK+N K KK ++KK Y
Sbjct: 187 IKALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEKLKEIKKKKKELKKKIIEKKKNY 246
Query: 258 TPFPP 262
+PFPP
Sbjct: 247 SPFPP 251
>gi|407039095|gb|EKE39456.1| RNA-binding protein, putative [Entamoeba nuttalli P19]
Length = 255
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/245 (56%), Positives = 181/245 (73%), Gaps = 15/245 (6%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WKV F P N G+LE SSFS LFP+YRE YL+ W ++ AL E + EL+LV+G M
Sbjct: 8 WKVNDFKPEDNPNGLLEESSFSILFPKYREAYLKGMWYVINKALDEVCLKGELDLVKGIM 67
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV TTRKT DP+II+KARD+++LLSR VPA +AIK+L D+ CDIIKIGN+++NKERFVK
Sbjct: 68 TVKTTRKTWDPFIIIKARDMLKLLSRGVPAQEAIKVLQDQYWCDIIKIGNMIKNKERFVK 127
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RRQ LVGPN +T KA+EILTGC+IL+QG TV+ +GS G+K VR+IVEDCM N +HP+Y+
Sbjct: 128 RRQRLVGPNGATQKAIEILTGCFILIQGKTVSVIGSPSGIKMVRKIVEDCMDN-IHPIYN 186
Query: 212 IKILMVKKELEKDPALANENWDRFLPKF-KKKNVK-------------QKKVKSKEKKPY 257
IK LM+KKEL K+ + NE+W R++P++ KK+N K KK ++KK Y
Sbjct: 187 IKALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEKLKEIKKKKKELKKKIIEKKKNY 246
Query: 258 TPFPP 262
+PFPP
Sbjct: 247 SPFPP 251
>gi|167379708|ref|XP_001735249.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165902848|gb|EDR28568.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 255
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 138/245 (56%), Positives = 181/245 (73%), Gaps = 15/245 (6%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
WKV F P N G+LE SSFS LFP+YRE YL+ W ++ AL E + EL+LV+G M
Sbjct: 8 WKVNDFKPEDNPNGLLEESSFSILFPKYREAYLKGMWYVINKALDEVCLKGELDLVKGIM 67
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
TV TTRKT DP+II+KARD+++LLSR VPA +A+K+L D+ CDIIKIGN+++NKERFVK
Sbjct: 68 TVKTTRKTWDPFIIIKARDMLKLLSRGVPAQEAVKVLQDQYWCDIIKIGNMIKNKERFVK 127
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RRQ LVGPN +T KA+EILTGC+IL+QG TV+ +GS G+K VR+IVEDCM N +HP+Y+
Sbjct: 128 RRQRLVGPNGATQKAIEILTGCFILIQGKTVSVIGSPSGIKMVRKIVEDCMDN-IHPIYN 186
Query: 212 IKILMVKKELEKDPALANENWDRFLPKF-KKKNVK-------------QKKVKSKEKKPY 257
IK LM+KKEL K+ + NE+W R++P++ KK+N K KK ++KK Y
Sbjct: 187 IKALMIKKELMKNENMKNEDWSRYIPQYSKKQNTKPEKLKEIKKKKKELKKKIIEKKKNY 246
Query: 258 TPFPP 262
+PFPP
Sbjct: 247 SPFPP 251
>gi|390371134|dbj|GAB65015.1| RNA-binding protein [Plasmodium cynomolgi strain B]
Length = 283
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/280 (52%), Positives = 183/280 (65%), Gaps = 26/280 (9%)
Query: 10 NKKHKGK--HDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEA 67
NK+ GK + K KPWD + NIDHWKVEKF N+ LE SSF LFP+YREKYLQ+
Sbjct: 9 NKREGGKRKYRKEKPWDNE-NIDHWKVEKFTREDNKNHFLEESSFKVLFPKYREKYLQQF 67
Query: 68 WPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKI 127
+K L + V E+NL+EG M ARD+I LLSRSVP A ++
Sbjct: 68 STDIKNVLNNHFVKFEMNLIEGYMC---------------ARDMISLLSRSVPFSHAKRV 112
Query: 128 LDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGS 187
LDDE CDIIKI VRNK +F+KRRQ L+G N +TLKALEILT CYI V G TV+ +G
Sbjct: 113 LDDETFCDIIKISTYVRNKNKFIKRRQRLLGSNGTTLKALEILTNCYICVHGKTVSVIGY 172
Query: 188 FKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQK 247
FK LK VRRI+ DCM+N +HPVYHIK L+ K+ELEK+ NENW++FLP FKK+N +++
Sbjct: 173 FKALKVVRRIIVDCMKN-IHPVYHIKELIAKRELEKNEEFKNENWEKFLPNFKKRNAQRR 231
Query: 248 -------KVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 280
K K +K+ + FPP P KID +E+GEYF+
Sbjct: 232 KIKQKLDKKKGAKKEEKSVFPPDQLPRKIDIQMETGEYFM 271
>gi|346975397|gb|EGY18849.1| ribosomal RNA assembly protein mis3 [Verticillium dahliae VdLs.17]
Length = 216
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 130/198 (65%), Positives = 159/198 (80%), Gaps = 3/198 (1%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
H+K KPWD + +ID WKVE F P N GG +E SSFS LFP+YRE YL+EAWP+V +L
Sbjct: 4 HEKDKPWDTE-DIDKWKVETFKPTDNVGGSFVEESSFSVLFPKYREVYLKEAWPLVTKSL 62
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
++YG++C L+L+EGSMTV TTRKT DP ++ ARDLI+LL+RSVPAPQA+KIL+D + CD
Sbjct: 63 EKYGIACSLDLIEGSMTVKTTRKTYDPAAVLNARDLIKLLARSVPAPQAVKILEDGVACD 122
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKI NLV NK+RFVKRRQ L+GPN STLKALE+LT YILV GNTV+AMG +KGLK+VR
Sbjct: 123 IIKIRNLVGNKDRFVKRRQRLLGPNGSTLKALELLTETYILVHGNTVSAMGPYKGLKEVR 182
Query: 196 RIVEDCMQNKMHPVYHIK 213
RI M N +HP+Y IK
Sbjct: 183 RIAIQTMDN-IHPIYAIK 199
>gi|403271962|ref|XP_003927865.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Saimiri boliviensis boliviensis]
Length = 331
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 134/238 (56%), Positives = 174/238 (73%), Gaps = 15/238 (6%)
Query: 19 KPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KP+ DE + D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL
Sbjct: 24 KPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKAL 83
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL D++ CD
Sbjct: 84 NEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSYEQAVRILQDDVACD 143
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR
Sbjct: 144 IIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVR 203
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 253
++V D M+N +HP+Y+IKI D LA+ + FL +KK K + +K+K+
Sbjct: 204 KVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKANQKKRQKMEAIKAKQ 249
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 220 KIDKELASGEYFLKANQKKRQKMEAIKAKQAEAVSKRQEERNKAFIPPKE 269
>gi|410965128|ref|XP_003989104.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Felis catus]
Length = 324
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 179/247 (72%), Gaps = 17/247 (6%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP + D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNKKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKASQKKRQKM 242
Query: 247 KKVKSKE 253
+ +K+K+
Sbjct: 243 EAIKAKQ 249
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E EA
Sbjct: 220 KIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKPVVKPKEAS 279
Query: 328 DKTN-DVAAM 336
+ DVAA+
Sbjct: 280 TENKIDVAAI 289
>gi|395744608|ref|XP_003778133.1| PREDICTED: KRR1 small subunit processome component homolog [Pongo
abelii]
Length = 324
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 180/247 (72%), Gaps = 17/247 (6%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKANQKKRQKM 242
Query: 247 KKVKSKE 253
+ +K+K+
Sbjct: 243 EAIKAKQ 249
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E EA
Sbjct: 220 KIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKEAS 279
Query: 328 DKTN-DVAAM 336
+T DVA++
Sbjct: 280 AETKIDVASI 289
>gi|335288274|ref|XP_003355571.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Sus scrofa]
Length = 318
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 134/243 (55%), Positives = 176/243 (72%), Gaps = 17/243 (6%)
Query: 16 KHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPM 70
+ KPKP + D + D WK F N G+LE SSF+TLFP+YRE YL+E WP+
Sbjct: 13 RRQKPKPENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPL 72
Query: 71 VKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDD 130
V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D
Sbjct: 73 VQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQD 132
Query: 131 EMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKG 190
++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F G
Sbjct: 133 DVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSG 192
Query: 191 LKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVK 250
LK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K + +K
Sbjct: 193 LKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKSSQKKRQKMEAIK 240
Query: 251 SKE 253
+K+
Sbjct: 241 AKQ 243
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E EA
Sbjct: 214 KIDKELASGEYFLKSSQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKPVVKPKEAS 273
Query: 328 DKTN-DVAAM 336
+T DVA +
Sbjct: 274 TETKIDVATI 283
>gi|397526020|ref|XP_003832939.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Pan paniscus]
Length = 324
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 180/247 (72%), Gaps = 17/247 (6%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEYRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILHDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKANQKKRQKM 242
Query: 247 KKVKSKE 253
+ +K+K+
Sbjct: 243 EAIKAKQ 249
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E EA
Sbjct: 220 KIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKEAS 279
Query: 328 DKTN-DVAAM 336
+T DVA++
Sbjct: 280 TETKIDVASI 289
>gi|296212422|ref|XP_002752823.1| PREDICTED: KRR1 small subunit processome component homolog isoform
2 [Callithrix jacchus]
Length = 323
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/238 (56%), Positives = 173/238 (72%), Gaps = 15/238 (6%)
Query: 19 KPKPWDEDPNI---DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
KP DE + D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL
Sbjct: 24 KPDNQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKAL 83
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLIRLL+RSV QA++IL D++ CD
Sbjct: 84 IEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIRLLARSVSFEQAVRILQDDVACD 143
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR
Sbjct: 144 IIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVR 203
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKE 253
++V D M+N +HP+Y+IKI D LA+ + FL +KK K + +K+K+
Sbjct: 204 KVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKANQKKRQKMEAIKAKQ 249
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 263 PPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQN 322
P KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 215 PIYNIKIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPVVK 274
Query: 323 SCEAEDKTN-DVAAM 336
+A +T DVA++
Sbjct: 275 PKKASTETKIDVASI 289
>gi|116292726|gb|ABJ97679.1| HRB2 variant B [Homo sapiens]
Length = 324
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 179/247 (72%), Gaps = 17/247 (6%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKR Q LVGP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRGQRLVGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IKI D LA+ + FL +KK K
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKI---------DKELASGEY--FLKANQKKRQKM 242
Query: 247 KKVKSKE 253
+ +K+K+
Sbjct: 243 EAIKAKQ 249
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
KIDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 220 KIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKE 269
>gi|385305422|gb|EIF49399.1| ribosomal rna assembly protein mis3 [Dekkera bruxellensis AWRI1499]
Length = 217
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/209 (59%), Positives = 159/209 (76%), Gaps = 11/209 (5%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
MTV TTRKT DP I+ ARDLI+LL+RSVP PQA+KI+ D++ C+++KI LV NKERF+
Sbjct: 1 MTVKTTRKTYDPVQILNARDLIKLLARSVPFPQAVKIMQDDVACEVVKIDGLVSNKERFI 60
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 210
KRRQ L+GP+ +TLKALE+LT CY+LVQG+TV+ MG +GLK +RR++ DCM+N +HP+Y
Sbjct: 61 KRRQRLIGPSGNTLKALELLTDCYMLVQGSTVSIMGPHQGLKVLRRVIIDCMKN-VHPIY 119
Query: 211 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ----------KKVKSKEKKPYTPF 260
HIK LM+K+EL K P LANE+W RFLP+FKK+ V + K KS EKK YTPF
Sbjct: 120 HIKELMIKRELAKRPDLANEDWSRFLPQFKKRAVARRIPKQVKDAKKNGKSTEKKVYTPF 179
Query: 261 PPPPQPSKIDKLLESGEYFLSERKKESKK 289
PP P KID +ESGEYFL+ +K+ KK
Sbjct: 180 PPAQTPRKIDLZIESGEYFLNNNQKKLKK 208
>gi|432096558|gb|ELK27205.1| KRR1 small subunit processome component like protein [Myotis
davidii]
Length = 273
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 118/184 (64%), Positives = 150/184 (81%), Gaps = 1/184 (0%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDIACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 216
Query: 210 YHIK 213
Y+IK
Sbjct: 217 YNIK 220
>gi|335775912|gb|AEH58730.1| KRR1 small subunit processome component-like protein [Equus
caballus]
Length = 220
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/207 (58%), Positives = 158/207 (76%), Gaps = 6/207 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + + KP D D + D WK F N G+LE SSF+TLFP+YRE YL++
Sbjct: 15 KSESRRQNAKPEDRDESELLTVPDGWKEPAFSREDNPRGLLEESSFATLFPKYREAYLKD 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIK 213
F GLK+VR++V D M+N +HP+Y+IK
Sbjct: 195 PFNGLKEVRKVVLDTMKN-IHPIYNIK 220
>gi|123455111|ref|XP_001315303.1| ribosomal RNA assembly protein mis3 [Trichomonas vaginalis G3]
gi|121897975|gb|EAY03080.1| ribosomal RNA assembly protein mis3, putative [Trichomonas
vaginalis G3]
Length = 298
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 165/235 (70%), Gaps = 1/235 (0%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+LE SSF LFP YREKYL + W ++ + YG++ E++ G++++ TT KT DP I
Sbjct: 20 LLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAI 79
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+ ARD I+L++RSVP QA ++ ++ + +II IG +RN+ERF KRRQ L+GP STLK
Sbjct: 80 LNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLK 139
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
ALE+LT CYILVQG+TV+ +G+ +G+ ++V DCM N +HPVYHIK LMVK++L K+P
Sbjct: 140 ALELLTQCYILVQGHTVSIIGNIRGINDASKVVVDCMNN-IHPVYHIKRLMVKRDLMKNP 198
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 280
A+ANE+WDR+LPK K +K K + P PQ +++DK +ESGEYFL
Sbjct: 199 AMANEDWDRYLPKVVKATKHTEKKKKVHNERNRGLPDYPQDTEVDKQIESGEYFL 253
>gi|311302994|gb|ADP89071.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
gi|311303000|gb|ADP89074.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
gi|311303004|gb|ADP89076.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 165/235 (70%), Gaps = 1/235 (0%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+LE SSF LFP YREKYL + W ++ + YG++ E++ G++++ TT KT DP I
Sbjct: 1 LLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAI 60
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+ ARD I+L++RSVP QA ++ ++ + +II IG +RN+ERF KRRQ L+GP STLK
Sbjct: 61 LNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLK 120
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
ALE+LT CYILVQG+TV+ +G+ +G+ ++V DCM N +HPVYHIK LMVK++L K+P
Sbjct: 121 ALELLTQCYILVQGHTVSIIGNIRGINDASKVVVDCMNN-IHPVYHIKRLMVKRDLMKNP 179
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 280
A+ANE+WDR+LPK K +K K + P PQ +++DK +ESGEYFL
Sbjct: 180 AMANEDWDRYLPKVVKATKHTEKKKKVHNERNRGLPDYPQDTEVDKQIESGEYFL 234
>gi|311302998|gb|ADP89073.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/235 (49%), Positives = 165/235 (70%), Gaps = 1/235 (0%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+LE SSF LFP YREKYL + W ++ + YG++ E++ G++++ TT KT DP I
Sbjct: 1 LLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAI 60
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+ ARD I+L++RSVP QA ++ ++ + +II IG +RN+ERF KRRQ L+GP STLK
Sbjct: 61 LNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLK 120
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
ALE+LT CYILVQG+TV+ +G+ +G+ ++V DCM N +HPVYHIK LMVK++L K+P
Sbjct: 121 ALELLTQCYILVQGHTVSIIGNIRGINDASKVVVDCMNN-IHPVYHIKRLMVKRDLMKNP 179
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 280
A+ANE+WDR+LPK K +K K + P PQ ++++K +ESGEYFL
Sbjct: 180 AMANEDWDRYLPKVVKATKHTEKKKKVHNERNRGLPDYPQDTEVEKQIESGEYFL 234
>gi|311303002|gb|ADP89075.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 165/235 (70%), Gaps = 1/235 (0%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+LE SSF LFP YREKYL + W ++ + YG++ E++ G++++ TT KT DP I
Sbjct: 1 LLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAI 60
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+ ARD I+L++RSVP QA ++ ++ + +II IG +RN+ERF KRRQ L+GP STLK
Sbjct: 61 LNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLK 120
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
ALE+LT CYIL+QG+TV+ +G+ +G+ ++V DCM N +HPVYHIK LMVK++L K+P
Sbjct: 121 ALELLTQCYILIQGHTVSIIGNIRGINDASKVVVDCMNN-IHPVYHIKRLMVKRDLMKNP 179
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 280
A+ANE+WDR+LPK K +K K + P PQ ++++K +ESGEYFL
Sbjct: 180 AMANEDWDRYLPKVVKATKHTEKKKKVHNERNRGLPDYPQDTEVEKQIESGEYFL 234
>gi|323305860|gb|EGA59597.1| Krr1p [Saccharomyces cerevisiae FostersB]
Length = 196
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 125/189 (66%), Positives = 151/189 (79%), Gaps = 4/189 (2%)
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
M CD+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGL
Sbjct: 1 MACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGL 60
Query: 192 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKK 248
K+VRR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK
Sbjct: 61 KEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKK 119
Query: 249 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKR 308
+++ EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 120 IRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEER 179
Query: 309 DAAFIPPEE 317
FI PEE
Sbjct: 180 AKDFIAPEE 188
>gi|311302996|gb|ADP89072.1| putative HIV-1 rev-binding protein [Trichomonas vaginalis]
Length = 250
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/235 (49%), Positives = 164/235 (69%), Gaps = 1/235 (0%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+LE SSF LFP YREKYL + W ++ + YG++ E++ G++++ TT KT DP I
Sbjct: 1 LLEESSFKVLFPHYREKYLTDNWKKIQDKMDSYGINIEVDYKNGNISLKTTDKTWDPVAI 60
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+ ARD I+L++RSVP QA ++ ++ + +II IG +RN+ERF KRRQ L+GP STLK
Sbjct: 61 LNARDAIKLVARSVPIEQAFRVFEEGTESNIIIIGKHIRNQERFNKRRQRLLGPGGSTLK 120
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
ALE+LT CYILVQG+TV+ +G+ G+ ++V DCM N +HPVYHIK LMVK++L K+P
Sbjct: 121 ALELLTQCYILVQGHTVSIIGNICGINDASKVVVDCMNN-IHPVYHIKRLMVKRDLMKNP 179
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFL 280
A+ANE+WDR+LPK K +K K + P PQ ++++K +ESGEYFL
Sbjct: 180 AMANEDWDRYLPKVVKATKHTEKKKKVHNERNRGLPDYPQDTEVEKQIESGEYFL 234
>gi|429327834|gb|AFZ79594.1| hypothetical protein BEWA_024430 [Babesia equi]
Length = 243
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/207 (61%), Positives = 162/207 (78%), Gaps = 1/207 (0%)
Query: 108 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL 167
ARDLI+LL+RSVP QA K+LDD + CDI+KIG ++RNK++F+KRRQ L+GP STLKAL
Sbjct: 3 ARDLIKLLARSVPFQQAKKVLDDGIFCDIVKIGGMLRNKDKFIKRRQRLIGPGGSTLKAL 62
Query: 168 EILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPAL 227
E+LT CYIL QG TV+ +GS KG+K RRIVEDCM+N +HPVYHIK LM+K+ELEKDPAL
Sbjct: 63 ELLTECYILTQGQTVSIIGSIKGIKVARRIVEDCMKN-VHPVYHIKELMIKRELEKDPAL 121
Query: 228 ANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKES 287
NENWDRFLP+FKK++VK KK K +KKP + P P K D LLESGEYF+ E +++
Sbjct: 122 KNENWDRFLPQFKKRSVKHKKAKIVKKKPSSLLIPTQTPRKEDLLLESGEYFMLEEERKR 181
Query: 288 KKWQEKQEKQAEKTAENKRKRDAAFIP 314
KK E++E Q +K+ E K++R+ F P
Sbjct: 182 KKEIERREGQKKKSLEKKKRREEEFDP 208
>gi|72390515|ref|XP_845552.1| ribosomal RNA assembly protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358823|gb|AAX79276.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei]
gi|70802087|gb|AAZ11993.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 325
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 125/262 (47%), Positives = 170/262 (64%), Gaps = 18/262 (6%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ ++ +L+L+EGSMTV+TTR+T D
Sbjct: 59 GGACCVAETTFATQFPSYLESYIRSIWPAVETVLGQHQLTGKLDLMEGSMTVATTRRTWD 118
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY IVKARD IRLL+R+VP QA KI E+ CDII I ++ RF+KRR L+GP +
Sbjct: 119 PYAIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISLKGKSTRRFIKRRDRLIGPKA 178
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TVA MG KG +QVR+IV+DCM N +HP+Y +K L++K+EL
Sbjct: 179 QTLKALEILTGCYVLVQGKTVAVMGPVKGCQQVRKIVDDCMNN-IHPIYGLKQLLIKREL 237
Query: 222 EKDPALANENWDRFLPKFKK---------------KNVKQKKVKSKEKKPYTPFPPPPQP 266
K L +E+W RF+P +KK K Q +K + K + FPP P
Sbjct: 238 AKREDLKHEDWSRFIPVYKKTLQNKEKAKAVKKAKKEKLQASLKKQANKEKSVFPPAPPK 297
Query: 267 SKIDKLLESGEYFLSERKKESK 288
K D +ESG+ FL +K+ +
Sbjct: 298 RKEDIAMESGKAFLVGQKRRKR 319
>gi|308158862|gb|EFO61423.1| KRR1 [Giardia lamblia P15]
Length = 328
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 128/271 (47%), Positives = 171/271 (63%), Gaps = 21/271 (7%)
Query: 15 GKHDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
G+ D P+ W E +F P N G +L+VSSFSTLFP YRE Y+ W +
Sbjct: 26 GRTDVPEGWRE---------PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWKDLAN 76
Query: 74 ALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM 132
L YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+
Sbjct: 77 MLSSKYGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 136
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLK 192
CDII+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQGNTVA MG+ +G+
Sbjct: 137 DCDIIRIKNMASRKDSFIKRRARFVGPNAQTLKAIELLTNTKIQVQGNTVAVMGASRGVG 196
Query: 193 QVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKK 248
VR IV DC++ +HPV HIK LM+K+EL K P +ANE+W RF+P FKKKN K K
Sbjct: 197 LVRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKV 256
Query: 249 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 279
K K +K SK+D+ L SGEYF
Sbjct: 257 AKRKREKQEAAI------SKVDQQLASGEYF 281
>gi|407416655|gb|EKF37751.1| hypothetical protein MOQ_002048 [Trypanosoma cruzi marinkellei]
Length = 292
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 130/269 (48%), Positives = 172/269 (63%), Gaps = 27/269 (10%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 22 GGACCVDETTFATQFPSYLESYIRSVWPAVETVLGQHQLVGKLDLMEGSMTVATTRRTWD 81
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYIIVKARD IRLL+R+VP QA KI E+ CDII I + RF+KRR LVGP +
Sbjct: 82 PYIIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISMKGNSTRRFIKRRDRLVGPKA 141
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TVA MG KG +QVR+IV+DCM N +HP+Y +K L++K+EL
Sbjct: 142 QTLKALEILTGCYVLVQGKTVAVMGPVKGCQQVRKIVDDCM-NNIHPIYGLKQLLIKREL 200
Query: 222 EKDPALANENWDRFLPKFKKK------------------NVKQKKVKSKEKKPYTPFPPP 263
K L +E+W RF+P +KK V KK KEK + FPP
Sbjct: 201 AKREDLRHEDWSRFIPVYKKSVQNKEKAKAVRKVKKERLRVSLKKQAGKEK---SIFPPA 257
Query: 264 PQPSKIDKLLESGEYFL---SERKKESKK 289
P K D +ESG+ FL +R+++ K+
Sbjct: 258 PPKRKEDIAMESGKAFLLRPQQRRQQPKR 286
>gi|71422464|ref|XP_812143.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876887|gb|EAN90292.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 292
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/257 (49%), Positives = 165/257 (64%), Gaps = 24/257 (9%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 22 GGACCVDETTFATQFPSYLESYIRSVWPAVETVLGQHQLVGKLDLMEGSMTVATTRRTWD 81
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYIIVKARD IRLL+R+VP QA KI E+ CDII I + RF+KRR LVGP +
Sbjct: 82 PYIIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISMKGNSTRRFIKRRDRLVGPKA 141
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TVA MG KG +QVR+IV+DCM N +HP+Y +K L++K+EL
Sbjct: 142 QTLKALEILTGCYVLVQGKTVAVMGPVKGCQQVRKIVDDCMNN-IHPIYGLKQLLIKREL 200
Query: 222 EKDPALANENWDRFLPKFKKK------------------NVKQKKVKSKEKKPYTPFPPP 263
K L +E+W RF+P +KK V KK KEK + FPP
Sbjct: 201 AKREDLRHEDWSRFIPVYKKSVQNKEKAKAVRKVKKERLRVSLKKQAGKEK---SIFPPA 257
Query: 264 PQPSKIDKLLESGEYFL 280
P K D +ESG+ FL
Sbjct: 258 PPKRKEDLAMESGKAFL 274
>gi|71650197|ref|XP_813801.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878720|gb|EAN91950.1| hypothetical protein, conserved [Trypanosoma cruzi]
gi|407851896|gb|EKG05594.1| hypothetical protein TCSYLVIO_003331 [Trypanosoma cruzi]
Length = 292
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/269 (48%), Positives = 171/269 (63%), Gaps = 27/269 (10%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 22 GGACCVDETTFATQFPSYLESYIRSVWPAVETVLGQHQLVGKLDLMEGSMTVATTRRTWD 81
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYIIVKARD IRLL+R+VP QA KI E+ CDII I + RF+KRR LVGP +
Sbjct: 82 PYIIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISMKGNSTRRFIKRRDRLVGPKA 141
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TVA MG KG +QVR+IV+DCM N +HP+Y +K L++K+EL
Sbjct: 142 QTLKALEILTGCYVLVQGKTVAVMGPVKGCQQVRKIVDDCM-NNIHPIYGLKQLLIKREL 200
Query: 222 EKDPALANENWDRFLPKFKKK------------------NVKQKKVKSKEKKPYTPFPPP 263
K L +E+W RF+P +KK V KK KEK + FPP
Sbjct: 201 AKREDLRHEDWSRFIPVYKKSVQNKEKAKAVRKVKKERLRVSLKKQAGKEK---SIFPPA 257
Query: 264 PQPSKIDKLLESGEYFL---SERKKESKK 289
P K D +ESG FL +R+++ K+
Sbjct: 258 PPKRKEDIAMESGRAFLLRPQQRRQQPKR 286
>gi|261328960|emb|CBH11938.1| ribosomal RNA assembly protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 287
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/262 (47%), Positives = 170/262 (64%), Gaps = 18/262 (6%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ ++ +L+L+EGSMTV+TTR+T D
Sbjct: 21 GGACCVAETTFATQFPSYLESYIRSIWPAVETVLGQHQLTGKLDLMEGSMTVATTRRTWD 80
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY IVKARD IRLL+R+VP QA KI E+ CDII I ++ RF+KRR L+GP +
Sbjct: 81 PYAIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISLKGKSTRRFIKRRDRLIGPKA 140
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TVA MG KG +QVR+IV+DCM N +HP+Y +K L++K+EL
Sbjct: 141 QTLKALEILTGCYVLVQGKTVAVMGPVKGCQQVRKIVDDCMNN-IHPIYGLKQLLIKREL 199
Query: 222 EKDPALANENWDRFLPKFKK---------------KNVKQKKVKSKEKKPYTPFPPPPQP 266
K L +E+W RF+P +KK K Q +K + K + FPP P
Sbjct: 200 AKREDLKHEDWSRFIPVYKKTLQNKEKAKAVKKAKKEKLQASLKKQANKEKSVFPPAPPK 259
Query: 267 SKIDKLLESGEYFLSERKKESK 288
K D +ESG+ FL +K+ +
Sbjct: 260 RKEDIAMESGKAFLVGQKRRKR 281
>gi|291000911|ref|XP_002683022.1| predicted protein [Naegleria gruberi]
gi|284096651|gb|EFC50278.1| predicted protein [Naegleria gruberi]
Length = 305
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 133/281 (47%), Positives = 192/281 (68%), Gaps = 6/281 (2%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKE--YGVSCELNLVEGSMTVSTTRKT 99
N G+ + S F LFP+YRE+YL+E + +++ L + + LN EG + + TT +T
Sbjct: 12 NPNGLADRSDFVILFPEYREQYLKEHFTVIESTLGASPFYLKTTLNCKEGKIIIETTERT 71
Query: 100 RDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGP 159
DP+II K RD ++L+SR V +A ++L+D + +++KIGNL RNKE F KRRQ L GP
Sbjct: 72 FDPFIIFKGRDCLQLVSRGVAFEEAKRVLEDNVFSEVMKIGNLCRNKEVFTKRRQRLFGP 131
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
+ STLKAL++LTGC+I +QG TV+ +G G+K V ++ DCM N +HP+YHIK LMVKK
Sbjct: 132 DGSTLKALQLLTGCFIFIQGKTVSVIGEVNGIKLVSEVITDCMNN-IHPIYHIKQLMVKK 190
Query: 220 ELEKDPALANENWDRFLPKFKK---KNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESG 276
EL+ AN +WD++LPKFKK K++ +KK K +KK YTPFP P+ SK D +E+G
Sbjct: 191 ELKNSSEYANVSWDKYLPKFKKTVNKSIVKKKKKKIQKKEYTPFPNAPEKSKKDIEIETG 250
Query: 277 EYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
EYFLS+ +K+ K+ E+ EKQ EK E K+++D + P+E
Sbjct: 251 EYFLSKEEKQLKQVSERTEKQKEKKEEKKKQQDKLYEAPKE 291
>gi|159112012|ref|XP_001706236.1| KRR1 [Giardia lamblia ATCC 50803]
gi|157434330|gb|EDO78562.1| KRR1 [Giardia lamblia ATCC 50803]
Length = 328
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/271 (47%), Positives = 171/271 (63%), Gaps = 21/271 (7%)
Query: 15 GKHDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
G+ D P+ W E +F P N G +L+VSSFSTLFP YRE Y+ W +
Sbjct: 26 GRTDVPEGWRE---------PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWKDLAN 76
Query: 74 ALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM 132
L YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+
Sbjct: 77 MLSSKYGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 136
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLK 192
CDII+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQGNTVA MG+ +G+
Sbjct: 137 DCDIIRIKNMASRKDSFIKRRARFVGPNAQTLKAIELLTDTKIQVQGNTVAVMGASRGVG 196
Query: 193 QVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKK 248
VR IV DC++ +HPV HIK LM+K+EL K P +ANE+W RF+P FKKKN K K
Sbjct: 197 LVRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKV 256
Query: 249 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 279
K K +K SK+D+ L SGEYF
Sbjct: 257 AKRKREKQEAAI------SKVDQQLASGEYF 281
>gi|22901766|gb|AAN10062.1| KRR1 [Giardia intestinalis]
Length = 305
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/280 (46%), Positives = 176/280 (62%), Gaps = 22/280 (7%)
Query: 15 GKHDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
G+ D P+ W E +F P N G +L+VSSFSTLFP YRE Y+ W +
Sbjct: 3 GRTDVPEGWRE---------PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWKDLAN 53
Query: 74 ALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM 132
L YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+
Sbjct: 54 MLSSKYGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 113
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLK 192
CDII+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQGNTVA MG+ +G+
Sbjct: 114 DCDIIRIKNMASRKDSFIKRRARFVGPNAQTLKAIELLTDTKIQVQGNTVAVMGASRGVG 173
Query: 193 QVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKK 248
VR IV DC++ +HPV HIK LM+K+EL K P +ANE+W RF+P FKKKN K K
Sbjct: 174 LVRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKV 233
Query: 249 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESK 288
K K +K SK+D+ L SGEYF + R+ E K
Sbjct: 234 AKRKREKQEAAI------SKVDQQLASGEYF-ARREGEEK 266
>gi|253744746|gb|EET00901.1| KRR1 [Giardia intestinalis ATCC 50581]
Length = 328
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/271 (47%), Positives = 171/271 (63%), Gaps = 21/271 (7%)
Query: 15 GKHDKPKPWDEDPNIDHWKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKG 73
G+ D P+ W E +F P N G +L+VSSFSTLFP YRE Y+ W +
Sbjct: 26 GRTDVPEGWRE---------PEFRPEDNKSGALLDVSSFSTLFPMYREPYITSIWSDLAN 76
Query: 74 ALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM 132
L YG++ EL+L +G++TV TT KT DP I+ AR++I +LSRS+ QA + ++E+
Sbjct: 77 MLSSKYGIAAELDLQKGTITVQTTDKTWDPAAILSARNMIWMLSRSMTFEQAKRCFENEV 136
Query: 133 QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLK 192
CDII+I N+ K+ F+KRR VGPN+ TLKA+E+LT I VQGNTVA MG+ +G+
Sbjct: 137 DCDIIRIKNMTPRKDSFIKRRARFVGPNAQTLKAIELLTDTKIQVQGNTVAVMGASRGVG 196
Query: 193 QVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVK----QKK 248
VR IV DC++ +HPV HIK LM+K+EL K P +ANE+W RF+P FKKKN K K
Sbjct: 197 LVRNIVTDCIERNIHPVQHIKTLMIKRELAKIPEMANEDWSRFIPTFKKKNTKPYKPAKV 256
Query: 249 VKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 279
K K +K SKID+ L SGEYF
Sbjct: 257 AKRKCEKQEAAI------SKIDQQLASGEYF 281
>gi|154341947|ref|XP_001566925.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064250|emb|CAM40449.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 322
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 128/268 (47%), Positives = 171/268 (63%), Gaps = 18/268 (6%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+TLFP Y E Y++ WP V+ L+++ + L+L+EGSM V+TTR+T D
Sbjct: 23 GGACCVDETTFATLFPSYLESYIKSIWPAVEELLEQHQLVGRLDLMEGSMAVATTRRTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY IV ARD I+LL+R+VP QA KI ++ CDII IG + RFVKRR L+GP +
Sbjct: 83 PYAIVDARDFIKLLARNVPLAQAQKIFQTDITCDIINIGVKGGSVRRFVKRRDRLIGPKA 142
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TVA MG KG + VR IVEDCM N +HP+Y +K L++K+EL
Sbjct: 143 QTLKALEILTGCYVLVQGKTVAVMGPVKGTQMVRSIVEDCMNN-IHPIYGLKQLLIKREL 201
Query: 222 EKDPALANENWDRFLPKFKKKNV---KQKKVKSKEK------------KPYTPFPPPPQP 266
K + +E+W RF+P +KK KQK V+ +K K T FPP P
Sbjct: 202 SKREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKDLKHKQAGKVKTIFPPAPPK 261
Query: 267 SKIDKLLESGEYFLSERKKESKKWQEKQ 294
D +ESG+ FL+ R++ K+ E Q
Sbjct: 262 RLEDIAMESGQAFLAPRQRRPKEELELQ 289
>gi|157872762|ref|XP_001684909.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68127979|emb|CAJ06702.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 321
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 127/268 (47%), Positives = 170/268 (63%), Gaps = 18/268 (6%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+TLFP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 23 GGACCVDETTFATLFPSYLESYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY I+ ARD I+LL+R+VP QA KI ++ CDII I + RFVKRR L+GP +
Sbjct: 83 PYAIIDARDFIKLLARNVPLAQAQKIFQTDITCDIINISVKGGSVRRFVKRRDRLIGPQA 142
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TVA MG KG + VR IVEDCM N +HP+Y +K L++K+EL
Sbjct: 143 QTLKALEILTGCYVLVQGKTVAVMGPVKGTQMVRSIVEDCMNN-IHPIYGLKQLLIKREL 201
Query: 222 EKDPALANENWDRFLPKFKKKN---VKQKKVKSKEK------------KPYTPFPPPPQP 266
K + +E+W RF+P +KK KQK V+ +K K T FPP P
Sbjct: 202 SKREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKESKRKQAGKEKTIFPPAPPK 261
Query: 267 SKIDKLLESGEYFLSERKKESKKWQEKQ 294
D +ESG+ FL+ R++ K E Q
Sbjct: 262 RLEDIAMESGQAFLAPRQRRRKDELELQ 289
>gi|401425923|ref|XP_003877446.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493691|emb|CBZ28981.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 321
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/268 (47%), Positives = 170/268 (63%), Gaps = 18/268 (6%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+TLFP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 23 GGACCVDETTFATLFPSYLETYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY I+ ARD I+LL+R+VP QA KI ++ CDII I + RFVKRR L+GP +
Sbjct: 83 PYAIIDARDFIKLLARNVPLAQAQKIFQADITCDIINISVKGGSVRRFVKRRDRLIGPKA 142
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TVA MG KG + VR IVEDCM N +HP+Y +K L++K+EL
Sbjct: 143 QTLKALEILTGCYVLVQGKTVAVMGPVKGTQMVRSIVEDCMNN-IHPIYGLKQLLIKREL 201
Query: 222 EKDPALANENWDRFLPKFKKKN---VKQKKVKSKEK------------KPYTPFPPPPQP 266
K + +E+W RF+P +KK KQK V+ +K K T FPP P
Sbjct: 202 AKREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKESKRKQAGKEKTIFPPAPPR 261
Query: 267 SKIDKLLESGEYFLSERKKESKKWQEKQ 294
D +ESG+ FL+ R++ K E Q
Sbjct: 262 RLEDIAMESGQAFLAPRQRRHKDELELQ 289
>gi|146094080|ref|XP_001467151.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134071515|emb|CAM70204.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 321
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/284 (44%), Positives = 176/284 (61%), Gaps = 18/284 (6%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+TLFP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 23 GGACCVDETTFATLFPSYLESYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY I+ ARD I+LL+R+VP QA KI ++ CDII I + RFVKRR L+GP +
Sbjct: 83 PYAIIDARDFIKLLARNVPLAQAQKIFQTDITCDIINISVKGGSVRRFVKRRDRLIGPQA 142
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TVA MG KG + VR IVEDCM N +HP+Y +K L++K+EL
Sbjct: 143 QTLKALEILTGCYVLVQGKTVAVMGPVKGTQMVRSIVEDCMNN-IHPIYGLKQLLIKREL 201
Query: 222 EKDPALANENWDRFLPKFKKKN---VKQKKVKSKEK------------KPYTPFPPPPQP 266
K + +E+W RF+P +KK KQK V+ +K K + FPP P
Sbjct: 202 SKREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKEAKRKQAGKEKSIFPPAPPK 261
Query: 267 SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDA 310
D +ESG+ FL+ R++ E Q + + + R R++
Sbjct: 262 RLEDIAMESGQAFLAPRQRRHTDELELQSATSPSPSASARTRNS 305
>gi|340054290|emb|CCC48586.1| putative ribosomal RNA assembly protein [Trypanosoma vivax Y486]
Length = 284
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 169/265 (63%), Gaps = 24/265 (9%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ L ++ ++ +L+L+EGSMTV+TTR+T D
Sbjct: 20 GGACCVAETTFATRFPSYLESYIRSVWPAVEAVLAQHQLTGQLDLLEGSMTVATTRRTWD 79
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY +VKARD IRLL+R+VP QA KI E+ CDII I ++ F+KRR LVGP +
Sbjct: 80 PYAVVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISLKGKSTRCFIKRRDRLVGPKA 139
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TV+ MG KG +QVR+IV+DCM N +HPVY ++ L++K+EL
Sbjct: 140 QTLKALEILTGCYVLVQGKTVSVMGPVKGCQQVRKIVDDCMNN-IHPVYGLQQLLIKREL 198
Query: 222 EKDPALANENWDRFLPKFKKK------------------NVKQKKVKSKEKKPYTPFPPP 263
K L +E+W RF+P +KK +K KEK + FPP
Sbjct: 199 SKREDLKHEDWSRFIPVYKKTVQTKEKAKAVRKAKKERLRASLEKQAGKEK---SIFPPA 255
Query: 264 PQPSKIDKLLESGEYFLSERKKESK 288
P K D +ESGE FL +++ + +
Sbjct: 256 PPKRKEDLAMESGEAFLVKKRHQKR 280
>gi|357625461|gb|EHJ75900.1| hypothetical protein KGM_05036 [Danaus plexippus]
Length = 243
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 139/247 (56%), Positives = 182/247 (73%), Gaps = 10/247 (4%)
Query: 112 IRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILT 171
++LLSRSVP QA+++LDDE+ CDIIKI + V KE F+KRRQ L+GPN TLK++E+LT
Sbjct: 1 MKLLSRSVPFEQAVRVLDDEIGCDIIKINSFVSKKETFLKRRQRLIGPNGVTLKSIELLT 60
Query: 172 GCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANEN 231
CY+LVQGNTV+ +G +KGL QVRRIVED M+N +HP+Y+IK LM+K+EL KDP L NE+
Sbjct: 61 DCYVLVQGNTVSTVGPYKGLLQVRRIVEDTMKN-IHPMYNIKNLMIKRELMKDPKLKNES 119
Query: 232 WDRFLPKFKKKNV-KQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKW 290
WDRFLPKFK KNV +++ +KKPYTPFPPP SKIDK L SGEYFL + +K++K+
Sbjct: 120 WDRFLPKFKSKNVPRKQPKNKIKKKPYTPFPPPQPESKIDKELASGEYFLKDEQKKAKRH 179
Query: 291 QEKQEKQ--AEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKSLKEKAKKLR 348
EK+EKQ A+K + +RK+D FIPP EP+ ++ +E T D+ K K KK+
Sbjct: 180 HEKEEKQMLAKKARQEERKKD--FIPPTEPASSHNKVSEQSTVDI----NQFKAKMKKVS 233
Query: 349 KQKFAEN 355
KQ A N
Sbjct: 234 KQNKALN 240
>gi|398019704|ref|XP_003863016.1| hypothetical protein, conserved [Leishmania donovani]
gi|322501247|emb|CBZ36326.1| hypothetical protein, conserved [Leishmania donovani]
Length = 321
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 123/259 (47%), Positives = 167/259 (64%), Gaps = 18/259 (6%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+TLFP Y E Y++ WP V+ L ++ + +L+L+EGSMTV+TTR+T D
Sbjct: 23 GGACCVDETTFATLFPSYLESYIKSIWPAVEELLGQHQLVGKLDLLEGSMTVATTRRTWD 82
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY I+ ARD I+LL+R+VP QA KI ++ CDII I + RFVKRR L+GP +
Sbjct: 83 PYAIIDARDFIKLLARNVPLAQAQKIFQTDITCDIINISVKGGSVRRFVKRRDRLIGPQA 142
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
TLKALEILTGCY+LVQG TVA MG KG + VR IVEDCM N +HP+Y +K L++K+EL
Sbjct: 143 QTLKALEILTGCYVLVQGKTVAVMGPVKGTQMVRSIVEDCMNN-IHPIYGLKQLLIKREL 201
Query: 222 EKDPALANENWDRFLPKFKKKN---VKQKKVKSKEK------------KPYTPFPPPPQP 266
K + +E+W RF+P +KK KQK V+ +K K + FPP P
Sbjct: 202 SKREDMKHEDWSRFIPVYKKTQPNKEKQKAVRKMKKERMKEAKRKQAGKEKSIFPPAPPK 261
Query: 267 SKIDKLLESGEYFLSERKK 285
D +ESG+ FL+ R++
Sbjct: 262 RLEDIAMESGQAFLAPRQR 280
>gi|387597248|gb|EIJ94868.1| ribosomal RNA assembly protein mis3 [Nematocida parisii ERTm1]
Length = 294
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 176/260 (67%), Gaps = 4/260 (1%)
Query: 38 DPFWNEG--GMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVST 95
+PF +G LE SSF +FP++REKY++E ++ AL + ++ ++ E + V T
Sbjct: 32 EPFTEKGLKQFLETSSFEVMFPKHREKYIRETEEYIRKALAQRRLALIVDYHELILKVET 91
Query: 96 TRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQH 155
T TRDPY+I++ RD ++L+SR VP +AI++ +D + DII I RNKE F+KRR+
Sbjct: 92 TPHTRDPYVIMEGRDALKLVSRGVPLEKAIRVFEDGITHDIIPINVFTRNKEIFLKRRER 151
Query: 156 LVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKIL 215
L+GP +T+K+LE+LT CYIL GNTV+A+G++K LK+VR +V CM+N +HP+Y IK L
Sbjct: 152 LIGPRGNTIKSLELLTDCYILSFGNTVSAIGNYKSLKEVRNVVTKCMEN-IHPIYEIKKL 210
Query: 216 MVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLES 275
M+++ELEKDPAL ENW+R++P++KK + K++KV EK FP P Q K DK + S
Sbjct: 211 MIRRELEKDPALKTENWERYMPQYKKTHSKKRKVTIVEKTYRNTFPEPEQ-RKQDKEMMS 269
Query: 276 GEYFLSERKKESKKWQEKQE 295
G Y +R K++ K+E
Sbjct: 270 GTYVHKDRPKKNSSPNTKKE 289
>gi|387593593|gb|EIJ88617.1| ribosomal RNA assembly protein mis3 [Nematocida parisii ERTm3]
Length = 294
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 176/260 (67%), Gaps = 4/260 (1%)
Query: 38 DPFWNEG--GMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVST 95
+PF +G LE SSF +FP++REKY++E ++ AL + ++ ++ E + V T
Sbjct: 32 EPFTEKGLKQFLETSSFEVMFPKHREKYIRETEEYIRKALAQRRLALIVDYHELILKVET 91
Query: 96 TRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQH 155
T TRDPY+I++ RD ++L+SR VP +AI++ +D + DII I RNKE F+KRR+
Sbjct: 92 TPHTRDPYVIMEGRDALKLVSRGVPLEKAIRVFEDGITHDIIPINVFTRNKEIFLKRRER 151
Query: 156 LVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKIL 215
L+GP +T+K+LE+LT CYIL GNTV+A+G++K LK+VR +V CM+N +HP+Y IK L
Sbjct: 152 LIGPRGNTIKSLELLTDCYILSFGNTVSAIGNYKSLKEVRNVVTMCMEN-IHPIYEIKKL 210
Query: 216 MVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLES 275
M+++ELEKDPAL ENW+R++P++KK + K++KV EK FP P Q K DK + S
Sbjct: 211 MIRRELEKDPALKTENWERYMPQYKKTHSKKRKVTIVEKTYRNTFPEPEQ-RKQDKEMMS 269
Query: 276 GEYFLSERKKESKKWQEKQE 295
G Y +R K++ K+E
Sbjct: 270 GTYVHKDRPKKNSSPNTKKE 289
>gi|378755182|gb|EHY65209.1| ribosomal RNA assembly protein mis3 [Nematocida sp. 1 ERTm2]
Length = 294
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/267 (43%), Positives = 179/267 (67%), Gaps = 4/267 (1%)
Query: 36 KFDPFWNEG--GMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTV 93
K +PF +G LE SSF +FP++REKY+++ ++ AL + + ++ E + V
Sbjct: 30 KLEPFTEKGLKQFLETSSFEIMFPKHREKYIRDTEEYIRKALAQKTLLLAVDYHELVLKV 89
Query: 94 STTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRR 153
TT TRDPY++++ RD+++L+SR VP +AI++ +D + DII I RNKE F+KRR
Sbjct: 90 ETTPHTRDPYVVLQGRDMLKLVSRGVPLEKAIRVFEDGITHDIIPINVFTRNKEIFLKRR 149
Query: 154 QHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIK 213
+ L+GP +T+K+LE+LT CYIL GNTV+A+G++K LK+VR +V CM+N +HP+Y IK
Sbjct: 150 ERLLGPRGNTIKSLELLTDCYILPFGNTVSAIGNYKSLKEVRTVVTKCMEN-IHPIYEIK 208
Query: 214 ILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLL 273
LM+++ELEKDPAL ENW+R+LPK+KK + K++K EK T F P + K DK +
Sbjct: 209 RLMIRRELEKDPALKTENWERYLPKYKKTHSKKRKTVIVEKTNRTTF-PEQEERKQDKEI 267
Query: 274 ESGEYFLSERKKESKKWQEKQEKQAEK 300
SG Y +R S+K + ++ +E+
Sbjct: 268 MSGAYVPKDRPTRSEKKAKAEKDSSEQ 294
>gi|440296337|gb|ELP89164.1| hypothetical protein EIN_485560 [Entamoeba invadens IP1]
Length = 255
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 163/251 (64%), Gaps = 16/251 (6%)
Query: 27 PNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNL 86
P + W + F P N G++E S FS FP++RE Y++ P + L+E+ + +++
Sbjct: 2 PRTNIWTLTSFKPEDNPHGLVEESQFSVAFPKFREAYIKSILPALVAKLEEFKLKIDVDY 61
Query: 87 VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNK 146
++GS + TTRKT DP+II+K RD+++L+ R A KIL D+ CDIIKIGN+V ++
Sbjct: 62 LQGSFVIKTTRKTFDPFIIIKGRDMLKLIGRGADLELASKILLDDYWCDIIKIGNMVVDR 121
Query: 147 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
+R VKRRQ LVGPN +T KA+EILT C +VQG TVA +G +GLK VR+IVEDCM N +
Sbjct: 122 KRLVKRRQRLVGPNGATQKAIEILTECQFIVQGKTVAVIGKPEGLKLVRKIVEDCMNN-I 180
Query: 207 HPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP---------- 256
HPVY+IK LM++KEL K+ + +E+WDR++PK+ KK +K + K +
Sbjct: 181 HPVYNIKSLMIRKELAKNDKMKSESWDRYIPKYVKKYRPEKTEEEKLRIKKKKEIKRKII 240
Query: 257 -----YTPFPP 262
YTPFPP
Sbjct: 241 ERKKNYTPFPP 251
>gi|160331564|ref|XP_001712489.1| rip1 [Hemiselmis andersenii]
gi|159765937|gb|ABW98164.1| rip1 [Hemiselmis andersenii]
Length = 283
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 147/204 (72%), Gaps = 1/204 (0%)
Query: 43 EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDP 102
+G ++ + +FP+Y+EK ++E+W ++K L + + L+L G + VSTT+ T DP
Sbjct: 19 KGSLVCATKMKIVFPKYQEKKIKESWKIIKKILNSFSIYSHLDLSFGFILVSTTKFTNDP 78
Query: 103 YIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSS 162
+ I+K RD ++L+SR VP QA KI +DE+ C+I+KI + +NK F+KRR+ L+G N S
Sbjct: 79 FSIIKGRDFLKLISRGVPVEQAAKIFEDEIICEILKISHFSKNKNIFLKRRRRLIGNNGS 138
Query: 163 TLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELE 222
T++A+E++T +ILVQGNTV+ MG+ GLKQVR+IV+DCM N +HP++HIK L++K+EL
Sbjct: 139 TVRAIEMITKTFILVQGNTVSIMGNHSGLKQVRKIVQDCMNN-IHPIFHIKNLIIKQELS 197
Query: 223 KDPALANENWDRFLPKFKKKNVKQ 246
KD L ENWD++LP KKKN Q
Sbjct: 198 KDKFLKKENWDQYLPLLKKKNFNQ 221
>gi|399949834|gb|AFP65491.1| Rev interacting protein Rip-1-like protein [Chroomonas
mesostigmatica CCMP1168]
Length = 282
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 150/205 (73%), Gaps = 3/205 (1%)
Query: 42 NEGGMLEVSS--FSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKT 99
N G + VS F +FP+Y+EKY++E+W ++ LK Y + L++ GS+T++TT+ T
Sbjct: 15 NFSGNVLVSDTFFYIIFPKYQEKYIRESWKIIYRILKSYFIKPFLDISNGSITITTTKFT 74
Query: 100 RDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGP 159
+DP +I+KAR + L+SRSVP QA KI DDE+ DIIKI + RNK+ F+KRR+ L+G
Sbjct: 75 KDPCVILKARAFLLLISRSVPVQQAAKIFDDEISFDIIKISSFTRNKKLFLKRRKRLIGL 134
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N ST++A+E+ T Y+LVQGNTV+ MG+ G+KQ R+IVEDCM+N +HP++HIKILM K+
Sbjct: 135 NGSTIRAIEMATQTYMLVQGNTVSCMGTHAGIKQSRKIVEDCMKN-VHPIFHIKILMTKQ 193
Query: 220 ELEKDPALANENWDRFLPKFKKKNV 244
EL KDP L +W++++P KKN+
Sbjct: 194 ELSKDPTLQFVSWEKYIPFLNKKNL 218
>gi|339234367|ref|XP_003382300.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
gi|316978674|gb|EFV61623.1| KRR1 small subunit processome component-like protein [Trichinella
spiralis]
Length = 167
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/161 (59%), Positives = 127/161 (78%), Gaps = 2/161 (1%)
Query: 25 EDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCEL 84
E NI WK+ F N G+L S+F+TLFP+YREKYL+E +P+++ AL E+G+ E+
Sbjct: 9 ESSNI--WKIPSFTQKDNPQGLLCESNFATLFPKYREKYLRECFPLLQKALSEHGIKAEM 66
Query: 85 NLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR 144
+ + GSMTV TTRKT DPY+I+KARDLI+LL+RSVP QA++IL+D+ CDIIKI LVR
Sbjct: 67 DALRGSMTVRTTRKTWDPYVILKARDLIKLLARSVPIEQAVRILEDDTACDIIKISGLVR 126
Query: 145 NKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAM 185
N+ RFVKRRQ L+GPN TLKA+E+LT CYI++QGNTV+A+
Sbjct: 127 NRVRFVKRRQRLIGPNGCTLKAIELLTNCYIMIQGNTVSAV 167
>gi|303388924|ref|XP_003072695.1| putative RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
gi|303301837|gb|ADM11335.1| putative RNA-binding protein [Encephalitozoon intestinalis ATCC
50506]
Length = 282
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 162/243 (66%), Gaps = 5/243 (2%)
Query: 38 DPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTR 97
D F +E E+SS + +FP+YREKY+++ ++ AL+ +SC++++ E ++ V T R
Sbjct: 10 DDFKHE--FAEMSSETVMFPKYREKYIEQTQKYIEKALEAKKISCKIDMGERTIDVMTNR 67
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLV 157
TRDP+I VKA + ++L+SR V +A+K+L+DE C+++ I + +++ F KRR L+
Sbjct: 68 STRDPFIFVKAVNFVKLVSRGVGIEEAMKVLEDEYFCEVVDIKKMASSEKVFEKRRDRLI 127
Query: 158 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMV 217
GP TLKA++ILT C++LV G TV+ +GSFKG+++V++IV DCM N +HP+Y I+ L+
Sbjct: 128 GPKEMTLKAIQILTKCHVLVHGKTVSIIGSFKGIEEVKKIVVDCMNN-IHPMYQIRSLIE 186
Query: 218 KKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGE 277
K++LE+D + E+W RFLPK KK N K KK P P + I+ +E+GE
Sbjct: 187 KRKLEEDKSKEGEDWSRFLPKIKKSNKKSKKKVVGRPSGNMPLDVPKRKEDIE--METGE 244
Query: 278 YFL 280
YF+
Sbjct: 245 YFV 247
>gi|449328995|gb|AGE95270.1| hypothetical protein ECU04_0510 [Encephalitozoon cuniculi]
Length = 283
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 154/235 (65%), Gaps = 2/235 (0%)
Query: 48 EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVK 107
E+SS + +FP+YREKY+++ + AL+ +SC ++L + + V T R TRDP+I +K
Sbjct: 18 EMSSEAVMFPKYREKYIEQTQKYIVRALEAKKISCRIDLEKRVIDVMTNRSTRDPFIFIK 77
Query: 108 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL 167
A + ++L+ R V +A+K+L+DE C++I I +V + + F KRR LVGP TLKA+
Sbjct: 78 AVNFVKLVGRGVGIEEAMKVLEDEYFCEVIDIKKMVSSDKVFEKRRDRLVGPKEMTLKAI 137
Query: 168 EILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPAL 227
+ILT CY+LV G TV+ +GSF+G+++ ++IV DCM N +HP+Y IK L+ K+++E D
Sbjct: 138 QILTRCYVLVHGKTVSIIGSFRGVEEAKKIVVDCMNN-IHPMYQIKRLVEKRKMESDETK 196
Query: 228 ANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSE 282
NE+W RFLP+ KK + K KK K +P P K D +E+GEYF+ +
Sbjct: 197 ENEDWSRFLPQVKKSSKKSKKKKVA-GRPTGNMPEDAAKRKEDIEMETGEYFVRD 250
>gi|19074128|ref|NP_584734.1| similarity to HYPOTHETICAL PROTEIN YCF9_yeast [Encephalitozoon
cuniculi GB-M1]
gi|19068770|emb|CAD25238.1| similarity to HYPOTHETICAL PROTEIN YCF9_yeast [Encephalitozoon
cuniculi GB-M1]
Length = 283
Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 153/235 (65%), Gaps = 2/235 (0%)
Query: 48 EVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVK 107
E+SS + +FP+YREKY+++ + AL+ +SC ++L + + V T R TRDP+I +K
Sbjct: 18 EMSSEAVMFPKYREKYIEQTQKYIVRALEAKKISCRIDLEKRVIDVMTNRSTRDPFIFIK 77
Query: 108 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL 167
A + ++L+ R V +A+K+L+DE C++I I +V + + F KRR LVGP TLKA+
Sbjct: 78 AVNFVKLVGRGVGIEEAMKVLEDEYFCEVIDIKKMVSSDKVFEKRRDRLVGPKEMTLKAI 137
Query: 168 EILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPAL 227
+ILT CY+LV G TV+ +G F+G+++ ++IV DCM N +HP+Y IK L+ K+++E D
Sbjct: 138 QILTRCYVLVHGKTVSIIGGFRGVEEAKKIVVDCMNN-IHPMYQIKRLVEKRKMESDETK 196
Query: 228 ANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSE 282
NE+W RFLP+ KK+ K+ K K +P P K D +E+GEYF+ +
Sbjct: 197 ENEDWSRFLPQ-VKKSSKKSKKKKVVGRPTGNMPEDAAKRKEDIEMETGEYFVRD 250
>gi|401825966|ref|XP_003887077.1| putative RNA-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392998235|gb|AFM98096.1| putative RNA-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 278
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 153/234 (65%), Gaps = 3/234 (1%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+EVSS S ++P+YREKY+++ + AL+ +SC ++L + + V+T + TRDP+I
Sbjct: 16 FVEVSSESVMYPKYREKYIEQTQKYIVKALEGKKISCNIDLEKRIIDVATNKSTRDPFIF 75
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+KA + ++L+SR V +A+K+L+DE C++I I L + + F KRR L+GP TLK
Sbjct: 76 IKAVNFVKLVSRGVGVEEAMKVLEDEYFCEVIDIKRLASSDKVFEKRRDRLIGPKEMTLK 135
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
A++ILT CY+LV G TV+ +GSFKG+++V++IV DCM N +HP+Y IK L+ K++LE D
Sbjct: 136 AIQILTKCYVLVHGKTVSIIGSFKGIEEVKKIVIDCMNN-IHPMYQIKKLVEKRKLEGDK 194
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYF 279
E+W RFLP+ KK N K KK +P P K D +E+GEYF
Sbjct: 195 TKEGEDWSRFLPEIKKSNKKSKKKIV--GRPSGGMPSDIPKRKEDIEMETGEYF 246
>gi|396081198|gb|AFN82816.1| putative RNA-binding protein [Encephalitozoon romaleae SJ-2008]
Length = 281
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 157/243 (64%), Gaps = 7/243 (2%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+E+SS + +FP+YREKY+++ + AL+ +SC+++L + + V T + TRDP+I
Sbjct: 16 FVEMSSEAVMFPKYREKYIEQTQKYIIKALEGKKISCKIDLEKRVIDVETNKSTRDPFIF 75
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+KA + ++L+SR V +A+K+L+DE C++I I L + + F KRR L+GP TLK
Sbjct: 76 IKAVNFVKLVSRGVGVEEAMKVLEDEYFCEVIDIKKLASSDKVFEKRRDRLIGPKEMTLK 135
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
A++ILT CY+LV G TV+ +GSF+G+++V++IV DCM N +HP+Y IK L+ K++LE D
Sbjct: 136 AIQILTKCYVLVHGKTVSIIGSFRGIEEVKKIVIDCMNN-IHPMYQIKKLVEKRKLEGDI 194
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLESGEYF----LS 281
E+W RFLP+ KK N K KK P P + I+ +E+GEYF LS
Sbjct: 195 TKEGEDWSRFLPEIKKSNKKSKKKIIGRHSGNMPSDIPKRKEDIE--METGEYFTDRELS 252
Query: 282 ERK 284
RK
Sbjct: 253 GRK 255
>gi|194387246|dbj|BAG59987.1| unnamed protein product [Homo sapiens]
Length = 177
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 120/161 (74%), Gaps = 5/161 (3%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVQ 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKAL 167
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLK
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKVF 175
>gi|256068106|ref|XP_002570691.1| hypothetical protein [Schistosoma mansoni]
Length = 180
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 127/178 (71%), Gaps = 8/178 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 139
+ E+++ E +M V TT KT DP+II+KARD+IRLL+RSVP QAI++LDDE DII+I
Sbjct: 2 IRVEIDVAESTMEVRTTPKTFDPFIILKARDVIRLLARSVPMEQAIRVLDDETFADIIEI 61
Query: 140 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
+ N+ERFVKRR L+G + TLKALE+ T CYI+VQG TV+ +G + LK+VR+IV+
Sbjct: 62 N--LTNRERFVKRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQ 119
Query: 200 DCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY 257
C+ + +HP Y IK L++ K+L DP N +WDRFLPK K KKV S+ +KP+
Sbjct: 120 GCIYDNIHPAYSIKRLLIIKKLSMDPTKQNISWDRFLPKMK------KKVLSRRRKPH 171
>gi|358256270|dbj|GAA57747.1| ribosomal RNA assembly protein, partial [Clonorchis sinensis]
Length = 359
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 128/178 (71%), Gaps = 8/178 (4%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 139
+ EL+L E SM V TT KT DP+II+KARD++RLL+RSVP QAI++L D++ D+I+I
Sbjct: 2 IRAELDLTESSMEVRTTPKTFDPFIILKARDVMRLLARSVPFEQAIRVLQDDIFSDVIEI 61
Query: 140 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
+ N+ERF+KRR L+G TLKALE+ T CYI+VQG TV+A+G ++ LKQVR+IV
Sbjct: 62 N--LTNRERFIKRRNRLIGYEGETLKALELSTNCYIVVQGKTVSAIGHYEDLKQVRKIVL 119
Query: 200 DCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY 257
C+ + +HP Y IK L++ K+L+ DP + +WDRFLPK K KKV S+ +KP+
Sbjct: 120 GCIYDNIHPAYSIKRLLIIKKLQADPTKKDVSWDRFLPKLK------KKVLSRRRKPH 171
>gi|353233461|emb|CCD80816.1| hypothetical protein Smp_115060 [Schistosoma mansoni]
Length = 168
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 120/167 (71%), Gaps = 8/167 (4%)
Query: 91 MTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFV 150
M V TT KT DP+II+KARD+IRLL+RSVP QAI++LDDE DII+I + N+ERFV
Sbjct: 1 MEVRTTPKTFDPFIILKARDVIRLLARSVPMEQAIRVLDDETFADIIEIN--LTNRERFV 58
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVY 210
KRR L+G + TLKALE+ T CYI+VQG TV+ +G + LK+VR+IV+ C+ + +HP Y
Sbjct: 59 KRRNRLIGHDGETLKALELSTNCYIVVQGKTVSVVGRYNDLKEVRKIVQGCIYDNIHPAY 118
Query: 211 HIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPY 257
IK L++ K+L DP N +WDRFLPK K KKV S+ +KP+
Sbjct: 119 SIKRLLIIKKLSMDPTKQNISWDRFLPKMK------KKVLSRRRKPH 159
>gi|300709315|ref|XP_002996823.1| hypothetical protein NCER_100010 [Nosema ceranae BRL01]
gi|239606149|gb|EEQ83152.1| hypothetical protein NCER_100010 [Nosema ceranae BRL01]
Length = 228
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 135/207 (65%)
Query: 36 KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVST 95
KFD + E++ F +P+YR+KY+++ + AL+ +SC ++ VE S+ V T
Sbjct: 5 KFDEKDFKNSFKEINKFLVYYPKYRDKYIEQVNKYIIKALENKKLSCNIDSVERSIEVFT 64
Query: 96 TRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQH 155
KTRDP+I VK D IRL++++V A+K+L+DE +II+I +V++++ F KRR
Sbjct: 65 NTKTRDPFIFVKGCDFIRLVAKNVDVETAMKVLEDEYCGEIIEIRKMVKSEKVFTKRRDR 124
Query: 156 LVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKIL 215
L+G NS LKAL++++ CYI + G + +GS+ GL V++IV DC+ N HP+Y IK L
Sbjct: 125 LIGKNSMVLKALKMISKCYIYITGKHIGVVGSYDGLTVVKQIVYDCIANNKHPIYEIKKL 184
Query: 216 MVKKELEKDPALANENWDRFLPKFKKK 242
+VK +L +D + NE+W R +P +KK+
Sbjct: 185 IVKNQLGEDKEMENEDWKRHIPDYKKR 211
>gi|296086789|emb|CBI32938.3| unnamed protein product [Vitis vinifera]
Length = 96
Score = 173 bits (439), Expect = 1e-40, Method: Composition-based stats.
Identities = 81/93 (87%), Positives = 88/93 (94%)
Query: 132 MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
MQC+IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCY LVQGNTV AMGSFKGL
Sbjct: 1 MQCNIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYTLVQGNTVTAMGSFKGL 60
Query: 192 KQVRRIVEDCMQNKMHPVYHIKILMVKKELEKD 224
KQVRR+VEDC+QNKMHPVYH+K LM+K+EL +
Sbjct: 61 KQVRRVVEDCIQNKMHPVYHVKTLMMKRELASE 93
>gi|330040298|ref|XP_003239843.1| Rev interacting protein Rip-1-like protein [Cryptomonas paramecium]
gi|327206768|gb|AEA38945.1| Rev interacting protein Rip-1-like protein [Cryptomonas paramecium]
Length = 241
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 140/225 (62%), Gaps = 12/225 (5%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
S F LFP+Y+E ++E+W +K Y + +LNL G + +S + T+DP++I+KAR
Sbjct: 21 SKFVVLFPKYQENCIKESWKTIKKIFFFYKLKLKLNLKFGFIEISNSLNTKDPFVIIKAR 80
Query: 110 DLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEI 169
D ++L++RSVP QA KI DD++ CDIIKI NK F+K+R++L+G +K +E+
Sbjct: 81 DFVKLIARSVPVRQAAKIFDDQIFCDIIKISRSNCNKFNFLKKRKNLIGKKGIVVKIIEV 140
Query: 170 LTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALAN 229
+T CY+++QGNTV+ MG G+K VR IVE+ K+HP+ +IK+L++K++L N
Sbjct: 141 ITQCYLIIQGNTVSCMGQHLGIKYVRNIVENS-TFKIHPILYIKMLIMKQKLYNILKFNN 199
Query: 230 ENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLE 274
+NW+++LP F K K P T QP+ I+ L+
Sbjct: 200 QNWEKYLPFFNTK-----------KLPSTSKILKNQPNTINLFLQ 233
>gi|162606356|ref|XP_001713208.1| Rev interacting protein Rip-1-like protein [Guillardia theta]
gi|12580674|emb|CAC26992.1| Rev interacting protein Rip-1-like protein [Guillardia theta]
Length = 262
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 127/202 (62%), Gaps = 2/202 (0%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N ++EVS F FP+Y+E Y++E W ++ +K + +N+ G + + + K D
Sbjct: 20 NITNLIEVSCFKIKFPKYQENYIKENWHIINRIMKIRSIVVTINVNLGLVEIMNSLKGFD 79
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY I+KA+D I L+ R VP QA KI D++ C+IIKI +++ F+K+R+ L+G N
Sbjct: 80 PYSIIKAKDFITLVCRGVPIFQASKIFKDDIFCEIIKISKFTSSRQSFLKKRKRLIGNNG 139
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
T+K +E+LT CYIL+QGNTVA MG F+ LK I+ M N HP++++K + +KK+L
Sbjct: 140 VTVKTIELLTKCYILIQGNTVACMGKFRDLKWCINIITKSMTNN-HPIFYLKNIQIKKKL 198
Query: 222 EKDPALANENWDRFLPKFKKKN 243
D +NWD++L F+KKN
Sbjct: 199 MNDEFFKTKNWDKYLL-FEKKN 219
>gi|402469222|gb|EJW04243.1| hypothetical protein EDEG_01475 [Edhazardia aedis USNM 41457]
Length = 331
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 129/213 (60%), Gaps = 3/213 (1%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
+KV +F+ + E S F+ +FP +R++Y+++ ++ L E + E+N + +
Sbjct: 3 FKVPEFNDDDYKDEFTEQSEFTVVFPDWRKQYIKDKQEKIEELLTEKKLKLEVNYEDKIL 62
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR--NKERF 149
V TT KTRDPYII+K RD I L+SR +A KI +D + C++I I L + NK F
Sbjct: 63 KVLTTNKTRDPYIIIKGRDFINLISRGAVFEEATKIFNDNVFCEVINIKQLAKSSNKAVF 122
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
R+ L G N T+KAL++LT YI ++G ++ +G +KG+ +V IVE QN+ HPV
Sbjct: 123 QNRKHRLEGKNGDTIKALQLLTKTYITMEGKSLCVVGKYKGINEVSDIVEKVFQNQ-HPV 181
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKK 242
Y +K L+ K+ELE D + +++W R LP+ + K
Sbjct: 182 YLLKRLLAKRELENDKEIKDQDWTRLLPEVRSK 214
>gi|440491940|gb|ELQ74542.1| rRNA processing protein [Trachipleistophora hominis]
Length = 246
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 1/207 (0%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
LE S F ++ ++ E L+E +K LKE V ++N E + +STT KTRDPY+I
Sbjct: 12 FLEKSRFEIVYARHLESTLKENQKRIKALLKEKNVRIKINYDERVVQMSTTSKTRDPYVI 71
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+K++D I L+ + VP +A +I DDE+ ++ I L NKE F+ RR L+GPN TLK
Sbjct: 72 IKSKDFITLVCKGVPLQEAERIFDDEISYAMLNIQQLASNKEVFINRRNRLIGPNGDTLK 131
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
ALE+LT YIL++ V +GSF + +V + V M+N HPV+ +K L+ KKE+E+
Sbjct: 132 ALEMLTKTYILMKSKCVCVIGSFANVLKVEQFVLKVMEN-YHPVHLLKQLVAKKEVEQCT 190
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSK 252
+ NW F+P KKK K+ K K
Sbjct: 191 EKKDMNWKNFVPVVKKKTGGSKQTKRK 217
>gi|351712286|gb|EHB15205.1| KRR1 small subunit processome component-like protein
[Heterocephalus glaber]
Length = 219
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 130/198 (65%), Gaps = 17/198 (8%)
Query: 151 KRRQHLVGPNSSTLKALE-ILTGC--------YILVQGNTVAAMGSFKGLKQVRRIVEDC 201
KR +H+ ++TL +E +T C YI+++GNTV+A+G F GLK+VR++V D
Sbjct: 10 KRTEHI----NATLDLIEGSMTVCTSKKTFDPYIIIRGNTVSAIGPFSGLKEVRKVVLDT 65
Query: 202 MQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTP 259
M+N +HP+Y+IK LM+K+EL KD L +++W+RFL +FK KNV ++K K+ YTP
Sbjct: 66 MKN-IHPIYYIKTLMIKRELAKDSELRSQSWERFLSQFKHKNVNKRKEPKKKTVKKEYTP 124
Query: 260 FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 319
FPPP S++DK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 125 FPPPQPESQVDKELASGEYFLKANQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKEKP 184
Query: 320 RQNSCEAEDKTN-DVAAM 336
S EA +T DVA +
Sbjct: 185 VAKSKEASTETKIDVATI 202
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDL 111
++ L+L+EGSMTV T++KT DPYII++ +
Sbjct: 15 INATLDLIEGSMTVCTSKKTFDPYIIIRGNTV 46
>gi|147791307|emb|CAN74500.1| hypothetical protein VITISV_013002 [Vitis vinifera]
Length = 97
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 75/84 (89%), Gaps = 1/84 (1%)
Query: 5 MEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYL 64
+E+ KHKGKHDKPKPWD DP+IDHWKV+KFDP WNEGGMLEVSSFSTLFPQYREKYL
Sbjct: 10 VERKEKTKHKGKHDKPKPWD-DPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYL 68
Query: 65 QEAWPMVKGALKEYGVSCELNLVE 88
QEAWP V+GALKE+GV ELNLV+
Sbjct: 69 QEAWPTVRGALKEFGVKSELNLVQ 92
>gi|148689795|gb|EDL21742.1| KRR1, small subunit (SSU) processome component, homolog (yeast),
isoform CRA_a [Mus musculus]
Length = 198
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 114/164 (69%), Gaps = 4/164 (2%)
Query: 176 LVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRF 235
+VQGNTV+A+G F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RF
Sbjct: 1 MVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERF 59
Query: 236 LPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 293
LP+FK KNV ++K K+ YTPFPPP S+IDK L SGEYFL +K+ +K +
Sbjct: 60 LPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAI 119
Query: 294 QEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ KQAE + + +R+ AFIPP+E EA +T DVAA+
Sbjct: 120 KAKQAEALTKRQEERNKAFIPPKEKPAVKPKEASTETKIDVAAI 163
>gi|429966251|gb|ELA48248.1| hypothetical protein VCUG_00289 [Vavraia culicis 'floridensis']
Length = 246
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 130/226 (57%), Gaps = 5/226 (2%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
S F ++ ++ E L+E++ ++ L+E + +++ E + VSTT KTRDPY+I+K++
Sbjct: 16 SRFEIVYAKHLEDSLKESYKSMRTLLREKNIRIKMDRDERLIQVSTTSKTRDPYVILKSK 75
Query: 110 DLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEI 169
D + L+ + VP +A K+ DD M I I L +KE F+ RR L+GPN TL AL++
Sbjct: 76 DFVTLICKGVPLEEAQKVFDDNMSYAWINIQALASDKEVFINRRNRLIGPNGDTLTALKM 135
Query: 170 LTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALAN 229
LT YILV+ +V +G F + QV + V M+N HPV+ +K +M KKE+E+ +
Sbjct: 136 LTKTYILVKSKSVCVIGPFASVLQVEQFVLKVMEN-YHPVHLLKQMMAKKEVEQCADKKD 194
Query: 230 ENWDRFLPKFKKKNVKQKKVK----SKEKKPYTPFPPPPQPSKIDK 271
NW F+P KKK KKVK +E K + P + +I K
Sbjct: 195 MNWKNFVPVVKKKIGGSKKVKRQFNVREGKLFMDMPVRKEDVEIVK 240
>gi|429962930|gb|ELA42474.1| hypothetical protein VICG_00573 [Vittaforma corneae ATCC 50505]
Length = 289
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 142/249 (57%), Gaps = 11/249 (4%)
Query: 32 WKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSM 91
+K FD LEVS F LFP++R +YL+ A + V E++ + +M
Sbjct: 16 FKASTFDESKVRHSFLEVSVFEVLFPKHRAQYLKGVESYAIKACEVKKVHFEVDYDKFTM 75
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVK 151
VSTT +TRDPYII+KA ++I+LL R V A+K+L+D + ++++ L ++ F +
Sbjct: 76 RVSTTDRTRDPYIIIKAYEMIQLLGRGVTLENAVKVLEDGIASEVLQARMLCSTEKIFER 135
Query: 152 RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
RRQ L P L+++E++T ++L+ TV +G +KG+ + + I+ C +N +HP +
Sbjct: 136 RRQRLSNPK--ILQSIELITKTHVLISNKTVCIVGEYKGVHEAKNIIIKCFEN-IHPAFE 192
Query: 212 IKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYT-PFPPPPQPSKID 270
+K L++KK+L KD A +W+RFLP N+K+ K K+ + T P K D
Sbjct: 193 LKRLIIKKKLMKDNAEG--DWERFLP-----NIKKTHSKKKKTRRETGSMPEEIHERKED 245
Query: 271 KLLESGEYF 279
+++GEYF
Sbjct: 246 LQMQTGEYF 254
>gi|149066985|gb|EDM16718.1| rCG48818, isoform CRA_b [Rattus norvegicus]
Length = 198
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 105/144 (72%), Gaps = 3/144 (2%)
Query: 176 LVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRF 235
+VQGNTV+A+G F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RF
Sbjct: 1 MVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERF 59
Query: 236 LPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEK 293
LP+FK KNV ++K K+ YTPFPPP S++DK L SGEYFL +K+ +K +
Sbjct: 60 LPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQVDKELASGEYFLKANQKKRQKMEAI 119
Query: 294 QEKQAEKTAENKRKRDAAFIPPEE 317
+ KQAE + + +R+ AFIPP+E
Sbjct: 120 KAKQAEALTKRQEERNKAFIPPKE 143
>gi|342181643|emb|CCC91123.1| putative ribosomal RNA assembly protein [Trypanosoma congolense
IL3000]
Length = 177
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 44 GGMLEV--SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
GG V ++F+T FP Y E Y++ WP V+ LK++ ++ +L+L+EGSMTV+TTR+T D
Sbjct: 21 GGACCVDETTFATQFPSYLESYIRSIWPAVEMVLKQHQLTGKLDLMEGSMTVATTRRTWD 80
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY IVKARD IRLL+R+VP QA KI E+ CDII I ++ RFVKRR LVGP
Sbjct: 81 PYSIVKARDFIRLLARNVPLAQAQKIFQTEITCDIIPISLKGKSTRRFVKRRDRLVGPQG 140
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGL 191
S K G G GS K L
Sbjct: 141 SDTKGTGNTHGLLRSCAGENSCGYGSCKRL 170
>gi|269860430|ref|XP_002649936.1| RNA-binding protein, predicted [Enterocytozoon bieneusi H348]
gi|220066623|gb|EED44098.1| RNA-binding protein, predicted [Enterocytozoon bieneusi H348]
Length = 220
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 112/202 (55%), Gaps = 5/202 (2%)
Query: 36 KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVST 95
KFD + +E++ +S LF + R Y++ ++ A++ ++ E+N +M V T
Sbjct: 7 KFDESVFKHEFVEMTEYSVLFAKSRSNYIKSIEKYLQKAVEAKKLTFEINWNTNTMFVRT 66
Query: 96 TRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQH 155
+ TRDPYII+KA++L+ L+S+ V I +L+D + +II I L RN + RR
Sbjct: 67 NKMTRDPYIIIKAQELLELISKGVLLENCINLLEDGVFSEIIYINVLTRNPTVYENRRNR 126
Query: 156 LVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKIL 215
L P LKALEIL+ I V TV +G G+ VR +V +N +HP Y IK L
Sbjct: 127 LSNP--KVLKALEILSKTKITVGTKTVCVVGDHDGIDVVRNVVLKAFKN-IHPAYEIKAL 183
Query: 216 MVKKELEKDPALANENWDRFLP 237
M+K +L KD +WDRFLP
Sbjct: 184 MIKHKLSKDN--IEGDWDRFLP 203
>gi|294951882|ref|XP_002787157.1| Ribosomal RNA assembly protein mis3, putative [Perkinsus marinus
ATCC 50983]
gi|239901838|gb|EER18953.1| Ribosomal RNA assembly protein mis3, putative [Perkinsus marinus
ATCC 50983]
Length = 141
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 91/132 (68%), Gaps = 2/132 (1%)
Query: 185 MGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV 244
MG+ K LKQVRRIVEDC N +HPVYH+K LM+KKELEK+ L +ENWDRFLP FK +NV
Sbjct: 1 MGTHKALKQVRRIVEDCFHN-VHPVYHVKELMIKKELEKNEDLKDENWDRFLPHFKNRNV 59
Query: 245 KQKKVKSKEKKPYTP-FPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAE 303
++KK K KK FPP P K D +E+GEYFLS+ +K S + +K+E Q + + +
Sbjct: 60 QRKKQKKIAKKKSKELFPPEQLPRKEDIQIETGEYFLSKDQKHSNEMTKKREHQKQVSEQ 119
Query: 304 NKRKRDAAFIPP 315
KR+R+ + P
Sbjct: 120 RKREREEMYSQP 131
>gi|149478667|ref|XP_001516023.1| PREDICTED: KRR1 small subunit processome component homolog, partial
[Ornithorhynchus anatinus]
Length = 179
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 92/126 (73%), Gaps = 3/126 (2%)
Query: 194 VRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKV--KS 251
VR++V D M+N +HP+Y+IK LM+K+EL KD L +NW+RFLPKFK KN+ ++K K
Sbjct: 1 VRKVVLDTMKN-IHPIYNIKTLMIKRELSKDSELRTQNWERFLPKFKHKNLNKRKEPNKK 59
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
K KK YTPFPPP S+IDK L SGEYFL +K+ +K +E + KQAE ++ + +R+ A
Sbjct: 60 KVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEEIKAKQAEVLSKRQAERNKA 119
Query: 312 FIPPEE 317
FIPP+E
Sbjct: 120 FIPPKE 125
>gi|345310359|ref|XP_001517030.2| PREDICTED: KRR1 small subunit processome component homolog, partial
[Ornithorhynchus anatinus]
Length = 207
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 72/94 (76%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL+E+ V L+L+EG
Sbjct: 114 DGWKEPTFTKDDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALQEHHVKATLDLIEG 173
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQ 123
SMTV TT+KT DPY+I++ARDLI+LL+RSVP Q
Sbjct: 174 SMTVCTTKKTFDPYVIIRARDLIKLLARSVPFEQ 207
>gi|397617920|gb|EJK64671.1| hypothetical protein THAOC_14573, partial [Thalassiosira oceanica]
Length = 126
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 5/104 (4%)
Query: 10 NKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNE----GGMLEVSSFSTLFPQYREKYLQ 65
KK+ K+ + KPWD + +IDHW+ +D + G +LE SSF+TLFP+YREKYL+
Sbjct: 24 GKKNHNKYRRDKPWD-NADIDHWENNPWDESTGDTLPGGRLLEESSFATLFPKYREKYLR 82
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKAR 109
E WP+V L +Y ++CELNLVEGSMTV TT KT DPYII+KAR
Sbjct: 83 EVWPLVTRTLDKYKIACELNLVEGSMTVRTTLKTSDPYIILKAR 126
>gi|429327831|gb|AFZ79591.1| ribosomal RNA assembly protein, putative [Babesia equi]
Length = 147
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 5/102 (4%)
Query: 6 EKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQ 65
EK NKK++ K KPWD D +DHWK+E F N+ +LE SSFS LFP+YREKY+Q
Sbjct: 5 EKGRNKKYR----KDKPWD-DETVDHWKIEPFTSEDNKPSLLEESSFSILFPKYREKYIQ 59
Query: 66 EAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVK 107
W VK +L +Y + C+LNLVEGSM+V TT++T DPYII+K
Sbjct: 60 SVWGDVKKSLSDYHIKCDLNLVEGSMSVFTTKRTWDPYIIIK 101
>gi|47180661|emb|CAG14635.1| unnamed protein product [Tetraodon nigroviridis]
Length = 109
Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/96 (55%), Positives = 70/96 (72%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL + + L+L+EG
Sbjct: 10 DGWKEPSFTKEDNPHGLLEESSFATLFPKYREAYLKECWPLVEKALSDVHIKASLDLIEG 69
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAI 125
S+TV TTRKT DPY I++ARDL++L++RSVP Q I
Sbjct: 70 SVTVCTTRKTFDPYAIIRARDLVKLIARSVPFEQVI 105
>gi|356532666|ref|XP_003534892.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal RNA assembly protein
KRR1-like [Glycine max]
Length = 269
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/48 (85%), Positives = 45/48 (93%)
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIK 213
ALEILTGC+ILVQGNT+A MGSF GLKQVRRIVE+CM NKMHPVY+IK
Sbjct: 16 ALEILTGCFILVQGNTIAVMGSFIGLKQVRRIVEECMMNKMHPVYNIK 63
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
+ID LE+GEYFLS ++K QEKQEKQAEKTAE KRKR+ AFIPP+EP+ ++E
Sbjct: 161 QIDIQLETGEYFLSNKRK----XQEKQEKQAEKTAEXKRKREEAFIPPKEPANLVD-KSE 215
Query: 328 DKTNDVAAMAKSLK--EKAKKLRKQKFAENINPEEYIAASGEKPSKKKKSK 376
D ++VA MA SLK ++ KK K+K E IN E YI S E+ S KK K
Sbjct: 216 DANSNVADMAMSLKVNKQTKKFGKRKSEEIINAETYIIGSSEQASGKKSKK 266
>gi|335775908|gb|AEH58729.1| KRR1 small subunit processome component-like protein, partial
[Equus caballus]
Length = 159
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Query: 215 LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKL 272
LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S+IDK
Sbjct: 1 LMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKE 60
Query: 273 LESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN- 331
L SGEYFL +K+ +K + + KQAE ++ + +R AFIPP+E EA +T
Sbjct: 61 LASGEYFLKASQKKRQKMEAVKAKQAEALSKRQEERKKAFIPPKEKPVVKPKEASTETKI 120
Query: 332 DVAAM 336
DVAA+
Sbjct: 121 DVAAI 125
>gi|443926900|gb|ELU45449.1| hypothetical protein AG1IA_00511 [Rhizoctonia solani AG-1 IA]
Length = 183
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 36/138 (26%)
Query: 216 MVKKELEKDPALANENWDRFLPKFKKKNVK--QKKVKSKEKKP----------------- 256
MVK+EL KDP LA E+WDRFLP+F+K+++ QK K +E++
Sbjct: 1 MVKRELAKDPKLATESWDRFLPQFRKRHLTSAQKSAKKRERQEGATNANATPLGDGSAPA 60
Query: 257 -----------------YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAE 299
YTPFPP P K+D LESGEYFL + KE+++ +++ KQAE
Sbjct: 61 PASAPATEKKEKPKKKVYTPFPPAQLPRKVDLELESGEYFLKAKDKEAREEAKRKAKQAE 120
Query: 300 KTAENKRKRDAAFIPPEE 317
TAE K++R+ ++ P E
Sbjct: 121 ATAERKKEREEVYVAPAE 138
>gi|440790290|gb|ELR11573.1| KH domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 100
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Query: 8 TVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGG-MLEVSSFSTLFPQYREKYLQE 66
T KK+ K+ K KPWD D +IDHWKV+ F P N+ G LE SSF+TLFP+YRE YL+E
Sbjct: 15 TPQKKNHKKYRKDKPWDND-SIDHWKVDAFKPEDNKAGSFLEESSFATLFPKYRESYLRE 73
Query: 67 AWPMVKGALKEYGVSCELNLVE 88
+W + ALK+ G+ C LNL+E
Sbjct: 74 SWAAITKALKDVGIDCTLNLIE 95
>gi|323309950|gb|EGA63146.1| Krr1p [Saccharomyces cerevisiae FostersO]
Length = 114
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKT-RDPYIIVKAR-DLIRLLSRSVPAPQ 123
L ++ + C L+LVEGSMTV TTRK R Y R D I RS PA +
Sbjct: 64 LDKHNIXCVLDLVEGSMTVKTTRKNIRSRYHFESQRFDQIIGEIRSFPASR 114
>gi|358346239|ref|XP_003637177.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
gi|355503112|gb|AES84315.1| KRR1 small subunit processome component-like protein [Medicago
truncatula]
Length = 90
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/46 (82%), Positives = 43/46 (93%)
Query: 55 LFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTR 100
FPQYREKYLQEAWP+VK +LKE+G+S ELNLVEGSMTVSTTRKT+
Sbjct: 32 FFPQYREKYLQEAWPLVKSSLKEFGISAELNLVEGSMTVSTTRKTK 77
>gi|429329210|gb|AFZ80969.1| hypothetical protein BEWA_003770 [Babesia equi]
Length = 84
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 5/71 (7%)
Query: 158 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMV 217
GP STLKALE+LT CYIL QG TV S KG+K RRIVEDCM+N +HPVYHIK M+
Sbjct: 18 GPGGSTLKALELLTECYILTQGQTV----SIKGIKVARRIVEDCMKN-VHPVYHIKEFMI 72
Query: 218 KKELEKDPALA 228
K++L + ++
Sbjct: 73 KRDLHAEMVIS 83
>gi|432096557|gb|ELK27204.1| KRR1 small subunit processome component like protein [Myotis
davidii]
Length = 183
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 70/132 (53%), Gaps = 29/132 (21%)
Query: 208 PVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQ 265
P H K LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPF PPPQ
Sbjct: 43 PTVHFKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPF-PPPQ 101
Query: 266 PSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCE 325
P E Q KQAE ++ + +R+ AFIPP+E E
Sbjct: 102 P-------------------------ESQAKQAEALSKRQEERNKAFIPPKEKPVLKPKE 136
Query: 326 AEDKTN-DVAAM 336
A +T DVAA+
Sbjct: 137 ASTETKIDVAAI 148
>gi|47187716|emb|CAF94757.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 14/103 (13%)
Query: 215 LMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKPYTPFPPPPQPSKIDKLLE 274
LM+K+EL KDP L +++W+RFLPKF+ KN+ +++ P+ +D+ L
Sbjct: 3 LMIKRELAKDPELRSQSWERFLPKFRHKNLAKRR--------------EPKKKAVDQELA 48
Query: 275 SGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+GE+FL E K+ KK + + KQAE + K R+ FIPP+E
Sbjct: 49 TGEFFLRESVKKRKKMEAIKVKQAEVLIKKKEARNKHFIPPKE 91
>gi|374636257|ref|ZP_09707834.1| KH domain protein [Methanotorris formicicus Mc-S-70]
gi|373559594|gb|EHP85885.1| KH domain protein [Methanotorris formicicus Mc-S-70]
Length = 194
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
E GV E++ +G +T+ +T K +D KARD++R + R A+K+L DE +I
Sbjct: 41 ELGVELEIS-EDGDVTIYSTEKQKDALATWKARDIVRAIGRGFSPENALKLLSDEYVLEI 99
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
I I ++ + + ++G + K +E LTG + V G TVA +G F ++ +
Sbjct: 100 IDITEYASSENALRRLKGRVIGSGGKSRKYIEDLTGARVSVFGKTVAILGEFDSVQVAKE 159
Query: 197 IVEDCMQNKMHP 208
VE ++ H
Sbjct: 160 AVEMILKGSSHA 171
>gi|15668619|ref|NP_247417.1| putative RNA-processing protein [Methanocaldococcus jannaschii DSM
2661]
gi|2495988|sp|Q57885.1|Y443_METJA RecName: Full=KH domain-containing protein MJ0443
gi|1591147|gb|AAB98430.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 227
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
KE GV E++ +G++T+ T K +DP + KARD++R + R A+K++ DE +
Sbjct: 42 KELGVKLEID-ADGTVTIYGTDKQKDPLAVWKARDIVRAIGRGFNPEIALKLVSDEYVLE 100
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+I I + + + + ++G + + +E LTG + V GNTVA +G + ++ +
Sbjct: 101 VIDIEDYASSDNSIRRLKGRVIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAK 160
Query: 196 RIVEDCMQNKMHP 208
VE ++ H
Sbjct: 161 EAVEMLLRGASHA 173
>gi|289193176|ref|YP_003459117.1| KH domain protein [Methanocaldococcus sp. FS406-22]
gi|288939626|gb|ADC70381.1| KH domain protein [Methanocaldococcus sp. FS406-22]
Length = 218
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
KE GV E++ +G++T+ T K +DP + KA+D++R + R A+K++ DE +
Sbjct: 38 KELGVKLEID-ADGTVTIYGTDKQKDPLAVWKAKDIVRAIGRGFNPEIALKLVSDEYVLE 96
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+I I + ++ + + ++G + + +E LTG + V GNTVA +G + ++ +
Sbjct: 97 VIDIEDYASSENSIRRLKGRVIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAK 156
Query: 196 RIVEDCMQNKMHP 208
VE ++ H
Sbjct: 157 EAVEMLLRGASHA 169
>gi|256810935|ref|YP_003128304.1| putative RNA-processing protein [Methanocaldococcus fervens AG86]
gi|256794135|gb|ACV24804.1| KH domain protein [Methanocaldococcus fervens AG86]
Length = 216
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
KE GV E++ +G++T+ T K +DP + KA+D++R + R A++++ DE +
Sbjct: 38 KELGVKLEIDE-DGTVTIYGTEKQKDPLAVWKAKDIVRAIGRGFNPEIALRLVSDEYVLE 96
Query: 136 IIKIGNLVRNKERFVKR-RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
+I I + N E VKR + ++G + + +E LTG + V GNTVA +G + ++
Sbjct: 97 VIDIEDYA-NSENAVKRLKGRVIGKEGKSRRYIEELTGANVSVYGNTVAIVGEHEPVQVA 155
Query: 195 RRIVEDCMQNKMHP 208
+ VE ++ H
Sbjct: 156 KEAVEMLLRGASHA 169
>gi|333911635|ref|YP_004485368.1| KH domain-containing protein [Methanotorris igneus Kol 5]
gi|333752224|gb|AEF97303.1| KH domain protein [Methanotorris igneus Kol 5]
Length = 194
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
+E GV E++ +G +T+ +T K +D KARD++ + R A+K+L DE +
Sbjct: 40 RELGVELEISK-DGDVTIYSTEKQKDALATWKARDIVMAIGRGFSPENALKLLSDEYVLE 98
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
II I ++ + + ++G + K +E LTG + V G TVA +G F+ ++ +
Sbjct: 99 IIDITEYASSENALRRLKGRVIGSGGKSRKYIEDLTGARVSVFGKTVAILGEFESVQIAK 158
Query: 196 RIVEDCMQNKMHP 208
VE ++ H
Sbjct: 159 EAVEMILRGSSHA 171
>gi|312136521|ref|YP_004003858.1| kh domain-containing protein [Methanothermus fervidus DSM 2088]
gi|311224240|gb|ADP77096.1| KH domain protein [Methanothermus fervidus DSM 2088]
Length = 188
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G +T+ ++ DP ++KARD++R + R A+++L++++ D+I I +
Sbjct: 36 LEIDSESGMVTIIPKSESIDPMYVLKARDIVRAIGRGFSPEVALRLLNEDVMLDVIDISD 95
Query: 142 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED 200
V R+K+ +++ ++G + T + +E +TG I V G TVA +G + ++ R VE
Sbjct: 96 YVGRSKKAIRRQKGRIIGKDGKTRQIIENMTGANISVYGKTVALIGDLEEIRIAREAVEM 155
Query: 201 CMQNKMHPVYH 211
++ H +
Sbjct: 156 LLEGAKHGTVY 166
>gi|448704680|ref|ZP_21700681.1| RNA-processing protein [Halobiforma nitratireducens JCM 10879]
gi|445796078|gb|EMA46591.1| RNA-processing protein [Halobiforma nitratireducens JCM 10879]
Length = 185
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R P +A+++LDDEM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFPPEEALRLLDDEMMMFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G + T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDLQRQKGRLIGEDGRTRELMEELTGASVVIYGSTLGIIGAPEEVDAVRTAA 147
Query: 199 EDCMQNKMH 207
E + H
Sbjct: 148 EMLLDGAPH 156
>gi|448304025|ref|ZP_21493970.1| RNA-processing protein [Natronorubrum sulfidifaciens JCM 14089]
gi|445592112|gb|ELY46304.1| RNA-processing protein [Natronorubrum sulfidifaciens JCM 14089]
Length = 185
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +KA D++R + R P A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAVDTVG---DPVLGLKAPDIVRAIGRGFPPEAALQLLEDEMMMFDLVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 INAAARNKNDLKRKKGRLIGEGGRTRELMEELTGAEVVIYGSTLGTIGTPQQVDIVRTAA 147
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 148 EMLLDGAPHGTVY 160
>gi|297618876|ref|YP_003706981.1| KH domain-containing protein [Methanococcus voltae A3]
gi|297377853|gb|ADI36008.1| KH domain protein [Methanococcus voltae A3]
Length = 186
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 61/114 (53%)
Query: 95 TTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQ 154
+T K D + KARD+++ + R +A+K+L D C+II I +++ ++ +
Sbjct: 51 STDKQVDALSLWKARDIVKAIGRGFSPEKALKLLSDSYMCEIIDISEYANSEKALLRLKG 110
Query: 155 HLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
++G + + +E LTG YI V G TV+ +G F+ ++ + +E ++ H
Sbjct: 111 RIIGSGGKSRRYVEELTGTYISVYGKTVSILGEFEQVQISKDAIEMILKGTSHA 164
>gi|313244425|emb|CBY15218.1| unnamed protein product [Oikopleura dioica]
Length = 197
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFS-TLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVE 88
D WK E+F P N G LE S F TLFP+YREKYL+E P+V+ L Y + CEL+ +E
Sbjct: 131 DGWKPEEFKPEHNPNGCLEESKFRFTLFPKYREKYLKEVRPLVEKFLTLYFLKCELDSIE 190
Query: 89 GSMT 92
GS++
Sbjct: 191 GSIS 194
>gi|448315617|ref|ZP_21505258.1| RNA-processing protein [Natronococcus jeotgali DSM 18795]
gi|445610989|gb|ELY64752.1| RNA-processing protein [Natronococcus jeotgali DSM 18795]
Length = 185
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ GS+ V T DP +K +++R + R P +A+++L DD MQ D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVRGLKGPEIVRAIGRGFPPEEALQLLEDDMMQFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G + T + +E L+G +++ G+T+ A+G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVIYGSTLGAIGTPQQVDAVRTAA 147
Query: 199 EDCMQNKMH 207
E ++ H
Sbjct: 148 EMLLEGAPH 156
>gi|435849099|ref|YP_007311349.1| KH domain protein [Natronococcus occultus SP4]
gi|433675367|gb|AGB39559.1| KH domain protein [Natronococcus occultus SP4]
Length = 185
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 71/133 (53%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIK 138
V +++ GS+ V + DP +K +++R + R P +A+++LDD+M Q D++
Sbjct: 31 VRLDIDSENGSVAVESVG---DPVSGLKGPEIVRAIGRGFPPEEALQLLDDDMMQFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G + T + +E L+G +++ G+T+ A+G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVIYGSTLGAIGTPQQVDAVRTAA 147
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 148 EMLLDGAPHGTVY 160
>gi|26347389|dbj|BAC37343.1| unnamed protein product [Mus musculus]
Length = 131
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 257 YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPE 316
YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+
Sbjct: 16 YTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPK 75
Query: 317 EPSRQNSCEAEDKTN-DVAAM 336
E EA +T DVAA+
Sbjct: 76 EKPAVKPKEASTETKIDVAAI 96
>gi|448320958|ref|ZP_21510441.1| RNA-processing protein [Natronococcus amylolyticus DSM 10524]
gi|445604851|gb|ELY58792.1| RNA-processing protein [Natronococcus amylolyticus DSM 10524]
Length = 185
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ GS+ V T DP +K +++R + R P +A+++L DD MQ DI+
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVRGLKGPEIVRAIGRGFPPEEALQLLEDDMMQLDIVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G + T + +E L+G +++ G+T+ A+G+ + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEDGRTRELMEELSGADVVIYGSTLGAIGTPPEVDAVRTAA 147
Query: 199 EDCMQNKMH 207
E + H
Sbjct: 148 EMLLDGAPH 156
>gi|399576154|ref|ZP_10769911.1| universal archaeal kh domain-containing protein [Halogranum
salarium B-1]
gi|399238865|gb|EJN59792.1| universal archaeal kh domain-containing protein [Halogranum
salarium B-1]
Length = 206
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ + + DP + A D++R + R A+ +LD++M+ D+I
Sbjct: 54 VRLDIDSESGSVAIDSVG---DPVTGLAAPDIVRAIGRGFKPEVALSLLDNDMRMFDLID 110
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
IG RNK +++ L+G N T + +E L+G ++++ G+T+ +G + ++ VRR V
Sbjct: 111 IGEATRNKNDMKRQKGRLIGENGRTRQLMEELSGAHVVIYGSTLGIIGQPEEVETVRRAV 170
Query: 199 EDCMQNKMHPVYHIKILMVKKELEKDPALANENWD 233
+ H + + EL + L+ D
Sbjct: 171 GMILDGAPHGAVYSYLERKHNELSRGAQLSGSTED 205
>gi|448727052|ref|ZP_21709429.1| RNA-processing protein [Halococcus morrhuae DSM 1307]
gi|445792252|gb|EMA42863.1| RNA-processing protein [Halococcus morrhuae DSM 1307]
Length = 182
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DII 137
GV +++ GS+ + + DP +K D++R + R A+ +LDDEM ++I
Sbjct: 30 GVRLDIDSETGSVGIESVE---DPVQGLKGPDIVRAIGRGFAPEDALTLLDDEMMLLELI 86
Query: 138 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 197
I RN+ +++ L+G N T + + L+G ++++ G+TV A+G+ + ++ VR
Sbjct: 87 DIEAATRNETDLTRKKGRLIGENGRTRELMAELSGAFVVIYGSTVGAIGTPEEIEVVRNA 146
Query: 198 VEDCMQNKMH 207
VE + H
Sbjct: 147 VEMILDGAPH 156
>gi|304315141|ref|YP_003850288.1| RNA-binding protein [Methanothermobacter marburgensis str. Marburg]
gi|302588600|gb|ADL58975.1| predicted RNA-binding protein [Methanothermobacter marburgensis
str. Marburg]
Length = 188
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G++T+ + DP KAR+++R + R A+++LDD++ DIIKI +
Sbjct: 36 LEIDSETGAVTLIPHDELDDPLSPWKARNIVRAIGRGFNPEVALRLLDDDVALDIIKITD 95
Query: 142 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED 200
V ++K+ +++ ++G T + + +TG I V G TVA +G F+ L R VE
Sbjct: 96 YVGKSKKAIARQKGRVIGRGGITRRIIHDMTGVDISVYGKTVALIGEFEKLSVAREAVEM 155
Query: 201 CMQNKMH 207
+ H
Sbjct: 156 ILNGARH 162
>gi|150400216|ref|YP_001323983.1| putative RNA-processing protein [Methanococcus vannielii SB]
gi|150012919|gb|ABR55371.1| KH type 1 domain protein [Methanococcus vannielii SB]
Length = 184
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
+ GV E++ EG +T+ +T + +D + KARD+++ + R +A+K+L DE +
Sbjct: 32 DLGVELEID-SEGEVTIYSTEEQKDALALWKARDIVKAVGRGFSPEKALKLLSDEHSFET 90
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
I I + + + + ++G + + + +E LTG ++ V G TV+ +G + ++ +
Sbjct: 91 IDITEYASSDKALQRLKGRIIGSSGKSRRYIEELTGTHVSVYGKTVSILGEIEPVQIAKD 150
Query: 197 IVEDCMQNKMHP 208
+E ++ H
Sbjct: 151 AIEMLLRGTSHS 162
>gi|433637168|ref|YP_007282928.1| universal archaeal KH domain protein [Halovivax ruber XH-70]
gi|448376349|ref|ZP_21559558.1| RNA-processing protein [Halovivax asiaticus JCM 14624]
gi|433288972|gb|AGB14795.1| universal archaeal KH domain protein [Halovivax ruber XH-70]
gi|445657274|gb|ELZ10103.1| RNA-processing protein [Halovivax asiaticus JCM 14624]
Length = 189
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIK 138
V +++ GS+ V T DP + +K D++R + R A+ +LDDE M DI+
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPDIVRAIGRGFAPEDALALLDDELMMFDIVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RN +++ L+G N T + +E L+G +++ G+T+A +G+ + + VR
Sbjct: 88 IDTASRNANDMKRQKGRLIGENGRTRELMEELSGASVVIYGSTLAIIGTPEQVDVVRTAA 147
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|257076599|ref|ZP_05570960.1| putative RNA-processing protein [Ferroplasma acidarmanus fer1]
Length = 185
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 92 TVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKERFV 150
+ T + DP + A ++++ ++R +A+ + DD +Q +I I V ++ +R
Sbjct: 43 AIVTVYQKNDPLKALMALNVVQAIARGFNPEKAMLLFDDSVQLIVISIKEFVNKDAKRIK 102
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PV 209
+ R L+G T + +E LTG YI + GNTV+ +G F ++ R V +Q + H V
Sbjct: 103 EIRGRLIGKEGHTREIIEELTGTYISISGNTVSILGDFISIQYAREAVNMILQGRKHKTV 162
Query: 210 Y 210
Y
Sbjct: 163 Y 163
>gi|448406892|ref|ZP_21573324.1| RNA-processing protein [Halosimplex carlsbadense 2-9-1]
gi|445676698|gb|ELZ29215.1| RNA-processing protein [Halosimplex carlsbadense 2-9-1]
Length = 182
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHL 156
+T DP +K D+++ + R +A+++LDDEM DII I RN+ + + L
Sbjct: 46 QTGDPLTALKGPDIVKAIGRGFAPEEAMRLLDDEMMMFDIIDIDAAARNRNDLQRHKGRL 105
Query: 157 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 210
+G + T + +E L+G +++ G+T+ +G + + VR E ++ H VY
Sbjct: 106 IGEDGRTRELMEELSGASVVIYGSTLGIIGGPEQVDTVREAAEMIIEGAPHGTVY 160
>gi|150403542|ref|YP_001330836.1| putative RNA-processing protein [Methanococcus maripaludis C7]
gi|159904678|ref|YP_001548340.1| putative RNA-processing protein [Methanococcus maripaludis C6]
gi|150034572|gb|ABR66685.1| KH type 1 domain protein [Methanococcus maripaludis C7]
gi|159886171|gb|ABX01108.1| KH type 1 domain protein [Methanococcus maripaludis C6]
Length = 184
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
E GV E++ EG +++ +T DP + KARD+++ + R +A+K++ DE ++
Sbjct: 32 ELGVELEID-SEGEVSIYSTEDQEDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEV 90
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
I I + + + + ++G + + +E LT +I V G TV+ +G + K +
Sbjct: 91 IDISEYGNSDKALQRLKGRIIGSGGKSRRYIEELTSTHISVYGKTVSIIGEIETAKIAKD 150
Query: 197 IVEDCMQNKMHP 208
+E ++ H
Sbjct: 151 AIEMLLRGTSHS 162
>gi|408381805|ref|ZP_11179353.1| RNA-processing protein [Methanobacterium formicicum DSM 3637]
gi|407815736|gb|EKF86306.1| RNA-processing protein [Methanobacterium formicicum DSM 3637]
Length = 191
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ GS+ +S +DP + KAR +++ + R A+K++DD++ +II + +
Sbjct: 36 IEVDSEAGSIAISPQEDAKDPLAVWKARYMVKAIGRGFNPEIALKLIDDDVMLEIINLPD 95
Query: 142 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED 200
V ++K+ ++++ ++G + T + +TG Y+ + G TV+ +G + L+ + VE
Sbjct: 96 YVGKSKKAVLRQKGRIIGKDGKTRDIITEMTGTYVSIYGKTVSIIGEMEHLQIAKEAVEM 155
Query: 201 CMQNKMH 207
+ H
Sbjct: 156 ILDGARH 162
>gi|448337651|ref|ZP_21526726.1| RNA-processing protein [Natrinema pallidum DSM 3751]
gi|445625228|gb|ELY78594.1| RNA-processing protein [Natrinema pallidum DSM 3751]
Length = 185
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ A+G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGAIGAPQEVDAVRTAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|261402309|ref|YP_003246533.1| putative RNA-processing protein [Methanocaldococcus vulcanius M7]
gi|261369302|gb|ACX72051.1| KH domain protein [Methanocaldococcus vulcanius M7]
Length = 216
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 72 KGALK-----EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
KG++K E GV E++ +G++T+ T K +D + KA+D++R + R A++
Sbjct: 29 KGSVKKAIEEELGVKLEID-EDGTVTIYGTDKQKDQLAVWKAKDIVRAIGRGFNPEIALR 87
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
++ D+ +II I + ++ + + ++G + + +E LTG + V G TVA +G
Sbjct: 88 LVSDDYVLEIIDIEDYASSENSLRRLKGRVIGKEGKSRRYIEGLTGANVSVYGKTVAIVG 147
Query: 187 SFKGLKQVRRIVEDCMQNKMHP 208
+ ++ + VE ++ H
Sbjct: 148 EHEPVQVAKEAVEMLLRGASHA 169
>gi|410720327|ref|ZP_11359683.1| KH domain protein [Methanobacterium sp. Maddingley MBC34]
gi|410601109|gb|EKQ55629.1| KH domain protein [Methanobacterium sp. Maddingley MBC34]
Length = 191
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Query: 81 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIG 140
S +++ GS+ +S DP + KAR +++ + R A+K++DD++ +II +
Sbjct: 35 SIDVDSEAGSIAISPQEDAEDPLAVWKARYMVKAIGRGFNPEIALKLIDDDVMLEIINLP 94
Query: 141 NLV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
+ V ++K+ ++++ ++G + T + +TG Y+ + G TV+ +G + L+ + VE
Sbjct: 95 DYVGKSKKAVLRQKGRIIGKDGKTRDIITEMTGTYVSIYGKTVSIIGEMEHLQIAKEAVE 154
Query: 200 DCMQNKMH 207
+ H
Sbjct: 155 MILDGARH 162
>gi|354609668|ref|ZP_09027624.1| KH domain protein [Halobacterium sp. DL1]
gi|353194488|gb|EHB59990.1| KH domain protein [Halobacterium sp. DL1]
Length = 183
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ +GS+ + + DP +KA +++R + R +A+ +LDDEM+ D I
Sbjct: 31 VELDVDSQDGSVAIE---RVGDPVRGMKAPEIVRAIGRGFKPDEALSLLDDEMRMFDTID 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IG RN +++ L+G N T + +E LTG +++ G+T +G
Sbjct: 88 IGRAARNDNDLRRKKGRLIGENGRTRELMEELTGANVVIYGSTFGVIG 135
>gi|448312672|ref|ZP_21502412.1| RNA-processing protein [Natronolimnobius innermongolicus JCM 12255]
gi|445600868|gb|ELY54868.1| RNA-processing protein [Natronolimnobius innermongolicus JCM 12255]
Length = 185
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP +KA D++R + R A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVSGLKAPDIVRAIGRGFAPDAALRLLEDEMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RN +++ L+G + T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNTNDMKRKKGRLIGEDGRTRELMEELTGADVVIYGSTLGVIGAPQEVDAVRTAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|134046036|ref|YP_001097522.1| putative RNA-processing protein [Methanococcus maripaludis C5]
gi|132663661|gb|ABO35307.1| KH, type 1, domain protein [Methanococcus maripaludis C5]
Length = 184
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
E GV E++ EG + + +T DP + KARD+++ + R +A+K++ DE ++
Sbjct: 32 ELGVELEID-SEGEVNIYSTEGQEDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEV 90
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
I I + + + + ++G + + + +E LT +I V G TV+ +G + K +
Sbjct: 91 IDISEYGNSDKALQRLKGRIIGSSGKSRRYIEELTSTHISVYGKTVSIIGEIETAKIAKD 150
Query: 197 IVEDCMQNKMHP 208
+E ++ H
Sbjct: 151 AIEMLLRGTSHS 162
>gi|448457874|ref|ZP_21595879.1| RNA-processing protein [Halorubrum lipolyticum DSM 21995]
gi|445810175|gb|EMA60206.1| RNA-processing protein [Halorubrum lipolyticum DSM 21995]
Length = 180
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP ++ A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAVMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRQKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + LE L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|257386765|ref|YP_003176538.1| KH type 1 domain-containing protein [Halomicrobium mukohataei DSM
12286]
gi|257169072|gb|ACV46831.1| KH type 1 domain protein [Halomicrobium mukohataei DSM 12286]
Length = 182
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V + DP +K D+++ + R A+ +LDDEM D++
Sbjct: 31 VRLDIDSESGSVGVESVG---DPITGLKGPDIVKAIGRGFNPEDALALLDDEMMMFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RN+ F +++ L+G T + +E LTG +++ G+T+ +G + + VR
Sbjct: 88 IDAASRNQNDFTRQKGRLIGEGGRTRELMEELTGASVVIYGSTLGIIGGPEQVDAVREAA 147
Query: 199 EDCMQNKMH-PVY 210
E ++ H VY
Sbjct: 148 EMLLEGAPHGSVY 160
>gi|432108524|gb|ELK33238.1| Calcyphosin-2 [Myotis davidii]
Length = 666
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 34/39 (87%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
V+ L+L+EGSMTV TT+KT DPYII++ RDLI+LL+R+
Sbjct: 30 VNATLDLIEGSMTVCTTKKTFDPYIIIRIRDLIKLLART 68
>gi|18977952|ref|NP_579309.1| RNA-processing protein [Pyrococcus furiosus DSM 3638]
gi|397652073|ref|YP_006492654.1| RNA-processing protein [Pyrococcus furiosus COM1]
gi|18893724|gb|AAL81704.1| hypothetical protein PF1580 [Pyrococcus furiosus DSM 3638]
gi|393189664|gb|AFN04362.1| RNA-processing protein [Pyrococcus furiosus COM1]
Length = 221
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + +++T++T DP + KARD++ + R +A ++L++ +II + +
Sbjct: 69 IEVDSETGEVWITSTKETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTD 128
Query: 142 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
++ E+ + R ++G T + +E ++G I V G TVA +G+ ++ R +E
Sbjct: 129 IIIGNEKNALPRVRGRIIGRKGRTREIIEEMSGASISVYGKTVAIIGNPIQIEIARTAIE 188
Query: 200 DCMQNKMHPVYHIKILMVKKELEKDPALANEN 231
+ H + + KK+LE + ++ EN
Sbjct: 189 KLARGSPHGTVYRYLERRKKDLELEGSMYYEN 220
>gi|448401055|ref|ZP_21571461.1| RNA-processing protein [Haloterrigena limicola JCM 13563]
gi|445666868|gb|ELZ19524.1| RNA-processing protein [Haloterrigena limicola JCM 13563]
Length = 185
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K D++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPDIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIGAPQEVDAVRSAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|332157797|ref|YP_004423076.1| putative RNA-processing protein [Pyrococcus sp. NA2]
gi|331033260|gb|AEC51072.1| putative RNA-processing protein [Pyrococcus sp. NA2]
Length = 220
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
G + +++T++T+DP + KARD++ + R +A ++L++ +II + +++ E+
Sbjct: 75 GEVWITSTKETKDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 134
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
+ R ++G T + +E ++G + V G TVA +G+ ++ + +E +
Sbjct: 135 NALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSP 194
Query: 207 HPVYHIKILMVKKELEKDPALANEN 231
H + + KK+LE + ++ EN
Sbjct: 195 HGSVYRYLERRKKDLELEGSMYYEN 219
>gi|45358168|ref|NP_987725.1| RNA-processing protein [Methanococcus maripaludis S2]
gi|340623859|ref|YP_004742312.1| putative RNA-processing protein [Methanococcus maripaludis X1]
gi|44920925|emb|CAF30161.1| Conserved Hypothetical protein [Methanococcus maripaludis S2]
gi|339904127|gb|AEK19569.1| putative RNA-processing protein [Methanococcus maripaludis X1]
Length = 184
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 77 EYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDI 136
+ GV E++ EG + + +T + +DP + KARD+++ + R +A+K++ DE ++
Sbjct: 32 DLGVELEID-SEGEVNIYSTDEQKDPLALWKARDIVKAIGRGFNPEKALKLVSDEYAFEV 90
Query: 137 IKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
I I + + + + ++G + + + +E LT +I V G TV+ +G + K +
Sbjct: 91 IDISEYGNSDKAIQRLKGRIIGSSGKSRRYVEELTSTHISVYGKTVSIIGEIETAKIAKD 150
Query: 197 IVEDCMQNKMHP 208
+E ++ H
Sbjct: 151 AIEMLLRGTSHS 162
>gi|448475910|ref|ZP_21603265.1| RNA-processing protein [Halorubrum aidingense JCM 13560]
gi|445816128|gb|EMA66037.1| RNA-processing protein [Halorubrum aidingense JCM 13560]
Length = 180
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTFDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + LE L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|448622363|ref|ZP_21669057.1| RNA-processing protein [Haloferax denitrificans ATCC 35960]
gi|445754445|gb|EMA05850.1| RNA-processing protein [Haloferax denitrificans ATCC 35960]
Length = 180
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGAEVVIYGSTLGIIGQPEEVEAVRRAVEMILDGAPH 156
Query: 208 -PVY 210
VY
Sbjct: 157 GAVY 160
>gi|448441692|ref|ZP_21589299.1| RNA-processing protein [Halorubrum saccharovorum DSM 1137]
gi|448462610|ref|ZP_21597809.1| RNA-processing protein [Halorubrum kocurii JCM 14978]
gi|445688728|gb|ELZ40979.1| RNA-processing protein [Halorubrum saccharovorum DSM 1137]
gi|445818174|gb|EMA68037.1| RNA-processing protein [Halorubrum kocurii JCM 14978]
Length = 180
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAALVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + LE L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|448494891|ref|ZP_21609706.1| RNA-processing protein [Halorubrum californiensis DSM 19288]
gi|445689114|gb|ELZ41360.1| RNA-processing protein [Halorubrum californiensis DSM 19288]
Length = 180
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + LE L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELLEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|448606648|ref|ZP_21659074.1| RNA-processing protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445738856|gb|ELZ90368.1| RNA-processing protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 180
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGAEVVIYGSTLGIIGKPEEVEAVRRAVEMILDGAPH 156
Query: 208 -PVY 210
VY
Sbjct: 157 GAVY 160
>gi|351700923|gb|EHB03842.1| KRR1 small subunit processome component-like protein
[Heterocephalus glaber]
Length = 179
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
++ L L+EGSMTV TT+KT DPYII++ARDLI+LL S
Sbjct: 15 LNATLGLIEGSMTVCTTKKTSDPYIIIRARDLIKLLPES 53
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 267 SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEA 326
S+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFI P+E EA
Sbjct: 53 SQIDKELASGEYFLKANQKKRQKMEAIKAKQAEALSKRQEERNKAFITPKEKPVAKPKEA 112
Query: 327 EDKTN-DVAAM 336
+T DVA +
Sbjct: 113 STETKIDVATI 123
>gi|432329120|ref|YP_007247264.1| universal archaeal KH domain protein [Aciduliprofundum sp.
MAR08-339]
gi|432135829|gb|AGB05098.1| universal archaeal KH domain protein [Aciduliprofundum sp.
MAR08-339]
Length = 182
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
GV E++ EG + + + + DP + +K RD + + R +A +I ++++ ++I
Sbjct: 30 GVKMEIDSREGDVVIDES--SGDPLMALKVRDFVMAVGRGFSPERAWRIFNEDVYFEVID 87
Query: 139 IGNLVRNKE-RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 197
I +E R R ++G N T + +E L+G + + G +VA +GS+ ++ +
Sbjct: 88 IKEFAGKRESRIRVLRGRIIGKNGKTRRIIEELSGASLSIYGYSVAIIGSYTQIETAKHA 147
Query: 198 VEDCMQNKMHP-VYH 211
VE ++ H +YH
Sbjct: 148 VEMLLRGSKHATIYH 162
>gi|448354706|ref|ZP_21543461.1| RNA-processing protein [Natrialba hulunbeirensis JCM 10989]
gi|445637037|gb|ELY90193.1| RNA-processing protein [Natrialba hulunbeirensis JCM 10989]
Length = 194
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ + T DP + +K +++R + R P A+++LDD+M D++
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVLGLKGPEIVRAIGRGFPPEDALRLLDDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ ++ R
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGLIGTPPEVEAARTAA 147
Query: 199 EDCMQNKMH 207
E + H
Sbjct: 148 EMLLDGAPH 156
>gi|448732133|ref|ZP_21714415.1| RNA-processing protein [Halococcus salifodinae DSM 8989]
gi|445805045|gb|EMA55272.1| RNA-processing protein [Halococcus salifodinae DSM 8989]
Length = 182
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + +K +++ + R A+ +LDDEM D++ + RNK +++ L+G
Sbjct: 49 DPVLGLKGPEIVEAIGRGFAPEDALVLLDDEMMMFDLVDVDAATRNKNDLERKKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 210
N T + + LTG +++ G TV A+G+ + ++ VR VE + H VY
Sbjct: 109 NGRTRELMVELTGAEVVIYGTTVGAIGTPQQVEAVRSAVEMLLDGAPHGAVY 160
>gi|15679024|ref|NP_276141.1| RNA-processing protein [Methanothermobacter thermautotrophicus str.
Delta H]
gi|2622107|gb|AAB85502.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 191
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G++T+ + DP KAR ++R + R A+++LDD++ ++IKI +
Sbjct: 39 LEIDSETGAVTLIPQDELEDPLSPWKARHIVRAIGRGFNPEVALRLLDDDVALEVIKITD 98
Query: 142 LV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED 200
V ++K+ +++ ++G T + + +TG I V G TV+ +G F+ L R +E
Sbjct: 99 YVGKSKKAIARQKGRVIGREGITRRIIHDMTGVDISVYGKTVSLIGEFEKLAVAREAIEM 158
Query: 201 CMQNKMH-PVY 210
+ H VY
Sbjct: 159 ILNGARHKSVY 169
>gi|429191701|ref|YP_007177379.1| KH domain-containing protein [Natronobacterium gregoryi SP2]
gi|448325155|ref|ZP_21514553.1| RNA-processing protein [Natronobacterium gregoryi SP2]
gi|429135919|gb|AFZ72930.1| KH domain protein [Natronobacterium gregoryi SP2]
gi|445616294|gb|ELY69922.1| RNA-processing protein [Natronobacterium gregoryi SP2]
Length = 187
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ + T DP +K +++R + R A+ +LDDEM D++
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVRGLKGPEIVRAIGRGFAPEDALTLLDDEMMMFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G N T + +E L+G +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDLQRQKGRLIGENGRTRELMEELSGASVVIYGSTLGIIGTPEEVDAVRTAA 147
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 148 EMILDGAPHGTVY 160
>gi|14591347|ref|NP_143425.1| RNA-processing protein [Pyrococcus horikoshii OT3]
gi|159794750|pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus
Horikoshii Ot3
gi|294979443|pdb|3AEV|B Chain B, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
gi|3257995|dbj|BAA30678.1| 219aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 219
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
G + +++T++T DP + KARD++ + R +A ++L++ +II + +++ E+
Sbjct: 74 GEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 133
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
+ R ++G T + +E ++G + V G TVA +G+ ++ + +E +
Sbjct: 134 NALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSP 193
Query: 207 HPVYHIKILMVKKELEKDPALANEN 231
H + + KK+LE + A+ EN
Sbjct: 194 HGSVYRYLERRKKDLELEGAMYYEN 218
>gi|254167589|ref|ZP_04874440.1| KH domain protein [Aciduliprofundum boonei T469]
gi|197623398|gb|EDY35962.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 181
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
GV ++N +G + + + + DP + +K RD + + R +A +I ++++ ++I
Sbjct: 29 GVKMDINSNDGDVVIDES--SGDPLMALKVRDFVMAVGRGFSPERAWRIFNEDVYFEVID 86
Query: 139 IGNLVRNKERFVK-RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 197
I +E ++ R ++G N T + +E ++G I V G TVA +G + ++ ++
Sbjct: 87 IKEFTGKRENRIRVLRGRIIGKNGKTRRIIEEMSGASISVYGYTVAIIGDYTQMEIAKKA 146
Query: 198 VEDCMQNKMHP-VYH 211
VE ++ H +YH
Sbjct: 147 VEMLLRGSKHATIYH 161
>gi|389852869|ref|YP_006355103.1| hypothetical protein Py04_1456 [Pyrococcus sp. ST04]
gi|388250175|gb|AFK23028.1| hypothetical protein Py04_1456 [Pyrococcus sp. ST04]
Length = 221
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + +++TR+T DP + KARD++ + R +A ++L++ +I+ + +
Sbjct: 69 IEVDSETGEVWITSTRETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIVNLTD 128
Query: 142 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
++ E+ + R ++G T + +E ++G + V G TVA +G+ ++ + +E
Sbjct: 129 IIIGDEKKALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIE 188
Query: 200 DCMQNKMHPVYHIKILMVKKELEKDPALANEN 231
+ H + + KK+LE + ++ EN
Sbjct: 189 KLARGSPHGTVYRYLERRKKDLELEGSMYYEN 220
>gi|337283842|ref|YP_004623316.1| putative RNA-processing protein [Pyrococcus yayanosii CH1]
gi|334899776|gb|AEH24044.1| putative RNA-processing protein [Pyrococcus yayanosii CH1]
Length = 220
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + +++T++T DP + KARD++ + R +A ++L++ +II + +
Sbjct: 68 IEVDSETGEVWITSTKETNDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTD 127
Query: 142 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
++ E+ + R ++G T + +E ++G + V G TVA +G+ ++ + +E
Sbjct: 128 MIIGNEKNALPRVRGRIIGRKGRTREIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIE 187
Query: 200 DCMQNKMHPVYHIKILMVKKELEKDPALANEN 231
+ H + + KK+LE + A+ EN
Sbjct: 188 KLARGAPHGTVYRYLERRKKDLELEGAMYYEN 219
>gi|397771874|ref|YP_006539420.1| KH domain protein [Natrinema sp. J7-2]
gi|397680967|gb|AFO55344.1| KH domain protein [Natrinema sp. J7-2]
Length = 182
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 28 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 84
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 85 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIGAPQEVDAVRTAA 144
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 145 EMLLDGAPHGAVY 157
>gi|289596955|ref|YP_003483651.1| KH domain protein [Aciduliprofundum boonei T469]
gi|289534742|gb|ADD09089.1| KH domain protein [Aciduliprofundum boonei T469]
Length = 182
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
GV ++N +G + + + + DP + +K RD + + R +A +I ++++ ++I
Sbjct: 30 GVKMDINSNDGDVVIDES--SGDPLMALKVRDFVMAVGRGFSPERAWRIFNEDVYFEVID 87
Query: 139 IGNLVRNKERFVK-RRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 197
I +E ++ R ++G N T + +E ++G I V G TVA +G + ++ ++
Sbjct: 88 IKEFTGKRENRIRVLRGRIIGKNGKTRRIIEEMSGASISVYGYTVAIIGDYTQMEIAKKA 147
Query: 198 VEDCMQNKMHP-VYH 211
VE ++ H +YH
Sbjct: 148 VEMLLRGSKHATIYH 162
>gi|448560526|ref|ZP_21633974.1| RNA-processing protein [Haloferax prahovense DSM 18310]
gi|448582774|ref|ZP_21646278.1| RNA-processing protein [Haloferax gibbonsii ATCC 33959]
gi|445722176|gb|ELZ73839.1| RNA-processing protein [Haloferax prahovense DSM 18310]
gi|445732422|gb|ELZ84005.1| RNA-processing protein [Haloferax gibbonsii ATCC 33959]
Length = 180
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIEIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIGQPEEVEVVRRAVEMILDGAPH 156
Query: 208 -PVY 210
VY
Sbjct: 157 GAVY 160
>gi|448342159|ref|ZP_21531111.1| RNA-processing protein [Natrinema gari JCM 14663]
gi|448346687|ref|ZP_21535569.1| RNA-processing protein [Natrinema altunense JCM 12890]
gi|445626150|gb|ELY79499.1| RNA-processing protein [Natrinema gari JCM 14663]
gi|445631949|gb|ELY85172.1| RNA-processing protein [Natrinema altunense JCM 12890]
Length = 185
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIGAPQEVDAVRTAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|433589530|ref|YP_007279026.1| KH domain protein [Natrinema pellirubrum DSM 15624]
gi|448335674|ref|ZP_21524813.1| RNA-processing protein [Natrinema pellirubrum DSM 15624]
gi|433304310|gb|AGB30122.1| KH domain protein [Natrinema pellirubrum DSM 15624]
gi|445616197|gb|ELY69826.1| RNA-processing protein [Natrinema pellirubrum DSM 15624]
Length = 185
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGVIGAPQEVDAVRSAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|336253009|ref|YP_004596116.1| KH domain-containing protein [Halopiger xanaduensis SH-6]
gi|335336998|gb|AEH36237.1| KH domain protein [Halopiger xanaduensis SH-6]
Length = 185
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDEMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEEGRTRELMEELTGADVVIYGSTLGIIGTPEQVDAVRSAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|336122118|ref|YP_004576893.1| KH domain-containing protein [Methanothermococcus okinawensis IH1]
gi|334856639|gb|AEH07115.1| KH domain protein [Methanothermococcus okinawensis IH1]
Length = 184
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
KE GV ++ +G +T+ +T + +DP KA+D+IR + R +A+K++ D+ +
Sbjct: 31 KELGVEVVID-EDGEITIFSTEEQKDPLATWKAKDIIRAIGRGFNPEKALKLISDDYILE 89
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
II I + + + + ++G + + +E LT + V G T+A +G ++ ++ +
Sbjct: 90 IIDITDYANSDNAIRRLKGRVIGSGGKSRRYIEDLTDTDVSVYGKTIAILGEYEPVQIAK 149
Query: 196 RIVEDCMQNKMHP 208
V ++ H
Sbjct: 150 EAVSMILRGSSHA 162
>gi|433430164|ref|ZP_20407477.1| RNA-processing protein [Haloferax sp. BAB2207]
gi|448543955|ref|ZP_21625416.1| RNA-processing protein [Haloferax sp. ATCC BAA-646]
gi|448551115|ref|ZP_21629257.1| RNA-processing protein [Haloferax sp. ATCC BAA-645]
gi|448558510|ref|ZP_21633067.1| RNA-processing protein [Haloferax sp. ATCC BAA-644]
gi|448573609|ref|ZP_21641092.1| RNA-processing protein [Haloferax lucentense DSM 14919]
gi|448597756|ref|ZP_21654681.1| RNA-processing protein [Haloferax alexandrinus JCM 10717]
gi|432194607|gb|ELK51214.1| RNA-processing protein [Haloferax sp. BAB2207]
gi|445706097|gb|ELZ57984.1| RNA-processing protein [Haloferax sp. ATCC BAA-646]
gi|445710671|gb|ELZ62469.1| RNA-processing protein [Haloferax sp. ATCC BAA-645]
gi|445712262|gb|ELZ64044.1| RNA-processing protein [Haloferax sp. ATCC BAA-644]
gi|445718515|gb|ELZ70205.1| RNA-processing protein [Haloferax lucentense DSM 14919]
gi|445739217|gb|ELZ90726.1| RNA-processing protein [Haloferax alexandrinus JCM 10717]
Length = 180
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIGQPEEVEVVRRAVEMILDGAPH 156
Query: 208 -PVY 210
VY
Sbjct: 157 GAVY 160
>gi|345006033|ref|YP_004808886.1| KH domain-containing protein [halophilic archaeon DL31]
gi|344321659|gb|AEN06513.1| KH domain protein [halophilic archaeon DL31]
Length = 180
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ-CDII 137
GV +++ +GS+ + T DP + A D+++ + R A+K+L+ EM+ +I
Sbjct: 30 GVRLDIDSEDGSVGIETVG---DPIAAMDAPDIVKAIGRGFKPESALKLLESEMRRFTLI 86
Query: 138 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 197
+ RNK +++ L+G + T + +E +G +++ G+TV +G + ++ VRR
Sbjct: 87 DLNEQTRNKNDLQRQKGRLIGEDGRTRELMEQFSGAEVVIYGSTVGIIGEPEEVETVRRA 146
Query: 198 VEDCMQNKMH-PVY 210
V + H PVY
Sbjct: 147 VGMILDGAPHGPVY 160
>gi|448451612|ref|ZP_21592912.1| RNA-processing protein [Halorubrum litoreum JCM 13561]
gi|445810468|gb|EMA60493.1| RNA-processing protein [Halorubrum litoreum JCM 13561]
Length = 180
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELIEDLSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|383620249|ref|ZP_09946655.1| putative RNA-processing protein [Halobiforma lacisalsi AJ5]
gi|448695968|ref|ZP_21697622.1| RNA-processing protein [Halobiforma lacisalsi AJ5]
gi|445784079|gb|EMA34899.1| RNA-processing protein [Halobiforma lacisalsi AJ5]
Length = 185
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R +A+++L++EM D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEEALRLLENEMMMFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK + + L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDLQRHKGRLIGEGGRTRELMEELTGASVVIYGSTLGIIGAPEEVDAVRTAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|448381536|ref|ZP_21561656.1| RNA-processing protein [Haloterrigena thermotolerans DSM 11522]
gi|445663023|gb|ELZ15783.1| RNA-processing protein [Haloterrigena thermotolerans DSM 11522]
Length = 185
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAASRNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGVIGAPQEVDAVRTAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|448483379|ref|ZP_21605753.1| RNA-processing protein [Halorubrum arcis JCM 13916]
gi|448514185|ref|ZP_21616937.1| RNA-processing protein [Halorubrum distributum JCM 9100]
gi|448526135|ref|ZP_21619753.1| RNA-processing protein [Halorubrum distributum JCM 10118]
gi|445692853|gb|ELZ45022.1| RNA-processing protein [Halorubrum distributum JCM 9100]
gi|445699335|gb|ELZ51366.1| RNA-processing protein [Halorubrum distributum JCM 10118]
gi|445820751|gb|EMA70555.1| RNA-processing protein [Halorubrum arcis JCM 13916]
Length = 180
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|448731493|ref|ZP_21713792.1| RNA-processing protein [Halococcus saccharolyticus DSM 5350]
gi|445791821|gb|EMA42440.1| RNA-processing protein [Halococcus saccharolyticus DSM 5350]
Length = 182
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ-CDIIKIGNLVRNKERFVKRRQHLVGP 159
DP + +K +++ + R A+ +LDDEM +++ + RNK +++ L+G
Sbjct: 49 DPMLGLKGPEIVEAIGRGFAPEDALALLDDEMMMLELVDVDAATRNKNDLERKKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 210
N T + + LTG +++ G TV A+G+ + ++ VR VE + H VY
Sbjct: 109 NGRTRELMAELTGAEVVIYGTTVGAIGAPQQVEVVRSAVEMLLDGAPHGAVY 160
>gi|448536208|ref|ZP_21622453.1| RNA-processing protein [Halorubrum hochstenium ATCC 700873]
gi|445702651|gb|ELZ54595.1| RNA-processing protein [Halorubrum hochstenium ATCC 700873]
Length = 180
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELMEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|448433701|ref|ZP_21586028.1| RNA-processing protein [Halorubrum tebenquichense DSM 14210]
gi|445686293|gb|ELZ38629.1| RNA-processing protein [Halorubrum tebenquichense DSM 14210]
Length = 180
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELMEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|448307133|ref|ZP_21497034.1| RNA-processing protein [Natronorubrum bangense JCM 10635]
gi|445596680|gb|ELY50765.1| RNA-processing protein [Natronorubrum bangense JCM 10635]
Length = 185
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ + + DP +KA D++R + R A+++L+DEM D++
Sbjct: 31 VRLDIDSENGSVAIDSVG---DPVRGLKAPDIVRAIGRGFAPEAALRLLEDEMMMFDLVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGTIGTPQQVDIVRTAA 147
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 148 EMILDGAPHGTVY 160
>gi|289581759|ref|YP_003480225.1| KH domain-containing protein [Natrialba magadii ATCC 43099]
gi|448282835|ref|ZP_21474117.1| RNA-processing protein [Natrialba magadii ATCC 43099]
gi|289531312|gb|ADD05663.1| KH domain protein [Natrialba magadii ATCC 43099]
gi|445575450|gb|ELY29925.1| RNA-processing protein [Natrialba magadii ATCC 43099]
Length = 192
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ GS+ + T DP + +K +++R + R P A+++L DD M DI+
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVLGLKGPEIVRAIGRGFPPEDALRLLEDDMMMFDIVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ ++ R
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGLIGTPPEVEAARTAA 147
Query: 199 EDCMQNKMH 207
E + H
Sbjct: 148 EMLLDGAPH 156
>gi|292654312|ref|YP_003534209.1| RNA-binding Pno1-like protein [Haloferax volcanii DS2]
gi|448293856|ref|ZP_21483959.1| RNA-processing protein [Haloferax volcanii DS2]
gi|291371752|gb|ADE03979.1| RNA-binding Pno1 homolog [Haloferax volcanii DS2]
gi|445569777|gb|ELY24348.1| RNA-processing protein [Haloferax volcanii DS2]
Length = 180
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIDIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ L+G N T + +E LTG +++ G T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVIYGTTLGIIGQPEEVEVVRRAVEMILDGAPH 156
Query: 208 -PVY 210
VY
Sbjct: 157 GAVY 160
>gi|448427291|ref|ZP_21583644.1| RNA-processing protein [Halorubrum terrestre JCM 10247]
gi|445678742|gb|ELZ31227.1| RNA-processing protein [Halorubrum terrestre JCM 10247]
Length = 180
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|222481065|ref|YP_002567302.1| RNA-processing protein [Halorubrum lacusprofundi ATCC 49239]
gi|222453967|gb|ACM58232.1| KH type 1 domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 180
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D+I + RN +++ ++G
Sbjct: 49 DPVAALVAPDIIKAIGRGFKPETALSILDHDLRTLDLIDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|409731003|ref|ZP_11272554.1| RNA-processing protein [Halococcus hamelinensis 100A6]
gi|448722025|ref|ZP_21704566.1| RNA-processing protein [Halococcus hamelinensis 100A6]
gi|445790428|gb|EMA41090.1| RNA-processing protein [Halococcus hamelinensis 100A6]
Length = 182
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKE 147
GS+ V T DP +K D+++ + R +A+ +LDD+ M ++ + + RNK
Sbjct: 40 GSVGVETVG---DPVQGLKGPDIVKAIGRGFAPDEALTLLDDDVMTLQVVDVESATRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ L+G N T + +E L+G +++ G TV +G + ++ VR VE + H
Sbjct: 97 DLTRQKGRLIGENGRTRQLMEELSGASVVIYGTTVGIIGLPQAVEVVRNAVEMILDGAPH 156
>gi|313124877|ref|YP_004035141.1| universal archaeal kh domain-containing protein [Halogeometricum
borinquense DSM 11551]
gi|448287286|ref|ZP_21478499.1| RNA-processing protein [Halogeometricum borinquense DSM 11551]
gi|312291242|gb|ADQ65702.1| universal archaeal KH domain protein [Halogeometricum borinquense
DSM 11551]
gi|445572494|gb|ELY27032.1| RNA-processing protein [Halogeometricum borinquense DSM 11551]
Length = 180
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+IR + R A+ +LDDEM+ ++I + RNK +++ L+G
Sbjct: 49 DPVTGMVAPDVIRAVGRGFTPEAALSLLDDEMRAFELIDLQQHTRNKNDLQRQKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 210
N T + +E LTG ++++G T+ +G + ++ VRR + H VY
Sbjct: 109 NGRTRELMEELTGAEVVIRGTTLGIIGQPEEVEAVRRATGMILDGAPHGAVY 160
>gi|448611239|ref|ZP_21661873.1| RNA-processing protein [Haloferax mucosum ATCC BAA-1512]
gi|445743671|gb|ELZ95152.1| RNA-processing protein [Haloferax mucosum ATCC BAA-1512]
Length = 180
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIEIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR V+ + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIGQPEEVEVVRRAVDMILDGAPH 156
Query: 208 -PVY 210
VY
Sbjct: 157 GAVY 160
>gi|110668939|ref|YP_658750.1| RNA-processing protein [Haloquadratum walsbyi DSM 16790]
gi|385804524|ref|YP_005840924.1| ribosomal RNA assembly protein [Haloquadratum walsbyi C23]
gi|109626686|emb|CAJ53153.1| KH domain protein [Haloquadratum walsbyi DSM 16790]
gi|339730016|emb|CCC41321.1| KH domain protein [Haloquadratum walsbyi C23]
Length = 180
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D++R + R A+ ILDDEM+ ++I + RNK +++ L+G
Sbjct: 49 DPVRGMLAPDIVRAIGRGFTPTAALSILDDEMRTFELIDLDAHTRNKNDLQRQKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
N T + +E LTG ++++G T+ +G + ++ VRR + H +
Sbjct: 109 NGRTRELMEELTGAEVVIRGTTLGVIGQPEEVEAVRRATGMLLDGAPHGTVY 160
>gi|389845633|ref|YP_006347872.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|448616749|ref|ZP_21665459.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|388242939|gb|AFK17885.1| putative RNA-processing protein [Haloferax mediterranei ATCC 33500]
gi|445751404|gb|EMA02841.1| RNA-processing protein [Haloferax mediterranei ATCC 33500]
Length = 180
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LDD+M ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMALLDDDMMMFELIEIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR V+ + H
Sbjct: 97 DMRRQKGRLIGENGRTRELMEELTGADVVIYGSTLGIIGQPEEVEVVRRAVDMILDGAPH 156
Query: 208 -PVY 210
VY
Sbjct: 157 GAVY 160
>gi|448503885|ref|ZP_21613514.1| RNA-processing protein [Halorubrum coriense DSM 10284]
gi|445692086|gb|ELZ44269.1| RNA-processing protein [Halorubrum coriense DSM 10284]
Length = 180
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D+I+ + R A+ ILD +++ D++ + RN +++ ++G
Sbjct: 49 DPVAAMVAPDVIKAIGRGFKPETALSILDHDLRTLDLVDLSEHTRNDNDLQRKKGRIIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + +E L+G ++V G+TV A+G + L+ VRR V + H + + +
Sbjct: 109 NGRTRELIEELSGANVVVYGSTVGAVGQPEELEVVRRAVGMLLDGAPHGAVYSYLERMSN 168
Query: 220 ELEKD 224
EL+ D
Sbjct: 169 ELDDD 173
>gi|448578897|ref|ZP_21644256.1| RNA-processing protein [Haloferax larsenii JCM 13917]
gi|448589289|ref|ZP_21649448.1| RNA-processing protein [Haloferax elongans ATCC BAA-1513]
gi|445724825|gb|ELZ76452.1| RNA-processing protein [Haloferax larsenii JCM 13917]
gi|445735717|gb|ELZ87265.1| RNA-processing protein [Haloferax elongans ATCC BAA-1513]
Length = 180
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKE 147
GS+ + + DP + + A D++R + R A+ +LD EM ++I+I RNK
Sbjct: 40 GSVAIDSVG---DPVLGMVAPDVVRAVGRGFAPEDAMLLLDQEMAMFELIEIDRHTRNKN 96
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ L+G N T + +E LTG +++ G+T+ +G + ++ VRR VE + H
Sbjct: 97 DMRRKKGRLIGENGRTRELMEELTGADVVIYGSTLGIIGQPEEVEAVRRAVEMILDGAPH 156
Query: 208 -PVY 210
VY
Sbjct: 157 GAVY 160
>gi|284166911|ref|YP_003405190.1| KH domain-containing protein [Haloterrigena turkmenica DSM 5511]
gi|284016566|gb|ADB62517.1| KH domain protein [Haloterrigena turkmenica DSM 5511]
Length = 185
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAVGRGFAPEAALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIGTPEQVDVVRSAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|448298866|ref|ZP_21488885.1| RNA-processing protein [Natronorubrum tibetense GA33]
gi|445589581|gb|ELY43810.1| RNA-processing protein [Natronorubrum tibetense GA33]
Length = 185
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIK 138
V +++ GS+ V T DP + +KA D++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVDTVG---DPVLGLKAPDIVRAIGRGFAPETALRLLEDDMIMFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RN +++ L+G T + +E L+G +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNTNDMKRKKGRLIGEGGRTRELMEELSGANVVIYGSTLGIIGAPQQVDVVRTAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|15791048|ref|NP_280872.1| RNA-processing protein [Halobacterium sp. NRC-1]
gi|169236798|ref|YP_001689998.1| RNA-processing protein [Halobacterium salinarum R1]
gi|10581643|gb|AAG20352.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727864|emb|CAP14652.1| KH domain protein [Halobacterium salinarum R1]
Length = 183
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ +G++ + +T DP ++A ++++ + R +A+ +LDD+M+ D I
Sbjct: 31 VDIDVDSQDGAVAIE---RTGDPVRGMQAPEIVQAIGRGFKPDEALTLLDDDMRMFDTID 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IG RN +++ L+G N T + +E LTG +++ G+T +G
Sbjct: 88 IGRAARNDNDLRRKKGRLIGENGRTRELMEELTGASVVIYGSTFGVIG 135
>gi|14520809|ref|NP_126284.1| RNA-processing protein [Pyrococcus abyssi GE5]
gi|5458025|emb|CAB49515.1| Predicted RNA-binding protein [Pyrococcus abyssi GE5]
gi|380741351|tpe|CCE69985.1| TPA: putative RNA-processing protein [Pyrococcus abyssi GE5]
Length = 221
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
G + +++T++T DP + KARD+++ + R +A ++L++ +II + +++ E+
Sbjct: 76 GEVWITSTKETDDPLAVWKARDIVQAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEK 135
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
+ R ++G T + +E ++G + V G TVA +G+ ++ + +E +
Sbjct: 136 NALPRIRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSP 195
Query: 207 HPVYHIKILMVKKELEKDPALANEN 231
H + + KK+LE + + EN
Sbjct: 196 HGSVYRYLERRKKDLELEGNMYYEN 220
>gi|448356505|ref|ZP_21545238.1| RNA-processing protein [Natrialba chahannaoensis JCM 10990]
gi|445653538|gb|ELZ06409.1| RNA-processing protein [Natrialba chahannaoensis JCM 10990]
Length = 185
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ + T DP + +K +++R + R P A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAIETVG---DPVLGLKGPEIVRAIGRGFPPEDALQLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ ++ R
Sbjct: 88 IDAASRNKNDMKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGLIGTPPEVEAARTAA 147
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 148 EMLLDGAPHGTVY 160
>gi|242399085|ref|YP_002994509.1| RNA-binding protein, containing KH domain [Thermococcus sibiricus
MM 739]
gi|242265478|gb|ACS90160.1| RNA-binding protein, containing KH domain [Thermococcus sibiricus
MM 739]
Length = 220
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
G + +++T +T DP + KARD++ + R +A ++L++ +++++ +++ ER
Sbjct: 75 GEVFITSTEETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEVLEVVELTDIIIGNER 134
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
+ R ++G T + +E ++G I V G TVA +G+ ++ + +E ++
Sbjct: 135 NALPRVRGRIIGRKGRTREIIEEMSGTEISVYGKTVAIIGNPLQVQVAKTAIEKLVKGSP 194
Query: 207 HPVYHIKILMVKKELEKDPAL 227
H + + KK+LE + +
Sbjct: 195 HGTVYKYLERRKKDLELEGGM 215
>gi|257052348|ref|YP_003130181.1| RNA-processing protein [Halorhabdus utahensis DSM 12940]
gi|256691111|gb|ACV11448.1| KH type 1 domain protein [Halorhabdus utahensis DSM 12940]
Length = 182
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNLVRNKERFVKRRQHLVGP 159
DP + +K D+++ + R A+++LD D M D+I I + RN + + L+G
Sbjct: 49 DPVLGLKGPDIVKAIGRGFSPEAALRLLDGDMMMFDVIDIDAVARNPNDLKRLKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
N T + +E LTG +++ G+T++ +G + + VR E ++ H
Sbjct: 109 NGRTRELMEDLTGADVVIYGSTLSIIGGPEQVDAVREAAEMILEGAPH 156
>gi|195575648|ref|XP_002077689.1| GD22935 [Drosophila simulans]
gi|194189698|gb|EDX03274.1| GD22935 [Drosophila simulans]
Length = 110
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 265 QP-SKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNS 323
QP SK+DK L SGEYFL++ +K++K+ QE+ EKQ E +R+ F+PP E S +S
Sbjct: 20 QPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESAASS 79
Query: 324 CEAEDKTNDVAAMAKSLKEK 343
+ ED ++ K+LK K
Sbjct: 80 RKKEDGSSSNKVDVKALKAK 99
>gi|448389236|ref|ZP_21565648.1| RNA-processing protein [Haloterrigena salina JCM 13891]
gi|445669140|gb|ELZ21755.1| RNA-processing protein [Haloterrigena salina JCM 13891]
Length = 185
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP +K +++R + R A+++L+D+M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVRGLKGPEIVRAVGRGFAPDAALRLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAAARNKNDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGIIGTPEQVDAVRSAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|448366616|ref|ZP_21554739.1| RNA-processing protein [Natrialba aegyptia DSM 13077]
gi|445654071|gb|ELZ06927.1| RNA-processing protein [Natrialba aegyptia DSM 13077]
Length = 186
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ +G++ V T DP +KA +++R + R +A+++L+D+M D++
Sbjct: 31 VRLDIDSEDGAVAVETVG---DPVRGLKAPEIVRAIGRGFAPEEALQLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ + VR
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGIIGTPPQVDAVRSAA 147
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 148 EMLLDGAPHGTVY 160
>gi|409095998|ref|ZP_11216022.1| RNA-processing protein [Thermococcus zilligii AN1]
Length = 236
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKER 148
G + ++ T KT DP + KARD++ + R +A ++ ++ ++I + +++ E+
Sbjct: 75 GEVFITATEKTDDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEVIDLTDVIIGNEK 134
Query: 149 --FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
+ R ++G T + +E ++G I V G TVA +G+ ++ + VE ++
Sbjct: 135 NALPRIRGRIIGRKGRTREIIEEMSGADISVYGKTVAIIGNPIQIEVAKTAVEKLVRGSP 194
Query: 207 HPVYHIKILMVKKELE 222
H V + + KK+LE
Sbjct: 195 HGVVYRYLERRKKDLE 210
>gi|448330229|ref|ZP_21519514.1| RNA-processing protein [Natrinema versiforme JCM 10478]
gi|445612134|gb|ELY65869.1| RNA-processing protein [Natrinema versiforme JCM 10478]
Length = 185
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V T DP + +K +++R + R A+++L+++M D++
Sbjct: 31 VRLDIDSENGSVAVETVG---DPVLGLKGPEIVRAIGRGFAPEDALRLLENDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E LTG +++ G+T+ +G+ + + VR
Sbjct: 88 IDAASRNKTDMKRKKGRLIGEGGRTRELMEELTGADVVIYGSTLGVIGAPQEVDVVRSAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMLLDGAPHGAVY 160
>gi|84490126|ref|YP_448358.1| RNA-processing protein [Methanosphaera stadtmanae DSM 3091]
gi|84373445|gb|ABC57715.1| predicted RNA-binding protein [Methanosphaera stadtmanae DSM 3091]
Length = 233
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKE 147
G++ +S+T +T DP I KAR +I+ + R A+ + +D++ +II + + V ++K+
Sbjct: 43 GNIAISSTDETDDPLAIWKARYMIKAIGRGFNPDIALTLENDDLILEIINLQDYVGKSKK 102
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
V+++ ++G N T + + + I + G TV+ +G + ++ R +E ++
Sbjct: 103 ALVRQKGRIIGKNGRTRQIMHDMLDVEISIYGKTVSLIGEIENIQMAREAIEMILE 158
>gi|124028254|ref|YP_001013574.1| putative RNA-processing protein [Hyperthermus butylicus DSM 5456]
gi|123978948|gb|ABM81229.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
Length = 192
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPN 160
PY+++KA++ +R ++ +A+++LDD+ +I + V + ++R + ++G
Sbjct: 59 PYMVMKAQEFVRAIAYGFSPERAMRVLDDDQVLVVIDLKQYVGDSPNHLQRVKGRIIGEK 118
Query: 161 SSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
K +E +TG YI + N VA +G F+ ++ +E +Q + H +
Sbjct: 119 GRARKTIEEMTGTYISIYDNYVAIIGDFETANIAKQAIEMLIQGRQHSTVY 169
>gi|57640735|ref|YP_183213.1| putative RNA-processing protein [Thermococcus kodakarensis KOD1]
gi|57159059|dbj|BAD84989.1| RNA-binding protein, containing KH domain [Thermococcus
kodakarensis KOD1]
Length = 238
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + ++ T +T DP + KARD++ + R +A ++ ++ +++ + +
Sbjct: 70 IEVDSETGEVFITATEETDDPLAVWKARDVVMAIGRGFSPERAFRLFNEGETLEVVNLTD 129
Query: 142 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
+V E+ + R ++G T + +E ++G I V G TVA +G+ ++ + VE
Sbjct: 130 IVVGNEKNALPRVRGRIIGRKGRTREIIEEMSGADISVYGKTVAIIGNPIQVEVAKTAVE 189
Query: 200 DCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 237
+ H V + + KK+LE + E + LP
Sbjct: 190 KLARGSPHGVVYRYLERRKKDLELEATTYYEALEGKLP 227
>gi|375084290|ref|ZP_09731296.1| putative RNA-processing protein [Thermococcus litoralis DSM 5473]
gi|374741050|gb|EHR77482.1| putative RNA-processing protein [Thermococcus litoralis DSM 5473]
Length = 220
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + +++T KT DP + KARD++ + R +A ++L++ +++ + +
Sbjct: 68 IEVDSQTGEVFITSTEKTDDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEVLEVVDLTD 127
Query: 142 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
+V E+ + R ++G T + +E ++G I V G TVA +G+ ++ + +E
Sbjct: 128 VVVGNEKNALPRVRGRIIGRKGRTREIIEEMSGTDISVYGKTVAIIGNPIQVQIAKTAIE 187
Query: 200 DCMQNKMHPVYHIKILMVKKELEKDPAL 227
+ H + + KK+LE + +
Sbjct: 188 KLAKGSPHGTVYKYLERRKKDLELEGGM 215
>gi|448350955|ref|ZP_21539765.1| RNA-processing protein [Natrialba taiwanensis DSM 12281]
gi|445635143|gb|ELY88314.1| RNA-processing protein [Natrialba taiwanensis DSM 12281]
Length = 186
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ +G++ V T DP +KA +++R + R +A+++L+D+M D++
Sbjct: 31 VRLDIDSEDGAVAVETVG---DPVRGLKAPEIVRAIGRGFAPEEALQLLEDDMVLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ + VR
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGIIGTPPQVDAVRSAA 147
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 148 EMLLDGAPHGTVY 160
>gi|76801154|ref|YP_326162.1| RNA-processing protein [Natronomonas pharaonis DSM 2160]
gi|76557019|emb|CAI48594.1| KH domain protein [Natronomonas pharaonis DSM 2160]
Length = 187
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ GS+ V + DP + +K D+++ + R +A+++L+D+MQ +I+
Sbjct: 31 VRLDIDSETGSVRVESVG---DPILGLKGPDIVKAIGRGFAPEEALRLLEDDMQLFEIVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK+ +++ L+G + T + + L+G +++ G+T+ +G+ + + VR
Sbjct: 88 IDAATRNKKDLRRKKGRLIGESGRTRELMAELSGADVVIYGSTLGIIGAPEQVDAVRSAA 147
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 148 EMILDGAPHGAVY 160
>gi|315230264|ref|YP_004070700.1| RNA-binding protein [Thermococcus barophilus MP]
gi|315183292|gb|ADT83477.1| RNA-binding protein [Thermococcus barophilus MP]
Length = 222
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 2/148 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + +S+T KT DP + KARD++ + R +A ++ ++ +II + +
Sbjct: 70 IEVDSETGEVFISSTEKTDDPLAVWKARDVVMAIGRGFSPERAFRLFNEGEVLEIINLSD 129
Query: 142 LVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
++ E+ + R ++G T + +E ++G I V G TVA +G+ ++ + +E
Sbjct: 130 IIIGNEKNALPRIRGRIIGRKGRTREIIEEMSGADISVYGKTVAIIGNPIQVEIAKTAIE 189
Query: 200 DCMQNKMHPVYHIKILMVKKELEKDPAL 227
+ H + + KK+LE + +
Sbjct: 190 KLAKGSPHGTVYKYLERRKKDLELEGGV 217
>gi|20093951|ref|NP_613798.1| RNA-processing protein [Methanopyrus kandleri AV19]
gi|19886904|gb|AAM01728.1| Predicted RNA-binding protein containing KH domain) [Methanopyrus
kandleri AV19]
Length = 202
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDII 137
GV ++ G + + T + +DP ++KA++ + + R +A ++L +E ++I
Sbjct: 41 GVELRIDSKTGEVEIRPTERVKDPLDLIKAKECVLAIGRGFSPERAFRLLREEDASLEVI 100
Query: 138 KIGNLV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
+ LV RN + ++R ++G T + +E L+G + ++G TVA +G+ + L+ R+
Sbjct: 101 DLYELVGRNPKALERQRARIIGREGRTRQLIEELSGADVSIRGKTVALIGTPRQLQIARK 160
Query: 197 IVEDCMQNKMH 207
+E H
Sbjct: 161 AIEMLASGAPH 171
>gi|300710112|ref|YP_003735926.1| KH domain-containing protein [Halalkalicoccus jeotgali B3]
gi|448297116|ref|ZP_21487164.1| RNA-processing protein [Halalkalicoccus jeotgali B3]
gi|299123795|gb|ADJ14134.1| KH domain protein [Halalkalicoccus jeotgali B3]
gi|445580298|gb|ELY34684.1| RNA-processing protein [Halalkalicoccus jeotgali B3]
Length = 187
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ G++ V T DP +K +++R + R A+++L DD M D+I
Sbjct: 31 VRLDVDSENGAVQVETVG---DPVTGLKGPEIVRAIGRGFAPEDAMELLEDDVMLFDLID 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK+ +++ L+G T + +E L+G +++ G+T+ +G + + VR
Sbjct: 88 IDAAARNKKDLQRKKGRLIGEGGRTRQIMEELSGANVVIYGSTMGVIGRPEQVSMVREAA 147
Query: 199 EDCMQNKMH 207
E ++ H
Sbjct: 148 EMILEGAPH 156
>gi|448363887|ref|ZP_21552482.1| RNA-processing protein [Natrialba asiatica DSM 12278]
gi|445645471|gb|ELY98475.1| RNA-processing protein [Natrialba asiatica DSM 12278]
Length = 186
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIK 138
V +++ +G++ V T DP +K +++R + R +A+++L+D+M D++
Sbjct: 31 VRLDIDSEDGAVAVETVG---DPVRGLKGPEIVRAIGRGFAPEEALQLLEDDMMLFDVVD 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK +++ L+G T + +E L+G +++ G+T+ +G+ + VR
Sbjct: 88 IDAAARNKNDLKRQKGRLIGEGGRTRELMEELSGASVVIYGSTLGIIGTPPQVDAVRSAA 147
Query: 199 EDCMQNKMHPVYH 211
E + H +
Sbjct: 148 EMLLDGAPHGTVY 160
>gi|325960092|ref|YP_004291558.1| KH domain-containing protein [Methanobacterium sp. AL-21]
gi|325331524|gb|ADZ10586.1| KH domain protein [Methanobacterium sp. AL-21]
Length = 192
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 89 GSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKE 147
GS++VS T T DP + K+R +++ + R ++K+L DE +II + + V ++K+
Sbjct: 43 GSISVSPTEATEDPLAVWKSRYIVKAIGRGFNPEISLKLLSDETLLEIINLPDYVGKSKK 102
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
++++ ++G T + +TG I + G TVA +G + + + VE + H
Sbjct: 103 AIMRQKARIIGKEGRTKDIIIDMTGVDISIYGKTVAIIGGMEQIHIAKEAVEMILNGVRH 162
Query: 208 -PVY 210
VY
Sbjct: 163 KTVY 166
>gi|347523322|ref|YP_004780892.1| KH domain containing protein [Pyrolobus fumarii 1A]
gi|343460204|gb|AEM38640.1| KH domain protein [Pyrolobus fumarii 1A]
Length = 204
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPN 160
PY+++KAR+ +R ++ +A+++LD++ +I + V + ++R + ++G
Sbjct: 70 PYMVMKAREFVRAVAYGFSPERAMRVLDEDQVLIVIDLKQYVGDAPNHLQRIKGRIIGEQ 129
Query: 161 SSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
+ +E +TG YI V + VA +G ++ + R +E ++ + H +
Sbjct: 130 GRARRTIEEMTGTYISVYDSYVAIIGDYESAQAAREAIEMLIEGRQHSTVY 180
>gi|341581300|ref|YP_004761792.1| putative RNA-processing protein [Thermococcus sp. 4557]
gi|340808958|gb|AEK72115.1| putative RNA-processing protein [Thermococcus sp. 4557]
Length = 248
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + +++T +T DP + KARD++ + R +A ++ ++ +++ + +
Sbjct: 70 IEVDSETGEVFITSTEETSDPLAVWKARDVVMAIGRGFSPERAFRLFNEGEVLEVVNLTD 129
Query: 142 LV--RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
++ +K + R ++G T + +E ++G + V G TVA +G+ ++ + +E
Sbjct: 130 VIVGNDKNALPRVRGRIIGRKGRTREIIEEMSGADVSVYGKTVAIIGNPIQVEVAKTAIE 189
Query: 200 DCMQNKMHPVYHIKILMVKKELE 222
+ H V + + KK+LE
Sbjct: 190 KLARGSPHGVVYKYLERRKKDLE 212
>gi|448417245|ref|ZP_21579263.1| RNA-processing protein [Halosarcina pallida JCM 14848]
gi|445678468|gb|ELZ30961.1| RNA-processing protein [Halosarcina pallida JCM 14848]
Length = 180
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + A D++R + R A+ +LDD+M+ ++I + RNK +++ L+G
Sbjct: 49 DPVAGMLAPDIVRAIGRGFTPEAALSLLDDDMRTFELIDLQQHTRNKNDLQRQKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
N T + +E L+G ++++G T+ +G + ++ VRR + H + +
Sbjct: 109 NGRTRELMEELSGADVVIRGTTLGIIGQPEEVEAVRRATGMLLDGAPHGAVYSFLERKHN 168
Query: 220 ELEKD 224
EL +D
Sbjct: 169 ELTRD 173
>gi|390962070|ref|YP_006425904.1| hypothetical protein containing KH domain [Thermococcus sp. CL1]
gi|390520378|gb|AFL96110.1| hypothetical protein containing KH domain [Thermococcus sp. CL1]
Length = 238
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + ++ T+ T DP + KARD++ + R +A ++ ++ ++I + +
Sbjct: 70 IEVDSETGEVFITATKDTDDPLAVWKARDVVMAIGRGFSPERAFRLFNEGEMLEVINLTD 129
Query: 142 LV--RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
++ +K + R ++G T + +E ++G + V G TVA +G+ ++ + +E
Sbjct: 130 IIVGNDKNALPRVRGRIIGRKGRTREIIEEMSGADVSVYGKTVAIIGNPIQVEVAKTAIE 189
Query: 200 DCMQNKMHPVYHIKILMVKKELE 222
+ H V + + KK+LE
Sbjct: 190 KLARGSPHGVVYKYLERRKKDLE 212
>gi|48477323|ref|YP_023029.1| RNA-processing protein [Picrophilus torridus DSM 9790]
gi|48429971|gb|AAT42836.1| putative RNA-binding protein [Picrophilus torridus DSM 9790]
Length = 186
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 95 TTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI----GNLVRNKERFV 150
T + +D + A ++++ ++R +A+ + ++ MQ +I + GN N R
Sbjct: 49 TVYQKKDALKALIALNVVQAIARGFSPEKALTLFNENMQLIVISLKDFAGN---NSNRIN 105
Query: 151 KRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PV 209
+ R ++G N T + +E LT YI V GNTV+ +G F G+ + VE + + H V
Sbjct: 106 ELRGRVIGRNGRTRQIIEELTNTYISVSGNTVSIIGDFIGIGYSKEAVEMLLLGRKHKTV 165
Query: 210 Y 210
Y
Sbjct: 166 Y 166
>gi|212223914|ref|YP_002307150.1| putative RNA-processing protein [Thermococcus onnurineus NA1]
gi|212008871|gb|ACJ16253.1| RNA-binding protein [Thermococcus onnurineus NA1]
Length = 234
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 82 CELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGN 141
E++ G + ++ T+ T DP + KARD++ + R +A ++ ++ ++I + +
Sbjct: 70 IEVDSETGEVFITATKDTDDPLAVWKARDVVTAIGRGFSPERAFRLFNEGEVLEVINLTD 129
Query: 142 LV--RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
++ +K + R ++G T + +E ++G + V G TVA +G+ ++ + +E
Sbjct: 130 IIIGNDKNALPRVRGRIIGRKGRTREIIEEMSGADVSVYGKTVAIIGNPIQVEVAKTAIE 189
Query: 200 DCMQNKMHPVYHIKILMVKKELEKDPAL------ANENWDRF 235
+ H V + + KK+LE + +EN++ F
Sbjct: 190 KLAKGSPHGVVYKYLERRKKDLELESVTYYEALGGSENFEGF 231
>gi|296109403|ref|YP_003616352.1| KH domain protein [methanocaldococcus infernus ME]
gi|295434217|gb|ADG13388.1| KH domain protein [Methanocaldococcus infernus ME]
Length = 208
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKE 147
+G++T+ ++ DP + KA+D+++ ++R A+++L D+ +II I + +++
Sbjct: 49 DGTVTI-YSKNNEDPLALWKAKDIVKAIARGFNPEIALRLLSDDYVLEIINIEDYAKSEN 107
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+ + ++G + + +E LTG + V G TV+ +G ++ + VE ++ H
Sbjct: 108 SLRRLKGRVIGKEGKSRRYIEELTGASVSVYGKTVSIVGEADQVQIAKEAVEMLLRGASH 167
Query: 208 P 208
Sbjct: 168 S 168
>gi|240103481|ref|YP_002959790.1| putative RNA-processing protein [Thermococcus gammatolerans EJ3]
gi|239911035|gb|ACS33926.1| RNA-binding protein, containing KH domain [Thermococcus
gammatolerans EJ3]
Length = 234
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
G E++ G + ++ T+KT+DP + KARD++ + R +A ++ ++ +I+
Sbjct: 67 GTKIEVDSETGEVFITATKKTKDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEIVN 126
Query: 139 IGNLVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
+ ++V E+ + R ++G T + +E ++G + V G TVA +G+ ++ R
Sbjct: 127 LTDIVVGNEKNALPRVRGRIIGRRGRTREIIEEMSGADVSVYGKTVAIIGNPIQVEVART 186
Query: 197 IVEDCMQNKMHPVYHIKILMVKKELE 222
VE + H V + + KK+LE
Sbjct: 187 AVEKLARGSPHGVVYRYLERRKKDLE 212
>gi|330506562|ref|YP_004382990.1| hypothetical protein MCON_0291 [Methanosaeta concilii GP6]
gi|328927370|gb|AEB67172.1| conserved hypothetical protein [Methanosaeta concilii GP6]
Length = 180
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 81 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIKI 139
S E++ G+++V++ DP +++ DL++ + R +A+ ILDDEM D++ I
Sbjct: 31 SLEIDSDTGTISVTSAE---DPLQVLRVMDLVKAIGRGFSPERALAILDDEMLMLDVLDI 87
Query: 140 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
+ + + ++G + + + +E L+G + V G TVA +G + ++ R +E
Sbjct: 88 SKTAGTRSDMERLKGRIIGKDGRSREIMERLSGTKVSVYGKTVAILGYPEQIRVARAAIE 147
Query: 200 DCMQNKMH 207
+ H
Sbjct: 148 MLLDGAPH 155
>gi|344213153|ref|YP_004797473.1| putative RNA-processing protein/KH type 1 domain-containing protein
[Haloarcula hispanica ATCC 33960]
gi|343784508|gb|AEM58485.1| putative RNA-processing protein / KH type 1 domain protein
[Haloarcula hispanica ATCC 33960]
Length = 179
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ +G++ V + DP +K D+++ + R A+ +L DD M ++I
Sbjct: 28 VRLDIDSEDGTVKVESVG---DPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELID 84
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK F +++ L+G T + ++ L+G +++ G+T+ +G + + VR
Sbjct: 85 IEAASRNKNDFRRQKGRLIGEGGRTRELMQELSGAAVVIYGSTLGIIGGPEQVDAVREAA 144
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 145 EMILDGAPHGSVY 157
>gi|6441092|dbj|BAA78603.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 72
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 39/62 (62%), Gaps = 10/62 (16%)
Query: 10 NKKHKGK--HDKPKPWDEDPNIDHWK----VEKFDPFWNEGGMLEVSSFSTLFPQYREKY 63
NK +GK + K KPWD D IDHW V K D N G+LE SSF+ LFP+YREKY
Sbjct: 15 NKPKRGKQANRKEKPWDHD-GIDHWALPPPVTKED---NPTGLLEESSFAVLFPKYREKY 70
Query: 64 LQ 65
L+
Sbjct: 71 LR 72
>gi|55379140|ref|YP_136990.1| RNA-processing protein [Haloarcula marismortui ATCC 43049]
gi|448664456|ref|ZP_21684259.1| RNA-processing protein [Haloarcula amylolytica JCM 13557]
gi|448683897|ref|ZP_21692517.1| RNA-processing protein [Haloarcula japonica DSM 6131]
gi|55231865|gb|AAV47284.1| unknown [Haloarcula marismortui ATCC 43049]
gi|445775101|gb|EMA26115.1| RNA-processing protein [Haloarcula amylolytica JCM 13557]
gi|445783470|gb|EMA34299.1| RNA-processing protein [Haloarcula japonica DSM 6131]
Length = 182
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ +G++ V + DP +K D+++ + R A+ +L DD M ++I
Sbjct: 31 VRLDIDSEDGTVKVESVG---DPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELID 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK F +++ L+G T + ++ L+G +++ G+T+ +G + + VR
Sbjct: 88 IEAASRNKNDFRRQKGRLIGEGGRTRELMQELSGAAVVIYGSTLGIIGGPEQVDAVREAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMILDGAPHGSVY 160
>gi|333986521|ref|YP_004519128.1| KH domain-containing protein [Methanobacterium sp. SWAN-1]
gi|333824665|gb|AEG17327.1| KH domain protein [Methanobacterium sp. SWAN-1]
Length = 192
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Query: 81 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIG 140
+ E++ GS+ +S T DP + K R +++ + R A+K+ D++ +II +
Sbjct: 35 NIEIDSETGSIAISPREDTEDPLSVWKTRYIVKAIGRGFNPEIALKLTSDDLILEIINLP 94
Query: 141 NLV-RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE 199
+ V ++K+ ++++ ++G + T + +TG + V G TVA +G + + + VE
Sbjct: 95 DYVGKSKKAVLRQKGRIIGKDGRTRDIITDMTGVNVSVYGKTVAMIGDMERIHIAKEAVE 154
Query: 200 DCMQNKMHPVYHIKILMVKKEL 221
++ H + + M +EL
Sbjct: 155 MILKGARHKSVYAFLEMKSREL 176
>gi|448655130|ref|ZP_21681982.1| RNA-processing protein [Haloarcula californiae ATCC 33799]
gi|448680413|ref|ZP_21690730.1| RNA-processing protein [Haloarcula argentinensis DSM 12282]
gi|445765579|gb|EMA16717.1| RNA-processing protein [Haloarcula californiae ATCC 33799]
gi|445768857|gb|EMA19934.1| RNA-processing protein [Haloarcula argentinensis DSM 12282]
Length = 182
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEMQCDIIK 138
V +++ +G++ V + DP +K D+++ + R A+ +L DD M ++I
Sbjct: 31 VRLDIDSEDGTVKVESVG---DPVTALKGPDIVKAIGRGFAPDDALALLEDDMMMFELID 87
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
I RNK F +++ L+G T + ++ L+G +++ G+T+ +G + + VR
Sbjct: 88 IEAASRNKNDFRRQKGRLIGEGGRTRELMQELSGAAVVIYGSTLGIIGGPEQVDAVREAA 147
Query: 199 EDCMQNKMH-PVY 210
E + H VY
Sbjct: 148 EMILDGAPHGSVY 160
>gi|374629194|ref|ZP_09701579.1| KH domain protein [Methanoplanus limicola DSM 2279]
gi|373907307|gb|EHQ35411.1| KH domain protein [Methanoplanus limicola DSM 2279]
Length = 180
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNK 146
EG +TVS DP ++ +IR ++R +A+ +LDDE M DII +
Sbjct: 41 EGLVTVSG----EDPVNVLNTSQIIRAINRGFSPQRALTLLDDEDMMLDIIDLTAYCNTT 96
Query: 147 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
++ + R ++G + + +E +TG + V G TVA +G + ++ R VE ++
Sbjct: 97 KQMERIRGRIIGREGKSREQIEDMTGAIMSVLGKTVAIIGEVEQVRNTRTAVEMLIEGLP 156
Query: 207 H 207
H
Sbjct: 157 H 157
>gi|256072157|ref|XP_002572403.1| hypothetical protein [Schistosoma mansoni]
gi|353233460|emb|CCD80815.1| hypothetical protein Smp_009340 [Schistosoma mansoni]
Length = 177
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 227 LANENWDRFLPKFKKKNVKQ-----KKV---KSKEKKPYTPFPPPPQPSKIDKLLESGEY 278
A+ ++ PK+++K + + +++ ++KK Y PFPPPP SKID LE G Y
Sbjct: 60 FASSSYTTLFPKYREKYLTEIWPVLRRIMMEHVRKKKEYNPFPPPPVQSKIDIELEKGTY 119
Query: 279 FLSERKKESKKWQEKQEKQAEKTAE-NKRKRDAAFIPP 315
FL+E +++ K + K + + E K KR AA IPP
Sbjct: 120 FLAEAERKRLKVESNITKSNQISKERQKAKRSAALIPP 157
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 32 WKVEKFDPFWN-EGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY 78
WK KF+P N G + SS++TLFP+YREKYL E WP+++ + E+
Sbjct: 44 WKEPKFNPEDNPHGRLFASSSYTTLFPKYREKYLTEIWPVLRRIMMEH 91
>gi|126180438|ref|YP_001048403.1| RNA-processing protein [Methanoculleus marisnigri JR1]
gi|125863232|gb|ABN58421.1| KH, type 1, domain protein [Methanoculleus marisnigri JR1]
Length = 180
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDII 137
G++ ++ EG +T+ + DP ++ A +++ ++R +A ++LDDE M DI+
Sbjct: 32 GITLRIDSEEGLVTL----EGEDPVGVMTATNVVSAINRGFSPERAFRLLDDEDMMLDIL 87
Query: 138 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 197
+ +L + + R ++G + ++ +E +T I V G TVA +G + R+
Sbjct: 88 DLADLSGTTRQLERLRGRIIGKSGTSRAQIEDMTATEISVHGKTVAIIGLPDQAETARKA 147
Query: 198 VEDCMQNKMH 207
+E +Q H
Sbjct: 148 IEMLIQGVPH 157
>gi|452208196|ref|YP_007488318.1| KH domain protein [Natronomonas moolapensis 8.8.11]
gi|452084296|emb|CCQ37635.1| KH domain protein [Natronomonas moolapensis 8.8.11]
Length = 187
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP + + D+++ + R A ++L+D+MQ +++ I RNK+ +++ L+G
Sbjct: 49 DPIVGLNGPDIVKAIGRGFAPEDAFRLLEDDMQMFELVDIEAATRNKKDLRRKKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
+ T + + L+G ++V G T+ +GS + + VR E + H +
Sbjct: 109 DGRTRELMAELSGADVVVYGTTLGIIGSPEQVDAVRSAAEMILDGAPHGAVY 160
>gi|345560486|gb|EGX43611.1| hypothetical protein AOL_s00215g347 [Arthrobotrys oligospora ATCC
24927]
Length = 252
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 8/200 (4%)
Query: 2 GENMEKTVNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYRE 61
E + TV H+ D + ID F P + ++ + P +R
Sbjct: 31 AETLSTTVESTENPLHE-----DTEMRIDEEGRPVFQPAKQSQKIYKIETRKVPVPPHRF 85
Query: 62 KYLQEAWPMVKGALKEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVP 120
L+ AWP + + E+ V +NL + + +KT DP + KA D +++ +
Sbjct: 86 SPLKAAWPKIYQPIVEHLKVDVRMNLANKCVEIRNNKKTEDPGALQKAADFVKVFTLGFD 145
Query: 121 APQAIKILD-DEMQCDIIKIGNL-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQ 178
AI +L DE+ + +I ++ E + + G + T A+E T I++
Sbjct: 146 IDDAIALLRLDELYTETFEIKDVKTLQGEHLSRAIGRIAGKDGKTRFAIENATKTRIVLA 205
Query: 179 GNTVAAMGSFKGLKQVRRIV 198
+ + +G+F+ ++ R V
Sbjct: 206 DSKIHILGAFQNIRMAREAV 225
>gi|397781781|ref|YP_006546254.1| KH domain-containing protein [Methanoculleus bourgensis MS2]
gi|396940283|emb|CCJ37538.1| KH domain-containing protein [Methanoculleus bourgensis MS2]
Length = 208
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIK 138
+S +++ EG++ + + DP ++ A +++ ++R +A ++L+DE M +II
Sbjct: 61 ISLQIDSEEGTVMI----EGDDPIAVMTATSVVQAINRGFSPERAFRLLEDEDMMLEIIN 116
Query: 139 IGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ +L + R ++G ++ +E +T I V G TVA +G + + R+ V
Sbjct: 117 LADLTDTARHLERLRGRIIGKAGTSRAQIEDMTNTEISVHGKTVAIIGLPEQNEIARKAV 176
Query: 199 EDCMQNKMHPVYHIKILMVKKELEKD 224
E +Q H + + KKE ++D
Sbjct: 177 EMLIQGVPHENVYAFLDRKKKEAKRD 202
>gi|315425458|dbj|BAJ47121.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
gi|343484294|dbj|BAJ49948.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 201
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 50 SSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSCELNLVEGSMTVSTTR---KTRDPYII 105
SSF P+ R L VK ++ GVS +++ EG++ +S + + DP +
Sbjct: 13 SSFVVNIPRERVGVLIGEGGSVKAEIERLLGVSLQVDSSEGTVVISLAKPVEEGGDPASL 72
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSSTL 164
KARD++ + R +A+K+++D +I + + V + + R + ++G T
Sbjct: 73 FKARDIVTAIGRGFSPEKALKLVEDGTVLTVIDLTDYVGDSPNHLARVKARVIGTQGKTR 132
Query: 165 KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+ +E + V G+TVA +G ++ + V ++ H
Sbjct: 133 RIIEETCQVDVSVYGDTVAIIGEYENARAAEEAVVTLVRGAPH 175
>gi|307354951|ref|YP_003896002.1| KH domain-containing protein [Methanoplanus petrolearius DSM 11571]
gi|307158184|gb|ADN37564.1| KH domain protein [Methanoplanus petrolearius DSM 11571]
Length = 180
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKERFVKRRQHLVGP 159
D +++KA D+I ++R ++ +L+DE M DII + +N ++ + R ++G
Sbjct: 50 DAPLVLKAADIITAINRGFSPKRSFCLLEDEDMMLDIIDLTAACKNPKQMERVRGRIIGK 109
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+ +E +TG I V G TVA +G + +K R +E ++ H
Sbjct: 110 AGKAREQIEDMTGAEISVLGKTVAIIGGIEQVKTARHAIEMLIEGMPH 157
>gi|320101295|ref|YP_004176887.1| KH domain-containing protein [Desulfurococcus mucosus DSM 2162]
gi|319753647|gb|ADV65405.1| KH domain protein [Desulfurococcus mucosus DSM 2162]
Length = 205
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 163
++KARD++R ++ +A ++LD++ +I + V +K +KR ++G
Sbjct: 70 LMKARDIVRAIAYGFSPERAFRLLDEDQVLVVIDVRQYVGDKPNHIKRVLGRVIGEEGRA 129
Query: 164 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
+ LE TG YI + +A +G ++ R VE +Q + H +
Sbjct: 130 RRVLEEATGTYISIYEPYIAIIGDYESANIARTAVEMLIQGRTHSTVY 177
>gi|335441209|ref|ZP_08561929.1| putative RNA-processing protein [Halorhabdus tiamatea SARL4B]
gi|334888250|gb|EGM26551.1| putative RNA-processing protein [Halorhabdus tiamatea SARL4B]
Length = 182
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP +K D+++ + R A+++L+++M D+I I + RN + + L+G
Sbjct: 49 DPVTALKGPDIVKAIGRGFAPEDALRLLENDMMLFDVIDIDAVARNPNDRKRLKGRLIGE 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 210
+ T + +E LTG + + G+T++ +G + ++ VR E + H VY
Sbjct: 109 DGRTRELMEDLTGADVAIYGSTLSIIGGPEQVEAVREAAEMILDGAPHGSVY 160
>gi|330835297|ref|YP_004410025.1| putative RNA-processing protein [Metallosphaera cuprina Ar-4]
gi|329567436|gb|AEB95541.1| putative RNA-processing protein [Metallosphaera cuprina Ar-4]
Length = 180
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLV 157
K ++PY +K +I L VP A K++ +E D+I + L +K + + ++
Sbjct: 42 KNQNPYQALKTVSVINALGLGVPVSDAFKLIGEEYILDVIDLKQLSHDKAVMSRIKGRII 101
Query: 158 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
G T + ++ TG I+V + VA +G+++ + ++ +E ++ K H +
Sbjct: 102 GEGGKTKRIIQEYTGVTIVVSDHHVALIGTYEQIPIAKKALELILKGKEHSTVY 155
>gi|219853339|ref|YP_002467771.1| RNA-processing protein [Methanosphaerula palustris E1-9c]
gi|219547598|gb|ACL18048.1| KH type 1 domain protein [Methanosphaerula palustris E1-9c]
Length = 179
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKERFVKRRQHLVGP 159
D ++ A ++IR ++R A +LDDE M D+I++ + + + + R ++G
Sbjct: 49 DAVGVLLAGEVIRAINRGFSPAHAFTLLDDEDMILDVIELSSTGDTQRQLDRLRGRIIGR 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKK 219
+ S+ + +E +T Y+ V G TVA +G +K R +E ++ H + KK
Sbjct: 109 DGSSREQIETMTSTYLSVYGKTVAIIGLPDQVKNARAGIEMLIKGIPHESVFAFLDRKKK 168
Query: 220 ELEKD 224
EL++D
Sbjct: 169 ELKQD 173
>gi|147921591|ref|YP_684592.1| putative RNA-processing protein [Methanocella arvoryzae MRE50]
gi|56295562|emb|CAH04804.1| RNA-binding protein [uncultured archaeon]
gi|110619988|emb|CAJ35266.1| conserved hypothetical protein [Methanocella arvoryzae MRE50]
Length = 181
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKER 148
S TV K DP+ +KA D I+ ++R +A+K+LD E + D++ + +
Sbjct: 40 SGTVVIDSKEGDPFKALKASDAIKAIARGFSPEKALKLLDSEDLILDMMDLSKITDTPSD 99
Query: 149 FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
+ + ++G T + +E +TG I V G T++ +G + + VR ++ + H
Sbjct: 100 LTRIKGRIIGRGGKTREIIESMTGAKISVYGKTISIIGDAEQIMTVRTALDMLIDGAPHG 159
Query: 209 VYH 211
+
Sbjct: 160 AVY 162
>gi|297527325|ref|YP_003669349.1| KH domain-containing protein [Staphylothermus hellenicus DSM 12710]
gi|297256241|gb|ADI32450.1| KH domain protein [Staphylothermus hellenicus DSM 12710]
Length = 190
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 163
++KARD++R ++ +A ++LD++ II + V +K ++R + ++G
Sbjct: 60 LMKARDVVRAIAYGFSPERAFRLLDEDQVLLIIDLKQYVGDKPNHLQRVKGRIIGEGGKA 119
Query: 164 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
K +E +TG Y+ + N VA +G F+ + +E ++ + H +
Sbjct: 120 RKIIEEMTGTYVSIYKNYVAIIGDFESANIAKTAIELLIEGRRHSTVY 167
>gi|146303436|ref|YP_001190752.1| RNA-processing protein [Metallosphaera sedula DSM 5348]
gi|145701686|gb|ABP94828.1| KH, type 1, domain protein [Metallosphaera sedula DSM 5348]
Length = 178
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/114 (18%), Positives = 60/114 (52%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLV 157
K ++PY +K +IR + V A+K++ +E+ D+I + + +++ + + ++
Sbjct: 42 KNQNPYQALKVVSVIRAIGLGVSVSDALKLMGEEVMMDVIDLKEISNSRDNMTRVKGRII 101
Query: 158 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
G T K ++ TG +++ G+ + +G+++ + ++ +E ++ + H +
Sbjct: 102 GEGGKTKKIIQEYTGVSVVISGHYITLLGNYEQIPIAKKALELLVKGREHSTVY 155
>gi|390938910|ref|YP_006402648.1| KH domain-containing protein [Desulfurococcus fermentans DSM 16532]
gi|390192017|gb|AFL67073.1| KH domain protein [Desulfurococcus fermentans DSM 16532]
Length = 211
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 163
++KARD++R ++ +A ++LD++ +I + V +K VKR ++G +
Sbjct: 70 LMKARDIVRAVAYGFSPERAFRLLDEDQILLVIDVRQYVGDKPNHVKRVLGRVIGEDGKA 129
Query: 164 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
+ LE TG YI V VA +G ++ R +E ++ + H +
Sbjct: 130 RRVLEETTGTYISVYEPYVAIIGDYESANIARTAIEMLVEGRTHATVY 177
>gi|126466002|ref|YP_001041111.1| RNA-processing protein [Staphylothermus marinus F1]
gi|126014825|gb|ABN70203.1| KH, type 1, domain protein [Staphylothermus marinus F1]
Length = 200
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 163
++KARD++R ++ +A ++LD++ +I + V ++ ++R + ++G
Sbjct: 70 LMKARDVVRAIAYGFSPERAFRLLDEDQVLLVIDLKQYVGDRPNHLQRVKGRIIGEGGKA 129
Query: 164 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
+ +E +TG YI V N VA +G F+ + +E ++ + H +
Sbjct: 130 RRIIEEMTGTYISVYKNYVAIIGDFESANIAKTAIELLIEGRRHSTVY 177
>gi|282164202|ref|YP_003356587.1| hypothetical protein MCP_1532 [Methanocella paludicola SANAE]
gi|282156516|dbj|BAI61604.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 180
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDE-MQCDII 137
G + +++ G++ + T D + +KA ++I+ ++R +A+K+L++E + D+I
Sbjct: 31 GATVDVDSESGTVVIGTEA---DAFKALKAAEVIKAVARGFSPEKALKLLENEDLVLDVI 87
Query: 138 KIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRI 197
+ NL + + + ++G N T + +E ++G + V G T++ +G + L VR
Sbjct: 88 DLSNLTDSPSDLKRLKGRIIGRNGKTREVIEQMSGARVSVYGKTISIIGDSEQLATVREA 147
Query: 198 VEDCMQNKMHPVYH 211
+ + H +
Sbjct: 148 LNMLIDGAPHGAVY 161
>gi|223478282|ref|YP_002582500.1| RNA-binding protein [Thermococcus sp. AM4]
gi|214033508|gb|EEB74335.1| RNA-binding protein, containing KH domain [Thermococcus sp. AM4]
Length = 232
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIK 138
G E++ G + +++T++T+DP + KARD++ + R +A ++ ++ +I+
Sbjct: 67 GTKIEVDSETGEVFITSTKETKDPLAVWKARDVVLAIGRGFSPERAFRLFNEGETLEIVN 126
Query: 139 IGNLVRNKER--FVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
+ ++V E+ + R ++G T + +E ++G + V G TVA +G+ ++ R
Sbjct: 127 LTDIVVGNEKNALPRVRGRIIGRRGRTREIIEEMSGADVSVYGKTVAIIGNPIQVEVART 186
Query: 197 IVEDCMQNKMHPVYHIKILMVKKELE 222
+E + H V + + KK+LE
Sbjct: 187 AIEKLAKGSPHGVVYRYLERRKKDLE 212
>gi|218884399|ref|YP_002428781.1| putative RNA-processing protein [Desulfurococcus kamchatkensis
1221n]
gi|218766015|gb|ACL11414.1| Predicted RNA-binding protein (contains KH domains)
[Desulfurococcus kamchatkensis 1221n]
Length = 211
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 163
++KARD++R ++ +A K+ D++ +I + V +K VKR ++G +
Sbjct: 70 LMKARDIVRAVAYGFSPERAFKLFDEDQILLVIDVRQYVGDKPNHVKRVLGRVIGEDGKA 129
Query: 164 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
+ LE TG YI V VA +G ++ R +E ++ + H +
Sbjct: 130 RRVLEETTGTYISVYEPYVAIIGDYESANIARTAIEMLVEGRTHATVY 177
>gi|374632061|ref|ZP_09704435.1| universal archaeal KH domain protein [Metallosphaera
yellowstonensis MK1]
gi|373525891|gb|EHP70671.1| universal archaeal KH domain protein [Metallosphaera
yellowstonensis MK1]
Length = 182
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 60/114 (52%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLV 157
K PY +K +I+ + VP+ +A+K++ ++ ++I + + +KE ++ + ++
Sbjct: 42 KNVSPYEAMKVVSVIKAVGYGVPSEEALKLMGEDYILEVIDLKESLGSKESLIRVKGRII 101
Query: 158 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
G + T + ++ TG I V + V +G+++ L R+ +E ++ + H +
Sbjct: 102 GEDGKTKRIIQEYTGVRIHVGDHFVVMLGTYEQLPIARKAIELLIKGREHSTVY 155
>gi|255587353|ref|XP_002534241.1| conserved hypothetical protein [Ricinus communis]
gi|223525652|gb|EEF28140.1| conserved hypothetical protein [Ricinus communis]
Length = 51
Score = 46.6 bits (109), Expect = 0.018, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEK 223
R+IVEDC+QNK+H VYHIKIL++K L++
Sbjct: 1 RKIVEDCIQNKLHQVYHIKILVMKNSLKR 29
>gi|361131250|gb|EHL02948.1| putative Ribosomal RNA assembly protein KRR1 [Glarea lozoyensis
74030]
Length = 119
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 250 KSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKE 286
K K KK YTPFPPP + SK+D +ESGEYFL ++ KE
Sbjct: 18 KWKSKKVYTPFPPPQEKSKVDLQIESGEYFLGKQAKE 54
>gi|284161872|ref|YP_003400495.1| KH type 1 domain-containing protein [Archaeoglobus profundus DSM
5631]
gi|284011869|gb|ADB57822.1| KH type 1 domain protein [Archaeoglobus profundus DSM 5631]
Length = 177
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIKIGNLVRNKERFVKR-RQHLVG 158
DPY ++ +D+++ ++ AIK+L+D+M D+I + + V +R ++R + ++G
Sbjct: 49 DPYKFMRVQDVVKAIAHGFNPDIAIKLLEDDMITLDVIDLTSYV--SDRHLQRIKGRIIG 106
Query: 159 PNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
S K LE L ++ V G TVA +G + + R +E + H
Sbjct: 107 KEGSMRKTLEDLLNVHVSVYGKTVAILGDVESVAIAREAIEMLINGAQHS 156
>gi|255566716|ref|XP_002524342.1| conserved hypothetical protein [Ricinus communis]
gi|223536433|gb|EEF38082.1| conserved hypothetical protein [Ricinus communis]
Length = 135
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 22/25 (88%)
Query: 122 PQAIKILDDEMQCDIIKIGNLVRNK 146
PQAIKIL DEMQ DIIKIGNLVR K
Sbjct: 61 PQAIKILHDEMQWDIIKIGNLVRTK 85
>gi|159041550|ref|YP_001540802.1| putative RNA-processing protein [Caldivirga maquilingensis IC-167]
gi|157920385|gb|ABW01812.1| KH type 1 domain protein [Caldivirga maquilingensis IC-167]
Length = 184
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 81 SCELNL-----VEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
S E+NL V+ V T + +P ++KAR +I+ L+ A+++L+D+ D
Sbjct: 28 SIEVNLKVQVEVKDDSVVLTPMQDANPDSVIKARQIIQALALGFSRDDALELLNDDKYLD 87
Query: 136 IIKIGNLV-RNKERFVKR-RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
++ + + + ++KE + R + ++G + LE LT I V+ V +G++ ++
Sbjct: 88 VVDLSDYIGKDKENHLSRIKAIIIGEGGKVKRNLEELTETKIAVKDKAVGIIGNYDNVRA 147
Query: 194 VRRIVEDCMQNKMHPVYH 211
VR + + + H +
Sbjct: 148 VRDAIVMLINGRQHSTVY 165
>gi|119467906|ref|XP_001257759.1| rRNA processing protein (Rrp20), putative [Neosartorya fischeri
NRRL 181]
gi|119405911|gb|EAW15862.1| rRNA processing protein (Rrp20), putative [Neosartorya fischeri
NRRL 181]
Length = 260
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 10/196 (5%)
Query: 6 EKTVNKKHKGKHDKPK------PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQY 59
E ++ + G+ + P D D ID F P + G +L V + P +
Sbjct: 31 EILIDAQASGQGEAPSLIPTESAQDSDMRIDEESRPVFTPIADAGTVLRVETRKVPVPPH 90
Query: 60 REKYLQEAWPMVKGALKEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRS 118
R L+ WP + L E+ + +N+ ++ + T++ T D + K D ++ +
Sbjct: 91 RMTPLKANWPKIYPPLVEHLKLQVRMNIKNRAVELRTSKFTTDTGALQKGEDFVKAFTLG 150
Query: 119 VPAPQAIKILD-DEMQCDIIKIGNL--VRNKERFVKRRQHLVGPNSSTLKALEILTGCYI 175
AI +L D++ +I ++ N E + + G + T A+E + +
Sbjct: 151 FDVDDAIALLRLDDLYIRSFEIRDVKASLNGEHLSRAIGRIAGKDGKTKFAIENASRTRV 210
Query: 176 LVQGNTVAAMGSFKGL 191
++QG V +G F+ L
Sbjct: 211 VLQGTKVTILGRFRDL 226
>gi|429216945|ref|YP_007174935.1| KH domain-containing protein [Caldisphaera lagunensis DSM 15908]
gi|429133474|gb|AFZ70486.1| KH domain protein [Caldisphaera lagunensis DSM 15908]
Length = 198
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 80 VSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKI 139
V E++ +T+ P ++KA+D+I+ LS +A+K+LD+E +I I
Sbjct: 43 VKVEIDNNSSLITIEPLDNNTSPADMMKAKDIIQALSIGFVKEEALKLLDEENVLIVIDI 102
Query: 140 GNLVRNKERFVKRRQ-HLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ V + +KR ++G + + +E +TG I + N + +G + + +
Sbjct: 103 KSKVGDSNNHIKRVMGRIIGEDGRAKRTIEEITGTSIHIGNNLIGVIGDYDRATIAQYGI 162
Query: 199 EDCMQNKMHPVYH 211
E + +MH +
Sbjct: 163 ELLIDGRMHSTVY 175
>gi|358378708|gb|EHK16389.1| hypothetical protein TRIVIDRAFT_75506 [Trichoderma virens Gv29-8]
Length = 257
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 9/183 (4%)
Query: 29 IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSCELNLV 87
ID +F P + M+ V + P +R L++AWP + + E+ + C +N+
Sbjct: 58 IDEEGRPRFAPAKDIDPMMRVETRKVPIPPHRMTPLKQAWPSIYPPIVEHLKLQCRMNIA 117
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNL---- 142
++ + T++ T D + K D ++ + AI +L D++ + +I ++
Sbjct: 118 RKTVELRTSKSTTDSGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTVH 177
Query: 143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM 202
++ R + R + G T A+E + I++ + + +G FK + R V +
Sbjct: 178 GDSQSRAIGR---IAGHQGKTKFAIENASRTRIVLADSKIHILGGFKNIHMARESVVSLI 234
Query: 203 QNK 205
K
Sbjct: 235 LGK 237
>gi|70991373|ref|XP_750535.1| rRNA processing protein (Rrp20) [Aspergillus fumigatus Af293]
gi|74671064|sp|Q4WNG7.1|PNO1_ASPFU RecName: Full=Pre-rRNA-processing protein pno1
gi|66848168|gb|EAL88497.1| rRNA processing protein (Rrp20), putative [Aspergillus fumigatus
Af293]
Length = 252
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 10/192 (5%)
Query: 10 NKKHKGKHDKPKPW------DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKY 63
+ + G+ + P P D ID F P + G +L V + P +R
Sbjct: 27 DAQASGQGEAPSPIPTESAQHSDMRIDEESRPVFTPITDAGTVLRVETRKVPVPPHRMTP 86
Query: 64 LQEAWPMVKGALKEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122
L+ WP + L E+ + +N+ ++ + T++ T D + K D ++ +
Sbjct: 87 LKANWPKIYPPLVEHLKLQVRMNIKNRAVELRTSKFTTDTGALQKGEDFVKAFTLGFDVD 146
Query: 123 QAIKILD-DEMQCDIIKIGNL--VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG 179
AI +L D++ +I ++ N E + + G + T A+E + +++QG
Sbjct: 147 DAIALLRLDDLYIRSFEIRDVKASLNGEHLSRAIGRIAGKDGKTKFAIENASRTRVVLQG 206
Query: 180 NTVAAMGSFKGL 191
V +G F+ L
Sbjct: 207 TKVTILGRFRDL 218
>gi|159124091|gb|EDP49209.1| rRNA processing protein (Rrp20), putative [Aspergillus fumigatus
A1163]
Length = 252
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 10/192 (5%)
Query: 10 NKKHKGKHDKPKPW------DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKY 63
+ + G+ + P P D ID F P + G +L V + P +R
Sbjct: 27 DAQASGQGEAPSPIPTESAQHSDMRIDEESRPVFTPIADAGTVLRVETRKVPVPPHRMTP 86
Query: 64 LQEAWPMVKGALKEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122
L+ WP + L E+ + +N+ ++ + T++ T D + K D ++ +
Sbjct: 87 LKANWPKIYPPLVEHLKLQVRMNIKNRAVELRTSKFTTDTGALQKGEDFVKAFTLGFDVD 146
Query: 123 QAIKILD-DEMQCDIIKIGNL--VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG 179
AI +L D++ +I ++ N E + + G + T A+E + +++QG
Sbjct: 147 DAIALLRLDDLYIRSFEIRDVKASLNGEHLSRAIGRIAGKDGKTKFAIENASRTRVVLQG 206
Query: 180 NTVAAMGSFKGL 191
V +G F+ L
Sbjct: 207 TKVTILGRFRDL 218
>gi|386003028|ref|YP_005921327.1| hypothetical protein Mhar_2354 [Methanosaeta harundinacea 6Ac]
gi|357211084|gb|AET65704.1| hypothetical protein Mhar_2354 [Methanosaeta harundinacea 6Ac]
Length = 177
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIKIGNLVRNKERFVKRRQHLVGP 159
DP + ++ +++R + R +A+ IL+DE+ D+I + K + + ++G
Sbjct: 48 DPIMAMRLAEVVRAIGRGFSPERALPILEDELLMLDVIDLSRAFNTKSDMARVKGRIIGK 107
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
+ T + E LTG I V G T+ +G+ ++ R +E + H +
Sbjct: 108 DGRTREIAEKLTGAGISVYGKTIGIIGNPDQIRVARTAIEMLIDGAPHGAVY 159
>gi|374723954|gb|EHR76034.1| putative RNA-processing protein [uncultured marine group II
euryarchaeote]
Length = 248
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV---RNKERFVKRRQHLV 157
DP +K D+I+ + R + AI++LDD+ +++ I + V N++R ++ R ++
Sbjct: 47 DPVKAMKFPDVIKAIGRGMAPKAAIRLLDDDHFFELVDIRSFVGKRSNQQRRIRAR--II 104
Query: 158 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
G K +E LT I + +TV +G +GL R+ VE H
Sbjct: 105 GSQGKIRKLIENLTDTQITIYNSTVVLVGEEEGLAAARQAVEMLAGGAEH 154
>gi|328352867|emb|CCA39265.1| Pre-rRNA-processing protein PNO1 [Komagataella pastoris CBS 7435]
Length = 364
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Query: 43 EGGM-LEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSCELNLVEGSMTVSTTRKTR 100
E GM +++ S P +R L+ AWP + L ++ + +NL ++ + T KT
Sbjct: 178 ESGMKVKLESRKVAVPPHRMGPLKTAWPKIYPPLVDHLHLQVRMNLRTKTVEMRTCAKTV 237
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNL-VRNKERFVKRRQHLVG 158
DP + K D ++ + AI +L D++ D +I ++ + + + + G
Sbjct: 238 DPGALQKGADFVKAFTLGFDIDDAIALLRLDDLYIDTFEIKDIKTLHGDHLSRAIGRIAG 297
Query: 159 PNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ T A+E T I++ + + +G F +K R+ V
Sbjct: 298 KDGRTKFAIENATRTRIVLADSKIHILGGFTHIKIARKAV 337
>gi|332797842|ref|YP_004459342.1| KH type 1 domain-containing protein [Acidianus hospitalis W1]
gi|332695577|gb|AEE95044.1| KH type 1 domain protein [Acidianus hospitalis W1]
Length = 177
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 99 TRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNKERFVKRRQHLV 157
+++PY +K +IR + +++K+L D+ D+I + V N E + + ++
Sbjct: 42 SQNPYDAMKVISVIRAIGLGFSVDESLKLLSDDYMLDVIDLKQSVGSNPETLRRIKGRII 101
Query: 158 GPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
G N K ++ TG I + + VA +G + ++ R+ +E ++ K H +
Sbjct: 102 GENGKAKKIIQEYTGVSISITDHFVAIIGIYDQVQIARKAIELLIEGKEHSTVY 155
>gi|448737732|ref|ZP_21719767.1| RNA-processing protein [Halococcus thailandensis JCM 13552]
gi|445803288|gb|EMA53586.1| RNA-processing protein [Halococcus thailandensis JCM 13552]
Length = 182
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Query: 56 FPQYREKYL-QEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRL 114
PQ R L E ++ GV +++ GS+ V + DP +K D++R
Sbjct: 6 IPQDRIGVLIGEGGATMRDIEDRAGVRLDIDSETGSVGVESVE---DPVQGLKGPDIVRA 62
Query: 115 LSRS-VPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC 173
+ R P + D+ M ++I I RN+ +++ L+G N T + + L+G
Sbjct: 63 IGRGFAPEDALTLLDDELMLLELIDIEAATRNETDLTRKKGRLIGENGRTRELMAELSGA 122
Query: 174 YILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ G+TV A+G+ + ++ VR VE + H
Sbjct: 123 SVVIYGSTVGAIGTPEEVEVVRNAVEMILDGAPH 156
>gi|242786400|ref|XP_002480797.1| rRNA processing protein (Rrp20), putative [Talaromyces stipitatus
ATCC 10500]
gi|218720944|gb|EED20363.1| rRNA processing protein (Rrp20), putative [Talaromyces stipitatus
ATCC 10500]
Length = 257
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 3/165 (1%)
Query: 37 FDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSCELNLVEGSMTVST 95
F P + G+ V P +R L+ WP + L E+ + +N+ ++ +
Sbjct: 66 FTPAKDTPGVYRVEQRKVPIPPHRMTPLKTYWPKIYPPLVEHLKLQVRMNVKSRTVELRN 125
Query: 96 TRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNL-VRNKERFVKRR 153
+R T DP + + D ++ + S AI +L D++ + +I ++ + + +
Sbjct: 126 SRLTTDPSALQRGADFVKAFALSFDVDDAIALLRLDDLYINSFEIKDVKTLSGDHLSRAI 185
Query: 154 QHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ G N T A+E T +++ G V +G+FK K + +
Sbjct: 186 GRIAGHNGKTKFAIENATRTRVVLAGQKVHILGTFKNAKMAQEAI 230
>gi|15899129|ref|NP_343734.1| RNA-processing protein [Sulfolobus solfataricus P2]
gi|284173756|ref|ZP_06387725.1| putative RNA-processing protein [Sulfolobus solfataricus 98/2]
gi|384432724|ref|YP_005642082.1| KH domain-containing protein [Sulfolobus solfataricus 98/2]
gi|13815678|gb|AAK42524.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261600878|gb|ACX90481.1| KH domain protein [Sulfolobus solfataricus 98/2]
Length = 189
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 156
K ++ Y +KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 45 KGQNQYETLKAVSVIRAIGLGFDEQSAFRLLSDEYTLDVIDLKALIGSNPDTIRRVKGRI 104
Query: 157 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
+G N T + ++ TG I + G+ + +G + ++ ++ +E + K H
Sbjct: 105 IGENGKTKRIIQEYTGVDISIYGHYIGVLGPYDQVQIAKKAIELLIDGKEHS 156
>gi|322697631|gb|EFY89409.1| hypothetical protein MAC_04595 [Metarhizium acridum CQMa 102]
Length = 258
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 81/185 (43%), Gaps = 3/185 (1%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D+ ID +F P + + V + P +R L++AWP + L E+ + C
Sbjct: 54 DDSMAIDEEGRPRFAPSRDIDPVTRVETRKIPVPPHRMTPLKQAWPSIYPPLVEHLKLQC 113
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D ++ + A+ +L D++ + +I +
Sbjct: 114 RMNIKRKTVELRTSQNTTDSGALQKGEDFVKAFTLGFDVDDAVALLRLDDLYIETFEIKD 173
Query: 142 L-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED 200
+ + + + + + G + T A+E + I++ + + +G FK + R V
Sbjct: 174 VRIMHGDSQARAIGRIAGKDGKTKFAIENASRTRIVLADSKIHILGGFKNIHMARESVVS 233
Query: 201 CMQNK 205
+ K
Sbjct: 234 LILGK 238
>gi|322711582|gb|EFZ03155.1| KH domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 258
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 81/185 (43%), Gaps = 3/185 (1%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D+ ID +F P + + V + P +R L++AWP + L E+ + C
Sbjct: 54 DDSMAIDEEGRPRFAPSRDIDPVTRVETRKIPVPPHRMTPLKQAWPSIYPPLVEHLKLQC 113
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D ++ + A+ +L D++ + +I +
Sbjct: 114 RMNIKRKTVELRTSQHTTDSGALQKGEDFVKAFTLGFDVDDAVALLRLDDLYIETFEIKD 173
Query: 142 L-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVED 200
+ + + + + + G + T A+E + I++ + + +G FK + R V
Sbjct: 174 VRIMHGDSQARAIGRIAGKDGKTKFAIENASRTRIVLADSKIHILGGFKNIHMARESVVS 233
Query: 201 CMQNK 205
+ K
Sbjct: 234 LILGK 238
>gi|16081522|ref|NP_393876.1| RNA-processing protein [Thermoplasma acidophilum DSM 1728]
gi|10639568|emb|CAC11540.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 189
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 108 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR-NKERFVKRRQHLVGPNSSTLKA 166
A+ +++ + R +A+ + +D MQ II + + R + + ++G T
Sbjct: 65 AKSVVQAIGRGFNPDKAMLLFEDGMQLVIISLREFAKPGSSRIAQIKARVIGTGGKTRTI 124
Query: 167 LEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 210
+E LTG +I V G+TV+ +G + + + + K H VY
Sbjct: 125 IEELTGSFISVYGDTVSIIGDYLAVTYAEEAINMIINGKKHRTVY 169
>gi|408406039|ref|YP_006864023.1| RNA-binding protein containing KH domain [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408366635|gb|AFU60365.1| putative RNA-binding protein containing KH domain [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 200
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL-DDEM-- 132
K GV E++ G T+S+T+ + +A ++I +SR +A ++ +DE+
Sbjct: 30 KRCGVEIEIDSESGDATISSTKPV-EQMEAFRAVEVISAISRGFSPERAYRLFENDEIMF 88
Query: 133 -QCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
Q D+ N +K R ++G + +E L+G YI V G+ V +G+FK +
Sbjct: 89 QQMDLHDYAGKSPNALERIKGR--IIGEGGKARRMIEELSGAYISVYGHMVGFIGNFKEV 146
Query: 192 KQVRRIVEDCMQNKMH-PVYHI 212
K + + MH VY++
Sbjct: 147 KLASDAITLLAKGSMHKSVYNM 168
>gi|340520552|gb|EGR50788.1| predicted protein [Trichoderma reesei QM6a]
Length = 257
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 9/183 (4%)
Query: 29 IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSCELNLV 87
ID +F P + M V + P +R L++AWP + + E+ + C +N+
Sbjct: 58 IDEEGRPRFAPSKDIDPMTRVETRKIPIPPHRMTPLKQAWPSIYPPIVEHLKLQCRMNIA 117
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNL---- 142
++ + T++ T D + K D ++ + AI +L D++ + +I ++
Sbjct: 118 RKTVELRTSKSTVDSGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIETFEIKDVKTVH 177
Query: 143 VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM 202
++ R + R + G T A+E + I++ + + +G FK + R V +
Sbjct: 178 GDSQSRAIGR---IAGHQGKTKFAIENASRTRIVLADSKIHILGGFKNIHMARESVVSLI 234
Query: 203 QNK 205
K
Sbjct: 235 LGK 237
>gi|336476185|ref|YP_004615326.1| KH domain-containing protein [Methanosalsum zhilinae DSM 4017]
gi|335929566|gb|AEH60107.1| KH domain protein [Methanosalsum zhilinae DSM 4017]
Length = 178
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC-DIIKIGNLVRNKERFVKRRQHLVGP 159
DP ++A D+I ++R + + + DDEM D I I ++ + + ++G
Sbjct: 49 DPVKAMRAADVIHAIARGFNPEKVLDMFDDEMLIFDFIDISQFAGTQKELKRLKGRIIGK 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMG 186
+ +E LTG I + G TV+ +G
Sbjct: 109 DGKARATIETLTGVKISIYGKTVSMIG 135
>gi|119719426|ref|YP_919921.1| putative RNA-processing protein [Thermofilum pendens Hrk 5]
gi|119524546|gb|ABL77918.1| KH, type 1, domain protein [Thermofilum pendens Hrk 5]
Length = 197
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 49/106 (46%)
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PY + +A+ + +S A+ + DD ++I + + + +E + + ++G
Sbjct: 64 PYNVFRAKKALEAISIGFTVDDALLLGDDAYDLEVIDLSEVSKRREDLSRIKARIIGTEG 123
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
K LE +TG I++ V +G F+ K V+ +E + + H
Sbjct: 124 RFKKTLEDMTGARIVIGEKAVGIIGDFEQNKVVKEALERLIAGQSH 169
>gi|407921850|gb|EKG14988.1| K-like protein [Macrophomina phaseolina MS6]
Length = 253
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 77/182 (42%), Gaps = 3/182 (1%)
Query: 20 PKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY- 78
P P +E ID +F P + + + + P +R L+ +WP + L E+
Sbjct: 45 PHPSEETMQIDTEGRPRFAPAKDIPLSMRIETRKVPIPPHRMTPLKASWPKIYPPLVEHL 104
Query: 79 GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDII 137
+ +N+ ++ + T++ T D + K D ++ S AI +L D++ +
Sbjct: 105 KLQVRMNIKNKAVELRTSKHTTDSGALQKGEDFVKAFSLGFDVDDAIALLRLDDLYIETF 164
Query: 138 KIGNL-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRR 196
+I ++ N + + + G + T A+E + I++ + +G FK + R
Sbjct: 165 EIKDVKTLNGDHLSRAIGRIAGKDGKTKFAIENASRTRIVLADQKIHILGGFKNIHVARE 224
Query: 197 IV 198
V
Sbjct: 225 AV 226
>gi|119185111|ref|XP_001243372.1| hypothetical protein CIMG_07268 [Coccidioides immitis RS]
gi|121931649|sp|Q1DQZ5.1|PNO1_COCIM RecName: Full=Pre-rRNA-processing protein PNO1
gi|392866252|gb|EAS28864.2| pre-rRNA-processing protein PNO1 [Coccidioides immitis RS]
Length = 255
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 75/178 (42%), Gaps = 3/178 (1%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D D ++D F P G + + P +R L+ AWP + L E+ +
Sbjct: 51 DTDMHVDEEGRPLFTPITATDGAYRIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQV 110
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D I+ + AI +L D++ + +I +
Sbjct: 111 RMNIKSKAVELRTSKNTTDTGALQKGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKD 170
Query: 142 L-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ N E + + G + T A+E + +++ + +G F+ ++ R +
Sbjct: 171 VKPLNGEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIRIAREAI 228
>gi|212543347|ref|XP_002151828.1| rRNA processing protein (Rrp20), putative [Talaromyces marneffei
ATCC 18224]
gi|210066735|gb|EEA20828.1| rRNA processing protein (Rrp20), putative [Talaromyces marneffei
ATCC 18224]
Length = 257
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 72/165 (43%), Gaps = 3/165 (1%)
Query: 37 FDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSCELNLVEGSMTVST 95
F P + G+ V P +R L+ WP + L E+ + +N+ ++ +
Sbjct: 66 FTPAKDTPGVYRVEQRKVPIPPHRMTPLKTYWPKIYPPLVEHLKLQVRMNVKSRTVELRN 125
Query: 96 TRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNL-VRNKERFVKRR 153
++ T DP + + D ++ + S AI +L D++ + +I ++ + + +
Sbjct: 126 SKLTNDPSALQRGADFVKAFALSFDVDDAIALLRLDDLYINSFEIKDVKTLSGDHLSRAI 185
Query: 154 QHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ G N T A+E T +++ G V +G+FK K + +
Sbjct: 186 GRIAGHNGKTKFAIENATRTRVVLAGQKVHILGTFKNAKMAQEAI 230
>gi|296242706|ref|YP_003650193.1| KH domain-containing protein [Thermosphaera aggregans DSM 11486]
gi|296095290|gb|ADG91241.1| KH domain protein [Thermosphaera aggregans DSM 11486]
Length = 213
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHLVGPNSST 163
++KARD+++ + +A+++L+++ +I + V +K V R ++G
Sbjct: 70 LMKARDIVKAIGYGFSPERAMRLLEEDQVLVVIDVRQYVGDKPNHVARVLGRIIGEEGKA 129
Query: 164 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
+ LE +TG +I + VA +G F+ + VE +Q + H +
Sbjct: 130 RRTLEEMTGTFISIYEPYVAIVGDFETANIAKTAVEMLIQGRRHSTVY 177
>gi|121709882|ref|XP_001272557.1| rRNA processing protein (Rrp20), putative [Aspergillus clavatus
NRRL 1]
gi|119400707|gb|EAW11131.1| rRNA processing protein (Rrp20), putative [Aspergillus clavatus
NRRL 1]
Length = 260
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D D ID F P + +L V + P +R L+ WP + L E+ +
Sbjct: 55 DMDMRIDEESRPVFTPIADSKTVLRVETRKVPVPPHRMTPLKANWPKIYPPLVEHLKLQV 114
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D ++ + AI +L D++ +I +
Sbjct: 115 RMNIKNRAVELRTSKFTTDTGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYIRSFEIRD 174
Query: 142 L--VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGL 191
+ N E + + G + T A+E + +++QG + +G FK L
Sbjct: 175 VKASLNGEHLSRAIGRIAGKDGKTKFAIENASRTRVVLQGTKITILGRFKDL 226
>gi|296805323|ref|XP_002843486.1| pre-rRNA-processing protein PNO1 [Arthroderma otae CBS 113480]
gi|238844788|gb|EEQ34450.1| pre-rRNA-processing protein PNO1 [Arthroderma otae CBS 113480]
Length = 254
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 77/185 (41%), Gaps = 6/185 (3%)
Query: 20 PKPWDEDPN---IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALK 76
P P D+ + ID +F P + G V + P +R L+ WP + L
Sbjct: 43 PPPQDQGDSEMAIDEEGRLRFTPIKSSGDAYRVETRKVPIPPHRLTPLKAEWPKIYPPLV 102
Query: 77 EY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQC 134
E+ + +N+ ++ + T++ T D + K D ++ + AI +L D++
Sbjct: 103 EHLKLQVRMNMKNRAVELRTSKHTTDTGALQKGEDFVKAFTLGFDVDDAIALLRLDDLYI 162
Query: 135 DIIKIGNL-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQ 193
+ +I ++ N E + + G + T A+E + +++ + +G F+ +
Sbjct: 163 ETFEIKDVKTLNGEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIHV 222
Query: 194 VRRIV 198
R +
Sbjct: 223 AREAI 227
>gi|435850456|ref|YP_007312042.1| KH domain protein [Methanomethylovorans hollandica DSM 15978]
gi|433661086|gb|AGB48512.1| KH domain protein [Methanomethylovorans hollandica DSM 15978]
Length = 175
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQ-CDIIKIGNLVRNKERFVKRRQHLVGP 159
DP ++A D+I+ ++R +A+ ++DDEM + I + N + ++ + ++G
Sbjct: 49 DPIQSMRAPDVIQAIARGFNPEKAMVLMDDEMMMLETIDLSNSAGTPQEMIRLKGRIIGK 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
T + +E + G I V G TV+ +G+ + + +R +E + H
Sbjct: 109 AGKTREIMESMIGVKISVYGKTVSVLGTPEQNQIIRTAIEMLIGGATH 156
>gi|261350190|ref|ZP_05975607.1| KH domain-containing protein [Methanobrevibacter smithii DSM 2374]
gi|288860976|gb|EFC93274.1| KH domain-containing protein [Methanobrevibacter smithii DSM 2374]
Length = 206
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/121 (17%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNK 146
+G++ ++ DP + A +++ ++R A+K++DD++ ++IK+ + ++K
Sbjct: 42 DGTVYITPQENMSDPLGVWNANHIVKAIARGFNPEVALKLVDDDIYLEVIKLPLYIGKSK 101
Query: 147 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
+ + ++G N T + + + + + G TV+ +G + + +E ++
Sbjct: 102 NALSRYKGRIIGQNGKTREIIMDMAEVQMAIYGKTVSLIGEMDNIMIAKEAIEMILKGSR 161
Query: 207 H 207
H
Sbjct: 162 H 162
>gi|440292397|gb|ELP85602.1| pre-rRNA-processing protein PNO1, putative [Entamoeba invadens IP1]
Length = 197
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 53 STLFPQYREKYLQEAWPMV-KGALKEYGVSCELNLVEGSMTVSTTRKTRDPYI--IVKAR 109
S P +R KY + WP + + +K+ ++ +N + V + D I + K
Sbjct: 23 SVRVPPFRFKYFKNNWPAIYEPIVKQMKLNIRMN---PNAHVIQLKTNPDSCIDAVQKTC 79
Query: 110 DLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK-AL 167
D I +S+ A AI +L DE+ D +I N+ R + +KR + +K ++
Sbjct: 80 DFIEAISKGFEAKDAIALLKMDEVCVDSFEIDNVKRLQGDHLKRAMGRIAGKDGKIKFSI 139
Query: 168 EILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCM 202
E T I++ G ++ MGS +K R ++D +
Sbjct: 140 ENATHTRIIMMGQKISVMGSQANVKFARDAIQDLI 174
>gi|315045604|ref|XP_003172177.1| pre-rRNA-processing protein PNO1 [Arthroderma gypseum CBS 118893]
gi|311342563|gb|EFR01766.1| pre-rRNA-processing protein PNO1 [Arthroderma gypseum CBS 118893]
Length = 256
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/178 (18%), Positives = 74/178 (41%), Gaps = 3/178 (1%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D + +D +F P + G V + P +R L+ WP + L E+ +
Sbjct: 52 DNEMAVDEEGRLRFTPIKSSGDAYRVETRKVPIPPHRLTPLKAEWPKIYPPLVEHLKLQV 111
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D ++ + AI +L D++ + +I +
Sbjct: 112 RMNMKNRAVELRTSKHTTDTGALQKGEDFVKAFTLGFDTDDAIALLRLDDLYIETFEIKD 171
Query: 142 L-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ N E + + G + T A+E + +++ + +G F+ + R +
Sbjct: 172 VKTLNGEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIHVAREAI 229
>gi|303313736|ref|XP_003066877.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240106544|gb|EER24732.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320032574|gb|EFW14526.1| pre-rRNA-processing protein PNO1 [Coccidioides posadasii str.
Silveira]
Length = 255
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 75/178 (42%), Gaps = 3/178 (1%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D + ++D F P G + + P +R L+ AWP + L E+ +
Sbjct: 51 DTEMHVDEEGRPLFTPIKATDGAYRIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQV 110
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D I+ + AI +L D++ + +I +
Sbjct: 111 RMNIKSKAVELRTSKHTTDTGALQKGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKD 170
Query: 142 L-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ N E + + G + T A+E + +++ + +G F+ ++ R +
Sbjct: 171 VKTLNGEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIRIAREAI 228
>gi|327304501|ref|XP_003236942.1| pre-rRNA-processing protein PNO1 [Trichophyton rubrum CBS 118892]
gi|326459940|gb|EGD85393.1| pre-rRNA-processing protein PNO1 [Trichophyton rubrum CBS 118892]
Length = 254
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/178 (18%), Positives = 73/178 (41%), Gaps = 3/178 (1%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D + +D +F P G V + P +R L+ WP + L E+ +
Sbjct: 50 DSEMAVDEEGRLRFTPIKASGNAYRVETRKVPIPPHRLTPLKAEWPKIYPPLVEHLKLQV 109
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D ++ + AI +L D++ + +I +
Sbjct: 110 RMNMKNRAVELRTSKHTTDTGALQKGEDFVKAFTLGFDTDDAIALLRLDDLYIETFEIKD 169
Query: 142 L-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ N E + + G + T A+E + +++ + +G F+ + R +
Sbjct: 170 VKTLNGEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIHVAREAI 227
>gi|148643014|ref|YP_001273527.1| putative RNA-processing protein [Methanobrevibacter smithii ATCC
35061]
gi|222445251|ref|ZP_03607766.1| hypothetical protein METSMIALI_00879 [Methanobrevibacter smithii
DSM 2375]
gi|148552031|gb|ABQ87159.1| predicted RNA-binding protein [Methanobrevibacter smithii ATCC
35061]
gi|222434816|gb|EEE41981.1| arCOG04150 universal archaeal KH domain protein [Methanobrevibacter
smithii DSM 2375]
Length = 206
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/121 (17%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV-RNK 146
+G++ ++ DP + A +++ ++R A+K++DD++ ++IK+ + ++K
Sbjct: 42 DGTVYITPQENMSDPLGVWNANHIVKAVARGFNPEVALKLVDDDIYLEVIKLPLYIGKSK 101
Query: 147 ERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKM 206
+ + ++G N T + + + + + G TV+ +G + + +E ++
Sbjct: 102 NALSRYKGRIIGQNGKTREIIMDMAEVQMAIYGKTVSLIGEMDNIMIAKEAIEMILKGSR 161
Query: 207 H 207
H
Sbjct: 162 H 162
>gi|326484950|gb|EGE08960.1| pre-rRNA-processing protein PNO1 [Trichophyton equinum CBS 127.97]
Length = 254
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 71/173 (41%), Gaps = 3/173 (1%)
Query: 29 IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSCELNLV 87
+D +F P G V + P +R L+ WP + L E+ + +N+
Sbjct: 55 VDEEGRPRFTPIKASGNAYRVETRKVPIPPHRLTPLKAEWPKIYPPLVEHLKLQVRMNMK 114
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNL-VRN 145
++ + T++ T D + K D ++ + AI +L D++ + +I ++ N
Sbjct: 115 NRAVELRTSKHTTDTGALQKGEDFVKAFTLGFDTDDAIALLRLDDLYIETFEIKDVKTLN 174
Query: 146 KERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
E + + G + T A+E + +++ + +G F+ + R +
Sbjct: 175 GEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIHVAREAI 227
>gi|229577991|ref|YP_002836389.1| RNA-processing protein [Sulfolobus islandicus Y.G.57.14]
gi|284996577|ref|YP_003418344.1| KH, type 1, domain-containing protein [Sulfolobus islandicus
L.D.8.5]
gi|385772196|ref|YP_005644762.1| KH type 1 domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|228008705|gb|ACP44467.1| KH type 1 domain protein [Sulfolobus islandicus Y.G.57.14]
gi|284444472|gb|ADB85974.1| KH, type 1, domain protein [Sulfolobus islandicus L.D.8.5]
gi|323476310|gb|ADX81548.1| KH type 1 domain protein [Sulfolobus islandicus HVE10/4]
Length = 186
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 156
K ++ Y +KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 42 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 101
Query: 157 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
+G + ++ TG I + G+ + +G + ++ R+ +E + K H
Sbjct: 102 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYDQVQIARKAIELLIDGKEHS 153
>gi|145592052|ref|YP_001154054.1| RNA-processing protein [Pyrobaculum arsenaticum DSM 13514]
gi|145283820|gb|ABP51402.1| KH, type 1, domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 184
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 5/157 (3%)
Query: 53 STLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYI--IVKARD 110
TLF K L+ A VK A YG+ EL+ E + + T D + I+K R+
Sbjct: 18 GTLFQPIDPKRLRAAREFVKMADGRYGIRVELD--EKELYIKLTPGP-DAAVDAILKVRE 74
Query: 111 LIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEIL 170
+ + ++ QA+ + DE +I + + + + ++G + K +E L
Sbjct: 75 MAKAVALGFAPDQAMALESDEYVLTVIDLKEVTDKPNHLRRIKGRIIGEDGRAKKTIENL 134
Query: 171 TGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+++ VA +G + ++ RR VE ++ K H
Sbjct: 135 AQVAMVIGDTYVAILGKLEDVEIARRAVEMLIEGKKH 171
>gi|294495346|ref|YP_003541839.1| KH domain protein [Methanohalophilus mahii DSM 5219]
gi|292666345|gb|ADE36194.1| KH domain protein [Methanohalophilus mahii DSM 5219]
Length = 178
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 101 DPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIKIGNLVRNKERFVKRRQHLVGP 159
DP ++A + I+ + R + I +LDD++ ++I + + + + ++G
Sbjct: 49 DPVGTLRAIETIKAIGRGFNPEKTIPMLDDDLLMLEVIDLSKYASTNKEMTRLKGRIIGK 108
Query: 160 NSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 210
T + E L G I + G TV+ +G + ++ +R VE ++ H PVY
Sbjct: 109 GGKTREIAENLIGVKISIYGKTVSFIGYPEQIQIMRTAVEMLIEGANHGPVY 160
>gi|302501482|ref|XP_003012733.1| hypothetical protein ARB_00984 [Arthroderma benhamiae CBS 112371]
gi|302660907|ref|XP_003022127.1| hypothetical protein TRV_03730 [Trichophyton verrucosum HKI 0517]
gi|291176293|gb|EFE32093.1| hypothetical protein ARB_00984 [Arthroderma benhamiae CBS 112371]
gi|291186058|gb|EFE41509.1| hypothetical protein TRV_03730 [Trichophyton verrucosum HKI 0517]
Length = 254
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/178 (18%), Positives = 73/178 (41%), Gaps = 3/178 (1%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D + +D +F P G V + P +R L+ WP + L E+ +
Sbjct: 50 DSEMAVDEEGRLRFTPIKASGNAYRVETRKVPIPPHRLTPLKAEWPKIYPPLVEHLKLQV 109
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D ++ + AI +L D++ + +I +
Sbjct: 110 RMNMKNRAVELRTSKHTTDTGALQKGEDFVKAFTLGFDTDDAIALLRLDDLYIETFEIKD 169
Query: 142 L-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ N E + + G + T A+E + +++ + +G F+ + R +
Sbjct: 170 VKTLNGEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIHVAREAI 227
>gi|150401024|ref|YP_001324790.1| RNA-processing protein [Methanococcus aeolicus Nankai-3]
gi|150013727|gb|ABR56178.1| KH type 1 domain protein [Methanococcus aeolicus Nankai-3]
Length = 186
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 61/121 (50%)
Query: 88 EGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKE 147
+G +T+ +T++ DP KARD+I+ + R +++K++ D+ +II I +
Sbjct: 44 DGEITIFSTKEQEDPLATWKARDIIKAIGRGFNPEKSLKLISDDYIIEIIDITEHASSDN 103
Query: 148 RFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+ + ++G + + +E LT + V G T+A +G ++ ++ + + ++ H
Sbjct: 104 AVKRLKGRVIGSGGKSRRYIEELTDTDVSVYGKTIAVLGDYESVQIAKEAINMILRGNSH 163
Query: 208 P 208
Sbjct: 164 S 164
>gi|14325440|dbj|BAB60344.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 182
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 108 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR-NKERFVKRRQHLVGPNSSTLKA 166
A+++++ + R +A+ + ++ MQ II + + + + + ++G T
Sbjct: 58 AKNVVQAIGRGFNPGKAMLLFEENMQLVIISLREFAKPGSSKITQIKARVIGTGGKTRAI 117
Query: 167 LEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 210
+E LTG Y+ V G+T++ +G + + + + K H VY
Sbjct: 118 IEELTGSYLSVYGDTISIIGDYLAVTYAEEAINMIINGKKHRTVY 162
>gi|238618666|ref|YP_002913491.1| RNA-processing protein [Sulfolobus islandicus M.16.4]
gi|385774911|ref|YP_005647479.1| KH type 1 domain-containing protein [Sulfolobus islandicus REY15A]
gi|238379735|gb|ACR40823.1| KH type 1 domain protein [Sulfolobus islandicus M.16.4]
gi|323473659|gb|ADX84265.1| KH type 1 domain protein [Sulfolobus islandicus REY15A]
Length = 189
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 156
K ++ Y +KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 45 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 104
Query: 157 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
+G + ++ TG I + G+ + +G + ++ R+ +E + K H
Sbjct: 105 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYDQVQIARKAIELLIDGKEHS 156
>gi|227826580|ref|YP_002828359.1| RNA-processing protein [Sulfolobus islandicus M.14.25]
gi|229583744|ref|YP_002842245.1| RNA-processing protein [Sulfolobus islandicus M.16.27]
gi|227458375|gb|ACP37061.1| KH type 1 domain protein [Sulfolobus islandicus M.14.25]
gi|228018793|gb|ACP54200.1| KH type 1 domain protein [Sulfolobus islandicus M.16.27]
Length = 186
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 156
K ++ Y KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 42 KGQNQYEAFKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 101
Query: 157 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
+G + ++ TG I + G+ + +G + ++ R+ +E + K H
Sbjct: 102 IGEGGKAKRIIQEYTGVDISIYGHHIGIIGPYDQVQIARKAIELLIDGKEHS 153
>gi|440634805|gb|ELR04724.1| RNA-binding protein PNO1 [Geomyces destructans 20631-21]
Length = 252
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 76/180 (42%), Gaps = 3/180 (1%)
Query: 22 PWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GV 80
P ++ ID F P N G + + S P +R L+ WP + L E+ +
Sbjct: 46 PARDEMTIDEEGRPHFAPAQNSDGPVRIDSRKVPIPPHRMSPLKNEWPKIYPPLVEHLKL 105
Query: 81 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKI 139
+N+ ++ + T++ T D + K D ++ + AI +L D++ + +I
Sbjct: 106 QVRMNVPRKAVELRTSKFTTDTGALQKGEDFVKAFTLGFDTDDAIALLRLDDLYIETFEI 165
Query: 140 GNL-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
++ E + + G + T A+E + +++ + + +G FK ++ R +
Sbjct: 166 KDVKTLQGEHLGRAIGRIAGKDGKTKFAIENASKTRVVLADSKIHILGGFKNIRIAREAI 225
>gi|258564628|ref|XP_002583059.1| hypothetical protein UREG_07832 [Uncinocarpus reesii 1704]
gi|237908566|gb|EEP82967.1| hypothetical protein UREG_07832 [Uncinocarpus reesii 1704]
Length = 248
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 74/178 (41%), Gaps = 3/178 (1%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D + ID F P G + + P +R L+ AWP + L E+ +
Sbjct: 51 DTEMRIDEEGRPLFTPIRATDGSYRIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQV 110
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D I+ + AI +L D++ + +I +
Sbjct: 111 RMNIKNKAIELRTSKHTTDVGALQKGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKD 170
Query: 142 L-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ N E + + G + T A+E + +++ + +G F+ ++ R +
Sbjct: 171 VKTLNGEHLGRAVGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIRIAREAI 228
>gi|229583203|ref|YP_002841602.1| putative RNA-processing protein [Sulfolobus islandicus Y.N.15.51]
gi|228013919|gb|ACP49680.1| KH type 1 domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 189
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 156
K ++ Y +KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 45 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 104
Query: 157 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
+G + ++ TG I + G+ + +G + ++ R+ +E + K H
Sbjct: 105 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYDQVQIARKAIELLIDGKEHS 156
>gi|227829222|ref|YP_002831001.1| RNA-processing protein [Sulfolobus islandicus L.S.2.15]
gi|227455669|gb|ACP34356.1| KH type 1 domain protein [Sulfolobus islandicus L.S.2.15]
Length = 189
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 98 KTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR-RQHL 156
K ++ Y +KA +IR + A ++L DE D+I + L+ + ++R + +
Sbjct: 45 KGQNQYEALKAVSVIRAIGLGFDEQSAFRLLSDEYILDVIDLKTLIGSNPDAIRRVKGRI 104
Query: 157 VGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHP 208
+G + ++ TG I + G+ + +G + ++ R+ +E + K H
Sbjct: 105 IGEGGKAKRIIQEYTGVDISIYGHYIGIIGPYDQVQIARKAIELLIDGKEHS 156
>gi|119872284|ref|YP_930291.1| RNA-processing protein [Pyrobaculum islandicum DSM 4184]
gi|119673692|gb|ABL87948.1| conserved hypothetical protein [Pyrobaculum islandicum DSM 4184]
Length = 176
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 50/103 (48%)
Query: 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTL 164
++K R++I+ ++ QA+++ +DE +I + + + ++G
Sbjct: 59 VLKLREMIKAIALGFTPEQALELENDEYTLVVIDLKEYTDKPNHLRRIKGRIIGEEGRAR 118
Query: 165 KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH 207
+ +E L +++V N VA +G + ++ RR VE ++ K H
Sbjct: 119 RTIEYLAEVHMVVGDNYVAILGKMEDVEIARRAVEMLIEGKKH 161
>gi|13542007|ref|NP_111695.1| RNA-processing protein [Thermoplasma volcanium GSS1]
Length = 193
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 108 ARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR-NKERFVKRRQHLVGPNSSTLKA 166
A+++++ + R +A+ + ++ MQ II + + + + + ++G T
Sbjct: 69 AKNVVQAIGRGFNPGKAMLLFEENMQLVIISLREFAKPGSSKITQIKARVIGTGGKTRAI 128
Query: 167 LEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMH-PVY 210
+E LTG Y+ V G+T++ +G + + + + K H VY
Sbjct: 129 IEELTGSYLSVYGDTISIIGDYLAVTYAEEAINMIINGKKHRTVY 173
>gi|385805861|ref|YP_005842259.1| KH, type 1, domain-containing protein [Fervidicoccus fontis Kam940]
gi|383795724|gb|AFH42807.1| KH, type 1, domain protein [Fervidicoccus fontis Kam940]
Length = 206
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 51/107 (47%)
Query: 105 IVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTL 164
I+KA+++IR ++ +A ++LD++ +I + + + + + ++G T
Sbjct: 69 IIKAKEIIRAIAIGFTPEEAFRLLDEDQILIVINLKEINEDPNGIKRIKSRIIGEEGRTR 128
Query: 165 KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
K +E TG +++ + + +G F+ R + + K H V +
Sbjct: 129 KIIEETTGSKVVIGESAIGIIGDFEQASIAERAIRMLIDGKPHSVVY 175
>gi|240273185|gb|EER36707.1| pre-rRNA-processing protein PNO1 [Ajellomyces capsulatus H143]
gi|325089211|gb|EGC42521.1| pre-rRNA-processing protein PNO1 [Ajellomyces capsulatus H88]
Length = 264
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 75/189 (39%), Gaps = 3/189 (1%)
Query: 13 HKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVK 72
H H + D + ID F P + G V + P +R L+ WP +
Sbjct: 49 HSKHHPEQNQEDTEMQIDLEGRPVFTPAASSEGAYRVETRKVPVPPHRMTPLKATWPKIY 108
Query: 73 GALKEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-D 130
L E+ + +N+ S+ + T++ T D + K D ++ + AI +L D
Sbjct: 109 PPLVEHLKLQVRMNIKNRSVELRTSKHTTDAGALQKGEDFVKAFTLGFDVDDAIALLRLD 168
Query: 131 EMQCDIIKIGNL-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFK 189
++ + +I ++ E + + G + T A+E + +++ + +G F+
Sbjct: 169 DLYIETFEIKDVKTLGGEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFR 228
Query: 190 GLKQVRRIV 198
+ R +
Sbjct: 229 NIHVAREAI 237
>gi|383320176|ref|YP_005381017.1| KH domain-containing protein [Methanocella conradii HZ254]
gi|379321546|gb|AFD00499.1| universal archaeal KH domain protein [Methanocella conradii HZ254]
Length = 180
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 56 FPQYREKYLQEAWPMVKGALKE-YGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRL 114
PQ R + VK A++E G + +++ G + V + D ++A ++I+
Sbjct: 7 VPQDRIGAIIGVEGNVKKAIEEKTGATLDVDSESGIVVVQSEA---DALKALRAAEVIKA 63
Query: 115 LSRSVPAPQAIKILDDE-MQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGC 173
++R +A+++LD+E + DI+ + L + + + ++G T + +E +TG
Sbjct: 64 IARGFSPEKALRLLDNEDLILDIMDLSVLSDSPADLKRIKGRIIGKGGKTREVIEQMTGA 123
Query: 174 YILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
+ V G T++ +G + L VR ++ + H +
Sbjct: 124 RLSVYGKTISIIGDAEQLATVRAALDMLIDGAPHGAVY 161
>gi|320583541|gb|EFW97754.1| putative RNA-binding protein Pno1p [Ogataea parapolymorpha DL-1]
Length = 253
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Query: 56 FPQYREKYLQEAWPMVKGALKEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRL 114
P +R L+ AWP + L ++ + +NL ++ + T KT DP + K D I+
Sbjct: 81 VPPHRMSPLKNAWPKIYPPLVDHLKLQVRMNLKTKNVELRTCSKTTDPGALQKGADFIKA 140
Query: 115 LSRSVPAPQAIKILD-DEMQCDIIKIGNL-VRNKERFVKRRQHLVGPNSSTLKALEILTG 172
+ AI +L D++ + +I ++ + + + G + T A+E T
Sbjct: 141 FTLGFDIDDAIALLRLDDLYIESFEIKDVKTLQGDHLSRAIGRIAGKDGKTKFAIENATR 200
Query: 173 CYILVQGNTVAAMGSFKGLKQVRRIV 198
I++ + + +G F ++ R V
Sbjct: 201 TRIVLADSKIHILGGFTHIRMAREAV 226
>gi|190346710|gb|EDK38862.2| hypothetical protein PGUG_02960 [Meyerozyma guilliermondii ATCC
6260]
Length = 253
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 3/166 (1%)
Query: 36 KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSCELNLVEGSMTVS 94
KF G +++ S P +R L+ WP + L E+ + +NL ++ +
Sbjct: 61 KFAAATKVGMKVKLESRKVQVPPHRMSPLKNTWPKIYPPLVEHLKLQVRMNLKTKTVELK 120
Query: 95 TTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNL-VRNKERFVKR 152
T + T DP + K D ++ + AI +L D++ + ++ ++ + +
Sbjct: 121 TNKTTTDPGALQKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEVKDVKTLTGDHLSRA 180
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ G + T A+E T I++ + + +G F ++ R V
Sbjct: 181 IGRIAGKDGRTKFAIENATRTRIVLADSKIHILGGFTHIRMAREAV 226
>gi|146418531|ref|XP_001485231.1| hypothetical protein PGUG_02960 [Meyerozyma guilliermondii ATCC
6260]
Length = 253
Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 3/166 (1%)
Query: 36 KFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSCELNLVEGSMTVS 94
KF G +++ S P +R L+ WP + L E+ + +NL ++ +
Sbjct: 61 KFAAATKVGMKVKLESRKVQVPPHRMSPLKNTWPKIYPPLVEHLKLQVRMNLKTKTVELK 120
Query: 95 TTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGNL-VRNKERFVKR 152
T + T DP + K D ++ + AI +L D++ + ++ ++ + +
Sbjct: 121 TNKTTTDPGALQKGADFVKAFTLGFDVDDAIALLRLDDLYIETFEVKDVKTLTGDHLSRA 180
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ G + T A+E T I++ + + +G F ++ R V
Sbjct: 181 IGRIAGKDGRTKFAIENATRTRIVLADSKIHILGGFTHIRMAREAV 226
>gi|21228114|ref|NP_634036.1| RNA-processing protein [Methanosarcina mazei Go1]
gi|452210580|ref|YP_007490694.1| RNA-binding protein [Methanosarcina mazei Tuc01]
gi|20906556|gb|AAM31708.1| putative RNA-binding protein [Methanosarcina mazei Go1]
gi|452100482|gb|AGF97422.1| RNA-binding protein [Methanosarcina mazei Tuc01]
Length = 182
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 81 SCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEM-QCDIIKI 139
+C+L + S + T + DP + + I+ + R +A++ILDDEM ++I +
Sbjct: 31 TCQLEIESDSGKIDVTCEG-DPLKEFRVLETIKAIGRGFSPEKALEILDDEMLMLEVIDL 89
Query: 140 GNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
++ + + + ++G N T + E L I V G TV+ +G
Sbjct: 90 SDVATTPKELQRIKGRIIGRNGRTRELAESLINVKISVYGKTVSVLG 136
>gi|379003241|ref|YP_005258913.1| universal KH domain protein [Pyrobaculum oguniense TE7]
gi|375158694|gb|AFA38306.1| universal archaeal KH domain protein [Pyrobaculum oguniense TE7]
Length = 169
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 5/161 (3%)
Query: 53 STLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYI--IVKARD 110
TL K L+ A VK A YG+ EL+ E + + T D + I+K R+
Sbjct: 3 GTLLQPIDPKRLRAAREFVKMADGRYGIRVELD--EKELYIKLTPGP-DAAVDAILKVRE 59
Query: 111 LIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEIL 170
+ + ++ QA+ + DE +I + + + + ++G + K +E L
Sbjct: 60 MAKAVALGFAPDQAMALESDEYVLTVIDLKEVTDKPNHLRRIKGRIIGEDGRAKKTIENL 119
Query: 171 TGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYH 211
+++ VA +G + ++ RR VE ++ K H +
Sbjct: 120 AQVAMVIGDTYVAILGKLEDVEIARRAVEMLIEGKKHGTVY 160
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,034,662,449
Number of Sequences: 23463169
Number of extensions: 261424252
Number of successful extensions: 1309466
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 6153
Number of HSP's that attempted gapping in prelim test: 1210584
Number of HSP's gapped (non-prelim): 52453
length of query: 376
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 232
effective length of database: 8,980,499,031
effective search space: 2083475775192
effective search space used: 2083475775192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 78 (34.7 bits)