BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017154
(376 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74777|KRR1_SCHPO KRR1 small subunit processome component homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mis3 PE=3 SV=1
Length = 327
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/314 (63%), Positives = 247/314 (78%), Gaps = 5/314 (1%)
Query: 9 VNKKHKGKHDKPKPWDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAW 68
VNK + + DKP WD D +IDHWK+E F ++ LE SSF+TLFP+YREKYL+E W
Sbjct: 14 VNKNKRYRRDKP--WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVW 70
Query: 69 PMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKIL 128
P V AL ++G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KI+
Sbjct: 71 PHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIM 130
Query: 129 DDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSF 188
D + CDIIKIGN++RNKERFVKRRQ L+G N TLKALE+LT CYILVQG TVA MG +
Sbjct: 131 QDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGY 190
Query: 189 KGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKK 248
KGLK+VRRIVEDCM N +HP+YHIK LM+K+EL KDP LANE+WDRFLP+FKK+NV ++K
Sbjct: 191 KGLKEVRRIVEDCMHN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRK 249
Query: 249 -VKSKEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRK 307
K +E K YTPFPP PSK+D +ESGEYFL + +KE KK EK+E+Q EK E +++
Sbjct: 250 PAKIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309
Query: 308 RDAAFIPPEEPSRQ 321
R AFIPPEE S++
Sbjct: 310 RMKAFIPPEESSKK 323
>sp|E7QBZ1|KRR1_YEASZ KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain Zymaflore VL3) GN=KRR1 PE=3 SV=1
Length = 316
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
FI PEE
Sbjct: 303 FIAPEE 308
>sp|E7LRT8|KRR1_YEASV KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain VIN 13) GN=KRR1 PE=3 SV=1
Length = 316
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
FI PEE
Sbjct: 303 FIAPEE 308
>sp|P25586|KRR1_YEAST KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=KRR1 PE=1 SV=1
Length = 316
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
FI PEE
Sbjct: 303 FIAPEE 308
>sp|C8Z430|KRR1_YEAS8 KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=KRR1 PE=3
SV=1
Length = 316
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
FI PEE
Sbjct: 303 FIAPEE 308
>sp|B5VEQ2|KRR1_YEAS6 KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain AWRI1631) GN=KRR1 PE=3 SV=1
Length = 316
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
FI PEE
Sbjct: 303 FIAPEE 308
>sp|B3LU25|KRR1_YEAS1 KRR1 small subunit processome component OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=KRR1 PE=3 SV=1
Length = 316
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/306 (63%), Positives = 237/306 (77%), Gaps = 7/306 (2%)
Query: 17 HDKPKPWDEDPNIDHWKVEKFDPFWNEGG--MLEVSSFSTLFPQYREKYLQEAWPMVKGA 74
H++ KPWD D +ID WK+E+F N G E SSF TLFP+YRE YL+ W V A
Sbjct: 5 HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 63
Query: 75 LKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQC 134
L ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M C
Sbjct: 64 LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 123
Query: 135 DIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQV 194
D+IKIGN V NKERFVKRRQ LVGPN +TLKALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 124 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 183
Query: 195 RRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNV---KQKKVKS 251
RR+VEDCM+N +HP+YHIK LM+K+EL K P LANE+W RFLP FKK+NV K KK+++
Sbjct: 184 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 242
Query: 252 KEKKPYTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAA 311
EKK YTPFPP P K+D +ESGEYFLS+R+K+ KK E++EKQ E+ E + +R
Sbjct: 243 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 302
Query: 312 FIPPEE 317
FI PEE
Sbjct: 303 FIAPEE 308
>sp|B4N0P7|KRR1_DROWI KRR1 small subunit processome component homolog OS=Drosophila
willistoni GN=dbe PE=3 SV=1
Length = 347
Score = 348 bits (893), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 177/308 (57%), Positives = 232/308 (75%), Gaps = 6/308 (1%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
DP + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ A+ E+ + E
Sbjct: 15 DPVDNAWSLKIPAFKETDNPHGMIEESSFATLFPKYREKYLKEVWPLVEQAVGEHHLKAE 74
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+LVEGSM V TTRKT DPYII+KARD+I+L++RSVP QA ++L DE+ CDIIKIGNLV
Sbjct: 75 LDLVEGSMVVKTTRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDEIGCDIIKIGNLV 134
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
+ KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M
Sbjct: 135 QKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMN 194
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFP 261
N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPFP
Sbjct: 195 N-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNLSKRKQPKVKKPKKEYTPFP 253
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPP-EEPSR 320
P SKIDK L SGEYFL++ +K++K+ QE+Q KQAE + +R+ FIPP EEP
Sbjct: 254 PAQPESKIDKQLASGEYFLNKEQKQAKRQQERQTKQAEAAKKQDERRNKDFIPPTEEPPT 313
Query: 321 QNSCEAED 328
+ +A D
Sbjct: 314 GSKRKAND 321
>sp|Q13601|KRR1_HUMAN KRR1 small subunit processome component homolog OS=Homo sapiens
GN=KRR1 PE=1 SV=4
Length = 381
Score = 348 bits (893), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 181/333 (54%), Positives = 244/333 (73%), Gaps = 9/333 (2%)
Query: 12 KHKGKHDKPKPWDEDPN-----IDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQE 66
K + ++ KPKP ++D + D WK F N G+LE SSF+TLFP+YRE YL+E
Sbjct: 15 KSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKE 74
Query: 67 AWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIK 126
WP+V+ AL E+ V+ L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV QA++
Sbjct: 75 CWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVR 134
Query: 127 ILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMG 186
IL D++ CDIIKIG+LVRNKERFVKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G
Sbjct: 135 ILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIG 194
Query: 187 SFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQ 246
F GLK+VR++V D M+N +HP+Y+IK LM+K+EL KD L +++W+RFLP+FK KNV +
Sbjct: 195 PFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNK 253
Query: 247 KKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAEN 304
+K K+ YTPFPPP S+IDK L SGEYFL +K+ +K + + KQAE ++
Sbjct: 254 RKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKR 313
Query: 305 KRKRDAAFIPPEEPSRQNSCEAEDKTN-DVAAM 336
+ +R+ AFIPP+E EA +T DVA++
Sbjct: 314 QEERNKAFIPPKEKPIVKPKEASTETKIDVASI 346
>sp|Q8BGA5|KRR1_MOUSE KRR1 small subunit processome component homolog OS=Mus musculus
GN=Krr1 PE=2 SV=1
Length = 380
Score = 347 bits (891), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 175/310 (56%), Positives = 230/310 (74%), Gaps = 4/310 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V L+L+EG
Sbjct: 37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEG 96
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QA++IL D++ CDIIKIG+LVRNKERF
Sbjct: 97 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERF 156
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CY++VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 157 VKRRQRLIGPKGSTLKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 215
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 216 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPES 275
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAE 327
+IDK L SGEYFL +K+ +K + + KQAE + + +R+ AFIPP+E EA
Sbjct: 276 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEAS 335
Query: 328 DKTN-DVAAM 336
+T DVAA+
Sbjct: 336 TETKIDVAAI 345
>sp|B4JDU5|KRR1_DROGR KRR1 small subunit processome component homolog OS=Drosophila
grimshawi GN=dbe PE=3 SV=1
Length = 341
Score = 347 bits (889), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 171/299 (57%), Positives = 226/299 (75%), Gaps = 7/299 (2%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
+P + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ + E+ + E
Sbjct: 15 EPVDNAWSLKIPTFKAEDNPHGMVEESSFATLFPKYREKYLKEVWPLVQQTVAEHHLRAE 74
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L DE CDIIKIGNLV
Sbjct: 75 LDLIEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDETGCDIIKIGNLV 134
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTVAA+G +KGL+QVR IV + M
Sbjct: 135 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYKGLQQVRDIVLETMN 194
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP---YTPF 260
N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K + K +KP YTPF
Sbjct: 195 N-VHPIYNIKALMIKRELMKDPQLANEDWSRFLPKFKNKNISKRK-QPKSRKPKGEYTPF 252
Query: 261 PPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPS 319
PP SKIDK L SGEYFL++ +K++K+ QE+ KQAE + +R+ F+PP E S
Sbjct: 253 PPAQPESKIDKQLASGEYFLNKEQKQAKRQQERVAKQAEAAKKQDERRNKDFMPPTEDS 311
>sp|B4KF66|KRR1_DROMO KRR1 small subunit processome component homolog OS=Drosophila
mojavensis GN=dbe PE=3 SV=1
Length = 344
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 181/332 (54%), Positives = 241/332 (72%), Gaps = 12/332 (3%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
+P + W K+ F P N G++E SSF+TLFP+YREKYL+E WP+V+ L E+ + E
Sbjct: 15 EPVDNAWSLKIPAFKPEDNPHGLVEESSFATLFPKYREKYLKEVWPLVEQCLAEHHLKAE 74
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D+ CDIIKIGNLV
Sbjct: 75 LDLIEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDTGCDIIKIGNLV 134
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV D M
Sbjct: 135 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLDTMN 194
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFP 261
N +HP+Y+IK LM+K+EL KDP LA E+W RFLPKFK KN+ ++K +K YTPFP
Sbjct: 195 N-VHPIYNIKALMIKRELMKDPKLAGEDWSRFLPKFKNKNISKRKQPKNKKPKKEYTPFP 253
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE---- 317
P SKIDK L +GEYFL++ +K++K+ QE+ KQAE + +R+ F+PP E
Sbjct: 254 PQQPESKIDKQLATGEYFLNKEQKQAKRQQERTAKQAEAAKKQDERRNKDFVPPTEDTPG 313
Query: 318 PSRQNSCEAEDKTNDVAAM-AKSLKEKAKKLR 348
PSR+ + AED DV A+ AK +K KK R
Sbjct: 314 PSRKRA--AEDNKVDVQALKAKLMKANKKKER 343
>sp|B3N899|KRR1_DROER KRR1 small subunit processome component homolog OS=Drosophila
erecta GN=dbe PE=3 SV=1
Length = 345
Score = 346 bits (887), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/329 (53%), Positives = 238/329 (72%), Gaps = 5/329 (1%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
DP + W K+ F N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + E
Sbjct: 14 DPVDNAWAMKIPTFREEDNPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAE 73
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+L+EGSM V T+RKT DPYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV
Sbjct: 74 LDLMEGSMVVRTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLV 133
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M
Sbjct: 134 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMN 193
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFP 261
N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFP
Sbjct: 194 N-VHPIYNIKALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFP 252
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQ 321
P SK+DK L SGEYFL++ +K++K+ QE+ EKQ E +R+ F+PP E S
Sbjct: 253 PSQPESKVDKQLASGEYFLNQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESAS 312
Query: 322 NSCEAEDKTNDVAAMAKSLKEKAKKLRKQ 350
+S + ED + K+LK K K K+
Sbjct: 313 SSLKKEDGFSSSKVDVKALKAKLIKANKK 341
>sp|B4G9L6|KRR1_DROPE KRR1 small subunit processome component homolog OS=Drosophila
persimilis GN=dbe PE=3 SV=1
Length = 340
Score = 345 bits (885), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 176/322 (54%), Positives = 235/322 (72%), Gaps = 7/322 (2%)
Query: 26 DPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCE 83
DP + W K+ F N GM+E SSF+TLFP+YREKYL+E WP+V+ + E+ + E
Sbjct: 13 DPVDNAWSLKIPAFRQEDNPHGMVEESSFATLFPKYREKYLREVWPLVEQCVAEHQLKAE 72
Query: 84 LNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLV 143
L+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D++ CDIIKIGNLV
Sbjct: 73 LDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLV 132
Query: 144 RNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQ 203
KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M
Sbjct: 133 HKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMN 192
Query: 204 NKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFP 261
N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPFP
Sbjct: 193 N-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQPKSKKPKKEYTPFP 251
Query: 262 PPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE--PS 319
P SKIDK L SGEYFL++ +K++K+ QE+ KQA+ + +R+ F+PP E PS
Sbjct: 252 PAQPESKIDKQLASGEYFLNQEQKQAKRNQERSAKQADAAKKQDERRNKDFVPPTEEAPS 311
Query: 320 RQNSCEAEDKTNDVAAMAKSLK 341
R+ E K + A AK +K
Sbjct: 312 RKRQAEDSSKVDVKALKAKLVK 333
>sp|Q3B7L9|KRR1_BOVIN KRR1 small subunit processome component homolog OS=Bos taurus
GN=KRR1 PE=2 SV=2
Length = 382
Score = 345 bits (885), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 169/290 (58%), Positives = 223/290 (76%), Gaps = 3/290 (1%)
Query: 30 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEG 89
D WK F N G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++ L+L+EG
Sbjct: 38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEG 97
Query: 90 SMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERF 149
SMTV TT+KT DPYII++ARDLI+LL+RSV QAI+IL D++ CDIIKIG+LVRNKERF
Sbjct: 98 SMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERF 157
Query: 150 VKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPV 209
VKRRQ L+GP STLKALE+LT CYI+VQGNTV+A+G F GLK+VR++V D M+N +HP+
Sbjct: 158 VKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPI 216
Query: 210 YHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPS 267
Y+IK LM+K+EL KD L +++W+RFLP+FK KNV ++K K+ YTPFPPP S
Sbjct: 217 YNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPES 276
Query: 268 KIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
+IDK L SGEYFL +K+ +K + + KQAE ++ + +R+ AFIPP+E
Sbjct: 277 QIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326
>sp|Q9VPU8|KRR1_DROME KRR1 small subunit processome component homolog OS=Drosophila
melanogaster GN=dbe PE=1 SV=1
Length = 345
Score = 345 bits (884), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 171/311 (54%), Positives = 232/311 (74%), Gaps = 3/311 (0%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N GM+E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGMVEESSFATLFPKYRERYLKEVWPLVEQCLAEHHLKAELDLMEGSMVVKTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKRRQ L+GPN
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNG 151
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
+TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M N +HP+Y+IK LM+K+EL
Sbjct: 152 ATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNN-VHPIYNIKALMIKREL 210
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYF 279
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SGEYF
Sbjct: 211 MKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGEYF 270
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTNDVAAMAKS 339
L++ +K++K+ QE+ EKQ E +R+ F+PP E S +S + ED ++ K+
Sbjct: 271 LNQEQKQAKRNQERTEKQKEAAKRQDERRNKDFVPPTEESAASSRKKEDGSSSSKVDVKA 330
Query: 340 LKEKAKKLRKQ 350
LK K K K+
Sbjct: 331 LKAKLIKANKK 341
>sp|B4P2Y8|KRR1_DROYA KRR1 small subunit processome component homolog OS=Drosophila
yakuba GN=dbe PE=3 SV=1
Length = 344
Score = 338 bits (867), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 231/310 (74%), Gaps = 6/310 (1%)
Query: 42 NEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRD 101
N G++E SSF+TLFP+YRE+YL+E WP+V+ L E+ + EL+L+EGSM V T+RKT D
Sbjct: 32 NPHGVVEESSFATLFPKYRERYLKEVWPLVEQCLSEHHLKAELDLMEGSMVVKTSRKTWD 91
Query: 102 PYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNS 161
PYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKRRQ L+GPN
Sbjct: 92 PYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKRRQRLIGPNG 151
Query: 162 STLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKEL 221
+TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR IV + M N +HP+Y+IK LM+K+EL
Sbjct: 152 ATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVRDIVLETMNN-VHPIYNIKALMIKREL 210
Query: 222 EKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKIDKLLESGEYF 279
KDP LANE+W RFLPKFK KN+ ++K +K+ YTPFPP SK+DK L SGEYF
Sbjct: 211 MKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKQKKEYTPFPPSQPESKVDKQLASGEYF 270
Query: 280 LSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSRQNSCEAEDKTN---DVAAM 336
L++ +K++K+ Q + EKQ E +R+ F+PP E S +S + ED ++ DV A+
Sbjct: 271 LNQEQKQAKRNQGRTEKQKEAAKRQDERRNKDFVPPTEESAASSRKKEDGSSTKVDVKAL 330
Query: 337 AKSLKEKAKK 346
L + KK
Sbjct: 331 KAKLIKANKK 340
>sp|B3MM49|KRR1_DROAN KRR1 small subunit processome component homolog OS=Drosophila
ananassae GN=dbe PE=3 SV=1
Length = 343
Score = 337 bits (865), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 163/287 (56%), Positives = 218/287 (75%), Gaps = 3/287 (1%)
Query: 33 KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMT 92
K+ F P N GM+E SSF+TLFP+YRE+YL+E WP+V+ + E+ + EL+LVEGSM
Sbjct: 23 KIPSFKPEDNPHGMVEESSFATLFPKYRERYLKEVWPLVEQCVAEHHLKAELDLVEGSMV 82
Query: 93 VSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKR 152
V T+RKT DPYII+KARD+I+L++RSVP QA ++L D++ CDIIKIGNLV KE+FVKR
Sbjct: 83 VKTSRKTWDPYIIIKARDMIKLMARSVPFEQAKRVLQDDIGCDIIKIGNLVHKKEKFVKR 142
Query: 153 RQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHI 212
RQ L+GPN +TLK++E+LT CY+LVQGNTVAA+G +KGL+QVR IV + M N +HP+Y+I
Sbjct: 143 RQRLIGPNGATLKSIELLTDCYVLVQGNTVAALGPYKGLQQVRDIVVETMNN-VHPIYNI 201
Query: 213 KILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKKP--YTPFPPPPQPSKID 270
K LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K YTPFPP SK+
Sbjct: 202 KALMIKRELMKDPRLANEDWSRFLPKFKNKNISKRKQPKVKKAKKEYTPFPPAQPESKVG 261
Query: 271 KLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEE 317
K L SGEYFL++ +K++K+ QE+ KQA+ +R+ F+PP E
Sbjct: 262 KQLASGEYFLNKEQKQAKRQQERSAKQADAAKRQDERRNKDFVPPTE 308
>sp|B4LTY6|KRR1_DROVI KRR1 small subunit processome component homolog OS=Drosophila
virilis GN=dbe PE=3 SV=1
Length = 343
Score = 332 bits (851), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 179/337 (53%), Positives = 239/337 (70%), Gaps = 7/337 (2%)
Query: 18 DKPKPWDEDPNIDHW--KVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGAL 75
D P +P + W K+ F N G++E SSF+TLFP+YREKYL+E WP+V+ +
Sbjct: 7 DGPTKQSTEPVDNAWSLKIPTFKAEDNPHGLVEESSFATLFPKYREKYLKEVWPLVQQCV 66
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
E+ + EL+LVEGSM V TTRKT DPYII+K+RD+I+L++RSVP QA ++L D++ CD
Sbjct: 67 AEHHLKAELDLVEGSMVVKTTRKTWDPYIIIKSRDMIKLMARSVPFEQAKRVLQDDIGCD 126
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
IIKIGNLV KE+FVKRRQ L+GPN +TLK++E+LT CY+LVQGNTV+A+G +KGL+QVR
Sbjct: 127 IIKIGNLVHKKEKFVKRRQRLIGPNGATLKSIELLTDCYVLVQGNTVSALGPYKGLQQVR 186
Query: 196 RIVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLPKFKKKNVKQKKVKSKEKK 255
IV + M N +HP+Y+IK LM+K+EL KDP LANE+W RFLPKFK KN+ ++K +K
Sbjct: 187 DIVLETMNN-VHPIYNIKALMIKRELMKDPKLANEDWSRFLPKFKNKNISKRKQPKNKKP 245
Query: 256 P--YTPFPPPPQPSKIDKLLESGEYFLSERKKESKKWQEKQEKQAEKTAENKRKRDAAFI 313
YTPFPP SKIDK L +GEYFL++ +K++KK QE+ KQAE + +R+ F+
Sbjct: 246 KKEYTPFPPAQPESKIDKQLATGEYFLNKEQKQAKKQQERSVKQAEAAKKQDERRNKDFV 305
Query: 314 PPEE--PSRQNSCEAEDKTNDVAAMAKSLKEKAKKLR 348
PP E PS+ AE DV A+ L + KK R
Sbjct: 306 PPTEDAPSQSRKRPAETSKVDVDALKAKLMKANKKNR 342
>sp|Q54UU6|KRR1_DICDI KRR1 small subunit processome component homolog OS=Dictyostelium
discoideum GN=krr1 PE=3 SV=1
Length = 374
Score = 310 bits (795), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 160/277 (57%), Positives = 207/277 (74%), Gaps = 3/277 (1%)
Query: 46 MLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYII 105
+ + SSF+TLFP+YREKYLQE W +V+ L E+G+ C+L+L+EGSMTV+TT+K DP I
Sbjct: 54 LYDDSSFATLFPKYREKYLQEIWKLVENVLHEHGIECKLDLIEGSMTVTTTKKCWDPVAI 113
Query: 106 VKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQHLVGPNSSTLK 165
+KARDLI+LLSRSVP A K+L+D+ CDIIKIG VRNKERFVKRRQ LVGP+ STLK
Sbjct: 114 LKARDLIKLLSRSVPFEHAQKVLNDDYNCDIIKIGGFVRNKERFVKRRQRLVGPDGSTLK 173
Query: 166 ALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMQNKMHPVYHIKILMVKKELEKDP 225
A+E+LT CY+LVQGNTV+++G + GL QVR+IVEDC++N +HP+Y+IK LM+K+ELEKD
Sbjct: 174 AIELLTKCYVLVQGNTVSSIGPWNGLVQVRKIVEDCLKN-IHPIYNIKELMIKRELEKDE 232
Query: 226 ALANENWDRFLPKFKKKNVKQKKVKSKEK--KPYTPFPPPPQPSKIDKLLESGEYFLSER 283
L NENW+R+LP+FKK N +KK K+K + PF PP P K D +ESGEYF SE
Sbjct: 233 TLKNENWERYLPQFKKTNQNKKKKVQKKKKDRDAAPFAPPQLPRKEDLAMESGEYFASEE 292
Query: 284 KKESKKWQEKQEKQAEKTAENKRKRDAAFIPPEEPSR 320
KK K +++ K AE + K +R + I P E R
Sbjct: 293 KKRRKIQADREAKHAESDQKRKDERQKSQIAPAEKDR 329
>sp|Q57885|Y443_METJA KH domain-containing protein MJ0443 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0443 PE=4 SV=1
Length = 227
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Query: 76 KEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCD 135
KE GV E++ +G++T+ T K +DP + KARD++R + R A+K++ DE +
Sbjct: 42 KELGVKLEID-ADGTVTIYGTDKQKDPLAVWKARDIVRAIGRGFNPEIALKLVSDEYVLE 100
Query: 136 IIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVR 195
+I I + + + + ++G + + +E LTG + V GNTVA +G + ++ +
Sbjct: 101 VIDIEDYASSDNSIRRLKGRVIGKEGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAK 160
Query: 196 RIVEDCMQNKMHP 208
VE ++ H
Sbjct: 161 EAVEMLLRGASHA 173
>sp|Q4WNG7|PNO1_ASPFU Pre-rRNA-processing protein pno1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pno1
PE=3 SV=1
Length = 252
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 10/192 (5%)
Query: 10 NKKHKGKHDKPKPW------DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKY 63
+ + G+ + P P D ID F P + G +L V + P +R
Sbjct: 27 DAQASGQGEAPSPIPTESAQHSDMRIDEESRPVFTPITDAGTVLRVETRKVPVPPHRMTP 86
Query: 64 LQEAWPMVKGALKEY-GVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAP 122
L+ WP + L E+ + +N+ ++ + T++ T D + K D ++ +
Sbjct: 87 LKANWPKIYPPLVEHLKLQVRMNIKNRAVELRTSKFTTDTGALQKGEDFVKAFTLGFDVD 146
Query: 123 QAIKILD-DEMQCDIIKIGNL--VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQG 179
AI +L D++ +I ++ N E + + G + T A+E + +++QG
Sbjct: 147 DAIALLRLDDLYIRSFEIRDVKASLNGEHLSRAIGRIAGKDGKTKFAIENASRTRVVLQG 206
Query: 180 NTVAAMGSFKGL 191
V +G F+ L
Sbjct: 207 TKVTILGRFRDL 218
>sp|Q1DQZ5|PNO1_COCIM Pre-rRNA-processing protein PNO1 OS=Coccidioides immitis (strain
RS) GN=PNO1 PE=3 SV=1
Length = 255
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 75/178 (42%), Gaps = 3/178 (1%)
Query: 24 DEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEY-GVSC 82
D D ++D F P G + + P +R L+ AWP + L E+ +
Sbjct: 51 DTDMHVDEEGRPLFTPITATDGAYRIENRKVPVPPHRMSPLKAAWPKIYPPLVEHLKLQV 110
Query: 83 ELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILD-DEMQCDIIKIGN 141
+N+ ++ + T++ T D + K D I+ + AI +L D++ + +I +
Sbjct: 111 RMNIKSKAVELRTSKNTTDTGALQKGEDFIKAFTLGFDVDDAIALLRLDDLYIETFEIKD 170
Query: 142 L-VRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIV 198
+ N E + + G + T A+E + +++ + +G F+ ++ R +
Sbjct: 171 VKPLNGEHLGRAIGRIAGKDGKTKFAIENASRTRVVLADQKIHILGGFRNIRIAREAI 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,933,403
Number of Sequences: 539616
Number of extensions: 6428133
Number of successful extensions: 33356
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 798
Number of HSP's that attempted gapping in prelim test: 28515
Number of HSP's gapped (non-prelim): 3422
length of query: 376
length of database: 191,569,459
effective HSP length: 119
effective length of query: 257
effective length of database: 127,355,155
effective search space: 32730274835
effective search space used: 32730274835
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)