Query 017155
Match_columns 376
No_of_seqs 238 out of 1811
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0063 Predicted sugar kinase 100.0 4.8E-52 1E-56 399.0 26.9 274 62-372 10-284 (284)
2 KOG3974 Predicted sugar kinase 100.0 7.6E-50 1.6E-54 369.6 25.8 281 67-371 12-295 (306)
3 PRK10565 putative carbohydrate 100.0 1.4E-49 3.1E-54 411.2 29.1 266 63-371 233-500 (508)
4 PF01256 Carb_kinase: Carbohyd 100.0 3.6E-50 7.7E-55 379.7 20.3 241 88-367 1-242 (242)
5 TIGR00196 yjeF_cterm yjeF C-te 100.0 4.2E-45 9.1E-50 350.6 28.5 264 68-371 7-272 (272)
6 cd01171 YXKO-related B.subtili 100.0 1.3E-44 2.9E-49 343.0 25.7 253 78-366 1-254 (254)
7 TIGR00694 thiM hydroxyethylthi 100.0 1.3E-28 2.9E-33 233.8 19.7 194 164-371 41-246 (249)
8 COG0351 ThiD Hydroxymethylpyri 100.0 3.1E-27 6.8E-32 223.3 20.8 218 85-346 3-244 (263)
9 PRK09355 hydroxyethylthiazole 100.0 1E-26 2.3E-31 222.6 21.2 192 164-369 46-250 (263)
10 COG2145 ThiM Hydroxyethylthiaz 99.9 3.2E-25 6.9E-30 207.3 19.8 231 105-371 6-254 (265)
11 PF02110 HK: Hydroxyethylthiaz 99.9 1.8E-25 3.8E-30 210.7 17.8 226 108-370 3-245 (246)
12 PTZ00493 phosphomethylpyrimidi 99.9 1.5E-24 3.3E-29 212.0 22.2 229 85-350 4-288 (321)
13 cd01170 THZ_kinase 4-methyl-5- 99.9 1.5E-24 3.2E-29 205.4 20.8 189 164-366 41-242 (242)
14 TIGR00097 HMP-P_kinase phospho 99.9 5.1E-23 1.1E-27 195.5 20.6 217 88-348 1-241 (254)
15 PRK12616 pyridoxal kinase; Rev 99.9 6.6E-22 1.4E-26 189.9 21.1 222 85-349 3-251 (270)
16 PRK06427 bifunctional hydroxy- 99.9 3.3E-21 7.1E-26 183.9 22.6 222 85-350 4-251 (266)
17 cd01169 HMPP_kinase 4-amino-5- 99.9 1.2E-21 2.6E-26 183.8 18.9 213 87-342 1-236 (242)
18 PRK12412 pyridoxal kinase; Rev 99.9 6.5E-21 1.4E-25 182.8 22.4 216 86-347 2-246 (268)
19 PLN02898 HMP-P kinase/thiamin- 99.9 6.3E-21 1.4E-25 198.1 20.8 225 81-348 5-254 (502)
20 KOG2598 Phosphomethylpyrimidin 99.9 2.6E-21 5.6E-26 190.6 16.8 231 74-347 12-283 (523)
21 PRK08573 phosphomethylpyrimidi 99.9 2.5E-20 5.4E-25 191.0 24.0 244 86-372 3-281 (448)
22 PRK09517 multifunctional thiam 99.9 1E-20 2.2E-25 204.8 20.7 228 79-348 235-485 (755)
23 PTZ00347 phosphomethylpyrimidi 99.8 7.2E-20 1.6E-24 190.2 20.5 220 83-349 228-480 (504)
24 PRK14713 multifunctional hydro 99.8 4.8E-20 1E-24 192.6 19.0 222 83-346 27-271 (530)
25 PF08543 Phos_pyr_kin: Phospho 99.8 2.7E-20 5.9E-25 176.4 15.5 212 95-350 1-237 (246)
26 PRK12413 phosphomethylpyrimidi 99.8 7.1E-19 1.5E-23 166.6 22.0 223 84-349 2-244 (253)
27 cd01173 pyridoxal_pyridoxamine 99.8 2.6E-18 5.7E-23 162.7 18.0 220 87-343 1-247 (254)
28 PRK07105 pyridoxamine kinase; 99.8 5.5E-17 1.2E-21 156.6 23.6 254 85-372 4-283 (284)
29 COG1105 FruK Fructose-1-phosph 99.7 1.3E-15 2.7E-20 147.8 18.9 178 164-366 121-301 (310)
30 PRK05756 pyridoxamine kinase; 99.7 1.5E-14 3.2E-19 139.8 22.5 226 87-350 3-258 (286)
31 PTZ00344 pyridoxal kinase; Pro 99.6 3.5E-13 7.5E-18 131.2 20.7 230 85-351 4-262 (296)
32 PRK08176 pdxK pyridoxal-pyrido 99.5 2.7E-12 5.9E-17 124.0 20.8 223 87-349 17-268 (281)
33 PLN02978 pyridoxal kinase 99.3 6.4E-11 1.4E-15 116.1 18.0 159 172-347 86-267 (308)
34 TIGR00687 pyridox_kin pyridoxa 99.3 6.1E-10 1.3E-14 107.6 22.4 209 87-322 3-239 (286)
35 COG2870 RfaE ADP-heptose synth 99.2 1.3E-09 2.9E-14 107.9 17.0 170 161-363 132-309 (467)
36 TIGR02198 rfaE_dom_I rfaE bifu 99.1 7.8E-09 1.7E-13 100.4 19.3 145 163-322 134-282 (315)
37 cd00287 ribokinase_pfkB_like r 99.1 2.5E-09 5.5E-14 96.1 13.5 132 174-312 59-195 (196)
38 PRK10294 6-phosphofructokinase 99.1 1E-08 2.3E-13 99.7 18.6 142 170-322 128-272 (309)
39 cd01174 ribokinase Ribokinase 99.0 1.4E-08 3E-13 97.4 17.5 148 159-322 116-266 (292)
40 cd01164 FruK_PfkB_like 1-phosp 99.0 1.1E-08 2.4E-13 98.3 16.1 143 168-322 124-268 (289)
41 TIGR03168 1-PFK hexose kinase, 99.0 2.2E-08 4.7E-13 96.9 18.2 143 168-322 123-267 (303)
42 PRK11316 bifunctional heptose 99.0 2.4E-08 5.2E-13 103.0 19.3 141 165-322 136-280 (473)
43 cd01166 KdgK 2-keto-3-deoxyglu 99.0 9.9E-09 2.1E-13 98.3 15.2 146 168-322 120-273 (294)
44 cd01172 RfaE_like RfaE encodes 99.0 2.6E-08 5.7E-13 96.1 17.9 142 164-322 126-274 (304)
45 PRK11142 ribokinase; Provision 99.0 2.3E-08 4.9E-13 96.7 17.0 150 157-322 117-269 (306)
46 PRK09513 fruK 1-phosphofructok 99.0 3.6E-08 7.8E-13 96.1 17.7 144 167-322 126-271 (312)
47 COG2240 PdxK Pyridoxal/pyridox 98.9 1.4E-07 3E-12 90.6 20.8 206 87-322 2-233 (281)
48 TIGR03828 pfkB 1-phosphofructo 98.9 4.2E-08 9.1E-13 94.6 17.4 143 168-322 123-267 (304)
49 PRK13508 tagatose-6-phosphate 98.9 8.2E-08 1.8E-12 93.4 19.3 147 165-322 119-269 (309)
50 TIGR01231 lacC tagatose-6-phos 98.9 9.6E-08 2.1E-12 92.9 19.7 148 164-322 118-269 (309)
51 PRK09850 pseudouridine kinase; 98.9 1E-07 2.2E-12 93.0 18.7 149 159-322 121-272 (313)
52 TIGR02152 D_ribokin_bact ribok 98.9 1.1E-07 2.5E-12 91.2 17.6 150 158-322 110-262 (293)
53 PLN02379 pfkB-type carbohydrat 98.8 4.8E-07 1E-11 90.9 19.7 167 169-361 174-348 (367)
54 PTZ00292 ribokinase; Provision 98.8 2.5E-07 5.4E-12 90.6 17.2 152 157-322 131-290 (326)
55 cd01941 YeiC_kinase_like YeiC- 98.8 3.3E-07 7.1E-12 87.6 17.1 149 161-322 117-271 (288)
56 PRK09954 putative kinase; Prov 98.7 4.7E-07 1E-11 90.3 17.9 150 157-322 172-325 (362)
57 cd01167 bac_FRK Fructokinases 98.7 2.6E-07 5.5E-12 88.7 15.4 142 168-320 116-265 (295)
58 PLN02341 pfkB-type carbohydrat 98.7 3E-07 6.6E-12 95.2 17.0 142 167-322 219-373 (470)
59 cd01168 adenosine_kinase Adeno 98.7 2.2E-07 4.8E-12 90.3 15.0 140 169-322 142-289 (312)
60 PLN02813 pfkB-type carbohydrat 98.7 7.1E-07 1.5E-11 91.4 18.3 146 168-322 220-371 (426)
61 KOG2599 Pyridoxal/pyridoxine/p 98.7 8.7E-07 1.9E-11 84.0 15.7 139 170-314 79-238 (308)
62 PTZ00247 adenosine kinase; Pro 98.6 5.8E-07 1.3E-11 89.0 14.6 143 169-322 156-314 (345)
63 cd01945 ribokinase_group_B Rib 98.6 1.8E-06 4E-11 82.4 16.3 132 170-322 124-258 (284)
64 cd01946 ribokinase_group_C Rib 98.6 1.4E-06 3.1E-11 83.2 15.1 131 168-314 110-245 (277)
65 cd01944 YegV_kinase_like YegV- 98.6 2.3E-06 5E-11 82.1 15.8 141 170-322 123-270 (289)
66 PLN02323 probable fructokinase 98.6 3.6E-06 7.8E-11 82.6 17.4 139 169-314 133-280 (330)
67 PRK09434 aminoimidazole ribosi 98.5 2.2E-06 4.8E-11 82.9 15.5 141 170-321 117-266 (304)
68 PF00294 PfkB: pfkB family car 98.5 1.9E-06 4.1E-11 82.6 12.4 142 167-314 122-270 (301)
69 PLN02548 adenosine kinase 98.3 7.1E-06 1.5E-10 80.6 13.1 144 169-322 145-303 (332)
70 cd01942 ribokinase_group_A Rib 98.3 1.7E-05 3.6E-10 75.5 13.5 130 168-322 122-258 (279)
71 cd01940 Fructoselysine_kinase_ 98.2 3.4E-05 7.4E-10 72.9 15.3 128 169-321 109-241 (264)
72 PRK15074 inosine/guanosine kin 98.2 2.6E-05 5.7E-10 80.1 14.3 105 169-282 183-294 (434)
73 PLN02630 pfkB-type carbohydrat 98.1 0.00024 5.3E-09 70.6 19.6 156 170-365 120-289 (335)
74 cd01937 ribokinase_group_D Rib 98.1 5.9E-05 1.3E-09 71.0 13.6 129 170-322 105-238 (254)
75 COG0524 RbsK Sugar kinases, ri 98.1 8.2E-05 1.8E-09 72.2 14.4 140 169-322 126-273 (311)
76 cd01947 Guanosine_kinase_like 98.0 0.00013 2.8E-09 69.1 14.8 123 170-322 119-244 (265)
77 cd01943 MAK32 MAK32 kinase. M 98.0 0.00019 4E-09 71.0 15.9 143 170-322 118-284 (328)
78 PLN02543 pfkB-type carbohydrat 97.7 0.0021 4.5E-08 67.3 17.3 146 169-314 263-442 (496)
79 PLN02967 kinase 97.6 0.00069 1.5E-08 71.8 13.0 146 169-314 332-500 (581)
80 PRK09813 fructoselysine 6-kina 97.3 0.0043 9.2E-08 58.7 13.3 124 170-322 111-239 (260)
81 cd01939 Ketohexokinase Ketohex 97.1 0.0093 2E-07 57.3 13.3 129 170-321 125-267 (290)
82 KOG2854 Possible pfkB family c 96.1 0.073 1.6E-06 52.5 11.9 145 169-322 156-314 (343)
83 KOG2855 Ribokinase [Carbohydra 94.0 0.24 5.2E-06 49.1 8.4 87 228-319 184-282 (330)
84 KOG3009 Predicted carbohydrate 93.2 0.81 1.8E-05 47.2 10.6 63 171-239 424-486 (614)
85 PF11965 DUF3479: Domain of un 75.1 23 0.00049 31.9 8.8 78 87-198 2-81 (164)
86 COG1440 CelA Phosphotransferas 74.5 2.3 5E-05 35.1 2.1 43 165-213 41-84 (102)
87 COG1646 Predicted phosphate-bi 72.4 13 0.00028 35.2 6.9 70 172-244 41-117 (240)
88 COG0541 Ffh Signal recognition 71.1 7 0.00015 40.3 5.1 102 162-274 143-248 (451)
89 TIGR00730 conserved hypothetic 69.8 28 0.0006 31.6 8.3 102 85-213 31-137 (178)
90 COG0084 TatD Mg-dependent DNas 68.7 12 0.00027 35.9 6.1 53 160-212 73-134 (256)
91 COG1099 Predicted metal-depend 66.3 16 0.00036 34.5 6.1 51 162-212 84-136 (254)
92 TIGR01302 IMP_dehydrog inosine 64.5 49 0.0011 34.3 10.0 115 79-211 204-335 (450)
93 COG1058 CinA Predicted nucleot 63.6 7.6 0.00016 37.4 3.5 48 164-217 52-101 (255)
94 TIGR01769 GGGP geranylgeranylg 60.2 39 0.00084 31.4 7.4 43 172-217 24-67 (205)
95 PRK10812 putative DNAse; Provi 58.2 25 0.00055 33.7 6.1 50 163-212 77-133 (265)
96 TIGR01768 GGGP-family geranylg 58.1 23 0.00049 33.5 5.6 68 172-242 27-100 (223)
97 PRK10425 DNase TatD; Provision 58.0 24 0.00052 33.8 5.9 50 163-212 74-130 (258)
98 cd02812 PcrB_like PcrB_like pr 56.5 32 0.00068 32.4 6.3 72 171-244 24-101 (219)
99 COG0062 Uncharacterized conser 54.2 52 0.0011 30.6 7.2 74 24-116 7-80 (203)
100 PLN02274 inosine-5'-monophosph 54.2 1E+02 0.0023 32.6 10.4 112 81-212 230-360 (505)
101 PF01118 Semialdhyde_dh: Semia 53.8 65 0.0014 26.7 7.2 95 87-216 1-102 (121)
102 PRK05826 pyruvate kinase; Prov 53.0 29 0.00064 36.3 6.0 52 161-213 226-282 (465)
103 PRK02705 murD UDP-N-acetylmura 52.5 85 0.0018 32.1 9.3 38 167-211 63-100 (459)
104 cd00288 Pyruvate_Kinase Pyruva 52.1 31 0.00067 36.3 6.0 49 161-210 226-279 (480)
105 PRK04169 geranylgeranylglycery 50.8 51 0.0011 31.2 6.7 69 171-242 31-105 (232)
106 cd05565 PTS_IIB_lactose PTS_II 50.0 21 0.00046 29.2 3.5 42 165-212 40-82 (99)
107 PRK12475 thiamine/molybdopteri 48.6 1.6E+02 0.0034 29.4 10.2 100 85-211 24-149 (338)
108 PRK07107 inosine 5-monophospha 47.8 1.1E+02 0.0025 32.2 9.5 116 77-211 221-360 (502)
109 TIGR00200 cinA_nterm competenc 46.2 57 0.0012 33.6 6.8 47 164-214 51-97 (413)
110 PF01041 DegT_DnrJ_EryC1: DegT 45.4 26 0.00057 34.8 4.1 102 86-211 41-148 (363)
111 PLN02623 pyruvate kinase 43.0 50 0.0011 35.5 5.9 47 161-208 330-381 (581)
112 PF01026 TatD_DNase: TatD rela 40.9 33 0.00072 32.4 3.9 78 163-242 74-168 (255)
113 COG0075 Serine-pyruvate aminot 40.9 1.9E+02 0.0042 29.5 9.5 107 85-212 55-170 (383)
114 KOG2585 Uncharacterized conser 40.1 51 0.0011 34.1 5.2 55 67-122 246-302 (453)
115 PTZ00300 pyruvate kinase; Prov 39.0 55 0.0012 34.2 5.4 52 160-211 198-253 (454)
116 PTZ00314 inosine-5'-monophosph 38.6 2.5E+02 0.0054 29.6 10.3 117 78-212 220-353 (495)
117 PRK04663 murD UDP-N-acetylmura 38.6 1.5E+02 0.0033 30.2 8.6 36 171-213 67-102 (438)
118 PF13460 NAD_binding_10: NADH( 38.6 2.6E+02 0.0056 24.1 9.8 48 164-213 52-99 (183)
119 PF13241 NAD_binding_7: Putati 37.9 63 0.0014 26.1 4.6 34 85-123 7-40 (103)
120 KOG1205 Predicted dehydrogenas 37.2 1.4E+02 0.0031 29.1 7.6 88 84-184 10-103 (282)
121 PF05368 NmrA: NmrA-like famil 37.2 1.2E+02 0.0027 27.5 7.1 99 88-212 1-102 (233)
122 PF01488 Shikimate_DH: Shikima 36.9 39 0.00084 28.7 3.3 35 84-122 11-45 (135)
123 TIGR00853 pts-lac PTS system, 36.6 48 0.001 26.7 3.6 44 165-214 43-87 (95)
124 PRK06739 pyruvate kinase; Vali 34.7 86 0.0019 31.6 5.8 71 161-242 218-292 (352)
125 PRK04308 murD UDP-N-acetylmura 34.2 1.3E+02 0.0029 30.7 7.3 35 171-212 66-100 (445)
126 PRK15116 sulfur acceptor prote 34.1 1.6E+02 0.0035 28.5 7.4 34 86-123 31-64 (268)
127 TIGR02355 moeB molybdopterin s 33.9 3.9E+02 0.0085 25.1 10.0 34 86-123 25-58 (240)
128 PRK09206 pyruvate kinase; Prov 33.7 77 0.0017 33.3 5.5 51 161-211 225-279 (470)
129 PRK01438 murD UDP-N-acetylmura 33.4 1.3E+02 0.0028 31.1 7.1 29 86-119 17-45 (480)
130 PRK06354 pyruvate kinase; Prov 32.9 80 0.0017 34.1 5.6 48 161-208 231-282 (590)
131 PF12242 Eno-Rase_NADH_b: NAD( 32.7 31 0.00067 27.1 1.8 27 86-114 40-66 (78)
132 PRK03369 murD UDP-N-acetylmura 32.7 1.5E+02 0.0033 30.9 7.6 35 170-211 68-102 (488)
133 PRK11449 putative deoxyribonuc 32.5 1.2E+02 0.0025 29.0 6.2 50 163-212 78-136 (258)
134 TIGR00725 conserved hypothetic 32.4 2.5E+02 0.0055 24.7 7.9 35 86-124 31-65 (159)
135 PRK06247 pyruvate kinase; Prov 32.2 97 0.0021 32.6 5.9 52 161-212 222-277 (476)
136 PF10087 DUF2325: Uncharacteri 31.8 1E+02 0.0023 24.5 4.9 42 165-210 41-82 (97)
137 PRK14454 ribosomal RNA large s 31.7 1.9E+02 0.0041 28.9 7.8 99 174-278 151-264 (342)
138 KOG1224 Para-aminobenzoate (PA 31.6 96 0.0021 33.1 5.6 41 163-206 56-98 (767)
139 PRK05567 inosine 5'-monophosph 31.2 5.9E+02 0.013 26.6 11.6 112 80-211 209-339 (486)
140 TIGR01470 cysG_Nterm siroheme 31.2 2.9E+02 0.0063 25.3 8.4 34 86-124 10-43 (205)
141 PRK14459 ribosomal RNA large s 31.1 1.9E+02 0.0041 29.5 7.6 98 175-278 180-294 (373)
142 PRK03673 hypothetical protein; 30.6 68 0.0015 32.9 4.4 46 164-213 52-97 (396)
143 PRK02472 murD UDP-N-acetylmura 30.6 1.1E+02 0.0025 31.0 6.2 33 172-211 68-100 (447)
144 PRK01215 competence damage-ind 30.6 2.7E+02 0.0059 26.8 8.3 47 164-214 54-100 (264)
145 COG0002 ArgC Acetylglutamate s 30.0 2E+02 0.0043 29.1 7.4 103 86-217 3-107 (349)
146 PRK00141 murD UDP-N-acetylmura 30.0 1.5E+02 0.0032 30.8 6.9 35 170-211 72-106 (473)
147 COG0001 HemL Glutamate-1-semia 29.9 1.7E+02 0.0036 30.5 7.0 103 85-213 135-244 (432)
148 COG2200 Rtn c-di-GMP phosphodi 29.7 1.8E+02 0.004 27.5 7.0 78 191-276 137-214 (256)
149 COG1879 RbsB ABC-type sugar tr 28.9 1.2E+02 0.0025 29.2 5.6 44 162-211 80-125 (322)
150 PRK06843 inosine 5-monophospha 28.9 5.6E+02 0.012 26.4 10.6 114 78-211 132-264 (404)
151 PRK05597 molybdopterin biosynt 27.8 4.2E+02 0.0092 26.5 9.5 99 86-211 29-151 (355)
152 PF03641 Lysine_decarbox: Poss 27.6 1.5E+02 0.0032 25.2 5.4 22 104-126 4-25 (133)
153 cd05125 Mth938_2P1-like Mth938 27.5 1.2E+02 0.0025 25.5 4.6 54 155-212 37-90 (114)
154 PF01408 GFO_IDH_MocA: Oxidore 27.4 82 0.0018 25.4 3.7 34 87-122 2-35 (120)
155 cd01948 EAL EAL domain. This d 27.4 1.8E+02 0.0038 26.2 6.3 77 192-276 134-210 (240)
156 PLN02762 pyruvate kinase compl 27.2 1.3E+02 0.0029 31.8 6.0 52 160-211 256-311 (509)
157 PRK10076 pyruvate formate lyas 26.0 3.2E+02 0.0069 25.3 7.7 86 172-265 38-126 (213)
158 TIGR01305 GMP_reduct_1 guanosi 25.9 1.4E+02 0.0031 30.0 5.6 107 85-211 95-220 (343)
159 PRK14106 murD UDP-N-acetylmura 25.6 2.5E+02 0.0055 28.5 7.7 32 86-122 6-37 (450)
160 PRK08762 molybdopterin biosynt 24.6 5.6E+02 0.012 25.6 9.8 37 82-122 132-168 (376)
161 TIGR02690 resist_ArsH arsenica 24.4 4.6E+02 0.01 24.5 8.5 34 75-108 16-49 (219)
162 TIGR02356 adenyl_thiF thiazole 24.4 5.4E+02 0.012 23.3 9.7 36 84-123 20-55 (202)
163 PLN02461 Probable pyruvate kin 23.8 1.7E+02 0.0037 31.1 6.0 51 160-210 245-299 (511)
164 TIGR00518 alaDH alanine dehydr 23.7 2.4E+02 0.0053 28.4 7.0 32 84-120 166-197 (370)
165 smart00052 EAL Putative diguan 23.7 2.4E+02 0.0051 25.4 6.4 77 192-276 135-211 (241)
166 KOG0073 GTP-binding ADP-ribosy 23.7 77 0.0017 28.8 2.9 137 36-199 35-177 (185)
167 PRK09424 pntA NAD(P) transhydr 22.8 5.1E+02 0.011 27.5 9.3 36 80-120 160-195 (509)
168 PF04430 DUF498: Protein of un 22.7 53 0.0012 27.0 1.7 52 157-212 38-89 (110)
169 cd01310 TatD_DNAse TatD like p 22.5 2.1E+02 0.0045 26.1 5.8 49 163-211 74-129 (251)
170 PTZ00066 pyruvate kinase; Prov 22.2 1.5E+02 0.0033 31.5 5.2 51 160-210 261-315 (513)
171 PRK08275 putative oxidoreducta 22.1 94 0.002 33.0 3.8 33 87-123 11-43 (554)
172 TIGR00877 purD phosphoribosyla 22.0 3.8E+02 0.0082 27.0 8.1 32 87-123 2-33 (423)
173 cd00248 Mth938-like Mth938-lik 22.0 1.7E+02 0.0037 24.1 4.6 50 157-211 38-87 (109)
174 TIGR00010 hydrolase, TatD fami 21.8 2.2E+02 0.0048 26.0 5.8 51 162-212 73-130 (252)
175 cd00885 cinA Competence-damage 21.5 1.2E+02 0.0026 27.0 3.8 50 164-217 50-99 (170)
176 COG1985 RibD Pyrimidine reduct 21.1 98 0.0021 29.0 3.3 112 163-278 34-153 (218)
177 PF00117 GATase: Glutamine ami 20.8 1.5E+02 0.0032 26.3 4.3 38 169-207 39-76 (192)
178 PRK14462 ribosomal RNA large s 20.8 7.3E+02 0.016 25.0 9.6 100 173-278 162-276 (356)
179 TIGR00551 nadB L-aspartate oxi 20.7 96 0.0021 32.3 3.5 30 87-122 4-33 (488)
180 PRK03670 competence damage-ind 20.6 1.9E+02 0.0041 27.7 5.1 49 165-217 52-101 (252)
181 PF03129 HGTP_anticodon: Antic 20.4 2E+02 0.0044 22.1 4.6 64 175-239 2-65 (94)
182 PLN02765 pyruvate kinase 20.4 2E+02 0.0043 30.7 5.6 49 160-208 259-311 (526)
183 cd01409 SIRT4 SIRT4: Eukaryoti 20.3 1.2E+02 0.0027 29.0 3.9 49 161-213 193-242 (260)
184 PRK04452 acetyl-CoA decarbonyl 20.1 1.8E+02 0.0038 29.0 5.0 50 160-213 161-213 (319)
No 1
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-52 Score=398.98 Aligned_cols=274 Identities=35% Similarity=0.552 Sum_probs=228.6
Q ss_pred cCChhhHHHhhCCCCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccccccCCceeeeccc
Q 017155 62 EADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPIL 141 (376)
Q Consensus 62 ~~~~~~~~~~~lp~r~~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~ 141 (376)
...+.+ +...+|+|++++|||++|+|+|||||..|+||+++|+++|+|+|+|+|+++++.++...+.++.||+|++++.
T Consensus 10 ~~~~~~-~~~~~~~r~~~~HKg~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~~~s~~Pe~mv~~~~ 88 (284)
T COG0063 10 LVGPAD-LIAWLPPRDPDSHKGDYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASALKSYLPELMVIEVE 88 (284)
T ss_pred cCCHHH-hhccCCCCCccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhhHhhcCcceeEeecc
Confidence 344444 3445889999999999999999999999999999999999999999999999999888899999999999875
Q ss_pred ccccccCCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchh
Q 017155 142 EESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSID 221 (376)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ 221 (376)
+.. ......+.+++|+|++|||+|.+++..+.+.++++... +|+|||||+++++...++
T Consensus 89 ~~~------------------~~~~~~~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~---~p~ViDADaL~~la~~~~ 147 (284)
T COG0063 89 GKK------------------LLEERELVERADAVVIGPGLGRDAEGQEALKELLSSDL---KPLVLDADALNLLAELPD 147 (284)
T ss_pred cch------------------hhHHhhhhccCCEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEeCcHHHHHHhCcc
Confidence 431 01111345789999999999999988888888876432 899999999997775544
Q ss_pred hhccCCCeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCCC-CCC
Q 017155 222 LVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRR-CGG 300 (376)
Q Consensus 222 ll~~~~~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~~-t~G 300 (376)
.+. ....|||||++||+||++.+.. ..+.|+++.+++++++++ ++||+||..|+|++++...++|..|++.+ ++|
T Consensus 148 ~~~-~~~~VlTPH~gEf~rL~g~~~~--~~~~~r~~~a~~~a~~~~-~vvVLKG~~tvI~~~~g~~~~n~~G~~~ma~GG 223 (284)
T COG0063 148 LLD-ERKVVLTPHPGEFARLLGTEVD--EIEVDRLEAARELAAKYG-AVVVLKGAVTVIADPDGEVFVNPTGNPGMATGG 223 (284)
T ss_pred ccc-CCcEEECCCHHHHHHhcCCccc--ccccchHHHHHHHHHHcC-CEEEEeCCCCEEEcCCCcEEEcCCCCHHhccCc
Confidence 332 1238999999999999985431 123588999999999998 57889999999999875566888999985 999
Q ss_pred chHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHhh
Q 017155 301 QGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLEDI 372 (376)
Q Consensus 301 sGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~~~~~a~dii~~l~~~~~~l 372 (376)
|||+|+|+|++||| |+ +. ++ ++||+.|+|+|+.||++++++.+ +++++|+++.||++++.+
T Consensus 224 tGDvLaGii~alLA---q~--~~----~~-~~Aa~~g~~~h~~ag~la~~~~g-~~~a~Dl~~~ip~~~~~~ 284 (284)
T COG0063 224 TGDVLAGIIGALLA---QG--PA----DP-LEAAAAGAWLHGRAGELAAKKHG-GLTATDLIEAIPRALKRL 284 (284)
T ss_pred chHHHHHHHHHHHh---CC--CC----CH-HHHHHHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHhcC
Confidence 99999999999999 77 21 23 58899999999999999998888 999999999999999753
No 2
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-50 Score=369.56 Aligned_cols=281 Identities=50% Similarity=0.871 Sum_probs=241.6
Q ss_pred hHHHhhCCCCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccccccCCceeeecccccccc
Q 017155 67 NVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYN 146 (376)
Q Consensus 67 ~~~~~~lp~r~~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~ 146 (376)
..+++++|+.-.+-|||+.|+|.|||||..|+||||+|+.+|++.|+++++++|..++..+|++|+||+|+||++...
T Consensus 12 ~~vk~~iP~L~~~kHKGq~GrvgViGGc~eYTGAPYFaa~sa~~~GaDL~HiFCe~~Aa~vIKsYsPdLIVHP~l~~~-- 89 (306)
T KOG3974|consen 12 SLVKRIIPPLLSNKHKGQSGRVGVIGGCLEYTGAPYFAAISALRVGADLSHIFCEPEAAVVIKSYSPDLIVHPVLDQE-- 89 (306)
T ss_pred HHHHhhcCCccCcccCCCccceEEEcccccccCccHHHHHHHHHhccceeeeeechhHHHHHhhcCCceeecccccCC--
Confidence 446889999999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred cCCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchh-hhcc
Q 017155 147 ISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSID-LVSG 225 (376)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~-ll~~ 225 (376)
..++.++.|+++.+++|||||||+++...+.++++++.++.+++|+|+|+||+.++..+++ ++..
T Consensus 90 --------------~av~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~ 155 (306)
T KOG3974|consen 90 --------------NAVDIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGG 155 (306)
T ss_pred --------------chHhHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhcc
Confidence 1345677789999999999999999999999999999999999999999999999998776 6656
Q ss_pred CCCeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEc-CCeEEEEeeCCCCCCCCCchHH
Q 017155 226 YPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISD-GEIAKSVSIYGSPRRCGGQGDI 304 (376)
Q Consensus 226 ~~~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~-~~~~~~i~~~g~~~~t~GsGDv 304 (376)
++..|||||..||+||++... .+.|-......|+.+..+++|+.||+.|.|.+ +.++......|..++++|+||+
T Consensus 156 ~~~viLTPNvvEFkRLcd~~l----~~~d~~~~~~~L~~~l~nv~vvqKG~~D~ils~~~ev~~~s~eGs~kRcGGQGDi 231 (306)
T KOG3974|consen 156 YPKVILTPNVVEFKRLCDAEL----DKVDSHSQMQHLAAELMNVTVVQKGESDKILSPDSEVRVCSTEGSLKRCGGQGDI 231 (306)
T ss_pred CceeeeCCcHHHHHHHHHHhh----ccccchHHHHHHHHHhcCeEEEEecCCceeeCCCCeeEEccCCCCccccCCCcch
Confidence 778999999999999998643 22344566777777766799999999996554 4455544446777789999999
Q ss_pred HHHHHHHHHhhhh-ccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHh
Q 017155 305 LSGSVAVFLSWAR-AKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGRSLED 371 (376)
Q Consensus 305 LaG~Iaa~LA~~~-~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~~~~~a~dii~~l~~~~~~ 371 (376)
|+|.|+.|++|++ ...+ ..++.+.|+++++++.+.|+++|+++.+++++++|+.+.+..+++.
T Consensus 232 LaGsla~fl~w~k~~~~e----~~~~~~~a~~a~s~~vr~a~rlafk~~gR~ll~~d~~~~v~~i~~~ 295 (306)
T KOG3974|consen 232 LAGSLATFLSWAKLLSGE----QDSAAFLAAVAGSIMVRRAGRLAFKRHGRSLLTSDIPEEVGTIFKS 295 (306)
T ss_pred hhhHHHHHHHHHHhccCC----ccchhhhhhhhhHHHHHHHHHhhhhhcCcccccchhHHHHhhhhhH
Confidence 9999999999984 2111 1256688999999999999999999999999999999988877764
No 3
>PRK10565 putative carbohydrate kinase; Provisional
Probab=100.00 E-value=1.4e-49 Score=411.23 Aligned_cols=266 Identities=28% Similarity=0.403 Sum_probs=221.3
Q ss_pred CChhhHHHhhCCCCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccccccCCceeeecccc
Q 017155 63 ADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILE 142 (376)
Q Consensus 63 ~~~~~~~~~~lp~r~~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~ 142 (376)
+++++ ++..+|+|++++|||++|+|+|||||..|+||++||+++|+|+|+|+||+++|+.....+..+.||+|++++..
T Consensus 233 ~~~~~-~~~~lp~r~~~shKg~~G~vliigGs~~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~~~~~~~Pe~~~~~~~~ 311 (508)
T PRK10565 233 FDAEQ-LSQWLKPRRPTSHKGDHGRLLIIGGDHGTAGAIRMAGEAALRSGAGLVRVLTRSENIAPLLTARPELMVHELTP 311 (508)
T ss_pred cCHHH-HHhhcCCCCccCCCCCCCeEEEEECCCCCccHHHHHHHHHHHhCCCeEEEEeChhhHHHHhhcCceeEEecCCH
Confidence 56555 67789999999999999999999999999999999999999999999999999998889999999999987521
Q ss_pred cccccCCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhh
Q 017155 143 ESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDL 222 (376)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~l 222 (376)
+++.++++++|+++||||+++++...+++ +.+++.++|+|||||++.++....+
T Consensus 312 ---------------------~~~~~~~~~~~a~viGpGlg~~~~~~~~~----~~~~~~~~P~VLDAdaL~ll~~~~~- 365 (508)
T PRK10565 312 ---------------------DSLEESLEWADVVVIGPGLGQQEWGKKAL----QKVENFRKPMLWDADALNLLAINPD- 365 (508)
T ss_pred ---------------------hHHHHHhhcCCEEEEeCCCCCCHHHHHHH----HHHHhcCCCEEEEchHHHHHhhCcc-
Confidence 23444557899999999999987654444 3344578999999999988764321
Q ss_pred hccCCCeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCCC-CCCc
Q 017155 223 VSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRR-CGGQ 301 (376)
Q Consensus 223 l~~~~~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~~-t~Gs 301 (376)
. ..++|||||.+|+++|++.... .+ +.++.+.+++++++++ ++|++||.+|+|+++++.++++..|++.+ ++||
T Consensus 366 ~--~~~~VLTPh~gE~~rL~~~~~~-~v-~~~~~~~a~~~a~~~~-~~vvlKG~~~iI~~~~~~~~~~~~G~~~ma~~Gs 440 (508)
T PRK10565 366 K--RHNRVITPHPGEAARLLGCSVA-EI-ESDRLLSARRLVKRYG-GVVVLKGAGTVIAAEPDALAIIDVGNAGMASGGM 440 (508)
T ss_pred c--cCCeEECCCHHHHHHHhCCChh-hh-hhhHHHHHHHHHHHhC-CEEEEeCCCcEEEcCCceEEEECCCCCCCCCCCh
Confidence 1 1268999999999999985421 11 1367888999999997 57788999999998655456778899985 8999
Q ss_pred hHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcC-CCCCcHHHHHHHHHHHHHh
Q 017155 302 GDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDK-KRSTLTTDIIECLGRSLED 371 (376)
Q Consensus 302 GDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~-~~~~~a~dii~~l~~~~~~ 371 (376)
||+|+|+|++|+| |+.++ +.||+.|+|+|+.||++++++. ++|++++||+|+||.++++
T Consensus 441 GDvLaGiIaalla---~g~~~--------~~Aa~~a~~lhg~Ag~~a~~~~~~~g~~a~dlid~L~~~~~~ 500 (508)
T PRK10565 441 GDVLSGIIGALLG---QKLSP--------YDAACAGCVAHGAAADVLAARFGTRGMLATDLFSTLQRIVNP 500 (508)
T ss_pred HHHHHHHHHHHHH---cCCCH--------HHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHhH
Confidence 9999999999999 88765 5889999999999999987664 5899999999999998864
No 4
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=100.00 E-value=3.6e-50 Score=379.74 Aligned_cols=241 Identities=33% Similarity=0.514 Sum_probs=197.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccccccCCceeeecccccccccCCCchhhhhhhhhhhHHHHH
Q 017155 88 IAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVD 167 (376)
Q Consensus 88 vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 167 (376)
|+|||||..|+||++||+++|+|+|+|+||+++|++....+..+.||+|+.+++++ ++. ++.
T Consensus 1 VlvigGS~~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~~~~~Pe~m~~~~~~~-----------------~~~-~~~ 62 (242)
T PF01256_consen 1 VLVIGGSEGYPGAAILAARAALRSGAGLVTLATPESIAPVIASYSPEAMVSPLPSD-----------------EDV-EIL 62 (242)
T ss_dssp EEEEE-BTSSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHHHHHTTTSEEEETTHC-----------------CHH-HHH
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHHHhCCceeEEecccch-----------------hhh-hhH
Confidence 79999999999999999999999999999999999999999999999999987521 122 456
Q ss_pred HhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhccccc
Q 017155 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLN 247 (376)
Q Consensus 168 ~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~~ 247 (376)
++++++|+++||||++++++..+++.++++ .+.|+|||+|+++++.... ....++.|||||++||+||++....
T Consensus 63 ~~~~~~~av~iGPGlg~~~~~~~~~~~~~~----~~~p~VlDADaL~~l~~~~--~~~~~~~IlTPH~gE~~rL~~~~~~ 136 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDEETEELLEELLE----SDKPLVLDADALNLLAENP--KKRNAPVILTPHPGEFARLLGKSVE 136 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSHHHHHHHHHHHH----HCSTEEEECHHHHCHHHCC--CCSSSCEEEE-BHHHHHHHHTTTCH
T ss_pred hhhccCCEEEeecCCCCchhhHHHHHHHHh----hcceEEEehHHHHHHHhcc--ccCCCCEEECCCHHHHHHHhCCccc
Confidence 667899999999999999888787777664 3678999999999887532 1123489999999999999987532
Q ss_pred CCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCCC-CCCchHHHHHHHHHHHhhhhccCCcccCC
Q 017155 248 CEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRR-CGGQGDILSGSVAVFLSWARAKGKATTSQ 326 (376)
Q Consensus 248 ~~v~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~~-t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~ 326 (376)
...++.+.+++++++++ ++|++||.+|+|+++++.+++|..|++.+ ++||||+|+|+|++|+| |++++
T Consensus 137 ---~~~~~~~~a~~~a~~~~-~~vvLKG~~t~I~~p~~~~~~n~~gn~~la~gGsGDvLaGii~~lla---q~~~~---- 205 (242)
T PF01256_consen 137 ---IQEDRIEAAREFAKEYG-AVVVLKGAVTIIASPGGRVYVNPTGNPGLATGGSGDVLAGIIAGLLA---QGYDP---- 205 (242)
T ss_dssp ---HCCSHHHHHHHHHHHHT-SEEEEESTSSEEEEETSEEEEE----GGGSSTTHHHHHHHHHHHHHH---HTSSH----
T ss_pred ---chhhHHHHHHHHHhhcC-cEEEEeCCCcEEEecCcceeEeCCCCCCCCCCCcccHHHHHHHHHHH---ccCCH----
Confidence 24689999999999998 57899999999998555566888999885 99999999999999999 88765
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHH
Q 017155 327 MNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGR 367 (376)
Q Consensus 327 ~~~~~~aa~~a~~l~~~ag~~a~~~~~~~~~a~dii~~l~~ 367 (376)
++|+..|+|+|++||+++.++++.+++|+|||++||+
T Consensus 206 ----~~Aa~~av~lHg~Ag~~~~~~~~~~~~a~dli~~iP~ 242 (242)
T PF01256_consen 206 ----FEAACLAVYLHGRAGDLAAEKYGRGMLASDLIDNIPK 242 (242)
T ss_dssp ----HHHHHHHHHHHHHHHHHHCTTCSSC--HHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCcCcHHHHHHhcCC
Confidence 6889999999999999999999889999999999996
No 5
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=100.00 E-value=4.2e-45 Score=350.60 Aligned_cols=264 Identities=31% Similarity=0.483 Sum_probs=218.7
Q ss_pred HHHhhCCCCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccccccCCceeeeccccccccc
Q 017155 68 VMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNI 147 (376)
Q Consensus 68 ~~~~~lp~r~~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~~ 147 (376)
.++..+|+|++++|||++|+||+||||++|+||+++++++++++|+|+||+.++++....+....||+|..++.+
T Consensus 7 ~~~~~~p~~~~~~~K~~~G~vliiaGs~~~~GA~ila~l~~~~~g~~~v~~~~~~~~~~~i~~~~pe~~~~~~~~----- 81 (272)
T TIGR00196 7 GDLLTLPLRDPNSHKGQYGRVLIIGGSDDYSGAPLLAALAALRAGAGLVTVAAPENVITLINSVSPELIVHRLGW----- 81 (272)
T ss_pred HHHHhCCCCCCCCCCCCCCeEEEEeCCCCCCcHHHHHHHHHHHhCCCeEEEEEchhhHHHHhhcCCEEEEecchh-----
Confidence 356678999999999999999999999999999999999999999999999999988778889999999987631
Q ss_pred CCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCC
Q 017155 148 SGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYP 227 (376)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~ 227 (376)
..+++.++++++|+++||+|+++++. +.++++.+++.+.|+|+||++..+..... ....+
T Consensus 82 --------------~~~~~~~~~~~~davvig~Gl~~~~~----~~~l~~~~~~~~~pvVlDa~g~~l~~~~~--~~~~~ 141 (272)
T TIGR00196 82 --------------KVDEDEELLERYDVVVIGPGLGQDPS----FKKAVEEVLELDKPVVLDADALNLLTYDK--PKREG 141 (272)
T ss_pred --------------hHHHHHhhhccCCEEEEcCCCCCCHH----HHHHHHHHHhcCCCEEEEhHHHHHHhhcc--cccCC
Confidence 13456666788999999999998754 55666666778899999999887655321 11234
Q ss_pred CeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCC-CCCCchHHHH
Q 017155 228 LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQGDILS 306 (376)
Q Consensus 228 ~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLa 306 (376)
++|||||..|+++|+|.... +.+++.+++++++++++ ++|++||.+++++++++.++++..+.+. .++|+||+|+
T Consensus 142 ~~vItPN~~El~~L~g~~~~---~~~~~~~aa~~l~~~~~-~vVv~kG~~~~i~~~~~~~~~~~~~~~~~~~~GaGD~la 217 (272)
T TIGR00196 142 EVILTPHPGEFKRLLGLVNE---IQGDRLEAAQDIAQKLQ-AVVVLKGAADVIAAPDGDLWINKTGNAALAKGGTGDVLA 217 (272)
T ss_pred CEEECCCHHHHHHHhCCchh---hhhhHHHHHHHHHHHhC-CEEEEcCCCCEEEcCCCeEEEECCCCCccCCCCchHHHH
Confidence 89999999999999986421 23578889999999887 5788899999888754333455566665 4899999999
Q ss_pred HHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHh
Q 017155 307 GSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKK-RSTLTTDIIECLGRSLED 371 (376)
Q Consensus 307 G~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~-~~~~a~dii~~l~~~~~~ 371 (376)
|+|+++++ +|.++ .+|+..|+++|+.||+.+.++++ +++.++||+++||+++++
T Consensus 218 g~iaa~la---~g~~~--------~~A~~~a~~~~~~a~~~~~~~~g~~~~~~~dl~~~i~~~~~~ 272 (272)
T TIGR00196 218 GLIGGLLA---QNLDP--------FDAACNAAFAHGLAGDLALKNHGAYGLTALDLIEKIPRVCKR 272 (272)
T ss_pred HHHHHHHh---CCCCH--------HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHcC
Confidence 99999999 88765 58899999999999999887765 899999999999999863
No 6
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=100.00 E-value=1.3e-44 Score=343.01 Aligned_cols=253 Identities=38% Similarity=0.603 Sum_probs=206.2
Q ss_pred CCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccccccCCceeeecccccccccCCCchhhhhh
Q 017155 78 PSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRC 157 (376)
Q Consensus 78 ~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~ 157 (376)
+++|||++|+|++||||++|+||++||+++|++.|+|+||++|+++....+..+.||+|+.++..+
T Consensus 1 ~~~hK~~~g~vl~i~Gs~~~~GA~~la~~~a~~~G~g~vt~~~~~~~~~~~~~~~pe~i~~~~~~~-------------- 66 (254)
T cd01171 1 PDSHKGSRGRVLVIGGSRGYTGAAYLAALAALRAGAGLVTVATPPEAAAVIKSYSPELMVHPLLET-------------- 66 (254)
T ss_pred CCCCCcCCCeEEEEeCCCCCccHHHHHHHHHHHHccCEEEEEECHhhHHHHHhcCceeeEeccccc--------------
Confidence 368999999999999999999999999999999999999999999998889999999999986421
Q ss_pred hhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHH
Q 017155 158 ISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNE 237 (376)
Q Consensus 158 ~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E 237 (376)
..+++...+.++|+++||+|+++++. +..+++.+++.++|+|+||+++.++....+.+....++|||||..|
T Consensus 67 ----~~~~~~~~~~~~d~v~ig~gl~~~~~----~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~~~~~~~~~iltPn~~E 138 (254)
T cd01171 67 ----DIEELLELLERADAVVIGPGLGRDEE----AAEILEKALAKDKPLVLDADALNLLADEPSLIKRYGPVVLTPHPGE 138 (254)
T ss_pred ----chHHHHhhhccCCEEEEecCCCCCHH----HHHHHHHHHhcCCCEEEEcHHHHHhhcChhhhccCCCEEECCCHHH
Confidence 12345555678999999999998743 4555555666789999999998766543211111237999999999
Q ss_pred HHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhh
Q 017155 238 YKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWA 316 (376)
Q Consensus 238 ~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~ 316 (376)
+++|+|.... + .+.++.+.++++.++++ .+|++||.+++++++++.++++..+.+. .++|+||+|+|+|+++++
T Consensus 139 ~~~L~g~~~~-~-~~~~~~~~a~~l~~~~~-~~vvlkG~~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la-- 213 (254)
T cd01171 139 FARLLGALVE-E-IQADRLAAAREAAAKLG-ATVVLKGAVTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLA-- 213 (254)
T ss_pred HHHHhCCChh-h-hhhHHHHHHHHHHHHcC-cEEEEcCCCCEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHH--
Confidence 9999986531 1 12356788999998875 6788999999999865555566666665 499999999999999999
Q ss_pred hccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHH
Q 017155 317 RAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLG 366 (376)
Q Consensus 317 ~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~~~~~a~dii~~l~ 366 (376)
+|+++ .+|+..|+++|+.|++.+.++.+++++++|+++.|+
T Consensus 214 -~g~~~--------~eA~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (254)
T cd01171 214 -QGLSP--------LEAAALAVYLHGLAGDLAAKKKGAGLTAADLVAEIP 254 (254)
T ss_pred -cCCCH--------HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHhhcC
Confidence 88875 588999999999999999888889999999999874
No 7
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.96 E-value=1.3e-28 Score=233.83 Aligned_cols=194 Identities=22% Similarity=0.300 Sum_probs=155.1
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccch----hhhccCCCeeEcCCHHHHH
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI----DLVSGYPLAVLTPNVNEYK 239 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~----~ll~~~~~~vITPN~~E~~ 239 (376)
+++.++++.+|+++||+|++.+ +..+.+..+++.+++.++|+|||||++.....+. ++++..+++|||||..|++
T Consensus 41 ~e~~~~~~~~~al~ik~G~l~~-~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~ 119 (249)
T TIGR00694 41 EEVAELAKIAGALVINIGTLDK-ESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIA 119 (249)
T ss_pred HHHHHHHHHcCceEEeCCCCCH-HHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHH
Confidence 5677777889999999999965 5677888888888778999999999987665443 2343334699999999999
Q ss_pred HHhcccc---cCCCC--CCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCC--CCCCchHHHHHHHHHH
Q 017155 240 RLVQKVL---NCEVN--DRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVF 312 (376)
Q Consensus 240 ~L~g~~~---~~~v~--~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~--~t~GsGDvLaG~Iaa~ 312 (376)
+|+|... +.+.. .+|..+.+++++++++ ++|++||+.|+++++++.+.+. .|.+. .++||||+|+|+|++|
T Consensus 120 ~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~-~~VllkG~~D~i~~~~~~~~~~-~g~~~~~~~~GtGc~LssaIaa~ 197 (249)
T TIGR00694 120 SLAGETGLMKGVDSGEGAADAIRAAQQAAQKYG-TVVVITGEVDYVSDGTSVYTIH-NGTELLGKITGSGCLLGSVVAAF 197 (249)
T ss_pred HHhCCCCCCCCcCCccchHHHHHHHHHHHHHhC-CEEEEECCCcEEEeCCEEEEEC-CCChHHhCCccchHHHHHHHHHH
Confidence 9998541 11111 2467889999999887 4788999999999888766443 56654 3699999999999999
Q ss_pred HhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcC-CCCCcHHHHHHHHHHHHHh
Q 017155 313 LSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDK-KRSTLTTDIIECLGRSLED 371 (376)
Q Consensus 313 LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~-~~~~~a~dii~~l~~~~~~ 371 (376)
+| +|.++ +.|+..|.++|+.|++.+.++. ++|+++++|+|.|+....+
T Consensus 198 LA---~g~~~--------~~A~~~A~~~~~~a~~~a~~~~~g~g~~~~~l~d~l~~~~~~ 246 (249)
T TIGR00694 198 CA---VEEDP--------LDAAISACLLYKIAGELAAERSKGPGSFQIELLDALSQLTEE 246 (249)
T ss_pred Hh---cCCCH--------HHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHccCHH
Confidence 99 88765 5889999999999999988764 7999999999999987654
No 8
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.95 E-value=3.1e-27 Score=223.31 Aligned_cols=218 Identities=21% Similarity=0.299 Sum_probs=157.1
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCccc--ccccCCceeeecccccccccCCCchhhhhhh
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPV--IKSYSPELIVHPILEESYNISGLEDEERRCI 158 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~--i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~ 158 (376)
..++|+|||||+.+|||++||++++.+ |+..+|++|.||...+ +...+||.+..|
T Consensus 3 ~~~~LtIAGsD~sGGAGIqADLKTf~a~gvyg~saITaltaQNt~gV~~v~~v~~~~v~~Q------------------- 63 (263)
T COG0351 3 LPVVLTIAGSDSSGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVHGVHPVPPEFVEAQ------------------- 63 (263)
T ss_pred CceEEEEeccCCCccHHHHHHHHHHHhcCCccceEEEEEEEeecCceeeEEeCCHHHHHHH-------------------
Confidence 468999999999999999999999987 8899999999999875 455666665432
Q ss_pred hhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC-CCEEEeCCccc-----ccccc-hhhhc-c-CC-C
Q 017155 159 SSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN-VPIVIDGDGLF-----LVTNS-IDLVS-G-YP-L 228 (376)
Q Consensus 159 ~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~-~pvVLDpdgl~-----ll~~~-~~ll~-~-~~-~ 228 (376)
++.+.+.+ +++++++| |..+.+.++.+.+.++. ++ .|+|+||+... ++... .+.++ + +| .
T Consensus 64 ----l~av~~D~-~v~avKtG--ML~~~eiie~va~~l~~---~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a 133 (263)
T COG0351 64 ----LDAVFSDI-PVDAVKTG--MLGSAEIIEVVAEKLKK---YGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLA 133 (263)
T ss_pred ----HHHHhhcC-CCCEEEEC--CcCCHHHHHHHHHHHHh---cCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccC
Confidence 33444333 67888887 55677778888877765 44 67999999763 33322 12222 3 45 7
Q ss_pred eeEcCCHHHHHHHhcc-cccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc------eEEEcCCeEEEEeeCCCC-CCCCC
Q 017155 229 AVLTPNVNEYKRLVQK-VLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS------DLISDGEIAKSVSIYGSP-RRCGG 300 (376)
Q Consensus 229 ~vITPN~~E~~~L~g~-~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~------~vi~~~~~~~~i~~~g~~-~~t~G 300 (376)
+|+|||..|++.|+|. .+. +++|+.++++.+. ++|+..|++||+| |++++++..+.+...-.+ .++||
T Consensus 134 ~vvTPNl~EA~~L~g~~~i~---~~~d~~~a~~~i~-~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHG 209 (263)
T COG0351 134 TVVTPNLPEAEALSGLPKIK---TEEDMKEAAKLLH-ELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHG 209 (263)
T ss_pred eEecCCHHHHHHHcCCCccC---CHHHHHHHHHHHH-HhCCCEEEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCCC
Confidence 9999999999999995 321 2346666645544 4566789999965 678887766655422222 25999
Q ss_pred chHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHH
Q 017155 301 QGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAAS 346 (376)
Q Consensus 301 sGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~ 346 (376)
|||+||++|+++|| +|+++ ..|+..|-.+...|-+
T Consensus 210 TGCTlSaAIaa~LA---~G~~l--------~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 210 TGCTLSAAIAANLA---KGLSL--------EEAVKKAKEFVTRAIR 244 (263)
T ss_pred ccHHHHHHHHHHHH---cCCCH--------HHHHHHHHHHHHHHHh
Confidence 99999999999999 99886 4667666555555554
No 9
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.95 E-value=1e-26 Score=222.56 Aligned_cols=192 Identities=24% Similarity=0.323 Sum_probs=151.4
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchh----hhccCCCeeEcCCHHHHH
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSID----LVSGYPLAVLTPNVNEYK 239 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~----ll~~~~~~vITPN~~E~~ 239 (376)
+++.++.+.+|+++||+|++.++ ..+.+...++.+++.++|+||||+++.....+.+ +++..+++|||||..|++
T Consensus 46 ~e~~~~~~~~~alvi~~G~l~~~-~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~ 124 (263)
T PRK09355 46 EEAEEMAKIAGALVINIGTLTEE-RIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIA 124 (263)
T ss_pred HHHHHHHHhcCceEEeCCCCCHH-HHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHH
Confidence 45666778899999999999654 4556666777777889999999999876554432 343334799999999999
Q ss_pred HHhccccc---CCCC--CCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCC--CCCCchHHHHHHHHHH
Q 017155 240 RLVQKVLN---CEVN--DRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVF 312 (376)
Q Consensus 240 ~L~g~~~~---~~v~--~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~--~t~GsGDvLaG~Iaa~ 312 (376)
+|+|.... .+.. ..+..+.+++++++++ ++|++||.+|+|+++++.+.+. .|.+. .++|+||+|+|+|+++
T Consensus 125 ~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~-~~VvvkG~~d~I~~~~~~~~~~-~g~~~~~~v~GtGc~L~~~iaa~ 202 (263)
T PRK09355 125 ALAGEAAETKGVDSTDGSADAVEIAKAAAKKYG-TVVVVTGEVDYITDGERVVSVH-NGHPLMTKVTGTGCLLSAVVAAF 202 (263)
T ss_pred HHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhC-CEEEEECCCcEEEeCCEEEEEe-CCCcccCCcccccHHHHHHHHHH
Confidence 99986421 1111 1367788999999887 5788999999999988766554 56654 3699999999999999
Q ss_pred HhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhc-C-CCCCcHHHHHHHHHHHH
Q 017155 313 LSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKD-K-KRSTLTTDIIECLGRSL 369 (376)
Q Consensus 313 LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~-~-~~~~~a~dii~~l~~~~ 369 (376)
+| +|.++ +.|+..|+++|+.||++|.++ . ++|+++.+|+|+|+..-
T Consensus 203 lA---~g~~~--------~~A~~~A~~~~~~a~~~a~~~~~~g~gsf~~~l~d~l~~~~ 250 (263)
T PRK09355 203 AA---VEKDY--------LEAAAAACAVYGIAGELAAERSEKGPGSFQPAFLDALYQLT 250 (263)
T ss_pred Hh---cCCCH--------HHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhCC
Confidence 99 87765 588999999999999998866 4 79999999999998653
No 10
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=99.94 E-value=3.2e-25 Score=207.27 Aligned_cols=231 Identities=20% Similarity=0.283 Sum_probs=182.4
Q ss_pred HHHHHhcccCeeEEecccCCcccc-----cccCCceeeecccccccccCCCchhhhhhhhhhhHHHHHHhhccCCEEEEc
Q 017155 105 AISALKIGADLSHVFCTKDAAPVI-----KSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVG 179 (376)
Q Consensus 105 a~aAlr~Gaglvt~~t~~~~~~~i-----~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIG 179 (376)
.+.-+|---.||+++|..-+.+.. ..-...+|... .++++++.+.+|+++|+
T Consensus 6 ~L~~vr~~~PLvh~iTN~Vv~nftAN~lLAlGaSP~Ma~~-----------------------~eE~~e~~kia~AL~IN 62 (265)
T COG2145 6 TLEKVREKSPLVHCITNDVVQNFTANGLLALGASPVMADA-----------------------PEEVEEFAKIADALLIN 62 (265)
T ss_pred HHHHHhhcCCceEeecchhHhhcchHHHHHcCCCchhccC-----------------------HHHHHHHHHhccceEEe
Confidence 445566667888888865444322 22222344322 25677777889999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccch----hhhccCCCeeEcCCHHHHHHHhcccc---cCCC--
Q 017155 180 PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI----DLVSGYPLAVLTPNVNEYKRLVQKVL---NCEV-- 250 (376)
Q Consensus 180 pGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~----~ll~~~~~~vITPN~~E~~~L~g~~~---~~~v-- 250 (376)
.|.... +..+.+...++.+++.++|+||||+|....+.|. ++++..++++|+.|.+|+..|.|... +.+.
T Consensus 63 IGTL~~-~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~~~~~kGVDa~~ 141 (265)
T COG2145 63 IGTLSA-ERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAALAGEAGGGKGVDAGD 141 (265)
T ss_pred eccCCh-HHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHHHhccccccccccccc
Confidence 998754 5678899999999999999999999998877663 56666679999999999999997653 2222
Q ss_pred CCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCC--CCCCchHHHHHHHHHHHhhhhccCCcccCCCC
Q 017155 251 NDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVFLSWARAKGKATTSQMN 328 (376)
Q Consensus 251 ~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~--~t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~ 328 (376)
...|.++.++.++++++ ++|+++|+.|+|+++++.+.+. +|+|. ..+||||+|++++|+|++ ...+
T Consensus 142 ~~~~~~~~a~~~A~~~~-~vvvvTG~vD~Isdg~~~~~i~-nG~pll~~ItGtGCllgav~aaF~a---v~~d------- 209 (265)
T COG2145 142 GAADAIEAAKKAAQKYG-TVVVVTGEVDYISDGTRVVVIH-NGSPLLGKITGTGCLLGAVVAAFLA---VEKD------- 209 (265)
T ss_pred chhhHHHHHHHHHHHhC-cEEEEECCeeEEEcCCeEEEEE-CCCcHHhhhhccccHHHHHHHHHHh---cCCC-------
Confidence 23578899999999998 6788999999999999988664 89997 399999999999999999 6544
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcC--CCCCcHHHHHHHHHHHHHh
Q 017155 329 PTVLGCIAGSALLRKAASLAFKDK--KRSTLTTDIIECLGRSLED 371 (376)
Q Consensus 329 ~~~~aa~~a~~l~~~ag~~a~~~~--~~~~~a~dii~~l~~~~~~ 371 (376)
+++.|++.|+.+++.||++|+++. ++|.|-..++|.|+..-.+
T Consensus 210 ~~~~A~~~A~~~~~iAge~A~~~~~~gpGsF~~~flD~L~~l~~E 254 (265)
T COG2145 210 PLLDAAAEACAVYGIAGELAAERANKGPGSFRPAFLDALYQLTQE 254 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHhcCHH
Confidence 247889999999999999998776 8999999999999965443
No 11
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=99.94 E-value=1.8e-25 Score=210.71 Aligned_cols=226 Identities=23% Similarity=0.312 Sum_probs=167.2
Q ss_pred HHhcccCeeEEecccCCcccc-----cccCCceeeecccccccccCCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCC
Q 017155 108 ALKIGADLSHVFCTKDAAPVI-----KSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGL 182 (376)
Q Consensus 108 Alr~Gaglvt~~t~~~~~~~i-----~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl 182 (376)
.+|.-..+|+++|..-..+.. ..--..+|... .+++.++.+.+++++|+.|.
T Consensus 3 ~ir~~~PLVh~ITN~Vt~n~~AN~~LA~GasPiMa~~-----------------------~~E~~e~~~~a~al~iNiGT 59 (246)
T PF02110_consen 3 KIREKRPLVHCITNYVTANDVANALLAIGASPIMAEA-----------------------PEEVEEFASIADALVINIGT 59 (246)
T ss_dssp HHHHH--EEEEE--TTTHHHHHHHHHHCTSEEEE--S-----------------------TTTHHHHHHCTSEEEEESTT
T ss_pred hhHhcCCeEEEccccchhhhHHHHHHHcCCCccccCC-----------------------HHHHHHHHHHcCEEEEECCC
Confidence 455666788998876555432 11222344432 12445556789999999998
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccch----hhhccCCCeeEcCCHHHHHHHhcccc---cCCCCC--C
Q 017155 183 GRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI----DLVSGYPLAVLTPNVNEYKRLVQKVL---NCEVND--R 253 (376)
Q Consensus 183 ~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~----~ll~~~~~~vITPN~~E~~~L~g~~~---~~~v~~--~ 253 (376)
.+ ++.++.+...++.+++.++|+||||+|......|. ++++..+++||+.|.+|+..|.|... +.+..+ .
T Consensus 60 l~-~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag~~~~~kGVDs~~~~~ 138 (246)
T PF02110_consen 60 LT-DERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAALAGEDSKAKGVDSGDSDE 138 (246)
T ss_dssp SS-HHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHHHHTCCCCSCSSSSSCGSH
T ss_pred CC-HhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHHHhCcCCCCCCcCcCCcch
Confidence 74 56688999999999999999999999998776663 56655779999999999999998753 222211 2
Q ss_pred cHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCC--CCCCchHHHHHHHHHHHhhhhccCCcccCCCChhH
Q 017155 254 DAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTV 331 (376)
Q Consensus 254 d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~--~t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~ 331 (376)
+..+.+++++++++ ++|+++|+.|+|+++++.+.+. +|++. ..+|+||+|+++||+|++ ...++ +
T Consensus 139 ~~~~~a~~lA~k~~-~vVvvTG~~D~Isdg~~~~~i~-nG~~~l~~itGtGC~lgaliaaf~a---v~~d~--------~ 205 (246)
T PF02110_consen 139 DAIEAAKQLAQKYN-CVVVVTGEVDYISDGNRVYRIP-NGSPLLSKITGTGCMLGALIAAFLA---VAEDP--------L 205 (246)
T ss_dssp HHHHHHHHHHHHTT-SEEEEESSSEEEEESSCEEEEC-SSSGGGGGSTTHHHHHHHHHHHHHC---CCSSH--------H
T ss_pred HHHHHHHHHHHhcC-CEEEEecCCcEEECCCeEEEeC-CCChHhcceeccchHHHHHHHHHHh---ccccc--------h
Confidence 46789999999998 5788899999999999887664 78887 399999999999999999 54443 5
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-CCCCcHHHHHHHHHHHHH
Q 017155 332 LGCIAGSALLRKAASLAFKDK-KRSTLTTDIIECLGRSLE 370 (376)
Q Consensus 332 ~aa~~a~~l~~~ag~~a~~~~-~~~~~a~dii~~l~~~~~ 370 (376)
.|++.|+.+++.||++|.++. ++|.|...++|.|+..-+
T Consensus 206 ~aa~~a~~~~~~Age~A~~~~~gpGSF~~~llD~L~~l~~ 245 (246)
T PF02110_consen 206 EAAVAAVALYGIAGELAAEKSNGPGSFRVALLDALYNLTE 245 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCcC
Confidence 777999999999999988764 899999999999987543
No 12
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.93 E-value=1.5e-24 Score=212.02 Aligned_cols=229 Identities=19% Similarity=0.253 Sum_probs=158.1
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCccc--ccccCCceeeecccccccccCCCchhhhhhh
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPV--IKSYSPELIVHPILEESYNISGLEDEERRCI 158 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~--i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~ 158 (376)
.++||+|||||+.+|||++||++++.+ |+..+|++|.|+...+ +...+||++..|
T Consensus 4 ~p~VLtIAGsDpsGGAGiqADlkt~~alGv~g~sviTalTaQnt~~V~~v~~v~~~~i~~Q------------------- 64 (321)
T PTZ00493 4 VSNILSIAGSDSCGGAGMQADIKTAMGLGCHCCTALVVLTAQNTKEVKRIVEIEEKFIVEQ------------------- 64 (321)
T ss_pred CCEEEEEeeeCCCCchHHHHHHHHHHHcCCccceEEEEEEEEcCCceEEEEECCHHHHHHH-------------------
Confidence 468999999999999999999998887 8899999999999886 445555555422
Q ss_pred hhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhc-C--CCCEEEeCCccc-----cccc-c-hh-hhcc-C
Q 017155 159 SSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQ-S--NVPIVIDGDGLF-----LVTN-S-ID-LVSG-Y 226 (376)
Q Consensus 159 ~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~-~--~~pvVLDpdgl~-----ll~~-~-~~-ll~~-~ 226 (376)
++.+.+.+ ++++|+|| |..+.+..+.+.++++...+ . +.|+|+||+... ++.. . .+ +.+. +
T Consensus 65 ----l~all~D~-~i~aIKiG--mL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Ll 137 (321)
T PTZ00493 65 ----LDSIFADV-TIDVVKLG--VLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLIC 137 (321)
T ss_pred ----HHHHHhCC-CCCEEEEC--CcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhh
Confidence 33343322 57999998 55677888888888865421 1 235999999652 3331 1 11 1122 4
Q ss_pred C-CeeEcCCHHHHHHHhcccc-cCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------------eEEEc-C------
Q 017155 227 P-LAVLTPNVNEYKRLVQKVL-NCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------------DLISD-G------ 283 (376)
Q Consensus 227 ~-~~vITPN~~E~~~L~g~~~-~~~v~~~d~~~~a~~la~~~~~~vVllKG~~--------------~vi~~-~------ 283 (376)
| .+|||||..|++.|+|..- ..+++.+|+.++++++.+++++..|++||+| |++++ +
T Consensus 138 p~a~viTPN~~Ea~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~ 217 (321)
T PTZ00493 138 PISCIITPNFYECKVILEALDCQMDLSKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPT 217 (321)
T ss_pred ccCEEECCCHHHHHHHhCCCcccCCCCHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCcccccc
Confidence 5 7999999999999998210 0111234678889999877677789999976 34432 1
Q ss_pred --------C------eEEEEeeCCCC-CCCCCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHH
Q 017155 284 --------E------IAKSVSIYGSP-RRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLA 348 (376)
Q Consensus 284 --------~------~~~~i~~~g~~-~~t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a 348 (376)
+ ..+.+...-.+ .+++||||+||++|+++|+ +|+++ ..|+..|..+...+=+.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA---~G~~l--------~~Av~~A~~fv~~aI~~s 286 (321)
T PTZ00493 218 GEKQQIDAGGVTYLYDVYKLRSKRKPGKDIHGTGCTLSTAIACYLA---KKHNI--------LQSCIESKKYIYNCIRYA 286 (321)
T ss_pred ccccccccccccccceEEEEEecccCCCCCCChHHHHHHHHHHHHH---cCCCH--------HHHHHHHHHHHHHHHHHH
Confidence 1 12333321222 3479999999999999999 99886 477777776666666655
Q ss_pred hh
Q 017155 349 FK 350 (376)
Q Consensus 349 ~~ 350 (376)
.+
T Consensus 287 ~~ 288 (321)
T PTZ00493 287 YP 288 (321)
T ss_pred hh
Confidence 43
No 13
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.93 E-value=1.5e-24 Score=205.39 Aligned_cols=189 Identities=23% Similarity=0.307 Sum_probs=145.0
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccch----hhhccCCCeeEcCCHHHHH
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI----DLVSGYPLAVLTPNVNEYK 239 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~----~ll~~~~~~vITPN~~E~~ 239 (376)
+++.+++++.|++++|+|++.+ +..+.+..+++.+++.++|+|+||+++....... +++...+.+|||||..|++
T Consensus 41 e~~~~~l~~~d~vvi~~G~l~~-~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~ 119 (242)
T cd01170 41 EEVEELAKIAGALVINIGTLTS-EQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIA 119 (242)
T ss_pred HHHHHHHHHcCcEEEeCCCCCh-HHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHH
Confidence 3455667789999999999865 3455666666667778999999999876544321 2232124799999999999
Q ss_pred HHhcccccC---CC-C--CCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCC--CCCCchHHHHHHHHH
Q 017155 240 RLVQKVLNC---EV-N--DRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAV 311 (376)
Q Consensus 240 ~L~g~~~~~---~v-~--~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~--~t~GsGDvLaG~Iaa 311 (376)
+|+|.+... +. + ++++.++++++.+++++ .|++||.+++++++++.+.+. .+.+. .++|+||+|+|+||+
T Consensus 120 ~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~-~VllkG~~d~l~~~~~~~~~~-~~~~~~~~v~GtGdtLa~aiAa 197 (242)
T cd01170 120 ALAGLTGLGKGVDSSSSDEEDALELAKALARKYGA-VVVVTGEVDYITDGERVVVVK-NGHPLLTKITGTGCLLGAVIAA 197 (242)
T ss_pred HHhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCC-EEEEECCCcEEEECCEEEEEe-CCCccccCCCchHHHHHHHHHH
Confidence 999875321 00 1 34678899999988874 688999999999877766554 34433 369999999999999
Q ss_pred HHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcC-CCCCcHHHHHHHHH
Q 017155 312 FLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDK-KRSTLTTDIIECLG 366 (376)
Q Consensus 312 ~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~-~~~~~a~dii~~l~ 366 (376)
++| +|.++ ..|+..|.++|+.+++.+.++. +++++++||||.|+
T Consensus 198 ~LA---~g~~~--------~~A~~~A~~~~~~a~~~a~~~~~~~~~~~~~l~d~l~ 242 (242)
T cd01170 198 FLA---VGDDP--------LEAAVSAVLVYGIAGELAAERAKGPGSFRVALLDELY 242 (242)
T ss_pred HHh---CCCCH--------HHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHhhC
Confidence 999 88775 5789999999999999887764 69999999999874
No 14
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.91 E-value=5.1e-23 Score=195.54 Aligned_cols=217 Identities=20% Similarity=0.260 Sum_probs=145.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccc--cccCCceeeecccccccccCCCchhhhhhhhhh
Q 017155 88 IAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNISGLEDEERRCISSK 161 (376)
Q Consensus 88 vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i--~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (376)
||+|+|||+++|||++||+.++.+ |+..+|++|.|+...+. ...+||.+..
T Consensus 1 vl~iag~D~sggaGi~aD~~t~~~~g~~~~~v~T~~t~q~~~~v~~~~~~~~~~~~~----------------------- 57 (254)
T TIGR00097 1 ALTIAGSDSGGGAGIQADLKTFSALGVFGTSVITALTAQNTRGVTGVYPIPPDFVEA----------------------- 57 (254)
T ss_pred CEEEeeeCCCcHHHHHHHHHHHHHcCCeecceeEEEEeEcCcceEEEEECCHHHHHH-----------------------
Confidence 699999999999999999999887 78999999999988764 3444555432
Q ss_pred hHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCC-CEEEeCCccc-----ccccc-h-hhhcc-CC-CeeE
Q 017155 162 ILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNV-PIVIDGDGLF-----LVTNS-I-DLVSG-YP-LAVL 231 (376)
Q Consensus 162 ~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~-pvVLDpdgl~-----ll~~~-~-~ll~~-~~-~~vI 231 (376)
+++.+.+.+ ++++++|| |..+.+..+.+.+. +++.+. |+|+||+... +.... . .+.+. .+ +++|
T Consensus 58 q~~~~~~d~-~~~aikiG--~l~~~~~~~~i~~~---~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvi 131 (254)
T TIGR00097 58 QLDAVFSDI-PVDAAKTG--MLASAEIVEAVARK---LREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLI 131 (254)
T ss_pred HHHHHHhCC-CCCEEEEC--CcCCHHHHHHHHHH---HHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEe
Confidence 233333322 56888887 44565544444444 445677 7999998532 22211 0 11222 23 7999
Q ss_pred cCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEcCCeEEEEeeCCCCC-CCCCchH
Q 017155 232 TPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISDGEIAKSVSIYGSPR-RCGGQGD 303 (376)
Q Consensus 232 TPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~-------~vi~~~~~~~~i~~~g~~~-~t~GsGD 303 (376)
|||..|++.|+|.+.. +..+..+.++.+.+. ++..|++||.+ ++++++++.+++.....+. .++|+||
T Consensus 132 tpN~~Ea~~L~g~~~~---~~~~~~~~a~~l~~~-g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD 207 (254)
T TIGR00097 132 TPNLPEAEALLGTKIR---TEQDMIKAAKKLREL-GPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGC 207 (254)
T ss_pred cCCHHHHHHHhCCCCC---CHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHH
Confidence 9999999999986421 224566778888764 44567778764 5667666555454222222 4899999
Q ss_pred HHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHH
Q 017155 304 ILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLA 348 (376)
Q Consensus 304 vLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a 348 (376)
+|++.++++++ +|+++ .+|+..|..+...+-+.+
T Consensus 208 ~f~aalaa~la---~g~~l--------~eA~~~A~~~~~~~i~~~ 241 (254)
T TIGR00097 208 TLSAAIAANLA---KGLSL--------KEAVKEAKEFVTGAIRYG 241 (254)
T ss_pred HHHHHHHHHHH---CCCCH--------HHHHHHHHHHHHHHHHHh
Confidence 99999999999 88775 466666665555555444
No 15
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.89 E-value=6.6e-22 Score=189.87 Aligned_cols=222 Identities=19% Similarity=0.201 Sum_probs=147.8
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCccc----ccccCCceeeecccccccccCCCchhhhh
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPV----IKSYSPELIVHPILEESYNISGLEDEERR 156 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~----i~~~~pe~~~~~~~~~~~~~~~~~~~~~~ 156 (376)
..+||+|||||+.+|||++||++++.+ |+..+|++|+|+...+ +.+.++|.+..
T Consensus 3 ~~~vl~iaG~D~sggaGi~aD~~t~~~~g~~~~~~~T~~t~q~~~~~~~~~v~~~~~~~i~~------------------ 64 (270)
T PRK12616 3 MHKALTIAGSDSSGGAGIQADLKTFQEKNVYGMTALTVVVAMDPENSWDHQVFPIDTDTIRA------------------ 64 (270)
T ss_pred CCeEEEEEeeCCCchHHHHHHHHHHHHcCCcccceeeEEeeEeCCCcceeEEEECCHHHHHH------------------
Confidence 358999999999999999999999888 8899999999998753 23344444432
Q ss_pred hhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc-----ccccc--hhhhcc-CC-
Q 017155 157 CISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-----LVTNS--IDLVSG-YP- 227 (376)
Q Consensus 157 ~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~-----ll~~~--~~ll~~-~~- 227 (376)
+++.+.+.+ ++|+|++|+ ..+.+..+.+.+.++.. ...|+|+||+... ++... ..+.+. .+
T Consensus 65 -----ql~~l~~d~-~~~aikiG~--l~s~~~i~~i~~~l~~~--~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~ 134 (270)
T PRK12616 65 -----QLSTIVDGI-GVDAMKTGM--LPTVDIIELAADTIKEK--QLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPL 134 (270)
T ss_pred -----HHHHHHcCC-CCCEEEECC--CCCHHHHHHHHHHHHhc--CCCCEEEccceecCCCCcccCHHHHHHHHHHhhcc
Confidence 233343332 689999984 45666667776666543 2247999999642 11111 112222 33
Q ss_pred CeeEcCCHHHHHHHhcc-cccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEeeCCCCC-C
Q 017155 228 LAVLTPNVNEYKRLVQK-VLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSIYGSPR-R 297 (376)
Q Consensus 228 ~~vITPN~~E~~~L~g~-~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~--------~vi~~~~~~~~i~~~g~~~-~ 297 (376)
.++||||..|++.|+|. ... +.++..+.++.+.+. ++..|++||.+ +++++++..+++...-.+. .
T Consensus 135 advitpN~~Ea~~L~g~~~~~---~~~~~~~aa~~l~~~-G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (270)
T PRK12616 135 ATVITPNLFEAGQLSGMGEIK---TVEQMKEAAKKIHEL-GAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPY 210 (270)
T ss_pred ceEecCCHHHHHHHcCCCCCC---CHHHHHHHHHHHHHc-CCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCC
Confidence 79999999999999985 211 224566777887764 44566777753 3566666544444222222 4
Q ss_pred CCCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHh
Q 017155 298 CGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAF 349 (376)
Q Consensus 298 t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~ 349 (376)
++|+||+|++.+++.++ +|+++ ..|+..|..+...+=+.+.
T Consensus 211 t~GaGD~fsaalaa~l~---~g~~l--------~~Av~~A~~~~~~~i~~s~ 251 (270)
T PRK12616 211 THGAGCTFSAAVTAELA---KGSEV--------KEAIYAAKEFITAAIKESF 251 (270)
T ss_pred CCcHHHHHHHHHHHHHH---CCCCH--------HHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999 88775 4666666655555555443
No 16
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.88 E-value=3.3e-21 Score=183.89 Aligned_cols=222 Identities=23% Similarity=0.299 Sum_probs=148.5
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccc--cccCCceeeecccccccccCCCchhhhhhh
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNISGLEDEERRCI 158 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i--~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~ 158 (376)
...||+|+|+|+++|||++||+.++++ |++++|+++.|+...+. ....+|.+..
T Consensus 4 ~~~vl~i~g~d~~ggaG~~adi~~~~~~g~~~~~v~Ta~~~q~~~~~~~~~~~~~~~~~~-------------------- 63 (266)
T PRK06427 4 RPIALTIAGSDSGGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVQRVHPIPPEFVAA-------------------- 63 (266)
T ss_pred CCEEEEEeecCCCCcHHHHHHHHHHHHcCCEEeeeeeEEEeecCCCeeEEEeCCHHHHHH--------------------
Confidence 468999999999999999999999994 88999999998865532 2333333321
Q ss_pred hhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC-CCEEEeCCccc-----ccccc--hhhhcc-CC-C
Q 017155 159 SSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN-VPIVIDGDGLF-----LVTNS--IDLVSG-YP-L 228 (376)
Q Consensus 159 ~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~-~pvVLDpdgl~-----ll~~~--~~ll~~-~~-~ 228 (376)
+++.+.+.+ ++|++++|+ ++ +.+..+.+.+.++ +.+ .|+|+||+... +.... ..+.++ .+ .
T Consensus 64 ---q~~~~~~~~-~~~ai~iG~-l~-~~~~~~~i~~~~~---~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~ 134 (266)
T PRK06427 64 ---QLDAVFSDI-RIDAVKIGM-LA-SAEIIETVAEALK---RYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLA 134 (266)
T ss_pred ---HHHHHHhcC-CCCEEEECC-cC-CHHHHHHHHHHHH---hCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcC
Confidence 233343332 789999996 44 5655555555554 344 48999998542 11110 112222 33 7
Q ss_pred eeEcCCHHHHHHHhcccccCCCCCCc-HHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEeeCCCCC-CC
Q 017155 229 AVLTPNVNEYKRLVQKVLNCEVNDRD-APELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSIYGSPR-RC 298 (376)
Q Consensus 229 ~vITPN~~E~~~L~g~~~~~~v~~~d-~~~~a~~la~~~~~~vVllKG~~--------~vi~~~~~~~~i~~~g~~~-~t 298 (376)
+|||||..|++.|+|.+.. +.++ ..+.++++.+. +...|++||.+ ++++++++.+.+.....+. .+
T Consensus 135 dvitpN~~Ea~~L~g~~~~---~~~~~~~~~a~~l~~~-g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (266)
T PRK06427 135 TLITPNLPEAEALTGLPIA---DTEDEMKAAARALHAL-GCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNT 210 (266)
T ss_pred eEEcCCHHHHHHHhCCCCC---CcHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCC
Confidence 9999999999999986531 1223 56778888765 44567778775 3666666555444222233 58
Q ss_pred CCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhh
Q 017155 299 GGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFK 350 (376)
Q Consensus 299 ~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~ 350 (376)
+|+||+|+|.+++.++ +|.++ ..|+..|..+...+-+.+.+
T Consensus 211 ~GaGD~f~a~l~~~l~---~g~~l--------~~A~~~A~~~~~~~i~~~~~ 251 (266)
T PRK06427 211 HGTGCTLSAAIAAELA---KGASL--------LDAVQTAKDYVTRAIRHALE 251 (266)
T ss_pred CChHHHHHHHHHHHHH---CCCCH--------HHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999 88775 46677776666666665543
No 17
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.88 E-value=1.2e-21 Score=183.81 Aligned_cols=213 Identities=20% Similarity=0.247 Sum_probs=141.9
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccc--cccCCceeeecccccccccCCCchhhhhhhhh
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNISGLEDEERRCISS 160 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i--~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (376)
+||+|||||+++||+++||+.++.+ +++++|+++.|+...+. ...+||.+.
T Consensus 1 ~vl~i~g~d~~ggag~~adi~~~~~~g~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~----------------------- 57 (242)
T cd01169 1 VVLTIAGSDSSGGAGIQADLKTFAALGVYGMSVITALTAQNTLGVFGVHPVPPEFVA----------------------- 57 (242)
T ss_pred CEEEEeeeCCCCHHHHHHHHHHHHHcCCEecceeEEEEeEcCcceeEEEECCHHHHH-----------------------
Confidence 4899999999999999999999998 88999999999976432 222333322
Q ss_pred hhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccc-----cccc-h-hhhcc-CC-CeeE
Q 017155 161 KILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFL-----VTNS-I-DLVSG-YP-LAVL 231 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~l-----l~~~-~-~ll~~-~~-~~vI 231 (376)
++++.+.+. .++|++++| +..+.+..+.+.++++.. .++|+|+||+.... .... . .+.+. .+ .++|
T Consensus 58 ~~l~~~~~~-~~~~~i~~G--~l~~~~~~~~i~~~~~~~--~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvi 132 (242)
T cd01169 58 AQLDAVLED-IPVDAIKIG--MLGSAEIIEAVAEALKDY--PDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLI 132 (242)
T ss_pred HHHHHHHhC-CCCCEEEEC--CCCCHHHHHHHHHHHHhC--CCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEE
Confidence 123333332 268999997 555676666666665432 37899999986421 1110 1 12222 23 7999
Q ss_pred cCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEcCCeEEEEeeCCCC-CCCCCchH
Q 017155 232 TPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISDGEIAKSVSIYGSP-RRCGGQGD 303 (376)
Q Consensus 232 TPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~-------~vi~~~~~~~~i~~~g~~-~~t~GsGD 303 (376)
|||..|+++|+|.... +..+..+.++.+.+.. ...|++||.+ ++++++++.+++.....+ ..++|+||
T Consensus 133 tpN~~Ea~~L~g~~~~---~~~~~~~~~~~l~~~g-~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD 208 (242)
T cd01169 133 TPNLPEAELLTGLEIA---TEEDMMKAAKALLALG-AKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGC 208 (242)
T ss_pred eCCHHHHHHHhCCCCC---CHHHHHHHHHHHHhcC-CCEEEEecCCCCCCceeEEEEECCcEEEEecceeCCCCCCChHH
Confidence 9999999999986431 2234556677777654 3566777764 356666555555433332 35899999
Q ss_pred HHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHH
Q 017155 304 ILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLR 342 (376)
Q Consensus 304 vLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~ 342 (376)
+|+|.+++.++ +|+++ ..|+..|..+..
T Consensus 209 ~f~a~l~a~l~---~g~~~--------~~A~~~A~~~~~ 236 (242)
T cd01169 209 TLSSAIAANLA---KGLSL--------EEAVREAKEYVT 236 (242)
T ss_pred HHHHHHHHHHH---CCCCH--------HHHHHHHHHHHH
Confidence 99999999999 88775 356655554443
No 18
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.88 E-value=6.5e-21 Score=182.76 Aligned_cols=216 Identities=20% Similarity=0.214 Sum_probs=141.8
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcc--c--ccccCCceeeecccccccccCCCchhhhhh
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAP--V--IKSYSPELIVHPILEESYNISGLEDEERRC 157 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~--~--i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~ 157 (376)
++||+|||||+++|||++||+.++.+ |+..+|++|.|+... + +.+..+|.+.
T Consensus 2 ~~vl~iag~D~sggaGi~aD~~t~~~lg~~~~~v~Ta~t~q~~~~~~~~~v~~~~~~~i~-------------------- 61 (268)
T PRK12412 2 NKALTIAGSDTSGGAGIQADLKTFQELGVYGMTSLTTIVTMDPHNGWAHNVFPIPASTLK-------------------- 61 (268)
T ss_pred CeEEEEEeeCCCchHHHHHHHHHHHHcCCeeceeeeEEEeEcCCCCcEEEEEeCCHHHHH--------------------
Confidence 58999999999999999999998887 779999999998653 2 2233333332
Q ss_pred hhhhhHHHHHHhhc--cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCC-EEEeCCccc-----ccccc--hhhhcc-C
Q 017155 158 ISSKILAEVDKWME--RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVP-IVIDGDGLF-----LVTNS--IDLVSG-Y 226 (376)
Q Consensus 158 ~~~~~~~~l~~~l~--~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~p-vVLDpdgl~-----ll~~~--~~ll~~-~ 226 (376)
++++.+++ ++|++++|+ ..+.+..+.+.+.++ +.+.+ +|+||+... ++... ..+.+. .
T Consensus 62 ------~q~~~l~~d~~~~~ikiG~--l~~~~~v~~i~~~~~---~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll 130 (268)
T PRK12412 62 ------PQLETTIEGVGVDALKTGM--LGSVEIIEMVAETIE---KHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLV 130 (268)
T ss_pred ------HHHHHHHhCCCCCEEEECC--CCCHHHHHHHHHHHH---hcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhh
Confidence 23333444 489999985 446565555555554 44554 999998642 11111 112222 3
Q ss_pred C-CeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEeeCCCCC-
Q 017155 227 P-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSIYGSPR- 296 (376)
Q Consensus 227 ~-~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~--------~vi~~~~~~~~i~~~g~~~- 296 (376)
+ .++||||..|++.|+|.+.. +.++..++++++.+. ++..|++|+.+ +++++++..+.+.....+.
T Consensus 131 ~~advitpN~~Ea~~L~g~~~~---~~~~~~~aa~~l~~~-g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~ 206 (268)
T PRK12412 131 PKALVVTPNLFEAYQLSGVKIN---SLEDMKEAAKKIHAL-GAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTT 206 (268)
T ss_pred ccceEEcCCHHHHHHHhCcCCC---CHHHHHHHHHHHHhc-CCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCC
Confidence 3 79999999999999986431 224667788888764 44566777754 3555655544444222222
Q ss_pred CCCCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHH
Q 017155 297 RCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASL 347 (376)
Q Consensus 297 ~t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~ 347 (376)
.++|+||+|++.+++.++ +|+++ .+|+..|..+...+-+.
T Consensus 207 ~t~GaGD~f~aa~aa~l~---~g~~l--------~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 207 NTHGAGCTYSAAITAELA---KGKPV--------KEAVKTAKEFITAAIRY 246 (268)
T ss_pred CCCchHHHHHHHHHHHHH---CCCCH--------HHHHHHHHHHHHHHHHH
Confidence 479999999999999999 88775 35555554444433333
No 19
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.87 E-value=6.3e-21 Score=198.08 Aligned_cols=225 Identities=18% Similarity=0.195 Sum_probs=145.6
Q ss_pred CCCCCCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCccccc--ccCCceeeecccccccccCCCchhh
Q 017155 81 HKGQAGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIK--SYSPELIVHPILEESYNISGLEDEE 154 (376)
Q Consensus 81 hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i~--~~~pe~~~~~~~~~~~~~~~~~~~~ 154 (376)
.|.++|+||+|||||+++|||++||+.++.+ |+.++|++|.|+...+.. ...++.+.
T Consensus 5 ~~~~~~~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~~~~~~~~~~~----------------- 67 (502)
T PLN02898 5 SPMKVPHVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQGVHAVPLDFVA----------------- 67 (502)
T ss_pred CCCCCCeEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCccceeeeCCHHHHH-----------------
Confidence 3445899999999999999999999887776 667888888888765422 23333321
Q ss_pred hhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCC-CEEEeCCccc-----ccccc-hhhh-cc-
Q 017155 155 RRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNV-PIVIDGDGLF-----LVTNS-IDLV-SG- 225 (376)
Q Consensus 155 ~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~-pvVLDpdgl~-----ll~~~-~~ll-~~- 225 (376)
++++.+.+.+ ++++|++|+ ..+.+..+.+.+.+ ++.+. |+|+||+... ++... .+.+ +.
T Consensus 68 ------~ql~~~~~d~-~~~aik~G~--l~~~~~i~~i~~~l---~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~L 135 (502)
T PLN02898 68 ------EQLKSVLSDM-PVDVVKTGM--LPSAEIVKVLCQAL---KEFPVKALVVDPVMVSTSGDVLAGPSILSALREEL 135 (502)
T ss_pred ------HHHHHHHhCC-CCCEEEECC--cCCHHHHHHHHHHH---HhCCCCCEEEccccccCCCCccCCHHHHHHHHHhh
Confidence 1233333221 577888874 44565555555544 34455 5999998532 22211 1112 12
Q ss_pred CC-CeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEeeCCCC-
Q 017155 226 YP-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSIYGSP- 295 (376)
Q Consensus 226 ~~-~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~--------~vi~~~~~~~~i~~~g~~- 295 (376)
.+ +++||||..|++.|+|.... .+.++..+.++++.+. ++..|++||.+ +++++++..+++.....+
T Consensus 136 l~~adiitPN~~Ea~~L~g~~~~--~~~~~~~~~a~~l~~~-G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 212 (502)
T PLN02898 136 LPLATIVTPNVKEASALLGGDPL--ETVADMRSAAKELHKL-GPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKT 212 (502)
T ss_pred hccCeEEcCCHHHHHHHhCCCCC--CCHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCC
Confidence 34 79999999999999974311 0224566777888764 44567788864 466666654444422222
Q ss_pred CCCCCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHH
Q 017155 296 RRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLA 348 (376)
Q Consensus 296 ~~t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a 348 (376)
..++|+||+|+++++++++ +|+++ .+|+..|..+...+=+.+
T Consensus 213 ~~t~GaGD~fsaaiaa~l~---~G~~l--------~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 213 RNTHGTGCTLASCIAAELA---KGSDM--------LSAVKVAKRYVETALEYS 254 (502)
T ss_pred CCCCchhhhHHHHHHHHHH---cCCCH--------HHHHHHHHHHHHHHHHhh
Confidence 2589999999999999999 88875 466666766665555444
No 20
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.87 E-value=2.6e-21 Score=190.63 Aligned_cols=231 Identities=19% Similarity=0.292 Sum_probs=159.5
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccc--cccCCceeeeccccccccc
Q 017155 74 PVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNI 147 (376)
Q Consensus 74 p~r~~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i--~~~~pe~~~~~~~~~~~~~ 147 (376)
|+-.....+..-+.+|+|||||..+|||++||+..+-+ |...+|++|.|+..++. ....||.+..
T Consensus 12 ~~~~t~~~~~~lPt~LTIAGSDcSGGAGIqADlKv~TAh~vYgMS~iTaltaQn~~gV~sv~~lpp~~V~q--------- 82 (523)
T KOG2598|consen 12 PPMLTTASNRKLPTVLTIAGSDCSGGAGIQADLKVMTAHGVYGMSVITALTAQNTVGVYSVHLLPPSFVSQ--------- 82 (523)
T ss_pred CchhhhhhhccCCeeEEEecCCCCCcccchhhhhhhhhhccchhhhhhhhhccCCccceeeccCCHHHHHH---------
Confidence 33344555666799999999999999999999976655 88999999999998864 4556666532
Q ss_pred CCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccc---h---h
Q 017155 148 SGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNS---I---D 221 (376)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~---~---~ 221 (376)
+++..+.+..+=||..||..+.+.+.++.+.++.. +-..+|+||+.+.-.... . .
T Consensus 83 -----------------qidacL~Di~C~VvKTGML~~~~I~~vi~q~l~~~--~~~klVvDPVivatsG~~l~~~divs 143 (523)
T KOG2598|consen 83 -----------------QIDACLSDIKCDVVKTGMLPSPEIVKVIEQSLQKF--NIPKLVVDPVIVATSGSSLAGKDIVS 143 (523)
T ss_pred -----------------HHHHHhhcCcccEEeecCcCchHHHHHHHHHHHhh--cCcceeecceEEeccCCcccCCccHH
Confidence 34444444444444445777888888888888763 334699999976422111 1 1
Q ss_pred h-hcc-CC-CeeEcCCHHHHHHHhcccccCCCCC-C---cHHHHHHHHHHhhCCeEEEEcCCc-----------------
Q 017155 222 L-VSG-YP-LAVLTPNVNEYKRLVQKVLNCEVND-R---DAPELLQSLAKQIGGVTILQKGKS----------------- 277 (376)
Q Consensus 222 l-l~~-~~-~~vITPN~~E~~~L~g~~~~~~v~~-~---d~~~~a~~la~~~~~~vVllKG~~----------------- 277 (376)
+ .++ .| .+|+|||..|+-.|++.. +.++.. + |+...+.++.+ .++..|++||++
T Consensus 144 l~~e~l~P~adiltPNI~Ea~~Ll~~~-~~~~~~i~~v~di~~~~~~ihk-~gpk~VlvkGghiP~~~~~~~s~d~~~~~ 221 (523)
T KOG2598|consen 144 LFIEELLPFADILTPNIPEAFILLKKE-KREISKIQSVFDIAKDAAKIHK-LGPKNVLVKGGHIPFNKNMMTSKDDSDKY 221 (523)
T ss_pred HHHHHhhhhHHHhCCChHHHHHHHhhc-ccCCcccccHHHHHHHHHHHHh-cCcceEEEeCCCcCccccccccCcccCCc
Confidence 2 222 45 689999999999999852 222222 2 44445555555 455689999975
Q ss_pred --eEEEcCCeEEEEeeCCCC---CCCCCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHH
Q 017155 278 --DLISDGEIAKSVSIYGSP---RRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASL 347 (376)
Q Consensus 278 --~vi~~~~~~~~i~~~g~~---~~t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~ 347 (376)
|+++++++++.+. ++. ..++|+||+||++||+.|| .|+++ ..|+..|..+...|-++
T Consensus 222 ~~DvlydG~~F~~f~--~~~~~t~~tHGtgCtLaSAIASnLA---~g~sl--------~qAv~~ai~yvq~Ai~~ 283 (523)
T KOG2598|consen 222 TVDVLYDGKEFYIFK--SPYLATKHTHGTGCTLASAIASNLA---RGYSL--------LQAVQGAIEYVQNAIAI 283 (523)
T ss_pred eEEEEEecceEEEec--ccccccccccCccchHHHHHHHHHh---hcCCH--------HHHHHHHHHHHHHHHHh
Confidence 4677887766564 322 2599999999999999999 89886 47777777766666554
No 21
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.87 E-value=2.5e-20 Score=191.05 Aligned_cols=244 Identities=20% Similarity=0.225 Sum_probs=160.4
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccc--cccCCceeeecccccccccCCCchhhhhhhh
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNISGLEDEERRCIS 159 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i--~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (376)
+.||+|||||+.+|||++||+.++.+ |+.++|++|.|+...+. ....|+++.
T Consensus 3 ~~vltiaG~D~~ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~~---------------------- 60 (448)
T PRK08573 3 PVALTIAGSDSGGGAGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAIHDLPPEVVA---------------------- 60 (448)
T ss_pred CEEEEEeeeCCCCHHHHHHHHHHHHHcCCeecccceEEEeecCCCceEEEECCHHHHH----------------------
Confidence 58999999999999999999998887 88999999999986643 233333321
Q ss_pred hhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcc-----cccccc--hhhhcc-CC-Cee
Q 017155 160 SKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL-----FLVTNS--IDLVSG-YP-LAV 230 (376)
Q Consensus 160 ~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl-----~ll~~~--~~ll~~-~~-~~v 230 (376)
++++.+.+.+ +.+++++|+ + .+. +.+..+++.+++.++++|+||+.. .+.... ..+.+. .+ .++
T Consensus 61 -~q~~a~~~d~-~~~~ik~G~-l-~~~---e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adl 133 (448)
T PRK08573 61 -AQIEAVWEDM-GIDAAKTGM-L-SNR---EIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATV 133 (448)
T ss_pred -HHHHHHHhcC-CCCEEEECC-c-CCH---HHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEE
Confidence 2234444333 357888875 4 343 346666666777899999999743 222211 012222 23 699
Q ss_pred EcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEcCCeEEEEeeCCCC-CCCCCch
Q 017155 231 LTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISDGEIAKSVSIYGSP-RRCGGQG 302 (376)
Q Consensus 231 ITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~-------~vi~~~~~~~~i~~~g~~-~~t~GsG 302 (376)
||||..|++.|+|.+.. +.++..++++++.++++...|++||.+ +++++++..+.+.....+ ..++|+|
T Consensus 134 i~pN~~Ea~~L~g~~i~---~~~d~~~aa~~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAG 210 (448)
T PRK08573 134 VTPNRPEAEKLTGMKIR---SVEDARKAAKYIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTG 210 (448)
T ss_pred EcCCHHHHHHHhCCCCC---CHHHHHHHHHHHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChH
Confidence 99999999999986531 224667788888765565566777653 255555555444422222 2489999
Q ss_pred HHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhc-CCCCCc-----------HHHHHHHHHHHHH
Q 017155 303 DILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKD-KKRSTL-----------TTDIIECLGRSLE 370 (376)
Q Consensus 303 DvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~-~~~~~~-----------a~dii~~l~~~~~ 370 (376)
|+|++.+++.++ +|+++ ..|+..|..+...+-+...+- .+++.. -.++++.+.++++
T Consensus 211 DaFsAa~aa~l~---~G~~l--------~eAl~~A~~~~~~al~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 279 (448)
T PRK08573 211 CSFSAAIAAGLA---KGLDP--------EEAIKTAKKFITMAIKYGVKIGKGHCPVNPMAWIEIPAERWRAYEELEEALE 279 (448)
T ss_pred HHHHHHHHHHHH---cCCCH--------HHHHHHHHHHHHHHHHHhhccCCCCCCcchhHHhhchHHHHHHHHHHHHHHH
Confidence 999999999999 88775 466677766665555543221 122111 3367777777777
Q ss_pred hh
Q 017155 371 DI 372 (376)
Q Consensus 371 ~l 372 (376)
.|
T Consensus 280 ~l 281 (448)
T PRK08573 280 EI 281 (448)
T ss_pred HH
Confidence 65
No 22
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.86 E-value=1e-20 Score=204.79 Aligned_cols=228 Identities=17% Similarity=0.187 Sum_probs=153.5
Q ss_pred CCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccc--cccCCceeeecccccccccCCCch
Q 017155 79 SKHKGQAGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNISGLED 152 (376)
Q Consensus 79 ~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i--~~~~pe~~~~~~~~~~~~~~~~~~ 152 (376)
++.--..+.||+|||||+++|||++||+.++.+ |++.+|++|.|+...+. ...+||.+..|
T Consensus 235 ~~~~~~~~~vLtIaGsD~sggAGi~aDlkt~~alg~~~~~viTaltaQn~~~v~~v~~~~~~~v~~Q------------- 301 (755)
T PRK09517 235 FVNSPSAPRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTALVAQNTHGVNTIHTPPLTFLEEQ------------- 301 (755)
T ss_pred ccccCCCCeEEEEeccCCCcHHHHHHHHHHHHHcCCcccchheeEeeEcccceeEEeeCCHHHHHHH-------------
Confidence 334445589999999999999999999998887 78999999999988763 44555554322
Q ss_pred hhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc-----ccccc-hhhhcc-
Q 017155 153 EERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-----LVTNS-IDLVSG- 225 (376)
Q Consensus 153 ~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~-----ll~~~-~~ll~~- 225 (376)
++.+.+.+ ++++|+||+ + .+.+..+.+.+.++.. .+.|+|+||+... ++... .+.+++
T Consensus 302 ----------l~~~~~d~-~~~aiKiGm-L-~s~e~v~~i~~~l~~~--~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~L 366 (755)
T PRK09517 302 ----------LEAVFSDV-TVDAVKLGM-L-GSADTVDLVASWLGSH--EHGPVVLDPVMVATSGDRLLDADATEALRRL 366 (755)
T ss_pred ----------HHHHHcCC-CCCEEEECC-C-CCHHHHHHHHHHHHhC--CCCCEEEecccccCCCCCCCCHHHHHHHHHH
Confidence 23333322 579999986 5 4556556666555432 3568999998642 22211 111222
Q ss_pred CC-CeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEc-CCeEEEEeeCCCC-
Q 017155 226 YP-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISD-GEIAKSVSIYGSP- 295 (376)
Q Consensus 226 ~~-~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~-------~vi~~-~~~~~~i~~~g~~- 295 (376)
.+ ++|||||..|++.|+|.... .+.++..+.++++.++.++ .|++||++ ++++. ++..+.+.....+
T Consensus 367 lp~adlItPN~~Ea~~L~g~~~~--~~~~d~~~aa~~L~~~~g~-~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~ 443 (755)
T PRK09517 367 AVHVDVVTPNIPELAVLCGEAPA--ITMDEAIAQARGFARTHGT-IVIVKGGHLTGDLADNAVVRPDGSVHQVENPRVNT 443 (755)
T ss_pred hCcccCccCCHHHHHHHhCCCCC--CCHHHHHHHHHHHHHhcCC-EEEEcCCcCCCCccceEEEeCCCeEEEEeecccCC
Confidence 34 79999999999999985311 1224667788888876664 67778873 45554 3334444422222
Q ss_pred CCCCCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHH
Q 017155 296 RRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLA 348 (376)
Q Consensus 296 ~~t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a 348 (376)
..++|+||+|++.|+++++ +|.++ ..|+..|..+...+-+.+
T Consensus 444 ~~t~GaGDtfsaaiaa~La---~G~sl--------~eAv~~A~~~v~~~i~~a 485 (755)
T PRK09517 444 TNSHGTGCSLSAALATLIA---AGESV--------EKALEWATRWLNEALRHA 485 (755)
T ss_pred CCCcChHHHHHHHHHHHHH---CCCCH--------HHHHHHHHHHHHHHHHhc
Confidence 2589999999999999999 99875 466776766665555554
No 23
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.84 E-value=7.2e-20 Score=190.23 Aligned_cols=220 Identities=20% Similarity=0.261 Sum_probs=144.2
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCccccc--ccCCceeeecccccccccCCCchhhhh
Q 017155 83 GQAGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIK--SYSPELIVHPILEESYNISGLEDEERR 156 (376)
Q Consensus 83 g~~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i~--~~~pe~~~~~~~~~~~~~~~~~~~~~~ 156 (376)
...++||+|+|+|+++|||++||+.++.+ |++.+|++|.|+...+.. ..+++.+.
T Consensus 228 ~~~~~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~~vta~t~qn~~~~~~~~~~~~~~~~------------------- 288 (504)
T PTZ00347 228 MKIPTVLTVSGSDSGGGAGHQADLKTLEALGVYSTSALTSLTAQNTKGVQQIQVVNEDFFA------------------- 288 (504)
T ss_pred CCCCeEEEEeCcCCCChHHHHHHHHHHHHcCCcccchheeEEeEcCcceeeEEeCCHHHHH-------------------
Confidence 33679999999999999999999998887 668999999999877542 22333322
Q ss_pred hhhhhhHHHHHHhhcc--CCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc-----ccccc--hhh---hc
Q 017155 157 CISSKILAEVDKWMER--FDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-----LVTNS--IDL---VS 224 (376)
Q Consensus 157 ~~~~~~~~~l~~~l~~--~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~-----ll~~~--~~l---l~ 224 (376)
++++.++++ +++|++| +..+.+..+.+.+.++ +.|+|+||+... +.... .++ ++
T Consensus 289 -------~ql~~l~~d~~~~~Ik~G--~l~s~e~i~~i~~~l~-----~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~ 354 (504)
T PTZ00347 289 -------AQIDSVMSDFNISVVKLG--LVPTARQLEIVIEKLK-----NLPMVVDPVLVATSGDDLVAQKNADDVLAMYK 354 (504)
T ss_pred -------HHHHHHHhCCCCCEEEEC--CcCCHHHHHHHHHHhc-----CCCEEEcccceeCCCCcccchhHHHHHHHHHH
Confidence 344444554 5566665 5556665555555442 578999998642 22110 111 11
Q ss_pred -c-CC-CeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc---------eEEEcC--CeEEEEe
Q 017155 225 -G-YP-LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS---------DLISDG--EIAKSVS 290 (376)
Q Consensus 225 -~-~~-~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~---------~vi~~~--~~~~~i~ 290 (376)
+ .+ .+|||||..|++.|+|.... .+.++..++++.+.+ .|...|++||++ ++++++ +..+.+.
T Consensus 355 ~~Ll~~advitPN~~Ea~~L~g~~~~--~~~~~~~~aa~~l~~-~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~ 431 (504)
T PTZ00347 355 ERIFPMATIITPNIPEAERILGRKEI--TGVYEARAAAQALAQ-YGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFT 431 (504)
T ss_pred HhccCcceEEeCCHHHHHHHhCCCCC--CCHHHHHHHHHHHHh-cCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEE
Confidence 2 34 69999999999999985310 122356677788876 454567778765 466653 3444443
Q ss_pred eCCCC-CCCCCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHh
Q 017155 291 IYGSP-RRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAF 349 (376)
Q Consensus 291 ~~g~~-~~t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~ 349 (376)
....+ ..++|+||+|+|.+++.++ +|.++ ..|+..|..+...+-+.+.
T Consensus 432 ~~~i~~~~~~GaGD~fsaaiaa~la---~G~~l--------~eAv~~A~~~v~~~i~~~~ 480 (504)
T PTZ00347 432 ANRIATINTHGTGCTLASAISSFLA---RGYTV--------PDAVERAIGYVHEAIVRSC 480 (504)
T ss_pred eeeECCCCCCChHHHHHHHHHHHHh---CCCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 22222 2589999999999999999 88775 4666667555555554443
No 24
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.84 E-value=4.8e-20 Score=192.61 Aligned_cols=222 Identities=20% Similarity=0.233 Sum_probs=149.4
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccc--cccCCceeeecccccccccCCCchhhhh
Q 017155 83 GQAGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNISGLEDEERR 156 (376)
Q Consensus 83 g~~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i--~~~~pe~~~~~~~~~~~~~~~~~~~~~~ 156 (376)
....+||+|+|+|+++|||++||+.++.+ |+.++|++|.|+...+. ....+|.+..
T Consensus 27 ~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v~Talt~q~t~~v~~v~~~~~~~i~~------------------ 88 (530)
T PRK14713 27 AATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAVITALVAQNTRGVRAVHVPPADFLRA------------------ 88 (530)
T ss_pred CCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecchhheEeeecCcceeeeccCCHHHHHH------------------
Confidence 34579999999999999999999998887 78999999999987643 3334444332
Q ss_pred hhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc-----ccccc-hhhhcc-CC-C
Q 017155 157 CISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-----LVTNS-IDLVSG-YP-L 228 (376)
Q Consensus 157 ~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~-----ll~~~-~~ll~~-~~-~ 228 (376)
+++.+.+.+ ++++|++| +..+.+..+.+.++++..+ ..++|+||+... +.... .+.+++ .+ +
T Consensus 89 -----ql~~l~~d~-~~~aikiG--~l~s~~~i~~v~~~l~~~~--~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~a 158 (530)
T PRK14713 89 -----QLDAVSDDV-TVDAVKIG--MLGDAEVIDAVRTWLAEHR--PPVVVLDPVMVATSGDRLLEEDAEAALRELVPRA 158 (530)
T ss_pred -----HHHHHHhCC-CCCEEEEC--CcCCHHHHHHHHHHHHhCC--CCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhh
Confidence 223333322 57999997 4556777888888886542 346999998642 22211 111212 34 7
Q ss_pred eeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEcCC-eEEEEeeCCCC-CCCC
Q 017155 229 AVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISDGE-IAKSVSIYGSP-RRCG 299 (376)
Q Consensus 229 ~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~-------~vi~~~~-~~~~i~~~g~~-~~t~ 299 (376)
+|||||..|++.|+|.+.. .+.++..+.++++.+..+ ..|++||++ ++++.++ ..+.+.....+ ..++
T Consensus 159 dvItPN~~Ea~~Ltg~~~~--~~~~d~~~aa~~L~~~~g-~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~ 235 (530)
T PRK14713 159 DLITPNLPELAVLLGEPPA--TTWEEALAQARRLAAETG-TTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTH 235 (530)
T ss_pred heecCChHHHHHHhCCCCC--CCHHHHHHHHHHHHHhcC-CEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCC
Confidence 9999999999999986421 122466777888887655 367778764 4566443 34444322222 2489
Q ss_pred CchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHH
Q 017155 300 GQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAAS 346 (376)
Q Consensus 300 GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~ 346 (376)
|+||+|+|.+++.++ +|.++ ..|+..|..+...+-.
T Consensus 236 GaGD~fsaalaa~La---~G~~l--------~eAv~~A~~~v~~~i~ 271 (530)
T PRK14713 236 GTGCSLSSALATRLG---RGGDW--------AAALRWATAWLHGAIA 271 (530)
T ss_pred cHHHHHHHHHHHHHH---CCCCH--------HHHHHHHHHHHHHHHH
Confidence 999999999999999 88875 4666666543333333
No 25
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.84 E-value=2.7e-20 Score=176.45 Aligned_cols=212 Identities=21% Similarity=0.311 Sum_probs=138.5
Q ss_pred CCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccc--cccCCceeeecccccccccCCCchhhhhhhhhhhHHHHHH
Q 017155 95 REYTGAPYFAAISALKI----GADLSHVFCTKDAAPVI--KSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDK 168 (376)
Q Consensus 95 ~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i--~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 168 (376)
|+.+|||++||+.++++ ++.++|+++.|+...+. ....+|.+. ++++.+.+
T Consensus 1 DpsggaGi~aDi~t~~a~G~~~~~v~Talt~qn~~~~~~~~~~~~~~~~-----------------------~ql~~~~~ 57 (246)
T PF08543_consen 1 DPSGGAGIQADIKTISALGVHGCPVPTALTSQNTYGVFDIEPVDSEMIK-----------------------AQLDALLE 57 (246)
T ss_dssp ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTEEEEEEE--HHHHH-----------------------HHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCccceEeEEEEecCCcceEEEEECCHHHHH-----------------------HHHHHhcc
Confidence 68899999999999888 78999999999876643 223333322 12333333
Q ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc-----ccccc-hh-hhcc-CC-CeeEcCCHHHHH
Q 017155 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-----LVTNS-ID-LVSG-YP-LAVLTPNVNEYK 239 (376)
Q Consensus 169 ~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~-----ll~~~-~~-ll~~-~~-~~vITPN~~E~~ 239 (376)
. -++|+|++|. ..+.+..+.+.++++. .+.++|+||+... ..... .+ +.+. .+ .+|||||..|++
T Consensus 58 ~-~~~~aikiG~--l~~~~~v~~i~~~l~~---~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~ 131 (246)
T PF08543_consen 58 D-MKFDAIKIGY--LGSAEQVEIIADFLKK---PKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAE 131 (246)
T ss_dssp T-SC-SEEEE-S---SSHHHHHHHHHHHHH---TTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHH
T ss_pred c-ccccEEEEcc--cCCchhhhhHHHHHhc---cCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHH
Confidence 2 2789999984 4577778888888753 5669999999652 11111 11 1111 34 799999999999
Q ss_pred HHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc---------eEEEcCCeEEEEeeCCCC-CCCCCchHHHHHHH
Q 017155 240 RLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS---------DLISDGEIAKSVSIYGSP-RRCGGQGDILSGSV 309 (376)
Q Consensus 240 ~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~---------~vi~~~~~~~~i~~~g~~-~~t~GsGDvLaG~I 309 (376)
.|+|.++. +.++..+++++|.+ .++..|++||.+ ++++++++.+.+.....+ ...+||||+||+++
T Consensus 132 ~L~g~~i~---~~~~~~~~~~~l~~-~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~l 207 (246)
T PF08543_consen 132 LLTGREIN---SEEDIEEAAKALLA-LGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSAL 207 (246)
T ss_dssp HHHTS--S---SHHHHHHHHHHHHH-TS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHH
T ss_pred HHhCCCCC---ChHhHHHHHHHHHH-hCCceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHH
Confidence 99996542 33577888899988 455677788864 345566666555433333 46999999999999
Q ss_pred HHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhh
Q 017155 310 AVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFK 350 (376)
Q Consensus 310 aa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~ 350 (376)
+++|+ +|+++ ..|+..|..+...+-+...+
T Consensus 208 aa~l~---~g~~l--------~~Av~~A~~~v~~~i~~t~~ 237 (246)
T PF08543_consen 208 AAFLA---KGYSL--------EEAVEKAKNFVRRAIKNTIQ 237 (246)
T ss_dssp HHHHH---TTSSH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---cCCCH--------HHHHHHHHHHHHHHHHHHhc
Confidence 99999 99876 47777776666666655443
No 26
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.83 E-value=7.1e-19 Score=166.63 Aligned_cols=223 Identities=19% Similarity=0.214 Sum_probs=139.6
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccccccCCceeeecccccccccCCCchhhhhhhh
Q 017155 84 QAGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCIS 159 (376)
Q Consensus 84 ~~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (376)
.+..||+|+|+|+.+|||++||+.++.+ |++.+|+++.++..+. ++ .+.+. +
T Consensus 2 ~~~~vl~iag~d~~ggaG~~aD~~~~~~~~~~~~~~~t~~t~~~~~G~------~v--~~~~~-------------~--- 57 (253)
T PRK12413 2 KTNYILAISGNDIFSGGGLHADLATYTRNGLHGFVAVTCLTAMTEKGF------EV--FPVDK-------------E--- 57 (253)
T ss_pred CCCeEEEEeeeCCCCHHHHHHHHHHHHHcCCccCeeeEEEecccCCce------EE--EECCH-------------H---
Confidence 3568999999999999999999999887 8889999998886652 11 11110 0
Q ss_pred hhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccc----cc--hhhhcc-CC-CeeE
Q 017155 160 SKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVT----NS--IDLVSG-YP-LAVL 231 (376)
Q Consensus 160 ~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~----~~--~~ll~~-~~-~~vI 231 (376)
...+++..+ .+.+..++..|+..+.+..+.+.++++. +.++++|+||+...-.. .. .+.++. .+ .++|
T Consensus 58 -~l~~~l~~l-~~~~~~~i~~G~l~~~~~~~~~~~~~~~--~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli 133 (253)
T PRK12413 58 -IFQQQLDSL-KDVPFSAIKIGLLPNVEIAEQALDFIKG--HPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVI 133 (253)
T ss_pred -HHHHHHHHh-hCCCCCEEEECCcCCHHHHHHHHHHHHh--CCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEE
Confidence 112233332 3344444443454455544555555542 36889999998653211 10 112222 33 5999
Q ss_pred cCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEeeCCCCCCCCCchH
Q 017155 232 TPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSIYGSPRRCGGQGD 303 (376)
Q Consensus 232 TPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~--------~vi~~~~~~~~i~~~g~~~~t~GsGD 303 (376)
|||..|++.|+|.+.. +.++..+.++++.+. +...|++|+.+ +++++++..+..........++|+||
T Consensus 134 ~pN~~E~~~L~g~~~~---~~~~~~~~a~~l~~~-g~~~Vvvt~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD 209 (253)
T PRK12413 134 TPNLVEAELLSGKEIK---TLEDMKEAAKKLYDL-GAKAVVIKGGNRLSQKKAIDLFYDGKEFVILESPVLEKNNIGAGC 209 (253)
T ss_pred CCCHHHHHHHhCcCCC---CHHHHHHHHHHHHHc-CCCEEEEeCCCCCCCCcceEEEEcCCEEEEEeecccCCCCCChHH
Confidence 9999999999986531 224566777888765 44456667653 35666665443322222235899999
Q ss_pred HHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHh
Q 017155 304 ILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAF 349 (376)
Q Consensus 304 vLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~ 349 (376)
.|+|.+++.++ +|+++ ..++..|..+...+=+.+.
T Consensus 210 af~a~~~~~l~---~g~~l--------~ea~~~A~~~~~~~l~~~~ 244 (253)
T PRK12413 210 TFASSIASQLV---KGKSP--------LEAVKNSKDFVYQAIQQSD 244 (253)
T ss_pred HHHHHHHHHHH---cCCCH--------HHHHHHHHHHHHHHHHHHH
Confidence 99999999888 88775 4666666555555554443
No 27
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.80 E-value=2.6e-18 Score=162.67 Aligned_cols=220 Identities=19% Similarity=0.119 Sum_probs=143.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccccccCCceeeecccccccccCCCchhhhhhhhhhh
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKI 162 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (376)
+||+|+|+++++||+++||+.++.+ ++.++|+++.|+...+... .|++. ++.. .+.
T Consensus 1 ~vl~i~~~~~~g~ag~~ad~~~~~~~g~~~~~~~T~~~~~~~~~~~~~-~~~~~---------------~~~~----~~~ 60 (254)
T cd01173 1 RVLSIQSHVVHGYVGNSAAVFPLQRLGWDVDALPTVQFSNHTGYGTWT-GFVLS---------------AEEL----EDL 60 (254)
T ss_pred CEEEEecceecceECCeeHHHHHHHcCCccceeCceecCCCCCCCCCC-CeecC---------------HHHH----HHH
Confidence 5899999999999999999998887 7789999999887643111 11110 0110 012
Q ss_pred HHHHHHhh--ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcC--CCCEEEeCCccc---c--cccc-hhhhcc--C-CCe
Q 017155 163 LAEVDKWM--ERFDCLVVGPGLGRDPYLLECVSEIMKHARQS--NVPIVIDGDGLF---L--VTNS-IDLVSG--Y-PLA 229 (376)
Q Consensus 163 ~~~l~~~l--~~~davvIGpGl~~~~~~~~~~~~il~~a~~~--~~pvVLDpdgl~---l--l~~~-~~ll~~--~-~~~ 229 (376)
++.+.+.. ..+++|++|. ..+.+..+.+.++++.+++. ++++|+||+... + .... .+.+.+ . .++
T Consensus 61 ~~~~~~~~~~~~~~~v~~G~--l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~d 138 (254)
T cd01173 61 LEGLEALGLLLEYDAVLTGY--LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLAD 138 (254)
T ss_pred HHHHHHcCCcccCCEEEEec--CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCC
Confidence 33344332 4689998884 44667788999999988766 789999997421 1 1111 111211 2 379
Q ss_pred eEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc--------eEEEcCCeEEEEeeCCCC--CCCC
Q 017155 230 VLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS--------DLISDGEIAKSVSIYGSP--RRCG 299 (376)
Q Consensus 230 vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~--------~vi~~~~~~~~i~~~g~~--~~t~ 299 (376)
|||||..|++.|+|.+.. +.++..+.++++.+.+ +..|++|+.+ .+++++++.+.+.....+ ..++
T Consensus 139 vi~pN~~Ea~~l~g~~~~---~~~~~~~~~~~l~~~g-~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 214 (254)
T cd01173 139 IITPNQFELELLTGKKIN---DLEDAKAAARALHAKG-PKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFN 214 (254)
T ss_pred EECCcHHHHHHHcCCCcC---CHHHHHHHHHHHHHhC-CCEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcC
Confidence 999999999999986531 2245677788887654 3566677543 344555443333322223 4699
Q ss_pred CchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHH
Q 017155 300 GQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRK 343 (376)
Q Consensus 300 GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ 343 (376)
|+||+|++.+++.++ +|.++ ..|+..|..+...
T Consensus 215 GaGD~f~a~~~~~l~---~g~~~--------~~a~~~A~~~~~~ 247 (254)
T cd01173 215 GTGDLFAALLLARLL---KGKSL--------AEALEKALNFVHE 247 (254)
T ss_pred ChHHHHHHHHHHHHH---cCCCH--------HHHHHHHHHHHHH
Confidence 999999999999998 88775 3556555544433
No 28
>PRK07105 pyridoxamine kinase; Validated
Probab=99.78 E-value=5.5e-17 Score=156.63 Aligned_cols=254 Identities=16% Similarity=0.175 Sum_probs=162.3
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCcccccccCCceeeecccccccccCCCchhhhhhhhh
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISS 160 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (376)
..+||.+-....++|||++||+.++.+ ++.++|+++.|+...+.. ..+..+..++ .
T Consensus 4 ~~~vl~~~d~~~~G~aG~~adi~~~~~~g~~~~~v~T~~~~q~t~~~~~-~~~~~~~~~~-------------------~ 63 (284)
T PRK07105 4 VKRVAAIHDLSGFGRVALTASIPIMSSMGLQVCPLPTALLSSHTGGFQN-PSIIDLTDGM-------------------Q 63 (284)
T ss_pred CCeEEEEecccccceehHhhHHHHHHHcCCcceeccceEeccCCCCCCC-CeEeecHHHH-------------------H
Confidence 348888888888899999999998887 779999999999865332 1111111000 0
Q ss_pred hhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc---cc---ccc-hhhhcc-CC-CeeE
Q 017155 161 KILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF---LV---TNS-IDLVSG-YP-LAVL 231 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~---ll---~~~-~~ll~~-~~-~~vI 231 (376)
..++++.+.-.++|+|++|. ..+.+..+.+.++++.+++.++|+|+||+... +. ... .+.++. .+ .++|
T Consensus 64 ~~~~~~~~~~~~~~aik~G~--l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advi 141 (284)
T PRK07105 64 AFLTHWKSLNLKFDAIYSGY--LGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVI 141 (284)
T ss_pred HHHHHHHHcCCccCEEEECc--CCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEe
Confidence 11222222223789999984 44667788888888877767889999998532 11 110 111112 33 7999
Q ss_pred cCCHHHHHHHhcccccC-CCCCCcHHHHHHHHHHhhCCeEEEEcC-----C--ceEEEcC--CeEEEEeeCCCCCCCCCc
Q 017155 232 TPNVNEYKRLVQKVLNC-EVNDRDAPELLQSLAKQIGGVTILQKG-----K--SDLISDG--EIAKSVSIYGSPRRCGGQ 301 (376)
Q Consensus 232 TPN~~E~~~L~g~~~~~-~v~~~d~~~~a~~la~~~~~~vVllKG-----~--~~vi~~~--~~~~~i~~~g~~~~t~Gs 301 (376)
|||..|++.|+|.+... ..+.++..+.++++.+. +...|++|| + +.+++++ +..+.+...-.+..++|+
T Consensus 142 tpN~~Ea~~L~g~~~~~~~~~~~~~~~~a~~l~~~-g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~Ga 220 (284)
T PRK07105 142 TPNLTEACLLLDKPYLEKSYSEEEIKQLLRKLADL-GPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYIPAHYPGT 220 (284)
T ss_pred cCCHHHHHHHcCCCcCcCCCCHHHHHHHHHHHHhc-CCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecccCCCcCCh
Confidence 99999999999865310 00123556677777664 334677787 2 3444543 233333322223358999
Q ss_pred hHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHhh
Q 017155 302 GDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDK---KRSTLTTDIIECLGRSLEDI 372 (376)
Q Consensus 302 GDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~---~~~~~a~dii~~l~~~~~~l 372 (376)
||+|++.+++.++ +|+++ ..|+..|..+...+-+.+.+.. .+++..+.++..|.....++
T Consensus 221 GD~f~aa~~~~l~---~g~~l--------~~av~~A~~~~~~~i~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~ 283 (284)
T PRK07105 221 GDIFTSVITGSLL---QGDSL--------PIALDRAVQFIEKGIRATLGLKYDLREGILLEKVLGYLIAPFQEL 283 (284)
T ss_pred hHHHHHHHHHHHh---CCCCH--------HHHHHHHHHHHHHHHHHHHhcCCchhhCccHHHHHHHHHHHHHhh
Confidence 9999999999999 88775 3566666555555544444332 57888999988888776654
No 29
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.3e-15 Score=147.82 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=128.7
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhc
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQ 243 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g 243 (376)
+.+..++++.|+||++..+++.. ..++|.++++.+++.++++|+|.++..+... + +.+|++||||..|++.|+|
T Consensus 121 ~~~~~~l~~~d~VvlsGSlP~g~-~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~----L-~~~P~lIKPN~~EL~~~~g 194 (310)
T COG1105 121 EQLKALLESDDIVVLSGSLPPGV-PPDAYAELIRILRQQGAKVILDTSGEALLAA----L-EAKPWLIKPNREELEALFG 194 (310)
T ss_pred HHHHHhcccCCEEEEeCCCCCCC-CHHHHHHHHHHHHhcCCeEEEECChHHHHHH----H-ccCCcEEecCHHHHHHHhC
Confidence 44455567899999997666543 2468999999999999999999999876542 3 2459999999999999999
Q ss_pred ccccCCCCCCcHHHHHHHHHHh-hCCeEEEEcCCceEEEcCCeEEEEeeCCCC-CCCCCchH-HHHHHHHHHHhhhhccC
Q 017155 244 KVLNCEVNDRDAPELLQSLAKQ-IGGVTILQKGKSDLISDGEIAKSVSIYGSP-RRCGGQGD-ILSGSVAVFLSWARAKG 320 (376)
Q Consensus 244 ~~~~~~v~~~d~~~~a~~la~~-~~~~vVllKG~~~vi~~~~~~~~i~~~g~~-~~t~GsGD-vLaG~Iaa~LA~~~~g~ 320 (376)
.+.. +..|.+++++++..+ ..+++|++++.+++++++++.|+..++..+ .+++|+|| ++|||+++++- ++
T Consensus 195 ~~~~---~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~----~~ 267 (310)
T COG1105 195 RELT---TLEDVIKAARELLAEGIENVIVSLGADGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLK----GK 267 (310)
T ss_pred CCCC---ChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCeEEEeCCCcceecCcCchHHHHHHHHHHHHc----CC
Confidence 8753 335888899886665 567899999999999999998887732222 36999999 99999999874 55
Q ss_pred CcccCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHH
Q 017155 321 KATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLG 366 (376)
Q Consensus 321 ~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~~~~~a~dii~~l~ 366 (376)
++ ..+...|+. +|..+..+.+.++...+-++.+.
T Consensus 268 ~~--------e~~l~~avA----~g~a~~~~~~~~~~~~~~~~~~~ 301 (310)
T COG1105 268 SL--------EEALRFAVA----CGAAAASQKGTGIPDLDQLKKIY 301 (310)
T ss_pred CH--------HHHHHHHHH----HHHHHhhcCCCCCCCHHHHHHHh
Confidence 54 244444442 33333333445555444445444
No 30
>PRK05756 pyridoxamine kinase; Validated
Probab=99.66 E-value=1.5e-14 Score=139.81 Aligned_cols=226 Identities=16% Similarity=0.128 Sum_probs=143.9
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhc----ccCeeEEecccCCc-ccccccCCceeeecccccccccCCCchhhhhhhhhh
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKI----GADLSHVFCTKDAA-PVIKSYSPELIVHPILEESYNISGLEDEERRCISSK 161 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~----Gaglvt~~t~~~~~-~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (376)
+||+|.+.+.++++++.++...+.+ ++.+.|+++.++.. ..... ..+. +++.+ +
T Consensus 3 ~il~i~~~~~~G~~g~~~~~~~l~~~g~~~~~~~T~~~s~~t~~~~~~g---~~~~--------------~~~~~----~ 61 (286)
T PRK05756 3 NILSIQSHVVYGHVGNSAAVFPMQRLGVNVWPLNTVQFSNHTGYGKWTG---CVMP--------------PSHLT----E 61 (286)
T ss_pred cEEEEeceeecccccchhHHHHHHHcCCcceeeceEeecCCCCCCCccC---eeCC--------------HHHHH----H
Confidence 7999999999999999999998887 66788888877654 21110 0000 00000 1
Q ss_pred hHHHHHH--hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC--CCEEEeCCccc----cc-ccc-hh-hhcc-CC-C
Q 017155 162 ILAEVDK--WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN--VPIVIDGDGLF----LV-TNS-ID-LVSG-YP-L 228 (376)
Q Consensus 162 ~~~~l~~--~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~--~pvVLDpdgl~----ll-~~~-~~-ll~~-~~-~ 228 (376)
.++.+.. ++..+|++++|. + .+.+..+.+.++++.+++.+ ..+|+||+... .. ... .+ +.+. .+ +
T Consensus 62 ~~~~~~~~~~l~~~~~v~~G~-l-~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~a 139 (286)
T PRK05756 62 IVQGIADIGWLGECDAVLSGY-L-GSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAA 139 (286)
T ss_pred HHHHHHhcCccccCCEEEECC-C-CCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccc
Confidence 1122222 235789998884 4 46667888999998776554 56899998543 11 111 11 1111 23 7
Q ss_pred eeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc----------eEEEcCCeEEEEeeCCCCC--
Q 017155 229 AVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS----------DLISDGEIAKSVSIYGSPR-- 296 (376)
Q Consensus 229 ~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~----------~vi~~~~~~~~i~~~g~~~-- 296 (376)
++||||..|++.|+|.+.. +.++..+.++++.+. +...|++|+.+ .+++++++.+++.....+.
T Consensus 140 diitpN~~Ea~~L~g~~~~---~~~~~~~~~~~l~~~-g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v 215 (286)
T PRK05756 140 DIITPNLFELEWLSGRPVE---TLEDAVAAARALIAR-GPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMR 215 (286)
T ss_pred cEecCCHHHHHHHhCCCcC---CHHHHHHHHHHHHHh-CCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCC
Confidence 9999999999999986431 224566777888764 33456666542 3455655555454222233
Q ss_pred CCCCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhh
Q 017155 297 RCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFK 350 (376)
Q Consensus 297 ~t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~ 350 (376)
.++|+||+|++.+++.++ +|.++ ..|+..|..+...+=+.+.+
T Consensus 216 ~~~GaGD~f~a~~~a~l~---~g~~~--------~~al~~A~~~~~~~i~~~~~ 258 (286)
T PRK05756 216 QPVGVGDLTSALFLARLL---QGGSL--------EEALEHTTAAVYEVMARTKE 258 (286)
T ss_pred CCCChHHHHHHHHHHHHh---cCCCH--------HHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999888 88765 46666676666655555544
No 31
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.56 E-value=3.5e-13 Score=131.17 Aligned_cols=230 Identities=17% Similarity=0.128 Sum_probs=135.5
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhc-ccCeeEEeccc--CCcccccccCCceeeecccccccccCCCchhhhhhhhhh
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKI-GADLSHVFCTK--DAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSK 161 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~-Gaglvt~~t~~--~~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (376)
..+||+|.+.++++++|..++...++. |....++.|.+ +... .. ....+.. ++++. .+
T Consensus 4 ~~~vl~i~~~~~~G~~G~~~~~~~l~~~g~~~~~~~tv~ls~~~~-~~-----~~~g~~i---------~~~~~----~~ 64 (296)
T PTZ00344 4 EKKVLSIQSHVTHGYVGNRAATFPLQLLGFDVDFVNTVQLSNHTG-YP-----VIKGHRL---------DLNEL----IT 64 (296)
T ss_pred CCeEEEEcceeecccccchhHHHHHHHcCCcceeeccEecCCCCC-CC-----CccCeeC---------CHHHH----HH
Confidence 358999999999999999999977765 77666666544 2221 10 1000000 01110 01
Q ss_pred hHHHHHHh--hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC--CCEEEeCCccc---ccccc--hhhhcc-C-CCee
Q 017155 162 ILAEVDKW--MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN--VPIVIDGDGLF---LVTNS--IDLVSG-Y-PLAV 230 (376)
Q Consensus 162 ~~~~l~~~--l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~--~pvVLDpdgl~---ll~~~--~~ll~~-~-~~~v 230 (376)
.++.+.+. ..++++|++|. ++ +.+..+.+.++++.+++.+ +++|+||+... +.... .+.++. . .+++
T Consensus 65 ~l~~l~~~~~~~~~~~v~sG~-l~-~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~~di 142 (296)
T PTZ00344 65 LMDGLRANNLLSDYTYVLTGY-IN-SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPYADV 142 (296)
T ss_pred HHHHHHhcCCcccCCEEEECC-CC-CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhhCCE
Confidence 22333332 22568888885 54 5677777888777665544 47999999632 11111 122222 2 3899
Q ss_pred EcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-----c----eEEE--cC----CeEEEEeeCCCC
Q 017155 231 LTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-----S----DLIS--DG----EIAKSVSIYGSP 295 (376)
Q Consensus 231 ITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-----~----~vi~--~~----~~~~~i~~~g~~ 295 (376)
||||..|++.|+|.+.. +.++..+.++++.+. +...|+++|. + .++. +. ++.+.+.....+
T Consensus 143 i~pN~~E~~~L~g~~~~---~~~~~~~~~~~l~~~-g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (296)
T PTZ00344 143 ITPNQFEASLLSGVEVK---DLSDALEAIDWFHEQ-GIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE 218 (296)
T ss_pred EeCCHHHHHHHhCCCCC---CHHHHHHHHHHHHHh-CCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC
Confidence 99999999999986431 223556677777765 3345555632 2 1332 21 233434322223
Q ss_pred CCCCCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhc
Q 017155 296 RRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKD 351 (376)
Q Consensus 296 ~~t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~ 351 (376)
..++|+||+|++.++++++ +| ++ ..|+..|..+...+=+...+.
T Consensus 219 ~~~~GaGD~f~A~~~a~l~---~g-~~--------~~a~~~A~a~~~~~i~~~~~~ 262 (296)
T PTZ00344 219 GRYTGTGDLFAALLLAFSH---QH-PM--------DLAVGKAMGVLQDIIKATRES 262 (296)
T ss_pred CCCCCchHHHHHHHHHHHh---cC-CH--------HHHHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999998 76 54 466666766666555554433
No 32
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.50 E-value=2.7e-12 Score=124.04 Aligned_cols=223 Identities=14% Similarity=0.135 Sum_probs=136.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhc-cc---CeeEEecccCCc-cccc--ccCCceeeecccccccccCCCchhhhhhhh
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKI-GA---DLSHVFCTKDAA-PVIK--SYSPELIVHPILEESYNISGLEDEERRCIS 159 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~-Ga---glvt~~t~~~~~-~~i~--~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (376)
+||+|-=.-.|+-.+.-++.-.+.+ |. .+.|+....... ..+. ...+|.+
T Consensus 17 ~vl~i~~~~~~G~v~~~~a~~~l~~~G~~v~~lpTv~~s~~~~y~~~~~~~~~~~~i----------------------- 73 (281)
T PRK08176 17 DIVAVQSQVVYGSVGNSIAVPAIKANGLRVFAVPTVLLSNTPHYPTFYGGAIPDEWF----------------------- 73 (281)
T ss_pred eEEEEeceeeecccccHHHHHHHHHcCCcccccceEeecCCCCCCCcCCeeCCHHHH-----------------------
Confidence 5899988888888888888777666 54 455555444331 1111 0111111
Q ss_pred hhhHHHHHHh--hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhc--CCCCEEEeCCccc----cc-ccc-hhhh-cc-CC
Q 017155 160 SKILAEVDKW--MERFDCLVVGPGLGRDPYLLECVSEIMKHARQ--SNVPIVIDGDGLF----LV-TNS-IDLV-SG-YP 227 (376)
Q Consensus 160 ~~~~~~l~~~--l~~~davvIGpGl~~~~~~~~~~~~il~~a~~--~~~pvVLDpdgl~----ll-~~~-~~ll-~~-~~ 227 (376)
.+.++.+.+. +.++|+|++|. + .+.+..+.+.++++..+. .+.++|+||+... +. ... .+.+ +. .+
T Consensus 74 ~~~l~~~~~~~~l~~~d~i~~G~-l-~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~ 151 (281)
T PRK08176 74 SGYLRALQERDALRQLRAVTTGY-M-GSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLP 151 (281)
T ss_pred HHHHHHHHhcCccccCCEEEECC-C-CCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHh
Confidence 1223333322 24789999984 4 477777888888876543 4678999998432 11 111 1112 12 23
Q ss_pred -CeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc---------eEEEcCCeEEEEeeCCCCCC
Q 017155 228 -LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS---------DLISDGEIAKSVSIYGSPRR 297 (376)
Q Consensus 228 -~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~---------~vi~~~~~~~~i~~~g~~~~ 297 (376)
.++||||..|++.|+|.+.. +.++..+.++++.+. ++..|++||.+ .+++++++.+.....-.+..
T Consensus 152 ~advitPN~~Ea~~L~g~~~~---~~~~~~~~~~~l~~~-g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
T PRK08176 152 LAQGLTPNIFELEILTGKPCR---TLDSAIAAAKSLLSD-TLKWVVITSAAGNEENQEMQVVVVTADSVNVISHPRVDTD 227 (281)
T ss_pred hcCEeCCCHHHHHHHhCCCCC---CHHHHHHHHHHHHhc-CCCEEEEeeccCCCCCCcEEEEEEeCCceEEEecCccCCC
Confidence 79999999999999986431 224566778888765 44556677653 24455554433321112225
Q ss_pred CCCchHHHHHHHHHHHhhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHh
Q 017155 298 CGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAF 349 (376)
Q Consensus 298 t~GsGDvLaG~Iaa~LA~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~ 349 (376)
++|+||+|++.+++.++ +|+++ ..|+..|..+...+=+.+.
T Consensus 228 ~~GaGD~faa~~~a~l~---~g~~l--------~~Av~~A~~~v~~~i~~t~ 268 (281)
T PRK08176 228 LKGTGDLFCAELVSGLL---KGKAL--------TDAAHRAGLRVLEVMRYTQ 268 (281)
T ss_pred CCChhHHHHHHHHHHHh---cCCCH--------HHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999 88765 4666666655555554443
No 33
>PLN02978 pyridoxal kinase
Probab=99.33 E-value=6.4e-11 Score=116.09 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=99.6
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhc--CCCCEEEeCCccc---cc-ccc-hhhh-cc-CC-CeeEcCCHHHHHHH
Q 017155 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQ--SNVPIVIDGDGLF---LV-TNS-IDLV-SG-YP-LAVLTPNVNEYKRL 241 (376)
Q Consensus 172 ~~davvIGpGl~~~~~~~~~~~~il~~a~~--~~~pvVLDpdgl~---ll-~~~-~~ll-~~-~~-~~vITPN~~E~~~L 241 (376)
.+|++++| +..+.+..+.+.++++.+++ .++++|+||+... +. ... .+.+ +. .+ .+|||||..|++.|
T Consensus 86 ~~~ai~~G--~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 86 FYTHLLTG--YIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred ccCEEEec--ccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 47999998 44467788899999987765 4577999998532 11 110 0111 11 33 79999999999999
Q ss_pred hcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC---ceE-EEc------C--CeEEEEeeCCCCCCCCCchHHHHHHH
Q 017155 242 VQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK---SDL-ISD------G--EIAKSVSIYGSPRRCGGQGDILSGSV 309 (376)
Q Consensus 242 ~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~---~~v-i~~------~--~~~~~i~~~g~~~~t~GsGDvLaG~I 309 (376)
+|.+.. +.++..+.++++.+. +...|++||. +.+ +.. + ++.+++...-.+...+||||+|++++
T Consensus 164 ~g~~~~---~~~~~~~a~~~l~~~-g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~GtGD~fsA~l 239 (308)
T PLN02978 164 TGIRIV---TEEDAREACAILHAA-GPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAYFTGTGDLMAALL 239 (308)
T ss_pred hCCCCC---CHHHHHHHHHHHHHh-CCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCCCCCchHHHHHHH
Confidence 986431 223556777777764 3345666663 222 221 1 24444442222334789999999999
Q ss_pred HHHHhhhhcc-CCcccCCCChhHHHHHHHHHHHHHHHHH
Q 017155 310 AVFLSWARAK-GKATTSQMNPTVLGCIAGSALLRKAASL 347 (376)
Q Consensus 310 aa~LA~~~~g-~~~~~~~~~~~~~aa~~a~~l~~~ag~~ 347 (376)
+++++ +| .++ ..|+..|..+...+=+.
T Consensus 240 aa~l~---~g~~~l--------~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 240 LGWSH---KYPDNL--------DKAAELAVSSLQAVLRR 267 (308)
T ss_pred HHHHh---cCCcCH--------HHHHHHHHHHHHHHHHH
Confidence 99998 76 554 35665665544444443
No 34
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.29 E-value=6.1e-10 Score=107.62 Aligned_cols=209 Identities=17% Similarity=0.164 Sum_probs=121.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhc-ccCeeEEecccCCccc-ccccCCceeeecccccccccCCCchhhhhhhhhhhHH
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKI-GADLSHVFCTKDAAPV-IKSYSPELIVHPILEESYNISGLEDEERRCISSKILA 164 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~-Gaglvt~~t~~~~~~~-i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (376)
+||+|-=.-.++..+..++.-.+++ |.....+-|.+-.... +.......+ . +++. . +.++
T Consensus 3 ~vl~i~~~~~~g~~~~~~~~~~l~~~g~~~~~~pT~~~s~h~~~~~~~g~~~----~----------~~~~---~-~~~~ 64 (286)
T TIGR00687 3 NVLSIQSHVVYGHVGNRAATFPLQRLGFEVWAVNTVQFSNHTGYGKWTGQVL----P----------PDEL---T-ELVD 64 (286)
T ss_pred eEEEEcCceecccccCchHHHHHHHcCCcceeeCcEEcCCCCCCCCCcCeEC----C----------HHHH---H-HHHH
Confidence 6777777777888888888877777 7765555554433211 111100000 0 0000 0 1122
Q ss_pred HHHH--hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC--CCEEEeCCcccc-----cccc-hhhh-cc-CC-CeeE
Q 017155 165 EVDK--WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN--VPIVIDGDGLFL-----VTNS-IDLV-SG-YP-LAVL 231 (376)
Q Consensus 165 ~l~~--~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~--~pvVLDpdgl~l-----l~~~-~~ll-~~-~~-~~vI 231 (376)
.+.+ ++.++|++++|. + .+.+..+.+.++++.+++.+ +++|+||+.... .... .+.+ ++ .+ .++|
T Consensus 65 ~~~~~~~~~~~d~v~~G~-l-~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii 142 (286)
T TIGR00687 65 GLAAINKLNQCDAVLSGY-L-GSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADII 142 (286)
T ss_pred HHHhcCccccCCEEEECC-C-CCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEe
Confidence 2211 235899998885 4 45667788999998877654 679999963311 1111 1222 22 34 6999
Q ss_pred cCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEc--CC-ce--------EEEcCCeEEEEeeCCCC--CCC
Q 017155 232 TPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQK--GK-SD--------LISDGEIAKSVSIYGSP--RRC 298 (376)
Q Consensus 232 TPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllK--G~-~~--------vi~~~~~~~~i~~~g~~--~~t 298 (376)
|||..|++.|+|.+.. +.++..+.++++.+.. ...|+++ |. +. +++++++.+++.....+ ..+
T Consensus 143 ~pN~~Ea~~L~g~~~~---~~~~~~~~~~~l~~~g-~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 218 (286)
T TIGR00687 143 TPNQFELELLTGRKIN---TVEEALAAADALIAMG-PDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQP 218 (286)
T ss_pred cCCHHHHHHHhCCCcC---CHHHHHHHHHHHHHhC-CCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCC
Confidence 9999999999986531 2235667777787653 2344555 32 21 34454544444322222 247
Q ss_pred CCchHHHHHHHHHHHhhhhccCCc
Q 017155 299 GGQGDILSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 299 ~GsGDvLaG~Iaa~LA~~~~g~~~ 322 (376)
+|+||+|++.+.+.++ +|.++
T Consensus 219 ~GaGD~f~A~~l~~l~---~g~~~ 239 (286)
T TIGR00687 219 VGTGDLIAALLLATLL---HGNSL 239 (286)
T ss_pred CChHHHHHHHHHHHHh---cCCCH
Confidence 9999998888888888 78765
No 35
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=1.3e-09 Score=107.89 Aligned_cols=170 Identities=19% Similarity=0.318 Sum_probs=114.8
Q ss_pred hhHHHHHHhhccCCEEEEc---CCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccC-CCeeEcCCHH
Q 017155 161 KILAEVDKWMERFDCLVVG---PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY-PLAVLTPNVN 236 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIG---pGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~-~~~vITPN~~ 236 (376)
..++.+.+.+..+|+++++ -|..++ ++.+++.+++.++|+.+||-|...- +| ..++||||..
T Consensus 132 ~ll~~~~~~l~~~~~vVLSDY~KG~L~~------~q~~I~~ar~~~~pVLvDPKg~Df~--------~Y~GAtLiTPN~~ 197 (467)
T COG2870 132 KLLEKIKNALKSFDALVLSDYAKGVLTN------VQKMIDLAREAGIPVLVDPKGKDFE--------KYRGATLITPNLK 197 (467)
T ss_pred HHHHHHHHHhhcCCEEEEeccccccchh------HHHHHHHHHHcCCcEEECCCCcchh--------hhCCCeecCCCHH
Confidence 4566777778899999998 444433 6777888899999999999876432 33 3899999999
Q ss_pred HHHHHhcccccCCCCCCcHHHHHHHHHHhhCC-eEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHH
Q 017155 237 EYKRLVQKVLNCEVNDRDAPELLQSLAKQIGG-VTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFL 313 (376)
Q Consensus 237 E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~-~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~L 313 (376)
|+....|... +++++.+.+++|.++++- ..++..++ +--++.+++.+.+++..... -++|+||++.+.+|..+
T Consensus 198 E~~~~vg~~~----~e~el~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la~~l 273 (467)
T COG2870 198 EFEEAVGKCK----SEEELEERGQKLKEELDLSALLVTRSEKGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLAAAL 273 (467)
T ss_pred HHHHHHcccc----cHHHHHHHHHHHHHhhCcceEEEEeccCCceeecCCcccccchhheeeeeccCCCchHHHHHHHHH
Confidence 9999998742 345677788999988652 44555555 44444444434454333333 39999999999999999
Q ss_pred hhhhccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcCC-CCCcHHHHHH
Q 017155 314 SWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKK-RSTLTTDIIE 363 (376)
Q Consensus 314 A~~~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~-~~~~a~dii~ 363 (376)
| .|.++ .+||. +.+.||-....+.| ..+.+.+|..
T Consensus 274 a---aG~s~--------~eAc~----lAN~AagiVVgKlGTatvs~~EL~n 309 (467)
T COG2870 274 A---AGASL--------EEACE----LANAAAGIVVGKLGTATVSPEELEM 309 (467)
T ss_pred H---cCCCH--------HHHHH----HhhhhcceEEeeccceeecHHHHHh
Confidence 9 88775 35554 44556655443433 3333444443
No 36
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.09 E-value=7.8e-09 Score=100.45 Aligned_cols=145 Identities=16% Similarity=0.218 Sum_probs=89.8
Q ss_pred HHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHh
Q 017155 163 LAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLV 242 (376)
Q Consensus 163 ~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~ 242 (376)
++.+.+.++++|++.++... ......+.+..+++.+++.++|+++||.+... ..+ ...++++||..|++.|+
T Consensus 134 ~~~~~~~l~~~~~v~~~~~~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-----~~~--~~~d~l~~n~~E~~~l~ 205 (315)
T TIGR02198 134 LAAIREQLASADAVVLSDYA-KGVLTPRVVQEVIAAARKHGKPVLVDPKGKDF-----SRY--RGATLITPNRKEAEAAV 205 (315)
T ss_pred HHHHHhhhhhCCEEEEecCC-CCccCHHHHHHHHHHHHhcCCCEEEeCCCcch-----hhc--CCCcEECCCHHHHHHHh
Confidence 34445557889999996211 11111245667778888889999999985421 112 13789999999999999
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCC-eEEEEcCC-ceEEEc-CCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhhhc
Q 017155 243 QKVLNCEVNDRDAPELLQSLAKQIGG-VTILQKGK-SDLISD-GEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARA 318 (376)
Q Consensus 243 g~~~~~~v~~~d~~~~a~~la~~~~~-~vVllKG~-~~vi~~-~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~~~ 318 (376)
+.. .+..+..+.++++.++.+. .+|+..|+ +.++++ ++..+++....... .++|+||+|.|.+.+.+. +
T Consensus 206 ~~~----~~~~~~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~---~ 278 (315)
T TIGR02198 206 GAC----DTEAELVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALA---A 278 (315)
T ss_pred CCC----CCHHHHHHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHH---c
Confidence 831 1224566677777665432 34444454 566666 34455554222222 599999976666666666 7
Q ss_pred cCCc
Q 017155 319 KGKA 322 (376)
Q Consensus 319 g~~~ 322 (376)
|+++
T Consensus 279 g~~~ 282 (315)
T TIGR02198 279 GASL 282 (315)
T ss_pred CCCH
Confidence 7765
No 37
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.07 E-value=2.5e-09 Score=96.06 Aligned_cols=132 Identities=22% Similarity=0.266 Sum_probs=81.1
Q ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccC-CCeeEcCCHHHHHHHhcccccCCCCC
Q 017155 174 DCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY-PLAVLTPNVNEYKRLVQKVLNCEVND 252 (376)
Q Consensus 174 davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~-~~~vITPN~~E~~~L~g~~~~~~v~~ 252 (376)
|+++++...+. .+.+.++++.+++.++++++||..........++.+.. .+++++||..|+++|++.... +.
T Consensus 59 ~~v~i~~~~~~----~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~---~~ 131 (196)
T cd00287 59 DAVVISGLSPA----PEAVLDALEEARRRGVPVVLDPGPRAVRLDGEELEKLLPGVDILTPNEEEAEALTGRRDL---EV 131 (196)
T ss_pred cEEEEecccCc----HHHHHHHHHHHHHcCCeEEEeCCccccccccchHHHHHhhCCEECCCHHHHHHHhCCCCC---Ch
Confidence 56777653322 23466677777778999999999765433211111112 379999999999999986421 22
Q ss_pred CcHHHHHHHHHHhhCCeEEEEcCC-ceEEEc-CCeEEEEeeCCCCC-CCCCchHHH-HHHHHHH
Q 017155 253 RDAPELLQSLAKQIGGVTILQKGK-SDLISD-GEIAKSVSIYGSPR-RCGGQGDIL-SGSVAVF 312 (376)
Q Consensus 253 ~d~~~~a~~la~~~~~~vVllKG~-~~vi~~-~~~~~~i~~~g~~~-~t~GsGDvL-aG~Iaa~ 312 (376)
++..+.++.+.++....+|+..|+ +.++.+ ++..+.+....... .++|+||++ ||+++++
T Consensus 132 ~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l 195 (196)
T cd00287 132 KEAAEAAALLLSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAALAAGL 195 (196)
T ss_pred HHHHHHHHHHHhcCCCEEEEEECCCccEEEecCCceEEcCCccCCcccCCCchHHHHHHHHHHh
Confidence 345567777776643355665664 667777 66555444221222 599999955 4455443
No 38
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.06 E-value=1e-08 Score=99.69 Aligned_cols=142 Identities=21% Similarity=0.246 Sum_probs=89.1
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhcccccCC
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCE 249 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~~~~ 249 (376)
+++.+.+++...++.. ...+.+.++++.+++.++++++|+.+.... +.+....+++++||..|+..|+|.+..
T Consensus 128 ~~~~~~~~i~g~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~~~~~i~~n~~E~~~l~g~~~~-- 200 (309)
T PRK10294 128 IESGAILVISGSLPPG-VKLEKLTQLISAAQKQGIRCIIDSSGDALS----AALAIGNIELVKPNQKELSALVNRDLT-- 200 (309)
T ss_pred cCCCCEEEEeCCCCCC-CCHHHHHHHHHHHHHcCCeEEEeCCCHHHH----HHHhcCCCeEECCCHHHHHHHhCCCCC--
Confidence 4678999997545432 223567788888888899999999754211 111111378999999999999986421
Q ss_pred CCCCcHHHHHHHHHHhhC-CeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhhhccCCc
Q 017155 250 VNDRDAPELLQSLAKQIG-GVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 250 v~~~d~~~~a~~la~~~~-~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~~~g~~~ 322 (376)
+.++..++++.+.+..+ ..+|+..|. +.+++++++.+++.....+. .++|+||.|.|.+.+.+. +|+++
T Consensus 201 -~~~~~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~---~g~~~ 272 (309)
T PRK10294 201 -QPDDVRKAAQELVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLA---ENASL 272 (309)
T ss_pred -CHHHHHHHHHHHHHcCCCCEEEEecCCCceEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHH---cCCCH
Confidence 12345566777766542 234444444 66777766655554322222 599999965554444445 77765
No 39
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.02 E-value=1.4e-08 Score=97.36 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=91.9
Q ss_pred hhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHH
Q 017155 159 SSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEY 238 (376)
Q Consensus 159 ~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~ 238 (376)
+++.++.+.+.++.+|++++.... . .+.+..+++.+++.++++++|+....... .++++ ..++|+||..|+
T Consensus 116 ~~~~~~~~~~~~~~~~~v~~~~~~--~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~~--~~~~~--~~dil~~n~~E~ 186 (292)
T cd01174 116 TPADVDAALELIAAADVLLLQLEI--P---LETVLAALRAARRAGVTVILNPAPARPLP--AELLA--LVDILVPNETEA 186 (292)
T ss_pred CHHHHHHHHHhcccCCEEEEeCCC--C---HHHHHHHHHHHHhcCCEEEEeCCCcCcCc--HHHHh--hCCEEeeCHHHH
Confidence 445556666667899999996322 1 23566777888888999999997542111 22332 278999999999
Q ss_pred HHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCC-CCCCCchHH-HHHHHHHHHhh
Q 017155 239 KRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSP-RRCGGQGDI-LSGSVAVFLSW 315 (376)
Q Consensus 239 ~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~-~~t~GsGDv-LaG~Iaa~LA~ 315 (376)
..|++.... +..+..+.++.+.+.....+|+..|+ +.++++++..+++.....+ ..++|+||. .||+++++ .
T Consensus 187 ~~l~~~~~~---~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l-~- 261 (292)
T cd01174 187 ALLTGIEVT---DEEDAEKAARLLLAKGVKNVIVTLGAKGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAAL-A- 261 (292)
T ss_pred HHHhCCCCC---CHHHHHHHHHHHHHcCCCEEEEEeCCCceEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHH-H-
Confidence 999986421 22345566777765432234444444 5666666665555422222 259999995 55555555 4
Q ss_pred hhccCCc
Q 017155 316 ARAKGKA 322 (376)
Q Consensus 316 ~~~g~~~ 322 (376)
+|.++
T Consensus 262 --~g~~~ 266 (292)
T cd01174 262 --RGLSL 266 (292)
T ss_pred --cCCCH
Confidence 56664
No 40
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.01 E-value=1.1e-08 Score=98.30 Aligned_cols=143 Identities=16% Similarity=0.201 Sum_probs=89.3
Q ss_pred HhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhccccc
Q 017155 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLN 247 (376)
Q Consensus 168 ~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~~ 247 (376)
+.++++|++++..-++.. ...+.+..+++.+++.++|+++|+....+ .+.+. ..+++++||..|+..+++....
T Consensus 124 ~~~~~~~~~~i~g~~~~~-~~~~~~~~~~~~~~~~~~~i~~D~~~~~~----~~~~~-~~~dil~~n~~E~~~l~~~~~~ 197 (289)
T cd01164 124 ALLKKGDIVVLSGSLPPG-VPADFYAELVRLAREKGARVILDTSGEAL----LAALA-AKPFLIKPNREELEELFGRPLG 197 (289)
T ss_pred HhcCCCCEEEEeCCCCCC-cCHHHHHHHHHHHHHcCCeEEEECChHHH----HHHHh-cCCcEECCCHHHHHHHhCCCCC
Confidence 445789999995212211 11234566677777789999999975322 12222 2379999999999999986421
Q ss_pred CCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhhhccCCc
Q 017155 248 CEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 248 ~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~~~g~~~ 322 (376)
+..+..+.++.+.++....+|+..|. +.++.++++.+++.....+. .++|+||+++|.+...+. +|+++
T Consensus 198 ---~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~---~g~~~ 268 (289)
T cd01164 198 ---DEEDVIAAARKLIERGAENVLVSLGADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLA---QGLSL 268 (289)
T ss_pred ---CHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHH---cCCCH
Confidence 22456667777777643345555565 66676666666554322332 499999977555444555 67665
No 41
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.01 E-value=2.2e-08 Score=96.90 Aligned_cols=143 Identities=16% Similarity=0.181 Sum_probs=89.5
Q ss_pred HhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhccccc
Q 017155 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLN 247 (376)
Q Consensus 168 ~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~~ 247 (376)
+.++++|++.++.-+... ...+.+..+++.+++.++++++||....+. +.+. ...++++||..|+..|+|....
T Consensus 123 ~~~~~~~~v~i~~~~~~~-~~~~~~~~~~~~~~~~g~~v~~D~~~~~~~----~~~~-~~~dil~~n~~E~~~l~g~~~~ 196 (303)
T TIGR03168 123 ELLASGDIVVISGSLPPG-VPPDFYAQLIAIARKRGAKVILDTSGEALR----EALA-AKPFLIKPNHEELEELFGRELK 196 (303)
T ss_pred HhccCCCEEEEeCCCCCC-CCHHHHHHHHHHHHHCCCEEEEECCcHHHH----HHHh-cCCcEECCCHHHHHHHhCCCCC
Confidence 446789999995212111 112456677777888899999999753211 1121 2478999999999999986421
Q ss_pred CCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhhhccCCc
Q 017155 248 CEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 248 ~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~~~g~~~ 322 (376)
+..+..+.++.+.+.....+|+..|. +.+++++++.+++.....+. .++|+||++.|.+.+.+. +|.++
T Consensus 197 ---~~~~~~~~~~~l~~~g~~~vviT~g~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~---~g~~i 267 (303)
T TIGR03168 197 ---TEEEIIEAARELLDRGAENVLVSLGADGALLVTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLA---RGLSL 267 (303)
T ss_pred ---CHHHHHHHHHHHHHcCCCEEEEeecCCCcEEEeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHH---cCCCH
Confidence 22345566676766533345555565 66677766666554222222 499999976666665556 67654
No 42
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.00 E-value=2.4e-08 Score=103.04 Aligned_cols=141 Identities=18% Similarity=0.277 Sum_probs=89.7
Q ss_pred HHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhcc
Q 017155 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQK 244 (376)
Q Consensus 165 ~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~ 244 (376)
.+.+.++++|+++++ ++... ..+.+..+++.+++.++|+++||.+..+ . .+ ...++++||..|+..|+|.
T Consensus 136 ~~~~~l~~~~~v~is-~~~~~--~~~~~~~~~~~~k~~g~~vv~Dp~~~~~-~----~~--~~~dil~pN~~Ea~~l~g~ 205 (473)
T PRK11316 136 RIEQALPSIGALVLS-DYAKG--ALASVQAMIQLARKAGVPVLIDPKGTDF-E----RY--RGATLLTPNLSEFEAVVGK 205 (473)
T ss_pred HHHHHhccCCEEEEe-cCCcc--chhHHHHHHHHHHhcCCeEEEeCCCCCc-c----cc--CCCeEECcCHHHHHHHhCC
Confidence 345567889999985 33221 1234667777778889999999986421 1 11 1378999999999999984
Q ss_pred cccCCCCCCcHHHHHHHHHHhhCC-eEEEEcCC-ceEEEcCCe-EEEEeeCCCC-CCCCCchHHHHHHHHHHHhhhhccC
Q 017155 245 VLNCEVNDRDAPELLQSLAKQIGG-VTILQKGK-SDLISDGEI-AKSVSIYGSP-RRCGGQGDILSGSVAVFLSWARAKG 320 (376)
Q Consensus 245 ~~~~~v~~~d~~~~a~~la~~~~~-~vVllKG~-~~vi~~~~~-~~~i~~~g~~-~~t~GsGDvLaG~Iaa~LA~~~~g~ 320 (376)
.. +.++..+.++++.++++. .+|+..|. +.++++++. .+.+...... ..++|+||+|+|.+++.++ +|.
T Consensus 206 ~~----~~~~~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~---~g~ 278 (473)
T PRK11316 206 CK----DEAELVEKGMKLIADYDLSALLVTRSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALA---AGN 278 (473)
T ss_pred CC----CHHHHHHHHHHHHHhcCCCEEEEEecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHH---cCC
Confidence 21 223455667777765543 33444444 555665444 3444322122 2499999988887777777 777
Q ss_pred Cc
Q 017155 321 KA 322 (376)
Q Consensus 321 ~~ 322 (376)
++
T Consensus 279 ~~ 280 (473)
T PRK11316 279 SL 280 (473)
T ss_pred CH
Confidence 64
No 43
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=98.99 E-value=9.9e-09 Score=98.30 Aligned_cols=146 Identities=16% Similarity=0.078 Sum_probs=89.8
Q ss_pred HhhccCCEEEEcCCCC-CCHHHHHHHHHHHHHhhcCCCCEEEeCCccccccc---chhhhcc-C-CCeeEcCCHHHHHHH
Q 017155 168 KWMERFDCLVVGPGLG-RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTN---SIDLVSG-Y-PLAVLTPNVNEYKRL 241 (376)
Q Consensus 168 ~~l~~~davvIGpGl~-~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~---~~~ll~~-~-~~~vITPN~~E~~~L 241 (376)
+.++++|++.++.-.+ ..+...+.+.++++.+++.++++++||.....+.. ..+.++. . ..++|+||..|++.|
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~l 199 (294)
T cd01166 120 AALAGADHLHLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEAL 199 (294)
T ss_pred HHHhCCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHHH
Confidence 3457899999974222 12222466778888888889999999985432100 0111111 2 278999999999999
Q ss_pred hcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCC-CCCCCchHHHHHHHHHHHhhhhcc
Q 017155 242 VQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSP-RRCGGQGDILSGSVAVFLSWARAK 319 (376)
Q Consensus 242 ~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~-~~t~GsGDvLaG~Iaa~LA~~~~g 319 (376)
++... ..+..+.++++ +.....+|+..|. +.++++++..+++.....+ ..++|+||+|.|.+.+.++ +|
T Consensus 200 ~~~~~-----~~~~~~~~~~l-~~g~~~viit~G~~G~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~---~g 270 (294)
T cd01166 200 LGDED-----PTDAAERALAL-ALGVKAVVVKLGAEGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGFLAGLL---EG 270 (294)
T ss_pred hCCCC-----chhHHHHHHhh-cCCccEEEEEEcCCceEEEECCceEEeCCCCcccccCCCchHHHHHHHHHHHH---cC
Confidence 87531 12445555555 3322234444454 5666677666656532222 2599999988777777777 77
Q ss_pred CCc
Q 017155 320 GKA 322 (376)
Q Consensus 320 ~~~ 322 (376)
+++
T Consensus 271 ~~~ 273 (294)
T cd01166 271 WDL 273 (294)
T ss_pred CCH
Confidence 765
No 44
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=98.99 E-value=2.6e-08 Score=96.05 Aligned_cols=142 Identities=15% Similarity=0.279 Sum_probs=88.5
Q ss_pred HHHHHhhccCCEEEEc-CCCC-CCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHH
Q 017155 164 AEVDKWMERFDCLVVG-PGLG-RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRL 241 (376)
Q Consensus 164 ~~l~~~l~~~davvIG-pGl~-~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L 241 (376)
+.+.+.++++|+++++ .+.+ ..+ +.+..+++.+++.++++++|+..... ..+ ..+++|+||..|+..|
T Consensus 126 ~~~~~~l~~~~~v~~s~~~~~~~~~---~~~~~~~~~a~~~~~~v~~D~~~~~~-----~~~--~~~d~l~~n~~E~~~l 195 (304)
T cd01172 126 ERIAERLPEADVVILSDYGKGVLTP---RVIEALIAAARELGIPVLVDPKGRDY-----SKY--RGATLLTPNEKEAREA 195 (304)
T ss_pred HHHHHhhccCCEEEEEcCCCCccCH---HHHHHHHHHHHhcCCCEEEeCCCcch-----hhc--cCCcEeCCCHHHHHHH
Confidence 3344557899999994 2111 122 45667777777889999999986432 112 1378999999999999
Q ss_pred hcccccCCCCCCcHHHHHHHHHHhhCC-eEEEEcCC-ceEEEc-CCeEEEEeeCCCCC-CCCCchHH-HHHHHHHHHhhh
Q 017155 242 VQKVLNCEVNDRDAPELLQSLAKQIGG-VTILQKGK-SDLISD-GEIAKSVSIYGSPR-RCGGQGDI-LSGSVAVFLSWA 316 (376)
Q Consensus 242 ~g~~~~~~v~~~d~~~~a~~la~~~~~-~vVllKG~-~~vi~~-~~~~~~i~~~g~~~-~t~GsGDv-LaG~Iaa~LA~~ 316 (376)
++.... +..+..+.++++.++.+. .+|+..|. +.++++ +++.+++....... .++|+||. .||+++++ .
T Consensus 196 ~~~~~~---~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l-~-- 269 (304)
T cd01172 196 LGDEIN---DDDELEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALAL-A-- 269 (304)
T ss_pred hCCCCC---ChHHHHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHH-H--
Confidence 986421 123455566767654332 34555555 677777 66566565322222 59999995 55555555 4
Q ss_pred hccCCc
Q 017155 317 RAKGKA 322 (376)
Q Consensus 317 ~~g~~~ 322 (376)
+|+++
T Consensus 270 -~g~~~ 274 (304)
T cd01172 270 -AGADL 274 (304)
T ss_pred -cCCCH
Confidence 67664
No 45
>PRK11142 ribokinase; Provisional
Probab=98.98 E-value=2.3e-08 Score=96.70 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=92.4
Q ss_pred hhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHH
Q 017155 157 CISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVN 236 (376)
Q Consensus 157 ~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~ 236 (376)
.+++++++.+.+.+.++|++++.... . .+.+..+++.+++.++|+++|+.....+. .++++ .+++++||..
T Consensus 117 ~~~~~~~~~~~~~l~~~~~v~~~~~~--~---~~~~~~~~~~a~~~g~~v~~d~~~~~~~~--~~~~~--~~dil~~n~~ 187 (306)
T PRK11142 117 ALTPALVEAHRELIANADALLMQLET--P---LETVLAAAKIAKQHGTKVILNPAPARELP--DELLA--LVDIITPNET 187 (306)
T ss_pred cCCHHHHHHHHhhhccCCEEEEeCCC--C---HHHHHHHHHHHHHcCCEEEEECCCCcccC--HHHHh--hCCEEcCCHH
Confidence 34555566555667899999987432 2 23466677778888999999997432111 12332 3789999999
Q ss_pred HHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchH-HHHHHHHHHH
Q 017155 237 EYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGD-ILSGSVAVFL 313 (376)
Q Consensus 237 E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGD-vLaG~Iaa~L 313 (376)
|+..|+|.... +..+..+.++.+.+.....+|+..|+ +.++.++++.+++....... .++|+|| ..||++++++
T Consensus 188 Ea~~l~g~~~~---~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~ 264 (306)
T PRK11142 188 EAEKLTGIRVE---DDDDAAKAAQVLHQKGIETVLITLGSRGVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTALL 264 (306)
T ss_pred HHHHHhCCCCC---ChHHHHHHHHHHHHhCCCeEEEEECCCcEEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHHH
Confidence 99999986421 12344556666655422234555555 66666666555554222222 4999999 5556666554
Q ss_pred hhhhccCCc
Q 017155 314 SWARAKGKA 322 (376)
Q Consensus 314 A~~~~g~~~ 322 (376)
+|.++
T Consensus 265 ----~g~~~ 269 (306)
T PRK11142 265 ----EGKPL 269 (306)
T ss_pred ----CCCCH
Confidence 56654
No 46
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=98.96 E-value=3.6e-08 Score=96.07 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=87.8
Q ss_pred HHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhcccc
Q 017155 167 DKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVL 246 (376)
Q Consensus 167 ~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~ 246 (376)
.++++++|++.+..-++.. ...+.+.++++.+++.+.++++|+....+. +.+ ...+++++||..|+..|+|...
T Consensus 126 ~~~l~~~d~v~~~g~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~-~~~~~~l~~n~~E~~~l~g~~~ 199 (312)
T PRK09513 126 LSWLGQFDMVAVSGSLPRG-VSPEAFTDWMTRLRSQCPCIIFDSSREALV----AGL-KAAPWLVKPNRRELEIWAGRKL 199 (312)
T ss_pred HhhcCCCCEEEEECCCCCC-CCHHHHHHHHHHHHhcCCEEEEECChHHHH----HHh-ccCCeEEcCCHHHHHHHhCCCC
Confidence 4557899998776323322 223466777888888889999999743211 112 1236899999999999998642
Q ss_pred cCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhhhccCCc
Q 017155 247 NCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 247 ~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~~~g~~~ 322 (376)
. +.++..+.++.+.+.....+|+..|. +.+++++++.+...+...+. .++|+||++.|.+.+.+. +|+++
T Consensus 200 ~---~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~---~g~~~ 271 (312)
T PRK09513 200 P---ELKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLL---MRESS 271 (312)
T ss_pred C---CHHHHHHHHHHHHHcCCCEEEEEeCCCCcEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHH---cCCCH
Confidence 1 22344556666765422234444555 56666655544444222222 499999966555555555 77765
No 47
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=98.95 E-value=1.4e-07 Score=90.63 Aligned_cols=206 Identities=21% Similarity=0.216 Sum_probs=122.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhc-ccCe---eEEecccCCcccccccCCceeeecccccccccCCCchhhhhhhhhhh
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKI-GADL---SHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKI 162 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~-Gagl---vt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (376)
+|+.|--.-.|+-+|.-|+.=+++. |... .|+.-+.... . ......+. + ++.- .+.
T Consensus 2 ~vlaIqShVv~G~vGn~AA~f~lq~~G~~V~~vpTV~fSnHtg--y-g~~~g~v~---~----------~e~l----~~~ 61 (281)
T COG2240 2 RILAIQSHVVYGSVGNSAAIFPLQRLGLDVWAVPTVQFSNHTG--Y-GKWTGIVM---P----------PEQL----ADL 61 (281)
T ss_pred cEEEEeeeEeecccccHhHHHHHHHcCCceeeeceEEecCCCC--C-CCCCCcCC---C----------HHHH----HHH
Confidence 5777777777888888888777666 6543 3333222111 1 01111111 0 0000 122
Q ss_pred HHHHHH--hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCC--EEEeCCccc-----ccccchhhhc-c-CC-Cee
Q 017155 163 LAEVDK--WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVP--IVIDGDGLF-----LVTNSIDLVS-G-YP-LAV 230 (376)
Q Consensus 163 ~~~l~~--~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~p--vVLDpdgl~-----ll~~~~~ll~-~-~~-~~v 230 (376)
++.+.+ ++..+|+|..|- ++ +.++.+.+..+++..++.+.. +++||++-. .-....+... + .| .++
T Consensus 62 l~~l~~~~~~~~~davltGY-lg-s~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~Adi 139 (281)
T COG2240 62 LNGLEAIDKLGECDAVLTGY-LG-SAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADI 139 (281)
T ss_pred HHHHHhcccccccCEEEEcc-CC-CHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhE
Confidence 333444 566899999984 44 567788888888888776544 899998532 1111112221 2 34 799
Q ss_pred EcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCc-------eEEEcCC---eEEEEeeCCCCCCCCC
Q 017155 231 LTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKS-------DLISDGE---IAKSVSIYGSPRRCGG 300 (376)
Q Consensus 231 ITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~-------~vi~~~~---~~~~i~~~g~~~~t~G 300 (376)
||||..|++.|+|.++. +.+|..++++.|.+... ..|++++-. ++++.+. ..+.+. ...+....|
T Consensus 140 iTPN~fELe~Ltg~~~~---~~~da~~aa~~L~~~gp-~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~~~~~G 214 (281)
T COG2240 140 ITPNIFELEILTGKPLN---TLDDAVKAARKLGADGP-KIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLVPFIPNG 214 (281)
T ss_pred eCCCHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCC-CEEEEecccccCCCCceEEEeccchhhhhhhh-hcCCCCCCC
Confidence 99999999999998753 34678888888887443 566777642 2343322 112221 123334899
Q ss_pred chHHHHHHHHHHHhhhhccCCc
Q 017155 301 QGDILSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 301 sGDvLaG~Iaa~LA~~~~g~~~ 322 (376)
+||.+|+++.+-+- .|.+.
T Consensus 215 tGDL~sallla~lL---~g~~~ 233 (281)
T COG2240 215 TGDLFSALLLARLL---EGLSL 233 (281)
T ss_pred chHHHHHHHHHHHH---cCCCH
Confidence 99999999988665 66553
No 48
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=98.94 E-value=4.2e-08 Score=94.65 Aligned_cols=143 Identities=18% Similarity=0.149 Sum_probs=88.7
Q ss_pred HhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhccccc
Q 017155 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLN 247 (376)
Q Consensus 168 ~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~~ 247 (376)
+.++++|++++..-+... ...+.+..+++.+++.++++++|+....+. +.+. ...+|++||..|++.|+|....
T Consensus 123 ~~l~~~~~v~~~g~~~~~-~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~----~~~~-~~~~i~~~n~~E~~~l~g~~~~ 196 (304)
T TIGR03828 123 AQLAEGDWLVLSGSLPPG-VPPDFYAELIALAREKGAKVILDTSGEALR----DGLK-AKPFLIKPNDEELEELFGRELK 196 (304)
T ss_pred HhccCCCEEEEECCCCCC-CCHHHHHHHHHHHHHcCCEEEEECChHHHH----HHHh-cCCcEECcCHHHHHHHhCCCCC
Confidence 356789999996322211 112356677777888899999999753211 1121 2368999999999999986421
Q ss_pred CCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhhhccCCc
Q 017155 248 CEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 248 ~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~~~g~~~ 322 (376)
+.++..+.++.+.+.....+|+..|. +.+++++++.+++.....+. .++|+||.|+|.+.+.+. +|.++
T Consensus 197 ---~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~---~g~~~ 267 (304)
T TIGR03828 197 ---TLEEIIEAARELLDLGAENVLISLGADGALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLE---SGLSL 267 (304)
T ss_pred ---CHHHHHHHHHHHHHcCCCEEEEccCCCCcEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHH---cCCCH
Confidence 22345566777766533344554465 66666666555554322222 499999977666666666 67664
No 49
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=98.94 E-value=8.2e-08 Score=93.42 Aligned_cols=147 Identities=19% Similarity=0.276 Sum_probs=87.7
Q ss_pred HHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhcc-CCCeeEcCCHHHHHHHhc
Q 017155 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-YPLAVLTPNVNEYKRLVQ 243 (376)
Q Consensus 165 ~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~-~~~~vITPN~~E~~~L~g 243 (376)
.+.+.++++|++.+..-++... ..+.+..+++.+++.++++++|+..... .+++.. ..+++|+||..|+..|+|
T Consensus 119 ~~~~~~~~~~~v~~~g~~~~~~-~~~~~~~~~~~a~~~g~~v~~D~~~~~~----~~~~~~~~~~dii~~n~~E~~~l~g 193 (309)
T PRK13508 119 HFKQLLESVEVVAISGSLPAGL-PVDYYAQLIELANQAGKPVVLDCSGAAL----QAVLESPYKPTVIKPNIEELSQLLG 193 (309)
T ss_pred HHHHhccCCCEEEEeCCCCCCc-CHHHHHHHHHHHHHCCCEEEEECCcHHH----HHHHhccCCceEEccCHHHHHHHhC
Confidence 3445678899999973232211 1245677777788889999999975421 122222 248999999999999998
Q ss_pred ccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchH-HHHHHHHHHHhhhhccC
Q 017155 244 KVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGD-ILSGSVAVFLSWARAKG 320 (376)
Q Consensus 244 ~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGD-vLaG~Iaa~LA~~~~g~ 320 (376)
.+... +.++..+.++++.+..-..+|+..|. +.++.++++.+.+.....+. .++|+|| ..||++++++ +|.
T Consensus 194 ~~~~~--~~~~~~~~~~~~~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~----~g~ 267 (309)
T PRK13508 194 KEVSE--DLDELKEVLQQPLFEGIEWIIVSLGADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLL----HQE 267 (309)
T ss_pred CCCCC--CHHHHHHHHHHHHHcCCCEEEEecCCCceEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHH----cCC
Confidence 54210 11234444455444321234444454 66676666655554222222 4999999 5666666665 566
Q ss_pred Cc
Q 017155 321 KA 322 (376)
Q Consensus 321 ~~ 322 (376)
++
T Consensus 268 ~~ 269 (309)
T PRK13508 268 DD 269 (309)
T ss_pred CH
Confidence 54
No 50
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=98.93 E-value=9.6e-08 Score=92.92 Aligned_cols=148 Identities=18% Similarity=0.268 Sum_probs=88.2
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccC-CCeeEcCCHHHHHHHh
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY-PLAVLTPNVNEYKRLV 242 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~-~~~vITPN~~E~~~L~ 242 (376)
+...++++++|++.++.-+.... ....+..+++.+++.++++++|+....+. .+++.. .+++|+||..|+..|+
T Consensus 118 ~~~~~~~~~~~~v~~~g~~~~~~-~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~~~~dil~~n~~E~~~l~ 192 (309)
T TIGR01231 118 KHFEQLLEKVEVVAISGSLPKGL-PQDYYAQIIERCQNKGVPVVLDCSGATLQ----TVLENPAKPTVIKPNIEELSQLL 192 (309)
T ss_pred HHHHHHhccCCEEEEECCCCCCc-CHHHHHHHHHHHHhCCCeEEEECChHHHH----HHHhccCCCeEEcCCHHHHHHHh
Confidence 33445578899999964332211 12456777888888899999999754321 122222 3799999999999999
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHH-HHHHHHHHHhhhhcc
Q 017155 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDI-LSGSVAVFLSWARAK 319 (376)
Q Consensus 243 g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDv-LaG~Iaa~LA~~~~g 319 (376)
|..... +.++..+.++++.+.....+|+.-|. +.+++++++.+.+.....+. .++|+||. .||++++++ +|
T Consensus 193 g~~~~~--~~~~~~~~~~~~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~----~g 266 (309)
T TIGR01231 193 NQELTE--DLESLKQALSQPLFSGIEWIIVSLGAQGAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALL----NH 266 (309)
T ss_pred CCCCCC--CHHHHHHHHHHHHHcCCCEEEEccCCCceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHH----cC
Confidence 853210 11234444555443321233444454 66777776655554333333 49999995 555555554 56
Q ss_pred CCc
Q 017155 320 GKA 322 (376)
Q Consensus 320 ~~~ 322 (376)
+++
T Consensus 267 ~~~ 269 (309)
T TIGR01231 267 ESD 269 (309)
T ss_pred CCH
Confidence 654
No 51
>PRK09850 pseudouridine kinase; Provisional
Probab=98.90 E-value=1e-07 Score=92.96 Aligned_cols=149 Identities=18% Similarity=0.208 Sum_probs=84.6
Q ss_pred hhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHH
Q 017155 159 SSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEY 238 (376)
Q Consensus 159 ~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~ 238 (376)
..+.++...+.++.+|++++..++ .. +.+..+++.+ .++++++||..........++++ .+++|+||..|+
T Consensus 121 ~~~~~~~~~~~~~~~~~v~~~~~~--~~---~~~~~~~~~~--~g~~v~~D~~~~~~~~~~~~~l~--~~dil~~N~~Ea 191 (313)
T PRK09850 121 TAEYLAQHREFIQRAKVIVADCNI--SE---EALAWILDNA--ANVPVFVDPVSAWKCVKVRDRLN--QIHTLKPNRLEA 191 (313)
T ss_pred CHHHHHHHHHHHhcCCEEEEeCCC--CH---HHHHHHHHhc--cCCCEEEEcCCHHHHHHHHhhhc--cceEEccCHHHH
Confidence 334444445557789999886543 22 2344455433 47899999985321110012222 379999999999
Q ss_pred HHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCC-eEEEEeeCCCC-CCCCCchHHHHHHHHHHHhh
Q 017155 239 KRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGE-IAKSVSIYGSP-RRCGGQGDILSGSVAVFLSW 315 (376)
Q Consensus 239 ~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~-~~~~i~~~g~~-~~t~GsGDvLaG~Iaa~LA~ 315 (376)
..|+|.... +..+..+.++.+.+..-..+|+..|+ +.++.+++ ..+++...... ..++|+||.|.|.+.+.+.
T Consensus 192 ~~l~g~~~~---~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~- 267 (313)
T PRK09850 192 ETLSGIALS---GREDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWV- 267 (313)
T ss_pred HHHhCCCCC---CHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHH-
Confidence 999985421 12345566667655422244555565 66666533 33334321112 2499999965554444445
Q ss_pred hhccCCc
Q 017155 316 ARAKGKA 322 (376)
Q Consensus 316 ~~~g~~~ 322 (376)
+|+++
T Consensus 268 --~g~~~ 272 (313)
T PRK09850 268 --DGMPF 272 (313)
T ss_pred --cCCCH
Confidence 67664
No 52
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=98.87 E-value=1.1e-07 Score=91.22 Aligned_cols=150 Identities=16% Similarity=0.218 Sum_probs=92.2
Q ss_pred hhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHH
Q 017155 158 ISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNE 237 (376)
Q Consensus 158 ~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E 237 (376)
+++++++++.+.+..+|++++.... . .+.+..+++.+++.++++++|+..... ....++++ .+++++||..|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~v~~D~~~~~~-~~~~~~~~--~~d~l~~n~~E 181 (293)
T TIGR02152 110 LTPEDIDAAEALIAESDIVLLQLEI--P---LETVLEAAKIAKKHGVKVILNPAPAIK-DLDDELLS--LVDIITPNETE 181 (293)
T ss_pred CCHHHHHHHHhhhccCCEEEEecCC--C---HHHHHHHHHHHHHcCCEEEEECCcCcc-cchHHHHh--cCCEEccCHHH
Confidence 4455566666667889999987422 2 234666777777789999999975311 00122332 27899999999
Q ss_pred HHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchH-HHHHHHHHHHh
Q 017155 238 YKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGD-ILSGSVAVFLS 314 (376)
Q Consensus 238 ~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGD-vLaG~Iaa~LA 314 (376)
+..|++.... +..+..+.++.+.+..-..+|+..|+ +.++++++..+.+....... .++|+|| ..||++++++
T Consensus 182 ~~~l~~~~~~---~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~- 257 (293)
T TIGR02152 182 AEILTGIEVT---DEEDAEKAAEKLLEKGVKNVIITLGSKGALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAFAVALA- 257 (293)
T ss_pred HHHHhCCCCC---CcchHHHHHHHHHHcCCCeEEEEeCCCceEEEeCCceeEccCCCCceeCCCCcHHHHHHHHHHHHH-
Confidence 9999886421 22345566677766422234444555 55666666655443222222 4999999 5566666654
Q ss_pred hhhccCCc
Q 017155 315 WARAKGKA 322 (376)
Q Consensus 315 ~~~~g~~~ 322 (376)
+|.++
T Consensus 258 ---~g~~~ 262 (293)
T TIGR02152 258 ---EGKSL 262 (293)
T ss_pred ---CCCCH
Confidence 56654
No 53
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=98.80 E-value=4.8e-07 Score=90.90 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=99.2
Q ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccccccc-chh---hhccCCCeeEcCCHHHHHHHhcc
Q 017155 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTN-SID---LVSGYPLAVLTPNVNEYKRLVQK 244 (376)
Q Consensus 169 ~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~-~~~---ll~~~~~~vITPN~~E~~~L~g~ 244 (376)
.++.++++.+. ....+ .+.+.++++.+++.++++++|+........ +.. ++....+++|.||..|+..|++.
T Consensus 174 ~~~~~~~v~v~-~~~~~---~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~ 249 (367)
T PLN02379 174 DFKGSKWLVLR-YGFYN---LEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRG 249 (367)
T ss_pred HHhcCCEEEEE-cccCC---HHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcC
Confidence 46789999998 32223 245677788888899999999986543222 122 22111379999999999999864
Q ss_pred cccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCC-CC-CCCCCchHHHH-HHHHHHHhhhhccC
Q 017155 245 VLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYG-SP-RRCGGQGDILS-GSVAVFLSWARAKG 320 (376)
Q Consensus 245 ~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g-~~-~~t~GsGDvLa-G~Iaa~LA~~~~g~ 320 (376)
.. ..+..+..+.+.+... .+|+..|. +.+++++++.+.+.... .. ..|+|+||+|+ |+++++ . +|+
T Consensus 250 ~~-----~~~~~~~~~~l~~~~~-~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl-~---~G~ 319 (367)
T PLN02379 250 EQ-----ESDPEAALEFLAKYCN-WAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGL-I---KGL 319 (367)
T ss_pred CC-----CCCHHHHHHHHHhcCC-EEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHH-H---CCC
Confidence 21 1233333344433334 44555565 77888877766665322 12 25999999654 555554 4 676
Q ss_pred CcccCCCChhHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHH
Q 017155 321 KATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDI 361 (376)
Q Consensus 321 ~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~~~~~a~di 361 (376)
++ ..++..|++ +|.....+.|.-....++
T Consensus 320 ~l--------~~a~~~g~~----aAa~vi~~~G~~~~~~~~ 348 (367)
T PLN02379 320 SL--------EECCKVGAC----SGGSVVRALGGEVTPENW 348 (367)
T ss_pred CH--------HHHHHHHHH----HHHHHHhccCCCCChHHH
Confidence 64 344444442 444444455544555553
No 54
>PTZ00292 ribokinase; Provisional
Probab=98.79 E-value=2.5e-07 Score=90.62 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=88.3
Q ss_pred hhhhhhHHHHHHhhcc-CCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccccc---ccchhhhccCCCeeEc
Q 017155 157 CISSKILAEVDKWMER-FDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLV---TNSIDLVSGYPLAVLT 232 (376)
Q Consensus 157 ~~~~~~~~~l~~~l~~-~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll---~~~~~ll~~~~~~vIT 232 (376)
.+++++++...+.+.+ ++++++...+. .+.+.++++.+++.++++++|+...... ....++++ ..++++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~l~--~~dii~ 203 (326)
T PTZ00292 131 ALTPQMVDAQTDNIQNICKYLICQNEIP-----LETTLDALKEAKERGCYTVFNPAPAPKLAEVEIIKPFLK--YVSLFC 203 (326)
T ss_pred cCCHHHHHHHHHHhhhhCCEEEECCCCC-----HHHHHHHHHHHHHcCCEEEEECCCCccccccccHHHHHh--cCCEEc
Confidence 3455556554454566 88888864332 1345566777777899999999743221 11112222 278999
Q ss_pred CCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCe-EEEEeeCCCCC-CCCCchHHH-HHH
Q 017155 233 PNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEI-AKSVSIYGSPR-RCGGQGDIL-SGS 308 (376)
Q Consensus 233 PN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~-~~~i~~~g~~~-~t~GsGDvL-aG~ 308 (376)
||..|+..|+|.... +.++..+.++.+.+..-..+|+..|. +.++++++. .+++....... .++|+||.| ||+
T Consensus 204 ~n~~E~~~l~g~~~~---~~~~~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~ 280 (326)
T PTZ00292 204 VNEVEAALITGMEVT---DTESAFKASKELQQLGVENVIITLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSM 280 (326)
T ss_pred CCHHHHHHHhCCCCC---ChhHHHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHHH
Confidence 999999999886421 12344455566655322234554554 666666543 34454222222 499999955 555
Q ss_pred HHHHHhhhhccCCc
Q 017155 309 VAVFLSWARAKGKA 322 (376)
Q Consensus 309 Iaa~LA~~~~g~~~ 322 (376)
+++++ +|+++
T Consensus 281 l~~l~----~g~~~ 290 (326)
T PTZ00292 281 AYFMS----RGKDL 290 (326)
T ss_pred HHHHH----CCCCH
Confidence 55554 56654
No 55
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=98.78 E-value=3.3e-07 Score=87.63 Aligned_cols=149 Identities=18% Similarity=0.202 Sum_probs=86.5
Q ss_pred hhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHH
Q 017155 161 KILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKR 240 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~ 240 (376)
+..+.+.+.+..+|++.+..-+ .. +.+..+++.+++.+.++++||.....+....+++ ...++|+||..|+..
T Consensus 117 ~~~~~~~~~l~~~~~v~~~~~~--~~---~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~--~~~dii~~n~~E~~~ 189 (288)
T cd01941 117 DFLRKIREALKEAKPIVVDANL--PE---EALEYLLALAAKHGVPVAFEPTSAPKLKKLFYLL--HAIDLLTPNRAELEA 189 (288)
T ss_pred HHHHHHHHHHhcCCEEEEeCCC--CH---HHHHHHHHhhhhcCCcEEEEccchHHhccchhhc--ccceEEeCCHHHHHH
Confidence 3344556667889999885322 22 2456677777778899999986432111000122 137999999999999
Q ss_pred HhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcC---CeEEEEee-CCCCC-CCCCchHHHHHHHHHHHh
Q 017155 241 LVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDG---EIAKSVSI-YGSPR-RCGGQGDILSGSVAVFLS 314 (376)
Q Consensus 241 L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~---~~~~~i~~-~g~~~-~t~GsGDvLaG~Iaa~LA 314 (376)
++|.... +..+..+.++.+.+.....+|+..|. +.+++++ +..+++.. ..... -++|+||+|.|.+...++
T Consensus 190 ~~~~~~~---~~~~~~~~~~~~~~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~ 266 (288)
T cd01941 190 LAGALIE---NNEDENKAAKILLLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLL 266 (288)
T ss_pred HhCcccC---CchhHHHHHHHHHHcCCcEEEEEeCCCcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHH
Confidence 9986421 11222233444444322244555565 6677665 44444542 11122 499999976666655566
Q ss_pred hhhccCCc
Q 017155 315 WARAKGKA 322 (376)
Q Consensus 315 ~~~~g~~~ 322 (376)
+|.++
T Consensus 267 ---~g~~~ 271 (288)
T cd01941 267 ---EGMSL 271 (288)
T ss_pred ---cCCCH
Confidence 67665
No 56
>PRK09954 putative kinase; Provisional
Probab=98.75 E-value=4.7e-07 Score=90.32 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=85.8
Q ss_pred hhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHH
Q 017155 157 CISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVN 236 (376)
Q Consensus 157 ~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~ 236 (376)
.++++.++...+.+...+.+++...++ .+ .+..+++.+ .++++++||..........++++ ..++++||..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~---~~~~~~~~a--~~~~v~~D~~~~~~~~~~~~~l~--~~dil~~n~~ 242 (362)
T PRK09954 172 QLTPQLLNGSRDLIRHAGVVLADCNLT--AE---ALEWVFTLA--DEIPVFVDTVSEFKAGKIKHWLA--HIHTLKPTQP 242 (362)
T ss_pred cCCHHHHHHHHHHHhcCCEEEEECCCC--HH---HHHHHHHhC--CCCcEEEECCCHHHhhhhhhhhc--cccEEecCHH
Confidence 344555556566667889988875432 22 344445444 47899999986421111112222 2799999999
Q ss_pred HHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCC-eEEEEeeCCCCC-CCCCchH-HHHHHHHHH
Q 017155 237 EYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGE-IAKSVSIYGSPR-RCGGQGD-ILSGSVAVF 312 (376)
Q Consensus 237 E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~-~~~~i~~~g~~~-~t~GsGD-vLaG~Iaa~ 312 (376)
|++.|+|.... ++.+..+.++.+.+.....+|+..|. +.++++++ ..+++....... .++|+|| ..||+++++
T Consensus 243 Ea~~l~g~~~~---~~~~~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l 319 (362)
T PRK09954 243 ELEILWGQAIT---SDADRNAAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSF 319 (362)
T ss_pred HHHHHcCCCCC---CHHHHHHHHHHHHHcCCCEEEEEeCCccEEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHH
Confidence 99999986421 12244456666665432245555565 55555533 334343222222 4999999 455555555
Q ss_pred HhhhhccCCc
Q 017155 313 LSWARAKGKA 322 (376)
Q Consensus 313 LA~~~~g~~~ 322 (376)
+ +|+++
T Consensus 320 ~----~g~~~ 325 (362)
T PRK09954 320 L----EGYSF 325 (362)
T ss_pred H----cCCCH
Confidence 4 57665
No 57
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=98.75 E-value=2.6e-07 Score=88.67 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=84.2
Q ss_pred HhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc-ccccc---hhhhcc-C-CCeeEcCCHHHHHHH
Q 017155 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-LVTNS---IDLVSG-Y-PLAVLTPNVNEYKRL 241 (376)
Q Consensus 168 ~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~-ll~~~---~~ll~~-~-~~~vITPN~~E~~~L 241 (376)
+.++++|++.++.-...++...+.+.++++.+++.++++++||.... +.... .+.++. . ..++++||..|+..|
T Consensus 116 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l 195 (295)
T cd01167 116 DLLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELL 195 (295)
T ss_pred hHhccCCEEEEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHH
Confidence 34578999999742111222235677788888888999999997432 11110 111111 2 278999999999999
Q ss_pred hcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhhhcc
Q 017155 242 VQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARAK 319 (376)
Q Consensus 242 ~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~~~g 319 (376)
+|.. +..+.++.+.+.....+|+..|+ +.+++++++.+++.....+. .++|+||+|.|.+.+.++ +|
T Consensus 196 ~~~~--------~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~~~~l~---~g 264 (295)
T cd01167 196 FGEE--------DPEEIAALLLLFGLKLVLVTRGADGALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGLLAQLL---SR 264 (295)
T ss_pred hCCC--------CHHHHHHHHhhcCCCEEEEecCCcceEEEECCcceeeCCCCcceeeCCCccHHHHHHHHHHHH---hC
Confidence 8743 12234455544432244554555 67777776666565322223 499999966555555555 56
Q ss_pred C
Q 017155 320 G 320 (376)
Q Consensus 320 ~ 320 (376)
.
T Consensus 265 ~ 265 (295)
T cd01167 265 G 265 (295)
T ss_pred C
Confidence 5
No 58
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=98.75 E-value=3e-07 Score=95.24 Aligned_cols=142 Identities=11% Similarity=0.041 Sum_probs=86.9
Q ss_pred HHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc--ccccc-------hhhhccCCCeeEcCCHHH
Q 017155 167 DKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF--LVTNS-------IDLVSGYPLAVLTPNVNE 237 (376)
Q Consensus 167 ~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~--ll~~~-------~~ll~~~~~~vITPN~~E 237 (376)
.+.++.+|++.++.-... +...+.+.++++.+++.++++++||.... +.... .++++ ..++++||..|
T Consensus 219 ~~~l~~adiv~lsg~~~~-~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~--~~Dil~~Ne~E 295 (470)
T PLN02341 219 KMAIRQSKALFCNGYVFD-ELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLR--MSDVLLLTSEE 295 (470)
T ss_pred HhhhhcCCEEEEeceeCC-cCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHh--hCCEEEecHHH
Confidence 345678999998732111 11234677788888889999999997531 11100 12222 27999999999
Q ss_pred HHHHhcccccCCCCCCcHHHHHHHHHHhh-C-CeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHH
Q 017155 238 YKRLVQKVLNCEVNDRDAPELLQSLAKQI-G-GVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFL 313 (376)
Q Consensus 238 ~~~L~g~~~~~~v~~~d~~~~a~~la~~~-~-~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~L 313 (376)
+..|+|.. +..+.++.+.++. + ..+|+..|. +.+++++++.+++.....+. .|+|+||.|.|.+.+.+
T Consensus 296 a~~l~g~~--------~~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agfl~gl 367 (470)
T PLN02341 296 AEALTGIR--------NPILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGY 367 (470)
T ss_pred HHHHhCCC--------CHHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHHHHHH
Confidence 99998742 3455667776542 1 123444444 77888777766665332222 49999995544444444
Q ss_pred hhhhccCCc
Q 017155 314 SWARAKGKA 322 (376)
Q Consensus 314 A~~~~g~~~ 322 (376)
. +|.++
T Consensus 368 l---~G~~l 373 (470)
T PLN02341 368 I---HNLPL 373 (470)
T ss_pred H---cCCCH
Confidence 4 56654
No 59
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=98.75 E-value=2.2e-07 Score=90.34 Aligned_cols=140 Identities=18% Similarity=0.225 Sum_probs=86.8
Q ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccc----hhhhccCCCeeEcCCHHHHHHHhcc
Q 017155 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNS----IDLVSGYPLAVLTPNVNEYKRLVQK 244 (376)
Q Consensus 169 ~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~----~~ll~~~~~~vITPN~~E~~~L~g~ 244 (376)
.++++|++.++.-..... .+.+..+++.+++.++++++|+..-...... .+++. ..++++||..|++.|+|.
T Consensus 142 ~l~~~~~v~~~~~~~~~~--~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~--~~d~l~~n~~E~~~l~~~ 217 (312)
T cd01168 142 LLAKAKYLYLEGYLLTVP--PEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLP--YVDILFGNEEEAEALAEA 217 (312)
T ss_pred HHccCCEEEEEEEecCCC--HHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHh--hCCEEEeCHHHHHHHhCC
Confidence 467899999974211111 1466777777777899999999742111000 12221 379999999999999874
Q ss_pred cccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCC-CCC-CCCCchHHHH-HHHHHHHhhhhccC
Q 017155 245 VLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYG-SPR-RCGGQGDILS-GSVAVFLSWARAKG 320 (376)
Q Consensus 245 ~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g-~~~-~t~GsGDvLa-G~Iaa~LA~~~~g~ 320 (376)
+ ..+..+.++.+.++....+|+..|. +.+++++++.+++.... .+. .++|+||.|. |+++++ . +|+
T Consensus 218 ~------~~~~~~~a~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l-~---~g~ 287 (312)
T cd01168 218 E------TTDDLEAALKLLALRCRIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGL-V---QGE 287 (312)
T ss_pred C------CCChHHHHHHHHhcCCCEEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHH-H---cCC
Confidence 2 1234567788877643345555555 66777766666565322 222 5999999554 555554 4 676
Q ss_pred Cc
Q 017155 321 KA 322 (376)
Q Consensus 321 ~~ 322 (376)
++
T Consensus 288 ~~ 289 (312)
T cd01168 288 PL 289 (312)
T ss_pred CH
Confidence 65
No 60
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=98.71 E-value=7.1e-07 Score=91.40 Aligned_cols=146 Identities=14% Similarity=0.084 Sum_probs=89.6
Q ss_pred HhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccccccc-chhhhcc-C-CCeeEcCCHHHHHHHhcc
Q 017155 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTN-SIDLVSG-Y-PLAVLTPNVNEYKRLVQK 244 (376)
Q Consensus 168 ~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~-~~~ll~~-~-~~~vITPN~~E~~~L~g~ 244 (376)
+.++.+|++.+..-+...+...+.+.++++.+++.++++++|+........ +.+++.. . ..++|.||..|+..|+|.
T Consensus 220 ~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~ 299 (426)
T PLN02813 220 SAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARALCGL 299 (426)
T ss_pred HHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCC
Confidence 446789999995211111223456778888888899999999886543221 1222222 1 379999999999999875
Q ss_pred cccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhhhccC-C
Q 017155 245 VLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARAKG-K 321 (376)
Q Consensus 245 ~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~~~g~-~ 321 (376)
.. ..+..++++.+.+... .+|+..|. +.++.++++.+++....... .|+|+||.|.|.+..-+. +|. +
T Consensus 300 ~~-----~~~~~~a~~~L~~~~~-~VVVT~G~~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l~---~G~~~ 370 (426)
T PLN02813 300 GS-----EESPESATRYLSHFCP-LVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGILYGLL---RGVSD 370 (426)
T ss_pred CC-----CCCHHHHHHHHHcCCC-EEEEEeCCCCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHHHHHHH---cCCCC
Confidence 31 1344555666654334 34444454 77777777766665332222 499999966555544455 676 5
Q ss_pred c
Q 017155 322 A 322 (376)
Q Consensus 322 ~ 322 (376)
+
T Consensus 371 l 371 (426)
T PLN02813 371 L 371 (426)
T ss_pred H
Confidence 4
No 61
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.67 E-value=8.7e-07 Score=84.02 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=88.9
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC--CCEEEeCCccc---ccccchhhh----cc-CC-CeeEcCCHHHH
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN--VPIVIDGDGLF---LVTNSIDLV----SG-YP-LAVLTPNVNEY 238 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~--~pvVLDpdgl~---ll~~~~~ll----~~-~~-~~vITPN~~E~ 238 (376)
+..+|+++-| -.++...++.+.+++++.++.+ ...|+||+.-. +--. .+++ +. .+ .++||||..|+
T Consensus 79 ~~~Y~~vLTG--Y~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~-eelipvYr~~i~~ladiiTPNqFE~ 155 (308)
T KOG2599|consen 79 LNKYDAVLTG--YLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVP-EELIPVYRDLIIPLADIITPNQFEA 155 (308)
T ss_pred ccccceeeee--ccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEecc-HHHHHHHHHhhcchhhhcCCcchhh
Confidence 3478999998 3346556677777777776654 45799999642 1111 1221 11 23 68999999999
Q ss_pred HHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-----c-eEEE----cCCeEEEEeeCCCCCCCCCchHHHHHH
Q 017155 239 KRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-----S-DLIS----DGEIAKSVSIYGSPRRCGGQGDILSGS 308 (376)
Q Consensus 239 ~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-----~-~vi~----~~~~~~~i~~~g~~~~t~GsGDvLaG~ 308 (376)
+-|+|..+. +++|..++.+.|.+++-..+|+.... + ++++ .+.+.+++..+-.+.--+||||.++++
T Consensus 156 EiLtg~~I~---t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~~~FtGTGDLfsaL 232 (308)
T KOG2599|consen 156 EILTGMEIR---TEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKIDGVFTGTGDLFSAL 232 (308)
T ss_pred hhhcCCeec---cHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecccceEEecccHHHHHH
Confidence 999998764 44688888999999874344443321 1 3333 123344343222233489999999999
Q ss_pred HHHHHh
Q 017155 309 VAVFLS 314 (376)
Q Consensus 309 Iaa~LA 314 (376)
+.+.+.
T Consensus 233 Lla~~~ 238 (308)
T KOG2599|consen 233 LLAWLH 238 (308)
T ss_pred HHHHHh
Confidence 988765
No 62
>PTZ00247 adenosine kinase; Provisional
Probab=98.64 E-value=5.8e-07 Score=89.01 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=85.6
Q ss_pred hhccCCEEEEcCC-CCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccccccc----chhhhccCCCeeEcCCHHHHHHHhc
Q 017155 169 WMERFDCLVVGPG-LGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTN----SIDLVSGYPLAVLTPNVNEYKRLVQ 243 (376)
Q Consensus 169 ~l~~~davvIGpG-l~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~----~~~ll~~~~~~vITPN~~E~~~L~g 243 (376)
.++++|++.+..- +..+ .+.+..+++.+++.++++++|+........ ..++++ .+++++||..|++.|+|
T Consensus 156 ~l~~~~~v~~~g~~~~~~---~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~--~~Dil~~N~~Ea~~l~g 230 (345)
T PTZ00247 156 AIKTAQLYYLEGFFLTVS---PNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLP--YVDILFGNEEEAKTFAK 230 (345)
T ss_pred HHhhCCEEEEEEEEeccc---HHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHh--hCCEEEeCHHHHHHHhh
Confidence 4678999999731 1112 245777788888899999999764211110 012332 27999999999999998
Q ss_pred ccccCCCCCCcHHHHHHHHHHh------hCCeEEEEcCC-ceEEEcCCeEEEEeeCCC----CCCCCCchHHHHHHHHHH
Q 017155 244 KVLNCEVNDRDAPELLQSLAKQ------IGGVTILQKGK-SDLISDGEIAKSVSIYGS----PRRCGGQGDILSGSVAVF 312 (376)
Q Consensus 244 ~~~~~~v~~~d~~~~a~~la~~------~~~~vVllKG~-~~vi~~~~~~~~i~~~g~----~~~t~GsGDvLaG~Iaa~ 312 (376)
... ..+.+..+.++.+.+. ....+|+..|. +.+++++++.+++..... ...|+|+||.|.|.+.+-
T Consensus 231 ~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~ 307 (345)
T PTZ00247 231 AMK---WDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQ 307 (345)
T ss_pred ccC---CCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHH
Confidence 421 1123455666666531 11234554555 677777776555543222 235999999655444444
Q ss_pred HhhhhccCCc
Q 017155 313 LSWARAKGKA 322 (376)
Q Consensus 313 LA~~~~g~~~ 322 (376)
+. +|+++
T Consensus 308 l~---~g~~~ 314 (345)
T PTZ00247 308 YA---NGKDI 314 (345)
T ss_pred HH---cCCCH
Confidence 45 67665
No 63
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=98.60 E-value=1.8e-06 Score=82.38 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=80.2
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhcccccCC
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCE 249 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~~~~ 249 (376)
++++|++.+++..+ +...++++.+++.++|+++|.+...... ..+++. ..++++||..|+..|++..
T Consensus 124 ~~~~~~v~i~~~~~------~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~~~--~~dil~~n~~e~~~l~~~~---- 190 (284)
T cd01945 124 LGGADAVLVDGRQP------EAALHLAQEARARGIPIPLDLDGGGLRV-LEELLP--LADHAICSENFLRPNTGSA---- 190 (284)
T ss_pred hCcCCEEEEcCCCH------HHHHHHHHHHHHcCCCeeEeccCCcccc-hHHHhc--cCCEEEeChhHHhhhcCCC----
Confidence 67899999986321 2355567777778888888877543221 112332 2689999999999997642
Q ss_pred CCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEc-CCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhhhccCCc
Q 017155 250 VNDRDAPELLQSLAKQIGGVTILQKGK-SDLISD-GEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 250 v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~-~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~~~g~~~ 322 (376)
+. +.++.+.+.....+|+..|+ +.++++ +++.+++....... .++|+||.|.+.+.+.+. +|.++
T Consensus 191 ----~~-~~~~~l~~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~---~g~~~ 258 (284)
T cd01945 191 ----DD-EALELLASLGIPFVAVTLGEAGCLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALA---EGMPL 258 (284)
T ss_pred ----HH-HHHHHHHhcCCcEEEEEECCCCeEEEcCCCCEEecCCCccccccCCCcHHHHHHHHHHHHH---cCCCH
Confidence 11 34444444322234444454 677776 55555554322222 499999965555555555 77765
No 64
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=98.58 E-value=1.4e-06 Score=83.22 Aligned_cols=131 Identities=15% Similarity=0.250 Sum_probs=77.6
Q ss_pred HhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhcc-C-CCeeEcCCHHHHHHHhccc
Q 017155 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-Y-PLAVLTPNVNEYKRLVQKV 245 (376)
Q Consensus 168 ~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~-~-~~~vITPN~~E~~~L~g~~ 245 (376)
+.+++++++.+++ +. . +...++++.+++. +++++||..... ....+.++. . .+++++||..|+..|+|.+
T Consensus 110 ~~~~~~~~v~~~~-~~--~---~~~~~~~~~~~~~-~~v~~D~~~~~~-~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~ 181 (277)
T cd01946 110 EHYKDSEFVFLGN-IA--P---ELQREVLEQVKDP-KLVVMDTMNFWI-SIKPEKLKKVLAKVDVVIINDGEARQLTGAA 181 (277)
T ss_pred HHhhcCCEEEECC-CC--H---HHHHHHHHHHHhC-CEEEEccHHHhh-hhhHHHHHHHhccCCEEeCCHHHHHHHhCCc
Confidence 4467899999973 43 2 2345556666555 789999843211 001111111 2 2799999999999998632
Q ss_pred ccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCC-C-CCCCchHHHHHHHHHHHh
Q 017155 246 LNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSP-R-RCGGQGDILSGSVAVFLS 314 (376)
Q Consensus 246 ~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~-~-~t~GsGDvLaG~Iaa~LA 314 (376)
+..+.++.+.+.....+|+..|. +.+++++++.+++...... . .++|+||+|++.+.+.+.
T Consensus 182 --------~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~ 245 (277)
T cd01946 182 --------NLVKAARLILAMGPKALIIKRGEYGALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLA 245 (277)
T ss_pred --------hHHHHHHHHHHcCCCEEEEecCCCcEEEEECCceEEcCCcccCccCCCCCchHHHHHHHHHHHH
Confidence 34556666766433234443444 5667666665555422222 2 489999966555555555
No 65
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=98.56 E-value=2.3e-06 Score=82.09 Aligned_cols=141 Identities=10% Similarity=0.043 Sum_probs=79.9
Q ss_pred hccCCEEEEcCCCC-CCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhcc-CC-CeeEcCCHHHHHHHhcccc
Q 017155 170 MERFDCLVVGPGLG-RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-YP-LAVLTPNVNEYKRLVQKVL 246 (376)
Q Consensus 170 l~~~davvIGpGl~-~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~-~~-~~vITPN~~E~~~L~g~~~ 246 (376)
+.++|++.++.... ......+.+.++++.++ .+.++++|+........ .+.+.. .+ .++++||..|+..|+|...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~~~~~-~~~~~~~l~~~d~~~~n~~E~~~l~g~~~ 200 (289)
T cd01944 123 VAPYDYVYLSGYTLASENASKVILLEWLEALP-AGTTLVFDPGPRISDIP-DTILQALMAKRPIWSCNREEAAIFAERGD 200 (289)
T ss_pred CCCCCEEEEeCccccCcchhHHHHHHHHHhcc-CCCEEEEcCcccccccC-HHHHHHHHhcCCEEccCHHHHHHHhCCCC
Confidence 46789999874322 12213445666666543 56899999974321111 111211 22 7899999999999998531
Q ss_pred cCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEc-CCeEEEEeeCCCCC-CCCCchHH-HHHHHHHHHhhhhccCCc
Q 017155 247 NCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISD-GEIAKSVSIYGSPR-RCGGQGDI-LSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 247 ~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~-~~~~~~i~~~g~~~-~t~GsGDv-LaG~Iaa~LA~~~~g~~~ 322 (376)
.+....++++.++....+|+..|. +.++.+ ++..+++.....+. .++|+||. .||+++++ . +|.++
T Consensus 201 ------~~~~~~~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~-~---~g~~~ 270 (289)
T cd01944 201 ------PAAEASALRIYAKTAAPVVVRLGSNGAWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGL-A---KGMSL 270 (289)
T ss_pred ------cchHHHHHHHHhccCCeEEEEECCCcEEEEecCCCeEEecCCCCCCccCCCchHHHHHHHHHHH-H---cCCCH
Confidence 112233555655432234555555 667766 34444443222222 49999995 55555554 4 67664
No 66
>PLN02323 probable fructokinase
Probab=98.55 E-value=3.6e-06 Score=82.63 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=77.8
Q ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc-cccc---chhhhcc-C-CCeeEcCCHHHHHHHh
Q 017155 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-LVTN---SIDLVSG-Y-PLAVLTPNVNEYKRLV 242 (376)
Q Consensus 169 ~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~-ll~~---~~~ll~~-~-~~~vITPN~~E~~~L~ 242 (376)
.++.++++.++.-...++.....+..+++.+++.+.++++||.... .... ..+.+.. + .+++++||..|+..|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~ 212 (330)
T PLN02323 133 LIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLT 212 (330)
T ss_pred HHccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHh
Confidence 4567887777632212222234456777778888999999996321 1100 0111111 1 2789999999999998
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchH-HHHHHHHHHHh
Q 017155 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGD-ILSGSVAVFLS 314 (376)
Q Consensus 243 g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGD-vLaG~Iaa~LA 314 (376)
|... . +..+.. ++.......+|+..|+ +.++++++..+++....... .++|+|| ..||++++++.
T Consensus 213 g~~~----~--~~~~~~-~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l~~ 280 (330)
T PLN02323 213 GGDD----P--DDDTVV-KLWHPNLKLLLVTEGEEGCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLAK 280 (330)
T ss_pred CCCC----c--cHHHHH-HHHhcCCCEEEEecCCCceEEEeCCCceEeCCccCCCCCCCCcHHHHHHHHHHHHHc
Confidence 7531 1 111222 3333321234444455 77777766555454222222 5999999 45666666653
No 67
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=98.55 E-value=2.2e-06 Score=82.89 Aligned_cols=141 Identities=12% Similarity=0.039 Sum_probs=85.7
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccccc-cc---chhhhcc-CC-CeeEcCCHHHHHHHhc
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLV-TN---SIDLVSG-YP-LAVLTPNVNEYKRLVQ 243 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll-~~---~~~ll~~-~~-~~vITPN~~E~~~L~g 243 (376)
+++.+++.++.-....+.....+.++++.+++.+.++++|+...... .. ..+.++. .+ .+++.||..|+..|+|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g 196 (304)
T PRK09434 117 FRQGEWLHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSG 196 (304)
T ss_pred hcCCCEEEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhC
Confidence 45788888874322223333455567777888899999999743211 00 0111111 22 7899999999999987
Q ss_pred ccccCCCCCCcHHHHHHHHHHhhCC-eEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHHHHHHHHHHHhhhhccC
Q 017155 244 KVLNCEVNDRDAPELLQSLAKQIGG-VTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLSWARAKG 320 (376)
Q Consensus 244 ~~~~~~v~~~d~~~~a~~la~~~~~-~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDvLaG~Iaa~LA~~~~g~ 320 (376)
.. +..+.++.+.++++. .+|+..|+ +.+++++++.+++.....+. .++|+||++.|.+.+.++ +|.
T Consensus 197 ~~--------~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~~~~l~---~g~ 265 (304)
T PRK09434 197 TS--------QLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGLLAGLS---QAG 265 (304)
T ss_pred CC--------CHHHHHHHHHhhcCCcEEEEEecCCceEEEeCCceeEeCCCCCCCCcCCCchHHHHHHHHHHHH---cCC
Confidence 42 345567777664332 44555565 67777776666564222222 499999966555555555 665
Q ss_pred C
Q 017155 321 K 321 (376)
Q Consensus 321 ~ 321 (376)
+
T Consensus 266 ~ 266 (304)
T PRK09434 266 L 266 (304)
T ss_pred C
Confidence 4
No 68
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=98.46 E-value=1.9e-06 Score=82.57 Aligned_cols=142 Identities=20% Similarity=0.216 Sum_probs=85.9
Q ss_pred HHhhccCCEEEEcC-CCCCCHHHHHHHHHHHHHhhcCC--CCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhc
Q 017155 167 DKWMERFDCLVVGP-GLGRDPYLLECVSEIMKHARQSN--VPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQ 243 (376)
Q Consensus 167 ~~~l~~~davvIGp-Gl~~~~~~~~~~~~il~~a~~~~--~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g 243 (376)
...+...+++.++. -+... ...+.+..+.+.+++.+ .+++.|+..........+++. .+++++||..|+..|++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l~~ 198 (301)
T PF00294_consen 122 EEAIDEADILHLSGVSLPEG-IPEDLLEALAKAAKKNGPFDPVFRDPSWDDLREDLKELLP--YADILKPNEEEAEALTG 198 (301)
T ss_dssp HHHHHTESEEEEESGHCSTT-SHHHHHHHHHHHHHHTTEEEEEEEGGGSHHHHHHHHHHHH--TSSEEEEEHHHHHHHHT
T ss_pred ccccccccceeecccccccc-cccceeeecccccccccccccccccccccccchhhhhhcc--ccchhcccccccccccc
Confidence 44567899999986 23222 22345666666665566 456666655321111112332 38999999999999998
Q ss_pred ccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEee-CCCC-CCCCCchH-HHHHHHHHHHh
Q 017155 244 KVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSI-YGSP-RRCGGQGD-ILSGSVAVFLS 314 (376)
Q Consensus 244 ~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~-~g~~-~~t~GsGD-vLaG~Iaa~LA 314 (376)
.... +.++..+.++++..+....+|+..|. +.+++++++.+++.+ .... ..++|+|| .+||++++++.
T Consensus 199 ~~~~---~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~ 270 (301)
T PF00294_consen 199 SKID---DPEDALAALRELQARGVKIVIVTLGEDGALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLS 270 (301)
T ss_dssp CSTS---SHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHT
T ss_pred cccc---chhhhhccccccchhhhhhhhccccccCcccccccccccccccccccccceeccchhhhHHHHHHHHc
Confidence 6421 12455666666665543356666665 777777777776664 2222 35999999 55666666553
No 69
>PLN02548 adenosine kinase
Probab=98.33 E-value=7.1e-06 Score=80.62 Aligned_cols=144 Identities=15% Similarity=0.224 Sum_probs=81.0
Q ss_pred hhccCCEEEEcCC-CCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccccccc-chhhhccCC-CeeEcCCHHHHHHHhccc
Q 017155 169 WMERFDCLVVGPG-LGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTN-SIDLVSGYP-LAVLTPNVNEYKRLVQKV 245 (376)
Q Consensus 169 ~l~~~davvIGpG-l~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~-~~~ll~~~~-~~vITPN~~E~~~L~g~~ 245 (376)
.++..|++.++.= +..++ +.+..+++.+++.+.++++|+..-..... ...+....+ .++++||..|+..|+|..
T Consensus 145 ~~~~~~~v~~~g~~~~~~~---~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~ 221 (332)
T PLN02548 145 LVEKAKFYYIAGFFLTVSP---ESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALPYVDFLFGNETEARTFAKVQ 221 (332)
T ss_pred HHhhCCEEEEEEEEccCCH---HHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHhhCCEEEecHHHHHHHhCcc
Confidence 4567899988620 11122 34666777777788888888753211111 011111122 689999999999999853
Q ss_pred ccCCCCCCcHHHHHHHHHHh---h--C-CeEEEEcCC-ceEEEcCCeEEEEeeCCC----CCCCCCchHH-HHHHHHHHH
Q 017155 246 LNCEVNDRDAPELLQSLAKQ---I--G-GVTILQKGK-SDLISDGEIAKSVSIYGS----PRRCGGQGDI-LSGSVAVFL 313 (376)
Q Consensus 246 ~~~~v~~~d~~~~a~~la~~---~--~-~~vVllKG~-~~vi~~~~~~~~i~~~g~----~~~t~GsGDv-LaG~Iaa~L 313 (376)
. . +..+..+.++++.+. . + ..+|+..|+ +.++++++..+++..... ...++|+||. .||+++++
T Consensus 222 ~-~--~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l- 297 (332)
T PLN02548 222 G-W--ETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQL- 297 (332)
T ss_pred C-C--CcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCccccCCCchHHHHHHHHHHH-
Confidence 2 1 112344444555432 1 1 234555565 667777666655532111 2259999995 55566555
Q ss_pred hhhhccCCc
Q 017155 314 SWARAKGKA 322 (376)
Q Consensus 314 A~~~~g~~~ 322 (376)
. +|+++
T Consensus 298 ~---~g~~l 303 (332)
T PLN02548 298 V---QGKDI 303 (332)
T ss_pred H---cCCCH
Confidence 4 67665
No 70
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=98.26 E-value=1.7e-05 Score=75.49 Aligned_cols=130 Identities=15% Similarity=0.101 Sum_probs=73.6
Q ss_pred HhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccC-CCeeEcCCHHHHHH---Hhc
Q 017155 168 KWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGY-PLAVLTPNVNEYKR---LVQ 243 (376)
Q Consensus 168 ~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~-~~~vITPN~~E~~~---L~g 243 (376)
..++.+|++.++.. . .+.++++.+++.++++++|+...........+.+-. ..++++||..|+.. +++
T Consensus 122 ~~~~~~~~~~~~~~----~----~~~~~~~~~~~~g~~v~~D~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~ 193 (279)
T cd01942 122 DPDGLADIVHLSSG----P----GLIELARELAAGGITVSFDPGQELPRLSGEELEEILERADILFVNDYEAELLKERTG 193 (279)
T ss_pred hhhcccCEEEeCCc----h----HHHHHHHHHHHcCCeEEEcchhhhhhccHHHHHHHHhhCCEEecCHHHHHHHHhhcC
Confidence 34578899998732 1 244555666677999999998643211111111112 37899999999954 443
Q ss_pred ccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeC-CCC-CCCCCchHHHHHHHHHHHhhhhccC
Q 017155 244 KVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIY-GSP-RRCGGQGDILSGSVAVFLSWARAKG 320 (376)
Q Consensus 244 ~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~-g~~-~~t~GsGDvLaG~Iaa~LA~~~~g~ 320 (376)
.. +.. . ..... .+|+..|. +.++.++++.+++... ... ..++|+||++.|.+.+.+. +|.
T Consensus 194 ~~--------~~~-~----~~~~~-~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~---~g~ 256 (279)
T cd01942 194 LS--------EAE-L----ASGVR-VVVVTLGPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLL---RGY 256 (279)
T ss_pred CC--------hHH-H----hcCCC-EEEEEECCCceEEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHH---cCC
Confidence 21 111 1 12223 34455555 6677776666655422 212 2499999966555555555 666
Q ss_pred Cc
Q 017155 321 KA 322 (376)
Q Consensus 321 ~~ 322 (376)
++
T Consensus 257 ~l 258 (279)
T cd01942 257 DL 258 (279)
T ss_pred CH
Confidence 54
No 71
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=98.25 E-value=3.4e-05 Score=72.92 Aligned_cols=128 Identities=17% Similarity=0.238 Sum_probs=77.6
Q ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhcc-CC-CeeEcCCHHHHHHHhcccc
Q 017155 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-YP-LAVLTPNVNEYKRLVQKVL 246 (376)
Q Consensus 169 ~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~-~~-~~vITPN~~E~~~L~g~~~ 246 (376)
.++++|++.++. ... .+.+.++++.+++.++++++|+...... +.+.. .+ .+++.+|..|..
T Consensus 109 ~~~~~~~v~~~~-~~~----~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~~~~~d~~~~~~~~~~------- 172 (264)
T cd01940 109 YLSQFDLVHTGI-YSH----EGHLEKALQALVGAGALISFDFSDRWDD----DYLQLVCPYVDFAFFSASDLS------- 172 (264)
T ss_pred HHhcCCEEEEcc-ccc----HHHHHHHHHHHHHcCCEEEEcCcccCCH----HHHHhhcccCCEEEechhhcC-------
Confidence 357899999983 432 2356777888888899999999864321 11111 22 578888866542
Q ss_pred cCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHH-HHHHHHHHHhhhhccCC
Q 017155 247 NCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDI-LSGSVAVFLSWARAKGK 321 (376)
Q Consensus 247 ~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDv-LaG~Iaa~LA~~~~g~~ 321 (376)
..+..+.++++.+.....+|+..|. +.++.++++.+.+....... .++|+||. .||++++++ +|++
T Consensus 173 -----~~~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~----~g~~ 241 (264)
T cd01940 173 -----DEEVKAKLKEAVSRGAKLVIVTRGEDGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLL----AGGT 241 (264)
T ss_pred -----cchHHHHHHHHHHcCCCEEEEEECCCCeEEEeCCeEEecCCcCCCCCCCCCchHHHHHHHHHHHH----hCCc
Confidence 1234455666665432244455555 67777766665554322222 49999994 566666655 5655
No 72
>PRK15074 inosine/guanosine kinase; Provisional
Probab=98.20 E-value=2.6e-05 Score=80.10 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=64.8
Q ss_pred hhccCCEEEEcCCCCC---CHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhh-cc-C-CCeeEcCCHHHHHHHh
Q 017155 169 WMERFDCLVVGPGLGR---DPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLV-SG-Y-PLAVLTPNVNEYKRLV 242 (376)
Q Consensus 169 ~l~~~davvIGpGl~~---~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll-~~-~-~~~vITPN~~E~~~L~ 242 (376)
.++.++++.++.-+.. ++...+.+.++++.+++.++++++|+.....+....+.+ .. . ..+||.||..|+..|+
T Consensus 183 ~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~NeeEa~~Lt 262 (434)
T PRK15074 183 VIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNEDEAEALT 262 (434)
T ss_pred HhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCHHHHHHHh
Confidence 4678999988632211 111124566778888889999999998654332222111 11 1 3799999999999998
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEc
Q 017155 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISD 282 (376)
Q Consensus 243 g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~ 282 (376)
|.. +..+.++.+.+... .+|+..|+ +.+++.
T Consensus 263 G~~--------d~eea~~~L~~~~~-~VVVTlG~~Ga~v~~ 294 (434)
T PRK15074 263 GES--------DPLLASDKALDWVD-LVLCTAGPIGLYMAG 294 (434)
T ss_pred CCC--------CHHHHHHHHHcCCC-EEEEEECCCCEEEEe
Confidence 742 23345555654333 45555565 677753
No 73
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=98.15 E-value=0.00024 Score=70.63 Aligned_cols=156 Identities=17% Similarity=0.061 Sum_probs=82.8
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhc-----CCCCEEEeCCcccc--cccc----hhhhccCCCeeEcCCHHHH
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQ-----SNVPIVIDGDGLFL--VTNS----IDLVSGYPLAVLTPNVNEY 238 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~-----~~~pvVLDpdgl~l--l~~~----~~ll~~~~~~vITPN~~E~ 238 (376)
+...+.+.+..-+ . .+....+++.++. ++..+++||+.... .... .+++. ..++++||..|+
T Consensus 120 ~~~~~~~~l~~ei--~---~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~--~iDil~~ne~Ea 192 (335)
T PLN02630 120 YEFGMAVGVAGEI--L---PETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLP--RIGFLKASSEEA 192 (335)
T ss_pred hcccceeeecCCC--c---HHHHHHHHHHhhhheeccCceEEecCCcccccccchhhHHHHHHHHH--hCCEEEecHHHH
Confidence 4456666663211 1 2345566666665 57788999986311 1100 12332 278999999999
Q ss_pred HHHhcccccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCceEEEcCCeEEEEeeCCCCC-CCCCchHH-HHHHHHHHHhhh
Q 017155 239 KRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQGDI-LSGSVAVFLSWA 316 (376)
Q Consensus 239 ~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~~vi~~~~~~~~i~~~g~~~-~t~GsGDv-LaG~Iaa~LA~~ 316 (376)
..| .. .+ + . +.+.++|-+..++.+++++++.+++....... .++|+||+ .||++++++
T Consensus 193 ~~l---~~---------~~-~---~-~~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~--- 252 (335)
T PLN02630 193 LFI---DV---------EE-V---R-QKCCVIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLV--- 252 (335)
T ss_pred hhc---CH---------HH-H---c-cCCEEEEEECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHHHHHHH---
Confidence 876 10 11 1 1 22334444444477777777666664322222 59999995 555555554
Q ss_pred hccCCcccCCCChhHHHHHHHHHHHHHHHHHHhhcCC-CCCcHHHHHHHH
Q 017155 317 RAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKK-RSTLTTDIIECL 365 (376)
Q Consensus 317 ~~g~~~~~~~~~~~~~aa~~a~~l~~~ag~~a~~~~~-~~~~a~dii~~l 365 (376)
+|.++ ..++..|. .+|.+..++.| ..+...++.+.+
T Consensus 253 -~g~~~--------~~a~~~A~----a~aa~~v~~~G~~~~~~~~l~~~~ 289 (335)
T PLN02630 253 -QGLAV--------PDAALLGN----YFGSLAVEQVGIPKFDLRQLQRVK 289 (335)
T ss_pred -cCCCH--------HHHHHHHH----HHHHHHhCcCCCCCCCHHHHHHHh
Confidence 56554 24333332 34444444444 344455554443
No 74
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=98.11 E-value=5.9e-05 Score=70.95 Aligned_cols=129 Identities=14% Similarity=0.156 Sum_probs=72.1
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc-ccccchhhhcc-CC-CeeEcCCHHHHHHHhcccc
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF-LVTNSIDLVSG-YP-LAVLTPNVNEYKRLVQKVL 246 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~-ll~~~~~ll~~-~~-~~vITPN~~E~~~L~g~~~ 246 (376)
+.++|++.+++ +... ....+.+. .+|+++|+.... ........+.. .+ .++++||..|+..+.
T Consensus 105 ~~~~~~~~~~~-~~~~-----~~~~~~~~----~~~v~~D~~~~~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~~---- 170 (254)
T cd01937 105 TITAEIVILGP-VPEE-----ISPSLFRK----FAFISLDAQGFLRRANQEKLIKCVILKLHDVLKLSRVEAEVIS---- 170 (254)
T ss_pred cCcccEEEECC-Ccch-----hcHHHHhh----hhheeEccccceeeccccchHHHhhcccCcEEEEcHHHHhhcC----
Confidence 56889999974 4321 22233322 268999997541 11111111111 23 799999999999831
Q ss_pred cCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCC-CCCCCchHHHHHHHHHHHhhhhccCCc
Q 017155 247 NCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSP-RRCGGQGDILSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 247 ~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~-~~t~GsGDvLaG~Iaa~LA~~~~g~~~ 322 (376)
+..+.++.+.+.....+|+..|. +.+++++++.+++...... ..++|+||+|++.+...+. +|.++
T Consensus 171 -------~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~---~g~~~ 238 (254)
T cd01937 171 -------TPTELARLIKETGVKEIIVTDGEEGGYIFDGNGKYTIPASKKDVVDPTGAGDVFLAAFLYSRL---SGKDI 238 (254)
T ss_pred -------CHHHHHHHHHHcCCCEEEEeeCCcceEEEECCccEEccccCceeccCCCchHHHHHHHHHHHH---cCCCH
Confidence 23445666655322234444444 6677776665555422222 2599999966655555555 66654
No 75
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=98.08 E-value=8.2e-05 Score=72.20 Aligned_cols=140 Identities=18% Similarity=0.146 Sum_probs=80.1
Q ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhcc-CC-CeeEcCCHHHHHHHhcccc
Q 017155 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-YP-LAVLTPNVNEYKRLVQKVL 246 (376)
Q Consensus 169 ~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~-~~-~~vITPN~~E~~~L~g~~~ 246 (376)
.+...+.+.++.-...... +.+.+.++.+++.+.++++|++....... .+.+.. .+ .++++||..|+..|+|..
T Consensus 126 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~a~~~g~~v~~d~~~~~~~~~-~~~~~~~l~~~d~~~~n~~E~~~l~g~~- 201 (311)
T COG0524 126 ELAGADVLHISGIQLEIPP--EALLAALELAKAAGVTVSFDLNPRPALWD-RELLEELLALADILFPNEEEAELLTGLE- 201 (311)
T ss_pred HHhhcCeeeEEEeecCCCh--HHHHHHHHHHHHcCCeEEEecCCCccccc-hhhHHHHHhhCCEEeCCHHHHHHHhCCC-
Confidence 3456777777643322211 45677778888899999999987654321 111212 22 799999999999998741
Q ss_pred cCCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEee-CCCC---CCCCCchHHHH-HHHHHHHhhhhccC
Q 017155 247 NCEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSI-YGSP---RRCGGQGDILS-GSVAVFLSWARAKG 320 (376)
Q Consensus 247 ~~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~-~g~~---~~t~GsGDvLa-G~Iaa~LA~~~~g~ 320 (376)
.+.....+.+....-..+|+..|+ +.++++++....+.. ...+ ..++|+||.+. |++++++ +|.
T Consensus 202 ------~~~~~~~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~----~g~ 271 (311)
T COG0524 202 ------EDAEAAAALLLAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLL----EGK 271 (311)
T ss_pred ------ccHHHHHHHHhhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHH----cCC
Confidence 122222333443322244555566 788887643211221 1112 24999999554 5555544 565
Q ss_pred Cc
Q 017155 321 KA 322 (376)
Q Consensus 321 ~~ 322 (376)
++
T Consensus 272 ~~ 273 (311)
T COG0524 272 SL 273 (311)
T ss_pred CH
Confidence 43
No 76
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=98.05 E-value=0.00013 Score=69.12 Aligned_cols=123 Identities=16% Similarity=0.209 Sum_probs=71.4
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhcccccCC
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCE 249 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~~~~ 249 (376)
++.+|.+.+++.. .. .++++.+++. ..+++|+..........++++ ..+++.||..|+..|++
T Consensus 119 ~~~~~~~~~~~~~-~~-------~~~~~~a~~~-~~~~~d~~~~~~~~~~~~~~~--~~d~~~~n~~e~~~l~~------ 181 (265)
T cd01947 119 LDEGDGVFITAAA-VD-------KEAIRKCRET-KLVILQVTPRVRVDELNQALI--PLDILIGSRLDPGELVV------ 181 (265)
T ss_pred hccCCEEEEeccc-cc-------HHHHHHHHHh-CCeEeccCccccchhHHHHhh--hCCEEEeCHHHHHHhhh------
Confidence 5678999998643 11 2334445544 368889875432211112222 27899999999998853
Q ss_pred CCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchH-HHHHHHHHHHhhhhccCCc
Q 017155 250 VNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGD-ILSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 250 v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGD-vLaG~Iaa~LA~~~~g~~~ 322 (376)
++.+.+.....+|+..|+ +.++++++..+.+.....+. .++|+|| ..||++++++ +|+++
T Consensus 182 ---------~~~~~~~~~~~viit~G~~Ga~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~----~g~~~ 244 (265)
T cd01947 182 ---------AEKIAGPFPRYLIVTEGELGAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLL----KGWSI 244 (265)
T ss_pred ---------HHHHHhccCCEEEEEeCCCCeEEEECCeeEECCCCCCCCCCCCCchHHHHHHHHHHHH----cCCCH
Confidence 223333321234444554 67777777655554322222 4999999 5666666654 56654
No 77
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=98.02 E-value=0.00019 Score=70.96 Aligned_cols=143 Identities=20% Similarity=0.198 Sum_probs=76.6
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhc------CCCCEEEeCCcccccc-cchhhhccCC-CeeEcCCHHHHHHH
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQ------SNVPIVIDGDGLFLVT-NSIDLVSGYP-LAVLTPNVNEYKRL 241 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~------~~~pvVLDpdgl~ll~-~~~~ll~~~~-~~vITPN~~E~~~L 241 (376)
+..++++.++.-. ....+.+.++++.+++ .+.++++||....... ....+.+-++ +++|+||..|+..|
T Consensus 118 ~~~a~~~hl~~~~---~~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l 194 (328)
T cd01943 118 LIRSSCIHLICSP---ERCASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAARL 194 (328)
T ss_pred ccCCCeEEEECCH---HHHHHHHHHHHHHHHhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHHHH
Confidence 4678888885311 1122566677777776 6778889987432110 0011111133 79999999999999
Q ss_pred hcccccCCCCCCcHH--HH---HHHH---HHhhCCeEEEEcCC-ceEEEc--CCeEEEEeeCCC---C-CCCCCchHH-H
Q 017155 242 VQKVLNCEVNDRDAP--EL---LQSL---AKQIGGVTILQKGK-SDLISD--GEIAKSVSIYGS---P-RRCGGQGDI-L 305 (376)
Q Consensus 242 ~g~~~~~~v~~~d~~--~~---a~~l---a~~~~~~vVllKG~-~~vi~~--~~~~~~i~~~g~---~-~~t~GsGDv-L 305 (376)
+|.... ++.... .. ...+ .......+|+..|. +.++++ ++..+++..... . ..++|+||. .
T Consensus 195 ~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~ 271 (328)
T cd01943 195 LGLPTS---EPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFL 271 (328)
T ss_pred hCCCCC---CccchhhhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHH
Confidence 986421 111111 11 1111 22221234444454 677766 344444442222 2 259999995 5
Q ss_pred HHHHHHHHhhhhccCCc
Q 017155 306 SGSVAVFLSWARAKGKA 322 (376)
Q Consensus 306 aG~Iaa~LA~~~~g~~~ 322 (376)
||++++++ +|.++
T Consensus 272 agfl~~l~----~g~~~ 284 (328)
T cd01943 272 GGFAAGLA----LTKSI 284 (328)
T ss_pred HHHHHHHH----cCCCH
Confidence 56666554 56654
No 78
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=97.67 E-value=0.0021 Score=67.28 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=79.9
Q ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcc-cccccc---hhhhcc-CC-CeeEcCCHHHHHHHh
Q 017155 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL-FLVTNS---IDLVSG-YP-LAVLTPNVNEYKRLV 242 (376)
Q Consensus 169 ~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl-~ll~~~---~~ll~~-~~-~~vITPN~~E~~~L~ 242 (376)
+++.++++.++.-...++...+.+..+++.+++.+++|++|+.-- .+.... .+.+.. .+ .+||+||..|+..|+
T Consensus 263 ~l~~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Lt 342 (496)
T PLN02543 263 VLKEARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLL 342 (496)
T ss_pred HhCCCceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHh
Confidence 467889999974222233344667778888888999999999732 121111 111211 22 799999999999999
Q ss_pred cccccC-----CCC---C------------CcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCC--eEEE-Ee---eCCCC
Q 017155 243 QKVLNC-----EVN---D------------RDAPELLQSLAKQIGGVTILQKGK-SDLISDGE--IAKS-VS---IYGSP 295 (376)
Q Consensus 243 g~~~~~-----~v~---~------------~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~--~~~~-i~---~~g~~ 295 (376)
|..... +.. + ....+.+..+.+.....+|+..|. +.++++++ ..+. .. ....+
T Consensus 343 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~~~ 422 (496)
T PLN02543 343 DEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTPEEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITPFT 422 (496)
T ss_pred CCCcccccccccchhhhhhhhhhhcccccccCCHHHHHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCCCCC
Confidence 853100 000 0 001133445554322234554555 55665432 1110 00 01112
Q ss_pred CCCCCchH-HHHHHHHHHHh
Q 017155 296 RRCGGQGD-ILSGSVAVFLS 314 (376)
Q Consensus 296 ~~t~GsGD-vLaG~Iaa~LA 314 (376)
.-|+|+|| ..||+|++++.
T Consensus 423 VDTTGAGDAF~AGfL~~Ll~ 442 (496)
T PLN02543 423 CDRTGSGDAVVAAIMRKLTT 442 (496)
T ss_pred cCCCchHHHHHHHHHHHHHh
Confidence 34999999 56677777764
No 79
>PLN02967 kinase
Probab=97.62 E-value=0.00069 Score=71.85 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=80.3
Q ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcc-cccccc---hhhhcc-CC-CeeEcCCHHHHHHHh
Q 017155 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL-FLVTNS---IDLVSG-YP-LAVLTPNVNEYKRLV 242 (376)
Q Consensus 169 ~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl-~ll~~~---~~ll~~-~~-~~vITPN~~E~~~L~ 242 (376)
.+..++++.++.-...++.....+..+++.+++.++++++|+.-- .+.... .+.+.. .+ .+||+||..|+..|+
T Consensus 332 ~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~Lt 411 (581)
T PLN02967 332 VLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLC 411 (581)
T ss_pred HhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHh
Confidence 467889999974211223334567778888888999999998632 221110 111111 22 789999999999999
Q ss_pred cccccC--CCCCCc-------HHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCe---EEEEeeCCCC---CCCCCchH-HH
Q 017155 243 QKVLNC--EVNDRD-------APELLQSLAKQIGGVTILQKGK-SDLISDGEI---AKSVSIYGSP---RRCGGQGD-IL 305 (376)
Q Consensus 243 g~~~~~--~v~~~d-------~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~---~~~i~~~g~~---~~t~GsGD-vL 305 (376)
|..... +..+.+ ..+.++.+.......+|+..|. +.++++++. +..+...... .-|+|+|| ..
T Consensus 412 G~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF~ 491 (581)
T PLN02967 412 GIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASGDGIV 491 (581)
T ss_pred CCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchhHHHH
Confidence 853100 000000 1233445544322245555665 666665432 1112111112 24999999 56
Q ss_pred HHHHHHHHh
Q 017155 306 SGSVAVFLS 314 (376)
Q Consensus 306 aG~Iaa~LA 314 (376)
||+|++++.
T Consensus 492 AGfL~~Ll~ 500 (581)
T PLN02967 492 AGLMRMLTV 500 (581)
T ss_pred HHHHHHHHh
Confidence 677777653
No 80
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=97.33 E-value=0.0043 Score=58.72 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=67.7
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhcc-CC-CeeEcCCHHHHHHHhccccc
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-YP-LAVLTPNVNEYKRLVQKVLN 247 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~-~~-~~vITPN~~E~~~L~g~~~~ 247 (376)
+..+|++.++. . . . ..++++.+++.++++++|+..... .+.+.. .+ .+++.+|..+
T Consensus 111 l~~~~~v~~~~-~--~-~----~~~~~~~~~~~~~~v~~D~~~~~~----~~~~~~~~~~~d~~~~~~~~---------- 168 (260)
T PRK09813 111 LAQYDIVHAAI-W--G-H----AEDAFPQLHAAGKLTAFDFSDKWD----SPLWQTLVPHLDYAFASAPQ---------- 168 (260)
T ss_pred HHhCCEEEEec-c--c-h----HHHHHHHHHHcCCeEEEEcCCCcc----HHHHHHhCCceeEEEecCCc----------
Confidence 56789999862 1 1 1 234455566789999999974321 011111 22 4555555321
Q ss_pred CCCCCCcHHHHHHHHHHhhCCeEEEEcCC-ceEEEcCCeEEEEeeCCCCC-CCCCchHH-HHHHHHHHHhhhhccCCc
Q 017155 248 CEVNDRDAPELLQSLAKQIGGVTILQKGK-SDLISDGEIAKSVSIYGSPR-RCGGQGDI-LSGSVAVFLSWARAKGKA 322 (376)
Q Consensus 248 ~~v~~~d~~~~a~~la~~~~~~vVllKG~-~~vi~~~~~~~~i~~~g~~~-~t~GsGDv-LaG~Iaa~LA~~~~g~~~ 322 (376)
...+..+.++.+.+.....+|+..|. +.++.++++.+.+....... -++|+||. .+|++++++ +|+++
T Consensus 169 ---~~~~~~~~~~~~~~~g~~~viit~G~~Ga~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~----~g~~~ 239 (260)
T PRK09813 169 ---EDEFLRLKMKAIVARGAGVVIVTLGENGSIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWL----AGMTL 239 (260)
T ss_pred ---chHHHHHHHHHHHHcCCCEEEEEECCCceEEEECCEEEecCCcccCCCCCCCchHHHHHHHHHHHH----cCCCH
Confidence 11233455566655432245555565 67777777665554222222 49999995 555666654 56654
No 81
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=97.11 E-value=0.0093 Score=57.28 Aligned_cols=129 Identities=9% Similarity=0.017 Sum_probs=66.3
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCC-------CCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHh
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSN-------VPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLV 242 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~-------~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~ 242 (376)
++++|++.++.-++ .. ..++++.+++.+ +++++|+.... ....++++ ..+++.+|..|+..+
T Consensus 125 ~~~~~~~~~~g~~~--~~----~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~--~~~~~~l~--~~di~~~n~~~~~~~- 193 (290)
T cd01939 125 LTQYGWIHFEGRNP--DE----TLRMMQHIEEHNNRRPEIRITISVEVEKPR--EELLELAA--YCDVVFVSKDWAQSR- 193 (290)
T ss_pred hccCCEEEEeccCH--HH----HHHHHHHHHHhcCcCCCcceEEEEEeccCc--hhhhhHHh--hCCEEEEEhHHHHhc-
Confidence 47899999974322 12 233444444433 56778875321 11012232 268999999887764
Q ss_pred cccccCCCCCCcHHHHHHHHHH-hhC-CeEEEEcCC-ceEEEcC-CeEEEEeeCC-C-CCCCCCchH-HHHHHHHHHHhh
Q 017155 243 QKVLNCEVNDRDAPELLQSLAK-QIG-GVTILQKGK-SDLISDG-EIAKSVSIYG-S-PRRCGGQGD-ILSGSVAVFLSW 315 (376)
Q Consensus 243 g~~~~~~v~~~d~~~~a~~la~-~~~-~~vVllKG~-~~vi~~~-~~~~~i~~~g-~-~~~t~GsGD-vLaG~Iaa~LA~ 315 (376)
+.. + ..+..+.+.. ..+ ..+|+..|. +.++.++ +..+.+.... . ...++|+|| ..||++++++
T Consensus 194 ~~~-----~---~~~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~-- 263 (290)
T cd01939 194 GYK-----S---PEECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALN-- 263 (290)
T ss_pred CcC-----C---HHHHHHhhhhhccCCcEEEEEcccCCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHH--
Confidence 531 1 1122222211 111 234555565 6666664 3444454222 1 235999999 4556666665
Q ss_pred hhccCC
Q 017155 316 ARAKGK 321 (376)
Q Consensus 316 ~~~g~~ 321 (376)
+|.+
T Consensus 264 --~g~~ 267 (290)
T cd01939 264 --KGPD 267 (290)
T ss_pred --cCCc
Confidence 5663
No 82
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.073 Score=52.46 Aligned_cols=145 Identities=15% Similarity=0.240 Sum_probs=80.9
Q ss_pred hhccCCEEEEcCCCC-CCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhcc-CC-CeeEcCCHHHHHHHhccc
Q 017155 169 WMERFDCLVVGPGLG-RDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG-YP-LAVLTPNVNEYKRLVQKV 245 (376)
Q Consensus 169 ~l~~~davvIGpGl~-~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~-~~-~~vITPN~~E~~~L~g~~ 245 (376)
++++..++.|+.=.. ..++ .+..+.+.+.+.+.+.++.-++........+.+.+ .+ .+||=.|..|++.+....
T Consensus 156 lveka~v~yv~Gffltv~p~---ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~ 232 (343)
T KOG2854|consen 156 LVEKAKVFYVAGFFLTVSPD---AIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARAH 232 (343)
T ss_pred hhhheeEEEEEEEEEEeChH---HHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhh
Confidence 456788888862111 2333 45556666777788888888876554433333333 45 799999999999998654
Q ss_pred ccCCCCCCcHHHHHHHHHH------hhCCeEEEEcCCce-EEEcCCeEEEEeeCCCC--C--CCCCchHHHHHHHHHHHh
Q 017155 246 LNCEVNDRDAPELLQSLAK------QIGGVTILQKGKSD-LISDGEIAKSVSIYGSP--R--RCGGQGDILSGSVAVFLS 314 (376)
Q Consensus 246 ~~~~v~~~d~~~~a~~la~------~~~~~vVllKG~~~-vi~~~~~~~~i~~~g~~--~--~t~GsGDvLaG~Iaa~LA 314 (376)
+++ ..|..+.+..... ..+-.+|+.-|... ++..++.++.......+ . -+.|+||+++|-..+.+.
T Consensus 233 -~~~--t~dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~ 309 (343)
T KOG2854|consen 233 -GWE--TKDVKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLV 309 (343)
T ss_pred -CCc--ccchHHHhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHH
Confidence 221 2333333333222 12224444445533 33344444433322222 2 399999977655555555
Q ss_pred hhhccCCc
Q 017155 315 WARAKGKA 322 (376)
Q Consensus 315 ~~~~g~~~ 322 (376)
||.++
T Consensus 310 ---qg~~l 314 (343)
T KOG2854|consen 310 ---QGKSL 314 (343)
T ss_pred ---cCCCH
Confidence 77664
No 83
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=94.05 E-value=0.24 Score=49.08 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=45.9
Q ss_pred CeeEcCCHHHHHHHhcccccCCCCCCcHHHHH---------HHHHHhhCCeEEEEcC-CceEEEcCCeE-EEEeeCCCCC
Q 017155 228 LAVLTPNVNEYKRLVQKVLNCEVNDRDAPELL---------QSLAKQIGGVTILQKG-KSDLISDGEIA-KSVSIYGSPR 296 (376)
Q Consensus 228 ~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a---------~~la~~~~~~vVllKG-~~~vi~~~~~~-~~i~~~g~~~ 296 (376)
.+++.||+.|++.+.+..-...+++ +..+.+ +-++.+.+ .+|+.-| ++.++++.+.. ..+...-.+.
T Consensus 184 ~~~~~~ne~e~~~i~~~adv~~~s~-~e~~fl~~~~~~~~~~L~~~~~k-~viVTlG~kG~~y~tk~~~~~~v~~~~V~~ 261 (330)
T KOG2855|consen 184 WDSLEENESEIASIWNMADVIKVSS-QELAFLTGIEDDKILKLWHMKLK-LVIVTLGEKGCRYYTKDFKGSHVPAFKVKA 261 (330)
T ss_pred cccccccHHHHHHHhhhhhcccccH-HHHHHhccCccchHHHHhccCCC-EEEEEeCCCceEEEecCCCCCCCCCccccc
Confidence 4678888888877776531111111 111111 12344454 4444444 46666643311 1222111122
Q ss_pred -CCCCchHHHHHHHHHHHhhhhcc
Q 017155 297 -RCGGQGDILSGSVAVFLSWARAK 319 (376)
Q Consensus 297 -~t~GsGDvLaG~Iaa~LA~~~~g 319 (376)
-|+|+||.|-|.++..|+ +|
T Consensus 262 VDtTGAGDsFvgal~~~L~---~~ 282 (330)
T KOG2855|consen 262 VDTTGAGDSFVGALAVQLV---RG 282 (330)
T ss_pred ccCCCchHHHHHHHHHHHh---hc
Confidence 399999988888888888 77
No 84
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=93.19 E-value=0.81 Score=47.16 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=41.8
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHH
Q 017155 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYK 239 (376)
Q Consensus 171 ~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~ 239 (376)
..+|.|.+-..+. ...+..+++ ++..+++|++.|.-......-.+.+.-...+.||||..|+-
T Consensus 424 ~~a~~I~~DsNiS-----~~~Ma~il~-ak~~k~~V~fEPTd~~k~~K~fk~l~v~~i~~i~PN~~Ell 486 (614)
T KOG3009|consen 424 LSADFILLDSNIS-----VPVMARILE-AKKHKKQVWFEPTDIDKVKKVFKTLLVGAITAISPNANELL 486 (614)
T ss_pred hcCCEEEEcCCCC-----HHHHHHHHH-hhhccCceEecCCCchhhhhhhhhcceeeEEeeCCCHHHHH
Confidence 3789999864432 346788887 77889999999975543222112221123689999999983
No 85
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=75.11 E-value=23 Score=31.86 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=50.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhc-ccCe-eEEecccCCcccccccCCceeeecccccccccCCCchhhhhhhhhhhHH
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKI-GADL-SHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILA 164 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~-Gagl-vt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (376)
++.+|.|-..|.+|-.-|+..-.+. ..|+ +++++..+ .+ -+++.++
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~e-------------------------------l~-~~~~~~~ 49 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAE-------------------------------LE-RDPEALE 49 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHH-------------------------------hh-cChHHHH
Confidence 6788889888888887777665555 3333 12221111 00 0234577
Q ss_pred HHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHH
Q 017155 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKH 198 (376)
Q Consensus 165 ~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~ 198 (376)
++.+.+..+|+++.+ |...++..+.+...++.
T Consensus 50 ~~~~aia~ADii~~s--mlF~ed~v~~l~~~L~~ 81 (164)
T PF11965_consen 50 ECEAAIARADIIFGS--MLFIEDHVRPLLPALEA 81 (164)
T ss_pred HHHHHHHhCCEEEee--hhhhHHHHHHHHHHHHH
Confidence 888888999999998 56777777777776654
No 86
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=74.47 E-value=2.3 Score=35.10 Aligned_cols=43 Identities=23% Similarity=0.606 Sum_probs=25.7
Q ss_pred HHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCE-EEeCCcc
Q 017155 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPI-VIDGDGL 213 (376)
Q Consensus 165 ~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pv-VLDpdgl 213 (376)
++.+.+.++|++++||-+ ... +.++-+.+.+.++|| |||+..-
T Consensus 41 e~~~~~~~~DvvLlGPQv---~y~---~~~~~~~~~~~giPV~vI~~~dY 84 (102)
T COG1440 41 ELSEYIDNADVVLLGPQV---RYM---LKQLKEAAEEKGIPVEVIDMLDY 84 (102)
T ss_pred HHHHhhhcCCEEEEChHH---HHH---HHHHHHHhcccCCCeEEeCHHHc
Confidence 445556789999999732 222 223333445577886 6777543
No 87
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=72.37 E-value=13 Score=35.24 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=46.8
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhh-cCCCCEEEeCCcccccccch------hhhccCCCeeEcCCHHHHHHHhcc
Q 017155 172 RFDCLVVGPGLGRDPYLLECVSEIMKHAR-QSNVPIVIDGDGLFLVTNSI------DLVSGYPLAVLTPNVNEYKRLVQK 244 (376)
Q Consensus 172 ~~davvIGpGl~~~~~~~~~~~~il~~a~-~~~~pvVLDpdgl~ll~~~~------~ll~~~~~~vITPN~~E~~~L~g~ 244 (376)
..|+|.||...+-.++ .+.++++..+ +.++|+||=|.....++... .+++...+..|+.++.|...+++.
T Consensus 41 GTDaImIGGS~gvt~~---~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~svLNS~n~~~i~gaq~~~a~~~~~ 117 (240)
T COG1646 41 GTDAIMIGGSDGVTEE---NVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSVLNSDNPYWIVGAQVEGAKLVGK 117 (240)
T ss_pred CCCEEEECCcccccHH---HHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEEecCCCcccccchhhhhhHHHHh
Confidence 5899999966655433 3444455555 68999999998775544321 234444577888888888877764
No 88
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.10 E-value=7 Score=40.34 Aligned_cols=102 Identities=18% Similarity=0.331 Sum_probs=61.2
Q ss_pred hHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCC-CEEEeCCcccccccchhhhccCC--CeeEcCCHHHH
Q 017155 162 ILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNV-PIVIDGDGLFLVTNSIDLVSGYP--LAVLTPNVNEY 238 (376)
Q Consensus 162 ~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~-pvVLDpdgl~ll~~~~~ll~~~~--~~vITPN~~E~ 238 (376)
.++++..+.++.++-+.+.+-..+ +.++.++.++.+++.+. -+|+|..|--.+.. ++..... ..++.||.-
T Consensus 143 A~eQL~~La~q~~v~~f~~~~~~~--Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide--~Lm~El~~Ik~~~~P~E~-- 216 (451)
T COG0541 143 AIEQLKQLAEQVGVPFFGSGTEKD--PVEIAKAALEKAKEEGYDVVIVDTAGRLHIDE--ELMDELKEIKEVINPDET-- 216 (451)
T ss_pred HHHHHHHHHHHcCCceecCCCCCC--HHHHHHHHHHHHHHcCCCEEEEeCCCcccccH--HHHHHHHHHHhhcCCCeE--
Confidence 456777777888888888754444 46788888888877532 38999998654432 2221110 235666532
Q ss_pred HHHhcccccCCCCCCcHHHHHHHHHHhhCC-eEEEEc
Q 017155 239 KRLVQKVLNCEVNDRDAPELLQSLAKQIGG-VTILQK 274 (376)
Q Consensus 239 ~~L~g~~~~~~v~~~d~~~~a~~la~~~~~-~vVllK 274 (376)
|+=.+. ..-++....|+.|.+..+- .+|+.|
T Consensus 217 --llVvDa---m~GQdA~~~A~aF~e~l~itGvIlTK 248 (451)
T COG0541 217 --LLVVDA---MIGQDAVNTAKAFNEALGITGVILTK 248 (451)
T ss_pred --EEEEec---ccchHHHHHHHHHhhhcCCceEEEEc
Confidence 221110 0125788899999987542 245544
No 89
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=69.82 E-value=28 Score=31.56 Aligned_cols=102 Identities=21% Similarity=0.158 Sum_probs=51.1
Q ss_pred CCeEEEEecC-CCCCCHHHHHHHHHHhcccCeeEEecccCCc--ccccccCCceeeecccccccccCCCchhhhhhhhhh
Q 017155 85 AGKIAVIGGC-REYTGAPYFAAISALKIGADLSHVFCTKDAA--PVIKSYSPELIVHPILEESYNISGLEDEERRCISSK 161 (376)
Q Consensus 85 ~G~vliIgGs-~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~--~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (376)
+|..++-||. .+..|| ++.++... -|.+.-+.|+... .....+..+.+..+..
T Consensus 31 ~g~~lV~GGg~~GlM~a---~a~ga~~~-gG~viGi~p~~l~~~~~~~~~~~~~i~~~~~-------------------- 86 (178)
T TIGR00730 31 QGWGLVYGGGRVGLMGA---IADAAMEN-GGTAVGVNPSGLFSGEVVHQNLTELIEVNGM-------------------- 86 (178)
T ss_pred CCCEEEECCChHhHHHH---HHHHHHhc-CCeEEEecchhhhhhhccCCCCCceEEECCH--------------------
Confidence 3678898883 444444 44455544 4677777776532 2223333444332210
Q ss_pred hHHHHHHhhccCCEEEEc-CCCCCCHHHHHHHHHHHHHhhcCCCCE-EEeCCcc
Q 017155 162 ILAEVDKWMERFDCLVVG-PGLGRDPYLLECVSEIMKHARQSNVPI-VIDGDGL 213 (376)
Q Consensus 162 ~~~~l~~~l~~~davvIG-pGl~~~~~~~~~~~~il~~a~~~~~pv-VLDpdgl 213 (376)
.+....+++.+|++++= .|+|+-+|..+.+.. .+....++|+ +++.++.
T Consensus 87 -~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~--~qlg~~~kPiil~n~~g~ 137 (178)
T TIGR00730 87 -HERKAMMAELADAFIAMPGGFGTLEELFEVLTW--AQLGIHQKPIILFNVNGH 137 (178)
T ss_pred -HHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHH--HHcCCCCCCEEEECCcch
Confidence 12223345677877765 456665554443321 1222345554 5666654
No 90
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=68.75 E-value=12 Score=35.87 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=41.7
Q ss_pred hhhHHHHHHhhcc-CCEEEEc-CCCCC-------CHHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 160 SKILAEVDKWMER-FDCLVVG-PGLGR-------DPYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 160 ~~~~~~l~~~l~~-~davvIG-pGl~~-------~~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
.++++.+.+++.. ..++.|| .||.. -+.+.++++.-++.|++.+.|+||=...
T Consensus 73 ~~~~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~ 134 (256)
T COG0084 73 EEDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRD 134 (256)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence 3556788888874 8999999 88862 2236788888899999999999997764
No 91
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=66.27 E-value=16 Score=34.52 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=39.8
Q ss_pred hHHHHHHhhccCCEEEEc-CCCCC-CHHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 162 ILAEVDKWMERFDCLVVG-PGLGR-DPYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 162 ~~~~l~~~l~~~davvIG-pGl~~-~~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
.++++.+++.+-|++.|| .|+-. .++-.+.+++-++.|++.++|+|+-.--
T Consensus 84 ~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr 136 (254)
T COG1099 84 VLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPR 136 (254)
T ss_pred HHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 467788888889999999 77753 2334677888888999999999998753
No 92
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=64.51 E-value=49 Score=34.29 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=65.1
Q ss_pred CCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcc----c---ccccCCceeeecccccccccCCCc
Q 017155 79 SKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAP----V---IKSYSPELIVHPILEESYNISGLE 151 (376)
Q Consensus 79 ~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~----~---i~~~~pe~~~~~~~~~~~~~~~~~ 151 (376)
...|-..|+ |+|+|.-+.....+.-+.+...+|+..+.+-+.+.... . +....|++.+.. . +
T Consensus 204 ~~~~d~~g~-l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~---G--~----- 272 (450)
T TIGR01302 204 HASKDENGR-LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA---G--N----- 272 (450)
T ss_pred cceEeCCCC-EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE---E--e-----
Confidence 344445565 67777766666666667777888999999888664322 1 233335532211 0 0
Q ss_pred hhhhhhhhhhhHHHHHHhhccCCEEEEcCCCC-----C-----CHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 152 DEERRCISSKILAEVDKWMERFDCLVVGPGLG-----R-----DPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~-----~-----~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
-.+.++...+.+ ..+|+|.+|.|-+ + ...+...+.++.+.+++.++|+|-|.-
T Consensus 273 -----v~t~~~a~~l~~--aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGG 335 (450)
T TIGR01302 273 -----VATAEQAKALID--AGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGG 335 (450)
T ss_pred -----CCCHHHHHHHHH--hCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCC
Confidence 113333344443 2689999874322 1 112345566666656667888887764
No 93
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=63.57 E-value=7.6 Score=37.35 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=33.9
Q ss_pred HHHHHhhccCCEEEEcCCCCCC--HHHHHHHHHHHHHhhcCCCCEEEeCCcccccc
Q 017155 164 AEVDKWMERFDCLVVGPGLGRD--PYLLECVSEIMKHARQSNVPIVIDGDGLFLVT 217 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~--~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~ 217 (376)
+.+....+++|.|++..|||+. +-+.+.+.+ ..+.|+|+|+..+..+.
T Consensus 52 ~~l~~a~~r~D~vI~tGGLGPT~DDiT~e~vAk------a~g~~lv~~~~al~~i~ 101 (255)
T COG1058 52 EALREASERADVVITTGGLGPTHDDLTAEAVAK------ALGRPLVLDEEALAMIE 101 (255)
T ss_pred HHHHHHHhCCCEEEECCCcCCCccHhHHHHHHH------HhCCCcccCHHHHHHHH
Confidence 4556666789999999999974 334444433 36889999998775443
No 94
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=60.24 E-value=39 Score=31.44 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=27.5
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhc-CCCCEEEeCCcccccc
Q 017155 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQ-SNVPIVIDGDGLFLVT 217 (376)
Q Consensus 172 ~~davvIGpGl~~~~~~~~~~~~il~~a~~-~~~pvVLDpdgl~ll~ 217 (376)
..|++.||...+-+.+. +.++++.+++ .++|+|+=|.....+.
T Consensus 24 gtDaI~VGGS~gvt~~~---~~~~v~~ik~~~~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 24 GTDAIMVGGSLGIVESN---LDQTVKKIKKITNLPVILFPGNVNGLS 67 (205)
T ss_pred CCCEEEEcCcCCCCHHH---HHHHHHHHHhhcCCCEEEECCCccccC
Confidence 36999999655444432 3444444455 6899999887665443
No 95
>PRK10812 putative DNAse; Provisional
Probab=58.18 E-value=25 Score=33.72 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=38.3
Q ss_pred HHHHHHhhccCCEEEEc-CCCCCC------HHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 163 LAEVDKWMERFDCLVVG-PGLGRD------PYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 163 ~~~l~~~l~~~davvIG-pGl~~~------~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
++++.++++...++.|| .|+... +...++++..++.+++.+.|+++=...
T Consensus 77 ~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~ 133 (265)
T PRK10812 77 VEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRD 133 (265)
T ss_pred HHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeC
Confidence 45666667777899998 777632 356788888889999999999987653
No 96
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=58.06 E-value=23 Score=33.45 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=40.0
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccch------hhhccCCCeeEcCCHHHHHHHh
Q 017155 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI------DLVSGYPLAVLTPNVNEYKRLV 242 (376)
Q Consensus 172 ~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~------~ll~~~~~~vITPN~~E~~~L~ 242 (376)
..|++.||...+-..+ -+.++++..++..+|+||=|.....+.... .+++...+..|+....|+..++
T Consensus 27 gtdai~vGGS~~vt~~---~~~~~v~~ik~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~ 100 (223)
T TIGR01768 27 GTDAILIGGSQGVTYE---KTDTLIEALRRYGLPIILFPSNPTNVSRDADALFFPSVLNSDDPYWIIGAQIEAAPKF 100 (223)
T ss_pred CCCEEEEcCCCcccHH---HHHHHHHHHhccCCCEEEeCCCccccCcCCCEEEEEEeecCCCchHHHhHHHHHHHHH
Confidence 5799999965544433 344555555667899999987655433221 2233333555555555555554
No 97
>PRK10425 DNase TatD; Provisional
Probab=57.97 E-value=24 Score=33.78 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=38.1
Q ss_pred HHHHHHhhccCCEEEEc-CCCCCC------HHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 163 LAEVDKWMERFDCLVVG-PGLGRD------PYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 163 ~~~l~~~l~~~davvIG-pGl~~~------~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
++.+.++++...++.|| .||... +.+.+++...++.|++.+.|+||=...
T Consensus 74 ~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~ 130 (258)
T PRK10425 74 EEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRD 130 (258)
T ss_pred HHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 45666667667889999 888632 345688888899999999999987763
No 98
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=56.54 E-value=32 Score=32.38 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=42.1
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccch------hhhccCCCeeEcCCHHHHHHHhcc
Q 017155 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI------DLVSGYPLAVLTPNVNEYKRLVQK 244 (376)
Q Consensus 171 ~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~------~ll~~~~~~vITPN~~E~~~L~g~ 244 (376)
...|++.||...+-+ ++.+-+..+++...+ .+|+|+=|.....+.... .+++...+..|+....|...+++.
T Consensus 24 ~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~-~~Pvilfp~~~~~i~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~ 101 (219)
T cd02812 24 SGTDAIMVGGSDGVS-STLDNVVRLIKRIRR-PVPVILFPSNPEAVSPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGK 101 (219)
T ss_pred cCCCEEEECCccchh-hhHHHHHHHHHHhcC-CCCEEEeCCCccccCcCCCEEEEEeeecCCCchHHHHHHHHHHHHhcc
Confidence 357999999654433 344445455555443 599999998765443221 223333456666666666666543
No 99
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=54.20 E-value=52 Score=30.59 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=51.0
Q ss_pred chhHhhhhHHhHhhhCCCCCccCcccccccccccCccccCChhhHHHhhCCCCCCCCCCCCCCeEEEEecCCCCCCHHHH
Q 017155 24 SSAVFRRQQFLIRSLGGYSDHIEPRRMQDIRSMSGTTFEADAENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYF 103 (376)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~r~~~~hKg~~G~vliIgGs~~~~GA~il 103 (376)
++..-+.-+...+.+|.+... =|++--..+ .+.+.+.+|.+. .-+|++++|.-.-+|=++-
T Consensus 7 ~~~~~~~~~~~~~~lg~~~~~----------LMEnAG~aV--a~~i~~~~~~~~-------~~~v~vlcG~GnNGGDG~V 67 (203)
T COG0062 7 AAEMMAIDDLNAEALGLPLDI----------LMENAGLAV--ARAILREYPLGR-------ARRVLVLCGPGNNGGDGLV 67 (203)
T ss_pred HHHHHHHHHHHHHHcCCCHHH----------HHHHHHHHH--HHHHHHHcCccc-------CCEEEEEECCCCccHHHHH
Confidence 355666777788888777654 233332211 223455566543 5789999999999999999
Q ss_pred HHHHHHhcccCee
Q 017155 104 AAISALKIGADLS 116 (376)
Q Consensus 104 Aa~aAlr~Gaglv 116 (376)
+|+...+.|..+.
T Consensus 68 aAR~L~~~G~~V~ 80 (203)
T COG0062 68 AARHLKAAGYAVT 80 (203)
T ss_pred HHHHHHhCCCceE
Confidence 9999999995533
No 100
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=54.18 E-value=1e+02 Score=32.55 Aligned_cols=112 Identities=23% Similarity=0.254 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcc-------cccccCCc--eeeecccccccccCCCc
Q 017155 81 HKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAP-------VIKSYSPE--LIVHPILEESYNISGLE 151 (376)
Q Consensus 81 hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~-------~i~~~~pe--~~~~~~~~~~~~~~~~~ 151 (376)
.|-..|++++ |..-+...-..--+.+...+|++++.+=+++.... .++...|+ +|...+.
T Consensus 230 ~~d~~~~l~v-gaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~---------- 298 (505)
T PLN02274 230 SVGKDGKLLV-GAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVV---------- 298 (505)
T ss_pred ccCCCCCEEE-EEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCC----------
Confidence 4456677555 55555556667777788888999999988875422 23455564 3332221
Q ss_pred hhhhhhhhhhhHHHHHHhhccCCEEEEcCCCC----CCH------HHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 152 DEERRCISSKILAEVDKWMERFDCLVVGPGLG----RDP------YLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~----~~~------~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
+.++-..+.+ ..+|+|++|.|-+ +.. .....+..+-+.+++.++|||.|.--
T Consensus 299 -------t~e~a~~a~~--aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI 360 (505)
T PLN02274 299 -------TMYQAQNLIQ--AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGI 360 (505)
T ss_pred -------CHHHHHHHHH--cCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCC
Confidence 2222233333 3789999983322 100 01112222333334467899988753
No 101
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=53.84 E-value=65 Score=26.66 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=56.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcc-cccccCC------ceeeecccccccccCCCchhhhhhhh
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAP-VIKSYSP------ELIVHPILEESYNISGLEDEERRCIS 159 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~-~i~~~~p------e~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (376)
||.|||.+ +|.|..++--+.. +-...++.++......+ .+....| ++.+..
T Consensus 1 rV~IvGAt-G~vG~~l~~lL~~-hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------------- 58 (121)
T PF01118_consen 1 RVAIVGAT-GYVGRELLRLLAE-HPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED-------------------- 58 (121)
T ss_dssp EEEEESTT-SHHHHHHHHHHHH-TSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--------------------
T ss_pred CEEEECCC-CHHHHHHHHHHhc-CCCccEEEeeeeccccCCeeehhccccccccceeEee--------------------
Confidence 57788765 8999999887777 77888888888877332 3433333 111111
Q ss_pred hhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccccc
Q 017155 160 SKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLV 216 (376)
Q Consensus 160 ~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll 216 (376)
.+.+. +.+.|++.... .+....++...+ .+.++ .|+|..+-.-+
T Consensus 59 -~~~~~----~~~~Dvvf~a~---~~~~~~~~~~~~----~~~g~-~ViD~s~~~R~ 102 (121)
T PF01118_consen 59 -ADPEE----LSDVDVVFLAL---PHGASKELAPKL----LKAGI-KVIDLSGDFRL 102 (121)
T ss_dssp -TSGHH----HTTESEEEE-S---CHHHHHHHHHHH----HHTTS-EEEESSSTTTT
T ss_pred -cchhH----hhcCCEEEecC---chhHHHHHHHHH----hhCCc-EEEeCCHHHhC
Confidence 00111 36889999972 233333333333 34565 89999876533
No 102
>PRK05826 pyruvate kinase; Provisional
Probab=53.03 E-value=29 Score=36.27 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=39.4
Q ss_pred hhHHHHHHhhccCCEEEEcCC-----CCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcc
Q 017155 161 KILAEVDKWMERFDCLVVGPG-----LGRDPYLLECVSEIMKHARQSNVPIVIDGDGL 213 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIGpG-----l~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl 213 (376)
+.++.++++++-.|.+.||+| ++ .++...+.+++++.+++.++|+++-.-.+
T Consensus 226 eav~nldeI~~~~DgImIgrgDLg~elg-~~~v~~~qk~Ii~~c~~~gKpvi~ATqmL 282 (465)
T PRK05826 226 EAVDNIDEIIEASDGIMVARGDLGVEIP-DEEVPGLQKKIIRKAREAGKPVITATQML 282 (465)
T ss_pred HHHHhHHHHHHHcCEEEECcchhhhhcC-cHhHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 446677777777999999966 22 34566778889999999999999875433
No 103
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.51 E-value=85 Score=32.10 Aligned_cols=38 Identities=21% Similarity=0.483 Sum_probs=24.9
Q ss_pred HHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 167 DKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 167 ~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
...++++|.|+++||++.+... ++.+++.++|++=+..
T Consensus 63 ~~~~~~~d~vv~s~gi~~~~~~-------~~~a~~~~i~v~~~~~ 100 (459)
T PRK02705 63 QPWLDQPDLVVVSPGIPWDHPT-------LVELRERGIEVIGEIE 100 (459)
T ss_pred hHHhhcCCEEEECCCCCCCCHH-------HHHHHHcCCcEEEhHH
Confidence 3445679999999999876431 2334456777765554
No 104
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=52.06 E-value=31 Score=36.27 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=37.7
Q ss_pred hhHHHHHHhhccCCEEEEcCC-----CCCCHHHHHHHHHHHHHhhcCCCCEEEeC
Q 017155 161 KILAEVDKWMERFDCLVVGPG-----LGRDPYLLECVSEIMKHARQSNVPIVIDG 210 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIGpG-----l~~~~~~~~~~~~il~~a~~~~~pvVLDp 210 (376)
+.++.++++++-.|.+.||+| ++ .++...+.+++++.+++.++|+++=.
T Consensus 226 ~av~nldeI~~~~DgImIargDLg~e~g-~~~v~~~qk~ii~~~~~~gkpvi~AT 279 (480)
T cd00288 226 EGVNNFDEILEASDGIMVARGDLGVEIP-AEEVFLAQKMLIAKCNLAGKPVITAT 279 (480)
T ss_pred HHHHhHHHHHHhcCEEEECcchhhhhcC-hHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 446677777777999999965 33 35666788889999999999999843
No 105
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=50.80 E-value=51 Score=31.24 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=40.9
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccch------hhhccCCCeeEcCCHHHHHHHh
Q 017155 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSI------DLVSGYPLAVLTPNVNEYKRLV 242 (376)
Q Consensus 171 ~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~------~ll~~~~~~vITPN~~E~~~L~ 242 (376)
...|++.||...+-..+ -+.++++..++..+|+||=|.....+.... .+++...+..|+.+..|+..++
T Consensus 31 ~gtdai~vGGS~~vt~~---~~~~~v~~ik~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~ 105 (232)
T PRK04169 31 SGTDAIIVGGSDGVTEE---NVDELVKAIKEYDLPVILFPGNIEGISPGADAYLFPSVLNSRNPYWIIGAHVEAAPII 105 (232)
T ss_pred cCCCEEEEcCCCccchH---HHHHHHHHHhcCCCCEEEeCCCccccCcCCCEEEEEEEecCCCcchHhhHHHHHHHHH
Confidence 46799999965543332 345555556668899999988765444321 2233333555555555555544
No 106
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=49.98 E-value=21 Score=29.24 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=25.0
Q ss_pred HHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCE-EEeCCc
Q 017155 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPI-VIDGDG 212 (376)
Q Consensus 165 ~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pv-VLDpdg 212 (376)
++.+..+++|++++|| +-.. .+.++-+.+...++|+ ++|+..
T Consensus 40 e~~~~~~~~Dvill~P---Qv~~---~~~~i~~~~~~~~ipv~~I~~~~ 82 (99)
T cd05565 40 SHYDMIPDYDLVILAP---QMAS---YYDELKKDTDRLGIKLVTTTGKQ 82 (99)
T ss_pred HHHHhccCCCEEEEcC---hHHH---HHHHHHHHhhhcCCCEEEeCHHH
Confidence 4555567899999987 3222 2333334455567886 566553
No 107
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=48.56 E-value=1.6e+02 Score=29.40 Aligned_cols=100 Identities=10% Similarity=0.212 Sum_probs=57.6
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCc--------------------------ccccccCCceeee
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA--------------------------PVIKSYSPELIVH 138 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~--------------------------~~i~~~~pe~~~~ 138 (376)
.-+|+|||. +|-|-..+..-.++|.|-++++=...+. ..+....|++-+.
T Consensus 24 ~~~VlIiG~----GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 24 EKHVLIVGA----GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred CCcEEEECC----CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 357888865 5666667777788899988877554321 0112234554443
Q ss_pred cccccccccCCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 139 PILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
.+.. .++. +.+.++++++|.|+.+. .+.++...+.++ +.+.++|+|.=..
T Consensus 100 ~~~~--------------~~~~---~~~~~~~~~~DlVid~~---D~~~~r~~in~~---~~~~~ip~i~~~~ 149 (338)
T PRK12475 100 PVVT--------------DVTV---EELEELVKEVDLIIDAT---DNFDTRLLINDL---SQKYNIPWIYGGC 149 (338)
T ss_pred EEec--------------cCCH---HHHHHHhcCCCEEEEcC---CCHHHHHHHHHH---HHHcCCCEEEEEe
Confidence 3211 1122 23445577899999974 344444344443 4557899886543
No 108
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.85 E-value=1.1e+02 Score=32.23 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=63.6
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcc----c---ccccCCc-eeeecccccccccC
Q 017155 77 DPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAP----V---IKSYSPE-LIVHPILEESYNIS 148 (376)
Q Consensus 77 ~~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~----~---i~~~~pe-~~~~~~~~~~~~~~ 148 (376)
.|++-|...|+.+|.++-.. .. .+--+.+...+|++.+.+-+++.... . +....|. +.+.. . +
T Consensus 221 ~P~a~~d~~grL~V~~av~~-~~-~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~a---G--n-- 291 (502)
T PRK07107 221 NPLELLDSSKRYVVGAGINT-RD-YAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGA---G--N-- 291 (502)
T ss_pred ChhhhhhhccCeeeeeccCh-hh-HHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEe---c--c--
Confidence 45667778899999888743 22 23344455667998887755555421 1 2333453 32221 0 0
Q ss_pred CCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCC-----C-----CHHHHHHHHHHHHHh----hcCC--CCEEEeCC
Q 017155 149 GLEDEERRCISSKILAEVDKWMERFDCLVVGPGLG-----R-----DPYLLECVSEIMKHA----RQSN--VPIVIDGD 211 (376)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~-----~-----~~~~~~~~~~il~~a----~~~~--~pvVLDpd 211 (376)
-.+.++.+.+.+ ..+|+|+||.|-| + ...++..+.++.+.+ ++.+ +|+|.|..
T Consensus 292 --------V~t~e~a~~li~--aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgG 360 (502)
T PRK07107 292 --------VVDREGFRYLAE--AGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGG 360 (502)
T ss_pred --------ccCHHHHHHHHH--cCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCC
Confidence 012333444443 3789999985554 2 123445555554433 2345 89999985
No 109
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=46.17 E-value=57 Score=33.59 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=31.7
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF 214 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ 214 (376)
+.+....+++|.|++..|++.... ++..+.+..+ .+.|+++|+....
T Consensus 51 ~~l~~a~~~~DlVIttGGlgpt~d--D~t~eava~~--~g~~l~~~~~~~~ 97 (413)
T TIGR00200 51 TIIRIASERADVLIFNGGLGPTSD--DLTAETIATA--KGEPLVLNEAWLK 97 (413)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCc--ccHHHHHHHH--hCCCcEECHHHHH
Confidence 344555678999999988876542 4455555443 5788999987553
No 110
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=45.44 E-value=26 Score=34.79 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=52.1
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcc----cccccCCceeeecccccccccCCCchhhhhhhhhh
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAP----VIKSYSPELIVHPILEESYNISGLEDEERRCISSK 161 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~----~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (376)
++++.+ ..+.+++..++.++..+.|= .+++|.-... .+...=-+.++..+.+++. .++++
T Consensus 41 ~~~~~~----~sgt~Al~~al~~l~~~~gd-eVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~-----------~id~~ 104 (363)
T PF01041_consen 41 KYAVAV----SSGTSALHLALRALGLGPGD-EVIVPAYTFPATASAILWAGAEPVFVDIDPETL-----------NIDPE 104 (363)
T ss_dssp SEEEEE----SSHHHHHHHHHHHTTGGTTS-EEEEESSS-THHHHHHHHTT-EEEEE-BETTTS-----------SB-HH
T ss_pred CeEEEe----CChhHHHHHHHHhcCCCcCc-eEecCCCcchHHHHHHHHhccEEEEEeccCCcC-----------CcCHH
Confidence 344544 34579999999998887663 4444444332 2222233444444433322 23444
Q ss_pred hHHHHHHhhccCCEEEEc--CCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 162 ILAEVDKWMERFDCLVVG--PGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 162 ~~~~l~~~l~~~davvIG--pGl~~~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
.+++..+ ++.++|++- -|...+ +.++.+.+++.+++||-|+.
T Consensus 105 ~~~~~i~--~~t~ai~~~h~~G~~~d------~~~i~~~~~~~~i~lIeD~a 148 (363)
T PF01041_consen 105 ALEKAIT--PKTKAILVVHLFGNPAD------MDAIRAIARKHGIPLIEDAA 148 (363)
T ss_dssp HHHHHHH--TTEEEEEEE-GGGB---------HHHHHHHHHHTT-EEEEE-T
T ss_pred HHHHHhc--cCccEEEEecCCCCccc------HHHHHHHHHHcCCcEEEccc
Confidence 4444432 355777764 344332 33444445678999999997
No 111
>PLN02623 pyruvate kinase
Probab=42.98 E-value=50 Score=35.51 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=36.7
Q ss_pred hhHHHHHHhhccCCEEEEcCC-----CCCCHHHHHHHHHHHHHhhcCCCCEEE
Q 017155 161 KILAEVDKWMERFDCLVVGPG-----LGRDPYLLECVSEIMKHARQSNVPIVI 208 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIGpG-----l~~~~~~~~~~~~il~~a~~~~~pvVL 208 (376)
+.++.++++++..|.+.||+| ++. ++...+.+++++.+++.++|+++
T Consensus 330 eaVeNldeIl~g~DgImIgrgDLgvelg~-~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 330 DSIPNLHSIITASDGAMVARGDLGAELPI-EEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred HHHHhHHHHHHhCCEEEECcchhhhhcCc-HHHHHHHHHHHHHHHHhCCCEEE
Confidence 456777778889999999965 221 45566888899999999999985
No 112
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=40.92 E-value=33 Score=32.40 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=48.8
Q ss_pred HHHHHHh--hccCCEEEEc-CCCCCC-------HHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCC----C
Q 017155 163 LAEVDKW--MERFDCLVVG-PGLGRD-------PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYP----L 228 (376)
Q Consensus 163 ~~~l~~~--l~~~davvIG-pGl~~~-------~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~----~ 228 (376)
++.+.++ +++..++.|| .||... +.+.+++...++.|++.+.|++|=..... ....+++++.. .
T Consensus 74 ~~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~--~~~l~il~~~~~~~~~ 151 (255)
T PF01026_consen 74 LEELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAH--EELLEILKEYGPPNLR 151 (255)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHH--HHHHHHHHHTTGGTSE
T ss_pred HHHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcH--HHHHHHHHhcccccee
Confidence 4455555 7889999999 666541 46778889999999999999999776531 00012232221 1
Q ss_pred e---eEcCCHHHHHHHh
Q 017155 229 A---VLTPNVNEYKRLV 242 (376)
Q Consensus 229 ~---vITPN~~E~~~L~ 242 (376)
. -.|.+..++.++.
T Consensus 152 ~i~H~f~g~~~~~~~~~ 168 (255)
T PF01026_consen 152 VIFHCFSGSPEEAKKFL 168 (255)
T ss_dssp EEETT--S-HHHHHHHH
T ss_pred EEEecCCCCHHHHHHHH
Confidence 1 2466777777776
No 113
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=40.92 E-value=1.9e+02 Score=29.52 Aligned_cols=107 Identities=18% Similarity=0.237 Sum_probs=59.0
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccC----CcccccccCCceeeecccccccccCCCchhhhhhhhh
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD----AAPVIKSYSPELIVHPILEESYNISGLEDEERRCISS 160 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~----~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (376)
.+.++++.|| +.+++-|+...+-.--+-|-++.... ...+...+-.++.+...+. ...+++
T Consensus 55 ~~~~~ll~gs---Gt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~w------------g~~v~p 119 (383)
T COG0075 55 NGDVVLLSGS---GTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEW------------GEAVDP 119 (383)
T ss_pred CCcEEEEcCC---cHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCC------------CCCCCH
Confidence 6789999886 55666666655544223333333221 1223455656655544321 123455
Q ss_pred hhHHHHHHhhccCCEEEEc-----CCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 161 KILAEVDKWMERFDCLVVG-----PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIG-----pGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
+++++..+.-.++++|.+= .|+..+ +.++.+.+++.+..+|+|++.
T Consensus 120 ~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp------l~~I~~~~k~~g~l~iVDaVs 170 (383)
T COG0075 120 EEVEEALDKDPDIKAVAVVHNETSTGVLNP------LKEIAKAAKEHGALLIVDAVS 170 (383)
T ss_pred HHHHHHHhcCCCccEEEEEeccCcccccCc------HHHHHHHHHHcCCEEEEEecc
Confidence 5555554422356666653 666543 445555566789999999974
No 114
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.05 E-value=51 Score=34.12 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=39.7
Q ss_pred hHHHhhCCCCC--CCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEeccc
Q 017155 67 NVMREITPVLD--PSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (376)
Q Consensus 67 ~~~~~~lp~r~--~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~ 122 (376)
+.+...+|.+. ...+-.+.++|+|++|...-+|+++.+++.-...|- .++++.|+
T Consensus 246 q~v~~~lgg~~RL~srn~~~~P~V~Ilcgpgnnggdg~v~gRHL~~~G~-~~vi~~pk 302 (453)
T KOG2585|consen 246 QAVATLLGGRKRLMSRNSHQWPLVAILCGPGNNGGDGLVCGRHLAQHGY-TPVIYYPK 302 (453)
T ss_pred HHHHHHcCccccccccccCCCceEEEEeCCCCccchhHHHHHHHHHcCc-eeEEEeec
Confidence 44556788665 555566678899999999999999998887666663 23444444
No 115
>PTZ00300 pyruvate kinase; Provisional
Probab=39.03 E-value=55 Score=34.19 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=38.8
Q ss_pred hhhHHHHHHhhccCCEEEEcCCCC----CCHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 160 SKILAEVDKWMERFDCLVVGPGLG----RDPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 160 ~~~~~~l~~~l~~~davvIGpGl~----~~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
++.++.++++++..|.|.||+|=. ..++.....+++++.+++.++|+|+=.-
T Consensus 198 ~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQ 253 (454)
T PTZ00300 198 HQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQ 253 (454)
T ss_pred HHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECc
Confidence 355778888888999999995521 1344556777888999999999998543
No 116
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=38.62 E-value=2.5e+02 Score=29.64 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=64.3
Q ss_pred CCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcc----c---ccccCCceeeecccccccccCCC
Q 017155 78 PSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAP----V---IKSYSPELIVHPILEESYNISGL 150 (376)
Q Consensus 78 ~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~----~---i~~~~pe~~~~~~~~~~~~~~~~ 150 (376)
+++-|-..|++++ |..-+...-.+.-+.+.+.+|+.++.+-+.+.... . ++...|++.+.. . +
T Consensus 220 p~a~~D~~GrL~V-gaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a-G----~---- 289 (495)
T PTZ00314 220 PNASLDSNGQLLV-GAAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA-G----N---- 289 (495)
T ss_pred chhhhccCCCEEE-EEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE-C----C----
Confidence 4555666777655 33434433446667778888999998877544322 1 233345432211 0 0
Q ss_pred chhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCC----------CHHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 151 EDEERRCISSKILAEVDKWMERFDCLVVGPGLGR----------DPYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~----------~~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
-.+.++...+.+ .-+|+|++|.|-+. ...++..+.++.+.+++.++|+|-|.--
T Consensus 290 ------V~t~~~a~~~~~--aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi 353 (495)
T PTZ00314 290 ------VVTADQAKNLID--AGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGI 353 (495)
T ss_pred ------cCCHHHHHHHHH--cCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCC
Confidence 012233344443 26899998643321 1123445556666666778898888753
No 117
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.57 E-value=1.5e+02 Score=30.21 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=25.4
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcc
Q 017155 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL 213 (376)
Q Consensus 171 ~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl 213 (376)
..+|.||++||++.+.+ .++.+++.++|++=+...+
T Consensus 67 ~~~d~vV~SpgI~~~~p-------~~~~a~~~gi~i~~~~el~ 102 (438)
T PRK04663 67 LEADLVVTNPGIALATP-------EIQQVLAAGIPVVGDIELF 102 (438)
T ss_pred ccCCEEEECCCCCCCCH-------HHHHHHHCCCcEEEHHHHH
Confidence 57899999999987543 1334456788888776643
No 118
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=38.56 E-value=2.6e+02 Score=24.07 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcc
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL 213 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl 213 (376)
+.+.+.++.+|+|+.-.|-...+ .+.++.+++.+++.+++-++--.+.
T Consensus 52 ~~~~~al~~~d~vi~~~~~~~~~--~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 52 DSVKAALKGADAVIHAAGPPPKD--VDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp HHHHHHHTTSSEEEECCHSTTTH--HHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred hhhhhhhhhcchhhhhhhhhccc--ccccccccccccccccccceeeecc
Confidence 45666677999999986554443 5677778887777777655544433
No 119
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=37.93 E-value=63 Score=26.06 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccC
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~ 123 (376)
.-+|++||| +..+.--+...++.|| -+|+++++.
T Consensus 7 ~~~vlVvGg----G~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGG----GPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp T-EEEEEEE----SHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred CCEEEEECC----CHHHHHHHHHHHhCCC-EEEEECCch
Confidence 457999999 4455555556666785 788888875
No 120
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.25 E-value=1.4e+02 Score=29.11 Aligned_cols=88 Identities=27% Similarity=0.268 Sum_probs=54.0
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccc-----cccCCc-eeeecccccccccCCCchhhhhh
Q 017155 84 QAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVI-----KSYSPE-LIVHPILEESYNISGLEDEERRC 157 (376)
Q Consensus 84 ~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i-----~~~~pe-~~~~~~~~~~~~~~~~~~~~~~~ 157 (376)
-.|+|.+|.|. +.|=|---|..-.+.|+.++.++-...--..+ +...++ +.+.++.=. +. ++
T Consensus 10 ~~~kvVvITGA--SsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs--------~~--~~ 77 (282)
T KOG1205|consen 10 LAGKVVLITGA--SSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVS--------DE--ES 77 (282)
T ss_pred hCCCEEEEeCC--CcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccC--------CH--HH
Confidence 35999999995 55555556777778898877776654433323 455666 555553210 11 11
Q ss_pred hhhhhHHHHHHhhccCCEEEEcCCCCC
Q 017155 158 ISSKILAEVDKWMERFDCLVVGPGLGR 184 (376)
Q Consensus 158 ~~~~~~~~l~~~l~~~davvIGpGl~~ 184 (376)
+ .+.++++...+.+.|+++-+-|+..
T Consensus 78 ~-~~~~~~~~~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 78 V-KKFVEWAIRHFGRVDVLVNNAGISL 103 (282)
T ss_pred H-HHHHHHHHHhcCCCCEEEecCcccc
Confidence 1 1223444555678999999988876
No 121
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=37.22 E-value=1.2e+02 Score=27.49 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=56.7
Q ss_pred EEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCccc---ccccCCceeeecccccccccCCCchhhhhhhhhhhHH
Q 017155 88 IAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPV---IKSYSPELIVHPILEESYNISGLEDEERRCISSKILA 164 (376)
Q Consensus 88 vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~---i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (376)
|+|+|++ +.-|..+..++.. .|. -|++++-...... +...--+++...+ .+.+
T Consensus 1 I~V~Gat-G~~G~~v~~~L~~--~~~-~V~~l~R~~~~~~~~~l~~~g~~vv~~d~--------------------~~~~ 56 (233)
T PF05368_consen 1 ILVTGAT-GNQGRSVVRALLS--AGF-SVRALVRDPSSDRAQQLQALGAEVVEADY--------------------DDPE 56 (233)
T ss_dssp EEEETTT-SHHHHHHHHHHHH--TTG-CEEEEESSSHHHHHHHHHHTTTEEEES-T--------------------T-HH
T ss_pred CEEECCc-cHHHHHHHHHHHh--CCC-CcEEEEeccchhhhhhhhcccceEeeccc--------------------CCHH
Confidence 4666665 6667777666655 444 4777776553322 2222223332221 1235
Q ss_pred HHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 165 ~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
.+.+.++.+|+|.+-.+...+. ..+.-..+++.+++.+++.++ +..
T Consensus 57 ~l~~al~g~d~v~~~~~~~~~~-~~~~~~~li~Aa~~agVk~~v-~ss 102 (233)
T PF05368_consen 57 SLVAALKGVDAVFSVTPPSHPS-ELEQQKNLIDAAKAAGVKHFV-PSS 102 (233)
T ss_dssp HHHHHHTTCSEEEEESSCSCCC-HHHHHHHHHHHHHHHT-SEEE-ESE
T ss_pred HHHHHHcCCceEEeecCcchhh-hhhhhhhHHHhhhccccceEE-EEE
Confidence 6777788999999886543222 244566777777777888777 543
No 122
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=36.89 E-value=39 Score=28.73 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEeccc
Q 017155 84 QAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (376)
Q Consensus 84 ~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~ 122 (376)
+..++++||. +|++-.++.+....|+.-++++...
T Consensus 11 ~~~~vlviGa----Gg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGA----GGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESS----SHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECC----HHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3468888875 7888777777777799988887643
No 123
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.56 E-value=48 Score=26.71 Aligned_cols=44 Identities=16% Similarity=0.398 Sum_probs=25.5
Q ss_pred HHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCE-EEeCCccc
Q 017155 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPI-VIDGDGLF 214 (376)
Q Consensus 165 ~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pv-VLDpdgl~ 214 (376)
++.+...++|+++++|-+- ..+.++-+.+.+.++|+ ++|+..-.
T Consensus 43 ~~~~~~~~~Dvill~pqi~------~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (95)
T TIGR00853 43 AAGEKLDDADVVLLAPQVA------YMLPDLKKETDKKGIPVEVINGAQYG 87 (95)
T ss_pred HHHhhcCCCCEEEECchHH------HHHHHHHHHhhhcCCCEEEeChhhcc
Confidence 4444567899999987331 12333333444567785 56766443
No 124
>PRK06739 pyruvate kinase; Validated
Probab=34.73 E-value=86 Score=31.64 Aligned_cols=71 Identities=8% Similarity=0.153 Sum_probs=46.3
Q ss_pred hhHHHHHHhhccCCEEEEc---CCCCCC-HHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHH
Q 017155 161 KILAEVDKWMERFDCLVVG---PGLGRD-PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVN 236 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIG---pGl~~~-~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~ 236 (376)
+.++.+.++++.+|.|.|. .|+-.. ++.-.+-+++++.+++.++|+|+=.-.+.-+. .. | .|-..
T Consensus 218 ~av~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~-------~~-p---~PTRA 286 (352)
T PRK06739 218 EAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMV-------DH-S---IPTRA 286 (352)
T ss_pred HHHHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhc-------cC-C---CCChH
Confidence 4567788888889999998 333222 33444556688889999999998665442221 11 2 57777
Q ss_pred HHHHHh
Q 017155 237 EYKRLV 242 (376)
Q Consensus 237 E~~~L~ 242 (376)
|..-++
T Consensus 287 EvsDVa 292 (352)
T PRK06739 287 EVTDVF 292 (352)
T ss_pred HHHHHH
Confidence 776664
No 125
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.22 E-value=1.3e+02 Score=30.67 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=24.7
Q ss_pred ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 171 ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 171 ~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
..+|.|+++||++.+.. .++.+++.++|++=+++.
T Consensus 66 ~~~d~vv~spgi~~~~p-------~~~~a~~~~i~v~~~~~~ 100 (445)
T PRK04308 66 NGFDILALSPGISERQP-------DIEAFKQNGGRVLGDIEL 100 (445)
T ss_pred hCCCEEEECCCCCCCCH-------HHHHHHHcCCcEEEhHHH
Confidence 57899999999987533 133455678888766654
No 126
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=34.14 E-value=1.6e+02 Score=28.45 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=28.1
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccC
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~ 123 (376)
-+|+|||. +|-|-.++..-.|+|.|-++++=...
T Consensus 31 s~VlVvG~----GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGI----GGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECc----CHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 47898865 68888889999999999999886653
No 127
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=33.94 E-value=3.9e+02 Score=25.10 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=25.4
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccC
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~ 123 (376)
-+|+++|. +|-|-..+..-.++|.|-++++=+..
T Consensus 25 ~~VlvvG~----GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 25 SRVLIVGL----GGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CcEEEECc----CHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 47888864 57777777777889999988865443
No 128
>PRK09206 pyruvate kinase; Provisional
Probab=33.73 E-value=77 Score=33.28 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=37.7
Q ss_pred hhHHHHHHhhccCCEEEEcCCCC----CCHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 161 KILAEVDKWMERFDCLVVGPGLG----RDPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIGpGl~----~~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
+.++.++++++-.|.|.||+|=. ..++.....+++++.+++.++|+|+=.-
T Consensus 225 eav~nldeIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATq 279 (470)
T PRK09206 225 EGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQ 279 (470)
T ss_pred HHHHhHHHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEch
Confidence 45667777777899999995521 1345556778888999999999998443
No 129
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.42 E-value=1.3e+02 Score=31.09 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=20.8
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEe
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVF 119 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~ 119 (376)
.+|+|||+ +++|+.++....+.|.. |+++
T Consensus 17 ~~v~viG~----G~~G~~~A~~L~~~G~~-V~~~ 45 (480)
T PRK01438 17 LRVVVAGL----GVSGFAAADALLELGAR-VTVV 45 (480)
T ss_pred CEEEEECC----CHHHHHHHHHHHHCCCE-EEEE
Confidence 47888887 66888777777777875 5554
No 130
>PRK06354 pyruvate kinase; Provisional
Probab=32.88 E-value=80 Score=34.13 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=37.0
Q ss_pred hhHHHHHHhhccCCEEEEcCCCC----CCHHHHHHHHHHHHHhhcCCCCEEE
Q 017155 161 KILAEVDKWMERFDCLVVGPGLG----RDPYLLECVSEIMKHARQSNVPIVI 208 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIGpGl~----~~~~~~~~~~~il~~a~~~~~pvVL 208 (376)
+.++.++++++-.|.|.||+|=. ..++...+.+++++.+++.++|+|+
T Consensus 231 eav~nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 231 EAIDNIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVIT 282 (590)
T ss_pred HHHHhHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 45677777777899999996521 1345667788899999999999996
No 131
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=32.69 E-value=31 Score=27.15 Aligned_cols=27 Identities=41% Similarity=0.514 Sum_probs=14.8
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhcccC
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKIGAD 114 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~Gag 114 (376)
-+|||||+|-+|+=|.-.+ +|++.|+.
T Consensus 40 K~VLViGaStGyGLAsRIa--~aFg~gA~ 66 (78)
T PF12242_consen 40 KKVLVIGASTGYGLASRIA--AAFGAGAD 66 (78)
T ss_dssp SEEEEES-SSHHHHHHHHH--HHHCC--E
T ss_pred ceEEEEecCCcccHHHHHH--HHhcCCCC
Confidence 4799999998886443332 23444443
No 132
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.68 E-value=1.5e+02 Score=30.85 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=24.1
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
++.+|.|+.+||++.+.. .++.+++.++|++=|..
T Consensus 68 l~~~D~VV~SpGi~~~~p-------~~~~a~~~gi~v~~~ie 102 (488)
T PRK03369 68 IADYALVVTSPGFRPTAP-------VLAAAAAAGVPIWGDVE 102 (488)
T ss_pred hhcCCEEEECCCCCCCCH-------HHHHHHHCCCcEeeHHH
Confidence 356899999999987643 13445567888875543
No 133
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=32.54 E-value=1.2e+02 Score=28.99 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=35.9
Q ss_pred HHHHHHhhc--cCCEEEEc-CCCCCC------HHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 163 LAEVDKWME--RFDCLVVG-PGLGRD------PYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 163 ~~~l~~~l~--~~davvIG-pGl~~~------~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
++++.+++. ...++.|| .|+... +...+++...++.|++.+.||+|=...
T Consensus 78 ~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~ 136 (258)
T PRK11449 78 LDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR 136 (258)
T ss_pred HHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 445555443 22688999 788521 246788888899999999999998765
No 134
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=32.43 E-value=2.5e+02 Score=24.69 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=20.3
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCC
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDA 124 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~ 124 (376)
|..++-||.. |---.++.+|+..| |.+.-+.|+..
T Consensus 31 g~~lv~Gg~~---GlM~a~a~ga~~~g-g~viGVlp~~l 65 (159)
T TIGR00725 31 GHILINGGRT---GVMEAVSKGAREAG-GLVVGILPDED 65 (159)
T ss_pred CCEEEcCCch---hHHHHHHHHHHHCC-CeEEEECChhh
Confidence 5555556544 44344455666665 67777777654
No 135
>PRK06247 pyruvate kinase; Provisional
Probab=32.23 E-value=97 Score=32.60 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=38.2
Q ss_pred hhHHHHHHhhccCCEEEEcCCCC---CC-HHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 161 KILAEVDKWMERFDCLVVGPGLG---RD-PYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIGpGl~---~~-~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
+.++.+++++.-.|.+.||+|=. -. ++...+.+++++.+++.++|+|+=.-.
T Consensus 222 eav~nldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQm 277 (476)
T PRK06247 222 QAIDRLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQM 277 (476)
T ss_pred HHHHhHHHHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECch
Confidence 45677777777899999995522 11 455667788889999999999985543
No 136
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.80 E-value=1e+02 Score=24.48 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=28.9
Q ss_pred HHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeC
Q 017155 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDG 210 (376)
Q Consensus 165 ~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDp 210 (376)
.+...++++|.|++=.+.... +.+..+-+.+++.++|++.=-
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH----~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSH----NAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcCh----HHHHHHHHHHHHcCCcEEEEC
Confidence 466667899999996555433 345555566778999987644
No 137
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.72 E-value=1.9e+02 Score=28.92 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=54.4
Q ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhhc-CCC-----CEEEeCCcccccccchhhhcc-----CCCeeEcCCHHHHHHHh
Q 017155 174 DCLVVGPGLGRDPYLLECVSEIMKHARQ-SNV-----PIVIDGDGLFLVTNSIDLVSG-----YPLAVLTPNVNEYKRLV 242 (376)
Q Consensus 174 davvIGpGl~~~~~~~~~~~~il~~a~~-~~~-----pvVLDpdgl~ll~~~~~ll~~-----~~~~vITPN~~E~~~L~ 242 (376)
.+|.+|+|=+. ...+.+.++++.+++ .+. .+-||..|..-- ..++... .-.++=.||...-+++.
T Consensus 151 gvV~mggGEPL--ln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~--i~~l~~~~~~~~laisLka~d~e~r~~l~ 226 (342)
T PRK14454 151 NIVLMGSGEPL--DNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPK--IYELADENLQITLAISLHAPNDELRKKMM 226 (342)
T ss_pred CEEEECCchhh--cCHHHHHHHHHHHhcccccCcCCCceEEECcCChhH--HHHHHhhcccceEEEecCCCCHHHHHHhc
Confidence 44557765332 234567777777765 466 789999986421 1111111 11356678888888887
Q ss_pred cccccCCCCCCcHHHHHHHHHHhhCCeE----EEEcCCce
Q 017155 243 QKVLNCEVNDRDAPELLQSLAKQIGGVT----ILQKGKSD 278 (376)
Q Consensus 243 g~~~~~~v~~~d~~~~a~~la~~~~~~v----VllKG~~~ 278 (376)
+..-.. .-+++.++++++..+.+..+ ++++|-+|
T Consensus 227 pv~~~~--~L~~l~~~~~~~~~~~~~rv~iey~LI~gvND 264 (342)
T PRK14454 227 PIANKY--SIEELIEACKYYINKTNRRITFEYALVKGVND 264 (342)
T ss_pred CCcccC--CHHHHHHHHHHHHHHhCCEEEEEEEeECCCCC
Confidence 643110 11345555666555544333 37788653
No 138
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=31.63 E-value=96 Score=33.13 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=26.2
Q ss_pred HHHHHHhhccCCEEEEcCCCCCC--HHHHHHHHHHHHHhhcCCCCE
Q 017155 163 LAEVDKWMERFDCLVVGPGLGRD--PYLLECVSEIMKHARQSNVPI 206 (376)
Q Consensus 163 ~~~l~~~l~~~davvIGpGl~~~--~~~~~~~~~il~~a~~~~~pv 206 (376)
++.+.++ --+|+||||||-|.. .+-.-++.++++.++ .+|+
T Consensus 56 ~~~l~q~-~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~~--~iPi 98 (767)
T KOG1224|consen 56 YHYLYQD-VAFDAIVVGPGPGSPMCAADIGICLRLLLECR--DIPI 98 (767)
T ss_pred HHHHhhc-cccceEEecCCCCCCCcHHHHHHHHHHHHhcC--CCce
Confidence 3444433 358999999988765 455566677776653 4554
No 139
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=31.23 E-value=5.9e+02 Score=26.63 Aligned_cols=112 Identities=20% Similarity=0.304 Sum_probs=59.0
Q ss_pred CCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCC-ccc------ccccCCc--eeeecccccccccCCC
Q 017155 80 KHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDA-APV------IKSYSPE--LIVHPILEESYNISGL 150 (376)
Q Consensus 80 ~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~-~~~------i~~~~pe--~~~~~~~~~~~~~~~~ 150 (376)
..+...|++.+ ++.-+.....+-.+.+-+.+|+.++.+-+++.. ..+ +....|+ ++....
T Consensus 209 a~~d~~g~l~V-~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v---------- 277 (486)
T PRK05567 209 ACKDEQGRLRV-GAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNV---------- 277 (486)
T ss_pred cccccCCCEEE-EeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEecc----------
Confidence 34445566554 544343334566777777889998766554322 111 2334444 233221
Q ss_pred chhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCC----------CHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 151 EDEERRCISSKILAEVDKWMERFDCLVVGPGLGR----------DPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~----------~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
.+.++...+.+ ..+|+|.+|.|-++ ...+.+.+.++.+.+++.++|+|-|.-
T Consensus 278 -------~t~e~a~~l~~--aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGG 339 (486)
T PRK05567 278 -------ATAEAARALIE--AGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGG 339 (486)
T ss_pred -------CCHHHHHHHHH--cCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence 13333444443 26899988744321 112345666666555556778777764
No 140
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=31.18 E-value=2.9e+02 Score=25.33 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=23.1
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCC
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDA 124 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~ 124 (376)
-+|+|||| +..+.-.+..-+..|| -||++.|+..
T Consensus 10 k~vlVvGg----G~va~rk~~~Ll~~ga-~VtVvsp~~~ 43 (205)
T TIGR01470 10 RAVLVVGG----GDVALRKARLLLKAGA-QLRVIAEELE 43 (205)
T ss_pred CeEEEECc----CHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence 48999998 2334444556667787 6788887654
No 141
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.05 E-value=1.9e+02 Score=29.48 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=56.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhhc-----CCC---CEEEeCCcccccccchhhhcc-----CCCeeEcCCHHHHHHH
Q 017155 175 CLVVGPGLGRDPYLLECVSEIMKHARQ-----SNV---PIVIDGDGLFLVTNSIDLVSG-----YPLAVLTPNVNEYKRL 241 (376)
Q Consensus 175 avvIGpGl~~~~~~~~~~~~il~~a~~-----~~~---pvVLDpdgl~ll~~~~~ll~~-----~~~~vITPN~~E~~~L 241 (376)
++..|+| ..-...+.+.++++.+++ .++ .+-++.+|+.-.- .++.+. ...++=.||.....+|
T Consensus 180 VvfmGmG--EPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i--~~la~~~l~~~LavSLha~d~e~R~~l 255 (373)
T PRK14459 180 VVFMGMG--EPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAI--RKLADEGLPVTLAVSLHAPDDELRDEL 255 (373)
T ss_pred EEEecCC--cchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHH--HHHHHhcCCeEEEEEeCCCCHHHHHHh
Confidence 5555544 332234566666666654 244 7889999864211 111111 1256779999999999
Q ss_pred hcccccCCCCCCcHHHHHHHHHHhhCC----eEEEEcCCce
Q 017155 242 VQKVLNCEVNDRDAPELLQSLAKQIGG----VTILQKGKSD 278 (376)
Q Consensus 242 ~g~~~~~~v~~~d~~~~a~~la~~~~~----~vVllKG~~~ 278 (376)
.+..-. ..-+++.++++.+.++.+. -+|+++|-+|
T Consensus 256 ~p~n~~--~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvND 294 (373)
T PRK14459 256 VPVNTR--WKVDEVLDAARYYADATGRRVSIEYALIRDIND 294 (373)
T ss_pred cCcccC--CCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCC
Confidence 874311 1224567777888765442 3478888654
No 142
>PRK03673 hypothetical protein; Provisional
Probab=30.63 E-value=68 Score=32.85 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcc
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL 213 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl 213 (376)
+.+...++++|.|++..|++.... +...+.+-++ .+.|+++|+...
T Consensus 52 ~~l~~a~~~~DlVI~tGGlGpt~d--D~t~~avA~a--~g~~L~~d~e~~ 97 (396)
T PRK03673 52 AILRERSQHADVLIVNGGLGPTSD--DLSALAAATA--AGEGLVLHEEWL 97 (396)
T ss_pred HHHHHHhccCCEEEEcCCCCCCCc--ccHHHHHHHH--cCCCceeCHHHH
Confidence 344555678999999988887532 3444544333 678999999865
No 143
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.62 E-value=1.1e+02 Score=31.01 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=22.9
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 172 ~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
.+|.||.+||+..+.. +++.+++.++|++=++.
T Consensus 68 ~~d~vV~s~gi~~~~~-------~~~~a~~~~i~v~~~~e 100 (447)
T PRK02472 68 DFDLMVKNPGIPYTNP-------MVEKALEKGIPIITEVE 100 (447)
T ss_pred cCCEEEECCCCCCCCH-------HHHHHHHCCCcEEeHHH
Confidence 3899999999987643 23445567888875554
No 144
>PRK01215 competence damage-inducible protein A; Provisional
Probab=30.61 E-value=2.7e+02 Score=26.77 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=31.0
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCccc
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLF 214 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ 214 (376)
+.+.+.++++|.|++..|++.... +...+.+..+ .+.+++.|+....
T Consensus 54 ~~l~~a~~~~DlVIttGG~g~t~d--D~t~eaia~~--~g~~l~~~~e~~~ 100 (264)
T PRK01215 54 SAFREAIDRADVVVSTGGLGPTYD--DKTNEGFAKA--LGVELELNEDALR 100 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCcCChh--hhHHHHHHHH--hCCCCCCCHHHHH
Confidence 345555667899999988887543 4555555443 4667888865543
No 145
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=30.01 E-value=2e+02 Score=29.06 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=55.7
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCc-ccccccCCceeee-cccccccccCCCchhhhhhhhhhhH
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA-PVIKSYSPELIVH-PILEESYNISGLEDEERRCISSKIL 163 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~-~~i~~~~pe~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (376)
.||.|||+| +|+|.-++.-+..-- ..- +.+++..... ..+....|.+--. .+. + ..-+.
T Consensus 3 ~kV~IvGas-GYtG~EL~rlL~~Hp-~ve-~~~~ss~~~~g~~~~~~~p~l~g~~~l~--------~--------~~~~~ 63 (349)
T COG0002 3 IKVGIVGAS-GYTGLELLRLLAGHP-DVE-LILISSRERAGKPVSDVHPNLRGLVDLP--------F--------QTIDP 63 (349)
T ss_pred ceEEEEcCC-CCcHHHHHHHHhcCC-CeE-EEEeechhhcCCchHHhCcccccccccc--------c--------ccCCh
Confidence 588999998 999998876554322 222 4444444322 2344444443200 000 0 00001
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccc
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVT 217 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~ 217 (376)
+.+ ..+.+|++.+. ++ +....+++.++++ .++ .|||.++-..+.
T Consensus 64 ~~~--~~~~~DvvFla--lP-hg~s~~~v~~l~~----~g~-~VIDLSadfR~~ 107 (349)
T COG0002 64 EKI--ELDECDVVFLA--LP-HGVSAELVPELLE----AGC-KVIDLSADFRLK 107 (349)
T ss_pred hhh--hcccCCEEEEe--cC-chhHHHHHHHHHh----CCC-eEEECCcccccC
Confidence 122 23468999997 44 4455666666653 344 399999876655
No 146
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.97 E-value=1.5e+02 Score=30.83 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=23.0
Q ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 170 MERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 170 l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
++++|.|+++||++.+.. . ++.+++.++|++=|..
T Consensus 72 ~~~~d~vV~Spgi~~~~p---~----~~~a~~~gi~v~~~~e 106 (473)
T PRK00141 72 LDSFSLVVTSPGWRPDSP---L----LVDAQSQGLEVIGDVE 106 (473)
T ss_pred hcCCCEEEeCCCCCCCCH---H----HHHHHHCCCceeeHHH
Confidence 457899999999987532 1 2334556777764443
No 147
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=29.85 E-value=1.7e+02 Score=30.48 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=58.6
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcccccccCCceeeecccccccccCCCchhhhhhhhhhhHH
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILA 164 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (376)
+-+|+.+-| .|.|+. |..-.++|.|..|.-. .+..++-.....+.++.++.+- +.++
T Consensus 135 R~kIikF~G--~YHG~~---D~~lv~agsg~~t~g~-p~s~Gvp~~~a~~ti~~~yND~-----------------~al~ 191 (432)
T COG0001 135 RDKIIKFEG--CYHGHS---DSLLVKAGSGAATLGS-PSSPGVPADVAKHTLVLPYNDL-----------------EALE 191 (432)
T ss_pred CCeEEEEcC--CCCCCc---cHHHhhcCcCcccCCC-CCCCCCChhhhccEEEecCCCH-----------------HHHH
Confidence 467888888 466653 4445556666655554 3334444455566677666421 1233
Q ss_pred HHHHhh-ccCCEEEEc-----CCCC-CCHHHHHHHHHHHHHhhcCCCCEEEeCCcc
Q 017155 165 EVDKWM-ERFDCLVVG-----PGLG-RDPYLLECVSEIMKHARQSNVPIVIDGDGL 213 (376)
Q Consensus 165 ~l~~~l-~~~davvIG-----pGl~-~~~~~~~~~~~il~~a~~~~~pvVLDpdgl 213 (376)
++.+.. ++.-+|++= +|+. +.+ +++..+-+.+++++.-+|+|=+..
T Consensus 192 ~~~~~~g~~IAaVIvEPv~gn~g~i~p~~---~Fl~~Lr~lt~e~G~lLI~DEViT 244 (432)
T COG0001 192 EAFEEYGDDIAAVIVEPVAGNMGVVPPEP---GFLEGLRELTEEHGALLIFDEVIT 244 (432)
T ss_pred HHHHHcCCcEEEEEeccccCCCCCCCCCH---HHHHHHHHHHHHcCcEEEEecchh
Confidence 333222 234455553 5553 333 456666666778999999999854
No 148
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=29.71 E-value=1.8e+02 Score=27.47 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeE
Q 017155 191 CVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVT 270 (376)
Q Consensus 191 ~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~v 270 (376)
....+++..++.|+++-||=-|....+ .+.++++++++||=+..-...+.... ......+..-.++++.+ ..
T Consensus 137 ~~~~~l~~L~~~G~~ialDDFGtG~ss--l~~L~~l~~d~iKID~~fi~~i~~~~-----~~~~iv~~iv~la~~l~-~~ 208 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSS--LSYLKRLPPDILKIDRSFVRDLETDA-----RDQAIVRAIVALAHKLG-LT 208 (256)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHH--HHHHhhCCCCeEEECHHHHhhcccCc-----chHHHHHHHHHHHHHCC-CE
Confidence 456677778889999999998887554 34566688999999998888775321 12245677778888887 45
Q ss_pred EEEcCC
Q 017155 271 ILQKGK 276 (376)
Q Consensus 271 VllKG~ 276 (376)
|+.-|-
T Consensus 209 vvaEGV 214 (256)
T COG2200 209 VVAEGV 214 (256)
T ss_pred EEEeec
Confidence 555563
No 149
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=28.87 E-value=1.2e+02 Score=29.24 Aligned_cols=44 Identities=25% Similarity=0.681 Sum_probs=30.1
Q ss_pred hHHHHHHhh-ccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEE-eCC
Q 017155 162 ILAEVDKWM-ERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVI-DGD 211 (376)
Q Consensus 162 ~~~~l~~~l-~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVL-Dpd 211 (376)
+++.+++.+ +++|+|+|.| .+. ..+...++++++.++|||. |.+
T Consensus 80 Q~~~i~~~ia~~~daIiv~~---~d~---~~~~~~v~~a~~aGIpVv~~d~~ 125 (322)
T COG1879 80 QIAQIEDLIAQGVDAIIINP---VDP---DALTPAVKKAKAAGIPVVTVDSD 125 (322)
T ss_pred HHHHHHHHHHcCCCEEEEcC---CCh---hhhHHHHHHHHHCCCcEEEEecC
Confidence 445555543 6899999986 343 2466778888889999764 443
No 150
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.85 E-value=5.6e+02 Score=26.42 Aligned_cols=114 Identities=20% Similarity=0.286 Sum_probs=60.1
Q ss_pred CCCCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcc-c------ccccCCce--eeecccccccccC
Q 017155 78 PSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAP-V------IKSYSPEL--IVHPILEESYNIS 148 (376)
Q Consensus 78 ~~~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~-~------i~~~~pe~--~~~~~~~~~~~~~ 148 (376)
+++-|-..|+.++.+.. +.....+--+.+...+|++++.+=+...... + +....|++ |...+.
T Consensus 132 ~~a~~d~~~~l~v~aav-g~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~------- 203 (404)
T PRK06843 132 PNACKDLNNKLRVGAAV-SIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV------- 203 (404)
T ss_pred chhhhhhhcCeEEEEEE-eCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecC-------
Confidence 45566667777765443 2223344455566778999999766654321 1 23344553 222211
Q ss_pred CCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCC----------CHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 149 GLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGR----------DPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~----------~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
+.++...+.++ -+|+|++|.|-+. ....+..+.++-+.+++.++|||-|.-
T Consensus 204 ----------T~e~a~~l~~a--GaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGG 264 (404)
T PRK06843 204 ----------TKEAALDLISV--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGG 264 (404)
T ss_pred ----------CHHHHHHHHHc--CCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCC
Confidence 22233344332 6899999854332 011234444444444456788887764
No 151
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.81 E-value=4.2e+02 Score=26.45 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=57.7
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccCCcc------------------------cccccCCceeeeccc
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAP------------------------VIKSYSPELIVHPIL 141 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~~~~------------------------~i~~~~pe~~~~~~~ 141 (376)
-+|+|||- +|-|-..+..-.++|.|-++++=...+.. .+....|++-+..+.
T Consensus 29 ~~VlivG~----GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 29 AKVAVIGA----GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred CeEEEECC----CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 57888854 56666777777888999988876554221 112344554443321
Q ss_pred ccccccCCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 142 EESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
. .++. +...++++.+|+|+-.. .+......+.++ +.+.++|+|.=..
T Consensus 105 ~--------------~i~~---~~~~~~~~~~DvVvd~~---d~~~~r~~~n~~---c~~~~ip~v~~~~ 151 (355)
T PRK05597 105 R--------------RLTW---SNALDELRDADVILDGS---DNFDTRHLASWA---AARLGIPHVWASI 151 (355)
T ss_pred e--------------ecCH---HHHHHHHhCCCEEEECC---CCHHHHHHHHHH---HHHcCCCEEEEEE
Confidence 1 1222 23445567899999873 344433344433 4567899887554
No 152
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=27.62 E-value=1.5e+02 Score=25.19 Aligned_cols=22 Identities=18% Similarity=0.007 Sum_probs=14.1
Q ss_pred HHHHHHhcccCeeEEecccCCcc
Q 017155 104 AAISALKIGADLSHVFCTKDAAP 126 (376)
Q Consensus 104 Aa~aAlr~Gaglvt~~t~~~~~~ 126 (376)
++.+|...| |.|.-+.|+...+
T Consensus 4 ~~~ga~~~g-G~viGi~p~~~~~ 25 (133)
T PF03641_consen 4 VAKGAKEAG-GRVIGIIPEFLFP 25 (133)
T ss_dssp HHHHHHHTT-TTEEEEEETTGTT
T ss_pred HHHHHHHcC-CeEEEEecCcccc
Confidence 356667666 5677777766554
No 153
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=27.51 E-value=1.2e+02 Score=25.49 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=31.4
Q ss_pred hhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 155 RRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 155 ~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
.+.++.+.++.+...-.+.++++||.|-....-..+ +. +..++.++.+.+-+..
T Consensus 37 ~~~l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~-~~---~~l~~~gi~vevm~T~ 90 (114)
T cd05125 37 FEDITEESLSLFELLEPRPEILVIGTGRKSRPLSPE-LR---KYFKKLGIAVEVVDTR 90 (114)
T ss_pred hhhCCHHHHHHHHhccCCCCEEEEccCCCCCcCCHH-HH---HHHHHcCCEEEEECHH
Confidence 345666777777766568899999988743211111 22 2233467766554443
No 154
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.44 E-value=82 Score=25.36 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=19.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhcccCeeEEeccc
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~ 122 (376)
++++||. +..|...+.+......+.-++.++.+.
T Consensus 2 ~v~iiG~--G~~g~~~~~~~~~~~~~~~v~~v~d~~ 35 (120)
T PF01408_consen 2 RVGIIGA--GSIGRRHLRALLRSSPDFEVVAVCDPD 35 (120)
T ss_dssp EEEEEST--SHHHHHHHHHHHHTTTTEEEEEEECSS
T ss_pred EEEEECC--cHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 5778887 444666665655554555555444443
No 155
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=27.43 E-value=1.8e+02 Score=26.19 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEE
Q 017155 192 VSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTI 271 (376)
Q Consensus 192 ~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vV 271 (376)
+...++..++.|+.+.||-.+..... .+.+...+++.|+=+...+..+.... ......+....+++..+ ..|
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~--~~~l~~~~~d~iKld~~~~~~~~~~~-----~~~~~l~~l~~~~~~~~-~~v 205 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSS--LSYLKRLPVDYLKIDRSFVRDIETDP-----EDRAIVRAIIALAHSLG-LKV 205 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhh--HHHHHhCCCCEEEECHHHHHhHhcCh-----hhHHHHHHHHHHHHHCC-CeE
Confidence 55666777789999999988765433 23344567889999988888775421 11345566667776666 566
Q ss_pred EEcCC
Q 017155 272 LQKGK 276 (376)
Q Consensus 272 llKG~ 276 (376)
+..|-
T Consensus 206 ia~gV 210 (240)
T cd01948 206 VAEGV 210 (240)
T ss_pred EEEec
Confidence 77774
No 156
>PLN02762 pyruvate kinase complex alpha subunit
Probab=27.20 E-value=1.3e+02 Score=31.83 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=37.0
Q ss_pred hhhHHHHHHhhccCCEEEEc---CCCCCC-HHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 160 SKILAEVDKWMERFDCLVVG---PGLGRD-PYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 160 ~~~~~~l~~~l~~~davvIG---pGl~~~-~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
++.++.++++++.+|.|.|. .|+-.. ++.-.+-+++++.|++.++|+|+=.-
T Consensus 256 ~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQ 311 (509)
T PLN02762 256 LDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQ 311 (509)
T ss_pred HHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECc
Confidence 35577888888899999998 333333 23344456688899999999998443
No 157
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=26.04 E-value=3.2e+02 Score=25.34 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=51.8
Q ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhcc---CCCeeEcCCHHHHHHHhcccccC
Q 017155 172 RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSG---YPLAVLTPNVNEYKRLVQKVLNC 248 (376)
Q Consensus 172 ~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~---~~~~vITPN~~E~~~L~g~~~~~ 248 (376)
....|.++.|=+. -..+++.++++.+++.++.+.+|..|..-.....+++.. .-.++--.+.....+++|.+
T Consensus 38 sggGVt~SGGEPl--lq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~--- 112 (213)
T PRK10076 38 SGGGVTLSGGEVL--MQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMN--- 112 (213)
T ss_pred CCCEEEEeCchHH--cCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCC---
Confidence 3468888755322 123567788888888999999999986432211122221 22456666777888888753
Q ss_pred CCCCCcHHHHHHHHHHh
Q 017155 249 EVNDRDAPELLQSLAKQ 265 (376)
Q Consensus 249 ~v~~~d~~~~a~~la~~ 265 (376)
.+...+.++.+.+.
T Consensus 113 ---~~~il~nl~~l~~~ 126 (213)
T PRK10076 113 ---LPRVLENLRLLVSE 126 (213)
T ss_pred ---HHHHHHHHHHHHhC
Confidence 12344555555553
No 158
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=25.90 E-value=1.4e+02 Score=29.98 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=59.2
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHHhc--ccCeeEEecccCCccc-------ccccCCceeeecccccccccCCCchhhh
Q 017155 85 AGKIAVIGGCREYTGAPYFAAISALKI--GADLSHVFCTKDAAPV-------IKSYSPELIVHPILEESYNISGLEDEER 155 (376)
Q Consensus 85 ~G~vliIgGs~~~~GA~ilAa~aAlr~--Gaglvt~~t~~~~~~~-------i~~~~pe~~~~~~~~~~~~~~~~~~~~~ 155 (376)
.+++++ |-+..-.-+--..+-+.+ |++++.+=+.+..... ++...|...+.. . +
T Consensus 95 ~~~~~v---svG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~via---G--N--------- 157 (343)
T TIGR01305 95 LQNVAV---SSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMA---G--N--------- 157 (343)
T ss_pred cceEEE---EeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEE---e--c---------
Confidence 455555 223333333333333444 5788888887765442 344556533221 0 0
Q ss_pred hhhhhhhHHHHHHhhccCCEEEEcCCCCCCH----------HHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 156 RCISSKILAEVDKWMERFDCLVVGPGLGRDP----------YLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 156 ~~~~~~~~~~l~~~l~~~davvIGpGl~~~~----------~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
-.++++.+.+.+ .-+|+|+||.|-|..- .++..+.+..+.++..++|+|.|..
T Consensus 158 -V~T~e~a~~Li~--aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGG 220 (343)
T TIGR01305 158 -VVTGEMVEELIL--SGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGG 220 (343)
T ss_pred -ccCHHHHHHHHH--cCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCC
Confidence 123444455544 3799999995544321 3566777777777667888998875
No 159
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.60 E-value=2.5e+02 Score=28.50 Aligned_cols=32 Identities=25% Similarity=0.151 Sum_probs=21.8
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEeccc
Q 017155 86 GKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (376)
Q Consensus 86 G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~ 122 (376)
-+|+|+|+. +.|+-++...++.|+. |++....
T Consensus 6 k~v~iiG~g----~~G~~~A~~l~~~G~~-V~~~d~~ 37 (450)
T PRK14106 6 KKVLVVGAG----VSGLALAKFLKKLGAK-VILTDEK 37 (450)
T ss_pred CEEEEECCC----HHHHHHHHHHHHCCCE-EEEEeCC
Confidence 567888763 3667677777888985 5555443
No 160
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.62 E-value=5.6e+02 Score=25.65 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=28.0
Q ss_pred CCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEeccc
Q 017155 82 KGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (376)
Q Consensus 82 Kg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~ 122 (376)
|-..-+|+|| +.+|.|-..+..-.++|.|-++++=..
T Consensus 132 ~l~~~~Vlvv----G~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLI----GAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEE----CCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3445678888 346778888888889999988888665
No 161
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=24.44 E-value=4.6e+02 Score=24.52 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHHH
Q 017155 75 VLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISA 108 (376)
Q Consensus 75 ~r~~~~hKg~~G~vliIgGs~~~~GA~ilAa~aA 108 (376)
+.....||-...+|++|.||-..+--.-..+..+
T Consensus 16 ~~~~~~~~~~~~kI~~I~GSlR~~S~n~~la~~~ 49 (219)
T TIGR02690 16 PLFSATHKPHIPRILLLYGSLRERSYSRLLAEEA 49 (219)
T ss_pred hccCCCCCCCCCEEEEEECCCCCcchHHHHHHHH
Confidence 3455789999999999999976665555444433
No 162
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=24.35 E-value=5.4e+02 Score=23.33 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=26.5
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccC
Q 017155 84 QAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (376)
Q Consensus 84 ~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~ 123 (376)
..-+|++||- +|-|-..+..-.++|+|-++++=+..
T Consensus 20 ~~~~VlviG~----GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGA----GGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECC----CHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 3357888863 56677777788888999888876553
No 163
>PLN02461 Probable pyruvate kinase
Probab=23.78 E-value=1.7e+02 Score=31.11 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=36.5
Q ss_pred hhhHHHHHHhhccCCEEEEc---CCCCCC-HHHHHHHHHHHHHhhcCCCCEEEeC
Q 017155 160 SKILAEVDKWMERFDCLVVG---PGLGRD-PYLLECVSEIMKHARQSNVPIVIDG 210 (376)
Q Consensus 160 ~~~~~~l~~~l~~~davvIG---pGl~~~-~~~~~~~~~il~~a~~~~~pvVLDp 210 (376)
++.++.+.++++.+|.|.|. .|+-.. ++...+-+++++.+++.++|+|+=.
T Consensus 245 ~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvAT 299 (511)
T PLN02461 245 QEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTAT 299 (511)
T ss_pred HHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEee
Confidence 35577888888999999998 333222 2333445678888999999999744
No 164
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=23.74 E-value=2.4e+02 Score=28.35 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=24.5
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEec
Q 017155 84 QAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFC 120 (376)
Q Consensus 84 ~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t 120 (376)
..++|+|||. +++|..++..+.+.|+- |+++-
T Consensus 166 ~~~~VlViGa----G~vG~~aa~~a~~lGa~-V~v~d 197 (370)
T TIGR00518 166 EPGDVTIIGG----GVVGTNAAKMANGLGAT-VTILD 197 (370)
T ss_pred CCceEEEEcC----CHHHHHHHHHHHHCCCe-EEEEE
Confidence 4577898854 68889999988888984 66654
No 165
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=23.68 E-value=2.4e+02 Score=25.37 Aligned_cols=77 Identities=17% Similarity=0.300 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHHHHhcccccCCCCCCcHHHHHHHHHHhhCCeEE
Q 017155 192 VSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGVTI 271 (376)
Q Consensus 192 ~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~~L~g~~~~~~v~~~d~~~~a~~la~~~~~~vV 271 (376)
....++..++.|+.+.||-.+..... .+.+...+++.||=+..-+..+.... ......+....+++..+ ..|
T Consensus 135 ~~~~i~~l~~~G~~ialddfg~~~~~--~~~l~~l~~d~iKld~~~~~~~~~~~-----~~~~~l~~l~~~~~~~~-~~v 206 (241)
T smart00052 135 AVATLQRLRELGVRIALDDFGTGYSS--LSYLKRLPVDLLKIDKSFVRDLQTDP-----EDEAIVQSIIELAQKLG-LQV 206 (241)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCcHHH--HHHHHhCCCCeEEECHHHHhhhccCh-----hHHHHHHHHHHHHHHCC-CeE
Confidence 33556667788999999988765433 23344466888888877766654211 11234556667777666 456
Q ss_pred EEcCC
Q 017155 272 LQKGK 276 (376)
Q Consensus 272 llKG~ 276 (376)
+..|-
T Consensus 207 ia~gV 211 (241)
T smart00052 207 VAEGV 211 (241)
T ss_pred EEecC
Confidence 66774
No 166
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=23.65 E-value=77 Score=28.77 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=81.4
Q ss_pred hhhCCCCCccCcccccccccccCccccCChhhHH-HhhCCCCCCCCCCCCCCeEEEEecCCCCCCHHHHHHHH-----HH
Q 017155 36 RSLGGYSDHIEPRRMQDIRSMSGTTFEADAENVM-REITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAIS-----AL 109 (376)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lp~r~~~~hKg~~G~vliIgGs~~~~GA~ilAa~a-----Al 109 (376)
+-+|..++.+.|+.+-.||+++.+.+++.--|+= .+-+.+-.++.+-.+.|-|+++--||.+.=..-..-+. .-
T Consensus 35 kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eer 114 (185)
T KOG0073|consen 35 KLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEER 114 (185)
T ss_pred HhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhh
Confidence 3446668999999999999998888755533311 11122223456667789999999999887655544332 22
Q ss_pred hcccCeeEEecccCCcccccccCCceeeecccccccccCCCchhhhhhhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHH
Q 017155 110 KIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLL 189 (376)
Q Consensus 110 r~Gaglvt~~t~~~~~~~i~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~ 189 (376)
.+|+.+.-++.-++..+.+. +|.+.. .-.+.++++..++-+++....+.+...
T Consensus 115 laG~~~Lvlank~dl~~~l~---~~~i~~------------------------~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 115 LAGAPLLVLANKQDLPGALS---LEEISK------------------------ALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred hcCCceEEEEecCcCccccC---HHHHHH------------------------hhCHHHhccccCceEEEEeccccccHH
Confidence 34777666665555432222 121110 123445557788888875555555555
Q ss_pred HHHHHHHHHh
Q 017155 190 ECVSEIMKHA 199 (376)
Q Consensus 190 ~~~~~il~~a 199 (376)
+-+..++...
T Consensus 168 ~gidWL~~~l 177 (185)
T KOG0073|consen 168 EGIDWLCDDL 177 (185)
T ss_pred HHHHHHHHHH
Confidence 5566555443
No 167
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=22.80 E-value=5.1e+02 Score=27.54 Aligned_cols=36 Identities=31% Similarity=0.250 Sum_probs=26.7
Q ss_pred CCCCCCCeEEEEecCCCCCCHHHHHHHHHHhcccCeeEEec
Q 017155 80 KHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFC 120 (376)
Q Consensus 80 ~hKg~~G~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t 120 (376)
..+-...+|+|+|. +.+|++|...|.+.|| -|+++-
T Consensus 160 aG~~pg~kVlViGa----G~iGL~Ai~~Ak~lGA-~V~a~D 195 (509)
T PRK09424 160 AGKVPPAKVLVIGA----GVAGLAAIGAAGSLGA-IVRAFD 195 (509)
T ss_pred cCCcCCCEEEEECC----cHHHHHHHHHHHHCCC-EEEEEe
Confidence 34556788999986 6788888888888899 455553
No 168
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=22.66 E-value=53 Score=27.02 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=29.4
Q ss_pred hhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 157 CISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 157 ~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
.++.++++.+.....+.+.++||.|-..-. .-.++.+..++.++.+.+-...
T Consensus 38 ~l~~~~l~~l~~~~p~pe~liiGtG~~~~~----~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 38 DLTPEDLEELLELEPKPEVLIIGTGKRQLF----LPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp CEETHHHHHHHCTCCS-SEEEEEETTS-SE----CTHHHHHHHHTTT-EEEEE-HH
T ss_pred cCCHHHHHHHHhccCCCcEEEEccCCcccc----CCHHHHHHHHHcCCeEEEECHH
Confidence 456677788877666899999998854321 1122233345678777655543
No 169
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=22.47 E-value=2.1e+02 Score=26.08 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=33.0
Q ss_pred HHHHHHhhccCCEEEEc-CCCCCC------HHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 163 LAEVDKWMERFDCLVVG-PGLGRD------PYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 163 ~~~l~~~l~~~davvIG-pGl~~~------~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
++++++.++...+..|| .|+... +...+.+..+++.+++.++||++=..
T Consensus 74 ~~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~ 129 (251)
T cd01310 74 LDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSR 129 (251)
T ss_pred HHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 45566666655677775 444321 13456778888889999999999865
No 170
>PTZ00066 pyruvate kinase; Provisional
Probab=22.18 E-value=1.5e+02 Score=31.52 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=35.8
Q ss_pred hhhHHHHHHhhccCCEEEEcC---CCCCC-HHHHHHHHHHHHHhhcCCCCEEEeC
Q 017155 160 SKILAEVDKWMERFDCLVVGP---GLGRD-PYLLECVSEIMKHARQSNVPIVIDG 210 (376)
Q Consensus 160 ~~~~~~l~~~l~~~davvIGp---Gl~~~-~~~~~~~~~il~~a~~~~~pvVLDp 210 (376)
++.++.++++++.+|.|.|.- |+-.. ++.-.+-+++++.+++.++|+|+=.
T Consensus 261 ~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvAT 315 (513)
T PTZ00066 261 IEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITAT 315 (513)
T ss_pred HHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEec
Confidence 345778888888999999983 33222 2333445667888999999999743
No 171
>PRK08275 putative oxidoreductase; Provisional
Probab=22.07 E-value=94 Score=32.96 Aligned_cols=33 Identities=36% Similarity=0.368 Sum_probs=24.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccC
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~ 123 (376)
-|+|||| ++||+.||+.|...|.|+-.++..+.
T Consensus 11 DVlVIG~----G~AGl~AAi~aa~~g~g~~VilveK~ 43 (554)
T PRK08275 11 DILVIGG----GTAGPMAAIKAKERNPALRVLLLEKA 43 (554)
T ss_pred CEEEECc----CHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 4889987 78999999999988766544444433
No 172
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=22.02 E-value=3.8e+02 Score=27.02 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=19.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhcccCeeEEecccC
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKD 123 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~~ 123 (376)
+|+||||. +.+..-+.++.++|- .+++++...
T Consensus 2 kiliiG~G----~~~~~l~~~~~~~~~-~~~~~~~~~ 33 (423)
T TIGR00877 2 KVLVIGNG----GREHALAWKLAQSPL-VKYVYVAPG 33 (423)
T ss_pred EEEEECCC----hHHHHHHHHHHhCCC-ccEEEEECC
Confidence 68999984 335555666666652 345554444
No 173
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=22.01 E-value=1.7e+02 Score=24.09 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=27.5
Q ss_pred hhhhhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCC
Q 017155 157 CISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGD 211 (376)
Q Consensus 157 ~~~~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpd 211 (376)
.++.++++.+...- ..++++||.|-.......+ +. +..++.++.+-+-..
T Consensus 38 ~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~-~~---~~l~~~gI~vE~m~T 87 (109)
T cd00248 38 DLDPEALLPLLAED-RPDILLIGTGAEIAFLPRA-LR---AALRAAGIGVEVMST 87 (109)
T ss_pred cCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHH-HH---HHHHHcCCeEEEeCc
Confidence 35666677666532 4899999988744211112 22 223446776644443
No 174
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=21.79 E-value=2.2e+02 Score=25.99 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=35.2
Q ss_pred hHHHHHHhhccCCEEEEc-CCCCC----C--HHHHHHHHHHHHHhhcCCCCEEEeCCc
Q 017155 162 ILAEVDKWMERFDCLVVG-PGLGR----D--PYLLECVSEIMKHARQSNVPIVIDGDG 212 (376)
Q Consensus 162 ~~~~l~~~l~~~davvIG-pGl~~----~--~~~~~~~~~il~~a~~~~~pvVLDpdg 212 (376)
.++++.+.+++..+..|| .|+.. + ....+.+...++.+++.++||++=...
T Consensus 73 ~~~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~ 130 (252)
T TIGR00010 73 DIKELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARD 130 (252)
T ss_pred HHHHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecC
Confidence 345666666677788887 44532 1 113567888888888899999998764
No 175
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.51 E-value=1.2e+02 Score=27.04 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=32.4
Q ss_pred HHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccc
Q 017155 164 AEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVT 217 (376)
Q Consensus 164 ~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~ 217 (376)
+.+.++++++|.|++..|++.... +...+.+..+ .+.+++.|+.....+.
T Consensus 50 ~~l~~~~~~~dlVIttGG~G~t~~--D~t~ea~~~~--~~~~l~~~~e~~~~i~ 99 (170)
T cd00885 50 EALRRASERADLVITTGGLGPTHD--DLTREAVAKA--FGRPLVLDEEALERIE 99 (170)
T ss_pred HHHHHHHhCCCEEEECCCCCCCCC--ChHHHHHHHH--hCCCcccCHHHHHHHH
Confidence 345555668999999888876432 3444444433 5778999998765443
No 176
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=21.12 E-value=98 Score=28.97 Aligned_cols=112 Identities=19% Similarity=0.183 Sum_probs=55.2
Q ss_pred HHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHH-HhhcCCCCEEEeCCcccccccchhhhccC---CCeeEcCCHHHH
Q 017155 163 LAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMK-HARQSNVPIVIDGDGLFLVTNSIDLVSGY---PLAVLTPNVNEY 238 (376)
Q Consensus 163 ~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~-~a~~~~~pvVLDpdgl~ll~~~~~ll~~~---~~~vITPN~~E~ 238 (376)
...+..+-..+|+|++|.|.-..+...-.++ ..+ ...++..++|+|..+---.. ..+++.. +..++|.+..|-
T Consensus 34 r~~vh~lRa~~daIlvG~~TV~~DnP~Ltvr-~~~~~~~~~P~rVIlD~~~rlp~~--~~v~~~~~~~p~~v~~~~~~~~ 110 (218)
T COG1985 34 RADVHELRAESDAILVGSGTVLADNPSLTVR-LPEGGEERNPVRVILDSRLRLPLD--SRVFRTGEGAPTIVVTTEPEEK 110 (218)
T ss_pred HHHHHHHHHHcCEEEECccEEEeeCCccccc-cCCCCccCCCEEEEECCCCcCCch--hhhhccCCCCcEEEEecCchhh
Confidence 3444555568999999977654221111111 111 11235567999998643222 1233322 335566655332
Q ss_pred HHHhcc---c-ccCCCCCCcHHHHHHHHHHhhCCeEEEEcCCce
Q 017155 239 KRLVQK---V-LNCEVNDRDAPELLQSLAKQIGGVTILQKGKSD 278 (376)
Q Consensus 239 ~~L~g~---~-~~~~v~~~d~~~~a~~la~~~~~~vVllKG~~~ 278 (376)
.+.+.. . +.......|.....++|.++.- ..|++-|+..
T Consensus 111 ~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~~i-~~vlvEGG~~ 153 (218)
T COG1985 111 LRELKEAGVEVILLPDGRVDLAALLEELAERGI-NSVLVEGGAT 153 (218)
T ss_pred hhHHHhCCCEEEEcCCCccCHHHHHHHHHhCCC-cEEEEccCHH
Confidence 222211 0 0000012467777888888752 3566677654
No 177
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=20.84 E-value=1.5e+02 Score=26.30 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=27.0
Q ss_pred hhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEE
Q 017155 169 WMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIV 207 (376)
Q Consensus 169 ~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvV 207 (376)
.+.++|.++|.+|-+...+ .+...++++.+.+.++|++
T Consensus 39 ~~~~~d~iii~Gg~~~~~d-~~~~~~~i~~~~~~~~Pil 76 (192)
T PF00117_consen 39 DLDDYDGIIISGGPGSPYD-IEGLIELIREARERKIPIL 76 (192)
T ss_dssp HTTTSSEEEEECESSSTTS-HHHHHHHHHHHHHTTSEEE
T ss_pred hhcCCCEEEECCcCCcccc-ccccccccccccccceEEE
Confidence 3678999999988765332 4556666777777788875
No 178
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.79 E-value=7.3e+02 Score=25.03 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=55.5
Q ss_pred CCEEEEcCCCCCCHHHHHHHHHHHHHhhcC-CC-----CEEEeCCcccccccchhhhcc-CCC----eeEcCCHHHHHHH
Q 017155 173 FDCLVVGPGLGRDPYLLECVSEIMKHARQS-NV-----PIVIDGDGLFLVTNSIDLVSG-YPL----AVLTPNVNEYKRL 241 (376)
Q Consensus 173 ~davvIGpGl~~~~~~~~~~~~il~~a~~~-~~-----pvVLDpdgl~ll~~~~~ll~~-~~~----~vITPN~~E~~~L 241 (376)
..++..|+|=+- ...+.+.++++.+++. +. .+-||.+|..- ...++... .++ ++=-||...-.+|
T Consensus 162 ~~vVfmGmGEPL--~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~--~i~~L~~~dl~v~LaiSLha~d~e~r~~l 237 (356)
T PRK14462 162 VNIVYMGMGEPL--DNLDNVSKAIKIFSENDGLAISPRRQTISTSGLAS--KIKKLGEMNLGVQLAISLHAVDDELRSEL 237 (356)
T ss_pred CCeEEeCCcccc--cCHHHHHHHHHHhcCccCCCcCCCceEEECCCChH--HHHHHHhcCCCeEEEEECCCCCHHHHHHh
Confidence 466667655332 3346777778777663 55 56999998641 11122111 111 2446888888888
Q ss_pred hcccccCCCCCCcHHHHHHHHHHhhCC----eEEEEcCCce
Q 017155 242 VQKVLNCEVNDRDAPELLQSLAKQIGG----VTILQKGKSD 278 (376)
Q Consensus 242 ~g~~~~~~v~~~d~~~~a~~la~~~~~----~vVllKG~~~ 278 (376)
.+..-.. .-+++.+.++.+.++.+. -+++++|-+|
T Consensus 238 ~pv~~~~--~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvND 276 (356)
T PRK14462 238 MPINKAY--NIESIIDAVRKFPIDQRKRVMFEYLVIKDVND 276 (356)
T ss_pred CCCCccC--CHHHHHHHHHHHHHHhCCeEEEEEEEECCCCC
Confidence 8753211 113456666666644332 3467777654
No 179
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=20.67 E-value=96 Score=32.25 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=23.9
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhcccCeeEEeccc
Q 017155 87 KIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTK 122 (376)
Q Consensus 87 ~vliIgGs~~~~GA~ilAa~aAlr~Gaglvt~~t~~ 122 (376)
-|+|||| ++||+.||+.|...|. |.++.-.
T Consensus 4 DVlVVG~----G~AGl~AA~~aa~~G~--V~lleK~ 33 (488)
T TIGR00551 4 DVVVIGS----GAAGLSAALALADQGR--VIVLSKA 33 (488)
T ss_pred cEEEECc----cHHHHHHHHHHHhCCC--EEEEEcc
Confidence 3888887 7899999999988886 6666544
No 180
>PRK03670 competence damage-inducible protein A; Provisional
Probab=20.62 E-value=1.9e+02 Score=27.71 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=30.4
Q ss_pred HHHHhhc-cCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccc
Q 017155 165 EVDKWME-RFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVT 217 (376)
Q Consensus 165 ~l~~~l~-~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~ 217 (376)
.+...+. .+|.|++..|++.... +...+.+..+ .+.++++|+.....+.
T Consensus 52 ~l~~a~~~~~DlVIttGGlGpt~d--D~T~eava~a--~g~~l~~~~e~~~~i~ 101 (252)
T PRK03670 52 VVLEILSRKPEVLVISGGLGPTHD--DVTMLAVAEA--LGRELVLCEDCLERIK 101 (252)
T ss_pred HHHHHhhCCCCEEEECCCccCCCC--CchHHHHHHH--hCCCCcCCHHHHHHHH
Confidence 3444344 4799999988876432 2333333332 6789999999776554
No 181
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=20.42 E-value=2e+02 Score=22.11 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=37.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhhcCCCCEEEeCCcccccccchhhhccCCCeeEcCCHHHHH
Q 017155 175 CLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYK 239 (376)
Q Consensus 175 avvIGpGl~~~~~~~~~~~~il~~a~~~~~pvVLDpdgl~ll~~~~~ll~~~~~~vITPN~~E~~ 239 (376)
++++..|-. +++..+...++.+.+++.++.+.+|.....+-..........-|.+|.....|++
T Consensus 2 v~Ii~~~~~-~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~ 65 (94)
T PF03129_consen 2 VVIIPVGKK-DEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELE 65 (94)
T ss_dssp EEEEESSCS-HHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHH
T ss_pred EEEEEeCCC-cHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHh
Confidence 455654332 4456667777778888889999999865543221111111122666666666665
No 182
>PLN02765 pyruvate kinase
Probab=20.39 E-value=2e+02 Score=30.74 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=35.5
Q ss_pred hhhHHHHHHhhccCCEEEEc---CCCCCC-HHHHHHHHHHHHHhhcCCCCEEE
Q 017155 160 SKILAEVDKWMERFDCLVVG---PGLGRD-PYLLECVSEIMKHARQSNVPIVI 208 (376)
Q Consensus 160 ~~~~~~l~~~l~~~davvIG---pGl~~~-~~~~~~~~~il~~a~~~~~pvVL 208 (376)
++.++.+.++++.+|.|.|. .|+-.. ++.-.+-+++++.|++.++|+|.
T Consensus 259 ~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~ 311 (526)
T PLN02765 259 VEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 311 (526)
T ss_pred HHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE
Confidence 35577888888899999998 334333 23344556678889999999985
No 183
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=20.33 E-value=1.2e+02 Score=28.96 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=27.6
Q ss_pred hhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCC-EEEeCCcc
Q 017155 161 KILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVP-IVIDGDGL 213 (376)
Q Consensus 161 ~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~p-vVLDpdgl 213 (376)
+.++...++++++|.+++ +|++-. ..-...+.+.+++.+.| ++|++...
T Consensus 193 ~~~~~a~~~~~~aDlllv---iGTSl~-V~pa~~l~~~a~~~g~~viiIN~~~t 242 (260)
T cd01409 193 DRVVTAAARLAEADALLV---LGSSLM-VYSGYRFVLAAAEAGLPIAIVNIGPT 242 (260)
T ss_pred HHHHHHHHHHhcCCEEEE---eCcCce-ecchhhHHHHHHHCCCcEEEEcCCCC
Confidence 346667777788887766 444321 11123445555566776 46676643
No 184
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=20.11 E-value=1.8e+02 Score=29.02 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=30.7
Q ss_pred hhhHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHhhcCCCC---EEEeCCcc
Q 017155 160 SKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVP---IVIDGDGL 213 (376)
Q Consensus 160 ~~~~~~l~~~l~~~davvIGpGl~~~~~~~~~~~~il~~a~~~~~p---vVLDpdgl 213 (376)
.+.++++..+...+++-++... .++ ++..+++...+.+.|+| +|+||-..
T Consensus 161 ~en~~~i~~lA~~y~~~Vva~s--~~D--ln~ak~L~~~l~~~Gi~~edIviDP~~~ 213 (319)
T PRK04452 161 EDNYKKIAAAAMAYGHAVIAWS--PLD--INLAKQLNILLTELGVPRERIVMDPTTG 213 (319)
T ss_pred HHHHHHHHHHHHHhCCeEEEEc--HHH--HHHHHHHHHHHHHcCCCHHHEEEeCCcc
Confidence 3456666666677777666532 121 45666666666667764 78888654
Done!