RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017155
(376 letters)
>3rss_A Putative uncharacterized protein; unknown function,
ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET:
NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A*
3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A*
3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A*
3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Length = 502
Score = 170 bits (434), Expect = 1e-48
Identities = 83/309 (26%), Positives = 138/309 (44%), Gaps = 35/309 (11%)
Query: 66 ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA 125
++R + P HKG GK+ +I G R Y+GAP + + +LK+G L +
Sbjct: 225 REMVRSLLPERPRDSHKGTYGKVLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFPQN 284
Query: 126 PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD 185
+ S PELI PI D E+ S + L E + + D + +GPGLG +
Sbjct: 285 LIATSRFPELISVPI-----------DTEKGFFSLQNLQECLELSKDVDVVAIGPGLGNN 333
Query: 186 PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKV 245
++ E V+E +K P VID D + ++ S+ P AVLTP+ E RL
Sbjct: 334 EHVREFVNEFLKTL---EKPAVIDADAINVLDTSVLKERKSP-AVLTPHPGEMARL---- 385
Query: 246 LNCEVND-RDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPR-RCGGQGD 303
+ V D + EL + AK+ V +L K + +++DGE +I G+ GG GD
Sbjct: 386 VKKTVGDVKYNYELAEEFAKENDCVLVL-KSATTIVTDGEKTL-FNITGNTGLSKGGSGD 443
Query: 304 ILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIE 363
+L+G +A F+ +Q + L AA L + +R ++++
Sbjct: 444 VLTGMIAGFI-----------AQGLSPLEASTVSVYLHGFAAELF-EQDERGLTASELLR 491
Query: 364 CLGRSLEDI 372
+ ++ +
Sbjct: 492 LIPEAIRRL 500
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like
superfamily, structur genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus
faecalis} PDB: 2r3e_A
Length = 310
Score = 150 bits (382), Expect = 6e-43
Identities = 63/309 (20%), Positives = 116/309 (37%), Gaps = 43/309 (13%)
Query: 66 ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA 125
++++ E+ +K G++ +IGG R+Y GA + + + GA L+ V
Sbjct: 25 KDILEEVITQRPSDSYKSNFGRVVLIGGNRQYGGAIIMSTEACINSGAGLTTVITDVKNH 84
Query: 126 PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD 185
+ + PE +V E + +E+ D +++GPGLG D
Sbjct: 85 GPLHARCPEAMVVGFEETV--------------------LLTNVVEQADVILIGPGLGLD 124
Query: 186 PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKV 245
+ + ++ + ++IDG + L + ++ V TP+ E++RL
Sbjct: 125 ATAQQILKMVLAQHQ-KQQWLIIDGSAITLFSQGNFSLTYPEKVVFTPHQMEWQRL---- 179
Query: 246 LNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLI-SDGEIAKSVSIYGSPR-RCGGQGD 303
+ + ++ Q ++G +L K I GE + G+P GG GD
Sbjct: 180 SHLPI-EQQTLANNQRQQAKLGSTIVL-KSHRTTIFHAGEPF--QNTGGNPGMATGGTGD 235
Query: 304 ILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIE 363
L+G +A FL +Q PT+ L K L T I +
Sbjct: 236 TLAGIIAGFL-----------AQFKPTIETIAGAVYLHSLIGDDLAK-TDYVVLPTKISQ 283
Query: 364 CLGRSLEDI 372
L ++
Sbjct: 284 ALPTYMKKY 292
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer
sandwich, unknown function; 2.50A {Streptococcus mutans}
Length = 311
Score = 150 bits (380), Expect = 1e-42
Identities = 61/316 (19%), Positives = 112/316 (35%), Gaps = 54/316 (17%)
Query: 66 ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA 125
+ + ++I + HKG G++ +IGG Y GA AA++ + GA L V KD
Sbjct: 39 DLLTKKIIKPRPLNSHKGTFGRVLLIGGNYPYGGAIIMAALACVNSGAGLVTVATHKDNI 98
Query: 126 PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD 185
+ S+ PE + ++E+ + + + D +++GPGL D
Sbjct: 99 TALHSHLPEAMAFDMVEKD--------------------RLSEQITAADVVLMGPGLAED 138
Query: 186 PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKV 245
+ + ++IDG + L+ + +LTP+ E++RL
Sbjct: 139 DLAQTTFDVVWQAIE-PKQTLIIDGSAINLLAKRKPAIWPTKQIILTPHQKEWERL---- 193
Query: 246 LNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRC------- 298
+ ++ +LA ++ K I G
Sbjct: 194 SGLTIPEQIEAATQTALAHFPKETILVAKSHQTKIYQG---------QKIGHIQVGGPYQ 244
Query: 299 --GGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRST 356
GG GD L+G +A F+ A+ + A L A K +
Sbjct: 245 ATGGMGDTLAGMIAGFV----AQFHTDRFE------VAAAAVFLHSYIADQLSK-EAYVV 293
Query: 357 LTTDIIECLGRSLEDI 372
L T I + R ++++
Sbjct: 294 LPTRISAEITRVMKEM 309
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics,
PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis}
PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A*
3rqq_A* 3rqx_A* 1kyh_A
Length = 279
Score = 137 bits (347), Expect = 4e-38
Identities = 59/313 (18%), Positives = 110/313 (35%), Gaps = 51/313 (16%)
Query: 66 ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAA 125
E +R P D HKG G ++ G + GA A + A++ G + +++
Sbjct: 11 EEHVRATLPERDAESHKGTYGTALLLAGSDDMPGAALLAGLGAMRSGLGKLVIGTSENVI 70
Query: 126 PVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD 185
P+I PE + A + E + + +GPGL +
Sbjct: 71 PLIVPVLPEATYWRDGWKK-------------------AADAQLEETYRAIAIGPGLPQT 111
Query: 186 PYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKV 245
+ + V ++ ++ P+++D L +LTP+ E+ R+
Sbjct: 112 ESVQQAVDHVL----TADCPVILDAGAL----AKRTYPKREGPVILTPHPGEFFRM---- 159
Query: 246 LNCEVND--RDAPELLQSLAKQIGGVTILQKGKSDLIS--DGEIAKSVSIYGSPR-RCGG 300
VN+ + E + A Q+ V +L KG +I+ DG+ ++ G+ GG
Sbjct: 160 TGVPVNELQKKRAEYAKEWAAQLQTVIVL-KGNQTVIAFPDGDCW--LNPTGNGALAKGG 216
Query: 301 QGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDK-KRSTLTT 359
GD L+G + L + L A L + + L
Sbjct: 217 TGDTLTGMILGML-----------CCHEDPKHAVLNAVYLHGACAELWTDEHSAHTLLAH 265
Query: 360 DIIECLGRSLEDI 372
++ + L R +
Sbjct: 266 ELSDILPRVWKRF 278
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, ,
structural genomics, protein structure initiative; 2.60A
{Helicobacter pylori}
Length = 475
Score = 126 bits (319), Expect = 1e-32
Identities = 57/293 (19%), Positives = 104/293 (35%), Gaps = 64/293 (21%)
Query: 81 HKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPI 140
HKG G V+ G +++GA +A+SAL G+ + V + + P +V
Sbjct: 232 HKGDYGHAHVLLG--KHSGAGLLSALSALSFGSGVVSVQALECEITS--NNKPLELVF-- 285
Query: 141 LEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHAR 200
+ + +G GL P E+
Sbjct: 286 -------------------------CENFPNLLSAFALGMGLENIPKDFNRWLEL----- 315
Query: 201 QSNVPIVIDGDGLFLVTNSIDLVSGYPL-AVLTPNVNEYKRLV-QKVLNCEVND--RDAP 256
P V+D +++ AVLTP+ E+ L+ +N + + +
Sbjct: 316 ---APCVLDAGVF----YHKEILQALEKEAVLTPHPKEFLSLLNLVGINISMLELLDNKL 368
Query: 257 ELLQSLAKQIGGVTILQKGKSDLIS-DGEIAKSVSIYGSPR-RCGGQGDILSGSVAVFLS 314
E+ + +++ V +L KG + LI+ G++ ++I GS G GD+L+G + L
Sbjct: 369 EIARDFSQKYPKVVLLLKGANTLIAHQGQVF--INILGSVALAKAGSGDVLAGLILSLL- 425
Query: 315 WARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLTTDIIECLGR 367
SQ + I S A+ + D+IE + +
Sbjct: 426 ----------SQNYTPLDAAINASLAHALASLEF--KNNYALTPLDLIEKIKQ 466
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase,
structural genomics, riken structural
genomics/proteomics initiative; 1.85A {Pyrococcus
horikoshii} SCOP: c.72.1.2 PDB: 3hpd_A
Length = 265
Score = 75.3 bits (185), Expect = 1e-15
Identities = 35/205 (17%), Positives = 74/205 (36%), Gaps = 26/205 (12%)
Query: 158 ISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLV- 216
+ + E+++ + D +V+ G + + + + A + PIV+D G
Sbjct: 42 VMAHAEEELEEMIRLADAVVINIGTLDSGWR-RSMVKATEIANELGKPIVLDPVGAGATK 100
Query: 217 --TNSIDLVSGYPLAVLTPNVNEYKRLVQK------VLNCEVNDRDAPELLQSLAKQIGG 268
T + + VL N E L+ + V + E + +A +L + A++
Sbjct: 101 FRTRVSLEILSRGVDVLKGNFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREFNT 160
Query: 269 VTILQKGKSDLISDGEIAKSVSIYGSPR--RCGGQGDILSGSVAVFLSWARAKGKATTSQ 326
+ G D +SDG +V G R G G +++ F++
Sbjct: 161 TVAV-TGAVDYVSDGRRTFAVY-NGHELLGRVTGTGCMVAALTGAFVA------------ 206
Query: 327 MNPTVLGCIAGSALLRKAASLAFKD 351
+ + + AA A+++
Sbjct: 207 VTEPLKATTSALVTFGIAAEKAYEE 231
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A
{Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A
1esj_A 1esq_A*
Length = 272
Score = 66.1 bits (161), Expect = 2e-12
Identities = 40/204 (19%), Positives = 74/204 (36%), Gaps = 28/204 (13%)
Query: 160 SKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL----FL 215
+ EV + LV+ G +E + K A + VP+++D G F
Sbjct: 46 AYAKEEVADMAKIAGALVLNIGTL-SKESVEAMIIAGKSANEHGVPVILDPVGAGATPFR 104
Query: 216 VTNSIDLVSGYPLAVLTPNVNEYKRL------VQKVLNCEVNDRDAPELLQSLAKQIGGV 269
++ D++ LA + N E + K ++ D L Q A+++ V
Sbjct: 105 TESARDIIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTV 164
Query: 270 TILQKGKSDLISDGEIAKSVSIY-GSPR--RCGGQGDILSGSVAVFLSWARAKGKATTSQ 326
+ G+ D+I+D +++ G + G G +L+ V F +
Sbjct: 165 IAIT-GEVDVIADTS--HVYTLHNGHKLLTKVTGAGCLLTSVVGAFC-----------AV 210
Query: 327 MNPTVLGCIAGSALLRKAASLAFK 350
+ IA + AA LA +
Sbjct: 211 EENPLFAAIAAISSYGVAAQLAAQ 234
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1,
structural genomics, joint center for structural
genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Length = 273
Score = 60.8 bits (147), Expect = 1e-10
Identities = 36/212 (16%), Positives = 65/212 (30%), Gaps = 33/212 (15%)
Query: 160 SKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL----FL 215
+ E + ++ LV+ G + + +ARQ N V+D G
Sbjct: 46 ADDPREFPQMFQQTSALVLNLGHL-SQEREQSLLAASDYARQVNKLTVVDLVGYGASDIR 104
Query: 216 VTNSIDLVSGYPLAVLTPNVNEYKRLVQ-----------KVLNCEVNDRDAPELLQSLAK 264
LV P V+ N++E + Q + E + + L+ +
Sbjct: 105 NEVGEKLVHNQP-TVVKGNLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQ 163
Query: 265 QIGGVTILQKGKSDLISDGEIAKSVSIY-GSPR--RCGGQGDILSGSVAVFLSWARAKGK 321
+ L G D++ E + + + G P G GD++ VA L A
Sbjct: 164 KFPQTVFLATGIQDVLVSQE--QVIVLQNGVPELDCFTGTGDLVGALVAALLGEGNAPMT 221
Query: 322 ATTSQMNPTVLGCIAGSALLRKAASLAFKDKK 353
A +A + A +
Sbjct: 222 AA-----------VAAVSYFNLCGEKAKTKSQ 242
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 8e-09
Identities = 67/454 (14%), Positives = 134/454 (29%), Gaps = 158/454 (34%)
Query: 10 GF-------ASLGSVKNCMLASSAVFRRQQFL--------IRSLGGYSDHIEPRRMQDIR 54
G+ + +G + F +L L +D + + I+
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENC-YLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 55 SMSGTTFEADA---ENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAP--YFAAISAL 109
+ A ++ L + +G A +A+ GG G YF
Sbjct: 125 N----YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG----QGNTDDYF------ 170
Query: 110 KIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSKILAE---- 165
+L ++ T Y +V +++ S L + R + ++ +
Sbjct: 171 ---EELRDLYQT---------YHV--LVGDLIKFSAET--LSELIRTTLDAEKVFTQGLN 214
Query: 166 VDKWMERFDCLVVGPGLGRDPYLLEC-VSEIMKHARQSNVPIVIDGDGL-----FLVT-N 218
+ +W+E P YLL +S P++ G+ ++VT
Sbjct: 215 ILEWLENPSNT---PD---KDYLLSIPIS----------CPLI----GVIQLAHYVVTAK 254
Query: 219 SIDL-----------VSGYPLAVLT-------PNVNEYKRLVQKVLN------CEV---- 250
+ +G+ ++T + + V+K +
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 251 -NDRDAPELLQ-SLAKQIG---------GVT------ILQKGKSDLISDGEIAKSVSIYG 293
N P +L+ SL G +T + K S L + ++ +S+
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV--EISLVN 372
Query: 294 SPRRCGGQGDILSG---SVAVFLSWARAKGKATT---------SQMNPTVLGC---IAG- 337
+ ++SG S+ R K KA + S+ +A
Sbjct: 373 GAKNL-----VVSGPPQSLYGLNLTLR-KAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 338 --SALLRKAASLAFKDKKRSTLTTDIIECLGRSL 369
S LL A+ L KD L + + + +
Sbjct: 427 FHSHLLVPASDLINKD-----LVKNNVSFNAKDI 455
Score = 43.1 bits (101), Expect = 2e-04
Identities = 40/220 (18%), Positives = 66/220 (30%), Gaps = 59/220 (26%)
Query: 180 PGLGRDPYLLECVSEIMKHARQSNVPIVID-GDGLFLVTN--SI-DLVSGYP--LAVLTP 233
G+G D Y S+ A+ V + D F T SI D+V P L +
Sbjct: 1629 QGMGMDLYK---TSKA---AQD-----VWNRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 234 NVNEYKRLVQK--VLNCEVNDRDAPELLQSLAKQIGGVT--ILQKGKSDLISDGEIAKSV 289
KR+ + + E D + + K+I + + + L+S +
Sbjct: 1678 GEKG-KRIRENYSAMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--- 1732
Query: 290 SIYGSPRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAG------SALLRK 343
P + A F ++KG AG +AL
Sbjct: 1733 ----QPA-------LTLMEKAAFEDL-KSKGLIPADAT-------FAGHSLGEYAALASL 1773
Query: 344 AASLAFKD-----KKRSTLTTDIIE--CLGRSLEDICPAC 376
A ++ + R + LGRS + A
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI-AI 1812
Score = 42.7 bits (100), Expect = 2e-04
Identities = 34/212 (16%), Positives = 61/212 (28%), Gaps = 93/212 (43%)
Query: 21 MLASSAVFR--RQQFLIR--------SLGGYS------DHIEPRRMQDIRSMSGTTFEAD 64
L A F + + LI SLG Y+ D MS E+
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD-----------VMS---IESL 1782
Query: 65 AENVMREITPVLDPSKHKGQAGKIAVIGGCREYTGAPY-FAAISALKIGADLSHVFCTKD 123
E V ++G ++AV E + Y AI+ ++ A S +
Sbjct: 1783 VEVV-----------FYRGMTMQVAVPRD--ELGRSNYGMIAINPGRVAASFSQ-----E 1824
Query: 124 AAPVIKSYSPELIVHPILEES--------YNISGLEDEERRCISSKILAEVDKWMERFDC 175
A + +V + + + YN+ +
Sbjct: 1825 AL--------QYVVERVGKRTGWLVEIVNYNVENQQ------------------------ 1852
Query: 176 LVVGPGLGRDPYLLECVSEIMKHARQSNVPIV 207
V G R L+ V+ ++ + + I+
Sbjct: 1853 YVAA-GDLRA---LDTVTNVLNFIKLQKIDII 1880
Score = 35.0 bits (80), Expect = 0.040
Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 65/204 (31%)
Query: 128 IKSYS--PELIVHPILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGP--GLG 183
+ +YS P + H LE + +S +A + E+F+ ++ P G
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVP---------TASFFIASQLQ--EQFNKILPEPTEGFA 49
Query: 184 RDPYLLECVSEIMKHARQSNVPIVIDGDGLFL--VTNSID-LVSGYPLAVLTPNVNEYKR 240
D E + + FL V++ ++ G VL + E++
Sbjct: 50 ADD---EPTTPAELVGK-------------FLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 241 ----------LVQKVLNCEVNDRDAP-----ELLQS--LAKQIGGVTILQKGKSDL---I 280
L K+L + D EL+++ A+ + +K S L +
Sbjct: 94 CYLEGNDIHALAAKLLQ----ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 281 SDGEIAKSVSIYGSPRRCGGQGDI 304
+G A+ V+I+G GQG+
Sbjct: 150 GEGN-AQLVAIFG------GQGNT 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 1e-08
Identities = 61/416 (14%), Positives = 114/416 (27%), Gaps = 156/416 (37%)
Query: 31 QQFLIRSLG-GYSDHIEPRRMQDI-RSMSGTTFEADAE------------NVMREITPV- 75
Q+F+ L Y + P + + SM + + NV R P
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-QPYL 138
Query: 76 --------LDPSK----H--KGQAGK-IAVIGGCREYTGAPYFA-AISALKIG------- 112
L P+K G +GK + C Y I L +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 113 -----ADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSK------ 161
L + + S + +L I ++ E RR + SK
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKL----------RIHSIQAELRRLLKSKPYENCL 247
Query: 162 -ILAEV-DKW-MERFD--C--LVVGPGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL- 213
+L V + F+ C L+ R + V++ + A +++ + L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILL----TTRF----KQVTDFLSAATTTHISLDHHSMTLT 299
Query: 214 ----------FLVTNSIDL----VSGYPLAV-----------------LTPNVNEYKRLV 242
+L DL ++ P + N ++ ++
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 243 QKVLNCEVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRRCGGQG 302
+ LN P + + ++ + S I P
Sbjct: 360 ESSLNVL-----EPAEYRKMFDRLS---VFPP-------------SAHI---PT------ 389
Query: 303 DILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKRSTLT 358
+LS L W + + + + + L + SL K K ST++
Sbjct: 390 ILLS------LIW---------FDVIKSDVMVVV-NKLHKY--SLVEKQPKESTIS 427
Score = 47.9 bits (113), Expect = 4e-06
Identities = 46/374 (12%), Positives = 104/374 (27%), Gaps = 137/374 (36%)
Query: 119 FCTKDAAPVIKSYSPELIVHPILEESYNISGLEDEERRCISSK----ILAEVD------- 167
+ KD V + + ++++ ++D + +S + I+ D
Sbjct: 16 YQYKDILSV---FEDAFV------DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 168 -------------------------KW-MERFDCLVVGPGLGRDPYL------------- 188
K+ M P + Y+
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 189 -------LECVSEIMKHARQ--SNVPIVIDGDG------LFL-VTNSIDLVSGYPLAV-- 230
L+ ++ + + ++IDG + L V S + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 231 LT-PNVNEYKRLVQKVLN---------CEVNDRDA--PELLQSLAKQIGGVTILQKGKSD 278
L N N + +++ + +D + + S+ ++ + + ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 279 LI-----SDGEIAKSVSIYGSPRRC--------GGQGDILSG------------------ 307
L+ + + + ++ C D LS
Sbjct: 247 LLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 308 -SVAVFLSWARAKGKATTSQM---NPTVLGCIAGSALLRKAASLA--FKDKKRSTLTTDI 361
++ L + + + ++ NP L IA +R + +K LTT I
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWKHVNCDKLTT-I 358
Query: 362 IECLGRSLEDICPA 375
IE SL + PA
Sbjct: 359 IE---SSLNVLEPA 369
Score = 32.5 bits (73), Expect = 0.27
Identities = 59/335 (17%), Positives = 95/335 (28%), Gaps = 126/335 (37%)
Query: 48 RRMQDIRSMSGTTFEADAENVMREITPVLDPSKHKGQAGKIAVIGGCREY-------TGA 100
R Q +S T + + L P + K K CR T
Sbjct: 273 RFKQVTDFLSAATTT---HISLDHHSMTLTPDEVKSLLLKYL---DCRPQDLPREVLTTN 326
Query: 101 PYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPILEESYNISGLE-DEERRC-- 157
P +I I + T D K + + + I+E S N+ LE E R+
Sbjct: 327 PRRLSI----IAESIRDGLATWDN---WKHVNCDKLTT-IIESSLNV--LEPAEYRKMFD 376
Query: 158 ----------ISSKILAEVDKW--MERFDCLVVGPGL------GRDP----------YL- 188
I + +L+ + W + + D +VV L + P YL
Sbjct: 377 RLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 189 --LECVSEIMKHAR---QSNVPIVIDGDGLFLVTNS------------------------ 219
++ +E H N+P D D L
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 220 ---IDL---------------VSGYPLAVL----------TPNVNEYKRLVQKVLN---- 247
+D SG L L N +Y+RLV +L+
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 248 CEVNDRDAPE--LLQ-SLAKQIGGV-----TILQK 274
E N + LL+ +L + + +Q+
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE PXL; 2.00A {Bacteroides
thetaiotaomicron} PDB: 3mbj_A*
Length = 291
Score = 45.3 bits (108), Expect = 1e-05
Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 37/185 (20%)
Query: 158 ISSKILAEVDKWME---RFDCLVVGPGLGRDPYL-----LECVSEIMKHARQSNVPIVID 209
++ ++ + +W + +FD + G YL ++ VS+ +K RQ + IV D
Sbjct: 60 LTDEMPKIIAEWKKLEVQFDAIYTG-------YLGSPRQIQIVSDFIKDFRQPDSLIVAD 112
Query: 210 ---GD-GLFLVTNSIDLVSGY----PLA-VLTPNVNEYKRLVQKVLNCEVNDRDAPELLQ 260
GD G +++V A V+TPN+ E L+ + + D + E L+
Sbjct: 113 PVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLLDEPYKADSTDEELKEYLR 172
Query: 261 SLAKQ------IGGVTILQKGKSDLI----SDGEIAKSVSIYGSPRRCGGQGDILSGSVA 310
L+ + I V + + + G V+ P G GD + +
Sbjct: 173 LLSDKGPQVVIITSVPVHDEPHKTSVYAYNRQGNRYWKVTCPYLPAHYPGTGDTFT---S 229
Query: 311 VFLSW 315
V
Sbjct: 230 VITGS 234
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis,
eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida
glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Length = 540
Score = 43.7 bits (103), Expect = 7e-05
Identities = 26/194 (13%), Positives = 55/194 (28%), Gaps = 42/194 (21%)
Query: 190 ECVSEIMKHARQSNVPIVID----GDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKV 245
E + ++ PIV D + + L++ + + N +E L +
Sbjct: 321 EMLKAAIRAYNDVKRPIVFDPVGYSATETRLLLNNKLLTFGQFSCIKGNSSEILGLAELN 380
Query: 246 LNC--------EVNDRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGSPRR 297
+++ + + +A + V + G+ D I+DG I S+
Sbjct: 381 KERMKGVDASSGISNELLIQATKIVAFKYKTVAVC-TGEFDFIADGTIEGKYSLSKGTNG 439
Query: 298 CG---------------------GQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIA 336
G L ++A + +A
Sbjct: 440 TSVEDIPCVAVEAGPIEIMGDITASGCSLGSTIACMI--------GGQPSEGNLFHAVVA 491
Query: 337 GSALLRKAASLAFK 350
G L + A +A +
Sbjct: 492 GVMLYKAAGKIASE 505
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 36.4 bits (85), Expect = 0.011
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 29/133 (21%)
Query: 140 ILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVG----PGLGRDPYLLECVSEI 195
ILE+ I E + ++ ME+ + + + GL +D Y ++I
Sbjct: 122 ILEQGPEID--NQEAAGF-----IKHFEQMMEKVEAVAISGSLPKGLNQDYY-----AQI 169
Query: 196 MKHARQSNVPIVID--GDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDR 253
++ + VP+++D G L V L + Y V+ PN++E +L+ + L+
Sbjct: 170 IERCQNKGVPVILDCSGATLQTV-----LENPYKPTVIKPNISELYQLLNQPLD------ 218
Query: 254 DAPELLQSLAKQI 266
++ E L+ Q
Sbjct: 219 ESLESLKQAVSQP 231
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION,
PSI-II, NYSGXRC, kinase, structural genomics, structure
initiative; HET: ATP; 1.60A {Listeria innocua} PDB:
3hic_A* 3jul_A* 3q1y_A
Length = 320
Score = 34.9 bits (81), Expect = 0.032
Identities = 15/110 (13%), Positives = 39/110 (35%), Gaps = 17/110 (15%)
Query: 161 KILAEVDKWMERFDCLVVG----PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLV 216
+L ++ K +++ D +V+ P + E+++ + + + D G +L
Sbjct: 122 NLLKQIAKKVKKEDMVVIAGSPPPHYTLSDF-----KELLRTVKATGAFLGCDNSGEYLN 176
Query: 217 TNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQI 266
V + PN +E ++ + N + + L +
Sbjct: 177 ----LAVEMGVDFI-KPNEDEVIAILDEKTN---SLEENIRTLAEKIPYL 218
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 34.1 bits (79), Expect = 0.067
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 24/132 (18%)
Query: 140 ILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVG----PGLGRDPYLLECVSEI 195
ILE +S +E L D+ +++ + + + GL D Y E+
Sbjct: 104 ILEAGPTVS--PEEISNF-----LENFDQLIKQAEIVTISGSLAKGLPSDFY-----QEL 151
Query: 196 MKHARQSNVPIVID--GDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDR 253
++ A V +++D GD L V L + ++ PN+ E + L+ + +
Sbjct: 152 VQKAHAQEVKVLLDTSGDSLRQV-----LQGPWKPYLIKPNLEELEGLLGQDFSEN-PLA 205
Query: 254 DAPELLQSLAKQ 265
L
Sbjct: 206 AVQTALTKPMFA 217
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 33.1 bits (76), Expect = 0.17
Identities = 18/136 (13%), Positives = 49/136 (36%), Gaps = 15/136 (11%)
Query: 156 RCISSKILAEVDKWMERFDCL-----VV-GPGLGRDPYLLECVSEIMKHARQSNVPIVI- 208
+ ++ L E ++++ L VV P G L +++ R ++P++I
Sbjct: 271 IEMPAEKLNEANRFLLEQFGLTTFFPVVESPINGVTTILDGDPEQLIAKGRGKHIPLIIG 330
Query: 209 --DGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQI 266
D + + +++ LV + E+ +++ ++
Sbjct: 331 FTDAECEIF------RRQFEQIDIVSKIKENPGILVPLSVLFSSAPDTVAEITKAMHEKY 384
Query: 267 GGVTILQKGKSDLISD 282
++ +G +L +D
Sbjct: 385 FKKSVDMEGYIELCTD 400
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase
(EC 2.7.1.56), struct genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga
maritima} SCOP: c.72.1.1
Length = 331
Score = 31.8 bits (73), Expect = 0.29
Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 20/116 (17%)
Query: 161 KILAEVDKWMERFDCLVVG----PGLGRDPYLLECVSEIMKHARQSNVPIVID--GDGLF 214
L + + DC+V+ PG+ +E+++ AR+ V + ++ L
Sbjct: 135 HFLRRYKMTLSKVDCVVISGSIPPGVNEGIC-----NELVRLARERGVFVFVEQTPRLLE 189
Query: 215 LVTNSIDLVSGYPLAVLTPNV-NEYKRLVQKVLNCEVNDRDAPELLQSLAKQIGGV 269
+ V+ P++ + + L D +L + LA++
Sbjct: 190 RI-----YEGPEFPNVVKPDLRGNHASFLGVDLK---TFDDYVKLAEKLAEKSQVS 237
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB:
3hyo_A* 3ibq_A*
Length = 282
Score = 31.7 bits (73), Expect = 0.30
Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 26/180 (14%)
Query: 158 ISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNV---PIVIDGDGLF 214
++ A + FD ++G +G L + ++ ++ S + P++ D L+
Sbjct: 60 WLPQVFAHWTRAQLHFDQALIGY-VG-SVALCQQITTYLEQQTLSLLVVDPVLGDLGQLY 117
Query: 215 L-VTNSID-----LVSGYPLA-VLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQIG 267
L+ A V+ PN E L + LQ+ + G
Sbjct: 118 QGFDQDYVAAMRQLI---QQADVILPNTTEAALLTGAPYQVTPDLEVILPALQAQL-KTG 173
Query: 268 GVTILQKG--KSDLISDGEIAKSVSIYGSPRRCG----GQGDILSGSVAVFLSWARAKGK 321
++ + Y RR G GD L+ +A L +G
Sbjct: 174 AHAVITDVQRADQIGCAWLDEAGHVQYCGARRLPGHYNGTGDTLAAVIAGLL----GRGY 229
>1se7_A HOT, homologue of the theta subunit of DNA polymerase III; E. coli
bacteriophage P1, homologue of theta, E. coli DNA
polymerase III; NMR {Enterobacteria phage P1} SCOP:
a.237.1.1 PDB: 2ido_B*
Length = 83
Score = 29.4 bits (65), Expect = 0.51
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 144 SYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD--PYLLECVSEIMKHARQ 201
+NI+ EER ++ + A + ER + V+ + R+ L E ++H RQ
Sbjct: 3 DWNIAAKSQEERDKVNVDLAASGVAYKERLNIPVIAEQVAREQPENLRTYFMERLRHYRQ 62
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 31.0 bits (71), Expect = 0.63
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 164 AEVDKWMERF------DCLVVG----PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL 213
E + E+ LV+ PG+ + ++++ A++ + ++D G
Sbjct: 116 DEFRQLEEQVLEIESGAILVISGSLPPGVKLEKL-----TQLISAAQKQGIRCIVDSSGE 170
Query: 214 FLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLN 247
L ++ + ++ PN E LV + L
Sbjct: 171 ALS----AALAIGNIELVKPNQKELSALVNRELT 200
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 30.2 bits (69), Expect = 0.96
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 168 KWMERFDCLVVG----PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLV 223
+E+ D LV+ + + Y + + A++ + +D G L +++
Sbjct: 121 TELEKGDVLVLAGSVPQAMPQTIY-----RSMTQIAKERGAFVAVDTSGEALH----EVL 171
Query: 224 SGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQ 265
+ P + PN +E LV K + + DA +Q L +
Sbjct: 172 AAKPS-FIKPNHHELSELVSKPIA---SIEDAIPHVQRLIGE 209
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 30.2 bits (69), Expect = 1.1
Identities = 17/112 (15%), Positives = 45/112 (40%), Gaps = 23/112 (20%)
Query: 164 AEVDKWMERF------DCLVVG----PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGL 213
+ ++ +++ D ++V + D Y ++I + Q+ +V+D +
Sbjct: 111 TQFEQLLQQIKNTTSEDIVIVAGSVPSSIPSDAY-----AQIAQITAQTGAKLVVDAEKE 165
Query: 214 FLVTNSIDLVSGYPLAVLTPNVNEYKRLVQKVLNCEVNDRDAPELLQSLAKQ 265
++ +PL + PN +E + + +N +D D + + L +
Sbjct: 166 LAE----SVLPYHPLFI-KPNKDELEVMFNTTVN---SDADVIKYGRLLVDK 209
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.2
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 10/26 (38%)
Query: 107 SALKIGADLSHVFCTKDAAP--VIKS 130
++LK+ AD D+AP IK+
Sbjct: 27 ASLKLYAD--------DSAPALAIKA 44
>1du2_A DNA polymerase III; alpha helix, transferase; HET: DNA; NMR
{Escherichia coli} SCOP: a.237.1.1 PDB: 2ae9_A* 2axd_S*
2xy8_B*
Length = 76
Score = 27.7 bits (61), Expect = 1.6
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 144 SYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRD--PYLLECVSEIMKHARQ 201
N++ L+ E ++ + A + ER++ V+ + R+ +L E + R
Sbjct: 2 LKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQPEHLRSWFRERLIAHRL 61
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 29.0 bits (66), Expect = 2.6
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 25/48 (52%)
Query: 195 IMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLV 242
I+KHA VTN P VN YKRLV
Sbjct: 278 IVKHAT-----------SFTAVTN--------------PTVNSYKRLV 300
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 27.9 bits (63), Expect = 5.8
Identities = 1/48 (2%), Positives = 3/48 (6%), Gaps = 25/48 (52%)
Query: 195 IMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLV 242
++ A
Sbjct: 263 LLAAAA-----------AAAAAAA--------------AAAAAAAAAA 285
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET:
ANP; 2.80A {Synechocystis SP}
Length = 473
Score = 27.9 bits (63), Expect = 6.0
Identities = 14/48 (29%), Positives = 15/48 (31%), Gaps = 25/48 (52%)
Query: 195 IMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLV 242
I+KHA L TN P N YKRLV
Sbjct: 304 ILKHAP-----------ALLAFTN--------------PTTNSYKRLV 326
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon,
hyperthermophIle, PGI family; 1.16A {Pyrobaculum
aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Length = 302
Score = 27.6 bits (60), Expect = 6.3
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 180 PGLGRDPYLLECVSEIMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVL-------T 232
E V ++ S + + G+ + + S LA + T
Sbjct: 233 TSPHIPKEHQERVKATVEIVGGSIYAVEMHPKGVLSFLRDVGIASVK-LAEIRGVNPLAT 291
Query: 233 PNVNEYKRLVQ 243
P ++ KR +Q
Sbjct: 292 PRIDALKRRLQ 302
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 27.9 bits (63), Expect = 6.4
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 25/48 (52%)
Query: 195 IMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLV 242
++KHA+ + + N P N YKRLV
Sbjct: 301 VIKHAK-----------AINALAN--------------PTTNSYKRLV 323
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 27.8 bits (62), Expect = 7.1
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 165 EVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHARQSNVPI 206
E W++ + ++ G+ R YL++ +++ AR+ V +
Sbjct: 12 ETRDWLQAIESVIREEGVERAQYLID---QLLAEARKGGVNV 50
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
phosphoserine, enzyme complex, enzyme-metal complex,
isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa}
SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A*
1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A*
3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Length = 463
Score = 27.6 bits (62), Expect = 7.5
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 185 DPYLLECVSEIMKHARQSNVPIVI--DGDG--LFLVTNSIDLVSGYPLAVL 231
DP E + +++ + N + + DGDG + +VTN+ ++ L +L
Sbjct: 216 DPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLML 266
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 26.9 bits (59), Expect = 7.7
Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 31/120 (25%)
Query: 239 KRLVQKVLNCEVN----DRDAPELLQSLAKQIGGVTILQKGKSDLISDGEIAKSVSIYGS 294
KRL VL C D P ++ +I + LI DG + K ++ S
Sbjct: 8 KRLAASVLKCGQKRLWLD---PNESSEISMANSRASIRK-----LIKDGLVMKRSTVIHS 59
Query: 295 PRRCGGQGDILSGSVAVFLSWARAKGKATTSQMNPTVLGCIAGSALLRKAASLAFKDKKR 354
R A + K G G+ R + + ++R
Sbjct: 60 RSRA----------------RAFLEAKRKGRHTGS---GKRKGTRNARMPTKVLWMRRQR 100
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A*
1htq_A*
Length = 486
Score = 27.6 bits (62), Expect = 8.2
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 25/48 (52%)
Query: 195 IMKHARQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTPNVNEYKRLV 242
++ HA L TN P VN YKRLV
Sbjct: 317 LLHHAP-----------SLLAFTN--------------PTVNSYKRLV 339
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone
prosthetic group; HET: MDO; 1.50A {Rhodobacter
sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A*
2o7f_A*
Length = 521
Score = 27.6 bits (62), Expect = 8.4
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 5 YGVSTGFASLGSVKNCMLASSAVFRRQQFLIRSLG 39
YG++TGF L + ++ V Q L+ L
Sbjct: 60 YGLTTGFGPLANRL---ISGENVRTLQANLVHHLA 91
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural
genomics, seattle structural genomics center for
infectious disease; 1.95A {Burkholderia thailandensis}
Length = 485
Score = 27.2 bits (61), Expect = 8.8
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 185 DPYLLECVSEIMKHARQSNVPIVI--DGDG--LFLVTNSIDLVSGYPLAVL 231
DP E + +++ + ++ I DGDG L +VT ++ +L
Sbjct: 238 DPAHPENLQDVIAKLKATDAEIGFAFDGDGDRLGVVTKDGQIIYPDRQLML 288
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 27.5 bits (62), Expect = 9.2
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 192 VSEIMKHARQSNVPIV 207
V I K A ++ V +V
Sbjct: 64 VVAICKLANEARVALV 79
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
phosphoglucose isomerase, substrate,
D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
mexicana mexicana} SCOP: c.80.1.2
Length = 605
Score = 27.3 bits (61), Expect = 9.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 54 RSMSGTTFEADAENVMREITPVLD 77
R+ S D ++VM ++ VL
Sbjct: 151 RNRSNRPIIVDGKDVMSDVNNVLA 174
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 305
Score = 27.3 bits (60), Expect = 9.6
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 140 ILEESYNISGLEDEERRCISSKILAEVDKWMERFDCLVVGPGLGRDPYLLECVSEIMKHA 199
L +N D + CIS + W+ D L++ G + V + +
Sbjct: 122 TLYRIFNNKSSVDLKTLCISPREHC----WVLYVDVLLLECGGNLFDAISIAVKAALFNT 177
Query: 200 RQSNVPIVIDGDGLFLVTNSIDLVSGYPLAVLTP 233
R V ++ D +G + S D L+V
Sbjct: 178 RIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENV 211
>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis,
5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis;
2.25A {Mycobacterium tuberculosis}
Length = 549
Score = 27.2 bits (61), Expect = 9.9
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 54 RSMSGTTFEADAENVMREITPVLD 77
R D ++V+ ++ VLD
Sbjct: 98 RLPRDAELVVDGQDVVTDVHAVLD 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,780,902
Number of extensions: 362913
Number of successful extensions: 959
Number of sequences better than 10.0: 1
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 56
Length of query: 376
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 281
Effective length of database: 4,049,298
Effective search space: 1137852738
Effective search space used: 1137852738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)