BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017157
(376 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q182L1|RECX_CLOD6 Regulatory protein RecX OS=Clostridium difficile (strain 630)
GN=recX PE=3 SV=1
Length = 212
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 23/180 (12%)
Query: 191 EEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITD 250
EE+K + + Y++A +N A+ +L+ + ++++KL+ + F ++IE VI
Sbjct: 48 EELKPILDDEMYIKA-------KNKALNILSHADQSEKKLKEKLSSE-FDENIIERVIDF 99
Query: 251 FQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDE 310
+S L+NDS+ A+ + + G RIKQ L+ KGI+++ +AV E D+
Sbjct: 100 LKSYNLVNDSVLAQKIVNTNVNLNKCGKNRIKQNLYNKGINRSTINEAV------SELDK 153
Query: 311 DQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKL 370
D E + M A K++ R + K+ +I L Y+GF++ + +L KL
Sbjct: 154 DTEFENAM---------YLAKKRYERVKKEDKKKIYQKISQHLSYKGFDYDIIKRVLNKL 204
>sp|A2RNY5|RECX_LACLM Regulatory protein RecX OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=recX PE=3 SV=1
Length = 269
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKF-PSHVIEAVITDFQSRGLINDSLYAESYSRSR 270
++LA+ ++ + T E+RK L + IE V++ LIND YAE++ +
Sbjct: 61 GKSLALYYISFKMRTGAEVRKYLLEHDINDTDQIEQVLSVLTENNLINDKSYAENFIEGK 120
Query: 271 WSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQA 330
S S GP +IKQ L KGIS + +N ++ S+E Q ID + A
Sbjct: 121 ISMGSSGPYQIKQKLLTKGISNDVLSETLNEIY----SEEKQ----------IDVAYKLA 166
Query: 331 SKQWLRSQGAPKETR--KSRIIHWLQYRGFNWCVTSFILKKLE 371
SK R+ G + K +II L +GF++ V+S L LE
Sbjct: 167 SK-LSRTYGTRLTLKQLKDKIIQNLMNKGFSYSVSSIALDSLE 208
>sp|Q02VU7|RECX_LACLS Regulatory protein RecX OS=Lactococcus lactis subsp. cremoris
(strain SK11) GN=recX PE=3 SV=1
Length = 269
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 214 NLAVKLLATRAFTAVEMRKKLNGKKF-PSHVIEAVITDFQSRGLINDSLYAESYSRSRWS 272
+LA+ ++ + T E+RK L + IE V++ LIND YAE++ + S
Sbjct: 63 SLALYYISFKMRTGAEVRKYLLEHDINDTDQIEQVLSVLTENNLINDKSYAENFIEGKIS 122
Query: 273 SASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASK 332
S GP +IKQ L KGIS +A+ ++ S+E Q ID + ASK
Sbjct: 123 MGSSGPYQIKQKLLTKGISNDVLSEALKEIY----SEEKQ----------IDVAYKLASK 168
Query: 333 QWLRSQGAPKETR--KSRIIHWLQYRGFNWCVTSFILKKLE 371
R+ G + K +II L +GF++ V+S L LE
Sbjct: 169 -LSRTYGTRLTLKQLKDKIIQNLMNKGFSYSVSSIALDSLE 208
>sp|Q1I6B8|RECX_PSEE4 Regulatory protein RecX OS=Pseudomonas entomophila (strain L48)
GN=recX PE=3 SV=1
Length = 155
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 18/152 (11%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +IE + GL++++ Y ES+ R R S+A
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAPDELIEPALDRLAEEGLLSEARYLESFIRYR-SNAG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWL 335
+GP RI++ L ++G+ + D +++ ES+ D ++L + R F Q
Sbjct: 74 YGPARIREELGQRGLDRGDIDQSLR------ESEVDWAARL---EEVWQRKFAGQRPQDP 124
Query: 336 RSQGAPKETRKSRIIHWLQYRGFNWCVTSFIL 367
RS+ ++TR +L YRGF+ + +L
Sbjct: 125 RSRA--QQTR------FLAYRGFSMEMIGRLL 148
>sp|Q47RS5|RECX_THEFY Regulatory protein RecX OS=Thermobifida fusca (strain YX) GN=recX
PE=3 SV=1
Length = 185
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A + ++LL T ++ L ++ P VIEAV+ F G+++D+++AE++ SR
Sbjct: 26 ARAICLRLLTRAPRTRAQLTDALRRREIPDEVIEAVLDRFGEVGIVDDAVFAEAWVDSRH 85
Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
+ R + L ++G+ + + AV DG S +E+ R V+
Sbjct: 86 AGRGLARRALAAELRQRGVDEDTVRAAV-----DGLSPAQEEATA--------RQLVR-- 130
Query: 332 KQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKK------LESQYPS 376
++ ++G P E R R++ L RG++ + ++++ +E +PS
Sbjct: 131 RRLAATRGKPTEVRVRRLMGMLARRGYSAGLAYRLVREELEAEGVEVDFPS 181
>sp|Q9CDN7|RECX_LACLA Regulatory protein RecX OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=recX PE=3 SV=1
Length = 270
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 28/186 (15%)
Query: 201 FYLQAAKARQDAE--------------NLAVKLLATRAFTAVEMRKKLNGKKFP-SHVIE 245
F+L K DA+ +LA+ ++ + T+ E+RK L+ + + I+
Sbjct: 37 FFLNVDKELDDADLEEIQSYDQFAQGKSLALYYISFKMRTSSEVRKYLSEHEIDNTDQID 96
Query: 246 AVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRD 305
VI LIND YAE++ + S S GP +IKQ L KGI +A++ ++
Sbjct: 97 EVINILTKNNLINDKAYAENFIEGKISMGSAGPYQIKQKLITKGIDPLIIDQALSNIY-- 154
Query: 306 GESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSF 365
D+E ++ ++ +L + ++ + Q + K +II L +GF + ++S
Sbjct: 155 -----DEEKQIDVAY----KLAEKTNRTY--GQRLTLKQLKDKIIQNLMNKGFTYSISSI 203
Query: 366 ILKKLE 371
L+ LE
Sbjct: 204 ALESLE 209
>sp|Q03Q74|RECX_LACBA Regulatory protein RecX OS=Lactobacillus brevis (strain ATCC 367 /
JCM 1170) GN=recX PE=3 SV=1
Length = 266
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 15/160 (9%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A N A+ L+ + T E+R KL + P+ I A + +S L++D+ YA SY R+
Sbjct: 61 AYNRALDYLSQQLRTEKEVRDKLADLEIPAETIAATLQRLRSLALVDDAHYAASYVRTMM 120
Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
+ GPR I+Q L KG+ + +A+ L + E+Q + +G + A+
Sbjct: 121 HTGDKGPRVIRQNLRHKGVLEQPIDEALTLY-----TTEEQLT-VGTAV---------AA 165
Query: 332 KQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLE 371
K R Q P T++ +I L RGF+ + + +L L+
Sbjct: 166 KLAKRYQRQPFGTQQQKIRQGLLTRGFDNDLATKMLATLD 205
>sp|Q87XY8|RECX_PSESM Regulatory protein RecX OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=recX PE=3 SV=2
Length = 155
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +IEA + GL+++S Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAPPELIEAALDRLVEEGLLSESRYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAV 299
+GP RI++ L ++G+ + D ++A+
Sbjct: 74 YGPARIREELNQRGLQRADVERAL 97
>sp|A4XWQ3|RECX_PSEMY Regulatory protein RecX OS=Pseudomonas mendocina (strain ymp)
GN=recX PE=3 SV=1
Length = 150
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 24/156 (15%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +I+ + GL++++ Y ES+ R + A
Sbjct: 12 AMDLLARREHGRVELTRKLRKRGAPDELIDGALDRLAEEGLLSEARYLESFVAYR-ARAG 70
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWL 335
+GP+RI++ L ++G+++ D +A+ RD D F Q + W
Sbjct: 71 YGPQRIREELGQRGLARGDIDQAL----RDSGID----------------WFEQLRETWQ 110
Query: 336 RSQGA--PKETR-KSRIIHWLQYRGFNWCVTSFILK 368
R P + R +++ +L YRG++ + +L+
Sbjct: 111 RKYAGRLPNDARERAQQGRFLAYRGYSLDMIGRLLR 146
>sp|B1JDA1|RECX_PSEPW Regulatory protein RecX OS=Pseudomonas putida (strain W619) GN=recX
PE=3 SV=1
Length = 156
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R R S+A
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGATDELIELALDRLAEEGLLSEARYLESFIRYR-SNAG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAV 299
+GP RI++ L ++G+++ D +A+
Sbjct: 74 YGPARIREELGQRGLNRGDVDQAL 97
>sp|P94965|RECX_MYCS2 Regulatory protein RecX OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=recX PE=3 SV=2
Length = 188
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A+N+ ++LL RA T E+ +L + +P V V+ GLI+D +AE + RSR
Sbjct: 31 AKNVCLRLLTVRARTRAELETQLTKRGYPDDVSARVLDRLTEVGLIDDEDFAEQWVRSRH 90
Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
+A G R + L KKG+ D + L D ++ + +L K +RL
Sbjct: 91 LNAGKGKRALAVELRKKGVD--DEVISSALADLDPAAERQRAEQLVRDKLRRERL----- 143
Query: 332 KQWLRSQGAPKETRK--SRIIHWLQYRGFNWCVTSFIL 367
G P+ K R++ L RG+N + ++
Sbjct: 144 ------DGTPENDVKVTRRLVGMLARRGYNQSMAYDVV 175
>sp|Q4KHC0|RECX_PSEF5 Regulatory protein RecX OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=recX PE=3 SV=1
Length = 155
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +IEA + GL+++S Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAPPEMIEAALDRLTEEGLLSESRYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRD 305
+GP RI++ L ++G+ ++D ++L R+
Sbjct: 74 YGPMRIREELGQRGLQRSD----IDLALRE 99
>sp|B0KT21|RECX_PSEPG Regulatory protein RecX OS=Pseudomonas putida (strain GB-1) GN=recX
PE=3 SV=1
Length = 156
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R R S +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGASDELIEPELDRLAEEGLLSEARYLESFIRYR-SGSG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSI-DRLFVQASKQW 334
+GP RI++ L ++G+++ D ++A+ ES+ D ++ H + R F Q
Sbjct: 74 YGPSRIREELGQRGLARADIEQALR------ESEVDWRERM----HDVWQRKFAGQRPQD 123
Query: 335 LRSQGAPKETRKSRIIHWLQYRGFNWCVTSFIL 367
RS+ ++TR +L YRGF + +L
Sbjct: 124 PRSRA--QQTR------FLAYRGFPMDMIGRLL 148
>sp|Q4ZWP2|RECX_PSEU2 Regulatory protein RecX OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=recX PE=3 SV=1
Length = 155
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +I+A + GL+++S Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAPPELIDAALDRLVEEGLLSESRYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVN 300
+GP RI++ L ++G+ + D ++A+
Sbjct: 74 YGPVRIREELGQRGLQRADIEQALR 98
>sp|Q48F95|RECX_PSE14 Regulatory protein RecX OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=recX PE=3 SV=1
Length = 155
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + P +I+A + GL+++S Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAPPELIDAALDRLVEEGLLSESRYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVN 300
+GP RI++ L ++G+ + D ++A+
Sbjct: 74 YGPVRIREELNQRGLQRADIEQALR 98
>sp|Q0TP38|RECX_CLOP1 Regulatory protein RecX OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=recX PE=3 SV=1
Length = 212
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
+N A++ + T E+R KL K F I+ I + L+ND YAE Y + R
Sbjct: 62 CKNSALRTVEKTYKTEKELRDKLTEKGFEEDTIKRAIEFLKEYNLLNDEKYAEMYIKDRL 121
Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
S G +IK AL +KG+S+ ++ + D E + D KL K++I
Sbjct: 122 R--SQGRNKIKYALIRKGVSEDILLDKLSNI--DTEDENDTAFKLAEKKYNI-------- 169
Query: 332 KQWLRSQGAPKETRKSRIIHWLQYRGFNW-CVTSFILKKLESQY 374
L+ + + K ++ +L +G+++ C S + + ++Y
Sbjct: 170 ---LKKKESDKYKLSQKLFRFLLSKGYDYDCCNSIVRRLTNNEY 210
>sp|A5W7V1|RECX_PSEP1 Regulatory protein RecX OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=recX PE=3 SV=1
Length = 156
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R R S +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGASDELIEPELDRLAEEGLLSEARYLESFIRYR-SGSG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVN 300
+GP RI++ L ++G+++ D +A+
Sbjct: 74 YGPARIREELCQRGLARADIDQALR 98
>sp|Q88ME3|RECX_PSEPK Regulatory protein RecX OS=Pseudomonas putida (strain KT2440)
GN=recX PE=3 SV=1
Length = 156
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R R S +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGASDELIEPELDRLAEEGLLSEARYLESFIRYR-SGSG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVN 300
+GP RI++ L ++G+++ D +A+
Sbjct: 74 YGPARIREELCQRGLARADIDQALR 98
>sp|B3E9Z0|RECX_GEOLS Regulatory protein RecX OS=Geobacter lovleyi (strain ATCC BAA-1151
/ DSM 17278 / SZ) GN=recX PE=3 SV=1
Length = 154
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A++LL R +T +R+KL K+F + + + G + D YAE + + S
Sbjct: 14 ALRLLTGRDYTCAALRRKLQQKRFAAEEAQQAVERLIREGYLQDQRYAERLVAAVRQNGS 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWL 335
+ R++Q L ++G+ + ++ V R+ +D D+ L ++H ++R + Q
Sbjct: 74 FTGYRLQQELRRRGVP----PELIDQVLRESPADGDE---LERARHLVERRYAGFDPQ-- 124
Query: 336 RSQGAPKETRKSRIIHWLQYRGF 358
A E + R+ +LQ RG+
Sbjct: 125 ----AADERQLRRVAGFLQRRGY 143
>sp|B3EMI1|RECX_CHLPB Regulatory protein RecX OS=Chlorobium phaeobacteroides (strain BS1)
GN=recX PE=3 SV=1
Length = 151
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A +LA++LL R + E+ KL +KF I+ + GLI+D +AE + SR
Sbjct: 9 AFDLAIRLLGEREHSRKEIITKLERRKFSEAAIDKTLERLDQLGLIDDRSFAEHFVGSRS 68
Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
G +++ LF+KGIS+T ++ + D +S S H +D A
Sbjct: 69 RKKPSGKYKLRYELFQKGISET----IIDEILSDYDS----------SAHCLD----AAM 110
Query: 332 KQWLRSQGAPKETRKSRIIHWLQYRGFN 359
K++ +G RK ++ +L RGF+
Sbjct: 111 KKFPFLKGDDHYKRK-KLYAFLANRGFD 137
>sp|Q5WVQ1|RECX_LEGPL Regulatory protein RecX OS=Legionella pneumophila (strain Lens)
GN=recX PE=3 SV=1
Length = 150
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A++LL+ R ++A+E+ KL K F H ++ + + + G +D Y ESY R+R
Sbjct: 8 ALRLLSRREYSAMELCDKLKQKGFNLHDVQNALNECKRLGYQSDERYVESYIRARIHQG- 66
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWL 335
+GP +I+Q L KGI +L+ +S L K + ++A ++
Sbjct: 67 YGPLKIRQELKNKGIDP-------DLI----------QSVLHQEKDNWVNYALRAWEKKF 109
Query: 336 RSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQY 374
+ Q + + +L YRGF+ V S + K+++S Y
Sbjct: 110 KRQDDFSYSEMQKQHRFLLYRGFDRDVISKVFKEVKSSY 148
>sp|P37862|RECX_PSEPU Regulatory protein RecX OS=Pseudomonas putida GN=recX PE=3 SV=2
Length = 142
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R R S +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGASDELIEPELDRLAEEGLLSEARYLESFIRYR-SGSG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVN 300
+GP RI++ L ++G+++ D ++A+
Sbjct: 74 YGPARIREELGQRGLARADIEQALR 98
>sp|Q8XJ38|RECX_CLOPE Regulatory protein RecX OS=Clostridium perfringens (strain 13 /
Type A) GN=recX PE=3 SV=1
Length = 212
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
+N A++ + T E+R KL K F I+ I + L+ND YAE Y + R
Sbjct: 62 CKNSALRTVEKTYKTEKELRDKLAEKGFEEDTIKRAIEFLKEYNLLNDEKYAEMYIKDRL 121
Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
S G +IK AL +KG+S+ ++ + D E + D KL K++I
Sbjct: 122 R--SQGRNKIKYALIRKGVSEDILLDKLSNI--DTEDENDTAFKLAEKKYNI-------- 169
Query: 332 KQWLRSQGAPKETRKSRIIHWLQYRGFNW-CVTSFILKKLESQY 374
L+ + + K ++ +L +G+++ C S + + ++Y
Sbjct: 170 ---LKKKESDKYKLSQKLFRFLLSKGYDYDCCNSIVRRLTNNEY 210
>sp|Q8CV64|RECX_OCEIH Regulatory protein RecX OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=recX PE=3
SV=1
Length = 272
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 23/186 (12%)
Query: 188 EVAEEM-KILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEA 246
E+ +EM IL+QKD A L + L+ R + E+ L K+ I
Sbjct: 49 ELEDEMISILEQKD-------TLHKAYTLTIHFLSYRMRSEKEVSDYLQKKEVDEEHIAE 101
Query: 247 VITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDG 306
+I + ++D +AE + RSR +S+S GP+ I+Q LF+KG+ + A+
Sbjct: 102 IIKRLKKEKWVDDQQFAEMFVRSRINSSSKGPKMIQQELFEKGVDGSKITSAL------- 154
Query: 307 ESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFI 366
++ + K +++L SK+ + R +I L +GF+ V S +
Sbjct: 155 -----EQYPVEEQKQKVEKLI---SKKLQSKSKDSHQKRIDQIKQNLMQKGFDSGVISMV 206
Query: 367 LKKLES 372
++++++
Sbjct: 207 IQQMDT 212
>sp|A1T7T4|RECX_MYCVP Regulatory protein RecX OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=recX PE=3 SV=1
Length = 184
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A L ++LL RA T E+ L + +P + AV+ GL++D +AE + RSR
Sbjct: 25 ARALCLRLLTARARTRAELEAALAKRGYPDDIAAAVLDRLTQVGLVDDEDFAEQWVRSRR 84
Query: 272 SSASWGPRRIKQALFKKGIS 291
+A G R + L KKG+
Sbjct: 85 LNAGKGKRALAAELRKKGVD 104
>sp|A7MJ39|RECX_CROS8 Regulatory protein RecX OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=recX PE=3 SV=1
Length = 165
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 36/157 (22%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPS-----------HVIEAVITDFQSRGLINDSLYAE 264
A+++LA R + E+R+KL G P IE VI + ++D+ +AE
Sbjct: 18 AMRILAMRDHSEQELRRKL-GAVLPGKNEEEQEQATPEDIEKVIAWCHEQHYLDDARFAE 76
Query: 265 SYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSID 324
Y SR +GP+RI+Q L +KGIS + A + F D E D +Q
Sbjct: 77 RYIASR-GRKGYGPQRIRQELQQKGIS----RNACDSAFADCEVDWEQ------------ 119
Query: 325 RLFVQASKQWLRSQGAPKE---TRKSRIIHWLQYRGF 358
QA Q R GAP K+++ +L YRG+
Sbjct: 120 ----QARDQAERKFGAPLPRTFPEKAKVQRFLLYRGY 152
>sp|Q0SRQ8|RECX_CLOPS Regulatory protein RecX OS=Clostridium perfringens (strain SM101 /
Type A) GN=recX PE=3 SV=1
Length = 212
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 23/186 (12%)
Query: 190 AEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVIT 249
EE+K + ++D +++ +N A++ + T E+R KL K F I+ I
Sbjct: 47 VEEIKEIVKEDEFIKC-------KNSALRTVEKTYKTEKELRDKLTEKGFEEDTIKRAIE 99
Query: 250 DFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESD 309
+ L+ND YAE Y + R S G +IK AL +KG+S+ ++ + D E +
Sbjct: 100 FLKEYNLLNDEKYAEMYIKDRLRSQ--GRNKIKYALIRKGVSEDILLDKLSNI--DSEDE 155
Query: 310 EDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNW-CVTSFILK 368
KL K++I L+ + + K ++ +L +G+N+ C S + +
Sbjct: 156 NYTAFKLAEKKYNI-----------LKKKESDKYKLSQKLFRFLLSKGYNYDCCNSIVRR 204
Query: 369 KLESQY 374
++Y
Sbjct: 205 LTNNEY 210
>sp|Q7VNS6|RECX_HAEDU Regulatory protein RecX OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=recX PE=3 SV=1
Length = 151
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A N + LL+ R ++ ++R KL K++ + IE I Q ND Y S+ R R
Sbjct: 6 AVNYLIYLLSKRDYSEYDLRNKLIQKQYDTDEIEHAIQQAQLNNWQNDERYCASFIRYR- 64
Query: 272 SSASWGPRRIKQALFKKGI 290
S GPRR+KQ L KGI
Sbjct: 65 SQQGIGPRRLKQELRLKGI 83
>sp|B0S177|RECX_FINM2 Regulatory protein RecX OS=Finegoldia magna (strain ATCC 29328)
GN=recX PE=3 SV=1
Length = 205
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSR 270
+A ++++ L+ + T E+ KL KKF + +I+ VIT ++ L++D YA+ + +
Sbjct: 59 EAFDISLNFLSYKLRTEKEIITKLKSKKFSTEIIDDVITKLKNLDLLDDYNYAKIFINDK 118
Query: 271 WSSASWGPRRIKQALFKKGISQ 292
+ ++ RRI L++KGI +
Sbjct: 119 INLTNYSKRRIINDLYQKGIDK 140
>sp|B1MD16|RECX_MYCA9 Regulatory protein RecX OS=Mycobacterium abscessus (strain ATCC
19977 / DSM 44196) GN=recX PE=3 SV=1
Length = 204
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 217 VKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASW 276
++LL +RA T E+ ++L + +P V E ++ + GL+ND+ +A + +SR + +
Sbjct: 54 LRLLTSRARTRAELTERLARRGYPDDVSERIMDRLATAGLVNDADFATQWVQSRHTYSGK 113
Query: 277 GPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLR 336
G R + L KG+S +A A+ + DGE++ + ++L K + L
Sbjct: 114 GKRALAAELRTKGVSAENAAAALAQI--DGEAERSRAAELVTKKLRSENL---------- 161
Query: 337 SQGAPKETRKSRIIHWLQYRGFNWCVTSFILK 368
G K R R++ L RG+ + ++K
Sbjct: 162 DDGGIKAAR--RLVAMLARRGYGQSMAYDVVK 191
>sp|A1WXK6|RECX_HALHL Regulatory protein RecX OS=Halorhodospira halophila (strain DSM 244
/ SL1) GN=recX PE=3 SV=1
Length = 161
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 204 QAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYA 263
+A A + + A++LLA R T E+ +KL + + V+ GL+++ +A
Sbjct: 3 EAGAASEAVRDAALRLLARREHTRRELAQKLARRGHDPGYVHPVLEALAEEGLLDEGRFA 62
Query: 264 ESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSI 323
E + RSR GP RI Q L ++G+ A ++ V D E D L ++
Sbjct: 63 EVFVRSRVERGQ-GPVRIAQELRQRGV----ADGVIDEVLEDAEVD-----WLAQARAVR 112
Query: 324 DRLFVQASKQWLRSQGAPKETRKS-RIIHWLQYRGFN 359
+R F G P + R++ R +LQ RGF
Sbjct: 113 ERRF---------GAGVPADRREALRQAQFLQRRGFT 140
>sp|B9DV29|RECX_STRU0 Regulatory protein RecX OS=Streptococcus uberis (strain ATCC
BAA-854 / 0140J) GN=recX PE=3 SV=1
Length = 258
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
+NLA+ ++ + T ++ L + +I+ +I + IND Y ES+ R
Sbjct: 58 GKNLALYYISFQVRTQKQVYDYLKKHDLENTIIQKIIEELIKENWINDQKYVESFLRQNM 117
Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLV 302
++ GP+ IKQ L +KGIS +KA++ V
Sbjct: 118 TNGDKGPQLIKQKLMQKGISDKIIEKAISEV 148
>sp|A5F9B6|RECX_VIBC3 Regulatory protein RecX OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=recX PE=3 SV=1
Length = 152
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 81/159 (50%), Gaps = 22/159 (13%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A++LL+ R + E+ +KL K P+ VI+ V+ G ++D+ YA S +R +
Sbjct: 12 ALQLLSRRDHSEYELHQKLALKGHPTEVIDEVVKYVLELGYLSDARYAASQAR-QIVHKG 70
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSID--RLFVQASKQ 333
+G +R++Q L +K +++ ++A +++ +ID L + + +
Sbjct: 71 YGEQRLRQQLKEKRVAEEVIEQA-------------------LAEQTIDWFELAKEVAHK 111
Query: 334 WLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLES 372
+S + + ++ ++ + +LQYRGFN+ + L+ ES
Sbjct: 112 KFKSGISHERSQYAKQVRYLQYRGFNFEQIRYALQASES 150
>sp|Q9KEC9|RECX_BACHD Regulatory protein RecX OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=recX PE=3
SV=1
Length = 266
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%)
Query: 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRS 269
Q NLA+ L+ R + E+R L K +IE V+ + L++D +AE++ ++
Sbjct: 64 QKTFNLALHYLSYRMRSVHEVRTYLKKKDREEPIIEHVLHRLTEQRLLDDHAFAEAFIQT 123
Query: 270 RWSSASWGPRRIKQALFKKGISQTDAKKAVN 300
+ ++ S GP ++KQ L +KG+S+ + A+
Sbjct: 124 KRATTSKGPLKLKQELAEKGVSEKTIEGALT 154
>sp|B2G8N1|RECX_LACRJ Regulatory protein RecX OS=Lactobacillus reuteri (strain JCM 1112)
GN=recX PE=3 SV=1
Length = 264
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 220 LATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPR 279
L+ + T ++ KKL P +E+++ + + LI+D YA SY R+ ++ GP
Sbjct: 69 LSYQMRTESDIVKKLKEIDTPEEFVESILKKLRGQQLIDDHAYAASYVRTMINTDLKGPG 128
Query: 280 RIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQG 339
I+Q L +KGI + D A+ + +++ ++K ++LF R +
Sbjct: 129 VIRQHLRQKGIGENDIDDALTQFTPEVQAE--------LAKKLAEKLF-------RRYRN 173
Query: 340 APKETRKSRIIHWLQYRGFNWCVTSFI 366
P+ R+ ++ L +GF+ V I
Sbjct: 174 QPERRREQKVQQGLMTKGFSSSVYEMI 200
>sp|A5VLA3|RECX_LACRD Regulatory protein RecX OS=Lactobacillus reuteri (strain DSM 20016)
GN=recX PE=3 SV=1
Length = 264
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 220 LATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPR 279
L+ + T ++ KKL P +E+++ + + LI+D YA SY R+ ++ GP
Sbjct: 69 LSYQMRTESDIVKKLKEIDTPEEFVESILKKLRGQQLIDDHAYAASYVRTMINTDLKGPG 128
Query: 280 RIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQG 339
I+Q L +KGI + D A+ + +++ ++K ++LF R +
Sbjct: 129 VIRQHLRQKGIGENDIDDALTQFTPEVQAE--------LAKKLAEKLF-------RRYRN 173
Query: 340 APKETRKSRIIHWLQYRGFNWCVTSFI 366
P+ R+ ++ L +GF+ V I
Sbjct: 174 QPERRREQKVQQGLMTKGFSSSVYEMI 200
>sp|Q9REV5|RECX_AMYMU Regulatory protein RecX OS=Amycolatopsis mediterranei (strain U-32)
GN=recX PE=3 SV=2
Length = 175
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRW 271
A+ + LLA RA T E+R+ L K F E ++ GL+ND+ +AE + +SR
Sbjct: 15 AKEICFDLLAVRARTQEELRQALRRKGFDEETSETLLGKLDRAGLVNDAEFAELWVKSRH 74
Query: 272 SSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQAS 331
++ + L +KG+ A +A V D+ES+ M++ +
Sbjct: 75 TTQGLSRTALMAELRRKGVDDEVAAQAAGEV--------DRESEEQMARELV-------- 118
Query: 332 KQWLRSQG-APKETRKSRIIHWLQYRGFNWCVTSFILKKLESQY 374
++ L S G ++T R++ +L +G+ + ++K+ +Y
Sbjct: 119 RKRLGSLGNVDEQTALRRLLGFLARKGYPQGLAYTVIKEELREY 162
>sp|C3KDG1|RECX_PSEFS Regulatory protein RecX OS=Pseudomonas fluorescens (strain SBW25)
GN=recX PE=3 SV=1
Length = 155
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 24/155 (15%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL+++S Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAEPEMIETALDRLTEEGLLSESRYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWL 335
+GP RI++ L ++G+ + D ++L R+ G+S + Q W
Sbjct: 74 YGPARIREELSQRGLQRAD----IDLALRE----------CGISWQA------QLEDTWR 113
Query: 336 R--SQGAPKETR-KSRIIHWLQYRGFNWCVTSFIL 367
R S P + R +++ +L YRGF+ + S +L
Sbjct: 114 RKFSGHLPIDARERAKQGRFLSYRGFSMEMISRLL 148
>sp|A6V1H3|RECX_PSEA7 Regulatory protein RecX OS=Pseudomonas aeruginosa (strain PA7)
GN=recX PE=3 SV=1
Length = 153
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R E+ +KL + +I+ + GL+++S Y ES+ SR +
Sbjct: 15 AMDLLARREHGRAELSRKLRQRGASPELIDPALDRLAEEGLLDESRYLESFIASR-ARGG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVN 300
GP RI++ L ++G+ + D ++A+N
Sbjct: 74 HGPLRIREELAQRGLPRADIERALN 98
>sp|Q49YR8|RECX_STAS1 Regulatory protein RecX OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=recX
PE=3 SV=1
Length = 272
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 190 AEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVIT 249
A +M+ +Q+ D Y QA N+A++ L+ R T E+ + L K+ VI +VI
Sbjct: 47 AADMEKIQKYDQYRQAV-------NVAIQFLSYRKRTDHEVIQHLQKKEISESVIASVID 99
Query: 250 DFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESD 309
+ LI+ YA S + + GP +Q L G+ QT +++ E++
Sbjct: 100 YCHEQRLIDHEDYANSLKNTMILTTDKGPGIFRQKLRDAGVEQT----IIDVYAERYENE 155
Query: 310 EDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKK 369
+ E ++ + + L+ + P RK ++ L +G+++ + ++ +
Sbjct: 156 QPMED------------IIKVANKILKQKKGPTVKRKEKLSQALMQKGYSFEIIKVVMDE 203
Query: 370 LESQYP 375
++ P
Sbjct: 204 MDFSQP 209
>sp|C3LS34|RECX_VIBCM Regulatory protein RecX OS=Vibrio cholerae serotype O1 (strain
M66-2) GN=recX PE=3 SV=1
Length = 152
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 81/159 (50%), Gaps = 22/159 (13%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A++LL+ R + E+ +KL K P+ VI+ V+ G ++D+ YA S +R +
Sbjct: 12 ALQLLSRRDHSEYELYQKLALKGHPAEVIDEVVKYVLELGYLSDARYAASQAR-QIVHKG 70
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSID--RLFVQASKQ 333
+G +R++Q L +K +++ ++A +++ +ID L + + +
Sbjct: 71 YGEQRLRQQLKEKRVAEEVIEQA-------------------LAEQTIDWFELAKEVAHK 111
Query: 334 WLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLES 372
+S + + ++ ++ + +LQYRGFN+ + L+ ES
Sbjct: 112 KFKSGISHERSQYAKQVRYLQYRGFNFEQIRYALQASES 150
>sp|Q56647|RECX_VIBCH Regulatory protein RecX OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=recX PE=3 SV=2
Length = 152
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 81/159 (50%), Gaps = 22/159 (13%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A++LL+ R + E+ +KL K P+ VI+ V+ G ++D+ YA S +R +
Sbjct: 12 ALQLLSRRDHSEYELYQKLALKGHPAEVIDEVVKYVLELGYLSDARYAASQAR-QIVHKG 70
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSID--RLFVQASKQ 333
+G +R++Q L +K +++ ++A +++ +ID L + + +
Sbjct: 71 YGEQRLRQQLKEKRVAEEVIEQA-------------------LAEQTIDWFELAKEVAHK 111
Query: 334 WLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLES 372
+S + + ++ ++ + +LQYRGFN+ + L+ ES
Sbjct: 112 KFKSGISHERSQYAKQVRYLQYRGFNFEQIRYALQASES 150
>sp|B7LW31|RECX_ESCF3 Regulatory protein RecX OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=recX PE=3 SV=1
Length = 166
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 36/157 (22%)
Query: 216 AVKLLATRAFTAVEMRKKLN----GKKFPSHVIEAVITDFQ-------SRGLINDSLYAE 264
AV++LA R + E+R+KL GK P I+A + D++ G ++DS +
Sbjct: 18 AVRILAVRDHSEQELRRKLAAPIMGKNGPEE-IDATVEDYERVIAWCHEHGYLDDSRFVA 76
Query: 265 SYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSID 324
+ SR S +GP RI+Q L +KGIS+ +KA M + ID
Sbjct: 77 RFIASR-SRKGYGPARIRQELNQKGISREATEKA-------------------MRECDID 116
Query: 325 RLFVQASKQWLRSQGAPKET---RKSRIIHWLQYRGF 358
+ A Q R G P T K +I +L YRG+
Sbjct: 117 WCAL-ARDQATRKYGEPLPTVFSEKVKIQRFLLYRGY 152
>sp|B2S4R0|RECX_TREPS Regulatory protein RecX OS=Treponema pallidum subsp. pallidum
(strain SS14) GN=recX PE=3 SV=1
Length = 164
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSR 270
+AE +AV+LLA +A ++ KL + F V+E+V + ++D+ +A ++ R+R
Sbjct: 21 EAECVAVRLLARSETSAQQLGFKLLKRGFEKRVVESVFPVLKRYSWLDDTRFARAWLRNR 80
Query: 271 WSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDED 311
S ++ L ++G+S DA+ A++L+F+ E DE+
Sbjct: 81 VDSRPASRAQLLGELKRRGVSHADAEGALDLLFQ--EQDEE 119
>sp|O83986|RECX_TREPA Regulatory protein RecX OS=Treponema pallidum (strain Nichols)
GN=recX PE=3 SV=1
Length = 164
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSR 270
+AE +AV+LLA +A ++ KL + F V+E+V + ++D+ +A ++ R+R
Sbjct: 21 EAECVAVRLLARSETSAQQLGFKLLKRGFEKRVVESVFPVLKRYSWLDDTRFARAWLRNR 80
Query: 271 WSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDED 311
S ++ L ++G+S DA+ A++L+F+ E DE+
Sbjct: 81 VDSRPASRAQLLGELKRRGVSHADAEGALDLLFQ--EQDEE 119
>sp|A0QIR5|RECX_MYCA1 Regulatory protein RecX OS=Mycobacterium avium (strain 104) GN=recX
PE=3 SV=1
Length = 173
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 210 QDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRS 269
+ A L ++LL RA T E+ +L + +P V AV+ + GLI+D+ +A+ + +S
Sbjct: 17 EQARALCLRLLTARARTRAELHGRLAKRGYPDDVSTAVLDRLAAVGLIDDADFAQQWVQS 76
Query: 270 RWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQ 329
R + A R + L KG+ D +V L D ++ D+ +L SK + L
Sbjct: 77 RRAHAGKSKRALAAELHTKGVD-NDVITSV-LAGIDAGAERDRAEQLVRSKLRRETL--- 131
Query: 330 ASKQWLRSQGAPKETRKSRIIHWLQYRGFN 359
+Q + TR R++ L RG++
Sbjct: 132 -------AQDDARVTR--RLVGMLARRGYS 152
>sp|P37861|RECX_PSEFL Regulatory protein RecX OS=Pseudomonas fluorescens GN=recX PE=3
SV=1
Length = 155
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 24/155 (15%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R VE+ +KL + +IE + GL++++ Y ES+ R + +
Sbjct: 15 AMDLLARREHGRVELTRKLRQRGAEPEMIETALDRLTEEGLLSEARYLESFVSYR-ARSG 73
Query: 276 WGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWL 335
+GP RI++ L ++G+ + D ++L R+ G+S S Q W
Sbjct: 74 YGPARIREELSQRGLQRAD----IDLALRE----------CGISWQS------QLEDTWR 113
Query: 336 RSQGA--PKETR-KSRIIHWLQYRGFNWCVTSFIL 367
R P + R +++ +L YRGF+ + S +L
Sbjct: 114 RKFAGHLPIDARERAKQGRFLSYRGFSMDMISRLL 148
>sp|P37860|RECX_PSEAE Regulatory protein RecX OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=recX PE=3
SV=2
Length = 153
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R E+ +KL + + +I+ + GL+++S Y ES+ SR S
Sbjct: 15 AMDLLARREHGRAELSRKLRQRGASAELIDPALDRLAEEGLLDESRYLESFIASRARSGH 74
Query: 276 WGPRRIKQALFKKGISQTDAKKAVN 300
GP RI++ L ++G+ + D ++A+
Sbjct: 75 -GPLRIREELAQRGLPRADIERALG 98
>sp|Q02R88|RECX_PSEAB Regulatory protein RecX OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=recX PE=3 SV=1
Length = 153
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R E+ +KL + + +I+ + GL+++S Y ES+ SR S
Sbjct: 15 AMDLLARREHGRAELSRKLRQRGASAELIDPALDRLAEEGLLDESRYLESFIASRARSGH 74
Query: 276 WGPRRIKQALFKKGISQTDAKKAVN 300
GP RI++ L ++G+ + D ++A+
Sbjct: 75 -GPLRIREELAQRGLPRADIERALG 98
>sp|B7V8D2|RECX_PSEA8 Regulatory protein RecX OS=Pseudomonas aeruginosa (strain LESB58)
GN=recX PE=3 SV=1
Length = 153
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS 275
A+ LLA R E+ +KL + + +I+ + GL+++S Y ES+ SR S
Sbjct: 15 AMDLLARREHGRAELSRKLRQRGASAELIDPALDRLAEEGLLDESRYLESFIASRARSGH 74
Query: 276 WGPRRIKQALFKKGISQTDAKKAVN 300
GP RI++ L ++G+ + D ++A+
Sbjct: 75 -GPLRIREELAQRGLPRADIERALG 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,388,794
Number of Sequences: 539616
Number of extensions: 5285258
Number of successful extensions: 13657
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 13376
Number of HSP's gapped (non-prelim): 356
length of query: 376
length of database: 191,569,459
effective HSP length: 119
effective length of query: 257
effective length of database: 127,355,155
effective search space: 32730274835
effective search space used: 32730274835
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)