Query 017157
Match_columns 376
No_of_seqs 160 out of 1127
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d5l_A Regulatory protein RECX 100.0 2.1E-34 7.2E-39 268.4 18.3 191 156-374 19-210 (221)
2 3e3v_A Regulatory protein RECX 100.0 6.8E-34 2.3E-38 257.1 17.5 156 203-373 11-166 (177)
3 3dfg_A Xcrecx, regulatory prot 100.0 4.7E-32 1.6E-36 241.7 16.3 149 206-372 13-161 (162)
4 3c1d_A Protein ORAA, regulator 100.0 2.8E-31 9.4E-36 235.7 17.1 146 208-371 3-158 (159)
5 3e3v_A Regulatory protein RECX 98.1 1.2E-05 4E-10 72.3 9.6 91 213-306 72-167 (177)
6 3d5l_A Regulatory protein RECX 98.0 9.1E-06 3.1E-10 75.3 7.6 90 213-305 115-209 (221)
7 3c1d_A Protein ORAA, regulator 98.0 1.7E-05 5.9E-10 69.8 8.3 83 215-302 71-157 (159)
8 3dfg_A Xcrecx, regulatory prot 97.9 2.9E-05 9.8E-10 68.7 8.2 75 223-301 80-158 (162)
9 4ae4_A Ubiquitin-associated pr 78.6 21 0.0007 29.9 10.5 94 226-370 7-100 (118)
10 3ff5_A PEX14P, peroxisomal bio 74.2 11 0.00037 27.8 6.6 42 209-250 9-53 (54)
11 2fu4_A Ferric uptake regulatio 73.3 7.2 0.00025 29.2 5.8 48 211-258 17-69 (83)
12 3l7w_A Putative uncharacterize 71.0 6.8 0.00023 31.4 5.5 47 213-259 11-58 (108)
13 2doa_A RNA polymerase II elong 68.5 6.4 0.00022 32.7 4.8 48 211-258 12-59 (104)
14 3f8b_A Transcriptional regulat 68.2 6.9 0.00024 31.9 5.0 48 212-259 13-65 (116)
15 3ri2_A Transcriptional regulat 67.2 22 0.00076 29.5 8.0 50 209-259 19-70 (123)
16 3hhh_A Transcriptional regulat 66.1 11 0.00038 30.9 5.8 47 213-259 15-64 (116)
17 4esb_A Transcriptional regulat 65.4 9.3 0.00032 31.2 5.2 47 213-259 11-60 (115)
18 4esf_A PADR-like transcription 64.9 8.6 0.00029 31.5 4.9 48 212-259 12-62 (117)
19 1xma_A Predicted transcription 64.8 7.1 0.00024 33.3 4.6 47 212-258 42-93 (145)
20 1y0u_A Arsenical resistance op 64.2 16 0.00055 28.0 6.2 44 212-259 32-75 (96)
21 2e5n_A RNA polymerase II elong 63.1 11 0.00039 30.9 5.2 47 211-257 13-59 (100)
22 3jth_A Transcription activator 61.6 14 0.00048 28.3 5.4 46 211-259 23-68 (98)
23 3cuo_A Uncharacterized HTH-typ 61.4 17 0.00057 27.4 5.8 45 212-259 25-70 (99)
24 3pqk_A Biofilm growth-associat 60.2 16 0.00055 28.2 5.6 46 211-259 23-68 (102)
25 2esh_A Conserved hypothetical 59.8 14 0.00048 29.9 5.3 48 212-259 14-67 (118)
26 4ets_A Ferric uptake regulatio 59.1 14 0.00048 31.9 5.5 62 199-260 21-88 (162)
27 2heo_A Z-DNA binding protein 1 58.6 21 0.00072 26.2 5.7 44 212-258 11-56 (67)
28 2dql_A PEX protein; circadian 58.1 11 0.00039 30.6 4.5 44 215-258 26-73 (115)
29 2oqg_A Possible transcriptiona 57.9 18 0.00062 28.1 5.6 45 212-259 22-66 (114)
30 3tgn_A ADC operon repressor AD 57.6 17 0.00058 29.1 5.5 42 214-258 41-82 (146)
31 1p6r_A Penicillinase repressor 56.6 25 0.00084 26.1 5.9 46 214-259 12-59 (82)
32 1qbj_A Protein (double-strande 56.6 33 0.0011 26.6 6.7 44 212-258 11-58 (81)
33 1mzb_A Ferric uptake regulatio 56.5 21 0.00073 29.5 6.0 51 209-259 16-71 (136)
34 2fe3_A Peroxide operon regulat 56.3 16 0.00054 30.7 5.2 51 209-259 20-74 (145)
35 2xig_A Ferric uptake regulatio 56.2 22 0.00075 30.1 6.1 51 209-259 25-79 (150)
36 2htj_A P fimbrial regulatory p 55.9 23 0.00079 26.4 5.6 41 215-258 4-45 (81)
37 2w84_A Peroxisomal membrane pr 55.8 24 0.00081 27.3 5.6 41 211-251 16-59 (70)
38 3elk_A Putative transcriptiona 55.4 6.7 0.00023 32.2 2.7 49 211-259 14-65 (117)
39 1r1u_A CZRA, repressor protein 54.6 30 0.001 27.0 6.4 45 212-259 27-71 (106)
40 1sfx_A Conserved hypothetical 53.5 34 0.0012 25.6 6.4 44 213-259 22-66 (109)
41 1yg2_A Gene activator APHA; vi 53.4 24 0.00083 30.4 6.1 45 214-258 5-54 (179)
42 1oyi_A Double-stranded RNA-bin 53.1 11 0.00039 29.7 3.5 50 206-258 12-61 (82)
43 3ff5_A PEX14P, peroxisomal bio 52.5 23 0.00078 26.0 4.8 22 280-301 32-53 (54)
44 2o03_A Probable zinc uptake re 52.4 26 0.00091 28.7 5.9 51 209-259 9-63 (131)
45 2f2e_A PA1607; transcription f 50.6 27 0.00091 29.3 5.8 43 215-260 28-70 (146)
46 4fp9_B Mterf domain-containing 50.3 1.8E+02 0.0063 28.0 15.4 30 340-369 143-172 (335)
47 2w57_A Ferric uptake regulatio 50.0 27 0.00091 29.6 5.7 51 209-259 15-70 (150)
48 3mwm_A ZUR, putative metal upt 50.0 33 0.0011 28.6 6.2 52 208-259 11-66 (139)
49 2kko_A Possible transcriptiona 49.9 21 0.00072 28.2 4.7 44 213-259 27-70 (108)
50 3c1l_A Putative antioxidant de 49.6 59 0.002 27.9 8.0 88 214-302 74-162 (188)
51 2pfx_A Uncharacterized peroxid 49.6 64 0.0022 27.8 8.2 89 213-302 76-165 (191)
52 1ub9_A Hypothetical protein PH 49.1 30 0.001 25.9 5.4 43 213-258 18-61 (100)
53 3bro_A Transcriptional regulat 48.8 31 0.001 27.3 5.6 44 212-258 35-81 (141)
54 1u2w_A CADC repressor, cadmium 47.2 94 0.0032 24.9 8.4 45 213-260 44-89 (122)
55 3f3x_A Transcriptional regulat 46.1 30 0.001 27.7 5.2 44 212-258 38-81 (144)
56 3eco_A MEPR; mutlidrug efflux 46.0 31 0.001 27.4 5.2 45 211-258 31-78 (139)
57 1z7u_A Hypothetical protein EF 45.9 26 0.00088 27.8 4.7 43 215-259 26-68 (112)
58 4dhx_B Enhancer of yellow 2 tr 45.8 55 0.0019 26.6 6.7 43 227-269 13-56 (101)
59 2d1h_A ST1889, 109AA long hypo 45.4 39 0.0013 25.4 5.5 40 217-259 28-68 (109)
60 3r0a_A Putative transcriptiona 45.3 42 0.0014 27.2 6.0 44 212-258 27-73 (123)
61 2k4b_A Transcriptional regulat 45.3 20 0.00068 28.7 3.9 42 217-258 41-84 (99)
62 2g9w_A Conserved hypothetical 44.8 45 0.0015 27.2 6.2 47 213-259 11-60 (138)
63 1sfu_A 34L protein; protein/Z- 44.7 26 0.00088 27.4 4.3 47 209-258 13-60 (75)
64 4a1g_A Mitotic checkpoint seri 44.2 1.2E+02 0.0041 26.3 9.0 52 242-295 49-101 (152)
65 1qgp_A Protein (double strande 44.2 49 0.0017 25.0 5.8 42 214-258 17-62 (77)
66 2hzt_A Putative HTH-type trans 44.0 30 0.001 27.2 4.8 43 215-259 18-60 (107)
67 2prr_A Alkylhydroperoxidase AH 43.3 73 0.0025 27.6 7.6 87 215-302 79-166 (197)
68 1tbx_A ORF F-93, hypothetical 43.2 46 0.0016 25.2 5.7 43 216-258 13-57 (99)
69 1sd4_A Penicillinase repressor 42.9 45 0.0015 26.2 5.7 44 216-259 15-60 (126)
70 2gxg_A 146AA long hypothetical 42.5 34 0.0012 27.2 5.0 43 213-258 39-81 (146)
71 2w84_A Peroxisomal membrane pr 42.5 20 0.00067 27.8 3.2 24 280-303 37-60 (70)
72 3mhs_B Protein SUS1; multi-pro 42.3 71 0.0024 25.7 6.8 44 227-270 9-53 (96)
73 3eyy_A Putative iron uptake re 42.0 22 0.00075 29.9 3.9 48 212-259 20-70 (145)
74 2y75_A HTH-type transcriptiona 41.6 37 0.0013 27.4 5.1 41 216-259 14-58 (129)
75 2fsw_A PG_0823 protein; alpha- 41.6 30 0.001 27.1 4.4 42 215-258 29-70 (107)
76 2xvc_A ESCRT-III, SSO0910; cel 41.5 37 0.0013 25.4 4.5 34 224-257 9-55 (59)
77 2zfw_A PEX; five alpha-helices 41.2 21 0.0007 30.8 3.6 46 214-259 47-96 (148)
78 2e1n_A PEX, period extender; c 41.1 25 0.00085 29.8 4.1 45 215-259 38-86 (138)
79 2zc2_A DNAD-like replication p 41.1 72 0.0025 23.8 6.4 49 223-272 16-67 (78)
80 2oyo_A Uncharacterized peroxid 40.9 62 0.0021 28.1 6.8 89 213-302 81-170 (196)
81 1jjr_A KU70, thyroid autoantig 40.7 10 0.00035 33.3 1.6 69 222-292 61-134 (151)
82 2jsc_A Transcriptional regulat 40.7 28 0.00094 28.0 4.1 44 213-259 23-66 (118)
83 3bpv_A Transcriptional regulat 40.5 50 0.0017 25.9 5.6 42 214-258 32-74 (138)
84 1r1t_A Transcriptional repress 39.7 62 0.0021 26.2 6.2 44 213-259 48-91 (122)
85 3bdd_A Regulatory protein MARR 39.7 98 0.0034 24.2 7.3 43 213-258 33-76 (142)
86 3f6o_A Probable transcriptiona 39.0 30 0.001 27.6 4.1 46 211-259 18-63 (118)
87 3oop_A LIN2960 protein; protei 38.8 45 0.0016 26.5 5.2 42 214-258 40-82 (143)
88 4aez_C MAD3, mitotic spindle c 38.8 1.7E+02 0.0058 27.0 9.6 52 242-295 98-150 (223)
89 3l9f_A Putative uncharacterize 38.5 17 0.00058 32.8 2.8 46 213-258 38-88 (204)
90 2fbh_A Transcriptional regulat 38.4 46 0.0016 26.3 5.2 42 214-258 40-83 (146)
91 4fp9_B Mterf domain-containing 37.9 1.6E+02 0.0054 28.5 9.7 51 232-301 51-101 (335)
92 1pdn_C Protein (PRD paired); p 37.0 1.4E+02 0.0047 22.8 9.6 81 215-299 25-124 (128)
93 2pg4_A Uncharacterized protein 36.7 46 0.0016 25.2 4.7 40 216-258 20-62 (95)
94 2qww_A Transcriptional regulat 36.6 51 0.0018 26.5 5.2 45 212-259 42-87 (154)
95 3ech_A MEXR, multidrug resista 36.1 40 0.0014 26.9 4.5 45 211-258 37-82 (142)
96 2hr3_A Probable transcriptiona 36.0 82 0.0028 25.0 6.3 44 212-258 36-81 (147)
97 3esl_A Checkpoint serine/threo 35.9 1.9E+02 0.0066 26.2 9.3 54 242-295 58-115 (202)
98 2lkp_A Transcriptional regulat 35.8 57 0.002 25.6 5.3 44 213-259 34-77 (119)
99 2p4w_A Transcriptional regulat 35.7 60 0.002 29.0 5.9 46 211-259 15-60 (202)
100 3nqo_A MARR-family transcripti 35.5 63 0.0022 27.6 5.9 46 210-258 40-88 (189)
101 2wvi_A Mitotic checkpoint seri 35.5 1.4E+02 0.0049 26.1 8.2 51 243-295 45-96 (164)
102 2nyx_A Probable transcriptiona 35.2 52 0.0018 27.3 5.2 43 213-258 47-90 (168)
103 3kp7_A Transcriptional regulat 35.2 42 0.0014 27.1 4.5 43 213-258 40-82 (151)
104 1lj9_A Transcriptional regulat 34.9 58 0.002 25.8 5.2 41 215-258 33-74 (144)
105 1ku9_A Hypothetical protein MJ 34.9 1.1E+02 0.0038 23.9 6.9 43 213-258 28-72 (152)
106 1u78_A TC3 transposase, transp 34.5 1.7E+02 0.0057 23.0 10.7 78 215-301 14-102 (141)
107 2qvo_A Uncharacterized protein 34.3 63 0.0022 24.5 5.1 30 225-257 31-60 (95)
108 2oo9_A E3 ubiquitin-protein li 34.1 27 0.00092 24.9 2.6 20 350-369 8-27 (46)
109 3m66_A Mterf3, mterf domain-co 33.8 2.7E+02 0.0091 25.1 13.6 27 240-267 72-98 (270)
110 3u2r_A Regulatory protein MARR 33.8 25 0.00085 29.2 2.9 44 212-258 47-93 (168)
111 3deu_A Transcriptional regulat 33.3 58 0.002 27.2 5.2 43 213-258 55-99 (166)
112 2rdp_A Putative transcriptiona 33.1 75 0.0026 25.3 5.7 42 214-258 45-87 (150)
113 3g3z_A NMB1585, transcriptiona 33.0 76 0.0026 25.2 5.7 43 213-258 33-76 (145)
114 2a61_A Transcriptional regulat 32.8 78 0.0027 25.0 5.7 43 213-258 35-78 (145)
115 2fa5_A Transcriptional regulat 31.4 1.4E+02 0.0049 24.0 7.2 44 213-259 51-95 (162)
116 3nrv_A Putative transcriptiona 30.8 86 0.0029 24.9 5.7 42 215-259 44-86 (148)
117 1s3j_A YUSO protein; structura 30.7 71 0.0024 25.6 5.2 42 214-258 40-82 (155)
118 4hbl_A Transcriptional regulat 30.4 65 0.0022 26.0 4.9 44 212-258 42-86 (149)
119 1yyv_A Putative transcriptiona 30.3 49 0.0017 27.3 4.1 44 214-259 38-81 (131)
120 2fbi_A Probable transcriptiona 30.2 64 0.0022 25.3 4.7 43 213-258 38-81 (142)
121 3k0l_A Repressor protein; heli 30.1 60 0.002 26.6 4.6 43 213-258 48-91 (162)
122 2nnn_A Probable transcriptiona 29.2 80 0.0027 24.6 5.1 42 214-258 41-83 (140)
123 3jw4_A Transcriptional regulat 29.2 39 0.0013 27.2 3.3 45 211-258 41-88 (148)
124 1jgs_A Multiple antibiotic res 29.2 98 0.0034 24.2 5.7 41 215-258 38-79 (138)
125 3cdh_A Transcriptional regulat 28.9 68 0.0023 25.8 4.7 43 213-258 45-88 (155)
126 1xmk_A Double-stranded RNA-spe 28.7 1.1E+02 0.0037 23.6 5.6 45 211-258 11-57 (79)
127 2jt1_A PEFI protein; solution 28.6 1.1E+02 0.0036 23.4 5.5 32 224-258 24-55 (77)
128 3bj6_A Transcriptional regulat 28.6 85 0.0029 25.0 5.3 43 213-258 42-85 (152)
129 1on2_A Transcriptional regulat 28.4 1.6E+02 0.0054 23.5 6.9 44 213-259 10-54 (142)
130 3hsr_A HTH-type transcriptiona 28.4 63 0.0021 25.8 4.4 43 213-258 38-81 (140)
131 2pex_A Transcriptional regulat 28.4 84 0.0029 25.2 5.2 41 215-258 51-92 (153)
132 3lgb_A DNA primase large subun 28.4 41 0.0014 30.6 3.5 34 223-256 119-152 (194)
133 3cjn_A Transcriptional regulat 28.1 83 0.0029 25.5 5.2 43 213-258 54-97 (162)
134 4ae4_A Ubiquitin-associated pr 28.1 80 0.0027 26.2 5.0 22 281-302 79-100 (118)
135 2keb_A DNA polymerase subunit 28.0 90 0.0031 25.6 5.1 47 222-269 23-71 (101)
136 1i1g_A Transcriptional regulat 28.0 1.1E+02 0.0039 24.4 6.0 41 215-258 8-49 (141)
137 2eth_A Transcriptional regulat 26.5 88 0.003 25.3 5.0 42 214-258 47-89 (154)
138 3f6v_A Possible transcriptiona 26.3 59 0.002 27.6 4.0 46 211-259 58-103 (151)
139 3e6m_A MARR family transcripti 26.3 78 0.0027 25.9 4.7 43 213-258 55-98 (161)
140 4b8x_A SCO5413, possible MARR- 26.2 1E+02 0.0035 25.1 5.4 41 215-258 39-82 (147)
141 1okr_A MECI, methicillin resis 25.8 1.2E+02 0.0042 23.4 5.6 43 216-258 15-59 (123)
142 1xd7_A YWNA; structural genomi 25.5 1.1E+02 0.0038 25.3 5.6 41 216-259 14-55 (145)
143 1xn7_A Hypothetical protein YH 24.7 1.2E+02 0.004 23.2 5.1 40 215-257 6-46 (78)
144 3df8_A Possible HXLR family tr 24.6 80 0.0027 25.0 4.3 47 213-261 29-77 (111)
145 3tqn_A Transcriptional regulat 24.6 1.9E+02 0.0065 22.8 6.6 45 211-258 13-64 (113)
146 2lnb_A Z-DNA-binding protein 1 24.3 2E+02 0.0069 22.7 6.3 45 211-258 19-65 (80)
147 2k02_A Ferrous iron transport 24.1 99 0.0034 24.3 4.6 41 215-258 6-47 (87)
148 2x4h_A Hypothetical protein SS 24.0 1.8E+02 0.006 23.1 6.3 34 223-259 30-63 (139)
149 3s2w_A Transcriptional regulat 23.6 1.3E+02 0.0044 24.4 5.5 41 215-258 54-95 (159)
150 1uly_A Hypothetical protein PH 23.5 1.5E+02 0.005 26.1 6.2 45 212-259 21-65 (192)
151 3fm5_A Transcriptional regulat 23.5 92 0.0031 24.9 4.6 45 212-259 40-86 (150)
152 2juj_A E3 ubiquitin-protein li 23.5 61 0.0021 24.0 3.0 21 349-369 10-30 (56)
153 3mva_O Transcription terminati 23.5 4.5E+02 0.015 24.7 10.1 66 220-301 44-109 (343)
154 3kp1_E D-ornithine aminomutase 23.5 3.3E+02 0.011 22.9 10.0 66 220-301 40-105 (121)
155 2frh_A SARA, staphylococcal ac 22.8 73 0.0025 25.4 3.8 43 213-258 39-84 (127)
156 3l9q_A DNA primase large subun 22.6 61 0.0021 29.5 3.5 34 223-256 118-151 (195)
157 4a5n_A Uncharacterized HTH-typ 22.6 1E+02 0.0035 25.7 4.7 72 214-299 29-100 (131)
158 2v9v_A Selenocysteine-specific 22.5 1.9E+02 0.0065 23.0 6.3 48 209-257 64-119 (135)
159 4fx0_A Probable transcriptiona 22.5 1.4E+02 0.0048 24.4 5.6 40 215-257 37-82 (148)
160 2h09_A Transcriptional regulat 22.4 2E+02 0.0068 23.3 6.5 47 209-258 38-85 (155)
161 1ylf_A RRF2 family protein; st 22.4 1.5E+02 0.0052 24.6 5.8 34 224-260 30-63 (149)
162 2k27_A Paired box protein PAX- 22.3 3E+02 0.01 22.5 7.6 38 216-257 34-71 (159)
163 2pn6_A ST1022, 150AA long hypo 22.2 1.9E+02 0.0065 23.4 6.3 42 214-258 6-48 (150)
164 1fx7_A Iron-dependent represso 21.9 1.3E+02 0.0045 26.6 5.7 43 214-259 12-56 (230)
165 2w25_A Probable transcriptiona 21.6 1.9E+02 0.0066 23.5 6.3 41 215-258 11-52 (150)
166 2dk5_A DNA-directed RNA polyme 21.5 1.2E+02 0.0041 23.7 4.7 34 222-258 34-67 (91)
167 3neu_A LIN1836 protein; struct 21.4 3.2E+02 0.011 21.9 12.3 90 210-302 16-120 (125)
168 3boq_A Transcriptional regulat 21.4 68 0.0023 25.9 3.3 44 212-258 48-93 (160)
169 4aik_A Transcriptional regulat 21.3 1.5E+02 0.0052 24.3 5.5 41 215-258 35-77 (151)
170 1eh2_A EPS15; calcium binding, 20.9 1.6E+02 0.0055 23.2 5.4 46 223-268 29-76 (106)
171 3hrs_A Metalloregulator SCAR; 20.4 3.6E+02 0.012 23.6 8.2 45 213-260 7-53 (214)
No 1
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=100.00 E-value=2.1e-34 Score=268.44 Aligned_cols=191 Identities=23% Similarity=0.291 Sum_probs=157.5
Q ss_pred ccccchhhhhhcc-cccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Q 017157 156 NILLDAAKQEFGE-EISCEHGLFEESEVFEEPQEVAEEMKILQQKDFYLQAAKARQDAENLAVKLLATRAFTAVEMRKKL 234 (376)
Q Consensus 156 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~A~~~AL~lLsrRdrS~~ELr~KL 234 (376)
||.+|+-..-..+ ++...+++.. ++|.+++.+.+ +....+..+|+++|+++|++|+||..||++||
T Consensus 19 ~I~ld~~~~f~v~~~~l~~~~L~k---g~el~~e~~~~----------i~~~~~~~~a~~~Al~~Ls~r~~S~~EL~~KL 85 (221)
T 3d5l_A 19 NIYLDGKYAFPVAESVLIQFRLMK---GTELDEKQIAA----------IATADQQAKAYSRMLDYLSYQMRTESDIVKKL 85 (221)
T ss_dssp EEEETTEEEEEEEHHHHHHTTCCT---TCEECHHHHHH----------HHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred EEEEcCCeeEEeeHHHHHHcCCcC---CCCCCHHHHHH----------HHHhHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 3778763333333 5556688864 48888777764 55566789999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHHHHHHHhhhcCCCChhHHHh
Q 017157 235 NGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQES 314 (376)
Q Consensus 235 ~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiIeeALee~~eeeeedEE~e~ 314 (376)
.++|+++++|+.||++|++.|||||.+||++|++++++.++|||++|+++|++|||+.++|++||+++.+ ++|
T Consensus 86 ~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~---~~e---- 158 (221)
T 3d5l_A 86 KEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDDALTQFTP---EVQ---- 158 (221)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHHHGGGCCH---HHH----
T ss_pred HhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHHHHHHHHHhCCH---HHH----
Confidence 9999999999999999999999999999999999998778999999999999999999999999998622 122
Q ss_pred hhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhhhhcC
Q 017157 315 KLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKLESQY 374 (376)
Q Consensus 315 a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~vL~eie~e~ 374 (376)
++.+...++|++.++...++.+.++|++++|+||||++++|..++++++.+.
T Consensus 159 --------~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~~~~~ 210 (221)
T 3d5l_A 159 --------AELAKKLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDEVVPQP 210 (221)
T ss_dssp --------HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC-----
T ss_pred --------HHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhccchh
Confidence 2345667788887766667788999999999999999999999999885543
No 2
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=100.00 E-value=6.8e-34 Score=257.09 Aligned_cols=156 Identities=26% Similarity=0.328 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHH
Q 017157 203 LQAAKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIK 282 (376)
Q Consensus 203 ~~~~~~~~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIr 282 (376)
+....+..+|+++|++||++|+||..||++||.++|+++++|+.||++|++.|||||.+||++|++++++.++|||++|+
T Consensus 11 i~~~~~~~~a~~~Al~~Ls~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~ 90 (177)
T 3e3v_A 11 IKLADDISKGYNAALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIK 90 (177)
T ss_dssp --CHHHHHHHHHHHHHHHHSSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHH
Confidence 55566799999999999999999999999999999999999999999999999999999999999999986689999999
Q ss_pred HHHHhCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHH
Q 017157 283 QALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCV 362 (376)
Q Consensus 283 qeLrqKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~ 362 (376)
++|++|||+.++|++||+++.+ ++| ++.+...++|++.+....++.+.++|+++||+||||++++
T Consensus 91 ~eL~~KGI~~~~I~~al~~~~~---~de------------~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~ 155 (177)
T 3e3v_A 91 LNLSKKGIDDNIAEDALILYTD---KLQ------------VEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDI 155 (177)
T ss_dssp HHHHTTTCCHHHHHHHHTTSCH---HHH------------HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHcCCCHHHHHHHHHhCCc---hhH------------HHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999987532 122 2345666788887766667788999999999999999999
Q ss_pred HHHHHHhhhhc
Q 017157 363 TSFILKKLESQ 373 (376)
Q Consensus 363 I~~vL~eie~e 373 (376)
|..+|++++.+
T Consensus 156 I~~vl~~l~~~ 166 (177)
T 3e3v_A 156 IDTIIQELDLI 166 (177)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHCcCC
Confidence 99999998644
No 3
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=99.98 E-value=4.7e-32 Score=241.70 Aligned_cols=149 Identities=19% Similarity=0.259 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHH
Q 017157 206 AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQAL 285 (376)
Q Consensus 206 ~~~~~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeL 285 (376)
..+..+|+++|++||++|+||+.||++||.++|+++++|+.||++|++.|||||.+||++|++++++ ++||+++|+++|
T Consensus 13 ~~~~~~a~~~Al~~Ls~r~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~-~~~G~~~I~~eL 91 (162)
T 3dfg_A 13 RFKEQTPVQRALGLLVHREHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRAS-SGYGPLHIRAEL 91 (162)
T ss_dssp ----CCHHHHHHHHHHHSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHT-TTCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHhhchhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-ccccHHHHHHHH
Confidence 4467889999999999999999999999999999999999999999999999999999999999987 799999999999
Q ss_pred HhCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHH
Q 017157 286 FKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSF 365 (376)
Q Consensus 286 rqKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~ 365 (376)
++|||+.++|+++|+++.+ +| . +.+...++|++.. ...++.+.++|++++|+||||++++|..
T Consensus 92 ~~KGI~~~~I~~al~~~~~----de-~-----------e~a~~l~~Kk~~~-~~~~~~~~k~K~~~~L~rrGF~~~~I~~ 154 (162)
T 3dfg_A 92 GTHGLDSDAVSAAMATFEG----DW-T-----------ENALDLIRRRFGE-DGPVDLAQRRKAADLLARRGFDGNSIRL 154 (162)
T ss_dssp HHTTCCHHHHHHHHTTCCS----CH-H-----------HHHHHHHHHHHCT-TCCCSHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHcCCCHHHHHHHHHhCcH----hH-H-----------HHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999998631 33 2 2345556777654 3345678999999999999999999999
Q ss_pred HHHhhhh
Q 017157 366 ILKKLES 372 (376)
Q Consensus 366 vL~eie~ 372 (376)
+|+..++
T Consensus 155 ~l~~~~~ 161 (162)
T 3dfg_A 155 ATRFDLE 161 (162)
T ss_dssp HTTC---
T ss_pred HHhcCcC
Confidence 9987543
No 4
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=99.97 E-value=2.8e-31 Score=235.71 Aligned_cols=146 Identities=27% Similarity=0.330 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHhcC-----C-----CCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCcc
Q 017157 208 ARQDAENLAVKLLATRAFTAVEMRKKLNGK-----K-----FPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWG 277 (376)
Q Consensus 208 ~~~~A~~~AL~lLsrRdrS~~ELr~KL~~K-----G-----~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~G 277 (376)
++.+|+++|++||++|+||..||++||.++ | +++++|+.||++|++.|||||.+||++|++++++ ++||
T Consensus 3 ~~~~a~~~Al~~Ls~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~-~g~G 81 (159)
T 3c1d_A 3 AYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSR-KGYG 81 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH-TTCC
T ss_pred hHHHHHHHHHHHhhcccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHh-CCcc
Confidence 578899999999999999999999999996 8 9999999999999999999999999999999997 8899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhhcCCCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCC
Q 017157 278 PRRIKQALFKKGISQTDAKKAVNLVFRDGESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRG 357 (376)
Q Consensus 278 prkIrqeLrqKGId~eiIeeALee~~eeeeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKG 357 (376)
+++|+++|++|||+.++|++||+++.. +| . +.+...++|++.. ...++.+.++|+++||+|||
T Consensus 82 ~~~I~~eL~~KGI~~~~i~~al~~~~~----d~-~-----------~~a~~l~~kk~~~-~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 82 PARIRQELNQKGISREATEKAMREADI----DW-A-----------ALARDQATRKYGE-PLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCC----CH-H-----------HHHHHHHHHHHCS-SCCCSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCH----hH-H-----------HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999998743 23 1 2345566777643 22356788999999999999
Q ss_pred CCHHHHHHHHHhhh
Q 017157 358 FNWCVTSFILKKLE 371 (376)
Q Consensus 358 Fs~d~I~~vL~eie 371 (376)
|++++|..++++++
T Consensus 145 F~~~~i~~~l~~~~ 158 (159)
T 3c1d_A 145 YLMEDIQDIWRNFA 158 (159)
T ss_dssp CCHHHHTTCC----
T ss_pred CCHHHHHHHHHhcc
Confidence 99999999998764
No 5
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=98.10 E-value=1.2e-05 Score=72.27 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhc-CC----ccHHHHHHHHHh
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSS-AS----WGPRRIKQALFK 287 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~-kg----~GprkIrqeLrq 287 (376)
..++-..+....+|+..|++.|.+||+++++|+.+|+.+.+. |...-|...++.++.. +. .-.+++.+.|.+
T Consensus 72 ~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~~---de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~r 148 (177)
T 3e3v_A 72 ESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALILYTDK---LQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLT 148 (177)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTTSCHH---HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHhCCch---hHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Confidence 334444445557999999999999999999999999765221 2234566666665542 11 125688999999
Q ss_pred CCCCHHHHHHHHHhhhcCC
Q 017157 288 KGISQTDAKKAVNLVFRDG 306 (376)
Q Consensus 288 KGId~eiIeeALee~~eee 306 (376)
|||+.++|..||.++..+.
T Consensus 149 rGF~~~~I~~vl~~l~~~~ 167 (177)
T 3e3v_A 149 KGFSYDIIDTIIQELDLIF 167 (177)
T ss_dssp TTCCHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHCcCCC
Confidence 9999999999999986544
No 6
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=98.02 E-value=9.1e-06 Score=75.32 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhc-CCc----cHHHHHHHHHh
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSS-ASW----GPRRIKQALFK 287 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~-kg~----GprkIrqeLrq 287 (376)
..++-..+..+.+|+..|++.|.+||+++++|+.+|+.+.+. +...-|...++.++.. .+. -.+++.+.|.+
T Consensus 115 ~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~~---~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~r 191 (221)
T 3d5l_A 115 ASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDDALTQFTPE---VQAELAKKLALKLFRRYRNQPERRREQKVQQGLTT 191 (221)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHHHGGGCCHH---HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHcCCCHHHHHHHHHhCCHH---HHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHh
Confidence 344444555578999999999999999999999999876221 2234455666666542 122 26799999999
Q ss_pred CCCCHHHHHHHHHhhhcC
Q 017157 288 KGISQTDAKKAVNLVFRD 305 (376)
Q Consensus 288 KGId~eiIeeALee~~ee 305 (376)
||++.++|..++.++..+
T Consensus 192 rGFs~~~I~~vl~~~~~~ 209 (221)
T 3d5l_A 192 KGFSSSVYEMIKDEVVPQ 209 (221)
T ss_dssp TTCCHHHHHHHTTC----
T ss_pred CCCCHHHHHHHHHhccch
Confidence 999999999999887543
No 7
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=97.99 E-value=1.7e-05 Score=69.78 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=62.7
Q ss_pred HHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCC----ccHHHHHHHHHhCCC
Q 017157 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSAS----WGPRRIKQALFKKGI 290 (376)
Q Consensus 215 ~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg----~GprkIrqeLrqKGI 290 (376)
++-..+. +-+|+..|+++|.+||+++++|+.+|+.+.. |...-|...++.++.... .-.+++.+.|..|||
T Consensus 71 ~v~~~~~-~g~G~~~I~~eL~~KGI~~~~i~~al~~~~~----d~~~~a~~l~~kk~~~~~~~~~~~~~K~~~~L~rrGF 145 (159)
T 3c1d_A 71 FIASRSR-KGYGPARIRQELNQKGISREATEKAMREADI----DWAALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGY 145 (159)
T ss_dssp HHHHHHH-TTCCHHHHHHHHHHTTCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHCSSCCCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHh-CCccHHHHHHHHHHcCCCHHHHHHHHHHcCH----hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3333443 4599999999999999999999999998732 566677777777764211 136789999999999
Q ss_pred CHHHHHHHHHhh
Q 017157 291 SQTDAKKAVNLV 302 (376)
Q Consensus 291 d~eiIeeALee~ 302 (376)
+.++|..++.++
T Consensus 146 ~~~~i~~~l~~~ 157 (159)
T 3c1d_A 146 LMEDIQDIWRNF 157 (159)
T ss_dssp CHHHHTTCC---
T ss_pred CHHHHHHHHHhc
Confidence 999999988765
No 8
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=97.90 E-value=2.9e-05 Score=68.70 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=61.2
Q ss_pred cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcC-C---ccHHHHHHHHHhCCCCHHHHHHH
Q 017157 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSA-S---WGPRRIKQALFKKGISQTDAKKA 298 (376)
Q Consensus 223 RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~k-g---~GprkIrqeLrqKGId~eiIeeA 298 (376)
+.+|+..|++.|.+||++.++|+.+|+.+. .|...-|...++.++... . .-.+++.+.|.+|||+.++|..+
T Consensus 80 ~~~G~~~I~~eL~~KGI~~~~I~~al~~~~----~de~e~a~~l~~Kk~~~~~~~~~~~k~K~~~~L~rrGF~~~~I~~~ 155 (162)
T 3dfg_A 80 SGYGPLHIRAELGTHGLDSDAVSAAMATFE----GDWTENALDLIRRRFGEDGPVDLAQRRKAADLLARRGFDGNSIRLA 155 (162)
T ss_dssp TTCCHHHHHHHHHHTTCCHHHHHHHHTTCC----SCHHHHHHHHHHHHHCTTCCCSHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCHHHHHHHHHhCc----HhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 579999999999999999999999999873 255667777777766421 1 23568889999999999999999
Q ss_pred HHh
Q 017157 299 VNL 301 (376)
Q Consensus 299 Lee 301 (376)
|.+
T Consensus 156 l~~ 158 (162)
T 3dfg_A 156 TRF 158 (162)
T ss_dssp TTC
T ss_pred Hhc
Confidence 875
No 9
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=78.63 E-value=21 Score=29.88 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=64.9
Q ss_pred CHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 017157 226 TAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNLVFRD 305 (376)
Q Consensus 226 S~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiIeeALee~~ee 305 (376)
+.+++-..|...||+...+..+|... |- |..-|..|+-.+. .|-..|++...|+.+++.. ..
T Consensus 7 ~e~~~v~~l~~MGFp~~~~~kAl~~~---g~--~~e~amewL~~h~------------~L~d~~~d~~~~e~~l~~~-~~ 68 (118)
T 4ae4_A 7 SERQCVETVVNMGYSYECVLRAMKAA---GA--NIEQILDYLFAHG------------QLCEKGFDPLLVEEALEMH-QC 68 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH---CS--CHHHHHHHHHHHH------------HHHHTTCCHHHHHHHHHHC-SS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH---Cc--CHHHHHHHHHHhc------------hhcccCCChhhhHHHHHhc-cC
Confidence 46788899999999999999988776 75 4555666665553 3788899999999888652 11
Q ss_pred CCChhHHHhhhccchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 017157 306 GESDEDQESKLGMSKHSIDRLFVQASKQWLRSQGAPKETRKSRIIHWLQYRGFNWCVTSFILKKL 370 (376)
Q Consensus 306 eeedEE~e~a~~Lak~~le~Ll~~AeKk~~R~~~~~~~k~rqKlir~L~RKGFs~d~I~~vL~ei 370 (376)
.+ . +.+- -...+..|.-=||+.+.|+.+|...
T Consensus 69 ---~~-~-------------------~~~~----------~~~~v~~L~eMGF~~~~a~~AL~~~ 100 (118)
T 4ae4_A 69 ---SE-E-------------------KMME----------FLQLMSKFKEMGFELKDIKEVLLLH 100 (118)
T ss_dssp ---CH-H-------------------HHHH----------HHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ---Cc-c-------------------cccc----------CHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 11 0 0000 1245777788888888888888764
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=74.22 E-value=11 Score=27.79 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHh---cccCHHHHHHHHhcCCCCHHHHHHHHHH
Q 017157 209 RQDAENLAVKLLAT---RAFTAVEMRKKLNGKKFPSHVIEAVITD 250 (376)
Q Consensus 209 ~~~A~~~AL~lLsr---RdrS~~ELr~KL~~KG~sediIe~VLe~ 250 (376)
..+..+.|+++|.. +.-+...=+..|+.||+++++|+.+|.+
T Consensus 9 Re~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 9 REPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 44567788888875 6667778888999999999999999976
No 11
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=73.31 E-value=7.2 Score=29.16 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhc---ccCHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCcc
Q 017157 211 DAENLAVKLLATR---AFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 211 ~A~~~AL~lLsrR---drS~~ELr~KL~~K--G~sediIe~VLe~L~e~GyLD 258 (376)
..+...+.+|... ..|..||.+.|.++ +++...|-..|..|.+.|+|.
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 3456678888763 58999999999877 789999999999999999984
No 12
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=71.03 E-value=6.8 Score=31.35 Aligned_cols=47 Identities=6% Similarity=0.230 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGK-KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~K-G~sediIe~VLe~L~e~GyLDD 259 (376)
.-..|.+|+..+.+..+|.+.|.+. ++++..|-.+|.+|++.|||.-
T Consensus 11 ~~~IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~ 58 (108)
T 3l7w_A 11 EYLILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLST 58 (108)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEE
Confidence 4467889999999999999999764 7899999999999999999953
No 13
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=68.52 E-value=6.4 Score=32.67 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 211 ~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..+.+.+++|+.+.|+.-||..+|.+.|+++.....+-.-|.+-..++
T Consensus 12 plReRvIHLLALkpykk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~ 59 (104)
T 2doa_A 12 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMS 59 (104)
T ss_dssp CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEEC
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 357889999999999999999999999999877666666666666663
No 14
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=68.22 E-value=6.9 Score=31.89 Aligned_cols=48 Identities=8% Similarity=0.214 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLATRAFTAVEMRKKLNG-----KKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsrRdrS~~ELr~KL~~-----KG~sediIe~VLe~L~e~GyLDD 259 (376)
..-..|.+|+..+.+-++|.+.|.+ .++++..|-.+|.+|++.|||.-
T Consensus 13 l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~ 65 (116)
T 3f8b_A 13 TNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISS 65 (116)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3445789999999999999999975 37899999999999999999963
No 15
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=67.17 E-value=22 Score=29.45 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCccH
Q 017157 209 RQDAENLAVKLLATRAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 209 ~~~A~~~AL~lLsrRdrS~~ELr~KL~~K--G~sediIe~VLe~L~e~GyLDD 259 (376)
.-...-..|.+|+ .+.+-++|.+.|.+. ++++..|-.+|.+|++.|||.-
T Consensus 19 ~g~l~~~IL~lL~-~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~ 70 (123)
T 3ri2_A 19 RGTLVMLVLSQLR-EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLAS 70 (123)
T ss_dssp HHHHHHHHHHHTT-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred hCcHHHHHHHHHc-CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3445667889999 999999999999886 7789999999999999999953
No 16
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=66.07 E-value=11 Score=30.86 Aligned_cols=47 Identities=13% Similarity=0.257 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGK---KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~K---G~sediIe~VLe~L~e~GyLDD 259 (376)
.-..|.+|+..+.+-++|.+.|.+. ++++..|-.+|.+|++.|||.-
T Consensus 15 ~~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~ 64 (116)
T 3hhh_A 15 EGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIA 64 (116)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEE
Confidence 4467899999999999999999864 4689999999999999999953
No 17
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=65.40 E-value=9.3 Score=31.18 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGK---KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~K---G~sediIe~VLe~L~e~GyLDD 259 (376)
.-..|.+|+..+.+-++|.+.|.+. .+++..|-.+|.+|++.|||.-
T Consensus 11 ~~~IL~~L~~~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~ 60 (115)
T 4esb_A 11 EGCILYIISQEEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEG 60 (115)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEE
Confidence 3457889999999999999999864 4689999999999999999953
No 18
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=64.89 E-value=8.6 Score=31.54 Aligned_cols=48 Identities=15% Similarity=0.302 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLATRAFTAVEMRKKLNGK---KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsrRdrS~~ELr~KL~~K---G~sediIe~VLe~L~e~GyLDD 259 (376)
..-..|.+|+..+.+-++|.+.|.+. ++++..|-.+|.+|++.|||.-
T Consensus 12 l~~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~ 62 (117)
T 4esf_A 12 LEGCVLEIISRRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNI 62 (117)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEE
Confidence 34567889999999999999999765 5689999999999999999964
No 19
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=64.77 E-value=7.1 Score=33.31 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCcc
Q 017157 212 AENLAVKLLATRAFTAVEMRKKLNGK-----KFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 212 A~~~AL~lLsrRdrS~~ELr~KL~~K-----G~sediIe~VLe~L~e~GyLD 258 (376)
..-..|.+|...+.+..+|.+.|.+. ++++..|-.+|.+|++.|||.
T Consensus 42 ~~~~IL~~L~~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~ 93 (145)
T 1xma_A 42 VDTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIK 93 (145)
T ss_dssp HHHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEE
Confidence 45667888988899999999999754 699999999999999999995
No 20
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=64.23 E-value=16 Score=28.01 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
.....+.+| ....|..+|.+.| |++...|...|..|.+.|+|.-
T Consensus 32 ~r~~Il~~L-~~~~~~~eLa~~l---~is~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 32 VRRKILRML-DKGRSEEEIMQTL---SLSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH-cCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEE
Confidence 345677888 7889999999998 7999999999999999999964
No 21
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.12 E-value=11 Score=30.94 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Q 017157 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (376)
Q Consensus 211 ~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyL 257 (376)
..+.+.+++|+.+.|+.-||..+|.+.|+++.....+-.-|.+-+.+
T Consensus 13 plReRvIHLLALkPykkpEL~~RL~kdGl~~~d~~~l~~iL~eVa~~ 59 (100)
T 2e5n_A 13 PYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANL 59 (100)
T ss_dssp CHHHHHHHHHHHSCBCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEE
T ss_pred cHHHHHHHHHHcCCCCcHHHHHHHHHccCCHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999999999976655555555444444
No 22
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=61.56 E-value=14 Score=28.27 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 211 ~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
..+-..+.+|.....|..||.+.| |++...|-..|..|.+.|+|.-
T Consensus 23 ~~r~~Il~~L~~~~~~~~ela~~l---~is~~tvs~~L~~L~~~Glv~~ 68 (98)
T 3jth_A 23 ERRLQILCMLHNQELSVGELCAKL---QLSQSALSQHLAWLRRDGLVTT 68 (98)
T ss_dssp HHHHHHHHHTTTSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEE
Confidence 335567888888889999999999 8999999999999999999963
No 23
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=61.39 E-value=17 Score=27.39 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhc-ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLATR-AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsrR-drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
.....+.+|... ..|..+|.+.| |++...|...|..|.+.|+|.-
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l---~is~~tvs~~l~~L~~~glv~~ 70 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRIT---GLSASATSQHLARMRDEGLIDS 70 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHH---CCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEE
Confidence 345677777766 78999999999 7999999999999999999953
No 24
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=60.17 E-value=16 Score=28.23 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 211 ~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
..+-..+.+|.....|..||.+.| |++...|-..|..|.+.|+|.-
T Consensus 23 ~~r~~Il~~L~~~~~~~~ela~~l---~is~~tvs~~L~~L~~~Glv~~ 68 (102)
T 3pqk_A 23 PVRLMLVCTLVEGEFSVGELEQQI---GIGQPTLSQQLGVLRESGIVET 68 (102)
T ss_dssp HHHHHHHHHHHTCCBCHHHHHHHH---TCCTTHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEE
Confidence 345567888888899999999999 7999999999999999999964
No 25
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=59.75 E-value=14 Score=29.87 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHhcCC-----CCH-HHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLATRAFTAVEMRKKLNGKK-----FPS-HVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsrRdrS~~ELr~KL~~KG-----~se-diIe~VLe~L~e~GyLDD 259 (376)
..-..|.+|+..+.+..+|.+.|...| +++ ..|-.+|.+|++.|||.-
T Consensus 14 ~~~~IL~~L~~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~ 67 (118)
T 2esh_A 14 LASTILLLVAEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLST 67 (118)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEE
Confidence 445678889889999999999998654 788 899999999999999953
No 26
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=59.14 E-value=14 Score=31.90 Aligned_cols=62 Identities=8% Similarity=0.114 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cccCHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCccHH
Q 017157 199 KDFYLQAAKARQDAENLAVKLLAT--RAFTAVEMRKKLNGK----KFPSHVIEAVITDFQSRGLINDS 260 (376)
Q Consensus 199 ~~~~~~~~~~~~~A~~~AL~lLsr--RdrS~~ELr~KL~~K----G~sediIe~VLe~L~e~GyLDD~ 260 (376)
.+...+...-....+...+.+|.. ...|..||.+.|+++ +++...|-++|+.|.+.|+|.-.
T Consensus 21 ~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 21 KKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 334444444445567778888876 467999999999876 58999999999999999998544
No 27
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=58.57 E-value=21 Score=26.19 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=36.8
Q ss_pred HHHHHHHHHHh--cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 212 AENLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 212 A~~~AL~lLsr--RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.....|.+|+. ...|..||.+.| |++...|...|..|++.|||.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~l---glsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKC---QVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHH---CSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEe
Confidence 35567888876 457899998887 599999999999999999985
No 28
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=58.11 E-value=11 Score=30.61 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=39.5
Q ss_pred HHHHHHHhcccCHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLATRAFTAVEMRKKLNG----KKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsrRdrS~~ELr~KL~~----KG~sediIe~VLe~L~e~GyLD 258 (376)
..|.+|+..+.+-.+|.+.|.+ .++++..|-.+|.+|++.|||.
T Consensus 26 ~IL~lL~~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~ 73 (115)
T 2dql_A 26 YILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAIT 73 (115)
T ss_dssp HHHHHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEE
Confidence 3789999999999999999975 3589999999999999999995
No 29
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=57.92 E-value=18 Score=28.07 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
.....+.+|.....|..+|.+.| |++...|-..|..|.+.|||.-
T Consensus 22 ~r~~IL~~L~~~~~~~~ela~~l---~is~~tv~~~l~~L~~~gli~~ 66 (114)
T 2oqg_A 22 TRWEILTELGRADQSASSLATRL---PVSRQAIAKHLNALQACGLVES 66 (114)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHS---SSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeeE
Confidence 34567777877789999999988 7999999999999999999964
No 30
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=57.65 E-value=17 Score=29.14 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=37.0
Q ss_pred HHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
-.+|.+|.....|..+|.+.| |++...|-.+|.+|.+.|||.
T Consensus 41 ~~iL~~l~~~~~t~~eLa~~l---~~s~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 41 EHILMLLSEESLTNSELARRL---NVSQAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp HHHHHHHTTCCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCeE
Confidence 346677777779999999999 699999999999999999995
No 31
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=56.60 E-value=25 Score=26.12 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=36.9
Q ss_pred HHHHHHHH-hcccCHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCccH
Q 017157 214 NLAVKLLA-TRAFTAVEMRKKLNG-KKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 214 ~~AL~lLs-rRdrS~~ELr~KL~~-KG~sediIe~VLe~L~e~GyLDD 259 (376)
...|.+|. ....|..+|.+.|.. ++++...|-.+|.+|.+.|||.-
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r 59 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNH 59 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEE
Confidence 34455554 346799999999964 47899999999999999999953
No 32
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=56.55 E-value=33 Score=26.57 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcc----cCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 212 AENLAVKLLATRA----FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 212 A~~~AL~lLsrRd----rS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.....+.+|.... .|..+|.++|- ++...|...|.+|++.|+|.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lg---vsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLG---TPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHT---CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC---cCHHHHHHHHHHHHHCCCEE
Confidence 3455667776655 68899999886 99999999999999999985
No 33
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=56.46 E-value=21 Score=29.50 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHh---cccCHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCccH
Q 017157 209 RQDAENLAVKLLAT---RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 209 ~~~A~~~AL~lLsr---RdrS~~ELr~KL~~K--G~sediIe~VLe~L~e~GyLDD 259 (376)
....+...+.+|.. ...|..||.+.|+++ +++...|-..|+.|.+.|+|.-
T Consensus 16 ~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 16 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 34456677888865 457999999999887 6899999999999999999953
No 34
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=56.29 E-value=16 Score=30.70 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHh--cccCHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCccH
Q 017157 209 RQDAENLAVKLLAT--RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 209 ~~~A~~~AL~lLsr--RdrS~~ELr~KL~~K--G~sediIe~VLe~L~e~GyLDD 259 (376)
....+...+.+|.. ...|..||.+.|++. +++...|-.+|+.|.+.|+|.-
T Consensus 20 ~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 34456677788864 467999999999877 6889999999999999999954
No 35
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.15 E-value=22 Score=30.11 Aligned_cols=51 Identities=10% Similarity=0.168 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHh--cccCHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCccH
Q 017157 209 RQDAENLAVKLLAT--RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 209 ~~~A~~~AL~lLsr--RdrS~~ELr~KL~~K--G~sediIe~VLe~L~e~GyLDD 259 (376)
....+...+.+|.. ...|..||.+.|+++ +++...|-.+|+.|.+.|+|.-
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 45556777888865 467999999999876 6889999999999999999953
No 36
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=55.88 E-value=23 Score=26.41 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..+.+|.. ...|..||.+.| |++...|...|..|.+.|+|.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~l---gvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEAL---AVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHH---TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 45566654 568999999988 699999999999999999996
No 37
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=55.84 E-value=24 Score=27.31 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHh---cccCHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017157 211 DAENLAVKLLAT---RAFTAVEMRKKLNGKKFPSHVIEAVITDF 251 (376)
Q Consensus 211 ~A~~~AL~lLsr---RdrS~~ELr~KL~~KG~sediIe~VLe~L 251 (376)
.....|+++|.. +.-....=++.|+.||+++++|+.++.+.
T Consensus 16 ~li~~Av~FLqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 16 PLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 345667788865 55666777888999999999999999885
No 38
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=55.38 E-value=6.7 Score=32.18 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCccH
Q 017157 211 DAENLAVKLLATRAFTAVEMRKKLNGK---KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 211 ~A~~~AL~lLsrRdrS~~ELr~KL~~K---G~sediIe~VLe~L~e~GyLDD 259 (376)
...-..|.+|+..+.+-++|.+.|... .+++..|-.+|.+|++.|||.-
T Consensus 14 ~l~~~IL~lL~~~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~ 65 (117)
T 3elk_A 14 LITLYILKELVKRPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVIS 65 (117)
T ss_dssp HHHHHHHHHHHHSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 345567899999999999999999864 3788999999999999999964
No 39
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=54.62 E-value=30 Score=27.00 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
.+-..+.+|.....|..+|.+.| |++...|-..|..|.+.|+|.-
T Consensus 27 ~r~~IL~~L~~~~~~~~ela~~l---~is~stvs~~L~~L~~~Glv~~ 71 (106)
T 1r1u_A 27 NRIRIMELLSVSEASVGHISHQL---NLSQSNVSHQLKLLKSVHLVKA 71 (106)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEE
Confidence 44567778887788999999998 6999999999999999999964
No 40
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=53.49 E-value=34 Score=25.62 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=36.1
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
.-..+.+|.. ...|..+|.+.| |++...|-..|..|.+.|||.-
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l---~is~~tv~~~l~~L~~~glv~~ 66 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIAREL---DLSARFVRDRLKVLLKRGFVRR 66 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEE
Confidence 3445556643 678999999998 7999999999999999999963
No 41
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=53.41 E-value=24 Score=30.43 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=40.0
Q ss_pred HHHHHHHHhcccCHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLLATRAFTAVEMRKKLNG-----KKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lLsrRdrS~~ELr~KL~~-----KG~sediIe~VLe~L~e~GyLD 258 (376)
-..|.+|...+.+.++|.+.|.. .+++...|-.+|.+|++.|||.
T Consensus 5 ~~iL~lL~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~ 54 (179)
T 1yg2_A 5 HVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVT 54 (179)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeE
Confidence 45788899999999999999964 3689999999999999999996
No 42
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=53.12 E-value=11 Score=29.72 Aligned_cols=50 Identities=16% Similarity=0.320 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 206 AKARQDAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 206 ~~~~~~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
+++........|.+|.....|..||.++|- ++...|...|..|++.|+|-
T Consensus 12 d~~~~~~~~~IL~lL~~~g~sa~eLAk~Lg---iSk~aVr~~L~~Le~eG~I~ 61 (82)
T 1oyi_A 12 ERSNAEIVCEAIKTIGIEGATAAQLTRQLN---MEKREVNKALYDLQRSAMVY 61 (82)
T ss_dssp -CCSHHHHHHHHHHHSSSTEEHHHHHHHSS---SCHHHHHHHHHHHHHHTSSE
T ss_pred ccchHHHHHHHHHHHHHcCCCHHHHHHHHC---cCHHHHHHHHHHHHHCCCEE
Confidence 445666777888899988899999988764 99999999999999999984
No 43
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=52.51 E-value=23 Score=26.04 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHh
Q 017157 280 RIKQALFKKGISQTDAKKAVNL 301 (376)
Q Consensus 280 kIrqeLrqKGId~eiIeeALee 301 (376)
+=...|..||++.+.|++||..
T Consensus 32 ~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 32 TRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHc
Confidence 3345799999999999999864
No 44
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=52.42 E-value=26 Score=28.72 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHh--cccCHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCccH
Q 017157 209 RQDAENLAVKLLAT--RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 209 ~~~A~~~AL~lLsr--RdrS~~ELr~KL~~K--G~sediIe~VLe~L~e~GyLDD 259 (376)
....+...+.+|.. ...|..||.+.|+++ +++...|-.+|+.|.+.|+|.-
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 34445667777764 357999999999887 6899999999999999999954
No 45
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=50.58 E-value=27 Score=29.31 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=36.9
Q ss_pred HHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHH
Q 017157 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDS 260 (376)
Q Consensus 215 ~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ 260 (376)
..|..|.....+..||.+.| |++...+-..|.+|++.|+|.=.
T Consensus 28 ~IL~~L~~g~~~~~eLa~~l---gis~~tls~~L~~Le~~GlI~r~ 70 (146)
T 2f2e_A 28 LIVRDAFEGLTRFGEFQKSL---GLAKNILAARLRNLVEHGVMVAV 70 (146)
T ss_dssp HHHHHHHTTCCSHHHHHHHH---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEEE
Confidence 35666766778999999998 89999999999999999999643
No 46
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=50.33 E-value=1.8e+02 Score=28.03 Aligned_cols=30 Identities=10% Similarity=-0.028 Sum_probs=20.4
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 017157 340 APKETRKSRIIHWLQYRGFNWCVTSFILKK 369 (376)
Q Consensus 340 ~~~~k~rqKlir~L~RKGFs~d~I~~vL~e 369 (376)
.+....+.++.-.+..-||+-+.|..++..
T Consensus 143 ~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r 172 (335)
T 4fp9_B 143 MRQQDINDTVRLLKEKCLFTVQQVTKILHS 172 (335)
T ss_dssp SCHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 344455555554456779999999988875
No 47
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=50.02 E-value=27 Score=29.56 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHh---cccCHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCccH
Q 017157 209 RQDAENLAVKLLAT---RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 209 ~~~A~~~AL~lLsr---RdrS~~ELr~KL~~K--G~sediIe~VLe~L~e~GyLDD 259 (376)
....+...+.+|.. ...|..||.+.|.+. +++...|-.+|+.|.+.|+|.-
T Consensus 15 ~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 15 VTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp CCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 34446677888865 457999999999887 6889999999999999999953
No 48
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=50.01 E-value=33 Score=28.60 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHh--cccCHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCccH
Q 017157 208 ARQDAENLAVKLLAT--RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 208 ~~~~A~~~AL~lLsr--RdrS~~ELr~KL~~K--G~sediIe~VLe~L~e~GyLDD 259 (376)
-....+...|.+|.. ...|..||.+.|+++ +++...|-++|+.|.+.|+|.-
T Consensus 11 r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred ccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 344556777888865 457999999999876 5889999999999999999854
No 49
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=49.89 E-value=21 Score=28.22 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
+...+.+|.....|..||.+.| |+++..|-..|..|++.|+|.-
T Consensus 27 r~~IL~~L~~~~~s~~eLa~~l---gis~stvs~~L~~L~~~GlV~~ 70 (108)
T 2kko_A 27 RLQILDLLAQGERAVEAIATAT---GMNLTTASANLQALKSGGLVEA 70 (108)
T ss_dssp THHHHHHHTTCCEEHHHHHHHH---TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEE
Confidence 4467778887888999999988 6999999999999999999964
No 50
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=49.56 E-value=59 Score=27.85 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=55.3
Q ss_pred HHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH-HHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCH
Q 017157 214 NLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND-SLYAESYSRSRWSSASWGPRRIKQALFKKGISQ 292 (376)
Q Consensus 214 ~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD-~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~ 292 (376)
..++..+..-.||-..-...+++.|.+++.|+.+.....+. ..++ ++-+-.|+....+..+.-+....+.|+..|++.
T Consensus 74 ~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~~~~~~-~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~ 152 (188)
T 3c1l_A 74 AVAVSSINHCYYCLTAHGAAVRQLSGDPALGEMLVMNFRAA-DLSPRQTAMLEFAVKLTEEPAKIVEADRAALRKAGFSD 152 (188)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSCHHHHHHHHHCGGGG-CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHTTCCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCH
Confidence 33334444444444444455677799999998887544444 3455 566666776665433334566778899999999
Q ss_pred HHHHHHHHhh
Q 017157 293 TDAKKAVNLV 302 (376)
Q Consensus 293 eiIeeALee~ 302 (376)
..|-+++.-+
T Consensus 153 ~ei~el~~~i 162 (188)
T 3c1l_A 153 RDIWDIASTA 162 (188)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877766543
No 51
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=49.55 E-value=64 Score=27.79 Aligned_cols=89 Identities=8% Similarity=0.063 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH-HHHHHHHHHhhhhcCCccHHHHHHHHHhCCCC
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND-SLYAESYSRSRWSSASWGPRRIKQALFKKGIS 291 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD-~ryAesyvrsr~~~kg~GprkIrqeLrqKGId 291 (376)
-..++..+..-.||-..-...+++.|.+++.|+.+.....+. ..++ ++-+-.|+....+..+.-+....+.|+..|++
T Consensus 76 i~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~~~~~~-~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s 154 (191)
T 2pfx_A 76 IAVVVSSINKCFYCLVAHGAAVRQLSGDPQLGEMLVMNYRVA-PLDARQRVMLDFAAKMTRASAEIEEADREVLRSHGFN 154 (191)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHHCGGGS-CCCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCC
Confidence 334444444444554444555677799999998887544444 4455 55566666665443333455677788899999
Q ss_pred HHHHHHHHHhh
Q 017157 292 QTDAKKAVNLV 302 (376)
Q Consensus 292 ~eiIeeALee~ 302 (376)
...|-+++.-+
T Consensus 155 ~~ei~el~~~i 165 (191)
T 2pfx_A 155 DRDIWDIANVT 165 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877766543
No 52
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=49.09 E-value=30 Score=25.87 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=36.3
Q ss_pred HHHHHHHHH-hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLs-rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-..+.+|. ....|..+|.+.| |++...|-..|..|++.|||.
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~l---~is~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKVL---DLTPGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 444566664 5678999999988 799999999999999999996
No 53
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=48.84 E-value=31 Score=27.29 Aligned_cols=44 Identities=7% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcc---cCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 212 AENLAVKLLATRA---FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 212 A~~~AL~lLsrRd---rS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..-.+|.+|.... .|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l---~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEF---SIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHH---CCCcchHHHHHHHHHHCCCEE
Confidence 3445677777664 7999999988 689999999999999999994
No 54
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=47.19 E-value=94 Score=24.86 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=38.6
Q ss_pred HHHHHHHHH-hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHH
Q 017157 213 ENLAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDS 260 (376)
Q Consensus 213 ~~~AL~lLs-rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ 260 (376)
+-..+.+|. ....|..+|.+.| |++...|-..|..|.+.|+|.-.
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l---~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANIL---GVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEEE
Confidence 446777887 6788999999998 79999999999999999999643
No 55
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=46.05 E-value=30 Score=27.66 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 212 A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..-.+|..|....-|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 38 ~~~~iL~~l~~~~~~~~~la~~l---~~~~~tvs~~l~~Le~~Glv~ 81 (144)
T 3f3x_A 38 LDFSILKATSEEPRSMVYLANRY---FVTQSAITAAVDKLEAKGLVR 81 (144)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHCCCCHHHHHHHH---CCChhHHHHHHHHHHHCCCEE
Confidence 34467777776666999999988 699999999999999999995
No 56
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=45.98 E-value=31 Score=27.36 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhc---ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 211 DAENLAVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 211 ~A~~~AL~lLsrR---drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
...-.+|.+|... ..|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 31 ~~~~~vL~~l~~~~~~~~t~~ela~~l---~~~~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGLTQNDIAKAL---QRTGPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHHHHHHHHHHSTTTCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHh---CCCcccHHHHHHHHHHCCCEe
Confidence 3445667777765 67999999988 599999999999999999995
No 57
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=45.91 E-value=26 Score=27.82 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=36.9
Q ss_pred HHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 215 ~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
..|..|.....+..+|.+.|. |++...+-..|.+|++.|||.-
T Consensus 26 ~IL~~L~~~~~~~~eLa~~l~--~is~~tvs~~L~~Le~~GlI~r 68 (112)
T 1z7u_A 26 SLMDELFQGTKRNGELMRALD--GITQRVLTDRLREMEKDGLVHR 68 (112)
T ss_dssp HHHHHHHHSCBCHHHHHHHST--TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCHHHHHHHhc--cCCHHHHHHHHHHHHHCCCEEE
Confidence 456777777889999999873 7999999999999999999963
No 58
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=45.85 E-value=55 Score=26.63 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHH-HHHHHHHHh
Q 017157 227 AVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDS-LYAESYSRS 269 (376)
Q Consensus 227 ~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~-ryAesyvrs 269 (376)
...|.++|..-|=-+..-+-.-.+|.+.||.|+- .+|+.+++.
T Consensus 13 ka~I~~~LveSGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~ 56 (101)
T 4dhx_B 13 RAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKE 56 (101)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 4556677776666566555666889999999984 455555543
No 59
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=45.36 E-value=39 Score=25.36 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=33.8
Q ss_pred HHHHH-hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 217 VKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 217 L~lLs-rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
+.++. ....|..+|.+.| |++...|-..|..|.+.|||.-
T Consensus 28 ~~l~~~~~~~t~~ela~~l---~is~~tv~~~l~~L~~~g~v~~ 68 (109)
T 2d1h_A 28 LKMVEIEKPITSEELADIF---KLSKTTVENSLKKLIELGLVVR 68 (109)
T ss_dssp HHHHHHCSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEe
Confidence 34444 5678999999988 7999999999999999999964
No 60
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=45.28 E-value=42 Score=27.16 Aligned_cols=44 Identities=11% Similarity=0.261 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcc---cCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 212 AENLAVKLLATRA---FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 212 A~~~AL~lLsrRd---rS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
....++..|.... .|..||.+.| |++...|...|..|.+.|||.
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l---~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSL---KLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 3445666666543 5999999998 489999999999999999995
No 61
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=45.27 E-value=20 Score=28.69 Aligned_cols=42 Identities=2% Similarity=0.171 Sum_probs=34.2
Q ss_pred HHHHH-hcccCHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCcc
Q 017157 217 VKLLA-TRAFTAVEMRKKLNG-KKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 217 L~lLs-rRdrS~~ELr~KL~~-KG~sediIe~VLe~L~e~GyLD 258 (376)
|..|. ....|..||.+.|.. ++++...|-.+|++|++.|||.
T Consensus 41 L~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 41 MRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp HHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 34443 345799999999975 4789999999999999999985
No 62
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=44.77 E-value=45 Score=27.23 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=39.1
Q ss_pred HHHHHHHHHh--cccCHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLAT--RAFTAVEMRKKLNG-KKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLsr--RdrS~~ELr~KL~~-KG~sediIe~VLe~L~e~GyLDD 259 (376)
.-..|.+|.. ...|..+|.+.|.. ++++...|-.+|++|.+.|||.=
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r 60 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQ 60 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4456677765 47899999999974 47899999999999999999964
No 63
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=44.74 E-value=26 Score=27.35 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcc-cCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 209 RQDAENLAVKLLATRA-FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 209 ~~~A~~~AL~lLsrRd-rS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..+....|+..|.--+ .|..+|.++|. .+...|.++|-.|.+.|||.
T Consensus 13 ~~~~v~~~i~~L~~~~~~Ta~~IAkkLg---~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTTAISLSNRLK---INKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHTT---CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHC---CCHHHHHHHHHHHHHCCCEe
Confidence 3444556677777777 88899998874 88999999999999999984
No 64
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.18 E-value=1.2e+02 Score=26.29 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHH-cCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHH
Q 017157 242 HVIEAVITDFQS-RGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDA 295 (376)
Q Consensus 242 diIe~VLe~L~e-~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiI 295 (376)
...++++..+.. ..|-||.||.+-|+.---. ...|..|-+.|..+||.....
T Consensus 49 ~lLErc~~~f~~~~~YknD~RyLklWl~ya~~--~~dp~~if~~L~~~~IG~~~A 101 (152)
T 4a1g_A 49 TLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY--NSDLHQFFEFLYNHGIGTLSS 101 (152)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT--BSCHHHHHHHHHTTTTTTTBH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHCCCcHHHH
Confidence 355666666644 5899999999998876532 335999999999999998654
No 65
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=44.16 E-value=49 Score=25.01 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=35.6
Q ss_pred HHHHHHHHhcc----cCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLLATRA----FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lLsrRd----rS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
...+.+|.... .|..||.++|- ++...|...|.+|++.|+|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lg---vs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLG---TPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHC---CCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHC---cCHHHHHHHHHHHHHCCCEE
Confidence 45667777766 68899999986 89999999999999999984
No 66
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=43.95 E-value=30 Score=27.15 Aligned_cols=43 Identities=12% Similarity=0.328 Sum_probs=36.4
Q ss_pred HHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 215 ~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
..|..|.....+..||.+.| .|+++..+-..|.+|++.|||.-
T Consensus 18 ~IL~~L~~~~~~~~eLa~~l--~~is~~tls~~L~~Le~~GlI~r 60 (107)
T 2hzt_A 18 VILXHLTHGKKRTSELKRLM--PNITQKMLTQQLRELEADGVINR 60 (107)
T ss_dssp HHHHHHTTCCBCHHHHHHHC--TTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCHHHHHHHh--cCCCHHHHHHHHHHHHHCCCEEE
Confidence 45677777778999999876 38999999999999999999963
No 67
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=43.25 E-value=73 Score=27.60 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=54.1
Q ss_pred HHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH-HHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHH
Q 017157 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND-SLYAESYSRSRWSSASWGPRRIKQALFKKGISQT 293 (376)
Q Consensus 215 ~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD-~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~e 293 (376)
.++..+..-.||-..-...+++.|.+++.|+.+.....+. ..++ ++-+-.|+.......+.-+....+.|+..|++..
T Consensus 79 l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~~~~~~-~~~~~era~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ 157 (197)
T 2prr_A 79 VATSAANQCLYCVVAHGAILRIYEKKPLVADQVAVNYLKA-DIPPRQRAMLDFALKVCKASHEVNEADFEALREHGFTDE 157 (197)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTCTTHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHTTTCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHH
Confidence 3333344444444444445666799999999888555555 4555 5555566666543233345567778889999988
Q ss_pred HHHHHHHhh
Q 017157 294 DAKKAVNLV 302 (376)
Q Consensus 294 iIeeALee~ 302 (376)
.|-+++.-+
T Consensus 158 ei~el~~~i 166 (197)
T 2prr_A 158 DAWDIAAIT 166 (197)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877766543
No 68
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=43.25 E-value=46 Score=25.21 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=34.7
Q ss_pred HHHHHHh-cccCHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 216 AVKLLAT-RAFTAVEMRKKL-NGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 216 AL~lLsr-RdrS~~ELr~KL-~~KG~sediIe~VLe~L~e~GyLD 258 (376)
+|..|.. ...|..+|.+.| ...+++...|-.+|.+|++.|||.
T Consensus 13 iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 4555554 457889998777 445999999999999999999995
No 69
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=42.89 E-value=45 Score=26.21 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=35.9
Q ss_pred HHHHHH-hcccCHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCccH
Q 017157 216 AVKLLA-TRAFTAVEMRKKLNG-KKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 216 AL~lLs-rRdrS~~ELr~KL~~-KG~sediIe~VLe~L~e~GyLDD 259 (376)
.|..|. ....|..+|.+.|.. ++++...|-.+|.+|.+.|||.=
T Consensus 15 vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R 60 (126)
T 1sd4_A 15 VMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKR 60 (126)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEE
Confidence 444444 346899999999974 58999999999999999999953
No 70
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=42.53 E-value=34 Score=27.21 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.++.+|.....|..+|.+.| |++...|-.+|.+|.+.|||.
T Consensus 39 ~~~iL~~l~~~~~~~~ela~~l---~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 39 DFLVLRATSDGPKTMAYLANRY---FVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCcCHHHHHHHh---CCCchhHHHHHHHHHHCCCEE
Confidence 3445566666667899999887 699999999999999999995
No 71
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=42.47 E-value=20 Score=27.76 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhh
Q 017157 280 RIKQALFKKGISQTDAKKAVNLVF 303 (376)
Q Consensus 280 kIrqeLrqKGId~eiIeeALee~~ 303 (376)
+=++.|..||++.+.|++||....
T Consensus 37 ~K~~FL~sKGLt~eEI~~Al~ra~ 60 (70)
T 2w84_A 37 TRRAFLKKKGLTDEEIDMAFQQSG 60 (70)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcc
Confidence 334579999999999999998863
No 72
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=42.31 E-value=71 Score=25.72 Aligned_cols=44 Identities=7% Similarity=0.044 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH-HHHHHHHHHhh
Q 017157 227 AVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND-SLYAESYSRSR 270 (376)
Q Consensus 227 ~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD-~ryAesyvrsr 270 (376)
...|.++|..-|=-+..-+-.-.+|.+.||.|+ ..+|+.+++.+
T Consensus 9 k~~I~~~LveSGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~ 53 (96)
T 3mhs_B 9 KSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNIN 53 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhc
Confidence 456677777777666656666689999999999 57788888665
No 73
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.04 E-value=22 Score=29.92 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=37.8
Q ss_pred HHHHHHHHHHh-cccCHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLAT-RAFTAVEMRKKLNGK--KFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsr-RdrS~~ELr~KL~~K--G~sediIe~VLe~L~e~GyLDD 259 (376)
.+...+.+|.. ...|..||.+.|+++ +++...|-++|+.|.+.|+|.-
T Consensus 20 qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 20 QRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 34555555543 357899999999887 5789999999999999999853
No 74
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=41.62 E-value=37 Score=27.39 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=33.0
Q ss_pred HHHHHHh----cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 216 AVKLLAT----RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 216 AL~lLsr----RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
++.+|+. ...|..+|.+.+ |++...+.+++..|.+.|||.-
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~---~i~~~~v~~il~~L~~~Glv~~ 58 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTN---NLSEHYLEQLVSPLRNAGLVKS 58 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHT---TSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhCCCCCcCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceEe
Confidence 4445554 347888888776 7999999999999999999964
No 75
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=41.58 E-value=30 Score=27.13 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=35.9
Q ss_pred HHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..+..|.....+..||.+.|. |+++..+-..|..|++.|+|.
T Consensus 29 ~IL~~L~~~~~~~~eL~~~l~--gis~~~ls~~L~~Le~~GlV~ 70 (107)
T 2fsw_A 29 LIIFQINRRIIRYGELKRAIP--GISEKMLIDELKFLCGKGLIK 70 (107)
T ss_dssp HHHHHHTTSCEEHHHHHHHST--TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCcCHHHHHHHcc--cCCHHHHHHHHHHHHHCCCEE
Confidence 456677767789999998773 699999999999999999996
No 76
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=41.50 E-value=37 Score=25.38 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=25.2
Q ss_pred ccCHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHcCCc
Q 017157 224 AFTAVEMRKKLNGK-------------KFPSHVIEAVITDFQSRGLI 257 (376)
Q Consensus 224 drS~~ELr~KL~~K-------------G~sediIe~VLe~L~e~GyL 257 (376)
+.|+.+|-.+++.. |++.+.|-.+|.+|++.|+|
T Consensus 9 ~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI 55 (59)
T 2xvc_A 9 MITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLI 55 (59)
T ss_dssp CCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred hccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCe
Confidence 44566666666543 58888888999999888886
No 77
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=41.22 E-value=21 Score=30.78 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=40.1
Q ss_pred HHHHHHHHhcccCHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCccH
Q 017157 214 NLAVKLLATRAFTAVEMRKKLNG----KKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 214 ~~AL~lLsrRdrS~~ELr~KL~~----KG~sediIe~VLe~L~e~GyLDD 259 (376)
-..|.+|...+..-++|.+.|.+ .++++..|-.+|.+|++.|||.-
T Consensus 47 ~~IL~lL~~~p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~ 96 (148)
T 2zfw_A 47 CYVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISG 96 (148)
T ss_dssp HHHHHHHTTCCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEE
Confidence 34789999999999999999975 35889999999999999999953
No 78
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=41.15 E-value=25 Score=29.76 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=39.8
Q ss_pred HHHHHHHhcccCHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCccH
Q 017157 215 LAVKLLATRAFTAVEMRKKLNG----KKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 215 ~AL~lLsrRdrS~~ELr~KL~~----KG~sediIe~VLe~L~e~GyLDD 259 (376)
..|.+|...+..-++|.+.|.+ .++++..|-.+|.+|++.|||.-
T Consensus 38 ~IL~lL~~~~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~ 86 (138)
T 2e1n_A 38 YVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISG 86 (138)
T ss_dssp HHHHHHTTSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEE
Confidence 4788999999999999999975 36899999999999999999953
No 79
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=41.09 E-value=72 Score=23.76 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=33.4
Q ss_pred cccCHHHH---HHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhh
Q 017157 223 RAFTAVEM---RKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWS 272 (376)
Q Consensus 223 RdrS~~EL---r~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~ 272 (376)
|..|+.|+ ...+...|+++++|..++..+...|-.+ .+|++..+.++.+
T Consensus 16 r~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~~~~~~s-~~Yi~~Il~~W~~ 67 (78)
T 2zc2_A 16 RMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTN-WNYIQAILRNWRH 67 (78)
T ss_dssp SCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence 44555554 4455667899999999999987666543 6677666666543
No 80
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=40.86 E-value=62 Score=28.06 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH-HHHHHHHHHhhhhcCCccHHHHHHHHHhCCCC
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND-SLYAESYSRSRWSSASWGPRRIKQALFKKGIS 291 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD-~ryAesyvrsr~~~kg~GprkIrqeLrqKGId 291 (376)
-..++..+..-.||-..=...+++.|.+++.|+.+.....+. .+++ ++-+-.|+.......+.-.....+.|+..|++
T Consensus 81 i~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~~~~~~-~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s 159 (196)
T 2oyo_A 81 VAVVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAVNWRHA-DLTEREQALAAYAEKLTRHPAEVTAADLEPLRAVGLD 159 (196)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHHCGGGS-CCCHHHHHHHHHHHHHHHCGGGCCGGGGHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCC
Confidence 334444444444444444555677799999999887644444 4555 55556666665542233344567789999999
Q ss_pred HHHHHHHHHhh
Q 017157 292 QTDAKKAVNLV 302 (376)
Q Consensus 292 ~eiIeeALee~ 302 (376)
...|-+++.-+
T Consensus 160 ~~ei~el~~~i 170 (196)
T 2oyo_A 160 DHQIMELVQVI 170 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887766543
No 81
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=40.72 E-value=10 Score=33.28 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=25.1
Q ss_pred hcccCHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCH
Q 017157 222 TRAFTAVEMRKKLNGKKFP-----SHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQ 292 (376)
Q Consensus 222 rRdrS~~ELr~KL~~KG~s-----ediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~ 292 (376)
....|..+|+..|..+|++ .+.|+++.+.+...-=++|......+-...+ .+.--..++..|.++|++.
T Consensus 61 L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~Kve~s~eei~~~~~~g~l--~klTV~~Lk~~l~~~gl~~ 134 (151)
T 1jjr_A 61 LGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDKVEYSEEELKTHISKGTL--GKFTVPMLKEACRAYGLKS 134 (151)
T ss_dssp TTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC---------------------------------------
T ss_pred HHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhhccccHHHHHHHHhcCcc--ccccHHHHHHHHHHcCCCC
Confidence 3458889999999988876 5788888877755544566655444321111 1233445888899999875
No 82
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=40.71 E-value=28 Score=27.95 Aligned_cols=44 Identities=9% Similarity=0.095 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
+-..+.+|.....|..+|.+.| |++...|-..|..|.+.|+|.-
T Consensus 23 r~~IL~~L~~~~~~~~eLa~~l---gis~stvs~~L~~L~~~GlV~~ 66 (118)
T 2jsc_A 23 RCRILVALLDGVCYPGQLAAHL---GLTRSNVSNHLSCLRGCGLVVA 66 (118)
T ss_dssp HHHHHHHHHTTCCSTTTHHHHH---SSCHHHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceEE
Confidence 4566777877788999999988 7999999999999999999964
No 83
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=40.52 E-value=50 Score=25.91 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=34.6
Q ss_pred HHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
-.++.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 32 ~~iL~~l~~~~~~~~~ela~~l---~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 32 VACLLRIHREPGIKQDELATFF---HVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHHHHHHHHSTTCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 345555554 557899999998 699999999999999999995
No 84
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=39.70 E-value=62 Score=26.20 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
+-..+.+|.....|..+|.+.| |++...|-..|..|++.|++.-
T Consensus 48 rl~IL~~L~~~~~s~~ela~~l---gis~stvs~~L~~Le~~Glv~~ 91 (122)
T 1r1t_A 48 RLRLLSLLARSELCVGDLAQAI---GVSESAVSHQLRSLRNLRLVSY 91 (122)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCeEE
Confidence 3457778877788999999998 7999999999999999999964
No 85
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=39.67 E-value=98 Score=24.16 Aligned_cols=43 Identities=9% Similarity=0.218 Sum_probs=35.6
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.++..|.. ...|..+|.+.| |++...|-.+|.+|.+.|||.
T Consensus 33 ~~~iL~~l~~~~~~~~~ela~~l---~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 33 RYSILQTLLKDAPLHQLALQERL---QIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 3456666654 567999999988 699999999999999999994
No 86
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=38.98 E-value=30 Score=27.58 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 211 ~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
..+-..+.+|.....|..+|.+.| |++...|-.-|..|.+.|+|.-
T Consensus 18 ~~R~~Il~~L~~~~~~~~eLa~~l---~is~~tvs~hL~~L~~~GlV~~ 63 (118)
T 3f6o_A 18 PTRRAVLGRLSRGPATVSELAKPF---DMALPSFMKHIHFLEDSGWIRT 63 (118)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHTTC---CSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHh---CcCHHHHHHHHHHHHHCCCeEE
Confidence 345667888888889999998776 8999999999999999999964
No 87
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=38.84 E-value=45 Score=26.53 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=34.5
Q ss_pred HHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALWT---KKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHH---CCCHhhHHHHHHHHHHCCCee
Confidence 345566654 567889999988 699999999999999999995
No 88
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.76 E-value=1.7e+02 Score=26.97 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHc-CCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHH
Q 017157 242 HVIEAVITDFQSR-GLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDA 295 (376)
Q Consensus 242 diIe~VLe~L~e~-GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiI 295 (376)
.+.++++..+... .|-||.||.+.|+.--- ....|..|-..|..+||.....
T Consensus 98 ~lLErc~~~F~~~~rYknD~RyLklWl~Ya~--~~~~p~~if~~L~~~~IG~~~A 150 (223)
T 4aez_C 98 TLLERCTREFVRNPLYKDDVRYLRIWMQYVN--YIDEPVELFSFLAHHHIGQESS 150 (223)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHT--TCSCHHHHHHHHHHTTCSTTBH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHH--ccCCHHHHHHHHHHCCcchhHH
Confidence 3566666666554 79999999999887653 3468999999999999988653
No 89
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=38.48 E-value=17 Score=32.82 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGK-----KFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~K-----G~sediIe~VLe~L~e~GyLD 258 (376)
+...|.+|+..+.+-+||.+.|.+. .+++..|-.+|.+|++.|||.
T Consensus 38 r~~IL~lL~~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~ 88 (204)
T 3l9f_A 38 KDIILGILSKKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKIT 88 (204)
T ss_dssp HHHHHHHTSSCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeE
Confidence 5577899999999999999999865 578899999999999999995
No 90
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.37 E-value=46 Score=26.28 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=34.7
Q ss_pred HHHHHHH-H-hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLL-A-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lL-s-rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
-.+|.+| . ....|..+|.+.| |++...|-.+|.+|.+.|||.
T Consensus 40 ~~iL~~l~~~~~~~t~~~la~~l---~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 40 WLVLLHLARHRDSPTQRELAQSV---GVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHHHHHHHCSSCCBHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHh---CCChhhHHHHHHHHHHCCCee
Confidence 3456666 3 4567899999988 699999999999999999995
No 91
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=37.89 E-value=1.6e+02 Score=28.51 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=31.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHHHHHHHh
Q 017157 232 KKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAVNL 301 (376)
Q Consensus 232 ~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiIeeALee 301 (376)
+.|...|+++..|..+|...- .+-... -.-+...|..-|++.+.|-.+|..
T Consensus 51 ~~L~d~Gfs~~~i~~il~~~P---~il~~~----------------l~~~i~~L~~LGls~e~V~kiL~k 101 (335)
T 4fp9_B 51 SSLLDMGFSNAHINELLSVRR---GASLQQ----------------LLDIISEFILLGLNPEPVCVVLKK 101 (335)
T ss_dssp HHHHHTTCCHHHHHHHHHHCS---SCCHHH----------------HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHhCc---ccchhH----------------HHHHHHHHHHcCCCHHHHHHHHHh
Confidence 345556666666666665541 121111 123456788889999988888865
No 92
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=36.98 E-value=1.4e+02 Score=22.79 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=48.9
Q ss_pred HHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHH--------HH---HHHHHHhhhhc-CCccHHHHH
Q 017157 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDS--------LY---AESYSRSRWSS-ASWGPRRIK 282 (376)
Q Consensus 215 ~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~--------ry---Aesyvrsr~~~-kg~GprkIr 282 (376)
.++.++. ...|..++-+.| |++...|...+.++.+.|.+.+. .+ ....+...+.. ..++...|.
T Consensus 25 ~i~~~~~-~g~s~~~ia~~l---gis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~s~~~i~ 100 (128)
T 1pdn_C 25 KIVEMAA-DGIRPCVISRQL---RVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIR 100 (128)
T ss_dssp HHHHHHH-TTCCHHHHHHHH---TCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHH---CcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCcchHHHHHH
Confidence 4445543 567888888777 68999999999998776654321 00 12233333321 346677777
Q ss_pred HHHHhCCC-------CHHHHHHHH
Q 017157 283 QALFKKGI-------SQTDAKKAV 299 (376)
Q Consensus 283 qeLrqKGI-------d~eiIeeAL 299 (376)
..|...|+ +...|..+|
T Consensus 101 ~~l~~~g~~~~~~~~s~~tv~r~l 124 (128)
T 1pdn_C 101 EKLIREGVCDRSTAPSVSAISRLV 124 (128)
T ss_dssp HHHHHTSSSCSTTCCCHHHHHHHC
T ss_pred HHHHHcCCccccCCcCHHHHHHHH
Confidence 77766664 555555544
No 93
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=36.73 E-value=46 Score=25.24 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=33.6
Q ss_pred HHHHHHhc--ccCHHHHHHHHhcCCCCHHH-HHHHHHHHHHcCCcc
Q 017157 216 AVKLLATR--AFTAVEMRKKLNGKKFPSHV-IEAVITDFQSRGLIN 258 (376)
Q Consensus 216 AL~lLsrR--drS~~ELr~KL~~KG~sedi-Ie~VLe~L~e~GyLD 258 (376)
.|.+|... ..|..+|.+.| |++... +-..|.+|++.|||.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l---~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKAS---GVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHH---CCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCCCHHHHHHHH---CCCchHHHHHHHHHHHHCCCee
Confidence 44555554 58999999998 599999 999999999999996
No 94
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=36.55 E-value=51 Score=26.49 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=36.3
Q ss_pred HHHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
..-.+|..|.. ...|..+|.+.| |++...|-.+|.+|.+.|||.-
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRL---IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEe
Confidence 33456666665 457899999988 6899999999999999999963
No 95
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=36.12 E-value=40 Score=26.88 Aligned_cols=45 Identities=16% Similarity=0.337 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 211 DAENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 211 ~A~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
...-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQM---CRDKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHH---C---CHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEe
Confidence 344456667765 467899999988 699999999999999999995
No 96
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.95 E-value=82 Score=24.95 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHHHHHHHHh--cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 212 AENLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 212 A~~~AL~lLsr--RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..-.+|..|.. ...|..+|.+.| |++...|-.+|.+|.+.|||.
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l---~i~~~~vs~~l~~Le~~glv~ 81 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAE---RMRSSNLAALLRELERGGLIV 81 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHh---CCChhhHHHHHHHHHHCCCEe
Confidence 33456667764 567999999987 699999999999999999994
No 97
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.87 E-value=1.9e+02 Score=26.24 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHc-CCccHHHHHHHHHHhhhhcCC---ccHHHHHHHHHhCCCCHHHH
Q 017157 242 HVIEAVITDFQSR-GLINDSLYAESYSRSRWSSAS---WGPRRIKQALFKKGISQTDA 295 (376)
Q Consensus 242 diIe~VLe~L~e~-GyLDD~ryAesyvrsr~~~kg---~GprkIrqeLrqKGId~eiI 295 (376)
.+.++++..+... .|-||.||.+-|+.---.... ..|..|-..|..+||.....
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~A 115 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLS 115 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHH
Confidence 3556666666544 799999999988866432112 37999999999999988654
No 98
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=35.78 E-value=57 Score=25.56 Aligned_cols=44 Identities=7% Similarity=0.215 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
.-..+.+|.....|..+|.+.| |++...|-..|..|++.|++.-
T Consensus 34 ~~~il~~L~~~~~s~~ela~~l---~is~stvsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 34 RLMILTQLRNGPLPVTDLAEAI---GMEQSAVSHQLRVLRNLGLVVG 77 (119)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHH---SSCHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEE
Confidence 3456667766678999999998 7999999999999999999953
No 99
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=35.65 E-value=60 Score=28.96 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 211 ~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
...-..|.+|.....|..+|.+.| |++...|-..|..|.+.|+|.-
T Consensus 15 ~~rl~IL~~L~~~~~s~~eLa~~l---~is~stvs~hLk~Le~~GLV~~ 60 (202)
T 2p4w_A 15 ETRRRILFLLTKRPYFVSELSREL---GVGQKAVLEHLRILEEAGLIES 60 (202)
T ss_dssp HHHHHHHHHHHHSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceEE
Confidence 345567788888899999999999 7999999999999999999964
No 100
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=35.53 E-value=63 Score=27.57 Aligned_cols=46 Identities=9% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHh---cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 210 QDAENLAVKLLAT---RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 210 ~~A~~~AL~lLsr---RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..+.-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV~ 88 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKM---GTSKQNINRLVANLEKNGYVD 88 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 3444556777774 468999999988 699999999999999999994
No 101
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.52 E-value=1.4e+02 Score=26.09 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=39.2
Q ss_pred HHHHHHHHHHH-cCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHH
Q 017157 243 VIEAVITDFQS-RGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDA 295 (376)
Q Consensus 243 iIe~VLe~L~e-~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiI 295 (376)
+.++++..+.. ..|-||.||.+.|+.--- ..--|..|-+.|..+||.....
T Consensus 45 lLErc~~~f~~~~~YknD~RyLklWl~ya~--~~~~p~~if~~L~~~~IG~~~A 96 (164)
T 2wvi_A 45 LLERAVEALQGEKRYYSDPRFLNLWLKLGR--LCNEPLDMYSYLHNQGIGVSLA 96 (164)
T ss_dssp HHHHHHHHTTTCGGGTTCHHHHHHHHHHHH--HCSCHHHHHHHHHHTTSSTTBH
T ss_pred HHHHHHHHhhhhhhhccCHHHHHHHHHHHH--hcCCHHHHHHHHHHCCcchhhH
Confidence 56777777644 489999999999985432 2345999999999999998654
No 102
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=35.18 E-value=52 Score=27.30 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=35.5
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~l---~is~~tvs~~l~~Le~~GlV~ 90 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATLL---GVQPSATGRMVDRLVGAELID 90 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEE
Confidence 3445666654 567899999988 699999999999999999994
No 103
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=35.16 E-value=42 Score=27.09 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|..|.....|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 40 q~~iL~~l~~~~~t~~eLa~~l---~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 40 QSHVLNMLSIEALTVGQITEKQ---GVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHH---CSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 3446666666788999999988 589999999999999999997
No 104
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=34.91 E-value=58 Score=25.77 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.++..|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 33 ~iL~~l~~~~~~t~~~la~~l---~~s~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 33 LYLVRVCENPGIIQEKIAELI---KVDRTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCcCcCHHHHHHHH---CCCHhHHHHHHHHHHHCCCEE
Confidence 34555554 357899999988 699999999999999999995
No 105
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=34.85 E-value=1.1e+02 Score=23.93 Aligned_cols=43 Identities=12% Similarity=0.305 Sum_probs=35.2
Q ss_pred HHHHHHHH--HhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLL--ATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lL--srRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
...++.+| +....|..+|.+.| |++...|-.+|..|++.|||.
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~l---~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEEL---KISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 34455555 34678999999998 699999999999999999995
No 106
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.50 E-value=1.7e+02 Score=23.00 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=52.5
Q ss_pred HHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHhhhhcCCccHHHHHHHH
Q 017157 215 LAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRG---------LINDSLYAESYSRSRWSSASWGPRRIKQAL 285 (376)
Q Consensus 215 ~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~G---------yLDD~ryAesyvrsr~~~kg~GprkIrqeL 285 (376)
.++.++ ....|..++-+.| |++...|...+.++.+.| -+++... ...++. .....+++..|...|
T Consensus 14 ~i~~~~-~~G~s~~~ia~~l---gis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~-~~i~~~-~~~~~~s~~~i~~~l 87 (141)
T 1u78_A 14 QLDVMK-LLNVSLHEMSRKI---SRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDE-RNVIRA-ASNSCKTARDIRNEL 87 (141)
T ss_dssp HHHHHH-HTTCCHHHHHHHH---TCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHH-HHHHHH-HHHCCCCHHHHHHHT
T ss_pred HHHHHH-HcCCCHHHHHHHH---CcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHH-HHHHHH-HhCCCCCHHHHHHHH
Confidence 334444 3557888888877 799999999999888776 3444322 122222 222568888888888
Q ss_pred HhCC--CCHHHHHHHHHh
Q 017157 286 FKKG--ISQTDAKKAVNL 301 (376)
Q Consensus 286 rqKG--Id~eiIeeALee 301 (376)
| ++...|..+|..
T Consensus 88 ---g~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 88 ---QLSASKRTILNVIKR 102 (141)
T ss_dssp ---TCCSCHHHHHHHHHH
T ss_pred ---CCCccHHHHHHHHHH
Confidence 6 788888887765
No 107
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=34.26 E-value=63 Score=24.55 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=27.8
Q ss_pred cCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Q 017157 225 FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (376)
Q Consensus 225 rS~~ELr~KL~~KG~sediIe~VLe~L~e~GyL 257 (376)
.|..+|.+.| |++...|-.+|..|++.|||
T Consensus 31 ~t~~eLa~~l---~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKV---NSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHS---SSCHHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHH---CcCHHHHHHHHHHHHHCcCc
Confidence 6889999886 69999999999999999999
No 108
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=34.13 E-value=27 Score=24.93 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=14.5
Q ss_pred HHHHHhCCCCHHHHHHHHHh
Q 017157 350 IHWLQYRGFNWCVTSFILKK 369 (376)
Q Consensus 350 ir~L~RKGFs~d~I~~vL~e 369 (376)
|+.|+.-||+.+.+.++|..
T Consensus 8 I~~L~s~Gf~~~~~~rAL~i 27 (46)
T 2oo9_A 8 IENLMSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 56777778887777777653
No 109
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=33.77 E-value=2.7e+02 Score=25.14 Aligned_cols=27 Identities=7% Similarity=0.103 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHcCCccHHHHHHHHH
Q 017157 240 PSHVIEAVITDFQSRGLINDSLYAESYS 267 (376)
Q Consensus 240 sediIe~VLe~L~e~GyLDD~ryAesyv 267 (376)
+.+.+...++.|.+.|+ ++...+....
T Consensus 72 ~~e~l~p~v~~L~~~Gl-s~~~i~~~l~ 98 (270)
T 3m66_A 72 DLENLKTRVAYLHSKNF-SKADVAQMVR 98 (270)
T ss_dssp CHHHHHHHHHHHHHTTC-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 33335555555555553 3444444333
No 110
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=33.76 E-value=25 Score=29.18 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhc---ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 212 AENLAVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 212 A~~~AL~lLsrR---drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..-.+|.+|... ..|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRL---ISRAPDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCEe
Confidence 445577777764 68999999887 689999999999999999996
No 111
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=33.34 E-value=58 Score=27.16 Aligned_cols=43 Identities=9% Similarity=0.270 Sum_probs=36.1
Q ss_pred HHHHHHHHHh--cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr--RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|.+|.. ...|..+|.+.| +++...|-.+|.+|++.|||.
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l---~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAI---GIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH---CCCHhhHHHHHHHHHHCCCEE
Confidence 3456777765 347999999988 599999999999999999996
No 112
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=33.08 E-value=75 Score=25.28 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=33.8
Q ss_pred HHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|.+.|||.
T Consensus 45 ~~iL~~l~~~~~~t~~ela~~l---~~~~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 45 FVALQWLLEEGDLTVGELSNKM---YLACSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CCCchhHHHHHHHHHHCCCee
Confidence 345555554 457889999888 699999999999999999994
No 113
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=33.01 E-value=76 Score=25.24 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=35.0
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 33 q~~iL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 33 LFAVLYTLATEGSRTQKHIGEKW---SLPKQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEe
Confidence 3455566643 458999999988 599999999999999999995
No 114
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=32.80 E-value=78 Score=24.95 Aligned_cols=43 Identities=7% Similarity=0.114 Sum_probs=35.1
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|.+.|||.
T Consensus 35 ~~~iL~~l~~~~~~~~~~la~~l---~~s~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 35 QFDILQKIYFEGPKRPGELSVLL---GVAKSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---CCCchhHHHHHHHHHHCCCee
Confidence 3445556654 467999999988 699999999999999999995
No 115
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=31.37 E-value=1.4e+02 Score=23.97 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
.-.+|..|.. ...|..+|.+.| |++...|-.+|.+|++.|||.=
T Consensus 51 ~~~iL~~l~~~~~~t~~ela~~l---~is~~tvs~~l~~Le~~glv~r 95 (162)
T 2fa5_A 51 EWRVITILALYPGSSASEVSDRT---AMDKVAVSRAVARLLERGFIRR 95 (162)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEee
Confidence 3446666654 568889999987 5999999999999999999963
No 116
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=30.78 E-value=86 Score=24.91 Aligned_cols=42 Identities=7% Similarity=0.215 Sum_probs=34.4
Q ss_pred HHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 215 ~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
.+|..|.. ...|..+|.+.| |++...|-.+|.+|++.|||.=
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l---~~~~~tvs~~l~~Le~~Glv~r 86 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDIL---GLDKAAVSRTVKKLEEKKYIEV 86 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHcCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEEe
Confidence 45555554 467899999888 5999999999999999999963
No 117
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=30.66 E-value=71 Score=25.57 Aligned_cols=42 Identities=10% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 40 ~~iL~~l~~~~~~t~~ela~~l---~~s~~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 40 LFVLASLKKHGSLKVSEIAERM---EVKPSAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEe
Confidence 345666654 457899999988 699999999999999999994
No 118
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=30.45 E-value=65 Score=25.99 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=35.6
Q ss_pred HHHHHHHHHH-hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 212 AENLAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 212 A~~~AL~lLs-rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..-.+|.+|. ....|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 42 ~q~~iL~~l~~~~~~~~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 42 SQYLVMLTLWEENPQTLNSIGRHL---DLSSNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHH---TCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEe
Confidence 3445566665 4567889999988 699999999999999999995
No 119
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=30.26 E-value=49 Score=27.25 Aligned_cols=44 Identities=11% Similarity=0.287 Sum_probs=37.2
Q ss_pred HHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 214 NLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 214 ~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
-..|..|.....+..||.+.|. |+++..+-..|.+|++.|||.-
T Consensus 38 l~IL~~L~~g~~~~~eLa~~l~--gis~~tls~~L~~Le~~GlV~r 81 (131)
T 1yyv_A 38 VLILVALRDGTHRFSDLRRXMG--GVSEXMLAQSLQALEQDGFLNR 81 (131)
T ss_dssp HHHHHHGGGCCEEHHHHHHHST--TCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHhc--cCCHHHHHHHHHHHHHCCcEEE
Confidence 3466777767789999998873 7999999999999999999963
No 120
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.24 E-value=64 Score=25.30 Aligned_cols=43 Identities=7% Similarity=0.254 Sum_probs=34.4
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.++..|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 38 ~~~iL~~l~~~~~~t~~ela~~l---~~s~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 38 QWRVIRILRQQGEMESYQLANQA---CILRPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---CCCHhHHHHHHHHHHHCCCEE
Confidence 3445555654 457889998876 699999999999999999994
No 121
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=30.09 E-value=60 Score=26.62 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=35.6
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 48 q~~iL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 48 QFTALSVLAAKPNLSNAKLAERS---FIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH---TSCGGGHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCcCeE
Confidence 3456666665 567899999988 599999999999999999994
No 122
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=29.22 E-value=80 Score=24.64 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=34.0
Q ss_pred HHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
-.++..|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 41 ~~iL~~l~~~~~~t~~ela~~l---~~~~~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 41 WAALVRLGETGPCPQNQLGRLT---AMDAATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHT---TCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 345566643 467889998876 699999999999999999995
No 123
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=29.21 E-value=39 Score=27.18 Aligned_cols=45 Identities=7% Similarity=0.204 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhc---ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 211 DAENLAVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 211 ~A~~~AL~lLsrR---drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
...-.+|.+|... ..|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 41 ~~q~~vL~~l~~~~~~~~t~~eLa~~l---~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 41 SQQGRMIGYIYENQESGIIQKDLAQFF---GRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHH---CCChhHHHHHHHHHHHCCCEE
Confidence 3345667777764 67889998876 589999999999999999995
No 124
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=29.17 E-value=98 Score=24.18 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=33.0
Q ss_pred HHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.++..|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 38 ~iL~~l~~~~~~~~~~la~~l---~~~~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 38 KVLCSIRCAACITPVELKKVL---SVDLGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHHHHHHHSSBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCHHHHHHHH---CCChHHHHHHHHHHHHCCCEE
Confidence 45555554 456889998776 699999999999999999994
No 125
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=28.90 E-value=68 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=35.1
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 45 ~~~iL~~l~~~~~~t~~ela~~l---~i~~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 45 EWRVLACLVDNDAMMITRLAKLS---LMEQSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHHHSSCSCBCHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCcCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 3456667755 456889998876 699999999999999999995
No 126
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=28.74 E-value=1.1e+02 Score=23.63 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHh-cccCHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCcc
Q 017157 211 DAENLAVKLLAT-RAFTAVEMRKKLNGKKFPSH-VIEAVITDFQSRGLIN 258 (376)
Q Consensus 211 ~A~~~AL~lLsr-RdrS~~ELr~KL~~KG~sed-iIe~VLe~L~e~GyLD 258 (376)
...+..+.+|-. ...|..+|.+.|- ++.. .|...|..|++.|+|.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lg---it~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIG---LTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHC---GGGHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcC---CCcHHHHHHHHHHHHHCCCEE
Confidence 445555666655 4788899988875 8899 9999999999999997
No 127
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=28.61 E-value=1.1e+02 Score=23.42 Aligned_cols=32 Identities=3% Similarity=0.179 Sum_probs=27.7
Q ss_pred ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 224 drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-|..||.+.| |+++..|..-|..|.+.|+|.
T Consensus 24 ~psv~EIa~~l---gvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 24 PVKTRDIADAA---GLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp CEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHH---CCCHHHHHHHHHHHHHCCcEE
Confidence 56788988887 579999999999999999983
No 128
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=28.58 E-value=85 Score=25.00 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=34.8
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|..|.. ...|..+|.+.| |++...|-.+|.+|.+.|||.
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l---~~~~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAAL---QMKRQYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCee
Confidence 3455666654 457889999988 699999999999999999994
No 129
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=28.45 E-value=1.6e+02 Score=23.50 Aligned_cols=44 Identities=5% Similarity=0.061 Sum_probs=34.0
Q ss_pred HHHHHHHHH-hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 213 ENLAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 213 ~~~AL~lLs-rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
....+.++. ....|..+|.+.| |++...|-.+|..|.+.|||.=
T Consensus 10 L~~i~~l~~~~~~~~~~ela~~l---~vs~~tvs~~l~~Le~~Glv~r 54 (142)
T 1on2_A 10 IEQIYMLIEEKGYARVSDIAEAL---AVHPSSVTKMVQKLDKDEYLIY 54 (142)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhhcCCCCHHHHHHHh---CCCHHHHHHHHHHHHHCCCEEE
Confidence 333344443 3567889999877 5999999999999999999963
No 130
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=28.43 E-value=63 Score=25.78 Aligned_cols=43 Identities=2% Similarity=0.203 Sum_probs=34.8
Q ss_pred HHHHHHHHH-hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLs-rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|..|. ....|..+|.+.| ++++..|-.+|.+|++.|||.
T Consensus 38 q~~vL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 38 GYIVLMAIENDEKLNIKKLGERV---FLDSGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHHHHHSCTTCEEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHH---CCChhhHHHHHHHHHHCCCeE
Confidence 345566665 3567889999988 589999999999999999995
No 131
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=28.43 E-value=84 Score=25.21 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=33.8
Q ss_pred HHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 51 ~iL~~l~~~~~~t~~ela~~l---~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 51 LVMLVLWETDERSVSEIGERL---YLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHHHHHSCSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCcCHHHHHHHh---CCCcccHHHHHHHHHHCCCEe
Confidence 45555654 567899999888 599999999999999999995
No 132
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=28.41 E-value=41 Score=30.60 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.2
Q ss_pred cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017157 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGL 256 (376)
Q Consensus 223 RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~Gy 256 (376)
|..++..|+.+|...|++.+.|+.|++..+...|
T Consensus 119 r~~~~~~L~~~L~~~gv~~~~i~~I~~~~~~~~y 152 (194)
T 3lgb_A 119 RDWSHERLSAELRSMKLTQAQIISVLDSCQKGEY 152 (194)
T ss_dssp HHSCHHHHHHHHHHTTCCHHHHHHHHHHHHTTCH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCh
Confidence 4567889999999999999999999998877665
No 133
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=28.14 E-value=83 Score=25.50 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=35.1
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~l---~is~~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIFA---VVEQSTLSRALDGLQADGLVR 97 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH---CCChhHHHHHHHHHHHCCCEE
Confidence 3445666654 457899999988 699999999999999999995
No 134
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=28.11 E-value=80 Score=26.22 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=18.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHhh
Q 017157 281 IKQALFKKGISQTDAKKAVNLV 302 (376)
Q Consensus 281 IrqeLrqKGId~eiIeeALee~ 302 (376)
....|..-||+.+.|.+||-..
T Consensus 79 ~v~~L~eMGF~~~~a~~AL~~~ 100 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVLLLH 100 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHc
Confidence 3456999999999999999875
No 135
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.02 E-value=90 Score=25.65 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=36.3
Q ss_pred hcccCHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCccHHHHHHHHHHh
Q 017157 222 TRAFTAVEMRKKLNGKKF--PSHVIEAVITDFQSRGLINDSLYAESYSRS 269 (376)
Q Consensus 222 rRdrS~~ELr~KL~~KG~--sediIe~VLe~L~e~GyLDD~ryAesyvrs 269 (376)
..+-|..+|++-|..-|+ ++++|+..++-|..++. |...+++.|+.-
T Consensus 23 ~~~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-da~e~VeeWmAF 71 (101)
T 2keb_A 23 SMSASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-NEEGMVGELIAF 71 (101)
T ss_dssp -CCCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-CHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 456789999999998886 56789999999999995 766666655543
No 136
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=27.98 E-value=1.1e+02 Score=24.39 Aligned_cols=41 Identities=17% Similarity=0.387 Sum_probs=33.9
Q ss_pred HHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..+..|.. ...|..+|.+.| |+++..|-..|.+|++.|+|.
T Consensus 8 ~il~~L~~~~~~~~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKL---GISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHH---TSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEe
Confidence 34555643 346899999999 899999999999999999995
No 137
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=26.46 E-value=88 Score=25.26 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=34.2
Q ss_pred HHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 47 ~~iL~~l~~~~~~t~~ela~~l---~is~~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 47 LYAFLYVALFGPKKMKEIAEFL---STTKSNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHT---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 345555654 467899999887 599999999999999999995
No 138
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=26.32 E-value=59 Score=27.56 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 211 DAENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 211 ~A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
..+-..|.+|.....|..+|.+.| |++...|-.-|..|.+.|+|.-
T Consensus 58 p~R~~IL~~L~~~~~t~~eLa~~l---gls~stvs~hL~~L~~aGlV~~ 103 (151)
T 3f6v_A 58 PTRRRLVQLLTSGEQTVNNLAAHF---PASRSAISQHLRVLTEAGLVTP 103 (151)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHTTS---SSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEE
Confidence 456678888988889999998876 7999999999999999999974
No 139
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=26.28 E-value=78 Score=25.87 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=35.0
Q ss_pred HHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~~l---~~~~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLATLG---VMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHT---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 3456666654 567889998876 699999999999999999995
No 140
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=26.21 E-value=1e+02 Score=25.13 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=33.4
Q ss_pred HHHHHHHhc---ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLATR---AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsrR---drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.+|.+|... ..|..+|.+.|. ++...|-.+|.+|++.|||.
T Consensus 39 ~vL~~L~~~~~~~~t~~eLa~~l~---~~~~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 39 EALVLLTFSKSGELPMSKIGERLM---VHPTSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp HHHHHHHTSGGGEEEHHHHHHHHT---CCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHC---CCHHHHHHHHHHHHhCCCEE
Confidence 456666543 368899998885 89999999999999999993
No 141
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=25.81 E-value=1.2e+02 Score=23.44 Aligned_cols=43 Identities=16% Similarity=0.369 Sum_probs=34.9
Q ss_pred HHHHHH-hcccCHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCcc
Q 017157 216 AVKLLA-TRAFTAVEMRKKLNG-KKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 216 AL~lLs-rRdrS~~ELr~KL~~-KG~sediIe~VLe~L~e~GyLD 258 (376)
.|.+|. ....|..+|.+.|.. .+++...|-.+|.+|.+.|||.
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~ 59 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFID 59 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeE
Confidence 344443 467899999999863 4689999999999999999995
No 142
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=25.50 E-value=1.1e+02 Score=25.29 Aligned_cols=41 Identities=7% Similarity=0.183 Sum_probs=30.3
Q ss_pred HHHHHHhccc-CHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 216 AVKLLATRAF-TAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 216 AL~lLsrRdr-S~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
||-+|+.+.- |..+|.+.+ ++++..++.+|..|.+.|+|.-
T Consensus 14 ~L~~La~~~~~s~~~IA~~~---~i~~~~l~kIl~~L~~aGlv~s 55 (145)
T 1xd7_A 14 ILSLISMDEKTSSEIIADSV---NTNPVVVRRMISLLKKADILTS 55 (145)
T ss_dssp HHHHHHTCSCCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHhCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCceEe
Confidence 3444454321 667776665 5999999999999999999964
No 143
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=24.67 E-value=1.2e+02 Score=23.20 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=31.2
Q ss_pred HHHHHHH-hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Q 017157 215 LAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (376)
Q Consensus 215 ~AL~lLs-rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyL 257 (376)
..+.+|. +...+..||.+.| ++++..|..-|+.|.+.|+|
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l---~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTL---NTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHT---TCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHcCCCcHHHHHHHH---CcCHHHHHHHHHHHHHCCCE
Confidence 3455554 3556777877776 59999999999999999987
No 144
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=24.63 E-value=80 Score=25.02 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcccC--HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHH
Q 017157 213 ENLAVKLLATRAFT--AVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSL 261 (376)
Q Consensus 213 ~~~AL~lLsrRdrS--~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~r 261 (376)
.-..+..|.....+ ..||.+.| .|+++..+-..|..|++.|+|.=..
T Consensus 29 rl~IL~~L~~g~~~~~~~eL~~~l--~gis~~~ls~~L~~Le~~GlV~r~~ 77 (111)
T 3df8_A 29 TMLIISVLGNGSTRQNFNDIRSSI--PGISSTILSRRIKDLIDSGLVERRS 77 (111)
T ss_dssp HHHHHHHHTSSSSCBCHHHHHHTS--TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHCCCEEEee
Confidence 34566777777777 99998866 2799999999999999999997443
No 145
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.62 E-value=1.9e+02 Score=22.79 Aligned_cols=45 Identities=4% Similarity=0.180 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhccc-------CHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 211 DAENLAVKLLATRAF-------TAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 211 ~A~~~AL~lLsrRdr-------S~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
++++.....+....+ |..+|.+.| |++...|.+++..|...|+|.
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~---~vSr~tvr~al~~L~~~Gli~ 64 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEY---QINPLTVSKAYQSLLDDNVIE 64 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 344444455544333 777887776 699999999999999999995
No 146
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=24.33 E-value=2e+02 Score=22.65 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHh--cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 211 DAENLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 211 ~A~~~AL~lLsr--RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.+++..|..|.- ....+.+|.+++ |++...|+.+|..|+..|.|-
T Consensus 19 d~eekVLe~LkeaG~PlkageIae~~---GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 19 HLEQRILQVLTEAGSPVKLAQLVKEC---QAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHHHHTSCEEHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHcCCcc
Confidence 345566666655 578889998876 599999999999999988763
No 147
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=24.15 E-value=99 Score=24.34 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=31.4
Q ss_pred HHHHHHH-hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLA-TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLs-rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..+.+|. ....+..+|.+.| ++++..|..-|+.|.+.|+|-
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l---~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARL---QTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHT---TCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHcCCCcHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 3455554 3556777777776 699999999999999999873
No 148
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=23.98 E-value=1.8e+02 Score=23.06 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=30.2
Q ss_pred cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 223 RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
...|..+|.+.| |++...|-.+|..|++.|||.=
T Consensus 30 ~~~s~~ela~~l---~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 30 EGAKINRIAKDL---KIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp SCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHh---CCChHHHHHHHHHHHHCCCEEe
Confidence 456899999988 5999999999999999999963
No 149
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=23.61 E-value=1.3e+02 Score=24.37 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=33.8
Q ss_pred HHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.+|.+|.. ...|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 54 ~vL~~l~~~~~~t~~eLa~~l---~~~~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 54 PFLMRLYREDGINQESLSDYL---KIDKGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHHHHSCSEEHHHHHHHH---TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCCCHHHHHHHH---CCCHHHHHHHHHHHHHCCCEE
Confidence 45556644 457889999888 699999999999999999994
No 150
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=23.55 E-value=1.5e+02 Score=26.08 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
.....+.+|.....|..+|.+.| |+++..|-.-|.+|.+.|+|.-
T Consensus 21 ~~~~IL~~L~~~~~s~~eLA~~l---glS~stv~~~l~~Le~~GlI~~ 65 (192)
T 1uly_A 21 TRRKILKLLRNKEMTISQLSEIL---GKTPQTIYHHIEKLKEAGLVEV 65 (192)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEE
Confidence 34456778877778999999988 6999999999999999999954
No 151
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=23.52 E-value=92 Score=24.94 Aligned_cols=45 Identities=11% Similarity=0.246 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhc--ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 212 AENLAVKLLATR--AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 212 A~~~AL~lLsrR--drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
..-.+|.+|... ..|..+|.+.|. ++...|-.+|.+|++.|||.=
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~---i~~~tvs~~l~~Le~~Glv~r 86 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMG---LDPSQIVGLVDELEERGLVVR 86 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHT---CCHHHHHHHHHHHHTTTSEEC
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHC---CCHhHHHHHHHHHHHCCCEEe
Confidence 344566777643 348999999885 999999999999999999953
No 152
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=23.51 E-value=61 Score=23.96 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=17.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHh
Q 017157 349 IIHWLQYRGFNWCVTSFILKK 369 (376)
Q Consensus 349 lir~L~RKGFs~d~I~~vL~e 369 (376)
-+..|+.-||+.+.+.++|..
T Consensus 10 ~Ia~L~smGfsr~da~~AL~i 30 (56)
T 2juj_A 10 EIENLMSQGYSYQDIQKALVI 30 (56)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHH
Confidence 467788999999999888865
No 153
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=23.50 E-value=4.5e+02 Score=24.72 Aligned_cols=66 Identities=11% Similarity=0.006 Sum_probs=38.2
Q ss_pred HHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHHHHHH
Q 017157 220 LATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAV 299 (376)
Q Consensus 220 LsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiIeeAL 299 (376)
+......+..+-..|...|++...|..+|.++-..=..+... +. -.-..|+.-|++.+.|..++
T Consensus 44 ~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~-----l~-----------p~l~fL~~lG~s~~~i~~il 107 (343)
T 3mva_O 44 FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPEN-----LS-----------KRWDLWRKIVTSDLEIVNIL 107 (343)
T ss_dssp GGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHH-----HH-----------HHHHHHTTTSSCHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHH-----HH-----------HHHHHHHHcCCCHHHHHHHH
Confidence 344444566777777777777777777777664432222221 11 12235677788777777776
Q ss_pred Hh
Q 017157 300 NL 301 (376)
Q Consensus 300 ee 301 (376)
..
T Consensus 108 ~~ 109 (343)
T 3mva_O 108 ER 109 (343)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 154
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=23.45 E-value=3.3e+02 Score=22.92 Aligned_cols=66 Identities=23% Similarity=0.205 Sum_probs=47.1
Q ss_pred HHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHHHHHHHH
Q 017157 220 LATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQTDAKKAV 299 (376)
Q Consensus 220 LsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~eiIeeAL 299 (376)
|.++-.|+.-=|.-|+..||+.-....+++.+.+.|+|.-.. ...+-..+..+|++.-.|-+.+
T Consensus 40 l~~~hTTvSVERtVlr~mGidgvda~~iVd~~~e~gLLgkGA----------------a~~v~~a~~e~g~s~qeaae~l 103 (121)
T 3kp1_E 40 LGKKNTTPSIERSVLLRMGFSSLEAKAIVDKTMDRGLMGKGA----------------GHIVYKIAKEKNISVREAGLAL 103 (121)
T ss_dssp HHHHEECHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCGGGCH----------------HHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHcCCccHHHHHHHHHhCCCccchHHHHHHHHHcccccccH----------------HHHHHHHHHHcCCCHHHHHHHH
Confidence 456667788888899999999988999999999999886521 1123334666777776555554
Q ss_pred Hh
Q 017157 300 NL 301 (376)
Q Consensus 300 ee 301 (376)
..
T Consensus 104 A~ 105 (121)
T 3kp1_E 104 SE 105 (121)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 155
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=22.83 E-value=73 Score=25.37 Aligned_cols=43 Identities=7% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHh---cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 213 ENLAVKLLAT---RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 213 ~~~AL~lLsr---RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.-.+|.+|.. ...|..+|.+.|. ++...+-.+|.+|.+.|||.
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~---~~~~tvs~~l~~Le~~Glv~ 84 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLN---YKQPQVVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSS---SHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHC---CCHHHHHHHHHHHHHCCCEE
Confidence 3456666665 4578889888765 88999999999999999995
No 156
>3l9q_A DNA primase large subunit; POL alpha, DNA replication, polymerase, iron-sulfur DNA-binding, DNA-directed RNA polymerase, iron, iron-sulfur binding; HET: DNA; 1.70A {Homo sapiens} PDB: 3q36_A*
Probab=22.59 E-value=61 Score=29.48 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=29.7
Q ss_pred cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017157 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGL 256 (376)
Q Consensus 223 RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~Gy 256 (376)
|..++..|+++|...|+++..|+.|++..+...|
T Consensus 118 r~~~~~~L~~~L~~~~v~~~~i~~I~~~~~~~~y 151 (195)
T 3l9q_A 118 RHSDPELLKQKLQSYKISPGGISQILDLVKGTHY 151 (195)
T ss_dssp HHSCHHHHHHHHHHTTCCHHHHHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCch
Confidence 5577789999999999999999999999987666
No 157
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=22.58 E-value=1e+02 Score=25.69 Aligned_cols=72 Identities=8% Similarity=0.151 Sum_probs=49.4
Q ss_pred HHHHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhhcCCccHHHHHHHHHhCCCCHH
Q 017157 214 NLAVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWSSASWGPRRIKQALFKKGISQT 293 (376)
Q Consensus 214 ~~AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~~kg~GprkIrqeLrqKGId~e 293 (376)
-..|..|.....+..||.+.|- |+++..+-..|.+|++.|+|.=.. ....|+++...|-.+|.+--
T Consensus 29 l~IL~~L~~g~~rf~eL~~~l~--gIs~~~Ls~~L~~Le~~GLV~R~~------------~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 29 GILFYHMIDGKKRFNEFRRICP--SITQRMLTLQLRELEADGIVHREV------------YHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HHHHHHHTTSCBCHHHHHHHCT--TSCHHHHHHHHHHHHHTTSEEEEE------------ECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHHhcCCcCHHHHHHHhc--ccCHHHHHHHHHHHHHCCCEEEEe------------cCCCCCeEEEEECHhHHHHH
Confidence 3456677778889999998773 799999999999999999996322 12234445556666666543
Q ss_pred HHHHHH
Q 017157 294 DAKKAV 299 (376)
Q Consensus 294 iIeeAL 299 (376)
-+-.+|
T Consensus 95 ~~l~~l 100 (131)
T 4a5n_A 95 PIVLQM 100 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 158
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=22.53 E-value=1.9e+02 Score=23.04 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHh--------cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Q 017157 209 RQDAENLAVKLLAT--------RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (376)
Q Consensus 209 ~~~A~~~AL~lLsr--------RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyL 257 (376)
.+++.+.++..|+. .-.+..+|+.++. ..+++..+..+|+.|.+.|.|
T Consensus 64 ~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~-~~~~~~~~~~ll~~l~~~g~l 119 (135)
T 2v9v_A 64 YQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYF-SRLPARVYQALLEEWSREGRL 119 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHC-TTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhc-ccCCHHHHHHHHHHHHHCCCE
Confidence 45556666666663 5578889999997 457999999999999999866
No 159
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=22.48 E-value=1.4e+02 Score=24.40 Aligned_cols=40 Identities=10% Similarity=0.279 Sum_probs=30.8
Q ss_pred HHHHHHHhcc------cCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Q 017157 215 LAVKLLATRA------FTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (376)
Q Consensus 215 ~AL~lLsrRd------rS~~ELr~KL~~KG~sediIe~VLe~L~e~GyL 257 (376)
.+|.+|...+ .|..+|-+.|. ++...|-.+|.+|++.|||
T Consensus 37 ~vL~~l~~~~~~~~~~~t~~eLa~~l~---~~~~tvsr~v~~Le~~glV 82 (148)
T 4fx0_A 37 STLAVISLSEGSAGIDLTMSELAARIG---VERTTLTRNLEVMRRDGLV 82 (148)
T ss_dssp HHHHHHHC---------CHHHHHHHHT---CCHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHC---CChhhHHHHHHHHHHCCCE
Confidence 3556666543 47788887775 8999999999999999999
No 160
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=22.43 E-value=2e+02 Score=23.30 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 209 RQDAENLAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 209 ~~~A~~~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..+.....+.+|.. ...|..+|.+.| |++...|-.+|..|++.|||.
T Consensus 38 ~~~~~~~i~~~l~~~~~~~~~~la~~l---~vs~~tvs~~l~~Le~~Glv~ 85 (155)
T 2h09_A 38 IDDYVELISDLIREVGEARQVDMAARL---GVSQPTVAKMLKRLATMGLIE 85 (155)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHH---TSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHh---CcCHHHHHHHHHHHHHCCCEE
Confidence 44555555666654 567888888877 599999999999999999995
No 161
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=22.37 E-value=1.5e+02 Score=24.55 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=28.7
Q ss_pred ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHH
Q 017157 224 AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDS 260 (376)
Q Consensus 224 drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ 260 (376)
..|..+|.+.+ ++++..+..++..|.+.|+|.-.
T Consensus 30 ~~~~~~iA~~~---~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 30 LCTSDYMAESV---NTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp GCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CcCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEEEc
Confidence 46777887766 59999999999999999999743
No 162
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=22.25 E-value=3e+02 Score=22.51 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=26.5
Q ss_pred HHHHHHhcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Q 017157 216 AVKLLATRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLI 257 (376)
Q Consensus 216 AL~lLsrRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyL 257 (376)
++.++. ...|..++-+.| |++...|...+.++.+.|.+
T Consensus 34 ii~l~~-~G~s~~~IA~~l---gis~~TV~rwl~r~~~~G~~ 71 (159)
T 2k27_A 34 IVDLAH-QGVRPCDISRQL---RVSHGCVSKILGRYYETGSI 71 (159)
T ss_dssp HHHHHH-HTCCHHHHHHHH---TCCSHHHHHHHCCSSTTSCC
T ss_pred HHHHHH-cCCCHHHHHHHH---CcCHHHHHHHHHHHHhcCCc
Confidence 344442 457888887776 58888888888887766654
No 163
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=22.19 E-value=1.9e+02 Score=23.43 Aligned_cols=42 Identities=17% Similarity=0.390 Sum_probs=34.9
Q ss_pred HHHHHHHHhc-ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 214 NLAVKLLATR-AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 214 ~~AL~lLsrR-drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
...+.+|... ..|..+|.+.| |+++..|-..|.+|++.|+|.
T Consensus 6 ~~il~~L~~~~~~~~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREI---RIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHH---TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCcEE
Confidence 3456677653 46889999988 699999999999999999996
No 164
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=21.94 E-value=1.3e+02 Score=26.64 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHHHhcccCH--HHHHHHHhcCCCCHHHHHHHHHHHHHcCCccH
Q 017157 214 NLAVKLLATRAFTA--VEMRKKLNGKKFPSHVIEAVITDFQSRGLIND 259 (376)
Q Consensus 214 ~~AL~lLsrRdrS~--~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD 259 (376)
-.+++.|.....+. .+|.+.| |++...+-.+|.+|.+.|||.=
T Consensus 12 L~~L~~l~~~~~~~~~~~La~~l---~vs~~tvs~~l~~Le~~GlV~r 56 (230)
T 1fx7_A 12 LRTIYDLEEEGVTPLRARIAERL---DQSGPTVSQTVSRMERDGLLRV 56 (230)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhhcCCCCcHHHHHHHH---CcCHHHHHHHHHHHHHCCCEEE
Confidence 34555565545666 8998887 6999999999999999999964
No 165
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=21.57 E-value=1.9e+02 Score=23.48 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=34.2
Q ss_pred HHHHHHHh-cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLAT-RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsr-RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..+.+|.. ...|..+|.+.| |+++..|-..|.+|.+.|+|.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~l---g~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRA---GLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCCEE
Confidence 45666654 457889999988 699999999999999999994
No 166
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=21.51 E-value=1.2e+02 Score=23.68 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=29.3
Q ss_pred hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 222 TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 222 rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
...-+..+|..++. ++...|..+|..|+..|||-
T Consensus 34 ~~gi~qkeLa~~~~---l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 34 NKGIWSRDVRYKSN---LPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp TTCEEHHHHHHHTT---CCHHHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHHC---CCHHHHHHHHHHHHHCCCEE
Confidence 34688899988765 88999999999999999984
No 167
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=21.38 E-value=3.2e+02 Score=21.90 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhccc-------CHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHhhhh--------cC
Q 017157 210 QDAENLAVKLLATRAF-------TAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDSLYAESYSRSRWS--------SA 274 (376)
Q Consensus 210 ~~A~~~AL~lLsrRdr-------S~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ryAesyvrsr~~--------~k 274 (376)
.++++.....+....+ |..+|.+.| |++...|.+++..|...|+|.-..-.-.||..... .-
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~---~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~~ 92 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKL---AVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKKELA 92 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHH---TCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH---CcCHHHHHHHHHHHHHCCeEEEecCCEEEEecCchhhHHHHHHHH
Confidence 3444455555544333 677887776 69999999999999999998632110011100000 00
Q ss_pred CccHHHHHHHHHhCCCCHHHHHHHHHhh
Q 017157 275 SWGPRRIKQALFKKGISQTDAKKAVNLV 302 (376)
Q Consensus 275 g~GprkIrqeLrqKGId~eiIeeALee~ 302 (376)
...-......+...|++.+.|...++++
T Consensus 93 ~~~le~~~~~~~~~g~~~~ei~~l~~~~ 120 (125)
T 3neu_A 93 DAITERFLEEAKSIGLDDQTAIELLIKR 120 (125)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0001133445667777777777776665
No 168
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=21.37 E-value=68 Score=25.93 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=35.4
Q ss_pred HHHHHHHHHH--hcccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 212 AENLAVKLLA--TRAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 212 A~~~AL~lLs--rRdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
..-.+|.+|. ....|..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l---~i~~~tvs~~l~~Le~~Gli~ 93 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGAL---KVTNGNVSGLVNRLIKDGMVV 93 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHC---SSCCSCHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH---CCChhhHHHHHHHHHHCCCEE
Confidence 3445677773 3467889998876 689999999999999999995
No 169
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=21.29 E-value=1.5e+02 Score=24.31 Aligned_cols=41 Identities=10% Similarity=0.276 Sum_probs=33.3
Q ss_pred HHHHHHHhc--ccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcc
Q 017157 215 LAVKLLATR--AFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLIN 258 (376)
Q Consensus 215 ~AL~lLsrR--drS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLD 258 (376)
.+|.+|... ..+..+|.+.| |++...|-.+|.+|++.|||.
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l---~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAI---GIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHH---TSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCcHHHHHHHH---CcCHHHHHHHHHHHHhCCCeE
Confidence 467777653 35668888877 599999999999999999994
No 170
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=20.92 E-value=1.6e+02 Score=23.18 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=37.9
Q ss_pred cccCHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCccHHHHHHHHHH
Q 017157 223 RAFTAVEMRKKLNGKKFPSHVIEAVITDFQ--SRGLINDSLYAESYSR 268 (376)
Q Consensus 223 RdrS~~ELr~KL~~KG~sediIe~VLe~L~--e~GyLDD~ryAesyvr 268 (376)
---|..||+.-|...|++++.++.++..+- ..|.||=..|+..+..
T Consensus 29 G~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~ 76 (106)
T 1eh2_A 29 GFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFL 76 (106)
T ss_dssp SCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHH
T ss_pred CeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHH
Confidence 446889999999999999999999998874 4589999888766543
No 171
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=20.45 E-value=3.6e+02 Score=23.65 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=35.3
Q ss_pred HHHHHHHHHh--cccCHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCccHH
Q 017157 213 ENLAVKLLAT--RAFTAVEMRKKLNGKKFPSHVIEAVITDFQSRGLINDS 260 (376)
Q Consensus 213 ~~~AL~lLsr--RdrS~~ELr~KL~~KG~sediIe~VLe~L~e~GyLDD~ 260 (376)
|-.++..|.. ...+..+|.+.|. +++..+-.+|.+|.+.|||.=.
T Consensus 7 YL~~I~~l~~~~~~~~~~~lA~~l~---vs~~tvs~~l~~Le~~GlV~r~ 53 (214)
T 3hrs_A 7 YLKCLYELGTRHNKITNKEIAQLMQ---VSPPAVTEMMKKLLAEELLIKD 53 (214)
T ss_dssp HHHHHHHTTSSCSCCCHHHHHHHHT---CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHC---CChhHHHHHHHHHHHCCCEEEe
Confidence 3445555654 3468889988885 9999999999999999999644
Done!