BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017159
         (376 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3S81|A Chain A, Crystal Structure Of Putative Aspartate Racemase From
           Salmonella Typhimurium
 pdb|3S81|B Chain B, Crystal Structure Of Putative Aspartate Racemase From
           Salmonella Typhimurium
 pdb|3S81|C Chain C, Crystal Structure Of Putative Aspartate Racemase From
           Salmonella Typhimurium
 pdb|3S81|D Chain D, Crystal Structure Of Putative Aspartate Racemase From
           Salmonella Typhimurium
          Length = 268

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 26/249 (10%)

Query: 83  NTIGIIGGVSVSSTLNFLGKLV--WYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSK 140
           +TIGI+GG+  ++T + L K V   +++ D +  P             L  +S+  +  +
Sbjct: 27  HTIGILGGMGPAATADMLEKFVELRHASCDQQHIP-------------LIVSSIPDIPDR 73

Query: 141 TVQLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVX 200
           T  L     +  + L      LE AGA CIV+PC+ +H W  D+        + + +   
Sbjct: 74  TACLLSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATL 133

Query: 201 XXXXXXXXXXXXXGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTI 260
                         S   +G+LAT+ATL+ G YQ+K   +G  ++ P+ A  + +++  I
Sbjct: 134 GDIPP---------SARHVGLLATNATLATGLYQKKALARGLTLIQPEDAG-QALVMQAI 183

Query: 261 EALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLK-KCIDPMDALA 319
             L   D   A+ LL   I  L+ R   A+I+G  E+  ++   +  +    ID   +L 
Sbjct: 184 YTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLV 243

Query: 320 RSTVTWARS 328
           R+ + W  S
Sbjct: 244 RAAIRWYES 252


>pdb|1JFL|A Chain A, Crystal Structure Determination Of Aspartate Racemase From
           An Archaea
 pdb|1JFL|B Chain B, Crystal Structure Determination Of Aspartate Racemase From
           An Archaea
          Length = 228

 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 113/249 (45%), Gaps = 30/249 (12%)

Query: 83  NTIGIIGGVSVSSTLNFLGKLVWYS-AKDAEECPPFVVCNDPALNEELFHASVHSLKSKT 141
            TIGI+GG+   +T     ++V  + AK  +E P  ++ N+P + +              
Sbjct: 2   KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPD-------------- 47

Query: 142 VQLDHIRGAVSQNLRHKRAF----LEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE 197
            +  +I G   ++ R +  +    LE+ GA  I+MPC+ +HA+  D+ +   IP + + E
Sbjct: 48  -RTAYILGK-GEDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIE 105

Query: 198 CVXXXXXXXXXXXXXXGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVII 257
                               + G+LAT  T+ +G Y+++    G E++ P +   + V+ 
Sbjct: 106 ETAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMR 157

Query: 258 PTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDA 317
              E +   +++  R LL    ++L  R    +I G  E+  VL +DD L    IDPMD 
Sbjct: 158 GIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD-LKVPLIDPMDV 216

Query: 318 LARSTVTWA 326
           +A   V  A
Sbjct: 217 IAEVAVKVA 225


>pdb|2DX7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
           Racemase Complex With Citric Acid
 pdb|2DX7|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
           Racemase Complex With Citric Acid
          Length = 228

 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 112/249 (44%), Gaps = 30/249 (12%)

Query: 83  NTIGIIGGVSVSSTLNFLGKLVWYS-AKDAEECPPFVVCNDPALNEELFHASVHSLKSKT 141
            TIGI+GG+   +T     ++V  + AK  +E P  ++ N+P + +              
Sbjct: 2   KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPD-------------- 47

Query: 142 VQLDHIRGAVSQNLRHKRAF----LEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE 197
            +  +I G   ++ R +  +    LE+ GA  I+MP + +HA+  D+ +   IP + + E
Sbjct: 48  -RTAYILGK-GEDPRPQLIWTAKRLEECGADFIIMPANTAHAFVEDIRKAIKIPIISMIE 105

Query: 198 CVXXXXXXXXXXXXXXGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVII 257
                               + G+LAT  T+ +G Y+++    G E++ P +   + V+ 
Sbjct: 106 ETAKKVKELGFK--------KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMR 157

Query: 258 PTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDA 317
              E +   +++  R LL    ++L  R    +I G  E+  VL +DD L    IDPMD 
Sbjct: 158 GIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD-LKVPLIDPMDV 216

Query: 318 LARSTVTWA 326
           +A   V  A
Sbjct: 217 IAEVAVKVA 225


>pdb|3S7Z|A Chain A, Crystal Structure Of Putative Aspartate Racemase From
           Salmonella Typhimurium Complexed With Succinate
 pdb|3S7Z|B Chain B, Crystal Structure Of Putative Aspartate Racemase From
           Salmonella Typhimurium Complexed With Succinate
          Length = 268

 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 26/249 (10%)

Query: 83  NTIGIIGGVSVSSTLNFLGKLV--WYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSK 140
           +TIGI+GG   ++T + L K V   +++ D +  P             L  +S+  +  +
Sbjct: 27  HTIGILGGXGPAATADXLEKFVELRHASCDQQHIP-------------LIVSSIPDIPDR 73

Query: 141 TVQLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVX 200
           T  L     +  + L      LE AGA CIV+PC+ +H W  D+        + + +   
Sbjct: 74  TACLLSGGPSPYRYLERYLHXLEDAGAECIVIPCNTAHYWFDDLQNVAKARXISILDATL 133

Query: 201 XXXXXXXXXXXXXGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTI 260
                         S   +G+LAT+ATL+ G YQ+K   +G  ++ P+ A  + ++   I
Sbjct: 134 GDIPP---------SARHVGLLATNATLATGLYQKKALARGLTLIQPEDAG-QALVXQAI 183

Query: 261 EALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLK-KCIDPMDALA 319
             L   D   A+ LL   I  L+ R   A+I G  E+  ++   +  +    ID   +L 
Sbjct: 184 YTLKRGDKTAAQALLLPQIDSLIARGAQAIIXGCTEIPLIVAGHERAIACPXIDSTASLV 243

Query: 320 RSTVTWARS 328
           R+ + W  S
Sbjct: 244 RAAIRWYES 252


>pdb|2ZSK|A Chain A, Crystal Structure Of Ph1733, An Aspartate Racemase
           Homologue, From Pyrococcus Horikoshii Ot3
 pdb|2ZSK|B Chain B, Crystal Structure Of Ph1733, An Aspartate Racemase
           Homologue, From Pyrococcus Horikoshii Ot3
          Length = 226

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 26/224 (11%)

Query: 85  IGIIGGVSVSSTLNFLGKLVWYSAKDAEEC--PPFVVCNDPALNEELFHASVHSLKSKTV 142
           IGIIGG +  STL +  K +  S +  E+   P  ++    ++N + F  +    + +  
Sbjct: 4   IGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIY---SINFKEFFQNPEGWEGRKK 60

Query: 143 QLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVXXX 202
            L +   A           LE+AGA  I    +  H    DV    ++P + + + V   
Sbjct: 61  ILINAAKA-----------LERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEE 109

Query: 203 XXXXXXXXXXXGSGVR-IGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIE 261
                        GVR + +L T  T++A FY + L+ +G EVV+P+    E +     E
Sbjct: 110 ILK---------RGVRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFE 160

Query: 262 ALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDD 305
            L   +++    ++R+  +      +  VI+G  E+   + + D
Sbjct: 161 ELAFGNLKNKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGD 204


>pdb|3OJC|A Chain A, Crystal Structure Of A Putative AspGLU RACEMASE FROM
           YERSINIA PESTIS
 pdb|3OJC|B Chain B, Crystal Structure Of A Putative AspGLU RACEMASE FROM
           YERSINIA PESTIS
 pdb|3OJC|C Chain C, Crystal Structure Of A Putative AspGLU RACEMASE FROM
           YERSINIA PESTIS
 pdb|3OJC|D Chain D, Crystal Structure Of A Putative AspGLU RACEMASE FROM
           YERSINIA PESTIS
          Length = 231

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 162 LEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVXXXXXXXXXXXXXXGSGV-RIG 220
           L+ AGA  IV+  +  H    D+   C +P LH+ +                  G+ +IG
Sbjct: 72  LKHAGAEVIVVCTNTXHKVADDIEAACGLPLLHIADATAVQIKQ---------QGIDKIG 122

Query: 221 VLATDATLSAGFYQEKL-QNQGFEVVLPDKATMEHVIIPTIEALNHRDM-EGARNLLRIG 278
           +L T  T   GFY+ +L +  G EV+ PD    E V     E L    + E +R+  R  
Sbjct: 123 LLGTRYTXEQGFYRGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGIISETSRDAYRRV 182

Query: 279 IQLLLVRAVNAVIIGSDEM 297
           I+ L  + V  +I G  E+
Sbjct: 183 IKKLEAQGVQGIIFGCTEI 201


>pdb|1IU9|A Chain A, Crystal Structure Of The C-Terminal Domain Of Aspartate
           Racemase From Pyrococcus Horikoshii Ot3
          Length = 111

 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 218 RIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRI 277
           + G+LAT  T+ +G Y+++    G E++ P +   + V+    E +   +++  R LL  
Sbjct: 16  KAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLK 75

Query: 278 GIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDP 314
             ++L  R    +I G  E+  VL +DD L    IDP
Sbjct: 76  TAKILEERGAECIIAGCTEVSVVLKQDD-LKVPLIDP 111


>pdb|1B73|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
 pdb|1B74|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
          Length = 254

 Score = 32.7 bits (73), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 160 AFLEQAGARCIVMPCHISHAWHGD-VSEGCSIPFLHVGECVXXXXXXXXXXXXXXGSGVR 218
            FL+  G   IV+ C+ + A+  + + +  ++P   V E                    +
Sbjct: 56  GFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIE-------PGVKEALKKSRNKK 108

Query: 219 IGVLATDATLSAGFYQEKLQNQGFEV 244
           IGV+ T AT+ +G YQ KL+  G +V
Sbjct: 109 IGVIGTPATVKSGAYQRKLEEGGADV 134


>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
           Antagonistically Control The Nuclear Shuttling Of Nfat4
          Length = 386

 Score = 32.0 bits (71), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 23/141 (16%)

Query: 10  LQTPNCPPFFLSTVYINKTLSRTRPILSAVVQSSSLLGQSHESGSLHESRKFPGSAAASL 69
           L TP CP F        +T    RP  +         G S E   L     FP  +  + 
Sbjct: 243 LGTP-CPEFMKKLQPTVRTYVENRPKYA---------GYSFEK--LFPDVLFPADSEHNK 290

Query: 70  LRSKSPDSLLNQANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNE-- 127
           L++     LL++   I     +SV   L      VWY   +AE  PP +   D  L+E  
Sbjct: 291 LKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKI--PDKQLDERE 348

Query: 128 -------ELFHASVHSLKSKT 141
                  EL +  V  L+ +T
Sbjct: 349 HTIEEWKELIYKEVMDLEERT 369


>pdb|2RA1|A Chain A, Crystal Structure Of The N-Terminal Part Of The Bacterial
           S-Layer Protein Sbsc
          Length = 412

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 112 EECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNL 155
           +E    V   D    EEL+H   + LK++TV LD + G  ++ L
Sbjct: 108 QELKAAVDAKDLKKAEELYHKISYELKTRTVILDRVYGQSTREL 151


>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A
           Natural Jnk1 Inhibitor
          Length = 379

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 52/145 (35%), Gaps = 23/145 (15%)

Query: 10  LQTPNCPPFFLSTVYINKTLSRTRPILSAVVQSSSLLGQSHESGSLHESRKFPGSAAASL 69
           L TP CP F        +T    RP  +         G S E   L     FP  +  + 
Sbjct: 241 LGTP-CPEFMKKLQPTVRTYVENRPKYA---------GYSFEK--LFPDVLFPADSEHNA 288

Query: 70  LRSKSPDSLLNQANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNE-- 127
           L++     LL++   I     +SV   L      VWY   +AE  PP +   D  L+E  
Sbjct: 289 LKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPPKI--PDKQLDERE 346

Query: 128 -------ELFHASVHSLKSKTVQLD 145
                  EL +  V  L  +   L+
Sbjct: 347 HTIEEWKELIYKEVMDLPKRPTTLN 371


>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
 pdb|2G01|B Chain B, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
 pdb|2GMX|A Chain A, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
           Inhibitors With Cellular Activity
 pdb|2GMX|B Chain B, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
           Inhibitors With Cellular Activity
 pdb|2H96|A Chain A, Discovery Of Potent, Highly Selective, And Orally
           Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
           Kinase Inhibitors
 pdb|2H96|B Chain B, Discovery Of Potent, Highly Selective, And Orally
           Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
           Kinase Inhibitors
 pdb|2NO3|A Chain A, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
 pdb|2NO3|B Chain B, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
          Length = 370

 Score = 30.0 bits (66), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 10  LQTPNCPPFFLSTVYINKTLSRTRPILSAVVQSSSLLGQSHESGSLHESRKFPGSAAASL 69
           L TP CP F        +T    RP  +         G S E   L     FP  +  + 
Sbjct: 241 LGTP-CPEFMKKLQPTVRTYVENRPKYA---------GYSFEK--LFPDVLFPADSEHNK 288

Query: 70  LRSKSPDSLLNQANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPP 116
           L++     LL++   I     +SV   L      VWY   +AE  PP
Sbjct: 289 LKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPP 335


>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor
          Length = 358

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 10  LQTPNCPPFFLSTVYINKTLSRTRPILSAVVQSSSLLGQSHESGSLHESRKFPGSAAASL 69
           L TP CP F        +T    RP  +         G S E   L     FP  +  + 
Sbjct: 235 LGTP-CPEFMKKLQPTVRTYVENRPKYA---------GYSFEK--LFPDVLFPADSEHNK 282

Query: 70  LRSKSPDSLLNQANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPP 116
           L++     LL++   I     +SV   L      VWY   +AE  PP
Sbjct: 283 LKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPP 329


>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
           Antagonistically Control The Nuclear Shuttling Of Nfat4
          Length = 371

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 10  LQTPNCPPFFLSTVYINKTLSRTRPILSAVVQSSSLLGQSHESGSLHESRKFPGSAAASL 69
           L TP CP F        +T    RP  +         G S E   L     FP  +  + 
Sbjct: 242 LGTP-CPEFMKKLQPTVRTYVENRPKYA---------GYSFEK--LFPDVLFPADSEHNK 289

Query: 70  LRSKSPDSLLNQANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPP 116
           L++     LL++   I     +SV   L      VWY   +AE  PP
Sbjct: 290 LKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPP 336


>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
           The Scaffolding Protein Jip1 And Sp600125
 pdb|1UKI|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
           The Scaffolding Protein Jip1 And Sp600125
          Length = 369

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 10  LQTPNCPPFFLSTVYINKTLSRTRPILSAVVQSSSLLGQSHESGSLHESRKFPGSAAASL 69
           L TP CP F        +T    RP  +         G S E   L     FP  +  + 
Sbjct: 241 LGTP-CPEFMKKLQPTVRTYVENRPKYA---------GYSFEK--LFPDVLFPADSEHNK 288

Query: 70  LRSKSPDSLLNQANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPP 116
           L++     LL++   I     +SV   L      VWY   +AE  PP
Sbjct: 289 LKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPP 335


>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine
           Inhibitor
          Length = 369

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 10  LQTPNCPPFFLSTVYINKTLSRTRPILSAVVQSSSLLGQSHESGSLHESRKFPGSAAASL 69
           L TP CP F        +T    RP  +         G S E   L     FP  +  + 
Sbjct: 246 LGTP-CPEFMKKLQPTVRTYVENRPKYA---------GYSFEK--LFPDVLFPADSEHNK 293

Query: 70  LRSKSPDSLLNQANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPP 116
           L++     LL++   I     +SV   L      VWY   +AE  PP
Sbjct: 294 LKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEAEAPPP 340


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,567,831
Number of Sequences: 62578
Number of extensions: 338058
Number of successful extensions: 725
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 32
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)