BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017159
(376 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29079|RACD_ENTFC Aspartate racemase OS=Enterococcus faecium PE=1 SV=1
Length = 243
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 170 IVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLS 229
IV+ C+ +H + ++ IP LH+ A EL + + R+ +L T+ ++
Sbjct: 80 IVLTCNTAHYFFEELQAATDIPILHMPREAANEL-------VRQHTTGRVAILGTEGSMK 132
Query: 230 AGFYQEKLQNQGFEVVLPDKATME---HVIIPTIEALNHRDMEGARNLLRIGIQLLLVRA 286
AG Y+ +++N GFE V+PD A E ++I I+ +H + E +L ++ L
Sbjct: 133 AGIYEREVKNLGFETVIPDTALQEKINYLIYHEIKESDHLNQELYYEILEEAVERL---N 189
Query: 287 VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSNKKLTL 334
VI+G E+ + + ID LA T+ A + + L
Sbjct: 190 CEKVILGCTELSLMNEFAEDNHYPVIDAQSILADRTIERALAERNEAL 237
>sp|P32968|YPNL_PECCC Uncharacterized protein in pnlA 3'region (Fragment)
OS=Pectobacterium carotovorum subsp. carotovorum PE=3
SV=1
Length = 150
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 14/149 (9%)
Query: 180 WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQN 239
W D+ + C + + + + +K A + R+G+LAT AT+ A YQ+ L
Sbjct: 1 WFNDLKQQCRAEMISIIDVTCQAIKHA--------NTTRVGLLATTATVKARIYQDNLIT 52
Query: 240 QGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQG 299
+ PD A +H ++ +I A D+ GA +LL LL V +I+G E+
Sbjct: 53 DNIDCYTPDDAD-QHQVMESIYAYKSGDIAGAYSLLSPVKDRLLQAGVEKIILGCTELPL 111
Query: 300 VLPKD---DPLLKKCIDPMDALARSTVTW 325
+L ++ P + +D + L + TV W
Sbjct: 112 ILEQEVRTSP--QHYVDATEELIKKTVEW 138
>sp|H8L901|RACD_ENTFU Aspartate racemase OS=Enterococcus faecium (strain Aus0004)
GN=EFAU004_01689 PE=1 SV=1
Length = 243
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 170 IVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLS 229
IV+ C+ +H + ++ IP LH+ A EL + + R+ +L T+ ++
Sbjct: 80 IVLTCNTAHYFFEELQAATDIPILHMPREAANEL-------VRQHTTGRVAILGTEGSMK 132
Query: 230 AGFYQEKLQNQGFEVVLPDKATME---HVIIPTIEALNHRDMEGARNLLRIGIQLLLVRA 286
AG Y+ +++N GFE V+PD A E ++I I+ ++ + E +L ++ L
Sbjct: 133 AGIYEREVKNLGFETVIPDTALQEKINYLIYHEIKESDYLNQELYYEILEEAVERL---N 189
Query: 287 VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSNK 330
VI+G E+ + + ID LA T+ A + +
Sbjct: 190 CEKVILGCTELSLMHEFAEDNHYPVIDAQSILADRTIERALAER 233
>sp|P32960|RACX_BACSU Probable amino-acid racemase OS=Bacillus subtilis (strain 168)
GN=racX PE=2 SV=2
Length = 227
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 34/172 (19%)
Query: 85 IGIIGGVSVSSTLNFLGKLV-----WYSAKDAEECPPFVVCNDPALNEELFHASV---HS 136
IGI+ G+ ST F+ K++ Y A + + P ++ + P F+A H
Sbjct: 2 IGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTP----FYADRPIDHD 57
Query: 137 LKSKTVQLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196
K + I GAV LE+ G I +PC+ +H ++ ++ + S+P LH+
Sbjct: 58 EMKKAI----IDGAVK---------LEKTGVDFIALPCNTAHVYYEEIQQALSVPMLHIV 104
Query: 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPD 248
E KE+ P A V VL T+ T+ + YQ+ L+ G EV+ D
Sbjct: 105 EETIKEI------PHPAKKAV---VLGTEPTIQSAIYQKVLKGNGQEVIHKD 147
>sp|B1XPV8|MURI_SYNP2 Glutamate racemase OS=Synechococcus sp. (strain ATCC 27264 / PCC
7002 / PR-6) GN=murI PE=3 SV=1
Length = 279
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 153 QNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLE 212
Q +R ++E G + +VM C+ S A DV + E K L +
Sbjct: 55 QYVREILTWMEAQGVKMVVMACNTSSAIALDV--------------IRSEFKTPVLGLIL 100
Query: 213 AGS------GVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHR 266
G+ G RIGV+AT AT+++G Y+ + E + E V P IEA N
Sbjct: 101 PGARGAVSQGKRIGVIATQATVNSGAYENAILEANPEAAVWQMPCPEFV--PLIEA-NRI 157
Query: 267 DMEGARNLLRIGIQLLLVRAVNAVIIGSD---EMQGVLPKDDPLLKKCIDPMDALARST 322
+ + +++ +Q LL + ++ ++ G + GV+ P C+DP + + +T
Sbjct: 158 NDPHTKRIVQKRLQPLLEQGIDTLVYGCTHYRHLSGVIQSILPSHVICVDPAEYVVSAT 216
>sp|P03813|YGEA_ECOLI Uncharacterized protein YgeA OS=Escherichia coli (strain K12)
GN=ygeA PE=1 SV=1
Length = 230
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 40/238 (16%)
Query: 83 NTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEEL--FHAS---VHSL 137
TIG++GG+S ST+ P+ + + + L H++ +HS+
Sbjct: 2 KTIGLLGGMSWESTI------------------PYYRLINEGIKQRLGGLHSAQVLLHSV 43
Query: 138 KSKTVQLDHIRGAVSQN---LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLH 194
++ RG + L L++AGA IV+ + H + C++PFLH
Sbjct: 44 DFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFLH 103
Query: 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ-GFEVVLP---DKA 250
+ + + + A + R+ +L T T+ FY+ +L Q ++P ++A
Sbjct: 104 IADATGRAITGAGM--------TRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERA 155
Query: 251 TMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLL 308
+ +I E + E +R I L + VI G E+ ++P++ +L
Sbjct: 156 KINQIIFE--ELCLGQFTEASRAYCAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVL 211
>sp|Q3AFA8|MURI_CARHZ Glutamate racemase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=murI PE=3 SV=1
Length = 265
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 36/185 (19%)
Query: 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAG--SGVR 218
F + G + +V C+ S A ++P L V L E L+PL + +
Sbjct: 62 FFLKLGVKMVVFACNTSSA--------ITLPILKERYPV---LMEGMLEPLRKNMPAKAK 110
Query: 219 IGVLATDATLSAGFYQEKLQ--NQGFEVVLPDKATMEHVIIPTIEA--LNHRDMEGARNL 274
+GVLAT+AT+ +G YQ+KL N+ EV + A ++V P IE ++ +++E A
Sbjct: 111 VGVLATEATVKSGLYQKKLMETNKFQEVYMI--ACPQYV--PLIEKGIVSGKEVEEAT-- 164
Query: 275 LRIGIQLLLVRAVNAVIIG-------SDEMQGVLPKDDPLLKKCIDPMDALARSTVTWAR 327
R + LL V V++G ++ +Q + PK + IDP +AR +
Sbjct: 165 -REYFEPLLKEEVRDVVLGCTHYPFLTETIQKLYPKI-----QVIDPAAYVAREVYRKLK 218
Query: 328 SNKKL 332
NK L
Sbjct: 219 ENKLL 223
>sp|O66662|MURI_AQUAE Glutamate racemase OS=Aquifex aeolicus (strain VF5) GN=murI PE=3
SV=1
Length = 254
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 161 FLEQAGARCIVMPCHISHAWH-GDVSEGCSIPFLHVGECVAKE-LKEAKLKPLEAGSGVR 218
FL+ G +V+ C+ + A+ ++ P V E KE L+++K K R
Sbjct: 57 FLKDKGVDLLVVACNTASAYALEELKREFPFPVFGVIEPGVKEALRKSKTK--------R 108
Query: 219 IGVLATDATLSAGFYQEKLQNQGFEV 244
IGV+ T AT+ +G YQE L+ G EV
Sbjct: 109 IGVIGTQATIKSGAYQEALKRAGAEV 134
>sp|C0MGG5|MURI_STRS7 Glutamate racemase OS=Streptococcus equi subsp. zooepidemicus
(strain H70) GN=murI PE=3 SV=1
Length = 264
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 161 FLEQAGARCIVMPCHISHA--WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVR 218
FL + IV C+ + A W +V E IP L V + ++A SG +
Sbjct: 60 FLLTKHVKMIVFACNTATAVAWE-EVKEALDIPVLGV-------ILPGASAAIKATSGGK 111
Query: 219 IGVLATDATLSAGFYQEKLQ 238
+GV+ T T+S+G YQEK+Q
Sbjct: 112 VGVIGTSMTISSGIYQEKIQ 131
>sp|C0M7R0|MURI_STRE4 Glutamate racemase OS=Streptococcus equi subsp. equi (strain 4047)
GN=murI PE=3 SV=1
Length = 264
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 161 FLEQAGARCIVMPCHISHA--WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVR 218
FL + IV C+ + A W +V E IP L V + ++A SG +
Sbjct: 60 FLLTKHVKMIVFACNTATAVAWE-EVKEALDIPVLGV-------ILPGASAAIKATSGGK 111
Query: 219 IGVLATDATLSAGFYQEKLQ 238
+GV+ T T+S+G YQEK+Q
Sbjct: 112 VGVIGTSMTISSGIYQEKIQ 131
>sp|P56868|MURI_AQUPY Glutamate racemase OS=Aquifex pyrophilus GN=murI PE=1 SV=1
Length = 254
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 160 AFLEQAGARCIVMPCHISHAWHGD-VSEGCSIPFLHVGECVAKE-LKEAKLKPLEAGSGV 217
FL+ G IV+ C+ + A+ + + + ++P V E KE LK+++ K
Sbjct: 56 GFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKSRNK-------- 107
Query: 218 RIGVLATDATLSAGFYQEKLQNQGFEV 244
+IGV+ T AT+ +G YQ KL+ G +V
Sbjct: 108 KIGVIGTPATVKSGAYQRKLEEGGADV 134
>sp|Q1IEW8|MURI_PSEE4 Glutamate racemase OS=Pseudomonas entomophila (strain L48) GN=murI
PE=3 SV=1
Length = 265
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 29/157 (18%)
Query: 145 DHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELK 204
D+IR Q LRH FL + GA+ +V+ C+ + V+ + L+ +
Sbjct: 50 DYIR----QRLRHIAGFLREQGAKAMVLACNTAT-----VATVADLRALYPDWPLVG--M 98
Query: 205 EAKLKPLEAG--SGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPT--- 259
E +KP A SGV +GVLAT T LQ+ F +L A+ VI
Sbjct: 99 EPAVKPAAAATRSGV-VGVLATTGT---------LQSAKFAALLDRFASDVRVITQPCPG 148
Query: 260 -IEALNHRDME--GARNLLRIGIQLLLVRAVNAVIIG 293
+E + D+ R LL +Q LL + + +I+G
Sbjct: 149 LVECIEAGDLTSPALRQLLAGYVQPLLAQGCDTLILG 185
>sp|Q3AKJ1|MURI_SYNSC Glutamate racemase OS=Synechococcus sp. (strain CC9605) GN=murI
PE=3 SV=1
Length = 265
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 27/131 (20%)
Query: 170 IVMPCHISHAWHGDVSEG-CSIPFLH-VGECVAKELKEAKLKPLEAGSGVRIGVLATDAT 227
+VM C+ ++A DV++G P + +G A + E + R+GVLAT AT
Sbjct: 69 VVMACNTTNALARDVADGQAGAPVIGLIG--AAAAMVETR----------RVGVLATPAT 116
Query: 228 LSAGFYQEKLQNQGFEVVLPDKATMEH---VIIPTIEA--LNHRDMEGARNLLRIGIQLL 282
+++ Y+ + E + P +E +P IE+ +N D+ R + ++ L
Sbjct: 117 VASSAYRASI-----EALHPGSMVIEQACPAFVPLIESGDMNSDDL---RRAAQAYLEPL 168
Query: 283 LVRAVNAVIIG 293
L +V ++++G
Sbjct: 169 LAASVESIVLG 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,194,792
Number of Sequences: 539616
Number of extensions: 4961672
Number of successful extensions: 12273
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 12251
Number of HSP's gapped (non-prelim): 30
length of query: 376
length of database: 191,569,459
effective HSP length: 119
effective length of query: 257
effective length of database: 127,355,155
effective search space: 32730274835
effective search space used: 32730274835
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)