Query 017159
Match_columns 376
No_of_seqs 231 out of 1692
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:07:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1794 RacX Aspartate racemas 100.0 5E-56 1.1E-60 408.4 21.1 226 82-328 1-229 (230)
2 PRK10200 putative racemase; Pr 100.0 5.1E-53 1.1E-57 397.8 23.8 225 82-327 1-229 (230)
3 TIGR00035 asp_race aspartate r 100.0 2E-52 4.4E-57 393.0 24.1 226 82-328 1-228 (229)
4 TIGR00067 glut_race glutamate 100.0 7.5E-39 1.6E-43 305.2 21.7 236 85-365 1-250 (251)
5 PRK00865 glutamate racemase; P 100.0 1.2E-35 2.6E-40 284.7 22.2 238 82-365 5-255 (261)
6 COG0796 MurI Glutamate racemas 100.0 4.8E-35 1.1E-39 278.2 19.9 247 82-371 5-262 (269)
7 PF01177 Asp_Glu_race: Asp/Glu 99.9 8.9E-26 1.9E-30 208.2 12.3 203 88-323 1-216 (216)
8 PRK07475 hypothetical protein; 99.9 8.2E-23 1.8E-27 194.3 13.0 163 149-321 61-232 (245)
9 COG4126 Hydantoin racemase [Am 99.4 9.4E-12 2E-16 115.0 14.6 154 158-327 61-216 (230)
10 TIGR02990 ectoine_eutA ectoine 99.0 2.8E-09 6E-14 101.4 10.8 161 151-330 55-228 (239)
11 PRK10481 hypothetical protein; 99.0 4.9E-09 1.1E-13 98.6 12.0 148 149-324 73-222 (224)
12 COG3473 Maleate cis-trans isom 98.8 3.1E-08 6.7E-13 91.2 9.8 165 150-332 51-228 (238)
13 PF07302 AroM: AroM protein; 97.3 0.016 3.5E-07 54.6 16.0 145 149-325 70-219 (221)
14 PRK00865 glutamate racemase; P 96.1 0.058 1.2E-06 51.9 10.9 108 81-205 109-218 (261)
15 COG1609 PurR Transcriptional r 94.9 2.3 5E-05 42.2 17.9 210 81-330 57-307 (333)
16 TIGR00035 asp_race aspartate r 94.9 0.23 4.9E-06 46.8 10.2 110 81-206 116-225 (229)
17 TIGR00067 glut_race glutamate 94.5 0.48 1E-05 45.4 11.4 57 149-205 155-213 (251)
18 COG1794 RacX Aspartate racemas 94.5 0.1 2.2E-06 49.3 6.5 65 261-325 50-115 (230)
19 PF01177 Asp_Glu_race: Asp/Glu 93.8 0.18 3.8E-06 46.2 6.8 54 150-203 158-215 (216)
20 PRK10481 hypothetical protein; 93.8 0.15 3.1E-06 48.4 6.2 51 155-205 171-222 (224)
21 COG4126 Hydantoin racemase [Am 92.9 0.23 4.9E-06 46.8 5.9 49 157-205 165-213 (230)
22 PF06506 PrpR_N: Propionate ca 92.8 0.93 2E-05 40.9 9.6 138 157-329 24-166 (176)
23 PF00532 Peripla_BP_1: Peripla 92.4 7.1 0.00015 37.5 15.9 77 158-243 48-151 (279)
24 TIGR00222 panB 3-methyl-2-oxob 92.4 0.28 6E-06 47.5 5.9 44 152-196 159-202 (263)
25 cd06326 PBP1_STKc_like Type I 91.8 9.1 0.0002 36.8 15.9 78 159-245 60-168 (336)
26 PRK11303 DNA-binding transcrip 91.6 13 0.00029 35.7 17.0 159 159-329 110-307 (328)
27 cd06557 KPHMT-like Ketopantoat 91.4 0.4 8.7E-06 46.2 5.8 44 152-196 157-200 (254)
28 PLN02424 ketopantoate hydroxym 91.2 0.41 8.8E-06 47.8 5.7 46 150-196 179-224 (332)
29 PRK04452 acetyl-CoA decarbonyl 91.1 3.9 8.4E-05 40.8 12.5 32 163-194 86-130 (319)
30 PRK10200 putative racemase; Pr 91.1 0.9 2E-05 42.9 7.8 102 218-323 3-113 (230)
31 cd06280 PBP1_LacI_like_4 Ligan 90.8 12 0.00027 34.5 15.3 158 159-329 48-241 (263)
32 PRK00311 panB 3-methyl-2-oxobu 90.8 0.49 1.1E-05 45.9 5.8 44 152-196 160-203 (264)
33 COG0796 MurI Glutamate racemas 90.6 1.5 3.1E-05 42.7 8.7 105 79-206 107-219 (269)
34 PRK07475 hypothetical protein; 90.5 0.73 1.6E-05 44.0 6.7 52 149-200 177-230 (245)
35 cd06339 PBP1_YraM_LppC_lipopro 90.2 7.9 0.00017 38.0 14.0 40 199-246 115-157 (336)
36 cd06320 PBP1_allose_binding Pe 89.8 12 0.00026 34.8 14.3 162 158-329 49-252 (275)
37 PF07302 AroM: AroM protein; 89.7 0.98 2.1E-05 42.7 6.7 50 155-204 167-217 (221)
38 TIGR02990 ectoine_eutA ectoine 89.5 0.76 1.6E-05 43.9 5.8 50 156-205 171-222 (239)
39 cd06277 PBP1_LacI_like_1 Ligan 89.5 14 0.00029 34.3 14.3 76 160-244 52-151 (268)
40 cd06286 PBP1_CcpB_like Ligand- 88.8 19 0.00041 33.0 16.4 158 159-329 48-242 (260)
41 PRK10727 DNA-binding transcrip 88.3 26 0.00056 34.0 16.4 156 160-328 109-305 (343)
42 cd06295 PBP1_CelR Ligand bindi 88.1 22 0.00048 33.0 15.7 157 160-328 58-254 (275)
43 cd06337 PBP1_ABC_ligand_bindin 88.1 10 0.00022 37.4 13.2 38 158-195 60-99 (357)
44 TIGR03288 CoB_CoM_SS_B CoB--Co 88.0 7.6 0.00016 37.7 11.9 168 149-322 53-267 (290)
45 PF13344 Hydrolase_6: Haloacid 87.8 5.1 0.00011 32.8 9.0 75 155-243 19-101 (101)
46 PRK06259 succinate dehydrogena 87.7 11 0.00023 39.5 13.6 162 149-321 313-485 (486)
47 PRK09526 lacI lac repressor; R 87.7 28 0.0006 33.6 16.9 158 159-328 113-308 (342)
48 PRK10014 DNA-binding transcrip 87.6 28 0.00061 33.6 16.6 157 160-328 114-320 (342)
49 cd06325 PBP1_ABC_uncharacteriz 87.5 16 0.00034 33.9 13.4 78 159-246 53-165 (281)
50 PF05621 TniB: Bacterial TniB 87.0 26 0.00056 34.8 14.8 197 81-290 60-277 (302)
51 cd06331 PBP1_AmiC_like Type I 86.8 7.6 0.00016 37.7 11.2 81 158-246 58-165 (333)
52 PRK09492 treR trehalose repres 86.8 29 0.00064 33.0 15.8 157 160-329 112-298 (315)
53 PRK10423 transcriptional repre 86.6 31 0.00066 33.1 16.6 158 160-328 106-303 (327)
54 TIGR02317 prpB methylisocitrat 86.6 3.7 8E-05 40.3 8.7 105 82-209 113-224 (285)
55 cd04509 PBP1_ABC_transporter_G 86.6 14 0.0003 34.0 12.4 79 159-245 59-168 (299)
56 TIGR02417 fruct_sucro_rep D-fr 86.6 31 0.00068 33.1 16.5 159 159-329 109-306 (327)
57 cd06332 PBP1_aromatic_compound 86.1 26 0.00056 33.5 14.4 37 158-195 56-95 (333)
58 cd06345 PBP1_ABC_ligand_bindin 86.0 10 0.00022 36.9 11.7 62 217-296 145-209 (344)
59 TIGR03407 urea_ABC_UrtA urea A 85.9 38 0.00082 33.4 16.5 62 217-296 135-199 (359)
60 cd06268 PBP1_ABC_transporter_L 85.8 18 0.00039 33.2 12.7 79 159-245 59-167 (298)
61 cd01391 Periplasmic_Binding_Pr 85.3 22 0.00047 31.6 12.7 41 197-245 113-157 (269)
62 TIGR02319 CPEP_Pphonmut carbox 85.1 6 0.00013 39.0 9.4 105 82-209 117-228 (294)
63 PRK10703 DNA-binding transcrip 85.0 38 0.00083 32.7 20.5 158 160-328 109-307 (341)
64 cd06341 PBP1_ABC_ligand_bindin 84.9 15 0.00032 35.6 12.2 79 159-245 59-165 (341)
65 cd06336 PBP1_ABC_ligand_bindin 84.8 9.1 0.0002 37.5 10.7 23 275-297 182-204 (347)
66 cd06317 PBP1_ABC_sugar_binding 84.7 32 0.0007 31.6 14.7 35 159-194 49-86 (275)
67 cd06360 PBP1_alkylbenzenes_lik 84.3 23 0.0005 34.0 13.1 110 159-295 57-198 (336)
68 TIGR01481 ccpA catabolite cont 84.2 40 0.00088 32.3 18.6 158 160-329 109-305 (329)
69 COG0683 LivK ABC-type branched 84.1 17 0.00036 36.4 12.4 115 161-300 73-217 (366)
70 cd06322 PBP1_ABC_sugar_binding 83.9 35 0.00076 31.4 13.9 160 160-329 49-249 (267)
71 cd06366 PBP1_GABAb_receptor Li 83.8 15 0.00032 35.8 11.6 109 164-296 64-202 (350)
72 cd06346 PBP1_ABC_ligand_bindin 83.7 18 0.00039 34.8 12.1 112 159-296 59-202 (312)
73 PRK14987 gluconate operon tran 83.3 45 0.00097 32.1 16.9 158 160-328 113-307 (331)
74 cd06356 PBP1_Amide_Urea_BP_lik 83.1 47 0.001 32.3 16.5 109 159-293 59-194 (334)
75 COG2048 HdrB Heterodisulfide r 83.0 2 4.3E-05 42.3 5.0 77 149-235 205-289 (293)
76 cd06289 PBP1_MalI_like Ligand- 82.7 38 0.00083 30.9 16.2 160 159-329 48-247 (268)
77 cd06368 PBP1_iGluR_non_NMDA_li 82.3 19 0.00041 34.5 11.6 36 160-195 56-92 (324)
78 TIGR00007 phosphoribosylformim 82.1 12 0.00025 34.9 9.7 123 156-293 31-165 (230)
79 cd06333 PBP1_ABC-type_HAAT_lik 82.1 25 0.00054 33.6 12.3 77 160-245 59-165 (312)
80 PRK11320 prpB 2-methylisocitra 81.2 9 0.0002 37.7 8.9 105 82-209 118-229 (292)
81 cd06342 PBP1_ABC_LIVBP_like Ty 80.8 33 0.00073 32.8 12.8 37 159-195 59-96 (334)
82 cd06275 PBP1_PurR Ligand-bindi 80.6 46 0.001 30.5 16.7 78 159-244 48-150 (269)
83 TIGR02329 propionate_PrpR prop 80.5 29 0.00064 37.0 13.1 100 160-292 48-151 (526)
84 TIGR02405 trehalos_R_Ecol treh 80.4 56 0.0012 31.3 17.6 123 196-329 160-295 (311)
85 cd06298 PBP1_CcpA_like Ligand- 80.2 48 0.001 30.4 16.4 76 160-244 49-150 (268)
86 PF13458 Peripla_BP_6: Peripla 80.2 13 0.00028 35.7 9.7 115 158-297 60-201 (343)
87 cd06338 PBP1_ABC_ligand_bindin 79.8 24 0.00053 34.1 11.5 23 275-297 185-207 (345)
88 cd06271 PBP1_AglR_RafR_like Li 79.7 49 0.0011 30.2 15.5 155 162-328 55-249 (268)
89 cd06285 PBP1_LacI_like_7 Ligan 79.4 52 0.0011 30.3 16.6 159 159-329 48-244 (265)
90 PRK10936 TMAO reductase system 79.1 24 0.00053 34.7 11.4 135 81-245 45-206 (343)
91 cd06556 ICL_KPHMT Members of t 79.0 4 8.6E-05 39.1 5.5 41 155-196 158-198 (240)
92 cd06279 PBP1_LacI_like_3 Ligan 78.6 58 0.0013 30.5 15.9 75 160-243 50-165 (283)
93 cd06380 PBP1_iGluR_AMPA N-term 78.6 27 0.00058 34.6 11.6 40 155-195 52-92 (382)
94 cd01543 PBP1_XylR Ligand-bindi 78.3 56 0.0012 30.1 14.8 157 161-328 45-240 (265)
95 cd06327 PBP1_SBP_like_1 Peripl 78.0 20 0.00044 34.6 10.4 24 275-298 179-202 (334)
96 cd06323 PBP1_ribose_binding Pe 77.9 56 0.0012 29.8 14.2 160 160-329 49-250 (268)
97 PRK15424 propionate catabolism 77.4 28 0.0006 37.3 11.8 101 160-293 58-162 (538)
98 COG0041 PurE Phosphoribosylcar 77.2 16 0.00035 32.7 8.3 84 83-196 3-87 (162)
99 cd06348 PBP1_ABC_ligand_bindin 76.8 22 0.00049 34.5 10.3 22 275-296 181-202 (344)
100 cd06299 PBP1_LacI_like_13 Liga 76.3 62 0.0014 29.6 15.7 158 159-328 48-243 (265)
101 PF02548 Pantoate_transf: Keto 76.0 5.6 0.00012 38.6 5.5 46 150-196 159-204 (261)
102 TIGR03669 urea_ABC_arch urea A 75.9 91 0.002 31.3 16.3 110 159-294 60-196 (374)
103 cd06334 PBP1_ABC_ligand_bindin 75.9 26 0.00057 34.6 10.6 31 216-246 140-173 (351)
104 PRK01710 murD UDP-N-acetylmura 75.5 12 0.00027 38.6 8.4 69 165-245 76-147 (458)
105 cd06335 PBP1_ABC_ligand_bindin 75.2 26 0.00056 34.3 10.3 30 217-246 139-171 (347)
106 cd06312 PBP1_ABC_sugar_binding 74.8 71 0.0015 29.5 14.3 77 159-244 50-158 (271)
107 cd04732 HisA HisA. Phosphorib 74.6 22 0.00047 32.9 9.1 122 157-293 33-166 (234)
108 cd00377 ICL_PEPM Members of th 74.5 12 0.00025 35.7 7.3 93 82-194 109-201 (243)
109 cd01536 PBP1_ABC_sugar_binding 74.4 67 0.0015 29.1 17.2 112 217-329 122-251 (267)
110 cd06379 PBP1_iGluR_NMDA_NR1 N- 74.2 48 0.001 32.8 12.0 26 217-242 155-183 (377)
111 cd01575 PBP1_GntR Ligand-bindi 74.1 70 0.0015 29.2 16.6 159 158-328 47-245 (268)
112 cd06330 PBP1_Arsenic_SBP_like 73.8 38 0.00083 32.8 11.0 36 159-194 59-96 (346)
113 cd06350 PBP1_GPCR_family_C_lik 73.4 47 0.001 32.1 11.5 24 274-297 205-228 (348)
114 PRK02006 murD UDP-N-acetylmura 72.8 65 0.0014 33.7 13.1 78 166-247 69-153 (498)
115 cd06296 PBP1_CatR_like Ligand- 72.6 78 0.0017 29.0 16.1 158 159-328 48-246 (270)
116 cd06355 PBP1_FmdD_like Peripla 72.6 49 0.0011 32.5 11.5 62 216-295 133-197 (348)
117 cd06389 PBP1_iGluR_AMPA_GluR2 72.4 33 0.00071 34.4 10.4 77 160-245 51-149 (370)
118 PRK10339 DNA-binding transcrip 72.4 94 0.002 29.9 14.4 122 197-328 163-302 (327)
119 cd06367 PBP1_iGluR_NMDA N-term 72.2 26 0.00056 34.4 9.5 41 155-195 52-96 (362)
120 COG0821 gcpE 1-hydroxy-2-methy 72.1 7.5 0.00016 39.0 5.4 39 156-194 39-79 (361)
121 cd06321 PBP1_ABC_sugar_binding 72.1 82 0.0018 29.0 14.2 75 160-243 51-153 (271)
122 cd01537 PBP1_Repressors_Sugar_ 71.8 75 0.0016 28.5 15.6 74 159-241 48-148 (264)
123 COG0413 PanB Ketopantoate hydr 71.5 9.3 0.0002 37.0 5.8 47 149-196 157-203 (268)
124 TIGR03288 CoB_CoM_SS_B CoB--Co 71.3 11 0.00025 36.4 6.6 54 150-203 206-267 (290)
125 cd06382 PBP1_iGluR_Kainate N-t 71.3 47 0.001 32.0 10.9 35 161-195 58-93 (327)
126 PRK03369 murD UDP-N-acetylmura 71.1 33 0.00072 35.9 10.4 77 166-247 70-149 (488)
127 cd01542 PBP1_TreR_like Ligand- 70.9 83 0.0018 28.6 15.6 74 160-242 49-146 (259)
128 cd06270 PBP1_GalS_like Ligand 70.5 88 0.0019 28.7 16.2 159 159-329 48-246 (268)
129 cd06267 PBP1_LacI_sugar_bindin 70.5 81 0.0018 28.3 16.4 75 159-242 48-147 (264)
130 cd06287 PBP1_LacI_like_8 Ligan 70.1 97 0.0021 29.0 14.6 122 197-328 107-246 (269)
131 PRK00421 murC UDP-N-acetylmura 69.9 18 0.00039 37.4 8.1 67 166-243 66-135 (461)
132 TIGR00735 hisF imidazoleglycer 68.8 46 0.00099 31.7 10.0 128 156-292 33-174 (254)
133 cd06281 PBP1_LacI_like_5 Ligan 68.7 97 0.0021 28.5 15.0 76 160-244 49-149 (269)
134 cd06347 PBP1_ABC_ligand_bindin 68.2 45 0.00098 31.8 10.0 22 275-296 180-201 (334)
135 PRK11274 glcF glycolate oxidas 67.3 1.5E+02 0.0032 30.0 15.8 166 150-322 220-405 (407)
136 PRK04690 murD UDP-N-acetylmura 66.9 43 0.00092 34.9 10.1 75 166-247 69-147 (468)
137 cd06273 PBP1_GntR_like_1 This 66.6 1E+02 0.0023 28.1 16.6 76 160-244 49-150 (268)
138 cd01545 PBP1_SalR Ligand-bindi 66.2 1.1E+02 0.0023 28.0 16.4 160 159-329 49-248 (270)
139 cd06292 PBP1_LacI_like_10 Liga 66.1 1.1E+02 0.0024 28.1 16.0 158 159-329 48-250 (273)
140 PRK15063 isocitrate lyase; Pro 65.7 52 0.0011 34.2 10.2 161 72-250 173-348 (428)
141 cd06293 PBP1_LacI_like_11 Liga 65.1 1.1E+02 0.0025 28.0 12.8 77 159-244 48-149 (269)
142 PRK00366 ispG 4-hydroxy-3-meth 63.8 14 0.0003 37.5 5.4 37 157-193 46-84 (360)
143 cd06329 PBP1_SBP_like_3 Peripl 63.6 1E+02 0.0023 29.9 11.7 29 217-245 144-177 (342)
144 cd06288 PBP1_sucrose_transcrip 63.5 1.2E+02 0.0026 27.7 16.5 160 159-329 49-247 (269)
145 TIGR01162 purE phosphoribosyla 63.1 61 0.0013 29.1 8.9 84 85-197 1-84 (156)
146 PRK15404 leucine ABC transport 63.1 1.7E+02 0.0036 29.2 13.4 30 217-246 162-194 (369)
147 cd06357 PBP1_AmiC Periplasmic 63.0 1.5E+02 0.0033 29.1 12.9 66 217-298 133-201 (360)
148 TIGR00612 ispG_gcpE 1-hydroxy- 62.6 15 0.00033 36.9 5.5 37 157-193 38-76 (346)
149 PRK10355 xylF D-xylose transpo 62.4 75 0.0016 31.1 10.5 85 81-195 24-112 (330)
150 KOG2949 Ketopantoate hydroxyme 62.2 14 0.00031 35.2 5.0 43 153-196 185-227 (306)
151 PRK14573 bifunctional D-alanyl 62.1 26 0.00056 39.2 7.8 67 166-243 63-132 (809)
152 COG0106 HisA Phosphoribosylfor 62.0 86 0.0019 30.2 10.2 123 157-298 35-170 (241)
153 TIGR00655 PurU formyltetrahydr 61.8 45 0.00097 32.6 8.6 105 81-196 83-189 (280)
154 cd06300 PBP1_ABC_sugar_binding 61.8 88 0.0019 28.8 10.4 80 159-245 53-160 (272)
155 PRK00115 hemE uroporphyrinogen 61.6 93 0.002 30.9 11.1 28 151-178 184-211 (346)
156 cd06297 PBP1_LacI_like_12 Liga 60.9 1.4E+02 0.003 27.6 17.4 155 161-329 50-247 (269)
157 TIGR01917 gly_red_sel_B glycin 60.8 19 0.0004 37.4 5.9 47 150-197 320-372 (431)
158 PRK01438 murD UDP-N-acetylmura 60.4 1.1E+02 0.0024 31.6 11.8 76 165-248 77-155 (480)
159 cd06363 PBP1_Taste_receptor Li 60.4 90 0.0019 31.4 10.9 80 217-296 177-269 (410)
160 PRK10624 L-1,2-propanediol oxi 60.0 36 0.00079 34.4 7.9 45 196-248 18-65 (382)
161 TIGR01918 various_sel_PB selen 59.8 19 0.00041 37.3 5.8 47 150-197 320-372 (431)
162 PRK00278 trpC indole-3-glycero 59.6 67 0.0015 30.8 9.3 83 156-246 73-165 (260)
163 PF04723 GRDA: Glycine reducta 59.3 32 0.00069 30.3 6.2 73 216-297 5-78 (150)
164 cd06343 PBP1_ABC_ligand_bindin 59.1 1.2E+02 0.0026 29.6 11.3 30 217-246 145-177 (362)
165 cd06344 PBP1_ABC_ligand_bindin 59.0 1.7E+02 0.0038 28.1 12.3 20 277-296 182-201 (332)
166 COG0771 MurD UDP-N-acetylmuram 58.8 1.2E+02 0.0025 31.9 11.4 72 165-247 68-142 (448)
167 PRK00779 ornithine carbamoyltr 58.8 42 0.00091 33.2 7.9 88 155-251 88-186 (304)
168 cd06290 PBP1_LacI_like_9 Ligan 58.8 1.5E+02 0.0032 27.1 16.7 157 159-328 48-244 (265)
169 PF00490 ALAD: Delta-aminolevu 58.8 68 0.0015 32.1 9.2 107 149-292 143-249 (324)
170 cd06294 PBP1_ycjW_transcriptio 57.6 1.5E+02 0.0033 27.0 15.0 156 162-329 56-252 (270)
171 PF09587 PGA_cap: Bacterial ca 57.4 26 0.00056 33.2 6.0 63 159-228 68-140 (250)
172 PRK10401 DNA-binding transcrip 56.3 2E+02 0.0043 27.9 16.8 159 160-329 109-306 (346)
173 cd06349 PBP1_ABC_ligand_bindin 56.2 1.8E+02 0.0038 28.1 11.8 22 275-296 179-200 (340)
174 cd06353 PBP1_BmpA_Med_like Per 56.2 63 0.0014 30.7 8.5 30 79-108 117-146 (258)
175 PRK00141 murD UDP-N-acetylmura 56.0 1.3E+02 0.0029 31.2 11.5 76 166-246 74-152 (473)
176 cd06274 PBP1_FruR Ligand bindi 55.9 1.6E+02 0.0036 26.8 16.2 158 159-328 48-246 (264)
177 TIGR03863 PQQ_ABC_bind ABC tra 55.0 93 0.002 31.0 9.8 81 158-246 51-161 (347)
178 cd06307 PBP1_uncharacterized_s 54.8 1.8E+02 0.0038 26.9 13.5 53 277-329 199-255 (275)
179 PRK09283 delta-aminolevulinic 54.8 1.1E+02 0.0024 30.7 9.9 107 149-292 141-247 (323)
180 PRK14804 ornithine carbamoyltr 54.6 1.2E+02 0.0026 30.1 10.3 91 155-251 87-187 (311)
181 PRK13585 1-(5-phosphoribosyl)- 54.4 1E+02 0.0022 28.8 9.4 120 158-292 37-168 (241)
182 cd00717 URO-D Uroporphyrinogen 54.4 1.4E+02 0.0031 29.3 11.0 28 150-177 174-201 (335)
183 PRK02842 light-independent pro 54.1 67 0.0015 33.1 8.8 77 215-293 289-367 (427)
184 PRK02269 ribose-phosphate pyro 54.1 48 0.001 33.0 7.5 157 158-326 114-307 (320)
185 cd06310 PBP1_ABC_sugar_binding 54.1 1.8E+02 0.0038 26.7 14.2 159 160-328 51-252 (273)
186 PF08392 FAE1_CUT1_RppA: FAE1/ 54.0 1.2E+02 0.0027 29.9 10.1 79 94-188 42-129 (290)
187 COG1587 HemD Uroporphyrinogen- 53.9 54 0.0012 31.0 7.6 114 167-298 51-187 (248)
188 cd04731 HisF The cyclase subun 53.8 1.2E+02 0.0026 28.4 9.8 80 155-243 29-120 (243)
189 PF13911 AhpC-TSA_2: AhpC/TSA 53.7 21 0.00045 29.3 4.2 49 157-208 4-54 (115)
190 cd06305 PBP1_methylthioribose_ 53.6 1.8E+02 0.0039 26.6 14.8 160 160-329 49-255 (273)
191 cd08189 Fe-ADH5 Iron-containin 53.5 54 0.0012 33.0 7.9 47 194-248 12-61 (374)
192 cd06303 PBP1_LuxPQ_Quorum_Sens 53.1 1.9E+02 0.0042 26.9 13.7 112 217-329 132-260 (280)
193 PRK14805 ornithine carbamoyltr 52.9 68 0.0015 31.7 8.3 89 155-251 83-181 (302)
194 cd06301 PBP1_rhizopine_binding 52.8 1.9E+02 0.004 26.6 13.8 79 159-244 49-157 (272)
195 COG0407 HemE Uroporphyrinogen- 52.5 81 0.0018 32.0 8.8 25 151-175 187-211 (352)
196 cd06351 PBP1_iGluR_N_LIVBP_lik 52.3 2.1E+02 0.0045 27.0 11.8 39 158-196 55-94 (328)
197 PRK07709 fructose-bisphosphate 52.3 29 0.00063 34.1 5.5 52 157-208 160-227 (285)
198 TIGR01859 fruc_bis_ald_ fructo 52.3 43 0.00094 32.7 6.7 22 159-180 159-180 (282)
199 cd06393 PBP1_iGluR_Kainate_Glu 52.2 1.4E+02 0.003 29.8 10.6 39 156-195 63-102 (384)
200 COG0113 HemB Delta-aminolevuli 51.8 1.1E+02 0.0024 30.5 9.3 107 149-292 146-252 (330)
201 TIGR03151 enACPred_II putative 51.7 56 0.0012 32.3 7.5 75 158-241 121-213 (307)
202 PLN02424 ketopantoate hydroxym 51.4 72 0.0016 32.1 8.1 39 155-194 116-156 (332)
203 cd08182 HEPD Hydroxyethylphosp 51.3 68 0.0015 32.2 8.2 46 195-248 10-55 (367)
204 TIGR02638 lactal_redase lactal 51.2 53 0.0012 33.2 7.4 46 195-248 16-64 (379)
205 cd04823 ALAD_PBGS_aspartate_ri 51.2 1E+02 0.0022 30.8 9.0 107 149-292 138-244 (320)
206 cd06306 PBP1_TorT-like TorT-li 51.1 1.5E+02 0.0033 27.4 10.1 83 159-245 50-159 (268)
207 PRK12738 kbaY tagatose-bisphos 50.7 35 0.00075 33.6 5.8 25 157-181 159-183 (286)
208 PRK13011 formyltetrahydrofolat 50.7 75 0.0016 31.1 8.1 105 81-196 88-194 (286)
209 PF13377 Peripla_BP_3: Peripla 50.7 94 0.002 26.1 8.0 121 200-330 1-138 (160)
210 TIGR03379 glycerol3P_GlpC glyc 50.6 2.8E+02 0.0061 27.9 13.0 54 267-322 343-396 (397)
211 COG1454 EutG Alcohol dehydroge 50.6 65 0.0014 33.0 7.9 46 196-249 17-65 (377)
212 PRK06252 methylcobalamin:coenz 50.5 2.6E+02 0.0055 27.5 12.5 28 151-178 178-205 (339)
213 PRK09860 putative alcohol dehy 50.4 64 0.0014 32.7 7.9 48 194-249 17-67 (383)
214 TIGR01464 hemE uroporphyrinoge 50.4 2.6E+02 0.0056 27.5 14.0 27 151-177 178-204 (338)
215 TIGR01279 DPOR_bchN light-inde 50.3 81 0.0018 32.3 8.6 108 215-330 273-396 (407)
216 PF13714 PEP_mutase: Phosphoen 50.1 44 0.00096 31.9 6.2 50 159-208 161-213 (238)
217 PRK06259 succinate dehydrogena 50.0 52 0.0011 34.4 7.3 98 217-320 261-365 (486)
218 PF01094 ANF_receptor: Recepto 50.0 2.3E+02 0.005 26.8 11.4 42 196-245 109-153 (348)
219 PLN02192 3-ketoacyl-CoA syntha 49.9 1E+02 0.0022 32.9 9.4 111 93-226 134-267 (511)
220 PF01380 SIS: SIS domain SIS d 49.7 1.1E+02 0.0023 25.1 7.9 27 156-182 70-96 (131)
221 cd00384 ALAD_PBGS Porphobilino 49.6 1.1E+02 0.0025 30.4 9.0 107 149-292 133-239 (314)
222 KOG1053 Glutamate-gated NMDA-t 49.0 2.2E+02 0.0048 32.6 11.9 81 154-241 88-172 (1258)
223 PF00218 IGPS: Indole-3-glycer 49.0 1.1E+02 0.0023 29.7 8.7 83 156-246 71-163 (254)
224 TIGR01037 pyrD_sub1_fam dihydr 49.0 60 0.0013 31.5 7.2 19 155-173 171-189 (300)
225 cd06358 PBP1_NHase Type I peri 49.0 2.5E+02 0.0055 27.0 12.1 20 275-294 176-195 (333)
226 PRK01259 ribose-phosphate pyro 48.9 91 0.002 30.8 8.5 125 157-297 108-246 (309)
227 PRK13010 purU formyltetrahydro 48.9 64 0.0014 31.7 7.3 105 81-196 92-198 (289)
228 PRK13265 glycine/sarcosine/bet 48.8 55 0.0012 28.9 6.0 74 216-298 6-80 (154)
229 KOG0781 Signal recognition par 48.7 1E+02 0.0022 32.8 8.9 32 155-186 395-427 (587)
230 cd02809 alpha_hydroxyacid_oxid 48.5 72 0.0016 31.1 7.7 52 158-209 134-195 (299)
231 TIGR02320 PEP_mutase phosphoen 48.4 1.1E+02 0.0023 30.1 8.8 71 82-174 117-190 (285)
232 PRK08610 fructose-bisphosphate 48.1 32 0.00068 33.9 5.0 25 157-181 160-184 (286)
233 PRK02083 imidazole glycerol ph 48.0 68 0.0015 30.4 7.2 78 157-243 34-123 (253)
234 PRK04284 ornithine carbamoyltr 48.0 2.1E+02 0.0045 28.7 10.9 87 155-250 90-189 (332)
235 cd04824 eu_ALAD_PBGS_cysteine_ 47.8 1.4E+02 0.0031 29.8 9.4 107 149-292 137-244 (320)
236 COG3473 Maleate cis-trans isom 47.4 31 0.00067 32.6 4.5 53 157-209 170-225 (238)
237 PLN02932 3-ketoacyl-CoA syntha 47.3 1.4E+02 0.003 31.6 9.9 108 96-226 109-239 (478)
238 PRK01713 ornithine carbamoyltr 47.2 83 0.0018 31.6 7.9 88 155-250 91-190 (334)
239 cd06388 PBP1_iGluR_AMPA_GluR4 46.9 3.1E+02 0.0067 27.4 12.3 156 161-326 58-252 (371)
240 TIGR01858 tag_bisphos_ald clas 46.9 36 0.00077 33.4 5.2 52 157-208 157-224 (282)
241 cd06377 PBP1_iGluR_NMDA_NR3 N- 46.9 3E+02 0.0065 28.2 12.0 41 154-195 69-112 (382)
242 TIGR03379 glycerol3P_GlpC glyc 46.8 47 0.001 33.6 6.3 48 153-203 349-396 (397)
243 TIGR01457 HAD-SF-IIA-hyp2 HAD- 46.6 1.4E+02 0.0029 28.2 9.1 77 155-244 22-105 (249)
244 COG2185 Sbm Methylmalonyl-CoA 46.6 48 0.001 29.3 5.4 72 228-299 27-105 (143)
245 PRK12737 gatY tagatose-bisphos 46.6 39 0.00085 33.2 5.4 52 157-208 159-226 (284)
246 cd06315 PBP1_ABC_sugar_binding 46.4 2E+02 0.0044 26.8 10.3 77 159-244 49-160 (280)
247 PRK02102 ornithine carbamoyltr 46.2 79 0.0017 31.7 7.6 87 155-250 91-189 (331)
248 PF02729 OTCace_N: Aspartate/o 46.2 30 0.00066 30.2 4.2 41 155-197 84-124 (142)
249 PRK03803 murD UDP-N-acetylmura 45.7 2.5E+02 0.0054 28.7 11.5 70 166-247 68-140 (448)
250 cd06340 PBP1_ABC_ligand_bindin 45.5 1.1E+02 0.0025 29.7 8.6 24 275-298 188-211 (347)
251 TIGR03569 NeuB_NnaB N-acetylne 45.4 3.3E+02 0.0072 27.3 12.4 75 219-299 90-176 (329)
252 PF09989 DUF2229: CoA enzyme a 45.4 56 0.0012 30.7 6.1 60 230-294 14-76 (221)
253 TIGR00658 orni_carb_tr ornithi 45.3 96 0.0021 30.6 8.0 88 155-251 84-182 (304)
254 cd06282 PBP1_GntR_like_2 Ligan 45.3 2.4E+02 0.0051 25.6 15.2 76 160-244 49-150 (266)
255 PRK02705 murD UDP-N-acetylmura 45.0 1.1E+02 0.0024 31.3 8.8 69 165-244 67-138 (459)
256 COG0646 MetH Methionine syntha 44.8 3E+02 0.0065 27.4 11.1 129 149-295 139-295 (311)
257 cd06311 PBP1_ABC_sugar_binding 44.6 2.5E+02 0.0053 25.9 10.4 80 159-245 53-160 (274)
258 PRK00075 cbiD cobalt-precorrin 44.5 85 0.0018 32.0 7.6 68 149-226 183-256 (361)
259 PRK12857 fructose-1,6-bisphosp 44.5 27 0.00058 34.3 3.9 53 156-208 158-226 (284)
260 COG0462 PrsA Phosphoribosylpyr 44.4 88 0.0019 31.3 7.5 164 149-328 106-306 (314)
261 PF14639 YqgF: Holliday-juncti 44.4 1.2E+02 0.0025 26.9 7.6 108 47-164 24-141 (150)
262 COG3367 Uncharacterized conser 44.3 23 0.0005 35.5 3.4 38 166-203 287-331 (339)
263 cd06364 PBP1_CaSR Ligand-bindi 44.3 2.5E+02 0.0055 29.5 11.5 29 217-245 188-219 (510)
264 cd01538 PBP1_ABC_xylose_bindin 44.0 2.2E+02 0.0049 26.6 10.2 35 160-195 49-86 (288)
265 PRK13384 delta-aminolevulinic 43.9 1.7E+02 0.0038 29.2 9.4 106 149-292 143-248 (322)
266 PF04551 GcpE: GcpE protein; 43.9 35 0.00076 34.6 4.7 37 157-193 35-78 (359)
267 COG2089 SpsE Sialic acid synth 43.7 3.6E+02 0.0079 27.3 13.0 75 218-298 103-187 (347)
268 cd06272 PBP1_hexuronate_repres 43.6 2.6E+02 0.0055 25.5 15.2 158 160-329 45-241 (261)
269 PRK01390 murD UDP-N-acetylmura 43.5 2.1E+02 0.0045 29.5 10.5 76 165-247 64-146 (460)
270 cd01838 Isoamyl_acetate_hydrol 43.3 1.9E+02 0.0042 25.1 9.0 73 90-174 39-115 (199)
271 PRK09195 gatY tagatose-bisphos 42.6 29 0.00064 34.0 3.8 25 157-181 159-183 (284)
272 cd06283 PBP1_RegR_EndR_KdgR_li 42.1 2.6E+02 0.0057 25.2 15.9 74 160-242 49-148 (267)
273 PRK02458 ribose-phosphate pyro 41.9 1.4E+02 0.003 29.8 8.6 159 156-326 116-307 (323)
274 cd00331 IGPS Indole-3-glycerol 41.8 1.8E+02 0.0039 26.6 8.9 53 157-209 35-96 (217)
275 PRK14982 acyl-ACP reductase; P 41.8 2.7E+02 0.0059 28.1 10.6 96 149-249 75-189 (340)
276 PF02754 CCG: Cysteine-rich do 41.7 1.4E+02 0.0031 22.1 7.0 60 231-296 19-79 (85)
277 PRK06027 purU formyltetrahydro 41.7 1.1E+02 0.0025 29.8 7.8 104 81-195 88-193 (286)
278 PF08901 DUF1847: Protein of u 41.5 43 0.00093 30.1 4.3 46 194-247 41-87 (157)
279 PTZ00145 phosphoribosylpyropho 41.4 1.6E+02 0.0035 30.8 9.2 155 158-325 228-425 (439)
280 PLN02446 (5-phosphoribosyl)-5- 41.4 2.2E+02 0.0048 27.7 9.6 118 157-292 47-182 (262)
281 PLN02591 tryptophan synthase 41.3 3.3E+02 0.0072 26.1 15.1 15 159-173 99-113 (250)
282 cd01544 PBP1_GalR Ligand-bindi 41.2 2.9E+02 0.0063 25.4 14.1 121 197-328 101-247 (270)
283 TIGR03127 RuMP_HxlB 6-phospho 41.2 91 0.002 27.6 6.6 84 76-181 24-114 (179)
284 cd06373 PBP1_NPR_like Ligand b 41.2 2.7E+02 0.0058 27.6 10.7 34 161-194 68-102 (396)
285 cd06362 PBP1_mGluR Ligand bind 41.1 3.4E+02 0.0074 27.5 11.7 29 217-245 173-204 (452)
286 cd05009 SIS_GlmS_GlmD_2 SIS (S 40.9 2E+02 0.0043 24.1 8.5 84 78-177 9-100 (153)
287 cd06302 PBP1_LsrB_Quorum_Sensi 40.8 3.2E+02 0.0069 25.8 13.6 51 278-328 200-254 (298)
288 PLN02369 ribose-phosphate pyro 40.8 1.7E+02 0.0036 28.9 8.9 128 157-298 99-241 (302)
289 PRK07998 gatY putative fructos 40.8 46 0.00099 32.7 4.8 24 158-181 158-181 (283)
290 COG1570 XseA Exonuclease VII, 40.7 1.4E+02 0.0031 31.2 8.5 70 210-295 130-202 (440)
291 smart00851 MGS MGS-like domain 40.5 66 0.0014 25.3 5.0 30 198-244 4-33 (90)
292 TIGR00262 trpA tryptophan synt 40.5 3.4E+02 0.0073 26.0 11.9 14 113-126 11-24 (256)
293 cd08194 Fe-ADH6 Iron-containin 40.3 1.1E+02 0.0024 30.8 7.8 46 195-248 10-58 (375)
294 cd08190 HOT Hydroxyacid-oxoaci 40.1 1.1E+02 0.0025 31.3 7.9 46 195-248 10-58 (414)
295 PRK07084 fructose-bisphosphate 40.1 53 0.0011 32.9 5.2 26 157-182 168-193 (321)
296 PF02776 TPP_enzyme_N: Thiamin 39.9 26 0.00057 31.0 2.9 44 159-202 8-52 (172)
297 PRK11041 DNA-binding transcrip 39.9 3.2E+02 0.007 25.6 15.8 122 197-329 141-282 (309)
298 PRK00856 pyrB aspartate carbam 39.8 41 0.00088 33.3 4.4 88 155-250 90-191 (305)
299 cd08176 LPO Lactadehyde:propan 39.7 1.1E+02 0.0023 31.0 7.5 47 194-248 14-63 (377)
300 PRK12562 ornithine carbamoyltr 39.6 2.5E+02 0.0053 28.3 10.0 89 155-250 90-190 (334)
301 PF02574 S-methyl_trans: Homoc 39.4 65 0.0014 31.4 5.8 136 149-296 131-290 (305)
302 TIGR01463 mtaA_cmuA methyltran 39.3 3.8E+02 0.0083 26.3 11.7 25 151-175 178-202 (340)
303 smart00854 PGA_cap Bacterial c 39.2 83 0.0018 29.4 6.3 63 159-225 66-135 (239)
304 PF08821 CGGC: CGGC domain; I 39.2 61 0.0013 27.1 4.7 22 155-176 54-75 (107)
305 cd06361 PBP1_GPC6A_like Ligand 39.2 1.6E+02 0.0034 29.9 8.7 41 197-245 161-204 (403)
306 cd06308 PBP1_sensor_kinase_lik 39.1 3.1E+02 0.0067 25.1 14.0 77 160-245 50-157 (270)
307 PF02142 MGS: MGS-like domain 39.0 84 0.0018 25.1 5.4 31 198-245 4-34 (95)
308 cd05017 SIS_PGI_PMI_1 The memb 38.9 1.4E+02 0.0031 24.5 7.1 37 156-195 60-96 (119)
309 PRK06806 fructose-bisphosphate 38.9 1E+02 0.0022 30.2 7.0 21 160-180 160-180 (281)
310 PRK08811 uroporphyrinogen-III 38.6 1.9E+02 0.004 27.9 8.7 93 152-246 27-166 (266)
311 cd06319 PBP1_ABC_sugar_binding 38.6 3.1E+02 0.0067 25.1 10.0 29 217-245 126-159 (277)
312 PLN02617 imidazole glycerol ph 38.4 62 0.0013 34.7 5.8 86 156-250 270-393 (538)
313 COG0647 NagD Predicted sugar p 38.3 2.3E+02 0.0049 27.6 9.2 79 155-246 29-115 (269)
314 PRK00553 ribose-phosphate pyro 38.2 96 0.0021 31.1 6.8 126 158-297 118-256 (332)
315 cd06284 PBP1_LacI_like_6 Ligan 38.1 3.1E+02 0.0066 24.8 16.3 75 159-243 48-147 (267)
316 PRK07259 dihydroorotate dehydr 37.8 3.2E+02 0.0069 26.4 10.3 19 155-173 171-189 (301)
317 PRK09701 D-allose transporter 37.3 3.8E+02 0.0082 25.6 14.4 128 83-244 25-190 (311)
318 cd00408 DHDPS-like Dihydrodipi 37.3 1.4E+02 0.0029 28.6 7.5 38 156-193 82-127 (281)
319 PRK03092 ribose-phosphate pyro 37.3 1.7E+02 0.0036 29.0 8.2 129 157-297 97-239 (304)
320 PF00731 AIRC: AIR carboxylase 37.3 66 0.0014 28.6 4.9 80 84-195 2-84 (150)
321 PLN02854 3-ketoacyl-CoA syntha 37.2 2.4E+02 0.0051 30.3 9.8 111 93-226 146-279 (521)
322 PRK08185 hypothetical protein; 37.2 63 0.0014 31.7 5.2 24 159-182 155-178 (283)
323 cd06314 PBP1_tmGBP Periplasmic 37.1 3.3E+02 0.007 25.0 10.0 51 279-329 195-249 (271)
324 cd06291 PBP1_Qymf_like Ligand 37.0 2.4E+02 0.0053 25.6 9.1 74 160-244 49-146 (265)
325 PRK08005 epimerase; Validated 37.0 3.6E+02 0.0077 25.3 10.4 17 277-293 175-191 (210)
326 PRK11199 tyrA bifunctional cho 36.9 2.6E+02 0.0057 28.2 9.8 82 162-253 162-246 (374)
327 PRK11041 DNA-binding transcrip 36.9 2.6E+02 0.0057 26.2 9.5 21 278-298 83-103 (309)
328 PF03437 BtpA: BtpA family; I 36.8 59 0.0013 31.5 4.8 45 147-191 23-82 (254)
329 TIGR00262 trpA tryptophan synt 36.4 3.9E+02 0.0085 25.6 11.4 20 279-298 213-232 (256)
330 COG1911 RPL30 Ribosomal protei 36.1 71 0.0015 26.5 4.5 40 156-195 25-67 (100)
331 cd06269 PBP1_glutamate_recepto 36.0 3.3E+02 0.0073 24.7 12.7 32 165-196 70-102 (298)
332 PRK11274 glcF glycolate oxidas 36.0 79 0.0017 32.0 6.0 45 156-203 361-405 (407)
333 TIGR00167 cbbA ketose-bisphosp 36.0 60 0.0013 31.9 4.9 26 157-182 162-187 (288)
334 PRK15454 ethanol dehydrogenase 35.9 1.3E+02 0.0028 30.8 7.4 46 195-248 36-84 (395)
335 cd08187 BDH Butanol dehydrogen 35.9 1.6E+02 0.0035 29.7 8.2 33 217-249 29-65 (382)
336 PF02601 Exonuc_VII_L: Exonucl 35.9 1E+02 0.0022 30.2 6.6 62 217-293 15-82 (319)
337 PF02548 Pantoate_transf: Keto 35.8 1.3E+02 0.0028 29.3 7.0 34 266-299 155-188 (261)
338 PF06187 DUF993: Protein of un 35.6 1.6E+02 0.0034 29.9 7.6 79 90-193 86-182 (382)
339 PRK09722 allulose-6-phosphate 35.6 3.9E+02 0.0084 25.4 10.1 104 160-295 76-199 (229)
340 PRK06801 hypothetical protein; 35.5 1.3E+02 0.0027 29.6 7.0 52 158-209 161-228 (286)
341 PF03932 CutC: CutC family; I 35.4 1.9E+02 0.0042 26.9 7.9 111 156-291 10-145 (201)
342 PLN02645 phosphoglycolate phos 35.3 3E+02 0.0064 26.9 9.7 80 155-246 49-136 (311)
343 KOG0399 Glutamate synthase [Am 35.3 98 0.0021 36.5 6.8 87 81-188 1784-1871(2142)
344 PF03808 Glyco_tran_WecB: Glyc 35.2 2.6E+02 0.0056 24.9 8.5 77 82-192 48-129 (172)
345 cd00951 KDGDH 5-dehydro-4-deox 35.1 1.6E+02 0.0035 28.5 7.8 82 85-193 38-129 (289)
346 cd07039 TPP_PYR_POX Pyrimidine 35.0 57 0.0012 28.9 4.2 50 159-208 7-57 (164)
347 cd06353 PBP1_BmpA_Med_like Per 35.0 2.5E+02 0.0054 26.5 8.9 30 158-187 49-78 (258)
348 COG0118 HisH Glutamine amidotr 34.9 1.8E+02 0.004 27.2 7.6 16 82-97 1-17 (204)
349 PRK10423 transcriptional repre 34.8 2.3E+02 0.005 26.9 8.8 20 277-296 103-122 (327)
350 TIGR01251 ribP_PPkin ribose-ph 34.8 1.8E+02 0.004 28.6 8.1 127 156-296 108-247 (308)
351 PF02601 Exonuc_VII_L: Exonucl 34.7 87 0.0019 30.7 5.9 88 82-196 14-114 (319)
352 PRK13586 1-(5-phosphoribosyl)- 34.7 3E+02 0.0065 26.0 9.3 119 157-292 34-165 (232)
353 PRK07535 methyltetrahydrofolat 34.7 3.6E+02 0.0079 25.9 10.0 85 156-246 28-121 (261)
354 cd04740 DHOD_1B_like Dihydroor 34.7 1.1E+02 0.0024 29.5 6.5 22 155-177 168-189 (296)
355 cd08193 HVD 5-hydroxyvalerate 34.3 1.5E+02 0.0032 29.8 7.6 46 195-248 13-61 (376)
356 TIGR02129 hisA_euk phosphoribo 34.2 3.6E+02 0.0077 26.1 9.7 86 158-252 43-137 (253)
357 PRK14987 gluconate operon tran 34.1 1.8E+02 0.004 27.8 8.0 29 216-246 63-98 (331)
358 PF04309 G3P_antiterm: Glycero 34.1 35 0.00077 31.1 2.7 39 155-194 106-145 (175)
359 cd02810 DHOD_DHPD_FMN Dihydroo 34.0 80 0.0017 30.3 5.4 22 155-176 178-199 (289)
360 TIGR01481 ccpA catabolite cont 33.8 2.2E+02 0.0048 27.1 8.5 30 216-247 59-95 (329)
361 TIGR01769 GGGP geranylgeranylg 33.6 75 0.0016 29.7 4.9 41 153-193 11-57 (205)
362 PRK10550 tRNA-dihydrouridine s 33.5 1E+02 0.0022 30.5 6.1 42 156-197 151-202 (312)
363 TIGR00735 hisF imidazoleglycer 33.4 2.6E+02 0.0056 26.5 8.7 41 155-195 157-205 (254)
364 cd06278 PBP1_LacI_like_2 Ligan 33.4 3.6E+02 0.0079 24.3 15.9 76 160-244 48-148 (266)
365 cd07037 TPP_PYR_MenD Pyrimidin 33.3 72 0.0016 28.5 4.6 65 158-226 3-69 (162)
366 cd07381 MPP_CapA CapA and rela 33.3 55 0.0012 30.5 4.0 61 160-226 71-140 (239)
367 cd08185 Fe-ADH1 Iron-containin 33.2 2E+02 0.0043 29.0 8.3 45 195-248 13-61 (380)
368 PRK00748 1-(5-phosphoribosyl)- 33.2 2.7E+02 0.0058 25.6 8.7 122 155-292 32-165 (233)
369 COG1903 CbiD Cobalamin biosynt 33.2 1.4E+02 0.003 30.5 6.9 68 149-227 185-259 (367)
370 TIGR00284 dihydropteroate synt 33.2 4.2E+02 0.0091 28.2 10.9 40 153-192 165-211 (499)
371 PRK10653 D-ribose transporter 32.9 4.2E+02 0.0091 24.9 15.4 110 218-328 150-275 (295)
372 cd08191 HHD 6-hydroxyhexanoate 32.8 1.8E+02 0.0038 29.5 7.9 45 196-249 11-58 (386)
373 cd08181 PPD-like 1,3-propanedi 32.6 2E+02 0.0044 28.7 8.2 45 195-248 13-61 (357)
374 PRK08745 ribulose-phosphate 3- 32.3 4.3E+02 0.0094 24.9 10.7 18 277-294 183-200 (223)
375 TIGR00259 thylakoid_BtpA membr 32.1 92 0.002 30.2 5.3 46 149-195 24-84 (257)
376 PRK13587 1-(5-phosphoribosyl)- 32.1 3.1E+02 0.0068 25.8 9.0 120 158-294 36-169 (234)
377 cd06309 PBP1_YtfQ_like Peripla 32.0 4E+02 0.0087 24.4 13.2 79 159-244 48-158 (273)
378 COG1165 MenD 2-succinyl-6-hydr 31.8 1.4E+02 0.0031 32.1 7.0 89 157-250 13-106 (566)
379 TIGR01452 PGP_euk phosphoglyco 31.7 3.5E+02 0.0076 25.8 9.4 78 155-245 23-108 (279)
380 cd08551 Fe-ADH iron-containing 31.6 2E+02 0.0042 28.8 7.9 45 195-247 10-57 (370)
381 PRK04923 ribose-phosphate pyro 31.5 2.5E+02 0.0055 27.9 8.5 127 158-298 116-256 (319)
382 cd00947 TBP_aldolase_IIB Tagat 31.5 83 0.0018 30.8 5.0 25 157-181 152-176 (276)
383 COG0329 DapA Dihydrodipicolina 31.4 2E+02 0.0043 28.3 7.7 26 155-180 27-52 (299)
384 PRK05835 fructose-bisphosphate 31.4 51 0.0011 32.8 3.5 26 157-182 159-184 (307)
385 PF00834 Ribul_P_3_epim: Ribul 31.4 2.2E+02 0.0049 26.3 7.7 15 280-294 181-195 (201)
386 cd08186 Fe-ADH8 Iron-containin 31.4 2.2E+02 0.0047 28.8 8.2 32 217-248 27-62 (383)
387 PRK01033 imidazole glycerol ph 31.3 3.7E+02 0.0079 25.6 9.4 127 156-293 33-172 (258)
388 TIGR00736 nifR3_rel_arch TIM-b 31.3 80 0.0017 30.1 4.7 41 155-195 150-197 (231)
389 cd04723 HisA_HisF Phosphoribos 31.1 3.3E+02 0.0072 25.5 8.9 84 157-250 39-133 (233)
390 CHL00200 trpA tryptophan synth 30.8 5E+02 0.011 25.1 13.8 115 159-300 112-238 (263)
391 cd07372 2A5CPDO_B The beta sub 30.7 1.6E+02 0.0036 28.9 7.0 44 149-195 98-147 (294)
392 COG1648 CysG Siroheme synthase 30.7 2.2E+02 0.0047 26.6 7.5 90 157-259 26-115 (210)
393 PRK04308 murD UDP-N-acetylmura 30.6 1.8E+02 0.0038 29.8 7.6 73 165-246 66-141 (445)
394 COG0541 Ffh Signal recognition 30.6 1.9E+02 0.004 30.4 7.5 40 156-195 118-161 (451)
395 COG0773 MurC UDP-N-acetylmuram 30.5 1.3E+02 0.0029 31.6 6.5 69 165-244 65-136 (459)
396 cd06390 PBP1_iGluR_AMPA_GluR1 30.5 4.2E+02 0.0091 26.5 10.1 75 161-244 51-147 (364)
397 COG3010 NanE Putative N-acetyl 30.5 3.1E+02 0.0068 26.0 8.3 47 143-197 28-74 (229)
398 COG0552 FtsY Signal recognitio 30.4 1.7E+02 0.0036 29.6 7.0 68 155-231 156-236 (340)
399 PRK05627 bifunctional riboflav 30.3 5.4E+02 0.012 25.4 12.5 155 84-275 18-182 (305)
400 PRK10444 UMP phosphatase; Prov 30.1 2.6E+02 0.0057 26.5 8.1 77 155-245 22-105 (248)
401 PRK00286 xseA exodeoxyribonucl 30.1 1.5E+02 0.0033 30.4 7.0 88 82-196 135-231 (438)
402 PRK11168 glpC sn-glycerol-3-ph 30.0 1E+02 0.0022 31.1 5.5 45 156-203 350-394 (396)
403 cd00423 Pterin_binding Pterin 29.9 4.9E+02 0.011 24.7 11.3 122 156-293 27-172 (258)
404 PRK07064 hypothetical protein; 29.9 1.4E+02 0.0031 31.4 6.8 84 159-246 10-97 (544)
405 cd03307 Mta_CmuA_like MtaA_Cmu 29.8 5.3E+02 0.012 25.1 12.8 25 151-175 169-193 (326)
406 PRK00286 xseA exodeoxyribonucl 29.8 1.4E+02 0.0029 30.8 6.5 62 217-293 136-199 (438)
407 PLN02377 3-ketoacyl-CoA syntha 29.6 3.4E+02 0.0075 28.9 9.5 110 94-226 131-263 (502)
408 PRK11337 DNA-binding transcrip 29.1 2.2E+02 0.0047 27.3 7.5 26 155-180 203-228 (292)
409 PLN02520 bifunctional 3-dehydr 28.9 7.3E+02 0.016 26.4 12.7 35 216-250 252-288 (529)
410 cd06352 PBP1_NPR_GC_like Ligan 28.7 5.6E+02 0.012 25.0 12.3 35 160-194 62-97 (389)
411 cd07034 TPP_PYR_PFOR_IOR-alpha 28.6 1.2E+02 0.0025 26.2 5.1 49 159-207 6-59 (160)
412 PRK02812 ribose-phosphate pyro 28.5 2E+02 0.0044 28.8 7.3 125 158-296 130-267 (330)
413 cd05005 SIS_PHI Hexulose-6-pho 28.4 1.6E+02 0.0036 26.0 6.1 83 77-180 28-116 (179)
414 TIGR01305 GMP_reduct_1 guanosi 28.3 5.3E+02 0.011 26.2 10.0 113 171-295 48-186 (343)
415 cd03412 CbiK_N Anaerobic cobal 28.3 3E+02 0.0064 23.3 7.4 60 155-224 19-78 (127)
416 PRK07565 dihydroorotate dehydr 28.3 2.8E+02 0.006 27.5 8.3 54 156-209 117-192 (334)
417 cd08192 Fe-ADH7 Iron-containin 28.2 2.1E+02 0.0046 28.6 7.5 45 195-247 11-58 (370)
418 cd01574 PBP1_LacI Ligand-bindi 28.2 4.5E+02 0.0098 23.7 17.0 76 160-244 50-149 (264)
419 PLN02545 3-hydroxybutyryl-CoA 28.0 2.3E+02 0.005 27.2 7.5 32 217-250 5-36 (295)
420 TIGR00322 diphth2_R diphthamid 27.8 3.7E+02 0.008 26.9 9.0 91 151-247 30-149 (332)
421 PRK14114 1-(5-phosphoribosyl)- 27.7 3.8E+02 0.0082 25.5 8.7 118 157-292 34-163 (241)
422 PF02737 3HCDH_N: 3-hydroxyacy 27.7 1.5E+02 0.0032 26.7 5.7 31 218-250 1-31 (180)
423 PRK14024 phosphoribosyl isomer 27.7 5.2E+02 0.011 24.3 10.0 119 156-292 35-165 (241)
424 cd07035 TPP_PYR_POX_like Pyrim 27.6 70 0.0015 27.5 3.4 46 159-205 4-50 (155)
425 TIGR03586 PseI pseudaminic aci 27.4 6.4E+02 0.014 25.2 12.5 75 219-299 91-175 (327)
426 PRK02083 imidazole glycerol ph 27.4 3.5E+02 0.0076 25.4 8.5 40 156-195 156-203 (253)
427 cd06313 PBP1_ABC_sugar_binding 27.4 5E+02 0.011 24.0 14.3 159 160-328 49-251 (272)
428 cd01979 Pchlide_reductase_N Pc 27.3 3.2E+02 0.007 27.7 8.7 98 215-318 275-373 (396)
429 cd02070 corrinoid_protein_B12- 27.3 1.6E+02 0.0035 26.8 6.0 81 217-298 83-176 (201)
430 PRK07565 dihydroorotate dehydr 27.3 3.2E+02 0.0069 27.0 8.5 22 155-177 179-200 (334)
431 PRK08155 acetolactate synthase 27.2 1.5E+02 0.0033 31.5 6.5 66 158-227 19-86 (564)
432 cd06359 PBP1_Nba_like Type I p 27.1 5.6E+02 0.012 24.5 12.3 23 274-296 174-196 (333)
433 PRK01130 N-acetylmannosamine-6 27.1 4.9E+02 0.011 23.8 9.6 39 155-196 25-63 (221)
434 PRK12416 protoporphyrinogen ox 27.1 41 0.00089 34.5 2.1 22 82-103 1-23 (463)
435 TIGR01304 IMP_DH_rel_2 IMP deh 26.9 1.6E+02 0.0034 30.1 6.2 54 155-208 144-210 (369)
436 cd02803 OYE_like_FMN_family Ol 26.9 1.7E+02 0.0036 28.6 6.3 22 155-176 230-251 (327)
437 PRK09590 celB cellobiose phosp 26.9 3.6E+02 0.0079 22.2 8.0 31 164-195 48-81 (104)
438 cd03522 MoeA_like MoeA_like. T 26.9 2.1E+02 0.0046 28.4 7.1 62 215-294 158-227 (312)
439 PRK07199 phosphoribosylpyropho 26.9 3.8E+02 0.0082 26.4 8.8 153 159-325 111-293 (301)
440 cd00950 DHDPS Dihydrodipicolin 26.8 2.7E+02 0.0058 26.6 7.7 83 85-193 38-130 (284)
441 PRK02261 methylaspartate mutas 26.8 4.1E+02 0.009 22.9 10.9 48 197-250 72-121 (137)
442 cd00952 CHBPH_aldolase Trans-o 26.7 2.8E+02 0.006 27.3 7.8 83 85-193 46-139 (309)
443 COG1737 RpiR Transcriptional r 26.7 3.7E+02 0.008 25.9 8.6 94 75-180 123-218 (281)
444 cd00945 Aldolase_Class_I Class 26.7 1E+02 0.0022 27.0 4.4 22 155-176 67-88 (201)
445 TIGR00639 PurN phosphoribosylg 26.6 4.6E+02 0.01 23.9 8.8 102 84-195 2-107 (190)
446 PF00582 Usp: Universal stress 26.4 1.3E+02 0.0028 23.8 4.6 36 158-193 94-137 (140)
447 PLN02948 phosphoribosylaminoim 26.4 3.7E+02 0.0081 29.0 9.3 77 155-236 454-536 (577)
448 COG1570 XseA Exonuclease VII, 26.4 2.3E+02 0.005 29.7 7.3 94 74-196 129-232 (440)
449 PRK10727 DNA-binding transcrip 26.4 4.2E+02 0.009 25.5 9.0 29 216-246 59-94 (343)
450 PRK13111 trpA tryptophan synth 26.2 4.5E+02 0.0098 25.3 9.0 85 152-246 25-147 (258)
451 TIGR02321 Pphn_pyruv_hyd phosp 26.1 2E+02 0.0043 28.3 6.6 90 82-193 115-209 (290)
452 cd00953 KDG_aldolase KDG (2-ke 26.1 2.6E+02 0.0056 27.0 7.4 25 155-179 22-46 (279)
453 TIGR01460 HAD-SF-IIA Haloacid 26.0 2.7E+02 0.0058 26.0 7.3 76 155-243 19-102 (236)
454 PRK13602 putative ribosomal pr 26.0 1.3E+02 0.0029 23.7 4.4 45 159-205 20-67 (82)
455 PRK08674 bifunctional phosphog 25.8 2.6E+02 0.0056 27.7 7.5 36 157-195 96-131 (337)
456 TIGR01862 N2-ase-Ialpha nitrog 25.8 6.5E+02 0.014 26.0 10.7 41 83-125 120-160 (443)
457 PF00289 CPSase_L_chain: Carba 25.7 1.7E+02 0.0036 24.4 5.2 84 155-249 14-107 (110)
458 PF02581 TMP-TENI: Thiamine mo 25.7 2.9E+02 0.0063 24.5 7.2 50 159-208 108-171 (180)
459 COG3142 CutC Uncharacterized p 25.7 6.1E+02 0.013 24.4 12.4 80 162-247 17-121 (241)
460 PRK08645 bifunctional homocyst 25.7 8.8E+02 0.019 26.3 12.3 131 149-296 121-272 (612)
461 PRK05926 hypothetical protein; 25.5 6.5E+02 0.014 25.5 10.5 137 82-247 115-260 (370)
462 PLN02591 tryptophan synthase 25.4 6.1E+02 0.013 24.3 9.8 12 115-126 5-16 (250)
463 TIGR03845 sulfopyru_alph sulfo 25.3 1.7E+02 0.0037 25.8 5.5 40 159-200 5-46 (157)
464 cd06276 PBP1_FucR_like Ligand- 25.3 5.3E+02 0.012 23.6 13.0 112 199-328 106-230 (247)
465 TIGR01521 FruBisAldo_II_B fruc 25.2 67 0.0015 32.5 3.2 26 157-182 175-200 (347)
466 PF06187 DUF993: Protein of un 25.2 3.7E+02 0.0081 27.3 8.2 82 147-246 88-183 (382)
467 PRK06847 hypothetical protein; 25.1 52 0.0011 32.4 2.4 24 79-102 1-25 (375)
468 cd01541 PBP1_AraR Ligand-bindi 25.1 5.3E+02 0.011 23.5 16.6 159 159-329 48-252 (273)
469 COG2513 PrpB PEP phosphonomuta 24.8 3E+02 0.0066 27.2 7.5 104 82-209 118-229 (289)
470 TIGR02717 AcCoA-syn-alpha acet 24.6 3E+02 0.0066 28.5 8.0 112 180-295 261-379 (447)
471 PRK11168 glpC sn-glycerol-3-ph 24.5 7.2E+02 0.016 24.8 12.0 50 271-322 345-394 (396)
472 KOG2882 p-Nitrophenyl phosphat 24.5 4.1E+02 0.0089 26.5 8.3 82 155-249 43-133 (306)
473 cd06306 PBP1_TorT-like TorT-li 24.5 1.5E+02 0.0032 27.5 5.3 28 218-247 1-35 (268)
474 PRK00694 4-hydroxy-3-methylbut 24.2 1.3E+02 0.0029 32.5 5.3 38 157-194 49-93 (606)
475 cd00408 DHDPS-like Dihydrodipi 24.2 3E+02 0.0065 26.1 7.5 25 155-179 20-44 (281)
476 cd02810 DHOD_DHPD_FMN Dihydroo 24.2 1.4E+02 0.0031 28.5 5.2 24 156-179 114-137 (289)
477 cd07038 TPP_PYR_PDC_IPDC_like 24.1 1.3E+02 0.0029 26.4 4.6 50 159-208 4-54 (162)
478 PTZ00106 60S ribosomal protein 24.0 2.5E+02 0.0054 23.4 5.9 36 159-194 34-72 (108)
479 PRK10703 DNA-binding transcrip 24.0 4.8E+02 0.01 25.0 9.0 30 216-247 59-95 (341)
480 COG1744 Med Uncharacterized AB 23.8 2.7E+02 0.0057 28.0 7.2 75 81-180 160-234 (345)
481 TIGR00237 xseA exodeoxyribonuc 23.7 2.6E+02 0.0057 29.0 7.3 68 210-293 124-194 (432)
482 PRK15408 autoinducer 2-binding 23.6 1.2E+02 0.0026 30.1 4.6 37 158-195 72-111 (336)
483 cd04724 Tryptophan_synthase_al 23.5 6.3E+02 0.014 23.8 9.6 86 152-246 13-134 (242)
484 cd06381 PBP1_iGluR_delta_like 23.4 5.7E+02 0.012 25.5 9.6 39 156-195 53-92 (363)
485 PRK08617 acetolactate synthase 23.3 2.5E+02 0.0054 29.7 7.3 84 159-247 12-99 (552)
486 cd02071 MM_CoA_mut_B12_BD meth 23.3 3.1E+02 0.0066 22.8 6.5 69 228-296 14-90 (122)
487 cd06586 TPP_enzyme_PYR Pyrimid 23.3 3.5E+02 0.0075 22.7 7.0 50 159-208 4-54 (154)
488 COG1954 GlpP Glycerol-3-phosph 23.2 1.3E+02 0.0029 27.5 4.3 39 155-194 110-149 (181)
489 cd06328 PBP1_SBP_like_2 Peripl 23.2 6.8E+02 0.015 24.1 10.7 29 217-245 137-168 (333)
490 cd00954 NAL N-Acetylneuraminic 23.2 3.3E+02 0.0071 26.3 7.6 83 85-193 39-132 (288)
491 cd04740 DHOD_1B_like Dihydroor 23.2 4.2E+02 0.0091 25.4 8.3 23 155-177 104-126 (296)
492 PRK10415 tRNA-dihydrouridine s 23.1 7.3E+02 0.016 24.5 11.8 44 155-198 151-203 (321)
493 COG0329 DapA Dihydrodipicolina 23.1 3.4E+02 0.0073 26.6 7.7 84 83-192 40-133 (299)
494 TIGR00674 dapA dihydrodipicoli 23.0 3.1E+02 0.0068 26.3 7.4 83 85-193 36-128 (285)
495 cd08188 Fe-ADH4 Iron-containin 23.0 3.1E+02 0.0067 27.6 7.6 47 194-248 14-63 (377)
496 PRK04147 N-acetylneuraminate l 23.0 2.5E+02 0.0054 27.2 6.7 83 85-193 42-134 (293)
497 PRK13523 NADPH dehydrogenase N 23.0 1.9E+02 0.0042 28.8 6.0 22 155-176 229-250 (337)
498 COG3958 Transketolase, C-termi 22.9 2.7E+02 0.0058 27.8 6.7 87 150-243 202-300 (312)
499 cd05013 SIS_RpiR RpiR-like pro 22.9 4.1E+02 0.0088 21.4 7.6 90 196-298 3-99 (139)
500 KOG3857 Alcohol dehydrogenase, 22.8 2.6E+02 0.0057 28.7 6.7 67 194-268 56-128 (465)
No 1
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5e-56 Score=408.45 Aligned_cols=226 Identities=28% Similarity=0.372 Sum_probs=204.6
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
||+|||||||||+||+.||++||+.++ +.|+.|.+.++.+++++|++.-. .....|++..+.|.+.++
T Consensus 1 mk~iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~-----------q~~~~w~~~~~~L~~~a~ 69 (230)
T COG1794 1 MKTIGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETL-----------QRAGEWDEAGEILIDAAK 69 (230)
T ss_pred CceeEeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHH-----------HccCccccHHHHHHHHHH
Confidence 799999999999999999999999997 68899999999999998876321 223446889999999999
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhc
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ 240 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~ 240 (376)
.|+++|||+|++||||+|.++|++++.+++|++||+|+|+++++..|.+ |||||||.+||++++|++.|.++
T Consensus 70 ~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~k--------kvgLLgT~~Tm~~~fY~~~l~~~ 141 (230)
T COG1794 70 KLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAK--------KVGLLGTRFTMEQGFYRKRLEEK 141 (230)
T ss_pred HHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhcCCc--------eeEEeeccchHHhHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999998876 99999999999999999999999
Q ss_pred CCceeecCccccccchHHH-HHHHhcCCh-HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCCCCCCeeeehHHHH
Q 017159 241 GFEVVLPDKATMEHVIIPT-IEALNHRDM-EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDAL 318 (376)
Q Consensus 241 G~evv~p~~~~q~~~l~~~-ie~lk~G~~-~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~~~~vpvIDp~~~l 318 (376)
|+++++|++++|+. ++.+ ++++|.|+. +++++.+...+++|.++|||+|||||||+|+++++.+ ..+|+||++.+|
T Consensus 142 gievvvPdd~~q~~-v~~iIy~El~~G~~~~~sr~~~~~ii~~l~~~Gae~vIlGCTEi~lll~~~d-~~vP~~Dtt~ih 219 (230)
T COG1794 142 GIEVVVPDDDEQAE-VNRIIYEELCQGIVKDASRELYLAVIERLAERGAEGVILGCTEIPLLLSQDD-SSVPVFDTTAIH 219 (230)
T ss_pred CceEecCCHHHHHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHHcCCCEEEEeccchheeecCCc-ccCcccccHHHH
Confidence 99999999988875 4444 466999998 4689999999999999999999999999999998876 358999999999
Q ss_pred HHHHHHHHHh
Q 017159 319 ARSTVTWARS 328 (376)
Q Consensus 319 A~a~v~~a~~ 328 (376)
|+++++++..
T Consensus 220 a~aav~~aL~ 229 (230)
T COG1794 220 AEAAVELALE 229 (230)
T ss_pred HHHHHHHHhc
Confidence 9999988753
No 2
>PRK10200 putative racemase; Provisional
Probab=100.00 E-value=5.1e-53 Score=397.76 Aligned_cols=225 Identities=22% Similarity=0.319 Sum_probs=197.8
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
||+|||||||||+||++||++|++.++ +.||+|.|.+++|+|++||+.... .+++|+...+.+.+.++
T Consensus 1 mk~iGilGGmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~-----------~~~~~~~~~~~l~~~~~ 69 (230)
T PRK10200 1 MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQ-----------RRGEWDKTGDILAEAAL 69 (230)
T ss_pred CCeEEEccCCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHH-----------HCCCcchHHHHHHHHHH
Confidence 789999999999999999999999997 689999999999999999985421 22334678888999999
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhc
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ 240 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~ 240 (376)
+|+++|||+|||||||+|+|++++++.+++||+||+++++++++..+. +|||||||++|+++++|++.|+++
T Consensus 70 ~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii~~~~~~~~~~~~--------~~VglLaT~~Ti~s~~Y~~~l~~~ 141 (230)
T PRK10200 70 GLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAITGAGM--------TRVALLGTRYTMEQDFYRGRLTEQ 141 (230)
T ss_pred HHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehHHHHHHHHHHcCC--------CeEEEeccHHHHHHhHHHHHHHHh
Confidence 999999999999999999999999999999999999999998887654 499999999999999999999866
Q ss_pred -CCceeecCccccccchHHHH-HHHhcCCh-HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCCCCCCeeeehHHH
Q 017159 241 -GFEVVLPDKATMEHVIIPTI-EALNHRDM-EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDA 317 (376)
Q Consensus 241 -G~evv~p~~~~q~~~l~~~i-e~lk~G~~-~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~~~~vpvIDp~~~ 317 (376)
|+++++|+.+.|+. ++..| ++++.|.. ++.++.++++++.|.++|+|+|||||||||++.+..+. .+|+|||+++
T Consensus 142 ~g~~~~~p~~~~q~~-v~~~i~~~l~~G~~~~~~~~~l~~~l~~l~~~g~d~vILGCTelpll~~~~~~-~~~~iD~~~~ 219 (230)
T PRK10200 142 FSINCLIPEADERAK-INQIIFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERS-VLPVFDTAAI 219 (230)
T ss_pred cCCeEeCCCHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCCEEEECCcCHHHhCCcccC-CCCeEchHHH
Confidence 99999998766664 44445 47888876 55678999999999889999999999999999876543 3689999999
Q ss_pred HHHHHHHHHH
Q 017159 318 LARSTVTWAR 327 (376)
Q Consensus 318 lA~a~v~~a~ 327 (376)
||+++++++.
T Consensus 220 la~~~v~~~~ 229 (230)
T PRK10200 220 HAEDAVAFML 229 (230)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 3
>TIGR00035 asp_race aspartate racemase.
Probab=100.00 E-value=2e-52 Score=392.97 Aligned_cols=226 Identities=30% Similarity=0.465 Sum_probs=199.2
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
||+|||||||||+||++||++|++.++ +.||+|+|++++|+|++|||+... ....|+++.+.+.+.++
T Consensus 1 m~~iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~-----------~~~~~~~~~~~l~~~~~ 69 (229)
T TIGR00035 1 ENMIGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYI-----------LGRGEDRPRPILIDIAV 69 (229)
T ss_pred CCeEEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHH-----------hcCCcchHHHHHHHHHH
Confidence 789999999999999999999999997 699999999999999999986532 11223678899999999
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhc
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ 240 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~ 240 (376)
+|+++|||+|||||||+|+|++++++.+++||+||+++++++++..|. +|||||||++|+++++|++.|+++
T Consensus 70 ~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~~~~~~--------~~VgvLaT~~T~~s~~y~~~l~~~ 141 (229)
T TIGR00035 70 KLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAVKEDGV--------KKAGLLGTKGTMKDGVYEREMKKH 141 (229)
T ss_pred HHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCC--------CEEEEEecHHHHHhHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999977654 499999999999999999999999
Q ss_pred CCceeecCccccccchHHHH-HHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCCCCCCeeeehHHHHH
Q 017159 241 GFEVVLPDKATMEHVIIPTI-EALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALA 319 (376)
Q Consensus 241 G~evv~p~~~~q~~~l~~~i-e~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~~~~vpvIDp~~~lA 319 (376)
|++++.|+.+.++. ++..+ +.+++|+.+++++.++++++.|.++|+|+|||||||||++.++. ..++|+|||++++|
T Consensus 142 g~~v~~p~~~~~~~-i~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~gad~iILgCTelpll~~~~-~~~~pviD~~~~~a 219 (229)
T TIGR00035 142 GIEIVTPDKEEQEA-IMSGIYDEVKAGNIELGRELLLKIAKELEERGAEGIILGCTELSLILKAD-DLDVPLIDPMDVIA 219 (229)
T ss_pred CCEEECCCHHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEEeCcchHhhcccc-cCCCCeEchHHHHH
Confidence 99999987765653 34444 46888887778889999999998899999999999999998733 34689999999999
Q ss_pred HHHHHHHHh
Q 017159 320 RSTVTWARS 328 (376)
Q Consensus 320 ~a~v~~a~~ 328 (376)
+++++++.+
T Consensus 220 ~~~v~~a~~ 228 (229)
T TIGR00035 220 EAAVKLALE 228 (229)
T ss_pred HHHHHHHhc
Confidence 999999864
No 4
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=100.00 E-value=7.5e-39 Score=305.20 Aligned_cols=236 Identities=20% Similarity=0.219 Sum_probs=194.5
Q ss_pred EEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHH
Q 017159 85 IGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRH 157 (376)
Q Consensus 85 IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~ 157 (376)
|||++ |+|+++. ++.|.+..++ +|+.+.|| + .++. +++.+++.+
T Consensus 1 IgvfDSGiGGltv---~~~l~~~~p~~~~iy~~D~~~~PY----------------------G--~ks~--~~i~~~~~~ 51 (251)
T TIGR00067 1 IGVFDSGVGGLSV---LKEIRKQLPKEHYIYVGDTKRFPY----------------------G--EKSP--EFILEYVLE 51 (251)
T ss_pred CEEEeCCccHHHH---HHHHHHHCCCCCEEEEecCCCCCC----------------------C--CCCH--HHHHHHHHH
Confidence 79999 9999998 6777776753 67777776 3 2344 899999999
Q ss_pred HHHHHH-HcCCcEEEEeCCCchh-hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHH
Q 017159 158 KRAFLE-QAGARCIVMPCHISHA-WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQE 235 (376)
Q Consensus 158 ~~~~L~-~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~ 235 (376)
.+++|+ +.|||+|||||||||+ +++++++.+++||+||++++++.+.+.+ ..++||||||++|+++++|++
T Consensus 52 ~~~~L~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~iie~~v~~a~~~~-------~~~~IgvLAT~~Ti~s~~y~~ 124 (251)
T TIGR00067 52 LLTFLKERHNIKLLVVACNTASALALEDLQRNFDFPVVGVIEPAIKAAIRLT-------ANGRVLVIATNATIKSNAYHE 124 (251)
T ss_pred HHHHHHHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEeecHHHHHHHHHhC-------CCCeEEEEeCHHHHhhhHHHH
Confidence 999999 9999999999999995 5999999999999999999999887642 235999999999999999999
Q ss_pred HHHhcCCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCC---CCCCe
Q 017159 236 KLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDD---PLLKK 310 (376)
Q Consensus 236 ~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~---~~~vp 310 (376)
.++++|.++.+|...+++ + ++.++.|.. +++.+.++.+++.+.++++|+|||||||||++.+... +..++
T Consensus 125 ~i~~~~~~~~v~~~~~~~--l---v~~Ie~g~~~~~~~~~~l~~~l~~l~~~~~d~lILGCTh~P~l~~~i~~~~~~~v~ 199 (251)
T TIGR00067 125 ALKEIANDLLVEMLACPE--L---VPLAEAGLLGEDYALECLKRYLRPLLDTLPDTVVLGCTHFPLLKEEIEQYLPEHVR 199 (251)
T ss_pred HHHHhCCCCEEEecCCHH--H---HHHHHcCCcCCHHHHHHHHHHHHHHhcCCCCEEEECcCChHHHHHHHHHHcCCCcE
Confidence 999999999999877665 4 456677876 4477789999999988899999999999999976532 34579
Q ss_pred eeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhh
Q 017159 311 CIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFS 365 (376)
Q Consensus 311 vIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 365 (376)
+|||.+++|+++++++..... + .+........++.|+....|.++.++||+
T Consensus 200 ~IDp~~~la~~~~~~l~~~~~--~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 250 (251)
T TIGR00067 200 LVDSGVHTARRTAWLLEHKGP--L--AKSADAPDIEFCMSGTPIQFQELAKKWLG 250 (251)
T ss_pred EECCHHHHHHHHHHHHhhccc--c--cccCCCCCEEEEECCCHHHHHHHHHHHhC
Confidence 999999999999999865442 1 12222335788889888999999888875
No 5
>PRK00865 glutamate racemase; Provisional
Probab=100.00 E-value=1.2e-35 Score=284.66 Aligned_cols=238 Identities=19% Similarity=0.224 Sum_probs=187.3
Q ss_pred CCeEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQN 154 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~ 154 (376)
.++|||++ |+|+++. ++.|.+..++ +|+.+.|| + .++. +++.++
T Consensus 5 ~~~IgvfDSGiGGLtv---l~~i~~~lp~~~~iY~~D~~~~PY----------------------G--~ks~--~~i~~~ 55 (261)
T PRK00865 5 NAPIGVFDSGVGGLTV---LREIRRLLPDEHIIYVGDTARFPY----------------------G--EKSE--EEIRER 55 (261)
T ss_pred CCeEEEEECCccHHHH---HHHHHHHCCCCCEEEEecCCCCCC----------------------C--CCCH--HHHHHH
Confidence 45899999 9999998 7888887763 67777776 2 2344 899999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh-hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA-WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY 233 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y 233 (376)
+.+.+++|++.|||+|||||||+|. +++++|+.+++||+| ++++++.+... +..++||||||++|+++++|
T Consensus 56 ~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvig-i~~a~~~a~~~-------~~~~~igVLaT~~Ti~s~~y 127 (261)
T PRK00865 56 TLEIVEFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVG-IVPAIKPAAAL-------TRNGRIGVLATPGTVKSAAY 127 (261)
T ss_pred HHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEe-eHHHHHHHHHh-------cCCCeEEEEECHHHhhchHH
Confidence 9999999999999999999999996 689999999999999 77777766552 13459999999999999999
Q ss_pred HHHHHhcCCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCC---CCC
Q 017159 234 QEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDD---PLL 308 (376)
Q Consensus 234 ~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~---~~~ 308 (376)
++.++++|.++.+-...+.+ +++++ +.|.. ++..+.++++++.+.++|+|+|||||||||++.+... +..
T Consensus 128 ~~~i~~~~~~~~v~~~~~~~--lv~~i---e~g~~~~~~~~~~l~~~l~~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~ 202 (261)
T PRK00865 128 RDLIARFAPDCQVESLACPE--LVPLV---EAGILGGPVTLEVLREYLAPLLAAGIDTLVLGCTHYPLLKPEIQQVLGEG 202 (261)
T ss_pred HHHHHHhCCCCEEEEecCHH--HHHHH---hCCCcCCHHHHHHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHHHcCCC
Confidence 99999987554433333333 33333 44432 4577889999999988899999999999999876532 345
Q ss_pred CeeeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhh
Q 017159 309 KKCIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFS 365 (376)
Q Consensus 309 vpvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 365 (376)
+++|||.+++|+++++++..... + ..........+..|+....|+.++++||+
T Consensus 203 v~vIDp~~~~a~~~~~~l~~~~~--~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 255 (261)
T PRK00865 203 VTLIDSGEAIARRVARLLEELNL--L--ASSDENPAHRFFTTGDPEAFKRLAQRWLG 255 (261)
T ss_pred CEEECCHHHHHHHHHHHHhhccc--c--cccCCCCCEEEEECCCHHHHHHHHHHHhC
Confidence 89999999999999999865432 1 12222335688888889999999999988
No 6
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.8e-35 Score=278.22 Aligned_cols=247 Identities=19% Similarity=0.201 Sum_probs=202.4
Q ss_pred CCeEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQN 154 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~ 154 (376)
.++|||++ |+|+++. +|.|.+..+. +|..+.|| + +++. ++|.++
T Consensus 5 ~~~IgvFDSGVGGLsV---lrei~~~LP~e~~iY~~D~a~~PY----------------------G--~ks~--e~I~~~ 55 (269)
T COG0796 5 QPPIGVFDSGVGGLSV---LREIRRQLPDEDIIYVGDTARFPY----------------------G--EKSE--EEIRER 55 (269)
T ss_pred CCeEEEEECCCCcHHH---HHHHHHHCCCCcEEEEecCCCCCC----------------------C--CCCH--HHHHHH
Confidence 35899999 9999988 8888888874 57777776 2 3555 899999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY 233 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y 233 (376)
..+.+++|.+.+++++|||||||+.. +++||+++++||++++ ++++.+.+. +.+++||||||++|+++..|
T Consensus 56 ~~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPVvGvi-Paik~A~~~-------t~~~~IgViaT~~Tvks~~y 127 (269)
T COG0796 56 TLEIVDFLLERGIKALVIACNTASAVALEDLREKFDIPVVGVI-PAIKPAVAL-------TRNGRIGVIATPATVKSNAY 127 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCEEEec-cchHHHHHh-------ccCCeEEEEeccchhccHHH
Confidence 99999999999999999999999998 9999999999999999 666666665 35679999999999999999
Q ss_pred HHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCC---CCCCCe
Q 017159 234 QEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKD---DPLLKK 310 (376)
Q Consensus 234 ~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~---~~~~vp 310 (376)
++.+++..-++.+-..+|.+ +++++|.-..+. +.+++.+++++..+...++|++||||||||++.+.+ .+..++
T Consensus 128 ~~~i~~~~~~~~V~~la~p~--lV~lvE~g~~~~-~~~~~~l~~~l~~~~~~~~DtlVLGCTHyPll~~~i~~~~~~~v~ 204 (269)
T COG0796 128 RDLIARFAPDCEVESLACPE--LVPLVEEGIRGG-PVALEVLKEYLPPLQEAGPDTLVLGCTHYPLLKPEIQQVLGEHVA 204 (269)
T ss_pred HHHHHHhCCCCEEEEecCcc--hHHHHhcccccC-HHHHHHHHHHhcchhccCCCEEEEeCcCcHHHHHHHHHHhCCCce
Confidence 99999887777777778887 877777633333 346778888888888889999999999999997653 345689
Q ss_pred eeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhhhccccc
Q 017159 311 CIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFSVVVERI 371 (376)
Q Consensus 311 vIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 371 (376)
+|||....|+++.+.+.....+. ..........|+.|+...+|+++.+.|++..++.+
T Consensus 205 lids~~~~a~~~~~~L~~~~~~~---~~~~~~~~~~f~~tg~~~~~~~~~~~~l~~~~~~~ 262 (269)
T COG0796 205 LIDSGAETARRLARLLSPEGLLA---KGADGGPDHRFFTTGDPDEFEQLLKRWLGLGFEGV 262 (269)
T ss_pred EeCCHHHHHHHHHHHhChhhhcc---cccCCCcceEEEEcCCcHHHHHHHHHHhccCccce
Confidence 99999999999999887665321 11111114689999999999999999999976543
No 7
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=99.93 E-value=8.9e-26 Score=208.15 Aligned_cols=203 Identities=25% Similarity=0.331 Sum_probs=153.8
Q ss_pred EcCCChHHHHHHHHHHHHHhhh-CCCCCCCeEeecCCc-chhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHHHc
Q 017159 88 IGGVSVSSTLNFLGKLVWYSAK-DAEECPPFVVCNDPA-LNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLEQA 165 (376)
Q Consensus 88 IGGmGp~AT~~f~~kI~~~~~~-~dq~~~p~il~s~p~-ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~~~ 165 (376)
||||||.++..|+++|.+..+. .++ .+.+.++. +|+++... ... .|+ +.+.+.+.++.|++.
T Consensus 1 Ig~i~p~~~~~~~~~l~~~~~~~~~~----~v~~~~~~~~p~~~~~~---------~~~--~~~-~~~~~~~~~~~l~~~ 64 (216)
T PF01177_consen 1 IGVISPNSNLTVERELRRMLPAREGQ----EVYFHDTRGFPDRIKEE---------DAG--MSA-ILDRLIEAAEKLEKA 64 (216)
T ss_dssp EEEESSSTTHHHHHHHHHHSTTSCCT----EEEEEETTTSCTSHHHH---------HHH--HHH-HHHHHHHHHHHHHHT
T ss_pred CEEEEchHHHHHHHHHHHHhccccCC----EEEEEeCCCCCCccHHH---------hcc--hHH-HHHHHHHHHHHHHhC
Confidence 5677899999999999999975 333 55555554 55433211 000 123 666888999999999
Q ss_pred CCcEEEEeCCCchhhHHHHh-ccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhc-CC-
Q 017159 166 GARCIVMPCHISHAWHGDVS-EGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ-GF- 242 (376)
Q Consensus 166 Gad~IVIaCNTAH~~~d~L~-~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~-G~- 242 (376)
|+|+|+++|||+|+++++++ +.+++||+++++++++++.+ +.+ |||||+|..|..++.|++.++++ |+
T Consensus 65 g~d~i~i~C~s~~~~~~~~~~~~~~iPv~~~~~a~~~~~~~-~~~--------ri~vl~t~~~~~~~~~~~~~~~~~gi~ 135 (216)
T PF01177_consen 65 GVDAIVIACNSAHPFVDELRKERVGIPVVGIVEAALEAAKA-GGK--------RIGVLTTYTTEKSPLYEEFIEEAAGID 135 (216)
T ss_dssp TESEEEESSHHHHHHHHHHHHHHHSSEEEESHHHHHHHHHH-TSS--------EEEEEESHHHHHHTHHHHHHHHCTTEE
T ss_pred CCCEEEEcCCchhhhHHHHhhhcCceEEEeccHHHHHHHHh-cCC--------EEEEEecCcccchHHHHHHHHHhcCCc
Confidence 99999999999999999999 89999999999999998887 654 99999999999999999999998 96
Q ss_pred -ceeecCccccccchHHHH-HHHhcCChHH-HHHHHHHHHHHHh-hCCCCEEEECCCccccccCCC----CCCCCeeeeh
Q 017159 243 -EVVLPDKATMEHVIIPTI-EALNHRDMEG-ARNLLRIGIQLLL-VRAVNAVIIGSDEMQGVLPKD----DPLLKKCIDP 314 (376)
Q Consensus 243 -evv~p~~~~q~~~l~~~i-e~lk~G~~~~-a~~~l~~~i~~L~-~~gaDaVILGCTElpll~~~~----~~~~vpvIDp 314 (376)
++.- . +...+ +.++.|..+. ..+.+.+.++++. +.|+|+||||||||+++++.. ...++|||||
T Consensus 136 ~~~~~-------~-i~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~ 207 (216)
T PF01177_consen 136 DEVVA-------G-IHNAIYDVIELGDIPPEQIEILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDS 207 (216)
T ss_dssp CEEEE-------E-EEEEHTHHHHTTCTTHHHHHHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEH
T ss_pred HHHHH-------H-HHhhcHHHHhhhcCCHHHHHHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEcc
Confidence 3322 1 11011 2333565533 4667777777774 789999999999999874321 2346899999
Q ss_pred HHHHHHHHH
Q 017159 315 MDALARSTV 323 (376)
Q Consensus 315 ~~~lA~a~v 323 (376)
.++++++++
T Consensus 208 ~~~~~~~~l 216 (216)
T PF01177_consen 208 NQAAAWAAL 216 (216)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999874
No 8
>PRK07475 hypothetical protein; Provisional
Probab=99.89 E-value=8.2e-23 Score=194.35 Aligned_cols=163 Identities=14% Similarity=0.166 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
+.+++.+.+.++.|+++|||+|+++|||+|+|++++++.+++|++++..+.++.+++.. +..+|||||+|.+|
T Consensus 61 ~~~~~~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~------~~~~kIGILtt~~t- 133 (245)
T PRK07475 61 PSLLDAFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVATSSLLQVPLIQALL------PAGQKVGILTADAS- 133 (245)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhc------cCCCeEEEEeCCch-
Confidence 45778899999999999999999999999999999999999999999999999888763 12459999999998
Q ss_pred chHHHHHHHHhcCCce-----eecCccccccchHHHHH-HHhcCChHHHHHHHHHHHHHHhh--CCCCEEEECCCccccc
Q 017159 229 SAGFYQEKLQNQGFEV-----VLPDKATMEHVIIPTIE-ALNHRDMEGARNLLRIGIQLLLV--RAVNAVIIGSDEMQGV 300 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~ev-----v~p~~~~q~~~l~~~ie-~lk~G~~~~a~~~l~~~i~~L~~--~gaDaVILGCTElpll 300 (376)
.+|++.|++.|++. .+|+.+.+.+ ++..|+ ..+.++.+++.+.+.++++.|.+ .++|+|||+|||||.+
T Consensus 134 --~l~~~~l~~~Gi~~~~~~~~~~g~e~~~~-~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~daIvL~CTeLp~~ 210 (245)
T PRK07475 134 --SLTPAHLLAVGVPPDTSSLPIAGLEEGGE-FRRNILENRGELDNEAAEQEVVAAARALLERHPDIGAIVLECTNMPPY 210 (245)
T ss_pred --hhhHHHHHhCCCCCCCccccccCcccchH-HHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCCCEEEEcCcChHHH
Confidence 48999999999973 6777766654 454443 34445666677788888888874 4899999999999987
Q ss_pred cCCC-CCCCCeeeehHHHHHHH
Q 017159 301 LPKD-DPLLKKCIDPMDALARS 321 (376)
Q Consensus 301 ~~~~-~~~~vpvIDp~~~lA~a 321 (376)
.+.. ...++|+||+...+.+.
T Consensus 211 ~~~le~~~glPViDs~t~~~w~ 232 (245)
T PRK07475 211 AAAIQRATGLPVFDIVTLINWL 232 (245)
T ss_pred HHHHHHhcCCCEEeHHHHHHHH
Confidence 6543 23467999999877663
No 9
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=99.38 E-value=9.4e-12 Score=115.03 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=112.0
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHH
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKL 237 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L 237 (376)
.+..-+..|+|+|+|+|..- +.++.+|+.+.+|++|+.++.+..+..-| +|++|+.|..-.. ....+.+
T Consensus 61 ei~~~~~~GvdaiiIaCf~D-Pgl~~~Re~~~~PviGi~eAsv~~A~~vg---------rrfsViTtt~rs~-~il~~lv 129 (230)
T COG4126 61 EIADGEEQGVDAIIIACFSD-PGLAAARERAAIPVIGICEASVLAALFVG---------RRFSVITTTERSR-PILEELV 129 (230)
T ss_pred HhhcccccCCcEEEEEecCC-hHHHHHHHHhCCCceehhHHHHHHHHHhc---------ceEEEEecCcccH-HHHHHHH
Confidence 33445667999999999986 99999999999999999999998887755 4999999955332 3567778
Q ss_pred HhcCCceeecCccccccchHHHHHHHhcCChHHHHHH-HHHHHHHHhhCCCCEEEECCCccccccCCC-CCCCCeeeehH
Q 017159 238 QNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNL-LRIGIQLLLVRAVNAVIIGSDEMQGVLPKD-DPLLKKCIDPM 315 (376)
Q Consensus 238 ~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~-l~~~i~~L~~~gaDaVILGCTElpll~~~~-~~~~vpvIDp~ 315 (376)
+.+|+.-..+...+.+-.+. ++. +..++++.. +.++.+.+.+.|+|+|||||+.|+-+.+++ ...++|+||+.
T Consensus 130 ~~~g~s~~~~~vrstdl~vL----~l~-~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVIDgv 204 (230)
T COG4126 130 RSYGLSRHCRSVRSTDLPVL----ALE-GPPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVIDGV 204 (230)
T ss_pred HhcCccccccceeeCCCCcc----ccc-CChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcccch
Confidence 88888766664322221010 222 334455444 455556666889999999999999987664 34579999999
Q ss_pred HHHHHHHHHHHH
Q 017159 316 DALARSTVTWAR 327 (376)
Q Consensus 316 ~~lA~a~v~~a~ 327 (376)
.+.+..+..+.+
T Consensus 205 ~Aav~~a~~L~~ 216 (230)
T COG4126 205 AAAVKLAEGLLG 216 (230)
T ss_pred HHHHHHHHHHHh
Confidence 887776665543
No 10
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=98.99 E-value=2.8e-09 Score=101.39 Aligned_cols=161 Identities=11% Similarity=0.160 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHH-HHcCCcEEEEeCCCchhh------HHHHhc-cCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEe
Q 017159 151 VSQNLRHKRAFL-EQAGARCIVMPCHISHAW------HGDVSE-GCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVL 222 (376)
Q Consensus 151 i~~~l~~~~~~L-~~~Gad~IVIaCNTAH~~------~d~L~~-~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlL 222 (376)
+...+.+.+..| ..+++|+|+.+|..++.+ .+++++ ..++|+++...++.+++++.|.| ||+ +
T Consensus 55 m~~~l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~--------RIa-l 125 (239)
T TIGR02990 55 MQPRLTEAAALILPDEELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVR--------RIS-L 125 (239)
T ss_pred HhhhHHHHHHHhcCCCCCCEEEEccchhheecCHHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCC--------EEE-E
Confidence 333444444444 448999999999988764 345544 34799999999999999999876 999 7
Q ss_pred ecchhhchH-HHHHHHHhcCCceeecCc-cccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccc
Q 017159 223 ATDATLSAG-FYQEKLQNQGFEVVLPDK-ATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGV 300 (376)
Q Consensus 223 aT~~T~~s~-~Y~~~L~~~G~evv~p~~-~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll 300 (376)
.|+++-... ...+.|++.|++|+--.. ...++ .+-+.. ..+.+.+.+..+...++|+|++.||.|+-+
T Consensus 126 vTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~--------~~ia~i--~p~~i~~~~~~~~~~~aDAifisCTnLrt~ 195 (239)
T TIGR02990 126 LTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDD--------REMARI--SPDCIVEAALAAFDPDADALFLSCTALRAA 195 (239)
T ss_pred ECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCC--------ceeeec--CHHHHHHHHHHhcCCCCCEEEEeCCCchhH
Confidence 788875533 367889999999985422 11111 001122 223455555666677999999999999965
Q ss_pred --cCC-CCCCCCeeeehHHHHHHHHHHHHHhcc
Q 017159 301 --LPK-DDPLLKKCIDPMDALARSTVTWARSNK 330 (376)
Q Consensus 301 --~~~-~~~~~vpvIDp~~~lA~a~v~~a~~~~ 330 (376)
.+. +...++|||++.++++|.+++.++-..
T Consensus 196 ~vi~~lE~~lGkPVlsSNqat~W~~Lr~~G~~~ 228 (239)
T TIGR02990 196 TCAQRIEQAIGKPVVTSNQATAWRCLRLCGDPD 228 (239)
T ss_pred HHHHHHHHHHCCCEEEHHHHHHHHHHHHcCCCC
Confidence 222 234678999999999999999987443
No 11
>PRK10481 hypothetical protein; Provisional
Probab=98.98 E-value=4.9e-09 Score=98.57 Aligned_cols=148 Identities=14% Similarity=0.056 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
+.+...+.+.+..|++.|+|+|++.|..--+-++..+..+-.|...| ...++++.. .+||||+..-...
T Consensus 73 ~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i-~~lv~Al~~----------g~riGVitP~~~q 141 (224)
T PRK10481 73 QKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRIL-PPLVAAIVG----------GHQVGVIVPVEEQ 141 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhH-HHHHHHhcC----------CCeEEEEEeCHHH
Confidence 67888999999999999999999999764355777676677788887 555555443 2499988764443
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccc-cCC-CCC
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGV-LPK-DDP 306 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll-~~~-~~~ 306 (376)
-....+++ .+.|+++...... + + ....+.+.++.+.|...|+|+||++||.|..- .+. ...
T Consensus 142 i~~~~~kw-~~~G~~v~~~~as-p-------y--------~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~ 204 (224)
T PRK10481 142 LAQQAQKW-QVLQKPPVFALAS-P-------Y--------HGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKA 204 (224)
T ss_pred HHHHHHHH-HhcCCceeEeecC-C-------C--------CCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHH
Confidence 33334444 4449888743211 0 0 01223456667778889999999999999952 222 234
Q ss_pred CCCeeeehHHHHHHHHHH
Q 017159 307 LLKKCIDPMDALARSTVT 324 (376)
Q Consensus 307 ~~vpvIDp~~~lA~a~v~ 324 (376)
.++|||++..+.|+.+.+
T Consensus 205 lg~PVI~~n~a~ar~~~e 222 (224)
T PRK10481 205 LDVPVLLSNVLVARLAAE 222 (224)
T ss_pred HCcCEEcHHHHHHHHHHH
Confidence 578999999999986654
No 12
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.79 E-value=3.1e-08 Score=91.15 Aligned_cols=165 Identities=16% Similarity=0.160 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---------HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMPCHISHAW---------HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~---------~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVG 220 (376)
++..+..+++..|.++|+|+|+-+|.+++.+ ...+++..++|++.-.-++++.++..|.+ ||.
T Consensus 51 ~M~~~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~~v~vvTts~Avv~aL~al~a~--------ri~ 122 (238)
T COG3473 51 KMESYTERAALELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAKGVPVVTTSTAVVEALNALGAQ--------RIS 122 (238)
T ss_pred HHHHHHHHHHHhcCccccCEEEEeccceeeecCCchhHHHHHHHHhccCCceeechHHHHHHHHhhCcc--------eEE
Confidence 4555667778889999999999999999775 34577778999999999999999998875 787
Q ss_pred EeecchhhchH-HHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCcccc
Q 017159 221 VLATDATLSAG-FYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQG 299 (376)
Q Consensus 221 lLaT~~T~~s~-~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpl 299 (376)
+.|+++.+.. .-.++|+++|++++-.. +.. + -+.++-|..+ . ..+-++.+.+...++|+|+..||.|+-
T Consensus 123 -vlTPY~~evn~~e~ef~~~~Gfeiv~~~--~Lg--i---~dn~eigr~~-P-~~~y~lAk~~~~~~~DaiFiSCTnlRt 192 (238)
T COG3473 123 -VLTPYIDEVNQREIEFLEANGFEIVDFK--GLG--I---TDNLEIGRQE-P-WAVYRLAKEVFTPDADAIFISCTNLRT 192 (238)
T ss_pred -EeccchhhhhhHHHHHHHhCCeEEEEee--ccC--C---cccchhcccC-h-HHHHHHHHHhcCCCCCeEEEEeecccc
Confidence 6788987744 36688999999998432 111 1 2233335542 1 123334455667799999999999996
Q ss_pred cc--CC-CCCCCCeeeehHHHHHHHHHHHHHhcccc
Q 017159 300 VL--PK-DDPLLKKCIDPMDALARSTVTWARSNKKL 332 (376)
Q Consensus 300 l~--~~-~~~~~vpvIDp~~~lA~a~v~~a~~~~~~ 332 (376)
+. .. +...++|||.+.++.++.+++.+.-..+.
T Consensus 193 ~eii~~lE~~~G~PVvsSN~AT~W~~Lr~~g~~~k~ 228 (238)
T COG3473 193 FEIIEKLERDTGVPVVSSNQATLWMALRLIGLREKV 228 (238)
T ss_pred HHHHHHHHHHhCCceeeccHHHHHHHHHHcCCcccc
Confidence 52 11 23567899999999999999998766543
No 13
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=97.26 E-value=0.016 Score=54.64 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeec---cHHHHHHHHHHhcCCCCcCCCCceEEEeecc
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLH---VGECVAKELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~---Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
+.+...+.+.++.|++.|+|.|++-|..- |..+.. +.|+|- |+..+++.+.. ..+|||+.-.
T Consensus 70 ~~v~~~lq~~i~~le~~G~d~illlCTG~---F~~l~~--~~~lleP~ril~~lV~al~~----------~~~vGVivP~ 134 (221)
T PF07302_consen 70 KKVEPRLQACIAQLEAQGYDVILLLCTGE---FPGLTA--RNPLLEPDRILPPLVAALVG----------GHQVGVIVPL 134 (221)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeccCC---CCCCCC--CcceeehHHhHHHHHHHhcC----------CCeEEEEecC
Confidence 67888999999999999999999999652 223333 344554 33444444332 2489999876
Q ss_pred hhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCC-
Q 017159 226 ATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKD- 304 (376)
Q Consensus 226 ~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~- 304 (376)
........++ .+..+.++.+.... + + ....+.+.++.+.|.++|+|.|||-|-.|.---+..
T Consensus 135 ~eQ~~~~~~k-W~~l~~~~~~a~as-P-------y--------~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~ 197 (221)
T PF07302_consen 135 PEQIAQQAEK-WQPLGNPVVVAAAS-P-------Y--------EGDEEELAAAARELAEQGADLIVLDCMGYTQEMRDIV 197 (221)
T ss_pred HHHHHHHHHH-HHhcCCCeEEEEeC-C-------C--------CCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHH
Confidence 6544433333 33344444332110 0 0 012345777788899999999999999998543221
Q ss_pred -CCCCCeeeehHHHHHHHHHHH
Q 017159 305 -DPLLKKCIDPMDALARSTVTW 325 (376)
Q Consensus 305 -~~~~vpvIDp~~~lA~a~v~~ 325 (376)
...++|++=+...+|+.+.+.
T Consensus 198 ~~~~g~PVlLsr~lvAr~~~EL 219 (221)
T PF07302_consen 198 QRALGKPVLLSRTLVARLAAEL 219 (221)
T ss_pred HHHhCCCEEeHHHHHHHHHHHH
Confidence 234679999999988876654
No 14
>PRK00865 glutamate racemase; Provisional
Probab=96.08 E-value=0.058 Score=51.94 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=67.3
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
..++|||+|-.|...+ .+|++..+.... ...+.....|..-+.+- .+ ..+. ++..+.+.+.++
T Consensus 109 ~~~~igVLaT~~Ti~s-~~y~~~i~~~~~----~~~v~~~~~~~lv~~ie--------~g--~~~~--~~~~~~l~~~l~ 171 (261)
T PRK00865 109 RNGRIGVLATPGTVKS-AAYRDLIARFAP----DCQVESLACPELVPLVE--------AG--ILGG--PVTLEVLREYLA 171 (261)
T ss_pred CCCeEEEEECHHHhhc-hHHHHHHHHhCC----CCEEEEecCHHHHHHHh--------CC--CcCC--HHHHHHHHHHHH
Confidence 4578999985554444 456655543321 12232233332211111 01 1112 455666777788
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCC--CCeeccHHHHHHHHHH
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCS--IPFLHVGECVAKELKE 205 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~--vPvl~Iveat~~~~~~ 205 (376)
.|.+.|+|.||+.|.-...+.+.+++.++ +|+|+-.+++++.+..
T Consensus 172 ~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~v~vIDp~~~~a~~~~~ 218 (261)
T PRK00865 172 PLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVTLIDSGEAIARRVAR 218 (261)
T ss_pred HHhcCCCCEEEECCcCHHHHHHHHHHHcCCCCEEECCHHHHHHHHHH
Confidence 88888999999999765555788887654 9999999999888765
No 15
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=94.91 E-value=2.3 Score=42.20 Aligned_cols=210 Identities=15% Similarity=0.149 Sum_probs=110.1
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
+.+.||++=- .. +-.||..+.+... ...+....+++.+... +. +. ..+..
T Consensus 57 ~s~~Ig~i~p--~~-~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~--------------------~~--~~----e~~~~ 107 (333)
T COG1609 57 RTKTIGLVVP--DI-TNPFFAEILKGIEEAAREAGYSLLLANTDD--------------------DP--EK----EREYL 107 (333)
T ss_pred CCCEEEEEeC--CC-CCchHHHHHHHHHHHHHHcCCEEEEECCCC--------------------CH--HH----HHHHH
Confidence 4678888742 22 2267777777664 3444455666554211 11 22 22334
Q ss_pred HHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.|++..... +...+.+.+. ++|++-+ ...+++++.+.|++ +|
T Consensus 108 ~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~--------~i 178 (333)
T COG1609 108 ETLLQKRVDGLILLGERPNDSLLELLAAA-GIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHR--------RI 178 (333)
T ss_pred HHHHHcCCCEEEEecCCCCHHHHHHHHhc-CCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCCCc--------eE
Confidence 567789999999988332 3334455443 5665443 33467778887765 99
Q ss_pred EEeecch---hhch--HHHHHHHHhcCCce---eecCccc-cccchHHHHHH-HhcCC--hHH----HHHHHHHHHHHHh
Q 017159 220 GVLATDA---TLSA--GFYQEKLQNQGFEV---VLPDKAT-MEHVIIPTIEA-LNHRD--MEG----ARNLLRIGIQLLL 283 (376)
Q Consensus 220 GlLaT~~---T~~s--~~Y~~~L~~~G~ev---v~p~~~~-q~~~l~~~ie~-lk~G~--~~~----a~~~l~~~i~~L~ 283 (376)
|+++.+. +... .-|.+.++++|+.. .+...+. .+. -...... +..+. .+. .......+++.+.
T Consensus 179 ~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~-g~~~~~~ll~~~~~~ptAif~~nD~~Alg~l~~~~ 257 (333)
T COG1609 179 AFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEGDFSEES-GYEAAERLLARGEPRPTAIFCANDLMALGALRALR 257 (333)
T ss_pred EEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHH-HHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHH
Confidence 9999873 2222 23888899998763 2322111 111 1111222 22121 110 1122233333444
Q ss_pred hCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhcc
Q 017159 284 VRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSNK 330 (376)
Q Consensus 284 ~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~~ 330 (376)
+.| -|.-|.|--+.++.. ...+..-.+--+...+.+.+++.+...-
T Consensus 258 ~~g~~vP~disviGfDd~~~~~-~~~P~LTTv~~~~~~~G~~A~~~Ll~~i 307 (333)
T COG1609 258 ELGLRVPEDLSVIGFDDIELAR-FLTPPLTTVRQPIEELGRRAAELLLERI 307 (333)
T ss_pred HcCCCCCCeeEEEEecChhhhh-hCCCCCeeecCCHHHHHHHHHHHHHHHH
Confidence 433 368888888855432 2222223455667777777777765543
No 16
>TIGR00035 asp_race aspartate racemase.
Probab=94.90 E-value=0.23 Score=46.75 Aligned_cols=110 Identities=14% Similarity=0.153 Sum_probs=65.0
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
..++|||+|=-+...+-. |++..+.. + +.++. ..+..-+.+...-+..+..+ .. ++..+.+.+.++
T Consensus 116 ~~~~VgvLaT~~T~~s~~-y~~~l~~~---g---~~v~~-p~~~~~~~i~~~i~~~~~~g----~~--~~~~~~l~~~~~ 181 (229)
T TIGR00035 116 GVKKAGLLGTKGTMKDGV-YEREMKKH---G---IEIVT-PDKEEQEAIMSGIYDEVKAG----NI--ELGRELLLKIAK 181 (229)
T ss_pred CCCEEEEEecHHHHHhHH-HHHHHHHC---C---CEEEC-CCHHHHHHHHHHHHHHHhcC----Cc--HHHHHHHHHHHH
Confidence 357999999777777744 55544321 1 33332 22222111111101111001 11 334455777777
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHh
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEA 206 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~ 206 (376)
.|.+.|+|.|+++|.-...+.+ ++..++|+++..+..++++.+.
T Consensus 182 ~l~~~gad~iILgCTelpll~~--~~~~~~pviD~~~~~a~~~v~~ 225 (229)
T TIGR00035 182 ELEERGAEGIILGCTELSLILK--ADDLDVPLIDPMDVIAEAAVKL 225 (229)
T ss_pred HHHhCCCCEEEEeCcchHhhcc--cccCCCCeEchHHHHHHHHHHH
Confidence 8888899999999976655554 4556899999999998887764
No 17
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=94.47 E-value=0.48 Score=45.44 Aligned_cols=57 Identities=11% Similarity=0.080 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccC--CCCeeccHHHHHHHHHH
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGC--SIPFLHVGECVAKELKE 205 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~--~vPvl~Iveat~~~~~~ 205 (376)
++..+.+.+.++.|.+.|+|.++++|.-...+.+++++.+ ++++++..+.+++.+.+
T Consensus 155 ~~~~~~l~~~l~~l~~~~~d~lILGCTh~P~l~~~i~~~~~~~v~~IDp~~~la~~~~~ 213 (251)
T TIGR00067 155 DYALECLKRYLRPLLDTLPDTVVLGCTHFPLLKEEIEQYLPEHVRLVDSGVHTARRTAW 213 (251)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEECcCChHHHHHHHHHHcCCCcEEECCHHHHHHHHHH
Confidence 3455567777777877899999999976555578888764 47899999999888765
No 18
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=94.46 E-value=0.1 Score=49.28 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=54.0
Q ss_pred HHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCC-CCCCCeeeehHHHHHHHHHHH
Q 017159 261 EALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKD-DPLLKKCIDPMDALARSTVTW 325 (376)
Q Consensus 261 e~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~-~~~~vpvIDp~~~lA~a~v~~ 325 (376)
+.-+.|+++++.+.|....+.|.+.|||.|+|.|-=+..++++. ...++|+|+-.++.++++.+.
T Consensus 50 ~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~ 115 (230)
T COG1794 50 TLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAA 115 (230)
T ss_pred HHHccCccccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhc
Confidence 34456888888999999999999999999999998888877664 345789999999999987764
No 19
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=93.82 E-value=0.18 Score=46.17 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHH-HHcCCcEEEEeCCCchh---hHHHHhccCCCCeeccHHHHHHHH
Q 017159 150 AVSQNLRHKRAFL-EQAGARCIVMPCHISHA---WHGDVSEGCSIPFLHVGECVAKEL 203 (376)
Q Consensus 150 ~i~~~l~~~~~~L-~~~Gad~IVIaCNTAH~---~~d~L~~~~~vPvl~Iveat~~~~ 203 (376)
+..+.+.+.++.| .+.|+|+|+++|.-.+. +.+++.+..++||++-.+++++++
T Consensus 158 ~~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~~~~~~~~~ 215 (216)
T PF01177_consen 158 EQIEILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDSNQAAAWAA 215 (216)
T ss_dssp HHHHHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEccHHHHHHHh
Confidence 3556677777777 48999999999999994 467788888999999999888765
No 20
>PRK10481 hypothetical protein; Provisional
Probab=93.79 E-value=0.15 Score=48.37 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch-hhHHHHhccCCCCeeccHHHHHHHHHH
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISH-AWHGDVSEGCSIPFLHVGECVAKELKE 205 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH-~~~d~L~~~~~vPvl~Iveat~~~~~~ 205 (376)
+.+.++.|...|||+|++.|-..+ ...+.+++.+++|||....++++-+.+
T Consensus 171 l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ar~~~e 222 (224)
T PRK10481 171 LIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVARLAAE 222 (224)
T ss_pred HHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHHHHHHH
Confidence 566777888899999999999988 448899999999999988887765544
No 21
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=92.93 E-value=0.23 Score=46.80 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKE 205 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~ 205 (376)
+..+.++..|+|+|++.|-.+....++|++.++|||++-+.+.++.+..
T Consensus 165 ~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVIDgv~Aav~~a~~ 213 (230)
T COG4126 165 EAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVIDGVAAAVKLAEG 213 (230)
T ss_pred HHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcccchHHHHHHHHH
Confidence 3445577889999999999999999999999999999998887765544
No 22
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=92.79 E-value=0.93 Score=40.85 Aligned_cols=138 Identities=18% Similarity=0.158 Sum_probs=73.3
Q ss_pred HHHHHH-HHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHH---HHHHHHhcCCCCcCCCCceEEEeecchhhc-hH
Q 017159 157 HKRAFL-EQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECV---AKELKEAKLKPLEAGSGVRIGVLATDATLS-AG 231 (376)
Q Consensus 157 ~~~~~L-~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat---~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~-s~ 231 (376)
+.++.+ ++.|+|+|+=--.| .+.|++.+++||+.|--.. .+++.... ..+++||+++-+..+. ..
T Consensus 24 ~~a~~~~~~~g~dViIsRG~t----a~~lr~~~~iPVV~I~~s~~Dil~al~~a~------~~~~~Iavv~~~~~~~~~~ 93 (176)
T PF06506_consen 24 EEARQLLESEGADVIISRGGT----AELLRKHVSIPVVEIPISGFDILRALAKAK------KYGPKIAVVGYPNIIPGLE 93 (176)
T ss_dssp HHHHHHHTTTT-SEEEEEHHH----HHHHHCC-SS-EEEE---HHHHHHHHHHCC------CCTSEEEEEEESS-SCCHH
T ss_pred HHHHHhhHhcCCeEEEECCHH----HHHHHHhCCCCEEEECCCHhHHHHHHHHHH------hcCCcEEEEecccccHHHH
Confidence 344556 78999988866555 4567888899999985443 33333321 2346999999988775 33
Q ss_pred HHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCCCCCCee
Q 017159 232 FYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKC 311 (376)
Q Consensus 232 ~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~~~~vpv 311 (376)
.+.+.| |+++....-. . .+.+...++.+.+.|+|+||=|-+-..+. .. .+...-+
T Consensus 94 ~~~~ll---~~~i~~~~~~----------------~----~~e~~~~i~~~~~~G~~viVGg~~~~~~A-~~-~gl~~v~ 148 (176)
T PF06506_consen 94 SIEELL---GVDIKIYPYD----------------S----EEEIEAAIKQAKAEGVDVIVGGGVVCRLA-RK-LGLPGVL 148 (176)
T ss_dssp HHHHHH---T-EEEEEEES----------------S----HHHHHHHHHHHHHTT--EEEESHHHHHHH-HH-TTSEEEE
T ss_pred HHHHHh---CCceEEEEEC----------------C----HHHHHHHHHHHHHcCCcEEECCHHHHHHH-HH-cCCcEEE
Confidence 344444 6555432111 1 12345566777789998666554332222 22 1222345
Q ss_pred eehHHHHHHHHHHHHHhc
Q 017159 312 IDPMDALARSTVTWARSN 329 (376)
Q Consensus 312 IDp~~~lA~a~v~~a~~~ 329 (376)
|++.....+.+++.|...
T Consensus 149 i~sg~esi~~Al~eA~~i 166 (176)
T PF06506_consen 149 IESGEESIRRALEEALRI 166 (176)
T ss_dssp SS--HHHHHHHHHHHHHH
T ss_pred EEecHHHHHHHHHHHHHH
Confidence 678777777777776553
No 23
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=92.44 E-value=7.1 Score=37.52 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=52.8
Q ss_pred HHHHHHHcCCcEEEEeCCCch-hhHHHHhccCCCCeec---------------c-----HHHHHHHHHHhcCCCCcCCCC
Q 017159 158 KRAFLEQAGARCIVMPCHISH-AWHGDVSEGCSIPFLH---------------V-----GECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH-~~~d~L~~~~~vPvl~---------------I-----veat~~~~~~~g~k~~~~~~~ 216 (376)
.++.|.+.++|.+++.+.+.+ ..+..+.+. ++|++- + ...+.+++.+.|++
T Consensus 48 ~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~------- 119 (279)
T PF00532_consen 48 YIELLLQRRVDGIILASSENDDEELRRLIKS-GIPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHR------- 119 (279)
T ss_dssp HHHHHHHTTSSEEEEESSSCTCHHHHHHHHT-TSEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHhcCCCEEEEecccCChHHHHHHHHc-CCCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccC-------
Confidence 345688899999999988777 345555554 444432 2 23457778888875
Q ss_pred ce-EEEeecchh---hchHH--HHHHHHhcCCc
Q 017159 217 VR-IGVLATDAT---LSAGF--YQEKLQNQGFE 243 (376)
Q Consensus 217 ~r-VGlLaT~~T---~~s~~--Y~~~L~~~G~e 243 (376)
+ |++++.+.. ...++ |.+.++++|++
T Consensus 120 -~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~ 151 (279)
T PF00532_consen 120 -RPIAFIGGPEDSSTSRERLQGYRDALKEAGLP 151 (279)
T ss_dssp -STEEEEEESTTTHHHHHHHHHHHHHHHHTTSC
T ss_pred -CeEEEEecCcchHHHHHHHHHHHHHHHHcCCC
Confidence 8 999998643 23344 89999999983
No 24
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=92.39 E-value=0.28 Score=47.55 Aligned_cols=44 Identities=27% Similarity=0.506 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 152 SQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 152 ~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
.+.+.+.++.++++||++|++.|-. +....+|.+.+++|+++|.
T Consensus 159 a~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 159 AKKLLEDALALEEAGAQLLVLECVP-VELAAKITEALAIPVIGIG 202 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhCCCCEEeec
Confidence 3556777888999999999999998 5779999999999999974
No 25
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=91.78 E-value=9.1 Score=36.83 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=42.5
Q ss_pred HHHHHHc-CCcEEEEeCCCch--hhHHHHhccCCCCeeccH-------------------------HHHHHHHHHhcCCC
Q 017159 159 RAFLEQA-GARCIVMPCHISH--AWHGDVSEGCSIPFLHVG-------------------------ECVAKELKEAKLKP 210 (376)
Q Consensus 159 ~~~L~~~-Gad~IVIaCNTAH--~~~d~L~~~~~vPvl~Iv-------------------------eat~~~~~~~g~k~ 210 (376)
++.|.+. ++++|+.+..+.+ ...+.++ ..++|+++.. ...++.+.+.|.
T Consensus 60 ~~~l~~~~~v~avig~~~s~~~~~~~~~~~-~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-- 136 (336)
T cd06326 60 TRKLIEDDKVFALFGYVGTPTTAAALPLLE-EAGVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLGL-- 136 (336)
T ss_pred HHHHHhhcCcEEEEeCCCchhHHHHHHHHH-HcCCeEEEecCCcHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhCC--
Confidence 3455554 8998888754432 2233333 3467766531 123444555544
Q ss_pred CcCCCCceEEEeecchhh---chHHHHHHHHhcCCcee
Q 017159 211 LEAGSGVRIGVLATDATL---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 211 ~~~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv 245 (376)
+||+++..+... ....|++.+++.|++++
T Consensus 137 ------~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~ 168 (336)
T cd06326 137 ------KRIAVFYQDDAFGKDGLAGVEKALAARGLKPV 168 (336)
T ss_pred ------ceEEEEEecCcchHHHHHHHHHHHHHcCCCeE
Confidence 388888664321 12336677777787654
No 26
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=91.60 E-value=13 Score=35.66 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=81.9
Q ss_pred HHHHHHcCCcEEEEeC-CC-chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCc
Q 017159 159 RAFLEQAGARCIVMPC-HI-SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaC-NT-AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~ 217 (376)
.+.|.+.++|.|++.. +. ...+++.+.+ .++|++-+ ...+++++.+.|++
T Consensus 110 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~v~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~r-------- 180 (328)
T PRK11303 110 AEHLLQRQVDALIVSTSLPPEHPFYQRLQN-DGLPIIALDRALDREHFTSVVSDDQDDAEMLAESLLKFPAE-------- 180 (328)
T ss_pred HHHHHHcCCCEEEEcCCCCCChHHHHHHHh-cCCCEEEECCCCCCCCCCEEEeCCHHHHHHHHHHHHHCCCC--------
Confidence 3456678999988753 32 2344565543 35666533 13346667776654
Q ss_pred eEEEeecchh-----hchHHHHHHHHhcCCceee--cCccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHhh
Q 017159 218 RIGVLATDAT-----LSAGFYQEKLQNQGFEVVL--PDKATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLLLV 284 (376)
Q Consensus 218 rVGlLaT~~T-----~~s~~Y~~~L~~~G~evv~--p~~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L~~ 284 (376)
+|++++.... .+..-|.+.++++|+++.. ......+. -...++. +..+ .++. .......+++.+.+
T Consensus 181 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~ 259 (328)
T PRK11303 181 SILLLGALPELSVSFEREQGFRQALKDDPREVHYLYANSFEREA-GAQLFEKWLETHPMPDALFTTSYTLLQGVLDVLLE 259 (328)
T ss_pred eEEEEeCccccccHHHHHHHHHHHHHHcCCCceEEEeCCCChHH-HHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 9999975432 1223488889998875322 11111111 1112222 2222 1111 11223344555555
Q ss_pred CCC----CEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHhc
Q 017159 285 RAV----NAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARSN 329 (376)
Q Consensus 285 ~ga----DaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~~ 329 (376)
.|. |.-|.|....++..- ..+. +..| =+.+.+++.+++.+...
T Consensus 260 ~g~~vP~disv~gfd~~~~~~~-~~p~-lttv~~~~~~~g~~a~~~l~~~ 307 (328)
T PRK11303 260 RPGELPSDLAIATFGDNELLDF-LPCP-VNAVAQQHRLIAERALELALAA 307 (328)
T ss_pred cCCCCCCceEEEEeCChHHHhc-cCCC-ceEEecCHHHHHHHHHHHHHHH
Confidence 553 677788877665421 1121 2233 34567788888777553
No 27
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=91.38 E-value=0.4 Score=46.23 Aligned_cols=44 Identities=30% Similarity=0.502 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 152 SQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 152 ~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
.+.+.+.++.++++|||+|++.|-.. ....++.+.+++|+|+|.
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v~iP~igiG 200 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLECVPA-ELAKEITEALSIPTIGIG 200 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCCCCEEEec
Confidence 45566777889999999999999974 678999999999999985
No 28
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=91.20 E-value=0.41 Score=47.79 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
+-.+.+.+.++.|+++||++|++.|-... ...+|.+.++||.|+|.
T Consensus 179 ~~a~~li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l~IPtIGIG 224 (332)
T PLN02424 179 ESAVKVVETALALQEAGCFAVVLECVPAP-VAAAITSALQIPTIGIG 224 (332)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhCCCCEEeec
Confidence 34455777888899999999999999865 88999999999999984
No 29
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=91.08 E-value=3.9 Score=40.81 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHcCCcEEEEeCCCchh---------h---HHHHhccCCCCe-ec
Q 017159 163 EQAGARCIVMPCHISHA---------W---HGDVSEGCSIPF-LH 194 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~---------~---~d~L~~~~~vPv-l~ 194 (376)
+..|||+|.+.+.+.++ + .+.+++.+++|+ |.
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id 130 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIG 130 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEe
Confidence 47899999999655555 2 677888899999 54
No 30
>PRK10200 putative racemase; Provisional
Probab=91.07 E-value=0.9 Score=42.95 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=60.3
Q ss_pred eEEEeecchhhch-HHHHHHHHhc----C---CceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCE
Q 017159 218 RIGVLATDATLSA-GFYQEKLQNQ----G---FEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNA 289 (376)
Q Consensus 218 rVGlLaT~~T~~s-~~Y~~~L~~~----G---~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDa 289 (376)
+|||||-=+...+ .+|++..+.. + ...++..... +-+....+..++.+.....+.+.++.|.+.|||.
T Consensus 3 ~iGilGGmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~ 78 (230)
T PRK10200 3 TIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVD----FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEG 78 (230)
T ss_pred eEEEccCCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCC----hHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCE
Confidence 6888866555543 3566554332 1 2222222111 1111223444555556788999999999999999
Q ss_pred EEECCCccccccCCC-CCCCCeeeehHHHHHHHHH
Q 017159 290 VIIGSDEMQGVLPKD-DPLLKKCIDPMDALARSTV 323 (376)
Q Consensus 290 VILGCTElpll~~~~-~~~~vpvIDp~~~lA~a~v 323 (376)
||++|-=.....+.. ...++|+|+-.+..+.++.
T Consensus 79 iviaCNTah~~~~~l~~~~~iPii~ii~~~~~~~~ 113 (230)
T PRK10200 79 IVLCTNTMHKVADAIESRCSLPFLHIADATGRAIT 113 (230)
T ss_pred EEECCchHHHHHHHHHHhCCCCEeehHHHHHHHHH
Confidence 999996555444432 2346899997776655443
No 31
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.83 E-value=12 Score=34.50 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=75.2
Q ss_pred HHHHHHcCCcEEEE-eCCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+.+.++|.+++ +++.... ..++. ..++|++.+ ...+++.+.+.|.+ +
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~-~~~~~-~~~iPvV~~~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~g~~--------~ 117 (263)
T cd06280 48 LELMEEERVTGVIFAPTRATLR-RLAEL-RLSFPVVLIDRAGPAGRVDAVVLDNRAAARTLVEHLVAQGYR--------R 117 (263)
T ss_pred HHHHHhCCCCEEEEeCCCCCch-HHHHH-hcCCCEEEECCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc--------e
Confidence 34566788997766 4443322 22332 335666544 23355666666654 8
Q ss_pred EEEeecchh----hchHHHHHHHHhcCCceeec-CccccccchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHhhCC-
Q 017159 219 IGVLATDAT----LSAGFYQEKLQNQGFEVVLP-DKATMEHVIIPTIEA-LNHRD-MEG----ARNLLRIGIQLLLVRA- 286 (376)
Q Consensus 219 VGlLaT~~T----~~s~~Y~~~L~~~G~evv~p-~~~~q~~~l~~~ie~-lk~G~-~~~----a~~~l~~~i~~L~~~g- 286 (376)
|+++++... .+..-|++.++++|+....- -....+. ....+.. ++.+. .+. .......+++.+.+.|
T Consensus 118 i~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~ 196 (263)
T cd06280 118 IGGLFGNASTTGAERRAGYEDAMRRHGLAPDARFVAPTAEA-AEAALAAWLAAPERPEALVASNGLLLLGALRAVRAAGL 196 (263)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHcCCCCChhhcccCHHH-HHHHHHHHhcCCCCCcEEEECCcHHHHHHHHHHHHcCC
Confidence 998866432 11223777888887653210 0011111 1111222 22221 110 1222333444555544
Q ss_pred ---CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 287 ---VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 287 ---aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
-|.-|+|+-..++. ....+ ++..|+ +...+++.+++.+.+.
T Consensus 197 ~~p~di~iig~d~~~~~-~~~~p-~lt~i~~~~~~~g~~a~~~l~~~ 241 (263)
T cd06280 197 RIPQDLALAGFDNDPWT-ELVGP-GITVIEQPVEEIGRAAMSLLLER 241 (263)
T ss_pred CCCCcEEEEEeCChhHH-HhcCC-CceEecCCHHHHHHHHHHHHHHH
Confidence 36777887776644 22222 233343 3456666666665443
No 32
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.78 E-value=0.49 Score=45.88 Aligned_cols=44 Identities=30% Similarity=0.512 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 152 SQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 152 ~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
.+.+.+.++.++++|||+|++.|-.. ....++.+.+++|+|+|.
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLECVPA-ELAKEITEALSIPTIGIG 203 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCCCCEEEec
Confidence 44566777889999999999999965 678999999999999984
No 33
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=90.57 E-value=1.5 Score=42.75 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=66.1
Q ss_pred cccCCeEEEEcCCChHHHHHHHHHHHHHh-hhC---CCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHH
Q 017159 79 LNQANTIGIIGGVSVSSTLNFLGKLVWYS-AKD---AEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQN 154 (376)
Q Consensus 79 ~~~~k~IGIIGGmGp~AT~~f~~kI~~~~-~~~---dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~ 154 (376)
..+.+.||+||=-|.... .||+.+++.. +.. -...+.++ +..+ +..... +...+.
T Consensus 107 ~t~~~~IgViaT~~Tvks-~~y~~~i~~~~~~~~V~~la~p~lV----------------~lvE--~g~~~~--~~~~~~ 165 (269)
T COG0796 107 LTRNGRIGVIATPATVKS-NAYRDLIARFAPDCEVESLACPELV----------------PLVE--EGIRGG--PVALEV 165 (269)
T ss_pred hccCCeEEEEeccchhcc-HHHHHHHHHhCCCCEEEEecCcchH----------------HHHh--cccccC--HHHHHH
Confidence 345668999986666555 5566665533 321 11222221 2221 112222 456666
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh--HHHHhccCC--CCeeccHHHHHHHHHHh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW--HGDVSEGCS--IPFLHVGECVAKELKEA 206 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~--vPvl~Iveat~~~~~~~ 206 (376)
+.+....+...|+|.+|+.|. |+= -+.+++..+ +++++-.+++++.+...
T Consensus 166 l~~~l~~~~~~~~DtlVLGCT--HyPll~~~i~~~~~~~v~lids~~~~a~~~~~~ 219 (269)
T COG0796 166 LKEYLPPLQEAGPDTLVLGCT--HYPLLKPEIQQVLGEHVALIDSGAETARRLARL 219 (269)
T ss_pred HHHHhcchhccCCCEEEEeCc--CcHHHHHHHHHHhCCCceEeCCHHHHHHHHHHH
Confidence 777778888999999999995 543 677887775 99998888887776653
No 34
>PRK07475 hypothetical protein; Provisional
Probab=90.53 E-value=0.73 Score=44.00 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHH
Q 017159 149 GAVSQNLRHKRAFLEQ--AGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVA 200 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~--~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~ 200 (376)
++..+.+.+.++.|.+ .|+|+|++.|.-...+.+++++.+++||++...++.
T Consensus 177 ~~~~~~l~~~~~~l~~~~~~~daIvL~CTeLp~~~~~le~~~glPViDs~t~~~ 230 (245)
T PRK07475 177 EAAEQEVVAAARALLERHPDIGAIVLECTNMPPYAAAIQRATGLPVFDIVTLIN 230 (245)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCEEEEcCcChHHHHHHHHHhcCCCEEeHHHHHH
Confidence 4455567777788864 499999999999988889999989999999876653
No 35
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=90.24 E-value=7.9 Score=37.97 Aligned_cols=40 Identities=28% Similarity=0.229 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCcCCCCceEEEeecchhhc---hHHHHHHHHhcCCceee
Q 017159 199 VAKELKEAKLKPLEAGSGVRIGVLATDATLS---AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 199 t~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~ 246 (376)
+++++.+.|. +||++++...... ...|++.+++.|.+++.
T Consensus 115 ~~~~~~~~g~--------k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~ 157 (336)
T cd06339 115 AAEYARSQGK--------RRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVA 157 (336)
T ss_pred HHHHHHhcCc--------cceEEEecCChHHHHHHHHHHHHHHHcCCceee
Confidence 4455555444 4899997644322 23366778888888764
No 36
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=89.83 E-value=12 Score=34.79 Aligned_cols=162 Identities=11% Similarity=0.106 Sum_probs=82.0
Q ss_pred HHHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc-------------------HHHHHHHHHHh--cCCCCcC
Q 017159 158 KRAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV-------------------GECVAKELKEA--KLKPLEA 213 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~--g~k~~~~ 213 (376)
.++.|.+.++|.|++...... ..++.+++ .++|++.+ ...+++++.+. |.
T Consensus 49 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~----- 122 (275)
T cd06320 49 IAENMINKGYKGLLFSPISDVNLVPAVERAKK-KGIPVVNVNDKLIPNATAFVGTDNKANGVRGAEWIIDKLAEG----- 122 (275)
T ss_pred HHHHHHHhCCCEEEECCCChHHhHHHHHHHHH-CCCeEEEECCCCCCccceEEecCcHHHHHHHHHHHHHHhCCC-----
Confidence 345567779999877543221 23455543 35665443 33345556655 33
Q ss_pred CCCceEEEeecch-----hhchHHHHHHHHhc-CCceeecCc-c-ccccchHHHHHH-Hhc-CChHH----HHHHHHHHH
Q 017159 214 GSGVRIGVLATDA-----TLSAGFYQEKLQNQ-GFEVVLPDK-A-TMEHVIIPTIEA-LNH-RDMEG----ARNLLRIGI 279 (376)
Q Consensus 214 ~~~~rVGlLaT~~-----T~~s~~Y~~~L~~~-G~evv~p~~-~-~q~~~l~~~ie~-lk~-G~~~~----a~~~l~~~i 279 (376)
++|+++.... ..+..-|.+.++++ |+++..... . ..+. ....+.. ++. .+.+. .......++
T Consensus 123 ---~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~ 198 (275)
T cd06320 123 ---GKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPADWDREK-AYDVATTILQRNPDLKAIYCNNDTMALGVV 198 (275)
T ss_pred ---ceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCCCccHHH-HHHHHHHHHHhCCCccEEEECCchhHHHHH
Confidence 4899886421 12223378889998 887653221 1 1111 1111222 222 11110 122333455
Q ss_pred HHHhhCCC--CEEEECCCccccccCCC-CCCCC-eeeehHHHHHHHHHHHHHhc
Q 017159 280 QLLLVRAV--NAVIIGSDEMQGVLPKD-DPLLK-KCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 280 ~~L~~~ga--DaVILGCTElpll~~~~-~~~~v-pvIDp~~~lA~a~v~~a~~~ 329 (376)
+.+.+.|. |..|.|+...|...... .+... .+--+...+++.+++.+...
T Consensus 199 ~al~~~g~~~di~vig~d~~~~~~~~i~~~~~~~ti~~~~~~~g~~a~~~l~~~ 252 (275)
T cd06320 199 EAVKNAGKQGKVLVVGTDGIPEAYKSIRAGELTATVDSFPALIGEVAMEVMLRA 252 (275)
T ss_pred HHHHhcCCCCCeEEEecCCCHHHHHHHHcCCeeEEeccCHHHHHHHHHHHHHHH
Confidence 55666676 88899998888653221 11111 22234456777777766553
No 37
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=89.73 E-value=0.98 Score=42.70 Aligned_cols=50 Identities=24% Similarity=0.181 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeeccHHHHHHHHH
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHVGECVAKELK 204 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iveat~~~~~ 204 (376)
+.++++.|.++|||+||+=|-..|.. -+.+++.+++||+---..+++.+.
T Consensus 167 l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lvAr~~~ 217 (221)
T PF07302_consen 167 LAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLVARLAA 217 (221)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHHHHHHH
Confidence 66778889999999999999999988 678888999999975544444443
No 38
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=89.49 E-value=0.76 Score=43.89 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhh--HHHHhccCCCCeeccHHHHHHHHHH
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAW--HGDVSEGCSIPFLHVGECVAKELKE 205 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~Iveat~~~~~~ 205 (376)
.+.++.+...++|+|+|.|.-.+.+ ++++++.+++||++.-.+++=++.+
T Consensus 171 ~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~W~~Lr 222 (239)
T TIGR02990 171 VEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATAWRCLR 222 (239)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHHHHHHH
Confidence 3334445678999999999999987 8999999999999999888666555
No 39
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.45 E-value=14 Score=34.27 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=45.4
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH-------------------HHHHHHHHHhcCCCCcCCCCceEE
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG-------------------ECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv-------------------eat~~~~~~~g~k~~~~~~~~rVG 220 (376)
+.+.+.++|.|++........++.+++ .++|++.+- ..+++++.+.|. ++|+
T Consensus 52 ~~l~~~~vdgiii~~~~~~~~~~~l~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~g~--------~~i~ 122 (268)
T cd06277 52 SFLEDGKVDGIILLGGISTEYIKEIKE-LGIPFVLVDHYIPNEKADCVLTDNYSGAYAATEYLIEKGH--------RKIG 122 (268)
T ss_pred HHHHHCCCCEEEEeCCCChHHHHHHhh-cCCCEEEEccCCCCCCCCEEEecchHHHHHHHHHHHHCCC--------CcEE
Confidence 446678999998755333333555544 356766542 123445555554 4899
Q ss_pred Eeecchhh-----chHHHHHHHHhcCCce
Q 017159 221 VLATDATL-----SAGFYQEKLQNQGFEV 244 (376)
Q Consensus 221 lLaT~~T~-----~s~~Y~~~L~~~G~ev 244 (376)
+++..... +..-|.+.++++|+++
T Consensus 123 ~i~~~~~~~~~~~R~~gf~~~~~~~~~~~ 151 (268)
T cd06277 123 FVGDPLYSPSFEERYEGYKKALLDHGIPF 151 (268)
T ss_pred EECCCCCCcchHHHHHHHHHHHHHcCCCC
Confidence 99765431 2233788888888754
No 40
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=88.76 E-value=19 Score=33.03 Aligned_cols=158 Identities=11% Similarity=-0.007 Sum_probs=78.7
Q ss_pred HHHHHHcCCcEEEEe-CCCchhhHHHHhccC-----------CCCeec-----cHHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 159 RAFLEQAGARCIVMP-CHISHAWHGDVSEGC-----------SIPFLH-----VGECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 159 ~~~L~~~Gad~IVIa-CNTAH~~~d~L~~~~-----------~vPvl~-----Iveat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
.+.+.+.++|.+++. |+.....++.+++.. .+|.++ ....+++++.+.|. ++|++
T Consensus 48 i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~pvv~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~~i~~ 119 (260)
T cd06286 48 LELLKTKQVDGLILCSRENDWEVIEPYTKYGPIVLCEEYDSKNISSVYIDHYEAFYEALKYLIQKGY--------RKIAY 119 (260)
T ss_pred HHHHHHcCCCEEEEeCCCCCHHHHHHHhcCCCEEEEecccCCCCCEEEECChHHHHHHHHHHHHCCC--------ceEEE
Confidence 345677899988874 443333455555531 122222 13345666776665 39999
Q ss_pred eecchh-----hchHHHHHHHHhcCCcee----ecCccccccchHHHHHHHh-cC-ChHH----HHHHHHHHHHHHhhCC
Q 017159 222 LATDAT-----LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEALN-HR-DMEG----ARNLLRIGIQLLLVRA 286 (376)
Q Consensus 222 LaT~~T-----~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~lk-~G-~~~~----a~~~l~~~i~~L~~~g 286 (376)
++.+.. .+..-|.+.++++|+++. .......+. ....++.+. .+ ..+. .......+++.+.+.|
T Consensus 120 i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g 198 (260)
T cd06286 120 CIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCFTIED-GERIGHQLLKMKDRPDAIFTGSDEVAAGIITEAKKQG 198 (260)
T ss_pred EcCCcccchhHHHHHHHHHHHHHcCCCCChHheEeCCCCHHH-HHHHHHHHHcCCCCCCEEEEcchHHHHHHHHHHHHcC
Confidence 976432 122337788888886541 111111110 111223332 21 1111 1122234445555555
Q ss_pred C----CEEEECCCccccccCCCCCCCCe-eeehHHHHHHHHHHHHHhc
Q 017159 287 V----NAVIIGSDEMQGVLPKDDPLLKK-CIDPMDALARSTVTWARSN 329 (376)
Q Consensus 287 a----DaVILGCTElpll~~~~~~~~vp-vIDp~~~lA~a~v~~a~~~ 329 (376)
. |.-|.|+-..+.. . .+ .+. +--+.+.+++.+++.+.+.
T Consensus 199 ~~ip~di~v~g~d~~~~~-~--~~-~~ttv~~~~~~~g~~a~~~l~~~ 242 (260)
T cd06286 199 IRVPEDLAIIGFDNQPIS-E--LL-GITTIDQPVKELGEKAFELLLNQ 242 (260)
T ss_pred CCCCcceEEEeecCcccc-c--CC-CCcccCCCHHHHHHHHHHHHHHH
Confidence 3 7788888777654 1 11 122 2234566777777777554
No 41
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=88.30 E-value=26 Score=34.04 Aligned_cols=156 Identities=14% Similarity=0.163 Sum_probs=79.3
Q ss_pred HHHHHcCCcEEEEeCCC-chhhHHHHhccCCCC-eec--------------c-----HHHHHHHHHHhcCCCCcCCCCce
Q 017159 160 AFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIP-FLH--------------V-----GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vP-vl~--------------I-----veat~~~~~~~g~k~~~~~~~~r 218 (376)
+.|.+.++|.|++.... ....+..+.+ ++| ++- + ...+++++.+.|++ +
T Consensus 109 ~~l~~~~vdgiIi~~~~~~~~~~~~~~~--~~p~vV~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~--------~ 178 (343)
T PRK10727 109 EQLIRHRCAALVVHAKMIPDAELASLMK--QIPGMVLINRILPGFENRCIALDDRYGAWLATRHLIQQGHT--------R 178 (343)
T ss_pred HHHHhcCCCEEEEecCCCChHHHHHHHh--cCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc--------c
Confidence 44667899998886532 2223444443 233 221 1 12245566666654 8
Q ss_pred EEEeecchh---h--chHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHh
Q 017159 219 IGVLATDAT---L--SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHRD-MEG----ARNLLRIGIQLLL 283 (376)
Q Consensus 219 VGlLaT~~T---~--~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G~-~~~----a~~~l~~~i~~L~ 283 (376)
|++++.+.. . +..-|.+.++++|+++. .......+. -...++. +..+. ++. .......+++.+.
T Consensus 179 I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~ 257 (343)
T PRK10727 179 IGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGEPDESG-GEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLN 257 (343)
T ss_pred EEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeCCCChhH-HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 999975432 1 22338888999987532 221111110 1111222 22222 111 1223334556666
Q ss_pred hCCC----CEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHh
Q 017159 284 VRAV----NAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 284 ~~ga----DaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
+.|. |.-|.|+-..+... ...+. +..| -+...+++.+++.+..
T Consensus 258 ~~G~~vP~disVigfD~~~~~~-~~~p~-lttv~~~~~~~g~~A~~~l~~ 305 (343)
T PRK10727 258 DNGIDVPGEISLIGFDDVLVSR-YVRPR-LTTVRYPIVTMATQAAELALA 305 (343)
T ss_pred HcCCCCCcceeEEeecCcHHHH-hcCCC-CeeeeCCHHHHHHHHHHHHHH
Confidence 6664 88899998887542 12222 3333 3456677777777654
No 42
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=88.13 E-value=22 Score=32.99 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=77.3
Q ss_pred HHHHHcCCcEEEE-eCCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.+.+.++|.|++ +|+.....++++.+ .++|++.+ ...+++.+.+.|. ++|
T Consensus 58 ~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~a~~l~~~g~--------~~i 128 (275)
T cd06295 58 RYLASGRADGVILIGQHDQDPLPERLAE-TGLPFVVWGRPLPGQPYCYVGSDNVGGGRLATEHLLARGR--------RRI 128 (275)
T ss_pred HHHHhCCCCEEEEeCCCCChHHHHHHHh-CCCCEEEECCccCCCCCCEEEECcHHHHHHHHHHHHHCCC--------CeE
Confidence 3455678998865 56544344565543 34555432 2334555555554 489
Q ss_pred EEeecchh-----hchHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcCC-hH----HHHHHHHHHHHHHhh
Q 017159 220 GVLATDAT-----LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHRD-ME----GARNLLRIGIQLLLV 284 (376)
Q Consensus 220 GlLaT~~T-----~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G~-~~----~a~~~l~~~i~~L~~ 284 (376)
++++.+.. .+..-|.+.++++|+++. .......+. ....++. ++.+. .+ ........+++.+.+
T Consensus 129 ~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~~l~~ 207 (275)
T cd06295 129 AFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTEES-GRAAMRALLERGPDFDAVFAASDLMALGALRALRE 207 (275)
T ss_pred EEEcCCCCcchhHHHHHHHHHHHHHcCCCCChhhEEeccCCHHH-HHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHH
Confidence 99876433 122337788888875432 222111111 1112222 33221 11 111223344455555
Q ss_pred CCC----CEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 285 RAV----NAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 285 ~ga----DaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.|. |.-|+|+-..+..... .+ .+..|+ +...+++.+++.+..
T Consensus 208 ~g~~ip~~i~ii~~d~~~~~~~~-~~-~~~~v~~~~~~~g~~a~~~l~~ 254 (275)
T cd06295 208 AGRRVPEDVAVVGFDDIPLAAYA-DP-PLTTVRQDIEEAGRLLVDLLLA 254 (275)
T ss_pred hCCCCccceEEEeeCCchHhhcc-CC-CceEEeCcHHHHHHHHHHHHHH
Confidence 443 6778888877755322 11 123333 455677777766544
No 43
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=88.11 E-value=10 Score=37.38 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=24.7
Q ss_pred HHHHHHH-cCCcEEEEeCCCchhh-HHHHhccCCCCeecc
Q 017159 158 KRAFLEQ-AGARCIVMPCHISHAW-HGDVSEGCSIPFLHV 195 (376)
Q Consensus 158 ~~~~L~~-~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I 195 (376)
.+++|.+ -|+++|+-++++.... ...+-+..++|+|..
T Consensus 60 ~a~~li~~d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 99 (357)
T cd06337 60 VAQELILTDKVDLLLAGGTPDTTNPVSDQCEANGVPCIST 99 (357)
T ss_pred HHHHHHhccCccEEEecCCcchhhHHHHHHHHhCCCeEEe
Confidence 3445554 4899998888776554 334545668888774
No 44
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=88.04 E-value=7.6 Score=37.69 Aligned_cols=168 Identities=11% Similarity=0.071 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHH----------Hhc-------------cCCCCeeccHHHHHHHHHH
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGD----------VSE-------------GCSIPFLHVGECVAKELKE 205 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~----------L~~-------------~~~vPvl~Iveat~~~~~~ 205 (376)
+.......+.+..+++.|.+ ||.+|.|-...+.+ +++ ..+..++|+.+-..+.+..
T Consensus 53 ~~~~~l~~~nl~~~~~~g~~-iv~~C~~C~~~l~~~~~~l~~~~~~~~~v~~~~~~~g~~~~~~~~v~~~~e~L~~~~~~ 131 (290)
T TIGR03288 53 KTWLTLAARNLVIAEEMGKD-ILTVCNGCYGSLFEANHLLKENPELRDKVNEKLAEIGREYKGTINVRHLAEFLYKDIGV 131 (290)
T ss_pred HHHHHHHHHHHHHHHHcCCC-EEEECHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCccCCCcceeeHHHHHHHHHhH
Confidence 44445555666667888998 88899654333211 111 1136799998877654322
Q ss_pred hcCCC-CcCCCCceEEEeecchh------------hchHHHHHHHHhcCCceeecCc--cccccchHHHHHHHhcCChHH
Q 017159 206 AKLKP-LEAGSGVRIGVLATDAT------------LSAGFYQEKLQNQGFEVVLPDK--ATMEHVIIPTIEALNHRDMEG 270 (376)
Q Consensus 206 ~g~k~-~~~~~~~rVGlLaT~~T------------~~s~~Y~~~L~~~G~evv~p~~--~~q~~~l~~~ie~lk~G~~~~ 270 (376)
..++. ...+.+.+|..---=.. -......+.++..|.+++-... .|=. .- ..+..+..+.
T Consensus 132 ~~l~~~~~~~~~~kV~yh~pC~l~r~~~~~~~~~~~~p~~l~~ll~~~g~~~v~~~~~~~CCG--~g---G~~~~~~~~~ 206 (290)
T TIGR03288 132 DKIKEKVTKPLNLNVAVHYGCHLLKPSDERHLGSPERPKILDELVEATGAKSVDYKDKMMCCG--AG---GGVRSRDLDV 206 (290)
T ss_pred HHHHHHhcCCCCceEEEeCcccccccccccCCCCccchHHHHHHHHHhCceeeecCCCCcccC--CC---ccccccCHHH
Confidence 11100 00011235654311111 1111234555556777653321 1111 00 0011133344
Q ss_pred HHHHHHHHHHHHhhCCCCEEEECCCccccccCC-------C--CCCCCeeeehHHHHHHHH
Q 017159 271 ARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPK-------D--DPLLKKCIDPMDALARST 322 (376)
Q Consensus 271 a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~-------~--~~~~vpvIDp~~~lA~a~ 322 (376)
+.+..++.++.+.+.|+|.||-.|..=-.-++. . ...+++++++++.++++.
T Consensus 207 s~~l~~~k~~~~~~~gad~ivt~Cp~C~~~l~~~~~~~~~~~g~~~~~~V~h~~elLa~al 267 (290)
T TIGR03288 207 ALDMTKEKLENMKEAGADCIVNVCPFCHLQFDRGQIEIKEKFGEEYNIPVLHYSQLLGLAM 267 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCchHHHHHHHHHHHHHHhcCCCCCcCeeeHHHHHHHHc
Confidence 566667777888888999999999764433321 0 113578999999999876
No 45
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=87.80 E-value=5.1 Score=32.79 Aligned_cols=75 Identities=27% Similarity=0.435 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh---hHHHHhccCCCC-----eeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA---WHGDVSEGCSIP-----FLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~---~~d~L~~~~~vP-----vl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
..+.++.|++.|..++++.-|+... +.+.|+ ..+++ |++-..++++.+++.. ..++|-++|+++
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~-~~Gi~~~~~~i~ts~~~~~~~l~~~~-------~~~~v~vlG~~~ 90 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLK-KLGIPVDEDEIITSGMAAAEYLKEHK-------GGKKVYVLGSDG 90 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHH-HTTTT--GGGEEEHHHHHHHHHHHHT-------TSSEEEEES-HH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHH-hcCcCCCcCEEEChHHHHHHHHHhcC-------CCCEEEEEcCHH
Confidence 4555677899999998888887655 255553 34554 7888889999999841 346999999975
Q ss_pred hhchHHHHHHHHhcCCc
Q 017159 227 TLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 227 T~~s~~Y~~~L~~~G~e 243 (376)
..+.+++.|++
T Consensus 91 ------l~~~l~~~G~e 101 (101)
T PF13344_consen 91 ------LREELREAGFE 101 (101)
T ss_dssp ------HHHHHHHTTEE
T ss_pred ------HHHHHHHcCCC
Confidence 45566766653
No 46
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=87.75 E-value=11 Score=39.45 Aligned_cols=162 Identities=10% Similarity=0.081 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
+...+...+.++.+++.|+|.||.+|.+-...+...-...+++++|+.+-..+ .|..+.. +.+.+|.+=-. =.+
T Consensus 313 ~~~~~~~~~ni~~~~~~~~~~IVt~c~~C~~~l~~~y~~~~~~v~~i~e~L~~----~~~~~~~-~~~~~v~~Hdp-C~~ 386 (486)
T PRK06259 313 DVAEELKKKNLEIFNKLDVDTVVTICAGCGSTLKNDYKEKEFNVMDITEVLVE----VGLEKYK-PLDITVTYHDP-CHL 386 (486)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEECCchHHHHHHHhccccccceeeHHHHHHH----cCCccCC-CCCceEEEECc-hhc
Confidence 56666677778888999999999999876544443212235789998876654 2322111 11234553211 111
Q ss_pred c--hHHHH---HHHHhc-CCceeecCcc--ccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccc
Q 017159 229 S--AGFYQ---EKLQNQ-GFEVVLPDKA--TMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGV 300 (376)
Q Consensus 229 ~--s~~Y~---~~L~~~-G~evv~p~~~--~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll 300 (376)
. .++|+ +.|++. |++++..... |=. .-. .+.....+.+.+..+.-++.+.+.|+|.||-.|.-=-.-
T Consensus 387 ~r~~~~~~~pr~lL~~i~g~~~ve~~~~~~CCG--~gG---~~~~~~~e~s~~~~~~k~~~~~~~ga~~ivt~Cp~C~~q 461 (486)
T PRK06259 387 RRGQGIYEEPRKILRSIPGLEFVEMEIPDQCCG--AGG---GVRSGKPEIAEALGKRKAEMIRETGADYVITVCPFCEYH 461 (486)
T ss_pred cccCCchhhHHHHHHhCCCceEEeCCCCCCCcC--cch---hceeCCHHHHHHHHHHHHHHHHHcCCCEEEecCccHHHH
Confidence 1 22333 455543 7676543211 100 000 011122233555556666777778999999999531111
Q ss_pred cCC---CCCCCCeeeehHHHHHHH
Q 017159 301 LPK---DDPLLKKCIDPMDALARS 321 (376)
Q Consensus 301 ~~~---~~~~~vpvIDp~~~lA~a 321 (376)
+.. ....++++.|+++.++++
T Consensus 462 l~~~~~~~~~~~~v~h~~ell~~~ 485 (486)
T PRK06259 462 IRDSLKKYSEDIPVMNIVSLLDKV 485 (486)
T ss_pred HHHHHHhcCCCCeeeeHHHHHHhh
Confidence 111 112357899999999875
No 47
>PRK09526 lacI lac repressor; Reviewed
Probab=87.65 E-value=28 Score=33.64 Aligned_cols=158 Identities=14% Similarity=0.073 Sum_probs=78.6
Q ss_pred HHHHHHcCCcEEEEe-CCCchhhHHHHhc-cCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMP-CHISHAWHGDVSE-GCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIa-CNTAH~~~d~L~~-~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|.+.++|.|++. +.. +.....+.. ..++|++-+ ...+++++.+.|++ +
T Consensus 113 l~~l~~~~vdGiii~~~~~-~~~~~~~~~~~~~iPvV~~d~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~ 183 (342)
T PRK09526 113 VNELLAQRVSGVIINVPLE-DADAEKIVADCADVPCLFLDVSPQSPVNSVSFDPEDGTRLGVEHLVELGHQ--------R 183 (342)
T ss_pred HHHHHhcCCCEEEEecCCC-cchHHHHHhhcCCCCEEEEeccCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------e
Confidence 345777899999884 322 222333322 235665422 23456677776654 9
Q ss_pred EEEeecchh-----hchHHHHHHHHhcCCceee--cCccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHhhC
Q 017159 219 IGVLATDAT-----LSAGFYQEKLQNQGFEVVL--PDKATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLLLVR 285 (376)
Q Consensus 219 VGlLaT~~T-----~~s~~Y~~~L~~~G~evv~--p~~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L~~~ 285 (376)
|++++.... .+..-|++.++++|++... ......+. -...++. ++.+ .++. .......+++.+.+.
T Consensus 184 I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~ 262 (342)
T PRK09526 184 IALLAGPESSVSARLRLAGWLEYLTDYQLQPIAVREGDWSAMS-GYQQTLQMLREGPVPSAILVANDQMALGVLRALHES 262 (342)
T ss_pred EEEEeCCCccccHHHHHHHHHHHHHHcCCCcceEEeCCCchHH-HHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHc
Confidence 999964321 1223388889999986432 11111110 1111222 2222 1111 122233455566665
Q ss_pred CC----CEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHh
Q 017159 286 AV----NAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 286 ga----DaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
|. |.-|+|.-..+..... .+. +..| -+.+.+++.+++.+..
T Consensus 263 g~~vP~disvig~d~~~~~~~~-~p~-lttv~~~~~~~g~~A~~~L~~ 308 (342)
T PRK09526 263 GLRVPGQISVIGYDDTEDSSYF-IPP-LTTIKQDFRLLGKEAVDRLLA 308 (342)
T ss_pred CCCCCCceEEEeeCCCchhccc-CCC-ceEecCCHHHHHHHHHHHHHH
Confidence 53 7778888776643211 111 2223 2456677777776654
No 48
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=87.61 E-value=28 Score=33.62 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=78.6
Q ss_pred HHHHHcCCcEEEEeCCCc--hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 160 AFLEQAGARCIVMPCHIS--HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTA--H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
+.|.+.++|.|++.-.+. ...++.+++ .++|++-+ ...+++++.+.|++ +
T Consensus 114 ~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~ 184 (342)
T PRK10014 114 STLLNQGVDGVVIAGAAGSSDDLREMAEE-KGIPVVFASRASYLDDVDTVRPDNMQAAQLLTEHLIRNGHQ--------R 184 (342)
T ss_pred HHHHhCCCCEEEEeCCCCCcHHHHHHHhh-cCCCEEEEecCCCCCCCCEEEeCCHHHHHHHHHHHHHCCCC--------E
Confidence 446678899888754332 233555544 35565432 23455667666654 9
Q ss_pred EEEeecchhh-----chHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHh
Q 017159 219 IGVLATDATL-----SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLLL 283 (376)
Q Consensus 219 VGlLaT~~T~-----~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L~ 283 (376)
|++++.+.+. +..-|.+.++++|+++. .......+. ....+.. +..+ .++. .......+++.+.
T Consensus 185 I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~~l~ 263 (342)
T PRK10014 185 IAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTSSQKQ-AAEAITALLRHNPTISAVVCYNETIAMGAWFGLL 263 (342)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCCCChHH-HHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHHH
Confidence 9999754332 22238888988887532 111111110 1111222 2222 1110 1112222333444
Q ss_pred hCCC-------------CEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 284 VRAV-------------NAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 284 ~~ga-------------DaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
+.|. |.-|.|+...+... ...+ .+..|+ +...+++.+++.+..
T Consensus 264 ~~g~~vp~~~~~~~~p~di~vigfd~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~L~~ 320 (342)
T PRK10014 264 RAGRQSGESGVDRYFEQQVALAAFTDVPEAE-LDDP-PLTWASTPAREIGRTLADRMMQ 320 (342)
T ss_pred HcCCCCCCccccccccCceEEEEecCchHHh-cCCC-CceeeecCHHHHHHHHHHHHHH
Confidence 4332 88899998887542 1122 233343 456677777777654
No 49
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=87.51 E-value=16 Score=33.93 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=43.7
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH-----------------------------HHHHHHHHHh--c
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG-----------------------------ECVAKELKEA--K 207 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv-----------------------------eat~~~~~~~--g 207 (376)
++.|.+.++|.|++....+. .... ....++|++-+- ...++.+.+. |
T Consensus 53 ~~~l~~~~vd~iI~~~~~~~-~~~~-~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 130 (281)
T cd06325 53 ARKFVADKPDLIVAIATPAA-QAAA-NATKDIPIVFTAVTDPVGAGLVKSLEKPGGNVTGVSDLVPVETQLELLKKLLPD 130 (281)
T ss_pred HHHHHhcCCCEEEEcCcHHH-HHHH-HcCCCCCEEEEecCCccccccccccccCCCceeCeecccchHHHHHHHHHHCCC
Confidence 34566679998888543222 2222 334567776542 1233455554 4
Q ss_pred CCCCcCCCCceEEEeecchh----hchHHHHHHHHhcCCceee
Q 017159 208 LKPLEAGSGVRIGVLATDAT----LSAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 208 ~k~~~~~~~~rVGlLaT~~T----~~s~~Y~~~L~~~G~evv~ 246 (376)
. ++|+++..+.. -...-|++.+++.|+++..
T Consensus 131 ~--------~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~ 165 (281)
T cd06325 131 A--------KTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVE 165 (281)
T ss_pred C--------cEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEE
Confidence 4 49999865332 1123377778888887653
No 50
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=87.03 E-value=26 Score=34.77 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=102.9
Q ss_pred cCCeEEEEc--CCChHHHHHHHHHHHHHhh---hCCCCCCCeEeecCCcchhHHhhhc--hhhhccccccCcchHHHHHH
Q 017159 81 QANTIGIIG--GVSVSSTLNFLGKLVWYSA---KDAEECPPFVVCNDPALNEELFHAS--VHSLKSKTVQLDHIRGAVSQ 153 (376)
Q Consensus 81 ~~k~IGIIG--GmGp~AT~~f~~kI~~~~~---~~dq~~~p~il~s~p~ipd~l~~~s--~~~~~~~~~~~~~~~~~i~~ 153 (376)
+|.-+=|+| |+|=-.- .++..+.-+ ..|++..|++....|.-|+.--.|. ...+.....+.+ ...+
T Consensus 60 Rmp~lLivG~snnGKT~I---i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~----~~~~ 132 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMI---IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD----RVAK 132 (302)
T ss_pred CCCceEEecCCCCcHHHH---HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC----CHHH
Confidence 466788999 7776554 355544443 2566789999999998876432222 111211111222 2223
Q ss_pred HHHHHHHHHHHcCCcEEEEeCC------Cchh---h---HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 154 NLRHKRAFLEQAGARCIVMPCH------ISHA---W---HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 154 ~l~~~~~~L~~~Gad~IVIaCN------TAH~---~---~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
.-......|...|+..++|==. |... + +..|.+.+.+|++.+...-+..+...... - ..|+-.
T Consensus 133 ~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q----L-a~RF~~ 207 (302)
T PF05621_consen 133 LEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ----L-ASRFEP 207 (302)
T ss_pred HHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH----H-HhccCC
Confidence 3333446788999999998422 2111 2 44555678899998765443333322110 0 124444
Q ss_pred eecchhhchHHHHHHHHhc--CCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEE
Q 017159 222 LATDATLSAGFYQEKLQNQ--GFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAV 290 (376)
Q Consensus 222 LaT~~T~~s~~Y~~~L~~~--G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaV 290 (376)
+.-+-.-...-|++.+... .+....|+.-.. ..+...+.+.-.|..-+..+.+..+...-.+.|.+.|
T Consensus 208 ~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~-~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E~I 277 (302)
T PF05621_consen 208 FELPRWELDEEFRRLLASFERALPLRKPSNLAS-PELARRIHERSEGLIGELSRLLNAAAIAAIRSGEERI 277 (302)
T ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCcee
Confidence 4444443445577777542 233333332111 1133334445556655555666666555556676654
No 51
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=86.84 E-value=7.6 Score=37.67 Aligned_cols=81 Identities=15% Similarity=-0.060 Sum_probs=45.6
Q ss_pred HHHHHHHc-CCcEEEEeCCCchhh-HHHHhccCCCCeeccH----------------------HHHHHHHHHhcCCCCcC
Q 017159 158 KRAFLEQA-GARCIVMPCHISHAW-HGDVSEGCSIPFLHVG----------------------ECVAKELKEAKLKPLEA 213 (376)
Q Consensus 158 ~~~~L~~~-Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iv----------------------eat~~~~~~~g~k~~~~ 213 (376)
.+++|.+. ||++|+=+.++.... ...+.+..++|+|+.. ...++.+...+.
T Consensus 58 ~a~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----- 132 (333)
T cd06331 58 AARRLIRDDKVDAVFGCYTSASRKAVLPVVERGRGLLFYPTQYEGGECSPNVFYTGATPNQQLLPLIPYLMEKYG----- 132 (333)
T ss_pred HHHHHHhccCCcEEEecccHHHHHHHHHHHHhcCceEEeCCCCCCCcCCCCeEEccCChHHhHHHHHHHHHHhcC-----
Confidence 44556555 888777665554332 3334445577776521 123344444332
Q ss_pred CCCceEEEeecchhhc---hHHHHHHHHhcCCceee
Q 017159 214 GSGVRIGVLATDATLS---AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 214 ~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~ 246 (376)
+||+++..+...- ...+++.+++.|.+++.
T Consensus 133 ---~~v~il~~d~~~g~~~~~~~~~~~~~~G~~vv~ 165 (333)
T cd06331 133 ---KRFYLIGSDYVWPRESNRIARALLEELGGEVVG 165 (333)
T ss_pred ---CeEEEECCCchhHHHHHHHHHHHHHHcCCEEEE
Confidence 4888887754322 24477777877877763
No 52
>PRK09492 treR trehalose repressor; Provisional
Probab=86.82 E-value=29 Score=33.04 Aligned_cols=157 Identities=10% Similarity=0.027 Sum_probs=77.8
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-----------------HHHHHHHHHHhcCCCCcCCCCceEEEe
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-----------------GECVAKELKEAKLKPLEAGSGVRIGVL 222 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-----------------veat~~~~~~~g~k~~~~~~~~rVGlL 222 (376)
+.|.+.++|.+++...+. .-.+.+.+ ..+|++-+ +..+++++.+.|++ +||++
T Consensus 112 ~~l~~~~vdgiIi~~~~~-~~~~~l~~-~~~pvv~i~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I~~i 181 (315)
T PRK09492 112 GVLKRRNVDGVILFGFTG-ITEEMLAP-WQDKLVLLARDAKGFSSVCYDDEGAIKLLMQRLYDQGHR--------HISYL 181 (315)
T ss_pred HHHHhcCCCEEEEeCCCc-ccHHHHHh-cCCCEEEEeccCCCCcEEEECcHHHHHHHHHHHHHcCCC--------eEEEE
Confidence 456778899888754321 11233332 12233222 23456777777764 99999
Q ss_pred ecc-h---h--hchHHHHHHHHhcCCceeecC-ccccccchHHHHHHHhcCChH----HHHHHHHHHHHHHhhCCC-CEE
Q 017159 223 ATD-A---T--LSAGFYQEKLQNQGFEVVLPD-KATMEHVIIPTIEALNHRDME----GARNLLRIGIQLLLVRAV-NAV 290 (376)
Q Consensus 223 aT~-~---T--~~s~~Y~~~L~~~G~evv~p~-~~~q~~~l~~~ie~lk~G~~~----~a~~~l~~~i~~L~~~ga-DaV 290 (376)
+.. . + .+..-|.+.++++|+++.... ....+. -...++.+.....+ ........+++.+.+.|. |.-
T Consensus 182 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ai~~~~D~~A~g~~~al~~~g~~dis 260 (315)
T PRK09492 182 GVDHSDVTTGKRRHQAYLAFCKQHKLTPVAALGGLSMQS-GYELVAKVLTPETTALVCATDTLALGASKYLQEQGRDDIQ 260 (315)
T ss_pred cCCcccchhHHHHHHHHHHHHHHcCCCceeecCCCCchH-HHHHHHHHhhcCCCEEEEcCcHHHHHHHHHHHHcCCCceE
Confidence 742 1 1 222348889999998754321 111110 11122222212211 011222334455555553 677
Q ss_pred EECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 291 IIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 291 ILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
|.|..+.++.. ...+. +..|+ +.+.+++.+++++.+.
T Consensus 261 vig~d~~~~~~-~~~p~-lttv~~~~~~~g~~A~~~l~~~ 298 (315)
T PRK09492 261 VAGVGNTPLLK-FLFPN-ILSVDPGYAEAGRQAAQQLIDQ 298 (315)
T ss_pred EEeeCchhHhh-hcCCC-CceecccHHHHHHHHHHHHHHH
Confidence 88888877532 11221 23333 3466777777776553
No 53
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=86.64 E-value=31 Score=33.06 Aligned_cols=158 Identities=15% Similarity=0.170 Sum_probs=78.9
Q ss_pred HHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.+++.+.. .....+.+....++|++-+ ...+++++...|++ +|
T Consensus 106 ~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i~~~~~~~~~~~v~~d~~~~~~~a~~~L~~~G~~--------~I 177 (327)
T PRK10423 106 ETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGYT--------RI 177 (327)
T ss_pred HHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHcCCC--------eE
Confidence 44667899988875532 2222344443235665433 23345566666654 99
Q ss_pred EEeecchh-----hchHHHHHHHHhcCCcee----ecCccccccchHHHHHHH-hcCC-hHH----HHHHHHHHHHHHhh
Q 017159 220 GVLATDAT-----LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEAL-NHRD-MEG----ARNLLRIGIQLLLV 284 (376)
Q Consensus 220 GlLaT~~T-----~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~l-k~G~-~~~----a~~~l~~~i~~L~~ 284 (376)
++++.+.. .+..-|.+.++++|+++. .......+. -...++.+ +.+. ++. .......+++.+.+
T Consensus 178 ~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~~l~~ 256 (327)
T PRK10423 178 ACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNG-GFDAMQQLLALPLRPQAVFTGNDAMAVGVYQALYQ 256 (327)
T ss_pred EEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEeCCCChHH-HHHHHHHHhcCCCCCCEEEEcCcHHHHHHHHHHHH
Confidence 99965432 122337888998887542 111111110 11112222 2221 111 11222345555655
Q ss_pred CCC----CEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 285 RAV----NAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 285 ~ga----DaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.|. |.-|.|+-..++... ..+ .+..|+ +...+++.+++.+..
T Consensus 257 ~g~~vP~dvsvigfd~~~~~~~-~~p-~lttv~~~~~~~g~~A~~~l~~ 303 (327)
T PRK10423 257 AGLSVPQDIAVIGYDDIELARY-MTP-PLTTIHQPKDELGELAIDVLIH 303 (327)
T ss_pred cCCCCCCceEEEEeCChhHHhh-CCC-CCceeeCCHHHHHHHHHHHHHH
Confidence 554 788888888765421 112 233343 356677777766654
No 54
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=86.59 E-value=3.7 Score=40.30 Aligned_cols=105 Identities=20% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.|+.|-.+|-.-.++.+|..||........ ..++++.-..+- .. ....++.+++ ++.
T Consensus 113 pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa---~~--------------~~g~deAI~R----a~a 169 (285)
T TIGR02317 113 PKRCGHLPGKELVSREEMVDKIAAAVDAKR--DEDFVIIARTDA---RA--------------VEGLDAAIER----AKA 169 (285)
T ss_pred ccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCEEEEEEcCc---cc--------------ccCHHHHHHH----HHH
Confidence 466677777666788899999988775332 256776554321 00 0011343333 345
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhccCCCCee-ccHH------HHHHHHHHhcCC
Q 017159 162 LEQAGARCIVMPCHISHAWHGDVSEGCSIPFL-HVGE------CVAKELKEAKLK 209 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl-~Ive------at~~~~~~~g~k 209 (376)
..++|||+|.+++-+.-..+.++.+.+++|++ +++. ...+++.+.|++
T Consensus 170 y~~AGAD~vfi~g~~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~ 224 (285)
T TIGR02317 170 YVEAGADMIFPEALTSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYK 224 (285)
T ss_pred HHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence 66799999999997755557888888888985 5542 257778888774
No 55
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=86.57 E-value=14 Score=33.98 Aligned_cols=79 Identities=25% Similarity=0.352 Sum_probs=43.5
Q ss_pred HHHHHHc-CCcEEEEeCCCchhh-HHHHhccCCCCeeccH--------------------------HHHHHHHHHhcCCC
Q 017159 159 RAFLEQA-GARCIVMPCHISHAW-HGDVSEGCSIPFLHVG--------------------------ECVAKELKEAKLKP 210 (376)
Q Consensus 159 ~~~L~~~-Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iv--------------------------eat~~~~~~~g~k~ 210 (376)
++.|.+. |+++|+.++.+.... +..+.+..++|+|.+. ...++.++..|.
T Consensus 59 ~~~l~~~~~v~~iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 136 (299)
T cd04509 59 ARRLCQQEGVDALVGPVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNW-- 136 (299)
T ss_pred HHHHhcccCceEEEcCCCcHHHHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCC--
Confidence 3445555 899888876542221 3344444567766642 223344444433
Q ss_pred CcCCCCceEEEeecchhh---chHHHHHHHHhcCCcee
Q 017159 211 LEAGSGVRIGVLATDATL---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 211 ~~~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv 245 (376)
++|++++.+... ....|++.+++.|++++
T Consensus 137 ------~~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~ 168 (299)
T cd04509 137 ------KKVAILYDDDSYGRGLLEAFKAAFKKKGGTVV 168 (299)
T ss_pred ------cEEEEEecCchHHHHHHHHHHHHHHHcCCEEE
Confidence 488888775431 12346677777776654
No 56
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=86.56 E-value=31 Score=33.10 Aligned_cols=159 Identities=11% Similarity=0.071 Sum_probs=80.8
Q ss_pred HHHHHHcCCcEEEEeCCC--chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCc
Q 017159 159 RAFLEQAGARCIVMPCHI--SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNT--AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~ 217 (376)
.+.|.+.++|.|++.... ....++.+++ .++|++-+ +..+++++.+.|++
T Consensus 109 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~dn~~~~~~~~~~L~~~G~~-------- 179 (327)
T TIGR02417 109 IENLLARQVDALIVASCMPPEDAYYQKLQN-EGLPVVALDRSLDDEHFCSVISDDVDAAAELIERLLSQHAD-------- 179 (327)
T ss_pred HHHHHHcCCCEEEEeCCCCCChHHHHHHHh-cCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCC--------
Confidence 345677899988775432 2344556543 35665533 12345566666654
Q ss_pred eEEEeecchhh-----chHHHHHHHHhcCCcee--ecCccccccchHHHHHHH-hc-C-ChHH----HHHHHHHHHHHHh
Q 017159 218 RIGVLATDATL-----SAGFYQEKLQNQGFEVV--LPDKATMEHVIIPTIEAL-NH-R-DMEG----ARNLLRIGIQLLL 283 (376)
Q Consensus 218 rVGlLaT~~T~-----~s~~Y~~~L~~~G~evv--~p~~~~q~~~l~~~ie~l-k~-G-~~~~----a~~~l~~~i~~L~ 283 (376)
+|++++.+... +..-|.+.++++|++.. .......+. -...++++ .. + .++. .......+++.+.
T Consensus 180 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~Ai~~~~D~~A~g~~~al~ 258 (327)
T TIGR02417 180 EFWYLGAQPELSVSRDRLAGFRQALKQATLEVEWVYGGNYSRES-GYQMFAKLCARLGRLPQALFTTSYTLLEGVLDYML 258 (327)
T ss_pred eEEEEeCcccchhHHHHHHHHHHHHHHcCCChHhEEeCCCChHH-HHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHH
Confidence 99999754321 22338888888887532 111111111 11112222 22 1 1111 1122233444454
Q ss_pred hCC---CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 284 VRA---VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 284 ~~g---aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
+.| -|.-|.|+-..++.. ...+ .+..|+ +.+.+++.+++.+...
T Consensus 259 ~~g~vP~dvsvigfd~~~~~~-~~~p-~lTti~~~~~~~g~~a~~~l~~~ 306 (327)
T TIGR02417 259 ERPLLDSQLHLATFGDNYLLD-FLPL-PINSVAQQHRQLAWHALELALAA 306 (327)
T ss_pred HcCCCCCcceEEEECCchHHH-ccCC-CceEEeCCHHHHHHHHHHHHHHH
Confidence 444 377888887766432 1122 233343 5677888888877553
No 57
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=86.15 E-value=26 Score=33.47 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=21.9
Q ss_pred HHHHHHHc-CCcEEEEeCCCchhh--HHHHhccCCCCeecc
Q 017159 158 KRAFLEQA-GARCIVMPCHISHAW--HGDVSEGCSIPFLHV 195 (376)
Q Consensus 158 ~~~~L~~~-Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~I 195 (376)
.++.|.+. ++++|+.++.+.+.. .+.+ +..++|++..
T Consensus 56 ~~~~l~~~~~v~~iig~~~s~~~~~~~~~~-~~~~ip~v~~ 95 (333)
T cd06332 56 AARKLIEQDKVDVVVGPVFSNVALAVVPSL-TESGTFLISP 95 (333)
T ss_pred HHHHHHHHcCCcEEEcCCccHHHHHHHHHH-hhcCCeEEec
Confidence 34455544 999988875544322 3343 3457887765
No 58
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=85.97 E-value=10 Score=36.89 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=35.1
Q ss_pred ceEEEeecchhhch---HHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 217 VRIGVLATDATLSA---GFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 217 ~rVGlLaT~~T~~s---~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
+||+++..+...-. ..+++.+++.|++++.... + ..+. ..+...+..+.+.++|+|+++
T Consensus 145 ~~va~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~------~-------~~~~-----~d~~~~v~~l~~~~~d~v~~~ 206 (344)
T cd06345 145 KTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVER------F-------SPDT-----TDFTPILQQIKAADPDVIIAG 206 (344)
T ss_pred ceEEEEecCchhhhHHHHHHHHHHHHcCCeEEEEEe------c-------CCCC-----CchHHHHHHHHhcCCCEEEEe
Confidence 47888777553322 2245666666776553111 0 0011 124455556777889999999
Q ss_pred CCc
Q 017159 294 SDE 296 (376)
Q Consensus 294 CTE 296 (376)
++.
T Consensus 207 ~~~ 209 (344)
T cd06345 207 FSG 209 (344)
T ss_pred ecC
Confidence 875
No 59
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=85.93 E-value=38 Score=33.44 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=37.3
Q ss_pred ceEEEeecchhh---chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 217 VRIGVLATDATL---SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 217 ~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
+||++++-+... ....+++.+++.|++++.... + . .+. .-+...+.++.+.++|+|+++
T Consensus 135 k~v~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~------~-----~--~~~-----~D~s~~v~~l~~~~pDav~~~ 196 (359)
T TIGR03407 135 KRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDY------T-----P--LGH-----TDFQTIINKIKAFKPDVVFNT 196 (359)
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHcCCEEEeeEE------e-----c--CCh-----HhHHHHHHHHHHhCCCEEEEe
Confidence 489998865422 223477888888988764211 0 0 011 224455666777889988876
Q ss_pred CCc
Q 017159 294 SDE 296 (376)
Q Consensus 294 CTE 296 (376)
.+.
T Consensus 197 ~~~ 199 (359)
T TIGR03407 197 LNG 199 (359)
T ss_pred ccC
Confidence 554
No 60
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=85.82 E-value=18 Score=33.21 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=44.0
Q ss_pred HHHHHHcCCcEEEEeCCCchh--hHHHHhccCCCCeecc-------------------------HHHHHHHHHHhcCCCC
Q 017159 159 RAFLEQAGARCIVMPCHISHA--WHGDVSEGCSIPFLHV-------------------------GECVAKELKEAKLKPL 211 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~--~~d~L~~~~~vPvl~I-------------------------veat~~~~~~~g~k~~ 211 (376)
++.|.+.++++|+.+..+... ..+.+ +..++|++.. ....++.++..+
T Consensus 59 ~~~l~~~~v~~iig~~~~~~~~~~~~~~-~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 133 (298)
T cd06268 59 ARELVDDGVDAVIGPLSSGVALAAAPVA-EEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKG---- 133 (298)
T ss_pred HHHHHhCCceEEEcCCcchhHHhhHHHH-HhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhc----
Confidence 344555699998877655322 23333 3346676653 123344455543
Q ss_pred cCCCCceEEEeecchhhc---hHHHHHHHHhcCCcee
Q 017159 212 EAGSGVRIGVLATDATLS---AGFYQEKLQNQGFEVV 245 (376)
Q Consensus 212 ~~~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv 245 (376)
..++|++++.+.... ...|++.++++|++++
T Consensus 134 ---~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~ 167 (298)
T cd06268 134 ---KVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVV 167 (298)
T ss_pred ---CCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEE
Confidence 124899888764322 2335667777787654
No 61
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=85.31 E-value=22 Score=31.61 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecchh-h---chHHHHHHHHhcCCcee
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDAT-L---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T-~---~s~~Y~~~L~~~G~evv 245 (376)
...++.+.+.+. ++|++++.+.. . ....|++.+++.|.++.
T Consensus 113 ~~~~~~l~~~~~--------~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (269)
T cd01391 113 EAAAEYLAEKGW--------KRVALIYGDDGAYGRERLEGFKAALKKAGIEVV 157 (269)
T ss_pred HHHHHHHHHhCC--------ceEEEEecCCcchhhHHHHHHHHHHHhcCcEEE
Confidence 445566666554 48999987662 1 12336677777775443
No 62
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=85.11 E-value=6 Score=39.02 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.|+.|-++|-.-.+..++.+||.......+ ..++++.-..+- .. ....++.+++ ++.
T Consensus 117 pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~--~~d~~I~ARTDa---~~--------------~~g~deaI~R----a~a 173 (294)
T TIGR02319 117 PKRCGHLEGKRLISTEEMTGKIEAAVEARE--DEDFTIIARTDA---RE--------------SFGLDEAIRR----SRE 173 (294)
T ss_pred ccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCeEEEEEecc---cc--------------cCCHHHHHHH----HHH
Confidence 467777777666788899999988775332 266776554321 00 0111343333 344
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhccCCCCe-eccHHH------HHHHHHHhcCC
Q 017159 162 LEQAGARCIVMPCHISHAWHGDVSEGCSIPF-LHVGEC------VAKELKEAKLK 209 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPv-l~Ivea------t~~~~~~~g~k 209 (376)
..++|||+|.+++-+.-..+..+.+.++.|+ .+|+.. ..+++.+.|++
T Consensus 174 Y~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~ 228 (294)
T TIGR02319 174 YVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYN 228 (294)
T ss_pred HHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCc
Confidence 6679999999998654445778888888886 355542 57788888874
No 63
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=85.04 E-value=38 Score=32.71 Aligned_cols=158 Identities=15% Similarity=0.153 Sum_probs=77.0
Q ss_pred HHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 160 AFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
+.|.+.++|.|++.+... -..++.+.+..++|++-+ ...+++++.+.|. ++
T Consensus 109 ~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~d~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~G~--------~~ 180 (341)
T PRK10703 109 SMLAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAIIDNAFEGGYLAGRYLIERGH--------RD 180 (341)
T ss_pred HHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCCEEEEecccCCcCCCCeEEECcHHHHHHHHHHHHHCCC--------Cc
Confidence 446678899887755321 223555554235565432 2234455555554 48
Q ss_pred EEEeecchhh-----chHHHHHHHHhcCCceee----cCccccccchHHHHHHH-hcC-ChHH----HHHHHHHHHHHHh
Q 017159 219 IGVLATDATL-----SAGFYQEKLQNQGFEVVL----PDKATMEHVIIPTIEAL-NHR-DMEG----ARNLLRIGIQLLL 283 (376)
Q Consensus 219 VGlLaT~~T~-----~s~~Y~~~L~~~G~evv~----p~~~~q~~~l~~~ie~l-k~G-~~~~----a~~~l~~~i~~L~ 283 (376)
|++++..... +..-|.+.++++|+++.. ......+. ....++.+ ..+ .++. .......+++.+.
T Consensus 181 i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~ 259 (341)
T PRK10703 181 IGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQGDFEPES-GYEAMQQILSQKHRPTAVFCGGDIMAMGAICAAD 259 (341)
T ss_pred EEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeEeCCCCHHH-HHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHH
Confidence 9999653221 123377888888876531 11111111 11223232 222 1111 1122234555565
Q ss_pred hCCC----CEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHh
Q 017159 284 VRAV----NAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 284 ~~ga----DaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
+.|. |..|.|+-..+..... .+ .+..| -+...+++.+++.+..
T Consensus 260 ~~g~~ip~dv~vvgfD~~~~~~~~-~p-~lttv~~~~~~~g~~a~~~l~~ 307 (341)
T PRK10703 260 EMGLRVPQDISVIGYDNVRNARYF-TP-ALTTIHQPKDRLGETAFNMLLD 307 (341)
T ss_pred HcCCCCCCceEEEEECCCcHHhhc-CC-CCceecCCHHHHHHHHHHHHHH
Confidence 5553 7788888777644211 11 12233 2355566767666654
No 64
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=84.89 E-value=15 Score=35.58 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=43.0
Q ss_pred HHHHHHc-CCcEEEEeCCCchhhHHHHhccCCCCeecc-----------------------HHHHHHHHHHhcCCCCcCC
Q 017159 159 RAFLEQA-GARCIVMPCHISHAWHGDVSEGCSIPFLHV-----------------------GECVAKELKEAKLKPLEAG 214 (376)
Q Consensus 159 ~~~L~~~-Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-----------------------veat~~~~~~~g~k~~~~~ 214 (376)
+++|.+. ++++|+.++.+.....-++-+..++|+|.. ++..++.+.+.|.
T Consensus 59 ~~~li~~~~V~~iig~~~s~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~------ 132 (341)
T cd06341 59 ARDLVEDDKVVAVVGGSSGAGGSALPYLAGAGIPVIGGAGTSAWELTSPNSFPFSGGTPASLTTWGDFAKDQGG------ 132 (341)
T ss_pred HHHHHHhcCceEEEecccccchhHHHHHhhcCCceecCCCCCchhhcCCCeEEecCCCcchhHHHHHHHHHcCC------
Confidence 3445555 899998887554433213333445665532 2334455555443
Q ss_pred CCceEEEeecchh-h---chHHHHHHHHhcCCcee
Q 017159 215 SGVRIGVLATDAT-L---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 215 ~~~rVGlLaT~~T-~---~s~~Y~~~L~~~G~evv 245 (376)
+|++++.++.. . ....|++.++++|++++
T Consensus 133 --~~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~ 165 (341)
T cd06341 133 --TRAVALVTALSAAVSAAAALLARSLAAAGVSVA 165 (341)
T ss_pred --cEEEEEEeCCcHHHHHHHHHHHHHHHHcCCccc
Confidence 37887765432 1 12236667777777654
No 65
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=84.77 E-value=9.1 Score=37.52 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=15.7
Q ss_pred HHHHHHHHhhCCCCEEEECCCcc
Q 017159 275 LRIGIQLLLVRAVNAVIIGSDEM 297 (376)
Q Consensus 275 l~~~i~~L~~~gaDaVILGCTEl 297 (376)
+...++++.+.++|+|++++..-
T Consensus 182 ~s~~i~~i~~~~~d~v~~~~~~~ 204 (347)
T cd06336 182 FSPIVTKLLAEKPDVIFLGGPSP 204 (347)
T ss_pred hHHHHHHHHhcCCCEEEEcCCCc
Confidence 45556666667888888877643
No 66
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.73 E-value=32 Score=31.63 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=19.7
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeec
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLH 194 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~ 194 (376)
++.+.+.++|.|++...... ..++.+++ .++|++.
T Consensus 49 ~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~-~~iPvV~ 86 (275)
T cd06317 49 VEDLIAQKVDGIILWPTDGQAYIPGLRKAKQ-AGIPVVI 86 (275)
T ss_pred HHHHHHcCCCEEEEecCCccccHHHHHHHHH-CCCcEEE
Confidence 34466789998877543322 33455543 3566543
No 67
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=84.27 E-value=23 Score=33.99 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=56.9
Q ss_pred HHHHH-HcCCcEEEEeCCCchhh--HHHHhccCCCCeeccH--------------------------HHHHHHHHHhcCC
Q 017159 159 RAFLE-QAGARCIVMPCHISHAW--HGDVSEGCSIPFLHVG--------------------------ECVAKELKEAKLK 209 (376)
Q Consensus 159 ~~~L~-~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~Iv--------------------------eat~~~~~~~g~k 209 (376)
++.|. +.++++|+.++.+.... .+.+ +..++|+|... ...++.+.+.+.
T Consensus 57 ~~~lv~~~~v~~iig~~~s~~~~~~~~~~-~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~- 134 (336)
T cd06360 57 ARKLIEQDKVDVVVGPVHSGEALAMVKVL-REPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGY- 134 (336)
T ss_pred HHHHHHHhCCcEEEccCccHhHHHHHHHH-HhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCC-
Confidence 34453 46899888776553321 2333 33466666531 223444544443
Q ss_pred CCcCCCCceEEEeecchhhc---hHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCC
Q 017159 210 PLEAGSGVRIGVLATDATLS---AGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRA 286 (376)
Q Consensus 210 ~~~~~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~g 286 (376)
++|+++..+.... ...|++.+++.|++++.... + ..+ ..-+...+.++++.+
T Consensus 135 -------~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~----------~---~~~-----~~d~~~~v~~~~~~~ 189 (336)
T cd06360 135 -------KKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELW----------V---PFG-----TSDFASYLAQIPDDV 189 (336)
T ss_pred -------CeEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEe----------c---CCC-----CcchHHHHHHHHhcC
Confidence 4788886543322 12366777777877653110 0 001 112344455566678
Q ss_pred CCEEEECCC
Q 017159 287 VNAVIIGSD 295 (376)
Q Consensus 287 aDaVILGCT 295 (376)
+|+|+++..
T Consensus 190 pd~v~~~~~ 198 (336)
T cd06360 190 PDAVFVFFA 198 (336)
T ss_pred CCEEEEecc
Confidence 888887644
No 68
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=84.19 E-value=40 Score=32.30 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=78.0
Q ss_pred HHHHHcCCcEEEEe-CCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMP-CHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIa-CNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.|++. +......++.+++ .++|++-+ ...+++++.+.|++ +|
T Consensus 109 ~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I 179 (329)
T TIGR01481 109 NTLLSKQVDGIIFMGGTITEKLREEFSR-SPVPVVLAGTVDKENELPSVNIDYKQATKEAVGELIAKGHK--------SI 179 (329)
T ss_pred HHHHhCCCCEEEEeCCCCChHHHHHHHh-cCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------eE
Confidence 44667889988774 3322333455543 35665533 23355667666654 99
Q ss_pred EEeecchh------hchHHHHHHHHhcCCcee----ecCccccccchHHHHHHHhcCChH----HHHHHHHHHHHHHhhC
Q 017159 220 GVLATDAT------LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEALNHRDME----GARNLLRIGIQLLLVR 285 (376)
Q Consensus 220 GlLaT~~T------~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~lk~G~~~----~a~~~l~~~i~~L~~~ 285 (376)
|+++.+.. .+..-|.+.++++|+++. .......+. -...++.+.....+ ........+++.+.+.
T Consensus 180 ~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~p~ai~~~~d~~A~g~~~al~~~ 258 (329)
T TIGR01481 180 AFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYSYDA-GYKAFAELKGSLPTAVFVASDEMAAGILNAAMDA 258 (329)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCChHH-HHHHHHHHhCCCCCEEEEcCcHHHHHHHHHHHHc
Confidence 99964321 112337888888887542 111111110 11112222211111 0112223444555555
Q ss_pred CC----CEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 286 AV----NAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 286 ga----DaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
|. |.-|.|.-+.++.. ...+ .+..|+ +...+++.+++.+...
T Consensus 259 g~~vP~dvsvvgfd~~~~~~-~~~p-~lttv~~~~~~~g~~Av~~L~~~ 305 (329)
T TIGR01481 259 GIKVPEDLEVITSNNTRLTE-MVRP-QLSTIIQPLYDIGAVAMRLLTKY 305 (329)
T ss_pred CCCCCCceEEEeeCCchHHh-hcCC-CCcEEecCHHHHHHHHHHHHHHH
Confidence 53 77788887776532 1122 123333 4566777777766553
No 69
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=84.15 E-value=17 Score=36.35 Aligned_cols=115 Identities=19% Similarity=0.317 Sum_probs=67.3
Q ss_pred HHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeeccH--------------------------HHHHHHHHHhcCCCCcC
Q 017159 161 FLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHVG--------------------------ECVAKELKEAKLKPLEA 213 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iv--------------------------eat~~~~~~~g~k~~~~ 213 (376)
.+.+.|+++|+=++++.... ...+-+.-++|+|+.. .++++.+...+.
T Consensus 73 li~~~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~----- 147 (366)
T COG0683 73 LITQDGVDAVVGPTTSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGG----- 147 (366)
T ss_pred HHhhcCceEEEEeccCcccccchhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcC-----
Confidence 35568999888888776554 4455556677766652 223444444322
Q ss_pred CCCceEEEeecchhhchHH---HHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEE
Q 017159 214 GSGVRIGVLATDATLSAGF---YQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAV 290 (376)
Q Consensus 214 ~~~~rVGlLaT~~T~~s~~---Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaV 290 (376)
.+||+++......-.++ +++.+++.|.+++. ... . ..+.. + +..++.++.+.++|+|
T Consensus 148 --~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~-~~~-----~-------~~~~~----~-~~~~v~~i~~~~~d~v 207 (366)
T COG0683 148 --KKRVAIIGDDYAYGEGLADAFKAALKALGGEVVV-EEV-----Y-------APGDT----D-FSALVAKIKAAGPDAV 207 (366)
T ss_pred --CcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEE-EEe-----e-------CCCCC----C-hHHHHHHHHhcCCCEE
Confidence 14677777766544333 55666666776222 110 0 00111 1 6667777878899999
Q ss_pred EECCCccccc
Q 017159 291 IIGSDEMQGV 300 (376)
Q Consensus 291 ILGCTElpll 300 (376)
++++.+-...
T Consensus 208 ~~~~~~~~~~ 217 (366)
T COG0683 208 LVGGYGPDAA 217 (366)
T ss_pred EECCCCccch
Confidence 9999887643
No 70
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.93 E-value=35 Score=31.38 Aligned_cols=160 Identities=14% Similarity=0.181 Sum_probs=77.4
Q ss_pred HHHHHcCCcEEEE-eCCCc--hhhHHHHhccCCCCeeccH--------------------HHHHHHHHHh--cCCCCcCC
Q 017159 160 AFLEQAGARCIVM-PCHIS--HAWHGDVSEGCSIPFLHVG--------------------ECVAKELKEA--KLKPLEAG 214 (376)
Q Consensus 160 ~~L~~~Gad~IVI-aCNTA--H~~~d~L~~~~~vPvl~Iv--------------------eat~~~~~~~--g~k~~~~~ 214 (376)
+.+.+.++|.+++ ++++. ...++++++ .++|++.+- ..+++.+.+. |.
T Consensus 49 ~~~~~~~vdgiii~~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~------ 121 (267)
T cd06322 49 EDFITKKVDAIVLSPVDSKGIRAAIAKAKK-AGIPVITVDIAAEGVAVVSHVATDNYAGGVLAGELAAKVLNGK------ 121 (267)
T ss_pred HHHHHcCCCEEEEcCCChhhhHHHHHHHHH-CCCCEEEEcccCCCCceEEEEecChHHHHHHHHHHHHHHhCCC------
Confidence 4466779998887 55542 123455543 356665442 1234455554 33
Q ss_pred CCceEEEeecchh----hchHHHHHHHHhc-CCceeecC-ccccccchHHHHHH-Hhc-CChHH----HHHHHHHHHHHH
Q 017159 215 SGVRIGVLATDAT----LSAGFYQEKLQNQ-GFEVVLPD-KATMEHVIIPTIEA-LNH-RDMEG----ARNLLRIGIQLL 282 (376)
Q Consensus 215 ~~~rVGlLaT~~T----~~s~~Y~~~L~~~-G~evv~p~-~~~q~~~l~~~ie~-lk~-G~~~~----a~~~l~~~i~~L 282 (376)
++|++++.+.. .+..-|++.++++ |++..... ....+. ....+.+ +.. .+.+. .......+++.+
T Consensus 122 --~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al 198 (267)
T cd06322 122 --GQVAIIDYPTVQSVVDRVRGFKEALADYPNIKIVAVQPGITRAE-ALTAAQNILQANPDLDGIFAFGDDAALGAVSAI 198 (267)
T ss_pred --ceEEEEecCCCccHHHHHHHHHHHHHhCCCcEEEEecCCCChHH-HHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHH
Confidence 48999965422 1233477888888 88764221 111111 1111222 222 11111 122334455666
Q ss_pred hhCCC-CEEEECCCccccccCCC--CCCCCeee-ehHHHHHHHHHHHHHhc
Q 017159 283 LVRAV-NAVIIGSDEMQGVLPKD--DPLLKKCI-DPMDALARSTVTWARSN 329 (376)
Q Consensus 283 ~~~ga-DaVILGCTElpll~~~~--~~~~vpvI-Dp~~~lA~a~v~~a~~~ 329 (376)
.+.|. |..|.|....+...... +......| -....+++.+++.+...
T Consensus 199 ~~~g~~di~vvg~d~~~~~~~~~~~~~~~ltti~~~~~~~g~~a~~~l~~~ 249 (267)
T cd06322 199 KAAGRDNVKVIGFDGMPEARKAVDGEPPFVAVIRQYPDQMGKKAIDAAADV 249 (267)
T ss_pred HHCCCCCeEEEEecCCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHHHH
Confidence 66665 77777776666442211 11112222 22355666666666543
No 71
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=83.76 E-value=15 Score=35.83 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred HcCCcEEEEeCCCchhh-HHHHhccCCCCeecc--------------------------HHHHHHHHHHhcCCCCcCCCC
Q 017159 164 QAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV--------------------------GECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 164 ~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I--------------------------veat~~~~~~~g~k~~~~~~~ 216 (376)
+.|+++|+=|..+.... ...+.+..++|+|+. ..+.++.++..+.
T Consensus 64 ~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~~~-------- 135 (350)
T cd06366 64 NKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGW-------- 135 (350)
T ss_pred cCCceEEECCCcHHHHHHHHHHhhcCCeeEEeccCCCccccccccCCceEEcccchHhHHHHHHHHHHHCCC--------
Confidence 34788777665443322 444555667776652 1223333443333
Q ss_pred ceEEEeecchhhc---hHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 217 VRIGVLATDATLS---AGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 217 ~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
+||+++..+...- ...+++.+++.|++++.... +..+. ....+...++++.+.++|+||+.
T Consensus 136 ~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~-------------~~~~~---~~~d~~~~l~~i~~~~~dvvi~~ 199 (350)
T cd06366 136 RRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAA-------------FPPSA---NDDDITDALKKLKEKDSRVIVVH 199 (350)
T ss_pred cEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEec-------------cCCCC---ChhHHHHHHHHHhcCCCeEEEEE
Confidence 3788887654321 23456667777777653211 00010 01234555566666678888776
Q ss_pred CCc
Q 017159 294 SDE 296 (376)
Q Consensus 294 CTE 296 (376)
|..
T Consensus 200 ~~~ 202 (350)
T cd06366 200 FSP 202 (350)
T ss_pred CCh
Confidence 653
No 72
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=83.74 E-value=18 Score=34.79 Aligned_cols=112 Identities=9% Similarity=0.028 Sum_probs=58.8
Q ss_pred HHHHHH-cCCcEEEEeCCCchhh-H-HHHhccCCCCeeccH--------------------------HHHHHHHHHhcCC
Q 017159 159 RAFLEQ-AGARCIVMPCHISHAW-H-GDVSEGCSIPFLHVG--------------------------ECVAKELKEAKLK 209 (376)
Q Consensus 159 ~~~L~~-~Gad~IVIaCNTAH~~-~-d~L~~~~~vPvl~Iv--------------------------eat~~~~~~~g~k 209 (376)
++.|.+ .++++|+=+..+.-.. . ..+.+..++|++... ...++.+.+.+.
T Consensus 59 a~~li~~~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~- 137 (312)
T cd06346 59 ATKLVNVDGVPGIVGAACSGVTIAALTSVAVPNGVVMISPSSTSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGY- 137 (312)
T ss_pred HHHHHhhcCCCEEEccccchhhHhhhhhhhccCCcEEEecCCCCccceecCCCceEEEecCCcHHHHHHHHHHHHHcCC-
Confidence 344543 4898888765443322 3 556666677877532 122233333332
Q ss_pred CCcCCCCceEEEeecchhhch---HHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCC
Q 017159 210 PLEAGSGVRIGVLATDATLSA---GFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRA 286 (376)
Q Consensus 210 ~~~~~~~~rVGlLaT~~T~~s---~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~g 286 (376)
+||+++....-... ..+++.+++.|++++.... + ..+. ..+...+.++++.+
T Consensus 138 -------~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~------~-------~~~~-----~d~~~~v~~l~~~~ 192 (312)
T cd06346 138 -------KSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVA------H-------EEGK-----SSYSSEVAAAAAGG 192 (312)
T ss_pred -------CeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEe------e-------CCCC-----CCHHHHHHHHHhcC
Confidence 37777765443221 2356666666776653110 0 0011 12344556666778
Q ss_pred CCEEEECCCc
Q 017159 287 VNAVIIGSDE 296 (376)
Q Consensus 287 aDaVILGCTE 296 (376)
+|+|++.+..
T Consensus 193 pd~v~~~~~~ 202 (312)
T cd06346 193 PDALVVIGYP 202 (312)
T ss_pred CCEEEEeccc
Confidence 8988888763
No 73
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=83.34 E-value=45 Score=32.14 Aligned_cols=158 Identities=9% Similarity=0.077 Sum_probs=77.1
Q ss_pred HHHHHcCCcEEEEeC-CCchhhHHHHhccCCCCeeccH-------------------HHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPC-HISHAWHGDVSEGCSIPFLHVG-------------------ECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaC-NTAH~~~d~L~~~~~vPvl~Iv-------------------eat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.+.+.++|.|++.. ......++.+++ .++|++.+. ..+++++.+.|++ +|
T Consensus 113 ~~~~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~Gh~--------~I 183 (331)
T PRK14987 113 ESMLSWNIDGLILTERTHTPRTLKMIEV-AGIPVVELMDSQSPCLDIAVGFDNFEAARQMTTAIIARGHR--------HI 183 (331)
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHHHHHh-CCCCEEEEecCCCCCCCceEEeCcHHHHHHHHHHHHHCCCc--------eE
Confidence 446678999988743 222233555533 367766431 2355667776654 99
Q ss_pred EEeecchhh----chHHHHHHHHhcCCce---eecCccccccchHHHHHHH-hcC-ChHH----HHHHHHHHHHHHhhCC
Q 017159 220 GVLATDATL----SAGFYQEKLQNQGFEV---VLPDKATMEHVIIPTIEAL-NHR-DMEG----ARNLLRIGIQLLLVRA 286 (376)
Q Consensus 220 GlLaT~~T~----~s~~Y~~~L~~~G~ev---v~p~~~~q~~~l~~~ie~l-k~G-~~~~----a~~~l~~~i~~L~~~g 286 (376)
|+++.+... +..-|++.++++|+.. +.......+. -...++.+ +.. .++. .......+++.+.+.|
T Consensus 184 ~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~~~g 262 (331)
T PRK14987 184 AYLGARLDERTIIKQKGYEQAMLDAGLVPYSVMVEQSSSYSS-GIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLG 262 (331)
T ss_pred EEEcCCCcccHHHHHHHHHHHHHHcCCCccceeecCCCChhh-HHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHHcC
Confidence 999754321 1223788888888631 1111111110 11122222 211 1110 1122233344455555
Q ss_pred C----CEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 287 V----NAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 287 a----DaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
. |.-|.|+...++.. ...+..-.+-=+.+.+++.+++.+.+
T Consensus 263 ~~vP~disvigfD~~~~~~-~~~p~lttv~~~~~~~g~~A~~~l~~ 307 (331)
T PRK14987 263 LKVPDDMAIAGFHGHDIGQ-VMEPRLASVLTPRERMGSIGAERLLA 307 (331)
T ss_pred CCCCCccEEEeeCCchhhh-ccCCCCceEeCCHHHHHHHHHHHHHH
Confidence 3 77888887765332 11221112223356677777776654
No 74
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=83.14 E-value=47 Score=32.28 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=60.0
Q ss_pred HHHH-HHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc----------------------HHHHHHHHHHhcCCCCcCC
Q 017159 159 RAFL-EQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV----------------------GECVAKELKEAKLKPLEAG 214 (376)
Q Consensus 159 ~~~L-~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I----------------------veat~~~~~~~g~k~~~~~ 214 (376)
+++| ++.|+++|+=+.+++... ...+-+..++|++.. ....++.+.+.+
T Consensus 59 ~~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~------- 131 (334)
T cd06356 59 AQRLALQDKVDVVWGGISSASREAIRPIMDRTKQLYFYTTQYEGGVCDRNTFCTGATPAQQFSTLVPYMMEKY------- 131 (334)
T ss_pred HHHHHHhCCCCEEEeCcchHHHHHHHHHHHhcCceEEeCCCccCCcccCCEEEeCCCcHHHHHHHHHHHHHcc-------
Confidence 3444 456899888777665443 445555667887752 233444554432
Q ss_pred CCceEEEeecchhhc---hHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEE
Q 017159 215 SGVRIGVLATDATLS---AGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVI 291 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVI 291 (376)
.+||+++..+...- ...+++.+++.|.+++.... ...| ...+...+.++...++|+|+
T Consensus 132 -~~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~-------------~~~~-----~~d~~~~v~~l~~~~pd~v~ 192 (334)
T cd06356 132 -GKKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEF-------------IPLD-----VSDFGSTIQKIQAAKPDFVM 192 (334)
T ss_pred -CCeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeee-------------cCCC-----chhHHHHHHHHHhcCCCEEE
Confidence 13788777644221 23466777777777653211 0001 12345555666667778777
Q ss_pred EC
Q 017159 292 IG 293 (376)
Q Consensus 292 LG 293 (376)
++
T Consensus 193 ~~ 194 (334)
T cd06356 193 SI 194 (334)
T ss_pred Ee
Confidence 64
No 75
>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]
Probab=83.01 E-value=2 Score=42.33 Aligned_cols=77 Identities=22% Similarity=0.334 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhc--------cCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSE--------GCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~--------~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVG 220 (376)
+...+......+.+.++|+|+||-+|-+=|.++|+-|. ..++|++|......- ..|.. ...+|
T Consensus 205 ~~sl~~~~~kL~~~ke~gad~ivt~Cp~Chlq~D~~q~~i~~~~g~~~~~pv~~~~Qll~l---a~G~~------pe~~~ 275 (293)
T COG2048 205 SVSLKLAKRKLQSAKEAGADCIVTPCPLCHLQLDRGQPEIKKKFGIDYDIPVLHLSQLLGL---ALGHS------PEEVG 275 (293)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEecCccceeehhhccHHHHHhcCCCCCCceeeHHHHHHH---HhCCC------HHHhc
Confidence 67788888888999999999999999999999876554 347999998776532 34543 23566
Q ss_pred EeecchhhchHHHHH
Q 017159 221 VLATDATLSAGFYQE 235 (376)
Q Consensus 221 lLaT~~T~~s~~Y~~ 235 (376)
+.+..+-..++..+
T Consensus 276 -~~~~~i~~~~~l~k 289 (293)
T COG2048 276 -LDIHAIPTDPVLEK 289 (293)
T ss_pred -ccccccCcHHHHHH
Confidence 33444444444443
No 76
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=82.70 E-value=38 Score=30.93 Aligned_cols=160 Identities=12% Similarity=0.098 Sum_probs=75.7
Q ss_pred HHHHHHcCCcEEEEe-CCCc-hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCc
Q 017159 159 RAFLEQAGARCIVMP-CHIS-HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 159 ~~~L~~~Gad~IVIa-CNTA-H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~ 217 (376)
++.+.+.++|.+++. |+.. ...++++.+ .++|++-+ ...+++.+.+.|. +
T Consensus 48 i~~~~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~ 118 (268)
T cd06289 48 LSTMLEHGVAGIILCPAAGTSPDLLKRLAE-SGIPVVLVAREVAGAPFDYVGPDNAAGARLATEHLISLGH--------R 118 (268)
T ss_pred HHHHHHcCCCEEEEeCCCCccHHHHHHHHh-cCCCEEEEeccCCCCCCCEEeecchHHHHHHHHHHHHCCC--------C
Confidence 345667899988665 4432 223455543 36666533 2334555555554 4
Q ss_pred eEEEeecchh-----hchHHHHHHHHhcCCce----eecCccccccchHHHHHH-Hhc-CChHH----HHHHHHHHHHHH
Q 017159 218 RIGVLATDAT-----LSAGFYQEKLQNQGFEV----VLPDKATMEHVIIPTIEA-LNH-RDMEG----ARNLLRIGIQLL 282 (376)
Q Consensus 218 rVGlLaT~~T-----~~s~~Y~~~L~~~G~ev----v~p~~~~q~~~l~~~ie~-lk~-G~~~~----a~~~l~~~i~~L 282 (376)
+|++++.+.. .+..-|.+.++++|++. +++.....+. ....++. +.. .+++. .......+++.+
T Consensus 119 ~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al 197 (268)
T cd06289 119 RIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEGPPSRQG-GAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSGL 197 (268)
T ss_pred CEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEecCcchhh-HHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHH
Confidence 8999875322 22334777788887532 2232211111 1111222 222 11111 111222334444
Q ss_pred hhCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 283 LVRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 283 ~~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
.+.| -|..|+|+-..+.......+.. .+--+...+++.+++.+...
T Consensus 198 ~~~g~~~p~di~iig~d~~~~~~~~~~~l~-ti~~~~~~~g~~a~~~l~~~ 247 (268)
T cd06289 198 RRAGLTPGRDIAVVGFDDVAEAALATPALT-TVSTDPREIGRRAAELLLRR 247 (268)
T ss_pred HHcCCCCCcceEEEeecCchHHHhcCCCce-eeeCCHHHHHHHHHHHHHHH
Confidence 4443 3778888877764322211111 12234555666666666544
No 77
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=82.26 E-value=19 Score=34.51 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=22.8
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc
Q 017159 160 AFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV 195 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I 195 (376)
+.|...|+.+|+=|..+.... ...+.+..++|+|+.
T Consensus 56 ~~li~~~V~aiiG~~~S~~~~av~~i~~~~~ip~is~ 92 (324)
T cd06368 56 CDLLSQGVAAIFGPSSSSSANTVQSICDALEIPHITT 92 (324)
T ss_pred HHHHhcCcEEEECCCCHHHHHHHHHHHhccCCCcEEe
Confidence 344446888877766654433 556666778887764
No 78
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=82.06 E-value=12 Score=34.89 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCee---ccH-HHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 156 RHKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFL---HVG-ECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl---~Iv-eat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
.+.++.+++.|++.+.+....+. .++.++.+.+++|+. +|- .+-++.+...|.. +| +++
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~--------~v-vlg 101 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVD--------RV-IIG 101 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCC--------EE-EEC
Confidence 34456678999998877766554 236777777788865 222 2445566666653 44 677
Q ss_pred cchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 224 TDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
|..--....+.+..++.|.+.+++.-+.....+. + .|..+.......+.++.+.+.|++.+++.
T Consensus 102 s~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~--~----~g~~~~~~~~~~~~~~~~~~~g~~~ii~~ 165 (230)
T TIGR00007 102 TAAVENPDLVKELLKEYGPERIVVSLDARGGEVA--V----KGWLEKSEVSLEELAKRLEELGLEGIIYT 165 (230)
T ss_pred hHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEE--E----cCCcccCCCCHHHHHHHHHhCCCCEEEEE
Confidence 7554445678888888886655554433321110 1 11111111122345566777899988764
No 79
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=82.06 E-value=25 Score=33.56 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=44.2
Q ss_pred HHHH-HcCCcEEEEeCCCchh--hHHHHhccCCCCeeccH------------------------HHHHHHHHHhcCCCCc
Q 017159 160 AFLE-QAGARCIVMPCHISHA--WHGDVSEGCSIPFLHVG------------------------ECVAKELKEAKLKPLE 212 (376)
Q Consensus 160 ~~L~-~~Gad~IVIaCNTAH~--~~d~L~~~~~vPvl~Iv------------------------eat~~~~~~~g~k~~~ 212 (376)
+.|. +.++++|+.+..+... ..+.+ +..++|++.+. ...++.+.+.|.
T Consensus 59 ~~li~~~~v~~vig~~~s~~~~~~~~~~-~~~~vP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---- 133 (312)
T cd06333 59 RKLIEEDKVDAIIGPSTTPATMAVAPVA-EEAKTPMISLAPAAAIVEPKRKWVFKTPQNDRLMAEAILADMKKRGV---- 133 (312)
T ss_pred HHHHhhCCeEEEECCCCCHHHHHHHHHH-HhcCCCEEEccCCccccCCCCCcEEEcCCCcHHHHHHHHHHHHHcCC----
Confidence 4444 4589999887655432 23433 33467766532 122344555554
Q ss_pred CCCCceEEEeecchhh---chHHHHHHHHhcCCcee
Q 017159 213 AGSGVRIGVLATDATL---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 213 ~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv 245 (376)
+||+++..+... ...-|++.+++.|+++.
T Consensus 134 ----~~vail~~~~~~~~~~~~~~~~~~~~~G~~v~ 165 (312)
T cd06333 134 ----KTVAFIGFSDAYGESGLKELKALAPKYGIEVV 165 (312)
T ss_pred ----CEEEEEecCcHHHHHHHHHHHHHHHHcCCEEE
Confidence 499999765432 22336677788888764
No 80
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=81.24 E-value=9 Score=37.74 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=65.6
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.|+.|-.+|-.-.+..++.+||........ ..++++.-..+- .. ....++.+++ ++.
T Consensus 118 pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa---~~--------------~~g~deAI~R----a~a 174 (292)
T PRK11320 118 AKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPDFVIMARTDA---LA--------------VEGLDAAIER----AQA 174 (292)
T ss_pred ccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCCeEEEEecCc---cc--------------ccCHHHHHHH----HHH
Confidence 356677666666677888888887765322 366766554321 00 1112443333 345
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhccCCCCee-ccHH------HHHHHHHHhcCC
Q 017159 162 LEQAGARCIVMPCHISHAWHGDVSEGCSIPFL-HVGE------CVAKELKEAKLK 209 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl-~Ive------at~~~~~~~g~k 209 (376)
..++|||+|.+++-+.--.+.++.+.+++|++ ++++ ...+++.+.|++
T Consensus 175 Y~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~ 229 (292)
T PRK11320 175 YVEAGADMIFPEAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVA 229 (292)
T ss_pred HHHcCCCEEEecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence 66799999999997754447777778888874 4442 247778888874
No 81
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=80.83 E-value=33 Score=32.77 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=21.0
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc
Q 017159 159 RAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV 195 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I 195 (376)
++.|.+.+|++|+=+-++.... .-.+-+..++|+|+.
T Consensus 59 ~~~li~~~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~ 96 (334)
T cd06342 59 AQKLVDDGVVGVVGHLNSGVTIPASPIYADAGIVMISP 96 (334)
T ss_pred HHHHHhCCceEEECCCccHhHHHhHHHHHhCCCeEEec
Confidence 3444444898877654443332 334445567888874
No 82
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=80.65 E-value=46 Score=30.52 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=44.8
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|.+.++|.|++........ .+.+.+..++|++-+ ...+++.+.+.|. ++
T Consensus 48 i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~i~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~G~--------~~ 119 (269)
T cd06275 48 LRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDWGPEDDFADKIQDNSEEGGYLATRHLIELGH--------RR 119 (269)
T ss_pred HHHHHHcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEecccCCCCCCeEeeCcHHHHHHHHHHHHHCCC--------ce
Confidence 3457778999888755432332 344433345665543 1233455666554 48
Q ss_pred EEEeecchhh-----chHHHHHHHHhcCCce
Q 017159 219 IGVLATDATL-----SAGFYQEKLQNQGFEV 244 (376)
Q Consensus 219 VGlLaT~~T~-----~s~~Y~~~L~~~G~ev 244 (376)
|++++..... +..-|.+.++++|+++
T Consensus 120 i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~ 150 (269)
T cd06275 120 IGCITGPLEKAPAQQRLAGFRRAMAEAGLPV 150 (269)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 9999753321 1223677888888765
No 83
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=80.50 E-value=29 Score=36.96 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=56.8
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHH---HHHHHHhcCCCCcCCCCceEEEeecchhhch-HHHHH
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECV---AKELKEAKLKPLEAGSGVRIGVLATDATLSA-GFYQE 235 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat---~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s-~~Y~~ 235 (376)
+.+.+.|+|+|+=.-.|+. .|++.+++||+.|--.. .+.++... ...++|||+|-+.+... ..+.+
T Consensus 48 ~~~~~~~~dviIsrG~ta~----~i~~~~~iPVv~i~~s~~Dil~al~~a~------~~~~~ia~vg~~~~~~~~~~~~~ 117 (526)
T TIGR02329 48 QRLGAERCDVVVAGGSNGA----YLKSRLSLPVIVIKPTGFDVMQALARAR------RIASSIGVVTHQDTPPALRRFQA 117 (526)
T ss_pred HHHHhCCCcEEEECchHHH----HHHHhCCCCEEEecCChhhHHHHHHHHH------hcCCcEEEEecCcccHHHHHHHH
Confidence 4466779999998888864 45677899998873222 22222211 01248999998766442 22333
Q ss_pred HHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 236 KLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 236 ~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.| ++++..-. + - ..+.....++.+.++|+++||=
T Consensus 118 ll---~~~i~~~~-------~---------~----~~~e~~~~~~~l~~~G~~~viG 151 (526)
T TIGR02329 118 AF---NLDIVQRS-------Y---------V----TEEDARSCVNDLRARGIGAVVG 151 (526)
T ss_pred Hh---CCceEEEE-------e---------c----CHHHHHHHHHHHHHCCCCEEEC
Confidence 33 44432211 0 0 1122344556778899987773
No 84
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=80.41 E-value=56 Score=31.27 Aligned_cols=123 Identities=11% Similarity=0.004 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecch----hhc--hHHHHHHHHhcCCceeecCcc-ccccchHHHHHHHhcCCh
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDA----TLS--AGFYQEKLQNQGFEVVLPDKA-TMEHVIIPTIEALNHRDM 268 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~----T~~--s~~Y~~~L~~~G~evv~p~~~-~q~~~l~~~ie~lk~G~~ 268 (376)
+..+++++.+.|++ |||+++.+. +.. ..-|.+.++++|++....... ..+. ....++.+.....
T Consensus 160 ~~~a~~~L~~~Ghr--------~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi~~~~~~~~~~~~~-~~~~~~~~l~~~~ 230 (311)
T TIGR02405 160 IELLMANLYQQGHR--------HISFLGVDPSDKTTGLMRHNAYLAYCESANLEPIYQTGQLSHES-GYVLTDKVLKPET 230 (311)
T ss_pred HHHHHHHHHHcCCC--------cEEEEccCcccchhHHHHHHHHHHHHHHcCCCceeeeCCCCHHH-HHHHHHHHHhcCC
Confidence 44567788888775 999997432 112 222889999999874321111 1111 1112222211111
Q ss_pred H----HHHHHHHHHHHHHhhCC-CCEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHhc
Q 017159 269 E----GARNLLRIGIQLLLVRA-VNAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARSN 329 (376)
Q Consensus 269 ~----~a~~~l~~~i~~L~~~g-aDaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~~ 329 (376)
+ ........+++.+.+.| -|.-|.|+...++..- ..+ .+..| -+.+.+++.+++.+...
T Consensus 231 tAi~~~~D~~A~g~~~~l~~~g~~dvsvvgfd~~~~~~~-~~p-~lttv~~~~~~~g~~A~~~L~~~ 295 (311)
T TIGR02405 231 TALVCATDTLALGAAKYLQELDRSDVQVSSVGNTPLLSF-LFP-NTVSIDPGYYEAGKAAASQLIKQ 295 (311)
T ss_pred CEEEECCcHHHHHHHHHHHHcCCCCeEEEeeCCchhhcc-cCC-CCceEecCHHHHHHHHHHHHHHH
Confidence 1 01122233344455555 3677888887764421 122 23333 34677778777777553
No 85
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=80.20 E-value=48 Score=30.37 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=44.5
Q ss_pred HHHHHcCCcEEEEe-CCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMP-CHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIa-CNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.+.+.++|.+++. ++.....++.+++ .++|++-+ ...+++.+.+.|. ++|
T Consensus 49 ~~l~~~~vdgiii~~~~~~~~~~~~l~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~~i 119 (268)
T cd06298 49 NNLLAKQVDGIIFMGGKISEEHREEFKR-SPTPVVLAGSVDEDNELPSVNIDYKKAAFEATELLIKNGH--------KKI 119 (268)
T ss_pred HHHHHhcCCEEEEeCCCCcHHHHHHHhc-CCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHcCC--------ceE
Confidence 34556899998875 5444455666644 25555433 2334555655544 489
Q ss_pred EEeecchh----hc--hHHHHHHHHhcCCce
Q 017159 220 GVLATDAT----LS--AGFYQEKLQNQGFEV 244 (376)
Q Consensus 220 GlLaT~~T----~~--s~~Y~~~L~~~G~ev 244 (376)
++++.... .. ..-|.+.++++|+++
T Consensus 120 ~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~ 150 (268)
T cd06298 120 AFISGPLEDSINGDERLAGYKEALSEANIEF 150 (268)
T ss_pred EEEeCCcccccchhHHHHHHHHHHHHcCCCC
Confidence 99975332 11 123778888888653
No 86
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=80.19 E-value=13 Score=35.72 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=57.8
Q ss_pred HHHHHHH-cCCcEEEEeCCCchhh-HHHHhccCCCCeecc----------------------HHHHHHHHHHhcCCCCcC
Q 017159 158 KRAFLEQ-AGARCIVMPCHISHAW-HGDVSEGCSIPFLHV----------------------GECVAKELKEAKLKPLEA 213 (376)
Q Consensus 158 ~~~~L~~-~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I----------------------veat~~~~~~~g~k~~~~ 213 (376)
.++.|.+ .++++|+-++.+.... .-.+-+..++|+++. ....++.++..
T Consensus 60 ~~~~l~~~~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~------- 132 (343)
T PF13458_consen 60 AARKLIDDDGVDAVVGPLSSAQAEAVAPIAEEAGIPYISPSASSPSPDSPNVFRLSPSDSQQAAALAEYLAKK------- 132 (343)
T ss_dssp HHHHHHHTSTESEEEESSSHHHHHHHHHHHHHHT-EEEESSGGGGTTTHTTEEESS--HHHHHHHHHHHHHHT-------
T ss_pred HHHHhhhhcCcEEEEecCCcHHHHHHHHHHHhcCcEEEEeeccCCCCCCCcEEEEeccccHHHHHHHHHHHHH-------
Confidence 3444544 7888887777654332 222223345665553 22234444331
Q ss_pred CCCceEEEeecchhhc---hHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEE
Q 017159 214 GSGVRIGVLATDATLS---AGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAV 290 (376)
Q Consensus 214 ~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaV 290 (376)
.+.++|++++...... ...+++.+++.|++++-... + ..+. ..+...++.+.+.++|+|
T Consensus 133 ~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~------~-------~~~~-----~d~~~~~~~l~~~~~d~v 194 (343)
T PF13458_consen 133 LGAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIR------Y-------PPGD-----TDFSALVQQLKSAGPDVV 194 (343)
T ss_dssp TTTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEE------E--------TTS-----SHHHHHHHHHHHTTTSEE
T ss_pred cCCcEEEEEecCchhhhHHHHHHHHHHhhcCceecccee------c-------cccc-----ccchHHHHHHhhcCCCEE
Confidence 1235899998654222 22357777888888642210 0 0011 123344555666778887
Q ss_pred EECCCcc
Q 017159 291 IIGSDEM 297 (376)
Q Consensus 291 ILGCTEl 297 (376)
++.++.-
T Consensus 195 ~~~~~~~ 201 (343)
T PF13458_consen 195 VLAGDPA 201 (343)
T ss_dssp EEESTHH
T ss_pred EEeccch
Confidence 6665443
No 87
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=79.82 E-value=24 Score=34.11 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=17.0
Q ss_pred HHHHHHHHhhCCCCEEEECCCcc
Q 017159 275 LRIGIQLLLVRAVNAVIIGSDEM 297 (376)
Q Consensus 275 l~~~i~~L~~~gaDaVILGCTEl 297 (376)
+...++++.+.++|+||+.+..-
T Consensus 185 ~~~~v~~l~~~~~d~i~~~~~~~ 207 (345)
T cd06338 185 LSPLISKAKAAGPDAVVVAGHFP 207 (345)
T ss_pred hHHHHHHHHhcCCCEEEECCcch
Confidence 45556667778899999988753
No 88
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=79.73 E-value=49 Score=30.22 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=75.2
Q ss_pred HHHcCCcEEEEe-CCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 162 LEQAGARCIVMP-CHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 162 L~~~Gad~IVIa-CNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
+.+.++|.|++. ++.....+..+.+ .++|++-+ ...+++++.+.|. ++|++
T Consensus 55 ~~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~g~--------~~i~~ 125 (268)
T cd06271 55 VESGLVDGVIISRTRPDDPRVALLLE-RGFPFVTHGRTELGDPHPWVDFDNEAAAYQAVRRLIALGH--------RRIAL 125 (268)
T ss_pred HHcCCCCEEEEecCCCCChHHHHHHh-cCCCEEEECCcCCCCCCCeEeeCcHHHHHHHHHHHHHcCC--------CcEEE
Confidence 345679988874 4333333444433 34554332 2335566666654 38999
Q ss_pred eecchhh-----chHHHHHHHHhcCCce----eecCccccccchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHhhCC
Q 017159 222 LATDATL-----SAGFYQEKLQNQGFEV----VLPDKATMEHVIIPTIEA-LNHRD-MEG----ARNLLRIGIQLLLVRA 286 (376)
Q Consensus 222 LaT~~T~-----~s~~Y~~~L~~~G~ev----v~p~~~~q~~~l~~~ie~-lk~G~-~~~----a~~~l~~~i~~L~~~g 286 (376)
++..... +..-|++.++++|++. +.......+. ....++. ++.+. .+. .......+++.+.+.|
T Consensus 126 i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g 204 (268)
T cd06271 126 LNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGDMTEEG-GYAAAAELLALPDRPTAIVCSSELMALGVLAALAEAG 204 (268)
T ss_pred ecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCCCChHH-HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 9754321 1223678888888753 1221111111 1122222 22221 110 1122233445555544
Q ss_pred ----CCEEEECCCccccccCCCCCCCCeeeeh-HHHHHHHHHHHHHh
Q 017159 287 ----VNAVIIGSDEMQGVLPKDDPLLKKCIDP-MDALARSTVTWARS 328 (376)
Q Consensus 287 ----aDaVILGCTElpll~~~~~~~~vpvIDp-~~~lA~a~v~~a~~ 328 (376)
-|.-|.|+...+...-. .+ .+..|+. ...+++.+++.+..
T Consensus 205 ~~vp~~i~iig~d~~~~~~~~-~~-~ltti~~~~~~~g~~a~~~l~~ 249 (268)
T cd06271 205 LRPGRDVSVVGFDDSPPLLFF-SP-PLTTVRSDLRAAGRRLAELLLA 249 (268)
T ss_pred CCCCcceeEEEecCchHHhhc-CC-CceEEccCHHHHHHHHHHHHHH
Confidence 36778888887765411 11 2344543 34566666666654
No 89
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.36 E-value=52 Score=30.27 Aligned_cols=159 Identities=15% Similarity=0.197 Sum_probs=81.7
Q ss_pred HHHHHHcCCcEEEEe-CCCchhhHHHHhccCCCCeecc-----------------HHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 159 RAFLEQAGARCIVMP-CHISHAWHGDVSEGCSIPFLHV-----------------GECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 159 ~~~L~~~Gad~IVIa-CNTAH~~~d~L~~~~~vPvl~I-----------------veat~~~~~~~g~k~~~~~~~~rVG 220 (376)
++.+.+.++|.|++. |......++++++ .++|++-+ ...+++.+.+.|.+ +|+
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~iPvv~~~~~~~~~~~V~~d~~~ag~~a~~~L~~~g~~--------~i~ 118 (265)
T cd06285 48 IEMLLDRRVDGLILGDARSDDHFLDELTR-RGVPFVLVLRHAGTSPAVTGDDVLGGRLATRHLLDLGHR--------RIA 118 (265)
T ss_pred HHHHHHcCCCEEEEecCCCChHHHHHHHH-cCCCEEEEccCCCCCCEEEeCcHHHHHHHHHHHHHCCCc--------cEE
Confidence 355777899988764 4434444566544 35665532 23456667776653 899
Q ss_pred Eeecchhh-----chHHHHHHHHhcCCcee----ecCccccccchHHHHHHH-hcCC-hH----HHHHHHHHHHHHHhhC
Q 017159 221 VLATDATL-----SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEAL-NHRD-ME----GARNLLRIGIQLLLVR 285 (376)
Q Consensus 221 lLaT~~T~-----~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~l-k~G~-~~----~a~~~l~~~i~~L~~~ 285 (376)
+++.+... +..-|.+.++++|+++. .......+. ....++++ +.+. .+ ........+++.+.+.
T Consensus 119 ~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~ 197 (265)
T cd06285 119 VLAGPDYASTARDRLAGFRAALAEAGIEVPPERIVYSGFDIEG-GEAAAEKLLRSDSPPTAIFAVNDFAAIGVMGAARDR 197 (265)
T ss_pred EEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHH-HHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHc
Confidence 99754321 12227778888887542 111111111 11122332 2221 11 1112223444555555
Q ss_pred CC----CEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 286 AV----NAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 286 ga----DaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
|. |.-|.|+-..+.... . .+.+..|+ +...+++.+++.+.+.
T Consensus 198 g~~~p~di~iig~d~~~~~~~-~-~p~~t~i~~~~~~~g~~a~~~l~~~ 244 (265)
T cd06285 198 GLRVPDDVALVGYNDIPLVAR-L-PVPLTTVRSPFHQIGRTALRLLLET 244 (265)
T ss_pred CCCCCcceEEEeecCcHHHhc-C-CCCceeEeCCHHHHHHHHHHHHHHH
Confidence 53 677888888775432 1 12234444 4456777777766553
No 90
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=79.09 E-value=24 Score=34.66 Aligned_cols=135 Identities=10% Similarity=0.099 Sum_probs=69.9
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
+.++||++= |.....|+..+.+... ........+++.+... ..+. +... +.+
T Consensus 45 ~t~~Igvv~---p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~------------------~~~~--~~q~----~~i 97 (343)
T PRK10936 45 KAWKLCALY---PHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGG------------------YYNL--AKQQ----QQL 97 (343)
T ss_pred CCeEEEEEe---cCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCC------------------CCCH--HHHH----HHH
Confidence 357889774 2334567887777664 2222334454433110 0011 2222 334
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHH-hccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDV-SEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L-~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
+.+.+.++|.|++.+.....+.+.+ ....++|++.+ ...+++++.+.+.+ .+..++
T Consensus 98 ~~l~~~~vdgIIl~~~~~~~~~~~l~~~~~giPvV~~~~~~~~~~~~~~V~~D~~~~g~~aa~~L~~~~~~---~~g~~~ 174 (343)
T PRK10936 98 EQCVAWGADAILLGAVTPDGLNPDLELQAANIPVIALVNGIDSPQVTTRVGVSWYQMGYQAGRYLAQWHPK---GSKPLN 174 (343)
T ss_pred HHHHHhCCCEEEEeCCChHHhHHHHHHHHCCCCEEEecCCCCCccceEEEecChHHHHHHHHHHHHHHHHh---cCCCce
Confidence 5577789999999876555433333 12346787633 12334555554310 012358
Q ss_pred EEEeec-chh----hchHHHHHHHHhcCCcee
Q 017159 219 IGVLAT-DAT----LSAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 219 VGlLaT-~~T----~~s~~Y~~~L~~~G~evv 245 (376)
|+++.. ... .+..-|++.+++.|+++.
T Consensus 175 i~~i~g~~~~~~~~~R~~Gf~~~l~~~~i~~~ 206 (343)
T PRK10936 175 VALLPGPEGAGGSKAVEQGFRAAIAGSDVRIV 206 (343)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHhcCCCEEE
Confidence 998853 322 122337777877787654
No 91
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=79.03 E-value=4 Score=39.05 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
+.+.++.++++|||+|+++|- ......++.+.+++|++.+.
T Consensus 158 ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~~~~P~~~~g 198 (240)
T cd06556 158 LIADALAYAPAGADLIVMECV-PVELAKQITEALAIPLAGIG 198 (240)
T ss_pred HHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhCCCCEEEEe
Confidence 444567789999999999998 45558888889999998864
No 92
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.60 E-value=58 Score=30.47 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=43.4
Q ss_pred HHHHHcCCcEEEE-eCCCchhhHHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 160 AFLEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 160 ~~L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rVG 220 (376)
+.+.+.++|.|++ ++......++.+++ .++|++-+ ...+++.+.+.|.+ +|+
T Consensus 50 ~~~~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~v~~d~~~~g~~~~~~L~~~g~~--------~i~ 120 (283)
T cd06279 50 ALVVSALVDGFIVYGVPRDDPLVAALLR-RGLPVVVVDQPLPPGVPSVGIDDRAAAREAARHLLDLGHR--------RIG 120 (283)
T ss_pred HHHHhcCCCEEEEeCCCCChHHHHHHHH-cCCCEEEEecCCCCCCCEEeeCcHHHHHHHHHHHHHcCCC--------cEE
Confidence 3456788997766 44333344555543 35555422 33445666666653 899
Q ss_pred Eeecchh----------------------hchHHHHHHHHhcCCc
Q 017159 221 VLATDAT----------------------LSAGFYQEKLQNQGFE 243 (376)
Q Consensus 221 lLaT~~T----------------------~~s~~Y~~~L~~~G~e 243 (376)
+++.+.+ .+..-|.+.++++|++
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~ 165 (283)
T cd06279 121 ILGLRLGRDRNTGRVTDERLASATFSVARERLEGYLEALEEAGID 165 (283)
T ss_pred EecCcccccccccccccccccccccccHHHHHHHHHHHHHHcCCC
Confidence 9976421 2223377888888854
No 93
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=78.56 E-value=27 Score=34.64 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh-hHHHHhccCCCCeecc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA-WHGDVSEGCSIPFLHV 195 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~I 195 (376)
....++.+ +.|+.+|+=|..+... ....+.+..+||+|..
T Consensus 52 ~~~~c~ll-~~~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~ 92 (382)
T cd06380 52 TNAICSQL-SRGVFAIFGSYDKSSVNTLTSYSDALHVPFITP 92 (382)
T ss_pred HHHHHHHH-hcCcEEEEecCcHHHHHHHHHHHhcCCCCeEec
Confidence 33444545 4588887766543322 2555666778887753
No 94
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.27 E-value=56 Score=30.12 Aligned_cols=157 Identities=10% Similarity=0.162 Sum_probs=74.0
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
.|.+.++|.|++.-+ ....++.+++ .++|++.+ ...+++.+.+.|.+ +|++
T Consensus 45 ~l~~~~vdGiI~~~~-~~~~~~~l~~-~~~PvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~--------~i~~ 114 (265)
T cd01543 45 WLKDWQGDGIIARID-DPEMAEALQK-LGIPVVDVSGSREKPGIPRVTTDNAAIGRMAAEHFLERGFR--------HFAF 114 (265)
T ss_pred hccccccceEEEECC-CHHHHHHHhh-CCCCEEEEeCccCCCCCCEEeeCHHHHHHHHHHHHHHCCCc--------EEEE
Confidence 355567887766422 1223444443 34554333 23345666666654 8999
Q ss_pred eecchhh----chHHHHHHHHhcCCceee-cCc--ccc-c-cchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHhhCC
Q 017159 222 LATDATL----SAGFYQEKLQNQGFEVVL-PDK--ATM-E-HVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLLLVRA 286 (376)
Q Consensus 222 LaT~~T~----~s~~Y~~~L~~~G~evv~-p~~--~~q-~-~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L~~~g 286 (376)
++.+... +..-|++.++++|+.+.. +.. ... . +.-...++. ++.+ +.+. .......+++.+.+.|
T Consensus 115 i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g 194 (265)
T cd01543 115 YGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKPVGIFACTDARARQLLEACRRAG 194 (265)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcCCCCcEEEecChHHHHHHHHHHHHhC
Confidence 8865431 112377888888887521 110 000 0 001111222 3322 2110 1122333444454445
Q ss_pred C----CEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 287 V----NAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 287 a----DaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
. |..|+|+-..+....-..+ .+..|+ +...+++.+++.+..
T Consensus 195 ~~vp~di~vigfd~~~~~~~~~~~-~ltti~~~~~~~g~~a~~~l~~ 240 (265)
T cd01543 195 IAVPEEVAVLGVDNDELICELSRP-PLSSVEQNAERIGYEAAKLLDR 240 (265)
T ss_pred CCCCCceEEEeeCCchhhhccCCC-CCceeecCHHHHHHHHHHHHHH
Confidence 4 8888998887753322222 122333 234566666666543
No 95
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=78.02 E-value=20 Score=34.63 Aligned_cols=24 Identities=0% Similarity=0.055 Sum_probs=17.4
Q ss_pred HHHHHHHHhhCCCCEEEECCCccc
Q 017159 275 LRIGIQLLLVRAVNAVIIGSDEMQ 298 (376)
Q Consensus 275 l~~~i~~L~~~gaDaVILGCTElp 298 (376)
+...+..+.+.++|+|+++.+.-.
T Consensus 179 ~~~~v~~l~~~~~d~v~~~~~~~~ 202 (334)
T cd06327 179 FSSYLLQAQASGADVLVLANAGAD 202 (334)
T ss_pred HHHHHHHHHhCCCCEEEEeccchh
Confidence 455566677788999999887543
No 96
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=77.87 E-value=56 Score=29.83 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred HHHHHcCCcEEEEe-CCCc--hhhHHHHhccCCCCeecc--------------------HHHHHHHHHHh--cCCCCcCC
Q 017159 160 AFLEQAGARCIVMP-CHIS--HAWHGDVSEGCSIPFLHV--------------------GECVAKELKEA--KLKPLEAG 214 (376)
Q Consensus 160 ~~L~~~Gad~IVIa-CNTA--H~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~--g~k~~~~~ 214 (376)
+.+.+.++|.+++. .++. -..+.++++ .++|++.+ ...+++++.+. |.
T Consensus 49 ~~~~~~~~dgii~~~~~~~~~~~~l~~l~~-~~ipvv~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~~~g~------ 121 (268)
T cd06323 49 EDLITRGVDAIIINPTDSDAVVPAVKAANE-AGIPVFTIDREANGGEVVSQIASDNVAGGKMAAEYLVKLLGGK------ 121 (268)
T ss_pred HHHHHcCCCEEEEcCCChHHHHHHHHHHHH-CCCcEEEEccCCCCCceEEEEccCcHHHHHHHHHHHHHHhCCC------
Confidence 44556789987764 2221 123444433 35555432 23355666665 33
Q ss_pred CCceEEEeecchh-----hchHHHHHHHHhc-CCceee-cC-ccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHH
Q 017159 215 SGVRIGVLATDAT-----LSAGFYQEKLQNQ-GFEVVL-PD-KATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQ 280 (376)
Q Consensus 215 ~~~rVGlLaT~~T-----~~s~~Y~~~L~~~-G~evv~-p~-~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~ 280 (376)
++|++++.+.. .+..-|++.++++ |+++.. +. ....+. ....+.. ++.+ +.+. .......+++
T Consensus 122 --~~i~~l~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~ 198 (268)
T cd06323 122 --GKVVELQGIPGASAARERGKGFHEVVDKYPGLKVVASQPADFDRAK-GLNVMENILQAHPDIKGVFAQNDEMALGAIE 198 (268)
T ss_pred --ceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEecccCCCCHHH-HHHHHHHHHHHCCCcCEEEEcCCchHHHHHH
Confidence 48999965322 1123377788885 777652 11 111111 1111222 2221 1110 1122233455
Q ss_pred HHhhCCC-CEEEECCCccccccCCC-CCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 281 LLLVRAV-NAVIIGSDEMQGVLPKD-DPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 281 ~L~~~ga-DaVILGCTElpll~~~~-~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
.+.+.|. |.-|+|.-..+...... .+.....|+ +...+++.+++.+...
T Consensus 199 ~l~~~g~~di~iig~d~~~~~~~~~~~~~~ltti~~~~~~~g~~a~~~l~~~ 250 (268)
T cd06323 199 ALKAAGKDDVKVVGFDGTPDALKAIKAGKMAATVAQQPALMGRLAVETADKY 250 (268)
T ss_pred HHHHcCCCCcEEEEeCCCHHHHHHHHcCCeeEEEecChHHHHHHHHHHHHHH
Confidence 5666776 88888876665432211 111123444 4566677777666553
No 97
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=77.36 E-value=28 Score=37.27 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=58.0
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHH---HHHHHHhcCCCCcCCCCceEEEeecchhhch-HHHHH
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECV---AKELKEAKLKPLEAGSGVRIGVLATDATLSA-GFYQE 235 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat---~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s-~~Y~~ 235 (376)
+.++..|+|+|+=.-.|+. .|++.+++||+.|--.. .+.++... ....||||++=+.+... ..+.+
T Consensus 58 ~~~~~~~~dviIsrG~ta~----~i~~~~~iPVv~i~~s~~Dil~al~~a~------~~~~~iavv~~~~~~~~~~~~~~ 127 (538)
T PRK15424 58 KRLATERCDAIIAAGSNGA----YLKSRLSVPVILIKPSGFDVMQALARAR------KLTSSIGVVTYQETIPALVAFQK 127 (538)
T ss_pred HHHhhCCCcEEEECchHHH----HHHhhCCCCEEEecCCHhHHHHHHHHHH------hcCCcEEEEecCcccHHHHHHHH
Confidence 5577789999998888864 45667899998873222 22222211 01248999998776532 22344
Q ss_pred HHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 236 KLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 236 ~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
.| ++++..-. + - ..+.....++.++++|+++||=+
T Consensus 128 ~l---~~~i~~~~-------~---------~----~~~e~~~~v~~lk~~G~~~vvG~ 162 (538)
T PRK15424 128 TF---NLRIEQRS-------Y---------V----TEEDARGQINELKANGIEAVVGA 162 (538)
T ss_pred Hh---CCceEEEE-------e---------c----CHHHHHHHHHHHHHCCCCEEEcC
Confidence 33 44432211 0 0 11223445567888999988744
No 98
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=77.24 E-value=16 Score=32.73 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=51.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 83 NTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 83 k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
+.+||| ||..|-.+++++-.+...+-+-++ .+-+.|... .+ +.+.++ ++..
T Consensus 3 ~~V~II--MGS~SD~~~mk~Aa~~L~~fgi~y-e~~VvSAHR--------------------TP--e~m~~y----a~~a 53 (162)
T COG0041 3 PKVGII--MGSKSDWDTMKKAAEILEEFGVPY-EVRVVSAHR--------------------TP--EKMFEY----AEEA 53 (162)
T ss_pred ceEEEE--ecCcchHHHHHHHHHHHHHcCCCe-EEEEEeccC--------------------CH--HHHHHH----HHHH
Confidence 479999 999999999998888776643322 111222211 22 334333 4557
Q ss_pred HHcCCcEEE-EeCCCchhhHHHHhccCCCCeeccH
Q 017159 163 EQAGARCIV-MPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 163 ~~~Gad~IV-IaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
++.|.++|+ .+--.||. --.+...+.+|||++-
T Consensus 54 ~~~g~~viIAgAGgAAHL-PGmvAa~T~lPViGVP 87 (162)
T COG0041 54 EERGVKVIIAGAGGAAHL-PGMVAAKTPLPVIGVP 87 (162)
T ss_pred HHCCCeEEEecCcchhhc-chhhhhcCCCCeEecc
Confidence 789998664 44444453 4456667789999863
No 99
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=76.84 E-value=22 Score=34.46 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHHHHHHHhhCCCCEEEECCCc
Q 017159 275 LRIGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 275 l~~~i~~L~~~gaDaVILGCTE 296 (376)
+...+.++++.++|+||++|..
T Consensus 181 ~~~~v~~i~~~~~d~vi~~~~~ 202 (344)
T cd06348 181 FQAQITAVLNSKPDLIVISALA 202 (344)
T ss_pred HHHHHHHHHhcCCCEEEECCcc
Confidence 3444555666778888888754
No 100
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=76.26 E-value=62 Score=29.58 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=75.3
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+.+.++|.|++...+ .-..++++++. ++|++-+ ...+++.+.+.|. ++
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~-~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~~ 118 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAEQLEDLLKR-GIPVVFVDREITGSPIPFVTSDPQPGMTEAVSLLVALGH--------KK 118 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChHHHHHHHhC-CCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCC--------Cc
Confidence 345677899988875432 22235666542 5555322 1233445555554 48
Q ss_pred EEEeecchhh-----chHHHHHHHHhcCCce----eecCccccccchHHHHHHH-hcC---ChHHHHHHHHHHHHHHhhC
Q 017159 219 IGVLATDATL-----SAGFYQEKLQNQGFEV----VLPDKATMEHVIIPTIEAL-NHR---DMEGARNLLRIGIQLLLVR 285 (376)
Q Consensus 219 VGlLaT~~T~-----~s~~Y~~~L~~~G~ev----v~p~~~~q~~~l~~~ie~l-k~G---~~~~a~~~l~~~i~~L~~~ 285 (376)
|++++.+.+. +..-|.+.++++|++. +.......+. ....+.++ +.+ .+.........+++.+.+.
T Consensus 119 I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~av~~~~d~~a~gv~~al~~~ 197 (265)
T cd06299 119 IGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQES-GYAGATKLLDQGATAIIAGDSMMTIGAIRAIHDA 197 (265)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecCcchHH-HHHHHHHHHcCCCCEEEEcCcHHHHHHHHHHHHh
Confidence 9988543322 1234788888888542 1221111111 11112222 222 0101112233444555555
Q ss_pred CC----CEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHh
Q 017159 286 AV----NAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 286 ga----DaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
|. |..|+|.-..+... -..+. +..| =+...+++.+++.+..
T Consensus 198 g~~vp~dv~v~g~d~~~~~~-~~~~~-~ttv~~~~~~~g~~a~~~l~~ 243 (265)
T cd06299 198 GLVIGEDISLIGFDDLPVFR-LQTPP-LTVIDQQVEQMGKRAVDMLLS 243 (265)
T ss_pred CCCCCcceeEEEeCCHHHHh-ccCCC-ceEEeCCHHHHHHHHHHHHHH
Confidence 53 77888888777543 11121 2223 2445566666666644
No 101
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=76.00 E-value=5.6 Score=38.59 Aligned_cols=46 Identities=30% Similarity=0.450 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
+-...+.+.++.|+++||-.||+=|-. +....++.+.++||.|+|.
T Consensus 159 ~~a~~l~~~A~ale~AGaf~ivlE~vp-~~la~~It~~l~IPtIGIG 204 (261)
T PF02548_consen 159 EEAEKLLEDAKALEEAGAFAIVLECVP-AELAKAITEALSIPTIGIG 204 (261)
T ss_dssp HHHHHHHHHHHHHHHHT-SEEEEESBB-HHHHHHHHHHSSS-EEEES
T ss_pred HHHHHHHHHHHHHHHcCccEEeeecCH-HHHHHHHHHhCCCCEEecC
Confidence 334456777888999999999999975 5678999999999999984
No 102
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=75.92 E-value=91 Score=31.29 Aligned_cols=110 Identities=14% Similarity=0.035 Sum_probs=59.7
Q ss_pred HHHHH-HcCCcEEEEeCCCchhh-HHHHhccCCCCeecc----------------------HHHHHHHHHHhcCCCCcCC
Q 017159 159 RAFLE-QAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV----------------------GECVAKELKEAKLKPLEAG 214 (376)
Q Consensus 159 ~~~L~-~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I----------------------veat~~~~~~~g~k~~~~~ 214 (376)
+++|. +-|+++|+=+.++.... ...+-++.++|++.. ....++.+.+..
T Consensus 60 a~~li~~d~v~~viG~~~S~~~~A~~~~~~~~~~~~i~~~~~~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~------- 132 (374)
T TIGR03669 60 TRRLLNRDKVDALWAGYSSATREAIRPIIDRNEQLYFYTNQYEGGVCDEYTFAVGATARQQLGTVVPYMVEEY------- 132 (374)
T ss_pred HHHHHHhCCCCEEEcCCchHHHHHHHHHHHhcCceEEcCcccccccCCCCEEEcCCChHHHHHHHHHHHHHcC-------
Confidence 34444 46899877666654432 333444556777642 123344444431
Q ss_pred CCceEEEeecchhhc---hHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEE
Q 017159 215 SGVRIGVLATDATLS---AGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVI 291 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVI 291 (376)
.+||++++.+...- ...+++.+++.|.+++.-.. ...|. .-+...+.++++.++|+|+
T Consensus 133 -g~~va~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~-------------~~~g~-----~Df~~~l~~i~~~~pD~V~ 193 (374)
T TIGR03669 133 -GKKIYTIAADYNFGQLSADWVRVIAKENGAEVVGEEF-------------IPLSV-----SQFSSTIQNIQKADPDFVM 193 (374)
T ss_pred -CCeEEEEcCCcHHHHHHHHHHHHHHHHcCCeEEeEEe-------------cCCCc-----chHHHHHHHHHHcCCCEEE
Confidence 24788888765432 23467777888887753110 00011 1244455566667788888
Q ss_pred ECC
Q 017159 292 IGS 294 (376)
Q Consensus 292 LGC 294 (376)
+..
T Consensus 194 ~~~ 196 (374)
T TIGR03669 194 SML 196 (374)
T ss_pred EcC
Confidence 754
No 103
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=75.85 E-value=26 Score=34.63 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=20.8
Q ss_pred CceEEEeecchhhch---HHHHHHHHhcCCceee
Q 017159 216 GVRIGVLATDATLSA---GFYQEKLQNQGFEVVL 246 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s---~~Y~~~L~~~G~evv~ 246 (376)
.+||+++..+...-. ..+++.+++.|++++.
T Consensus 140 ~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~ 173 (351)
T cd06334 140 GKKIALVYHDSPFGKEPIEALKALAEKLGFEVVL 173 (351)
T ss_pred CCeEEEEeCCCccchhhHHHHHHHHHHcCCeeee
Confidence 358998888654332 2366777888888764
No 104
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.55 E-value=12 Score=38.64 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=42.4
Q ss_pred cCCcEEEEeCC--CchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcC
Q 017159 165 AGARCIVMPCH--ISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQG 241 (376)
Q Consensus 165 ~Gad~IVIaCN--TAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G 241 (376)
.++|+||..-. ..|+.+...++ .++||++=++...+. .. .+.|||-||.| |--+.+....|...|
T Consensus 76 ~~~dlVV~Spgi~~~~p~~~~a~~-~~i~i~s~~e~~~~~---~~--------~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 76 DGFDVIFKTPSMRIDSPELVKAKE-EGAYITSEMEEFIKY---CP--------AKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred ccCCEEEECCCCCCCchHHHHHHH-cCCcEEechHHhhhh---cC--------CCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 36888877531 22455555544 579999855532221 11 23899999988 333456777788777
Q ss_pred Ccee
Q 017159 242 FEVV 245 (376)
Q Consensus 242 ~evv 245 (376)
..+.
T Consensus 144 ~~~~ 147 (458)
T PRK01710 144 YKTW 147 (458)
T ss_pred CCEE
Confidence 7654
No 105
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=75.23 E-value=26 Score=34.30 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=17.3
Q ss_pred ceEEEeecchhh---chHHHHHHHHhcCCceee
Q 017159 217 VRIGVLATDATL---SAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 217 ~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv~ 246 (376)
+||+++..+.-. ....+++.+++.|++++.
T Consensus 139 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~ 171 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVA 171 (347)
T ss_pred CeEEEEeccCchhhhHHHHHHHHHHHcCCeeEE
Confidence 478888754321 123356667777777653
No 106
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.83 E-value=71 Score=29.55 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=43.0
Q ss_pred HHHHHHcCCcEEEEeCCCc---hhhHHHHhccCCCCeeccH-----------------------HHHHHHHHH-hcCCCC
Q 017159 159 RAFLEQAGARCIVMPCHIS---HAWHGDVSEGCSIPFLHVG-----------------------ECVAKELKE-AKLKPL 211 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA---H~~~d~L~~~~~vPvl~Iv-----------------------eat~~~~~~-~g~k~~ 211 (376)
++.|.+.++|.|++..-.. ...++.+++ .++|++.+- ..+++++.+ .|.
T Consensus 50 i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~-~~ipvV~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~g~--- 125 (271)
T cd06312 50 IEAAIAAKPDGIVVTIPDPDALDPAIKRAVA-AGIPVISFNAGDPKYKELGALAYVGQDEYAAGEAAGERLAELKGG--- 125 (271)
T ss_pred HHHHHHhCCCEEEEeCCChHHhHHHHHHHHH-CCCeEEEeCCCCCccccccceEEeccChHHHHHHHHHHHHHhcCC---
Confidence 3456677999888754222 234555544 256655441 224566666 554
Q ss_pred cCCCCceEEEeecch-----hhchHHHHHHHHhcCCce
Q 017159 212 EAGSGVRIGVLATDA-----TLSAGFYQEKLQNQGFEV 244 (376)
Q Consensus 212 ~~~~~~rVGlLaT~~-----T~~s~~Y~~~L~~~G~ev 244 (376)
++|++++.+. ..+..-|.+.++++|+..
T Consensus 126 -----~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~ 158 (271)
T cd06312 126 -----KNVLCVIHEPGNVTLEDRCAGFADGLGGAGITE 158 (271)
T ss_pred -----CeEEEEecCCCCccHHHHHHHHHHHHHhcCcee
Confidence 4899887521 112233677777777653
No 107
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=74.58 E-value=22 Score=32.94 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCc-------h-hhHHHHhccCCCCeeccH----HHHHHHHHHhcCCCCcCCCCceEEEeec
Q 017159 157 HKRAFLEQAGARCIVMPCHIS-------H-AWHGDVSEGCSIPFLHVG----ECVAKELKEAKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTA-------H-~~~d~L~~~~~vPvl~Iv----eat~~~~~~~g~k~~~~~~~~rVGlLaT 224 (376)
+.++.+++.|+|.+.|.--++ + .++.++.+.+++|+.--. .+-++.+.+.|.. +| +++|
T Consensus 33 ~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad--------~v-vigs 103 (234)
T cd04732 33 EVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVS--------RV-IIGT 103 (234)
T ss_pred HHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCC--------EE-EECc
Confidence 445667789999997762211 1 136777778888876421 1334555566643 44 5787
Q ss_pred chhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
..--...++.+..+..|-+-+++.-+.....+. ..|..........+.++.+.+.|++.+++-
T Consensus 104 ~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 104 AAVKNPELVKELLKEYGGERIVVGLDAKDGKVA------TKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred hHHhChHHHHHHHHHcCCceEEEEEEeeCCEEE------ECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 654455668888888776444444332221110 011101111122345566777899988774
No 108
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=74.50 E-value=12 Score=35.73 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=56.0
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.|+-|-.||-...+..++.++|.......+.- .++++.-..+. ... + ....++.++ .++.
T Consensus 109 ~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiARTDa---~~~--------~----~~~~~eai~----Ra~a 168 (243)
T cd00377 109 PKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIARTDA---LLA--------G----EEGLDEAIE----RAKA 168 (243)
T ss_pred CccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEcCc---hhc--------c----CCCHHHHHH----HHHH
Confidence 35577778888899999999998877543322 55655443211 110 0 011134333 3455
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhccCCCCeec
Q 017159 162 LEQAGARCIVMPCHISHAWHGDVSEGCSIPFLH 194 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~ 194 (376)
..++|||++.+++-+.-..+.++.+..+.|++-
T Consensus 169 y~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~ 201 (243)
T cd00377 169 YAEAGADGIFVEGLKDPEEIRAFAEAPDVPLNV 201 (243)
T ss_pred HHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEEE
Confidence 778999999999876333456666666666543
No 109
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=74.45 E-value=67 Score=29.07 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=53.1
Q ss_pred ceEEEeecchh-----hchHHHHHHHHhcC-CceeecC--ccccccchHHHHHHHhcC--ChHH----HHHHHHHHHHHH
Q 017159 217 VRIGVLATDAT-----LSAGFYQEKLQNQG-FEVVLPD--KATMEHVIIPTIEALNHR--DMEG----ARNLLRIGIQLL 282 (376)
Q Consensus 217 ~rVGlLaT~~T-----~~s~~Y~~~L~~~G-~evv~p~--~~~q~~~l~~~ie~lk~G--~~~~----a~~~l~~~i~~L 282 (376)
++|++++.... ....-|++.++++| .++.... .....+ ..+.+..+... +... .......+++.+
T Consensus 122 ~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~d~~a~~~~~~l 200 (267)
T cd01536 122 GKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVAVQDGNWDREK-ALQAMEDLLQANPDIDAIFAANDSMALGAVAAL 200 (267)
T ss_pred ceEEEEEcccccchHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHH-HHHHHHHHHHhCCCccEEEEecCCchHHHHHHH
Confidence 49999976432 23344888888884 6543221 111111 22233333211 1110 112223344555
Q ss_pred hhCCC--CEEEECCCccccccCCC-CCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 283 LVRAV--NAVIIGSDEMQGVLPKD-DPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 283 ~~~ga--DaVILGCTElpll~~~~-~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
.+.|. |.-|.|+-..+...... .......|+ +...+++.+++.+...
T Consensus 201 ~~~g~~~~i~ivg~d~~~~~~~~~~~~~~~~tv~~~~~~~g~~a~~~l~~~ 251 (267)
T cd01536 201 KAAGRKGDVKIVGVDGSPEALAAIKEGGILATVAQDPYTQGYLAVEAAVKL 251 (267)
T ss_pred HhcCCCCCceEEecCCChhHHHHHHcCCeeEEEecCHHHHHHHHHHHHHHH
Confidence 55665 77778887666543111 111123333 3466777777766543
No 110
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=74.23 E-value=48 Score=32.85 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=16.3
Q ss_pred ceEEEeecchhhc---hHHHHHHHHhcCC
Q 017159 217 VRIGVLATDATLS---AGFYQEKLQNQGF 242 (376)
Q Consensus 217 ~rVGlLaT~~T~~---s~~Y~~~L~~~G~ 242 (376)
++|+++......- ...+++.+++.|+
T Consensus 155 ~~vaii~~~~~~g~~~~~~~~~~~~~~g~ 183 (377)
T cd06379 155 NKVILLVSDDHEGRAAQKRFETLLEEREI 183 (377)
T ss_pred eEEEEEEEcCcchhHHHHHHHHHHHhcCC
Confidence 4888887754321 2336677777777
No 111
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=74.15 E-value=70 Score=29.16 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=77.5
Q ss_pred HHHHHHHcCCcEEEE-eCCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCc
Q 017159 158 KRAFLEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 158 ~~~~L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~ 217 (376)
.++.|.+.++|.|++ +++..-..++.+++ .++|++.+ ...+++.+.+.|. +
T Consensus 47 ~~~~l~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~ 117 (268)
T cd01575 47 LLRTLLSRRPAGLILTGLEHTERTRQLLRA-AGIPVVEIMDLPPDPIDMAVGFSHAEAGRAMARHLLARGY--------R 117 (268)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHh-cCCCEEEEecCCCCCCCCeEEeCcHHHHHHHHHHHHHCCC--------C
Confidence 335567789998866 44432233444433 35666543 2234555665554 3
Q ss_pred eEEEeecchh-----hchHHHHHHHHhcCCce--e--ecCccccccchHHHHHHH-hcC-ChHH----HHHHHHHHHHHH
Q 017159 218 RIGVLATDAT-----LSAGFYQEKLQNQGFEV--V--LPDKATMEHVIIPTIEAL-NHR-DMEG----ARNLLRIGIQLL 282 (376)
Q Consensus 218 rVGlLaT~~T-----~~s~~Y~~~L~~~G~ev--v--~p~~~~q~~~l~~~ie~l-k~G-~~~~----a~~~l~~~i~~L 282 (376)
+|++++.+.. .+..-|++.++++|.+. . .+.....+. ....++.+ +.. +.+. .......+++.+
T Consensus 118 ~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l 196 (268)
T cd01575 118 RIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSSFAL-GRELLAELLARWPDLDAVFCSNDDLALGALFEC 196 (268)
T ss_pred cEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCCHHH-HHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHH
Confidence 8999887653 22233778888887632 1 111111110 11122232 221 1110 112223444555
Q ss_pred hhCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 283 LVRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 283 ~~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.+.| -|..|+|+-..+.... ..+ .+..|+ +.+.+++.+++.+..
T Consensus 197 ~~~g~~~p~di~vig~d~~~~~~~-~~~-~itti~~~~~~~g~~a~~~l~~ 245 (268)
T cd01575 197 QRRGISVPEDIAIAGFGDLEIAAA-LPP-ALTTVRTPRREIGRRAAELLLA 245 (268)
T ss_pred HHhCCCCCcceEEEecCCchhhhc-cCC-CceeeeCCHHHHHHHHHHHHHH
Confidence 5544 3777888888775421 112 233343 345566666666654
No 112
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=73.82 E-value=38 Score=32.79 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=21.1
Q ss_pred HHHHHH-cCCcEEEEeCCCchhh-HHHHhccCCCCeec
Q 017159 159 RAFLEQ-AGARCIVMPCHISHAW-HGDVSEGCSIPFLH 194 (376)
Q Consensus 159 ~~~L~~-~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~ 194 (376)
++.|.+ .++++|+-++.+.... .-.+-+..++|+|.
T Consensus 59 a~~li~~~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~ 96 (346)
T cd06330 59 ARELVENEGVDMLIGLISSGVALAVAPVAEELKVFFIA 96 (346)
T ss_pred HHHHHhccCCcEEEcccchHHHHHHHHHHHHcCCeEEE
Confidence 344544 4899888776654332 33344455778775
No 113
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=73.36 E-value=47 Score=32.05 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhCCCCEEEECCCcc
Q 017159 274 LLRIGIQLLLVRAVNAVIIGSDEM 297 (376)
Q Consensus 274 ~l~~~i~~L~~~gaDaVILGCTEl 297 (376)
.+...++.+++.++|+||+.|..-
T Consensus 205 d~~~~l~~l~~~~~~vvv~~~~~~ 228 (348)
T cd06350 205 DIKRILKKLKSSTARVIVVFGDED 228 (348)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCcH
Confidence 456667777778889998888763
No 114
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.81 E-value=65 Score=33.65 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=49.6
Q ss_pred CCcEEEEeCC--Cch----hhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHH
Q 017159 166 GARCIVMPCH--ISH----AWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQ 238 (376)
Q Consensus 166 Gad~IVIaCN--TAH----~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~ 238 (376)
++|+||+.-. ..| +.+.+.++ .++|+++-++...+.+...+.+. ...+.|||-||.| |--+.+....|+
T Consensus 69 ~~d~vv~sp~I~~~~~~~~~~~~~a~~-~~i~v~~~~e~~~~~~~~l~~~~---~~~~~I~VTGTnGKTTTt~ml~~iL~ 144 (498)
T PRK02006 69 GVDLVALSPGLSPLEAALAPLVAAARE-RGIPVWGEIELFAQALAALGASG---YAPKVLAITGTNGKTTTTALTGLLCE 144 (498)
T ss_pred CCCEEEECCCCCCcccccCHHHHHHHH-CCCcEEEHHHHHHHHHhhhcccc---CCCCEEEEECCCcHHHHHHHHHHHHH
Confidence 7898887532 222 55555543 58999998887766554332110 0114799999988 333456778888
Q ss_pred hcCCceeec
Q 017159 239 NQGFEVVLP 247 (376)
Q Consensus 239 ~~G~evv~p 247 (376)
..|..+...
T Consensus 145 ~~g~~~~~~ 153 (498)
T PRK02006 145 RAGKKVAVA 153 (498)
T ss_pred HcCCCEEEE
Confidence 888876643
No 115
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=72.59 E-value=78 Score=29.01 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=75.8
Q ss_pred HHHHHHcCCcEEEEe-CCCchhhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCCc
Q 017159 159 RAFLEQAGARCIVMP-CHISHAWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 159 ~~~L~~~Gad~IVIa-CNTAH~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~~ 217 (376)
++.|.+.++|.|++. ++.....++.+.+ .++|++.+ ...+++.+.+.|. +
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~i~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~g~--------~ 118 (270)
T cd06296 48 VERLSARRTDGVILVTPELTSAQRAALRR-TGIPFVVVDPAGDPDADVPSVGATNWAGGLAATEHLLELGH--------R 118 (270)
T ss_pred HHHHHHcCCCEEEEecCCCChHHHHHHhc-CCCCEEEEecccCCCCCCCEEEeCcHHHHHHHHHHHHHcCC--------C
Confidence 345667899988664 5544444666644 35565443 2334555565554 3
Q ss_pred eEEEeecchhh-----chHHHHHHHHhcCCceee----cCccccccchHHHHHH-HhcCC-hH----HHHHHHHHHHHHH
Q 017159 218 RIGVLATDATL-----SAGFYQEKLQNQGFEVVL----PDKATMEHVIIPTIEA-LNHRD-ME----GARNLLRIGIQLL 282 (376)
Q Consensus 218 rVGlLaT~~T~-----~s~~Y~~~L~~~G~evv~----p~~~~q~~~l~~~ie~-lk~G~-~~----~a~~~l~~~i~~L 282 (376)
+|++++..... +..-|.+.++++|+.+.. ......+. ....+++ ++.+. .+ ........+++.|
T Consensus 119 ~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l 197 (270)
T cd06296 119 RIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALVREGDFSTES-GFRAAAELLALPERPTAIFAGNDLMALGVYEAA 197 (270)
T ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHcCCCCChHHheeCCCCHHH-HHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHH
Confidence 89988543211 122367778877765421 11111111 1112222 22221 11 1122233444555
Q ss_pred hhCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 283 LVRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 283 ~~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.+.| -|..|.|.-..+..... . ..+..|+ +.+.+++.+++.+..
T Consensus 198 ~~~g~~~p~~i~v~~~d~~~~~~~~-~-~~~~~i~~~~~~~g~~a~~~l~~ 246 (270)
T cd06296 198 RERGLRIPEDLSVVGFDDLPEARWV-S-PPLTTVRQPLREMGRAAVRLLLR 246 (270)
T ss_pred HHhCCCCCCceEEEEECChhhhccc-C-CCceEecCCHHHHHHHHHHHHHH
Confidence 5444 36777787776654221 1 1223343 334566666666544
No 116
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=72.57 E-value=49 Score=32.46 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=36.9
Q ss_pred CceEEEeecchhhc---hHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 216 GVRIGVLATDATLS---AGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 216 ~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.+||++++.+...- ...+++.+++.|.+++.-.. . ..+. ..+...+.++.+.++|+|++
T Consensus 133 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~------~-------~~~~-----~D~~~~v~~l~~~~pd~v~~ 194 (348)
T cd06355 133 GKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEY------L-------PLGH-----TDFQSIINKIKAAKPDVVVS 194 (348)
T ss_pred CCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEE------e-------cCCh-----hhHHHHHHHHHHhCCCEEEE
Confidence 35899998765322 23466778888888764210 0 0011 23445556677778888887
Q ss_pred CCC
Q 017159 293 GSD 295 (376)
Q Consensus 293 GCT 295 (376)
+..
T Consensus 195 ~~~ 197 (348)
T cd06355 195 TVN 197 (348)
T ss_pred ecc
Confidence 654
No 117
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=72.42 E-value=33 Score=34.38 Aligned_cols=77 Identities=8% Similarity=0.007 Sum_probs=46.4
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 160 AFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rVG 220 (376)
-.|-+.|+-+|+=|.+..... ...+.+..+||+|.. ..+.++.++..+. ++|+
T Consensus 51 C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~~~w--------k~va 122 (370)
T cd06389 51 CSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQW--------DKFA 122 (370)
T ss_pred HHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHHHhcCC--------cEEE
Confidence 346677998877666654443 677888889999852 2334444444444 3899
Q ss_pred EeecchhhchHHHH---HHHHhcCCcee
Q 017159 221 VLATDATLSAGFYQ---EKLQNQGFEVV 245 (376)
Q Consensus 221 lLaT~~T~~s~~Y~---~~L~~~G~evv 245 (376)
++.-.. -..+..+ +.+++.|.+++
T Consensus 123 ilYdsd-~gl~~lq~l~~~~~~~g~~V~ 149 (370)
T cd06389 123 YLYDSD-RGLSTLQAVLDSAAEKKWQVT 149 (370)
T ss_pred EEecCc-hHHHHHHHHHHhhccCCceEE
Confidence 998532 2223233 34455576655
No 118
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=72.41 E-value=94 Score=29.86 Aligned_cols=122 Identities=9% Similarity=0.050 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecchh-----hchHHHHHHHHhcCCc---eeecCccccccchHHHHHH-HhcCC
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDAT-----LSAGFYQEKLQNQGFE---VVLPDKATMEHVIIPTIEA-LNHRD 267 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~e---vv~p~~~~q~~~l~~~ie~-lk~G~ 267 (376)
..+++++.+.|.+ +||+++.... .+..-|.+.++.+|+. .+.......+. -...++. +..+.
T Consensus 163 ~~a~~~l~~~G~~--------~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 233 (327)
T PRK10339 163 KEIIDFYINQGVN--------RIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSSSS-GYELAKQMLARED 233 (327)
T ss_pred HHHHHHHHHCCCC--------eEEEeCCccccchhhHHHHHHHHHHHHcCCCChhheeecCcChhH-HHHHHHHHHhCCC
Confidence 4556677777664 9999965322 1223367777777761 11111111111 1112222 22221
Q ss_pred -hH----HHHHHHHHHHHHHhhCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 268 -ME----GARNLLRIGIQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 268 -~~----~a~~~l~~~i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
.+ ........+++.+.+.| -|.-|.|+.+.+...-. .+....+--+.+.+++.+++.+.+
T Consensus 234 ~~~ai~~~~D~~A~g~~~al~~~g~~vP~di~vigfD~~~~~~~~-~p~ltti~~~~~~~g~~A~~~l~~ 302 (327)
T PRK10339 234 YPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTARFT-FPPLSTVRIHSEMMGSQGVNLLYE 302 (327)
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCChhHHHhC-CCCceeeecCHHHHHHHHHHHHHH
Confidence 11 11223334555666665 38899999888754321 121112334566788888877654
No 119
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=72.25 E-value=26 Score=34.43 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch----hhHHHHhccCCCCeecc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISH----AWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH----~~~d~L~~~~~vPvl~I 195 (376)
+...++.|.+.++.+|+-|..+.- .....+.+..+||+|+.
T Consensus 52 ~~~~~~~l~~~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~ 96 (362)
T cd06367 52 LLSVCDLLVVQVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGI 96 (362)
T ss_pred HHHHHHHhcccceEEEEecCCCCccchhhhhhhhhhhhcCcEEEe
Confidence 344556676667777777665443 33677777788888864
No 120
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=72.06 E-value=7.5 Score=38.98 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhh--HHHHhccCCCCeec
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAW--HGDVSEGCSIPFLH 194 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~ 194 (376)
.+.++.|+++|||.+=++|++.-.. +.+|++++++|++.
T Consensus 39 v~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVa 79 (361)
T COG0821 39 VAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVA 79 (361)
T ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 3345669999999999999998776 89999999999763
No 121
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.05 E-value=82 Score=29.01 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=42.8
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeeccH------------------HHHHHHHHHh--cCCCCcCCCC
Q 017159 160 AFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHVG------------------ECVAKELKEA--KLKPLEAGSG 216 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~Iv------------------eat~~~~~~~--g~k~~~~~~~ 216 (376)
+.+...++|.|++...... ..++++++ .++|++.+- ..+++++.+. |.
T Consensus 51 ~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~-~~ipvv~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~-------- 121 (271)
T cd06321 51 DNFIAAKVDLILLNAVDSKGIAPAVKRAQA-AGIVVVAVDVAAEGADATVTTDNVQAGEISCQYLADRLGGK-------- 121 (271)
T ss_pred HHHHHhCCCEEEEeCCChhHhHHHHHHHHH-CCCeEEEecCCCCCccceeeechHHHHHHHHHHHHHHhCCC--------
Confidence 4466788999888543222 23444433 356666542 3345556655 44
Q ss_pred ceEEEeecch----hhchHHHHHHHHhc-CCc
Q 017159 217 VRIGVLATDA----TLSAGFYQEKLQNQ-GFE 243 (376)
Q Consensus 217 ~rVGlLaT~~----T~~s~~Y~~~L~~~-G~e 243 (376)
++|++++.+. ..+..-|.+.++++ +++
T Consensus 122 ~~i~~i~g~~~~~~~~R~~g~~~~~~~~~~~~ 153 (271)
T cd06321 122 GNVAILNGPPVSAVLDRVAGCKAALAKYPGIK 153 (271)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCcE
Confidence 4899996542 22223377778877 564
No 122
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=71.77 E-value=75 Score=28.47 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=41.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhh--HHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCC
Q 017159 159 RAFLEQAGARCIVMPCHISHAW--HGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~ 216 (376)
++.+.+.++|++|+.-...... ++.+.+ .++|++.+ ....++.+.+.|.
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~-~~ip~v~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~-------- 118 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPTIVKLARK-AGIPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEHLAEKGH-------- 118 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchhHHHHhhh-cCCCEEEeccCCCCCcccceEecCcHHHHHHHHHHHHHhcC--------
Confidence 3445566888777643322222 444432 34555432 3445666776654
Q ss_pred ceEEEeecchh-----hchHHHHHHHHhcC
Q 017159 217 VRIGVLATDAT-----LSAGFYQEKLQNQG 241 (376)
Q Consensus 217 ~rVGlLaT~~T-----~~s~~Y~~~L~~~G 241 (376)
++|++++.... .....|++.+++.|
T Consensus 119 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 148 (264)
T cd01537 119 RRIALLAGPLGSSTARERVAGFKDALKEAG 148 (264)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHHHHcC
Confidence 49999977533 22344777788777
No 123
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=71.53 E-value=9.3 Score=37.01 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
++-.+.+.+.++.|+++||=.+|+=|-- .....+|.+.++||.|+|.
T Consensus 157 ~~~a~~l~~dA~ale~AGaf~ivlE~Vp-~~lA~~IT~~lsiPtIGIG 203 (268)
T COG0413 157 EESAEKLLEDAKALEEAGAFALVLECVP-AELAKEITEKLSIPTIGIG 203 (268)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEeccH-HHHHHHHHhcCCCCEEeec
Confidence 3455567778888999999999999975 5678999999999999985
No 124
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=71.25 E-value=11 Score=36.44 Aligned_cols=54 Identities=26% Similarity=0.407 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHh----c----cCCCCeeccHHHHHHHH
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVS----E----GCSIPFLHVGECVAKEL 203 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~----~----~~~vPvl~Iveat~~~~ 203 (376)
...+...+.++.+++.|||.||-+|-+-+..++.-+ + ..++||+|+++-.+.++
T Consensus 206 ~s~~l~~~k~~~~~~~gad~ivt~Cp~C~~~l~~~~~~~~~~~g~~~~~~V~h~~elLa~al 267 (290)
T TIGR03288 206 VALDMTKEKLENMKEAGADCIVNVCPFCHLQFDRGQIEIKEKFGEEYNIPVLHYSQLLGLAM 267 (290)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCchHHHHHHHHHHHHHHhcCCCCCcCeeeHHHHHHHHc
Confidence 344445566778889999999999999887776543 1 24799999998876654
No 125
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=71.25 E-value=47 Score=31.97 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=22.9
Q ss_pred HHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc
Q 017159 161 FLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV 195 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I 195 (376)
.|.+.|+.+|+=|.++.... ...+.+..++|+|+.
T Consensus 58 ~li~~~V~aiiG~~~S~~~~av~~~~~~~~vP~Is~ 93 (327)
T cd06382 58 DLLQQGVAAIFGPSSSEASSIVQSICDAKEIPHIQT 93 (327)
T ss_pred hhhhcCcEEEECCCChhHHHHHHHHHhccCCCceec
Confidence 34334888888776665443 556667778888863
No 126
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.08 E-value=33 Score=35.92 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=47.2
Q ss_pred CCcEEEEeCC--CchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcCC
Q 017159 166 GARCIVMPCH--ISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQGF 242 (376)
Q Consensus 166 Gad~IVIaCN--TAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G~ 242 (376)
++|+||..-. -.|+.+.+.++ .++||++=++...+......+. .+.+.|||-||.| |--+.+....|+..|.
T Consensus 70 ~~D~VV~SpGi~~~~p~~~~a~~-~gi~v~~~iel~~~~~~~~~~~----~~~~vIgITGTnGKTTTt~li~~iL~~~g~ 144 (488)
T PRK03369 70 DYALVVTSPGFRPTAPVLAAAAA-AGVPIWGDVELAWRLDAAGCYG----PPRRWLVVTGTNGKTTTTSMLHAMLIAAGR 144 (488)
T ss_pred cCCEEEECCCCCCCCHHHHHHHH-CCCcEeeHHHHhhhhhhhhccC----CCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 5787766543 23666666665 4899999877654433221111 1124799999988 3344567778888776
Q ss_pred ceeec
Q 017159 243 EVVLP 247 (376)
Q Consensus 243 evv~p 247 (376)
.....
T Consensus 145 ~~~~~ 149 (488)
T PRK03369 145 RSVLC 149 (488)
T ss_pred ceEEe
Confidence 55443
No 127
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=70.94 E-value=83 Score=28.62 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=43.8
Q ss_pred HHHHHcCCcEEEEeCCCch-hhHHHHhccCCCCeecc-----------------HHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 160 AFLEQAGARCIVMPCHISH-AWHGDVSEGCSIPFLHV-----------------GECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH-~~~d~L~~~~~vPvl~I-----------------veat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
+.|.+.++|.+++...... ..++.+++. ++|++.+ ...+++++.+.|. ++|++
T Consensus 49 ~~l~~~~~dgii~~~~~~~~~~~~~~~~~-~ipvv~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~~i~~ 119 (259)
T cd01542 49 ELLARQKVDGIILLATTITDEHREAIKKL-NVPVVVVGQDYPGISSVVYDDYGAGYELGEYLAQQGH--------KNIAY 119 (259)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHHHHHhcC-CCCEEEEeccCCCCCEEEECcHHHHHHHHHHHHHcCC--------CcEEE
Confidence 4577789999998754422 335555442 4555422 2345666666554 48999
Q ss_pred eecchh------hchHHHHHHHHhcCC
Q 017159 222 LATDAT------LSAGFYQEKLQNQGF 242 (376)
Q Consensus 222 LaT~~T------~~s~~Y~~~L~~~G~ 242 (376)
++...+ .+..-|++.++++|.
T Consensus 120 v~~~~~~~~~~~~r~~gf~~~~~~~~~ 146 (259)
T cd01542 120 LGVSESDIAVGILRKQGYLDALKEHGI 146 (259)
T ss_pred EcCCcccchhHHHHHHHHHHHHHHcCC
Confidence 964321 112337788888887
No 128
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=70.50 E-value=88 Score=28.74 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=78.3
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+.+.++|.|++..+..... ++.+.+ .++|++-+ ...+++.+.+.|. ++
T Consensus 48 i~~~~~~~vdgii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~~ 118 (268)
T cd06270 48 IEFLLERRCDALILHSKALSDDELIELAA-QVPPLVLINRHIPGLADRCIWLDNEQGGYLATEHLIELGH--------RK 118 (268)
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHhh-CCCCEEEEeccCCCCCCCeEEECcHHHHHHHHHHHHHCCC--------ce
Confidence 3456678999888765443332 555543 35565443 2234566666554 48
Q ss_pred EEEeecchh-----hchHHHHHHHHhcCCce----eecCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHHHh
Q 017159 219 IGVLATDAT-----LSAGFYQEKLQNQGFEV----VLPDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQLLL 283 (376)
Q Consensus 219 VGlLaT~~T-----~~s~~Y~~~L~~~G~ev----v~p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~L~ 283 (376)
|++++.... .+..-|++.++++|++. +.......+. ....++. ++.+ +.+ ........+++.+.
T Consensus 119 i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~ 197 (268)
T cd06270 119 IACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFTEEG-GYAAMQELLARGAPFTAVFCANDEMAAGAISALR 197 (268)
T ss_pred EEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCCCHHH-HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 999865321 22233778888888653 2222211111 1122223 2222 111 01223334445555
Q ss_pred hCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 284 VRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 284 ~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
+.| -|.-|.|+-..+.... ..+ .+..|+ +...+++.+++++...
T Consensus 198 ~~g~~ip~di~v~g~d~~~~~~~-~~~-~~~ti~~~~~~~g~~a~~~l~~~ 246 (268)
T cd06270 198 EHGISVPQDVSIIGFDDVLLARY-LYP-KLTTVHYPIEEMAQMAAKLALQL 246 (268)
T ss_pred HcCCCCCCceeEEEecCchHhhh-cCC-CceEeecCHHHHHHHHHHHHHHH
Confidence 444 3666777777664321 111 233443 3456677777766554
No 129
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=70.46 E-value=81 Score=28.31 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=43.0
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+.+.++|+|++........ ++.+. ..++|++.+ ...+++.+.+.|. ++
T Consensus 48 ~~~~~~~~~d~iii~~~~~~~~~~~~~~-~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~ 118 (264)
T cd06267 48 LELLLSRRVDGIILAPSRLDDELLEELA-ALGIPVVLVDRPLDGLGVDSVGIDNRAGAYLAVEHLIELGH--------RR 118 (264)
T ss_pred HHHHHHcCcCEEEEecCCcchHHHHHHH-HcCCCEEEecccccCCCCCEEeeccHHHHHHHHHHHHHCCC--------ce
Confidence 3456677999988866543332 33333 335666544 2334555555543 48
Q ss_pred EEEeecchh-----hchHHHHHHHHhcCC
Q 017159 219 IGVLATDAT-----LSAGFYQEKLQNQGF 242 (376)
Q Consensus 219 VGlLaT~~T-----~~s~~Y~~~L~~~G~ 242 (376)
|+++..... .+..-|++.++++|.
T Consensus 119 i~~i~~~~~~~~~~~r~~g~~~~~~~~~~ 147 (264)
T cd06267 119 IAFIGGPPDLSTARERLEGYREALEEAGI 147 (264)
T ss_pred EEEecCCCccchHHHHHHHHHHHHHHcCC
Confidence 999976533 112336777887774
No 130
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.12 E-value=97 Score=29.05 Aligned_cols=122 Identities=11% Similarity=0.131 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecchh-----hchHHHHHHHHhcCCceee---cCccccccchHHHHHH-HhcC-
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDAT-----LSAGFYQEKLQNQGFEVVL---PDKATMEHVIIPTIEA-LNHR- 266 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~evv~---p~~~~q~~~l~~~ie~-lk~G- 266 (376)
..+++++.+.|++ +||+++.+.. -+..-|.+.++++|++... ......+. -...++. ++..
T Consensus 107 ~~a~~~L~~~G~~--------~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 177 (269)
T cd06287 107 RMLLEHLRAQGAR--------QIALIVGSARRNSYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEEA-GYAACAQLLAQHP 177 (269)
T ss_pred HHHHHHHHHcCCC--------cEEEEeCCcccccHHHHHHHHHHHHHHcCCCcceeEecCCCChHH-HHHHHHHHHhCCC
Confidence 3455667776664 8999964321 1122378888888876421 11111111 1112222 2222
Q ss_pred ChHH----HHHHHHHHHHHHhhCCC----CEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 267 DMEG----ARNLLRIGIQLLLVRAV----NAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 267 ~~~~----a~~~l~~~i~~L~~~ga----DaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
..+. .......+++.+.+.|. |.-|+|+-+-+. ..-..+..-.+--+...+++.+++.+.+
T Consensus 178 ~~~ai~~~~d~~A~gvl~al~~~gl~vP~dvsvig~~d~~~-~~~~~p~ltti~~~~~~~g~~A~~~l~~ 246 (269)
T cd06287 178 DLDALCVPVDAFAVGAVRAATELGRAVPDQLRVVTRYDGLR-ARTSEPPLTAVDLHLDEVAEQAVDLLFA 246 (269)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeccCchh-hccCCCCcccccCCHHHHHHHHHHHHHH
Confidence 1111 12333444555555554 677777444443 2222221112333567777777777654
No 131
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=69.95 E-value=18 Score=37.36 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=45.0
Q ss_pred CCcEEEEeCC--CchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcCC
Q 017159 166 GARCIVMPCH--ISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQGF 242 (376)
Q Consensus 166 Gad~IVIaCN--TAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G~ 242 (376)
++|+||+.-. -.|+.+.+.++ .++||++-+|...+.... .+.|||-||.| |--+.+....|+..|.
T Consensus 66 ~~d~vv~spgi~~~~~~~~~a~~-~~i~i~~~~e~~~~~~~~----------~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 66 DADVVVYSSAIPDDNPELVAARE-LGIPVVRRAEMLAELMRF----------RTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-CCCcEEeHHHHHHHHHcc----------CcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 6898776432 23566666654 489999988776544332 13899999988 3344567778888775
Q ss_pred c
Q 017159 243 E 243 (376)
Q Consensus 243 e 243 (376)
.
T Consensus 135 ~ 135 (461)
T PRK00421 135 D 135 (461)
T ss_pred C
Confidence 3
No 132
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=68.80 E-value=46 Score=31.68 Aligned_cols=128 Identities=10% Similarity=-0.020 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCeecc---H-HHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 156 RHKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFLHV---G-ECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl~I---v-eat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
.+.++.+++.|+|.+.+.--+.- .++.++.+.+++|+.-- - .+-++.+...|.. +| ++|
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~--------~v-ivg 103 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGAD--------KV-SIN 103 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCC--------EE-EEC
Confidence 34556778899998866533321 13677777888997642 1 2234444555543 55 789
Q ss_pred cchhhchHHHHHHHHhcCCceeecCccccccchHH-HHHHHh-cCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 224 TDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIP-TIEALN-HRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~-~ie~lk-~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
|..--...++.+..+.+|-+-++.+-+..+..+.. --..++ +|..+.........++.+.+.|+|.|++
T Consensus 104 t~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iiv 174 (254)
T TIGR00735 104 TAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILL 174 (254)
T ss_pred hhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 97766666777777777633333332211100000 000011 1222222233455667777889999888
No 133
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=68.67 E-value=97 Score=28.52 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=44.2
Q ss_pred HHHHHcCCcEEEE-eCCCc-hhhHHHHhccCCCCeeccH------------------HHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVM-PCHIS-HAWHGDVSEGCSIPFLHVG------------------ECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVI-aCNTA-H~~~d~L~~~~~vPvl~Iv------------------eat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.+++ +|+.. ..+++.+++ .++|++-+- ..+++.+.+.|. ++|
T Consensus 49 ~~l~~~~vdgii~~~~~~~~~~~~~~~~~-~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G~--------~~i 119 (269)
T cd06281 49 RSFEQRRMDGIIIAPGDERDPELVDALAS-LDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISLGH--------RRI 119 (269)
T ss_pred HHHHHcCCCEEEEecCCCCcHHHHHHHHh-CCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHHCCC--------cEE
Confidence 4566779998875 56432 234555544 245554431 234555666554 389
Q ss_pred EEeecchh-----hchHHHHHHHHhcCCce
Q 017159 220 GVLATDAT-----LSAGFYQEKLQNQGFEV 244 (376)
Q Consensus 220 GlLaT~~T-----~~s~~Y~~~L~~~G~ev 244 (376)
+++++... .+..-|.+.++++|+++
T Consensus 120 ~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~ 149 (269)
T cd06281 120 ALVGGGSNTRPGRERLEGYKAAFAAAGLPP 149 (269)
T ss_pred EEecCccccccHHHHHHHHHHHHHHcCCCC
Confidence 99977432 12233778888888764
No 134
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=68.21 E-value=45 Score=31.79 Aligned_cols=22 Identities=0% Similarity=0.072 Sum_probs=13.8
Q ss_pred HHHHHHHHhhCCCCEEEECCCc
Q 017159 275 LRIGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 275 l~~~i~~L~~~gaDaVILGCTE 296 (376)
+...++.+.+.++|+||+.|..
T Consensus 180 ~~~~~~~~~~~~~d~i~~~~~~ 201 (334)
T cd06347 180 FSAQLTKIKAKNPDVIFLPGYY 201 (334)
T ss_pred HHHHHHHHHhcCCCEEEEcCch
Confidence 3444455556677888877754
No 135
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=67.25 E-value=1.5e+02 Score=30.05 Aligned_cols=166 Identities=15% Similarity=0.053 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHH---HHcCCcEEEEeCCCchhhHHHHhccCC---------CCeeccHHHHHHHHHHhc--CCCCcCCC
Q 017159 150 AVSQNLRHKRAFL---EQAGARCIVMPCHISHAWHGDVSEGCS---------IPFLHVGECVAKELKEAK--LKPLEAGS 215 (376)
Q Consensus 150 ~i~~~l~~~~~~L---~~~Gad~IVIaCNTAH~~~d~L~~~~~---------vPvl~Iveat~~~~~~~g--~k~~~~~~ 215 (376)
...+...+.++.| .+.|+|.||++|.+-...+.+....+. ..|.+.+....+.+.+.. .++.....
T Consensus 220 ~~~~~a~~n~~~~~~~~~~g~~~Vvt~c~~C~~~l~~y~~~l~~~~~~~~~~~~v~~~~~~l~e~L~~~~~~~~~~~~~~ 299 (407)
T PRK11274 220 GGLARMRRNIDAWWPAIEAGAEAIVMTASGCGATVKEYGHLLRDDPAYAEKAARVSALTRDLSELLPAEPLELLALLGRP 299 (407)
T ss_pred HHHHHHHHHHHHhhhhhhcCCCEEEECCccHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhHHHHHHHhcccccccccCC
Confidence 3333334444443 678999999999986665544322211 012222222333333221 11000001
Q ss_pred CceEEEeecchhh----chHHHHHHHHhcCCceeecCcc--ccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCE
Q 017159 216 GVRIGVLATDATL----SAGFYQEKLQNQGFEVVLPDKA--TMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNA 289 (376)
Q Consensus 216 ~~rVGlLaT~~T~----~s~~Y~~~L~~~G~evv~p~~~--~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDa 289 (376)
+.+|.+=-.=... ....-.+.|++.|.+++..... |=. .-..+ .+ ...+.+.+...+.++.+.+.|+|.
T Consensus 300 ~~~v~~HdpChl~~~~~~~~~~r~ll~~~g~~~~e~~~~~~CCG--~gG~~-~~--~~~e~s~~i~~~k~~~~~~~~ad~ 374 (407)
T PRK11274 300 DRRVAFHPPCTLQHGQKLRGKVERLLTRLGFELTLVADSHLCCG--SAGTY-SL--LQPELSYQLRDNKLAALEAGKPEV 374 (407)
T ss_pred CCeEEEeCcchhhcccCcHhhHHHHHHhCCCeEEECCCCCCCcC--cchhh-hc--CCHHHHHHHHHHHHHHHHhcCCCE
Confidence 2355431111000 1123445666668876654222 111 10001 11 122334455555567777789999
Q ss_pred EEECCCccccccCCCCCCCCeeeehHHHHHHHH
Q 017159 290 VIIGSDEMQGVLPKDDPLLKKCIDPMDALARST 322 (376)
Q Consensus 290 VILGCTElpll~~~~~~~~vpvIDp~~~lA~a~ 322 (376)
||-+|+-=-.-+.. ..++++.++++.+++++
T Consensus 375 ivt~Cp~C~~ql~~--~~~~~v~H~~ell~~al 405 (407)
T PRK11274 375 IVTANIGCQTHLQS--GTRTPVRHWIELVDEAL 405 (407)
T ss_pred EEecCcCHHHHHcC--CCCCceeeHHHHHHHHh
Confidence 99999532222222 23578899999999865
No 136
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.88 E-value=43 Score=34.91 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=44.6
Q ss_pred CCcEEEEeCCC--chhhHHHHhccCCCCeeccHHHHHHHHHH-hcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcC
Q 017159 166 GARCIVMPCHI--SHAWHGDVSEGCSIPFLHVGECVAKELKE-AKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQG 241 (376)
Q Consensus 166 Gad~IVIaCNT--AH~~~d~L~~~~~vPvl~Iveat~~~~~~-~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G 241 (376)
++|+||..--- .|+.+.+.++ .++||++=++.......+ .+. ..+.|||=||.| |-.+.+....|+..|
T Consensus 69 ~~d~vV~SpgI~~~~p~~~~a~~-~~i~i~~~~el~~~~~~~~~~~------~~~~IaITGTnGKTTTt~ll~~iL~~~g 141 (468)
T PRK04690 69 AFDVVVKSPGISPYRPEALAAAA-RGTPFIGGTALWFAEHAARDGV------VPGTVCVTGTKGKSTTTALLAHLLRAAG 141 (468)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-cCCcEEEHHHHHHHHHhhccCC------CCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 68888765422 4666666654 589999966653333221 100 113799999987 334456667777777
Q ss_pred Cceeec
Q 017159 242 FEVVLP 247 (376)
Q Consensus 242 ~evv~p 247 (376)
..+...
T Consensus 142 ~~~~~~ 147 (468)
T PRK04690 142 HRTALV 147 (468)
T ss_pred CcEEEc
Confidence 554433
No 137
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=66.56 E-value=1e+02 Score=28.11 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=45.0
Q ss_pred HHHHHcCCcEEEE-eCCCchhhHHHHhccCCCCeeccH-------------------HHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHVG-------------------ECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~Iv-------------------eat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|++++ +++..-..++.+++ .++|++-+- ..+++.+.+.|. ++|
T Consensus 49 ~~l~~~~vdgiii~~~~~~~~~~~~l~~-~~iPvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~~i 119 (268)
T cd06273 49 RKLLERGVDGLALIGLDHSPALLDLLAR-RGVPYVATWNYSPDSPYPCVGFDNREAGRLAARHLIALGH--------RRI 119 (268)
T ss_pred HHHHhcCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCC--------CeE
Confidence 4566778998876 44433233555543 367766541 345566666554 399
Q ss_pred EEeecch------hhchHHHHHHHHhcCCce
Q 017159 220 GVLATDA------TLSAGFYQEKLQNQGFEV 244 (376)
Q Consensus 220 GlLaT~~------T~~s~~Y~~~L~~~G~ev 244 (376)
++++.+. ..+..-|.+.++++|+++
T Consensus 120 ~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~ 150 (268)
T cd06273 120 AMIFGPTQGNDRARARRAGVRAALAEAGLEL 150 (268)
T ss_pred EEEeccccCCccHHHHHHHHHHHHHHcCCCC
Confidence 9997432 122333788888888553
No 138
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=66.18 E-value=1.1e+02 Score=28.04 Aligned_cols=160 Identities=17% Similarity=0.244 Sum_probs=76.4
Q ss_pred HHHHHHcCCcEEEE-eCCCch-hhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCc
Q 017159 159 RAFLEQAGARCIVM-PCHISH-AWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 159 ~~~L~~~Gad~IVI-aCNTAH-~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~ 217 (376)
.+.+.+.++|.|++ ++++.. ..++.+++ .++|++-+ ...+++.+.+.|. +
T Consensus 49 ~~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvv~i~~~~~~~~~~~V~~d~~~~g~~a~~~l~~~g~--------~ 119 (270)
T cd01545 49 RALLQRSRVDGVILTPPLSDNPELLDLLDE-AGVPYVRIAPGTPDPDSPCVRIDDRAAAREMTRHLIDLGH--------R 119 (270)
T ss_pred HHHHHHCCCCEEEEeCCCCCccHHHHHHHh-cCCCEEEEecCCCCCCCCeEEeccHHHHHHHHHHHHHCCC--------c
Confidence 34566789998865 454322 22444443 45666533 2334555666554 4
Q ss_pred eEEEeecchh---hc--hHHHHHHHHhcCCce----eecCccccccchHHHHHHH-hcC-ChH----HHHHHHHHHHHHH
Q 017159 218 RIGVLATDAT---LS--AGFYQEKLQNQGFEV----VLPDKATMEHVIIPTIEAL-NHR-DME----GARNLLRIGIQLL 282 (376)
Q Consensus 218 rVGlLaT~~T---~~--s~~Y~~~L~~~G~ev----v~p~~~~q~~~l~~~ie~l-k~G-~~~----~a~~~l~~~i~~L 282 (376)
+|++++.... .. ..-|++.++++|+.+ +.......+. -...++.+ ..+ +.+ ........+++.+
T Consensus 120 ~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~~~ 198 (270)
T cd01545 120 RIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDFTFES-GLEAAEALLALPDRPTAIFASNDDMAAGVLAVA 198 (270)
T ss_pred eEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhh-HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHH
Confidence 8999864221 11 222777888888765 2222211111 11112222 211 111 1112223334444
Q ss_pred hhCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 283 LVRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 283 ~~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
.+.| -|.-|+|+-..+..... .+....+--+...+++.+++.+...
T Consensus 199 ~~~g~~~p~~i~vig~d~~~~~~~~-~~~~~ti~~~~~~~g~~a~~~l~~~ 248 (270)
T cd01545 199 HRRGLRVPDDLSVVGFDDTPIATTI-WPPLTTVRQPIAEMARAAAELLIAR 248 (270)
T ss_pred HHcCCCCCCceEEEEECChhHHhcC-CCCceEeeCcHHHHHHHHHHHHHHH
Confidence 4443 36677888777653221 1111123345566777777777554
No 139
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.10 E-value=1.1e+02 Score=28.14 Aligned_cols=158 Identities=17% Similarity=0.187 Sum_probs=75.9
Q ss_pred HHHHHHcCCcEEEEe-CCC--ch---hhHHHHhccCCCCeeccH--------------------HHHHHHHHHhcCCCCc
Q 017159 159 RAFLEQAGARCIVMP-CHI--SH---AWHGDVSEGCSIPFLHVG--------------------ECVAKELKEAKLKPLE 212 (376)
Q Consensus 159 ~~~L~~~Gad~IVIa-CNT--AH---~~~d~L~~~~~vPvl~Iv--------------------eat~~~~~~~g~k~~~ 212 (376)
++.|.+.++|.|++. ++. .+ ..++++++ .++|++-+- ..+++.+.+.|.
T Consensus 48 i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~-~~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g~---- 122 (273)
T cd06292 48 VEDLLARGVRGVVFISSLHADTHADHSHYERLAE-RGLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVALGH---- 122 (273)
T ss_pred HHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHh-CCCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCC----
Confidence 455777899988774 322 12 12455533 355554431 234456666665
Q ss_pred CCCCceEEEeecchh-----hchHHHHHHHHhcCCce----eecCccccccchHHHHHHH-hcCChH----HHHHHHHHH
Q 017159 213 AGSGVRIGVLATDAT-----LSAGFYQEKLQNQGFEV----VLPDKATMEHVIIPTIEAL-NHRDME----GARNLLRIG 278 (376)
Q Consensus 213 ~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~ev----v~p~~~~q~~~l~~~ie~l-k~G~~~----~a~~~l~~~ 278 (376)
++|++++-... .+..-|.+.++++|++. +.......+. ....++.+ +.+ .+ ........+
T Consensus 123 ----~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~-~~ai~~~~d~~a~g~ 196 (273)
T cd06292 123 ----RRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARGMFSVEG-GQAAAVELLGSG-PTAIVAASDLMALGA 196 (273)
T ss_pred ----ceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheEeCCCCHHH-HHHHHHHHhcCC-CCEEEEcCcHHHHHH
Confidence 38998864321 12233777888888542 2221111110 11112222 222 11 111222334
Q ss_pred HHHHhhCC----CCEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHhc
Q 017159 279 IQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARSN 329 (376)
Q Consensus 279 i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~~ 329 (376)
++.|.+.| -|.-|.|+-+.++.. ...+. +..| =+...+++.+++.+...
T Consensus 197 ~~~l~~~g~~ip~di~ii~~d~~~~~~-~~~p~-l~tv~~~~~~~g~~a~~~l~~~ 250 (273)
T cd06292 197 IRAARRRGLRVPEDVSVVGYDDSALMA-FTDPP-LTTVRQPVEEMAAAAVDRLMAR 250 (273)
T ss_pred HHHHHHcCCCCCcceEEEeeCCchHHH-hcCCC-cceecCCHHHHHHHHHHHHHHH
Confidence 45555544 477788888777532 12222 2233 34556777777766543
No 140
>PRK15063 isocitrate lyase; Provisional
Probab=65.69 E-value=52 Score=34.22 Aligned_cols=161 Identities=17% Similarity=0.144 Sum_probs=81.3
Q ss_pred CCCcccccc-c---CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhc-h-----hhhcccc
Q 017159 72 SKSPDSLLN-Q---ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHAS-V-----HSLKSKT 141 (376)
Q Consensus 72 ~~~~~~~~~-~---~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s-~-----~~~~~~~ 141 (376)
..+++.+|. | .|+.|-+||---..+.++.+||.......|....|++|.-..+--...+.-| . +.+....
T Consensus 173 AGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r 252 (428)
T PRK15063 173 AGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDRPFITGER 252 (428)
T ss_pred cCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccccccccccccCCC
Confidence 456666765 3 5889999988889999999999987754444445677765543210000000 0 0000000
Q ss_pred ccCc--chHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCC--CeeccHHHHHHHHHHhcCCCCcCCCC
Q 017159 142 VQLD--HIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSI--PFLHVGECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 142 ~~~~--~~~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~v--Pvl~Iveat~~~~~~~g~k~~~~~~~ 216 (376)
.+.. .....+-+.+.+... ... |||+|-+.+.+.+.- +.++.+.++. |.- + ...+..|. -+
T Consensus 253 ~~eg~y~~~~Gld~AI~Ra~A-Ya~-GAD~iw~Et~~~d~ee~~~fa~~v~~~~P~~-~--------layn~sPs---fn 318 (428)
T PRK15063 253 TAEGFYRVKAGIEQAIARGLA-YAP-YADLIWCETSTPDLEEARRFAEAIHAKFPGK-L--------LAYNCSPS---FN 318 (428)
T ss_pred ccccccccccCHHHHHHHHHH-Hhc-CCCEEEeCCCCCCHHHHHHHHHhhcccCccc-e--------eecCCCCC---cc
Confidence 0000 000113333444333 344 999999998654432 4444444443 310 0 00122110 00
Q ss_pred ceEEEeecchhhchHHHHHHHHhcCCceeecCcc
Q 017159 217 VRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 217 ~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
=+-. | ++.+++ -|++.|++.|+..++....
T Consensus 319 W~~~-~-~~~~~~--~f~~eL~~~Gy~~~~~~la 348 (428)
T PRK15063 319 WKKN-L-DDATIA--KFQRELGAMGYKFQFITLA 348 (428)
T ss_pred cccc-c-CHHHHH--HHHHHHHHcCceEEEechH
Confidence 0001 1 344444 3889999999998866543
No 141
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.11 E-value=1.1e+02 Score=28.00 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=42.6
Q ss_pred HHHHHHcCCcEEEEeCCCch-hhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHISH-AWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH-~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+...++|.|++.....+ ..+.++.+ .++|++-+ +..+++.+.+.|.+ +
T Consensus 48 i~~~~~~~~dgiii~~~~~~~~~~~~~~~-~~~pvV~i~~~~~~~~~~~V~~d~~~~~~~~~~~L~~~G~~--------~ 118 (269)
T cd06293 48 LRWLDTNHVDGLIFVTNRPDDGALAKLIN-SYGNIVLVDEDVPGAKVPKVFCDNEQGGRLATRHLARAGHR--------R 118 (269)
T ss_pred HHHHHHCCCCEEEEeCCCCCHHHHHHHHh-cCCCEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCc--------e
Confidence 35577789999988643222 22333322 13343322 23456667766654 8
Q ss_pred EEEeecchhh-----chHHHHHHHHhcCCce
Q 017159 219 IGVLATDATL-----SAGFYQEKLQNQGFEV 244 (376)
Q Consensus 219 VGlLaT~~T~-----~s~~Y~~~L~~~G~ev 244 (376)
|++++..... +..-|.+.++++|+..
T Consensus 119 i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~ 149 (269)
T cd06293 119 IAFVGGPDALISARERYAGYREALAEAHIPE 149 (269)
T ss_pred EEEEecCcccccHHHHHHHHHHHHHHcCCCC
Confidence 9999643221 1223788888887653
No 142
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=63.82 E-value=14 Score=37.45 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh--HHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAW--HGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl 193 (376)
+-++.|+++|||.+=+++++.... +.+|++.+++|++
T Consensus 46 ~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlv 84 (360)
T PRK00366 46 AQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLV 84 (360)
T ss_pred HHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEE
Confidence 345669999999999999999887 8999999999986
No 143
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=63.60 E-value=1e+02 Score=29.86 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=17.3
Q ss_pred ceEEEeecchhhc---hHHHHHHHHh--cCCcee
Q 017159 217 VRIGVLATDATLS---AGFYQEKLQN--QGFEVV 245 (376)
Q Consensus 217 ~rVGlLaT~~T~~---s~~Y~~~L~~--~G~evv 245 (376)
+||+++..+...- ...+++.+++ .|++++
T Consensus 144 k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv 177 (342)
T cd06329 144 KKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIV 177 (342)
T ss_pred ceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEe
Confidence 5888887644221 1235567777 677665
No 144
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.50 E-value=1.2e+02 Score=27.68 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=78.5
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
++.+.+.++|.|++...........+ ..-++|++.+ ...+++.+.+.|. ++|
T Consensus 49 ~~~l~~~~~dgiii~~~~~~~~~~~~-~~~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~g~--------~~i 119 (269)
T cd06288 49 VEALLDHRVDGIIYATMYHREVTLPP-ELLSVPTVLLNCYDADGALPSVVPDEEQGGYDATRHLLAAGH--------RRI 119 (269)
T ss_pred HHHHHHcCCCEEEEecCCCChhHHHH-HhcCCCEEEEecccCCCCCCeEEEccHHHHHHHHHHHHHcCC--------ceE
Confidence 34567789998887654322221122 2224554422 3344556666554 389
Q ss_pred EEeecchhh-----chHHHHHHHHhcCCcee----ecCccccccchHHHHHHH-hcC-ChH----HHHHHHHHHHHHHhh
Q 017159 220 GVLATDATL-----SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEAL-NHR-DME----GARNLLRIGIQLLLV 284 (376)
Q Consensus 220 GlLaT~~T~-----~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~l-k~G-~~~----~a~~~l~~~i~~L~~ 284 (376)
++++.+... +..-|.+.++++|+++. .......+. ....+..+ ..+ +.+ ........+++.+.+
T Consensus 120 ~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~ 198 (269)
T cd06288 120 AFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADD-GYEAAAALLDLDDRPTAIFCGNDRMAMGAYQALLE 198 (269)
T ss_pred EEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHH-HHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHH
Confidence 999754321 22236778888886532 111111111 11112232 222 111 111222234445555
Q ss_pred CC----CCEEEECCCccccccCCCCCCCCeeeehH-HHHHHHHHHHHHhc
Q 017159 285 RA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPM-DALARSTVTWARSN 329 (376)
Q Consensus 285 ~g----aDaVILGCTElpll~~~~~~~~vpvIDp~-~~lA~a~v~~a~~~ 329 (376)
.| -|..|.|+-..+...+...+ ++..|+.. +.+++.+++.+.+.
T Consensus 199 ~g~~vp~di~v~g~d~~~~~~~~~~~-~~~ti~~~~~~~g~~a~~~l~~~ 247 (269)
T cd06288 199 RGLRIPQDVSVVGFDNQEIIAEHLRP-PLTTVALPHYEMGRWAVELLLDG 247 (269)
T ss_pred cCCCCcccceEEeeCCchhhhhccCC-CceeEecCHHHHHHHHHHHHHHH
Confidence 44 37788888877765423222 24555554 56777777776554
No 145
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=63.07 E-value=61 Score=29.10 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=47.6
Q ss_pred EEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHHH
Q 017159 85 IGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLEQ 164 (376)
Q Consensus 85 IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~~ 164 (376)
+||| ||..|-..+.++..+....-+-+ .++-+.|-...| +.+.++ ++..++
T Consensus 1 V~Ii--mGS~SD~~~~~~a~~~L~~~gi~-~dv~V~SaHRtp----------------------~~~~~~----~~~a~~ 51 (156)
T TIGR01162 1 VGII--MGSDSDLPTMKKAADILEEFGIP-YELRVVSAHRTP----------------------ELMLEY----AKEAEE 51 (156)
T ss_pred CEEE--ECcHhhHHHHHHHHHHHHHcCCC-eEEEEECcccCH----------------------HHHHHH----HHHHHH
Confidence 3566 77788888888888776543321 233333321111 333333 345667
Q ss_pred cCCcEEEEeCCCchhhHHHHhccCCCCeeccHH
Q 017159 165 AGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE 197 (376)
Q Consensus 165 ~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive 197 (376)
.|+++|+....-+-..---+...+..|||++--
T Consensus 52 ~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~ 84 (156)
T TIGR01162 52 RGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPV 84 (156)
T ss_pred CCCeEEEEeCCccchhHHHHHhccCCCEEEecC
Confidence 888765444443322345667778899998743
No 146
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=63.07 E-value=1.7e+02 Score=29.16 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=19.3
Q ss_pred ceEEEeecchhhc---hHHHHHHHHhcCCceee
Q 017159 217 VRIGVLATDATLS---AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 217 ~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~ 246 (376)
++|+++..+...- ...+.+.+++.|.+++.
T Consensus 162 k~va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~ 194 (369)
T PRK15404 162 KRIAVLHDKQQYGEGLARSVKDGLKKAGANVVF 194 (369)
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEE
Confidence 4888888764322 12356777888888763
No 147
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=63.02 E-value=1.5e+02 Score=29.10 Aligned_cols=66 Identities=9% Similarity=0.049 Sum_probs=38.2
Q ss_pred ceEEEeecchhhc---hHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 217 VRIGVLATDATLS---AGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 217 ~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
+||++++.+...- ...+.+.+++.|.+++.... + .. +. ....+...+.+++..++|+|+++
T Consensus 133 ~~v~~i~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~------~-----~~--~~---~~~d~s~~v~~l~~~~pd~V~~~ 196 (360)
T cd06357 133 KRVFLVGSNYIYPYESNRIMRDLLEQRGGEVLGERY------L-----PL--GA---SDEDFARIVEEIREAQPDFIFST 196 (360)
T ss_pred cEEEEECCCCcchHHHHHHHHHHHHHcCCEEEEEEE------e-----cC--CC---chhhHHHHHHHHHHcCCCEEEEe
Confidence 4888887654322 23578888888888763110 0 00 10 01123445556767788888888
Q ss_pred CCccc
Q 017159 294 SDEMQ 298 (376)
Q Consensus 294 CTElp 298 (376)
+..-.
T Consensus 197 ~~~~~ 201 (360)
T cd06357 197 LVGQS 201 (360)
T ss_pred CCCCC
Confidence 76644
No 148
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=62.64 E-value=15 Score=36.87 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh--HHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAW--HGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl 193 (376)
+.++.|+++|||.+=+++++.... +.+|++.+++|++
T Consensus 38 ~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlV 76 (346)
T TIGR00612 38 AQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLV 76 (346)
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEE
Confidence 345669999999999999998887 8999999999986
No 149
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=62.37 E-value=75 Score=31.12 Aligned_cols=85 Identities=12% Similarity=-0.032 Sum_probs=45.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
+.++||++.. .-...|+..+.+... ...+....+++++.. .+. +.. .+.+
T Consensus 24 ~~~~Ig~i~~---~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~--------------------~~~--~~~----~~~i 74 (330)
T PRK10355 24 KEVKIGMAID---DLRLERWQKDRDIFVKKAESLGAKVFVQSAN--------------------GNE--ETQ----MSQI 74 (330)
T ss_pred CCceEEEEec---CCCchHHHHHHHHHHHHHHHcCCEEEEECCC--------------------CCH--HHH----HHHH
Confidence 4679999972 123458888888764 232334455443310 011 222 2234
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc
Q 017159 160 AFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I 195 (376)
+.|.+.++|.|++.+.... .+++.+++ .++|++-+
T Consensus 75 ~~l~~~~vDGiIi~~~~~~~~~~~l~~~~~-~~iPvV~i 112 (330)
T PRK10355 75 ENMINRGVDVLVIIPYNGQVLSNVIKEAKQ-EGIKVLAY 112 (330)
T ss_pred HHHHHcCCCEEEEeCCChhhHHHHHHHHHH-CCCeEEEE
Confidence 5577789999988764322 33455432 24565533
No 150
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=62.21 E-value=14 Score=35.21 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 153 QNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 153 ~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
..+.+.+..|++.||-.+|+-|- .|+....+...++||-|+|.
T Consensus 185 ~~l~EtAmqLqk~Gc~svvlECv-P~~~A~~iTs~lsiPTIGIG 227 (306)
T KOG2949|consen 185 VKLVETAMQLQKAGCFSVVLECV-PPPVAAAITSALSIPTIGIG 227 (306)
T ss_pred HHHHHHHHHHHhcccceEeeecC-ChHHHHHHHhccCCcceeec
Confidence 34566677899999999999997 69999999999999999974
No 151
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=62.07 E-value=26 Score=39.20 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCcEEEEeCC--CchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcCC
Q 017159 166 GARCIVMPCH--ISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQGF 242 (376)
Q Consensus 166 Gad~IVIaCN--TAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G~ 242 (376)
++|+||+.-- -.|+.+.+.++ .++|+++=+|...+..+. .+.|||-||.| |--+.+....|+..|.
T Consensus 63 ~~d~vV~SpgI~~~~p~~~~a~~-~gi~v~~~~el~~~~~~~----------~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 63 EDAVVVYSSSISKDNVEYLSAKS-RGNRLVHRAELLAELMQE----------QISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCEEEECCCcCCCCHHHHHHHH-CCCcEEeHHHHHHHHHcC----------CCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 6888874322 12566666554 589999988876544321 13799999988 2334456777777775
Q ss_pred c
Q 017159 243 E 243 (376)
Q Consensus 243 e 243 (376)
.
T Consensus 132 ~ 132 (809)
T PRK14573 132 D 132 (809)
T ss_pred C
Confidence 4
No 152
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=62.04 E-value=86 Score=30.16 Aligned_cols=123 Identities=12% Similarity=0.116 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCcEE-EEeCCCch-------hhHHHHhccCCCCe-----eccHHHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 157 HKRAFLEQAGARCI-VMPCHISH-------AWHGDVSEGCSIPF-----LHVGECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 157 ~~~~~L~~~Gad~I-VIaCNTAH-------~~~d~L~~~~~vPv-----l~Iveat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
+.++...+.||+.+ ++==+.|+ ..+.++.+.+++|+ |.- ...++.+...|.+ | -++|
T Consensus 35 ~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs-~~~v~~ll~~G~~--------r-ViiG 104 (241)
T COG0106 35 EVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRS-LEDVEALLDAGVA--------R-VIIG 104 (241)
T ss_pred HHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCC-HHHHHHHHHCCCC--------E-EEEe
Confidence 34456778899988 55555565 45777778887775 232 3455667777763 4 4699
Q ss_pred cchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccc
Q 017159 224 TDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQ 298 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElp 298 (376)
|.+--...+.++.++++| +-++.+-+++.... ++ .|-.+.+.-.+.+.++++.+.|+..+| ||++.
T Consensus 105 t~av~~p~~v~~~~~~~g-~rivv~lD~r~g~v-----av-~GW~e~s~~~~~~l~~~~~~~g~~~ii--~TdI~ 170 (241)
T COG0106 105 TAAVKNPDLVKELCEEYG-DRIVVALDARDGKV-----AV-SGWQEDSGVELEELAKRLEEVGLAHIL--YTDIS 170 (241)
T ss_pred cceecCHHHHHHHHHHcC-CcEEEEEEccCCcc-----cc-ccccccccCCHHHHHHHHHhcCCCeEE--EEecc
Confidence 988888888999999999 55555555554211 11 132233444567777888889999887 67766
No 153
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=61.81 E-value=45 Score=32.61 Aligned_cols=105 Identities=12% Similarity=0.141 Sum_probs=61.2
Q ss_pred cCCeEEEEc-CCChHHHHHHHHHHHHHhhhCC-CCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 81 QANTIGIIG-GVSVSSTLNFLGKLVWYSAKDA-EECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 81 ~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~d-q~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
++++|+|+. |-|.- ++.|.+....+. ...+..|+.|+|+.......++.|...-.....+ +++.- .+.
T Consensus 83 ~~~ki~vl~Sg~g~n-----l~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~--~~~~e---~~~ 152 (280)
T TIGR00655 83 KLKRVAILVSKEDHC-----LGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDN--RVEHE---KRQ 152 (280)
T ss_pred CCcEEEEEEcCCChh-----HHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCCCcc--hhhhH---HHH
Confidence 567899997 66644 777777766543 2467788889888755433334443211110111 12211 223
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
.+.|++.++|+||++-. .+..-+.+-+.+.-.++|+=
T Consensus 153 ~~~l~~~~~Dlivlagy-m~il~~~~l~~~~~~iINiH 189 (280)
T TIGR00655 153 LELLKQYQVDLVVLAKY-MQILSPDFVKRYPNKIINIH 189 (280)
T ss_pred HHHHHHhCCCEEEEeCc-hhhCCHHHHhhccCCEEEec
Confidence 45678899999999976 45554555555555666653
No 154
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=61.80 E-value=88 Score=28.83 Aligned_cols=80 Identities=18% Similarity=0.094 Sum_probs=44.6
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeeccH-------------------HHHHHHHHHhcCCCCcCCCC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHVG-------------------ECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~Iv-------------------eat~~~~~~~g~k~~~~~~~ 216 (376)
++.+...++|.|++.....+ ..++.+++ .++|++.+- ..+++++.+.. ...
T Consensus 53 ~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~-~~iPvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~------~g~ 125 (272)
T cd06300 53 IRNLIAQGVDAIIINPASPTALNPVIEEACE-AGIPVVSFDGTVTTPCAYNVNEDQAEFGKQGAEWLVKEL------GGK 125 (272)
T ss_pred HHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCeEEEEecCCCCCceeEecCCHHHHHHHHHHHHHHHc------CCC
Confidence 34466679999988654322 23455544 366666431 23445555541 123
Q ss_pred ceEEEeecch-----hhchHHHHHHHHhcC-Ccee
Q 017159 217 VRIGVLATDA-----TLSAGFYQEKLQNQG-FEVV 245 (376)
Q Consensus 217 ~rVGlLaT~~-----T~~s~~Y~~~L~~~G-~evv 245 (376)
++|++++... ..+..-|++.++++| +++.
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~ 160 (272)
T cd06300 126 GNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIV 160 (272)
T ss_pred ceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEE
Confidence 4899996422 122233788888887 7654
No 155
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=61.61 E-value=93 Score=30.93 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCch
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHISH 178 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTAH 178 (376)
+.+.+.+.++.+.++|||.|.|+=-++.
T Consensus 184 ~t~~~~~~~~~~~eaGad~i~i~d~~~~ 211 (346)
T PRK00115 184 LADATIAYLNAQIEAGAQAVQIFDSWAG 211 (346)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCccc
Confidence 4444555556566789999987654443
No 156
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=60.87 E-value=1.4e+02 Score=27.62 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=77.0
Q ss_pred HHHHcCCcEEEEeCCCchh-hHHHHhccCCCCeecc-----------------HHHHHHHHHHhcCCCCcCCCCceEEEe
Q 017159 161 FLEQAGARCIVMPCHISHA-WHGDVSEGCSIPFLHV-----------------GECVAKELKEAKLKPLEAGSGVRIGVL 222 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~I-----------------veat~~~~~~~g~k~~~~~~~~rVGlL 222 (376)
.+...++|.|++.+..... +++.+++ .++|++-+ ...+++++.+. + ++++++
T Consensus 50 ~l~~~~vdgvi~~~~~~~~~~~~~l~~-~~iPvv~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~-~--------~~i~~i 119 (269)
T cd06297 50 TTLAYLTDGLLLASYDLTERLAERRLP-TERPVVLVDAENPRFDSFYLDNRLGGRLAGAYLADF-P--------GRIGAI 119 (269)
T ss_pred HHHhcCCCEEEEecCccChHHHHHHhh-cCCCEEEEccCCCCCCEEEECcHHHHHHHHHHHHHh-C--------CceEEE
Confidence 3667789988887754333 3455544 36676533 22345555554 4 389988
Q ss_pred ecchh-----------hchHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcCC-hHH----HHHHHHHHHHH
Q 017159 223 ATDAT-----------LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHRD-MEG----ARNLLRIGIQL 281 (376)
Q Consensus 223 aT~~T-----------~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G~-~~~----a~~~l~~~i~~ 281 (376)
+.... .+..-|++.++++|+++. .......+. ....+.. ++.+. .+. .......+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~ 198 (269)
T cd06297 120 TVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDLLAITDHSEEG-GRLAMRHLLEKASPPLAVFASADQQALGALQE 198 (269)
T ss_pred eCccccccccccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhh-HHHHHHHHHcCCCCCcEEEEcCcHHHHHHHHH
Confidence 64321 112337888888887642 111111111 1112222 22221 111 11233344555
Q ss_pred HhhCCC----CEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 282 LLVRAV----NAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 282 L~~~ga----DaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
+.+.|. |.-|.|.-..+..... +. -.+--+...+.+.+++.+...
T Consensus 199 l~~~g~~vP~di~vvg~d~~~~~~~~--~l-ttv~~~~~~~g~~av~~l~~~ 247 (269)
T cd06297 199 AVELGLTVGEDVRVVGFDDHPFAREA--GL-STLAQPVEAMGARAAQLLLER 247 (269)
T ss_pred HHHcCCCCCCceEEEEECCchhhccC--Cc-eeeecCHHHHHHHHHHHHHHH
Confidence 555554 7778888777654322 11 123334466666666666543
No 157
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=60.80 E-value=19 Score=37.35 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEe--CCCchhh----HHHHhccCCCCeeccHH
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMP--CHISHAW----HGDVSEGCSIPFLHVGE 197 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIa--CNTAH~~----~d~L~~~~~vPvl~Ive 197 (376)
...+.-.++++.|.+.|+|++++. |-|-|-. ..+|.+ .+||++||.-
T Consensus 320 ~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~-~GIPvV~i~~ 372 (431)
T TIGR01917 320 NSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIER-AGIPVVHICT 372 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHH-cCCCEEEEee
Confidence 344456677888999999999886 8888875 455554 6899999853
No 158
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.37 E-value=1.1e+02 Score=31.57 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=46.2
Q ss_pred cCCcEEEEeCCC--chhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcC
Q 017159 165 AGARCIVMPCHI--SHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQG 241 (376)
Q Consensus 165 ~Gad~IVIaCNT--AH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G 241 (376)
.++|++|++..- .|+++...+ ..++|+++=.+......... .+.+.|||-||.| |--+.+....|+..|
T Consensus 77 ~~~D~Vv~s~Gi~~~~~~~~~a~-~~gi~v~~~~e~~~~~~~~~-------~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 77 EDTDLVVTSPGWRPDAPLLAAAA-DAGIPVWGEVELAWRLRDPD-------RPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred CCCCEEEECCCcCCCCHHHHHHH-HCCCeecchHHHHHHhhhcc-------CCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 468888877642 234444444 35899988666433322110 0123799999988 334556778888888
Q ss_pred CceeecC
Q 017159 242 FEVVLPD 248 (376)
Q Consensus 242 ~evv~p~ 248 (376)
..+....
T Consensus 149 ~~~~~~G 155 (480)
T PRK01438 149 LRAAAVG 155 (480)
T ss_pred CCeEEEC
Confidence 7766543
No 159
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=60.36 E-value=90 Score=31.43 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=38.3
Q ss_pred ceEEEeecchhhc---hHHHHHHHHhcCCceeecCc---c-ccccchHHHHHHHhcCChH-----HHHHHHHHHHHHHhh
Q 017159 217 VRIGVLATDATLS---AGFYQEKLQNQGFEVVLPDK---A-TMEHVIIPTIEALNHRDME-----GARNLLRIGIQLLLV 284 (376)
Q Consensus 217 ~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~p~~---~-~q~~~l~~~ie~lk~G~~~-----~a~~~l~~~i~~L~~ 284 (376)
++|+++.-....- ...+++.+++.|++++.-.. . ..+..+.+.+..++..+.+ ...+....+++.+.+
T Consensus 177 k~vaii~~~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~~~~~~il~qa~~ 256 (410)
T cd06363 177 NWVAFLGSDDEYGRDGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASRQPAEAFFNSVIQ 256 (410)
T ss_pred cEEEEEEeCChhHHHHHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHh
Confidence 4899986433322 23466778888887753211 0 0111144456666643211 112223344445555
Q ss_pred CCC-CEEEECCCc
Q 017159 285 RAV-NAVIIGSDE 296 (376)
Q Consensus 285 ~ga-DaVILGCTE 296 (376)
.|. ..+++|+..
T Consensus 257 ~g~~~~~~i~~~~ 269 (410)
T cd06363 257 QNLTGKVWIASEA 269 (410)
T ss_pred cCCCCCEEEEeCc
Confidence 555 345556543
No 160
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=60.03 E-value=36 Score=34.42 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH---HHHHhcCCceeecC
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ---EKLQNQGFEVVLPD 248 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~---~~L~~~G~evv~p~ 248 (376)
++...+.++..|. +|+.|++.+...+.++++ +.|++.|+++.+.+
T Consensus 18 l~~l~~~~~~~g~--------~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~ 65 (382)
T PRK10624 18 IGALTDEVKRRGF--------KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYD 65 (382)
T ss_pred HHHHHHHHHhcCC--------CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeC
Confidence 4555555665554 388888777766666665 45677788776554
No 161
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=59.82 E-value=19 Score=37.27 Aligned_cols=47 Identities=15% Similarity=0.333 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEe--CCCchhh----HHHHhccCCCCeeccHH
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMP--CHISHAW----HGDVSEGCSIPFLHVGE 197 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIa--CNTAH~~----~d~L~~~~~vPvl~Ive 197 (376)
...+.-.++++.|.+.|+|++++. |-|-|-. ..+|.+ .+||++||.-
T Consensus 320 ~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~-~GiPvv~~~~ 372 (431)
T TIGR01918 320 ESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIER-AGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHH-cCCCEEEEee
Confidence 344566777888999999999886 8888875 455554 6899999854
No 162
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=59.63 E-value=67 Score=30.85 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhh-----HHHHhccCCCCeec----cHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAW-----HGDVSEGCSIPFLH----VGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~-----~d~L~~~~~vPvl~----Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
.+.++..++.||++|-+.|-..+.- +..+++.+++||+. +-+.-+..+...|.. -|.|+++.-
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD--------~VlLi~~~l 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGAD--------AILLIVAAL 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCC--------EEEEEeccC
Confidence 4455677889999998877653321 56677788999883 112235556666654 678888762
Q ss_pred hh-chHHHHHHHHhcCCceee
Q 017159 227 TL-SAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 227 T~-~s~~Y~~~L~~~G~evv~ 246 (376)
.. .-.-+-+.....|.++++
T Consensus 145 ~~~~l~~li~~a~~lGl~~lv 165 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLV 165 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEE
Confidence 21 111122334455776653
No 163
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=59.30 E-value=32 Score=30.29 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=52.5
Q ss_pred CceEEEeecchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChH-HHHHHHHHHHHHHhhCCCCEEEECC
Q 017159 216 GVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDME-GARNLLRIGIQLLLVRAVNAVIIGS 294 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~-~a~~~l~~~i~~L~~~gaDaVILGC 294 (376)
+|||-++|-+.-+-..-.+..++..|-+++....+|--- -.+|.++ +.+..++++.+++-..+. .|||||
T Consensus 5 gkKviiiGdRDGiPgpAie~c~~~~gaevvfs~TeCFVc--------taagaMDLEnQ~rvk~~aEk~g~enl-vVvlG~ 75 (150)
T PF04723_consen 5 GKKVIIIGDRDGIPGPAIEECVKTAGAEVVFSSTECFVC--------TAAGAMDLENQQRVKDLAEKYGAENL-VVVLGA 75 (150)
T ss_pred CcEEEEEecCCCCCcHHHHHHHHhcCceEEEEeeeEEEe--------cccccccHHHHHHHHHHHHhcCCccE-EEEecC
Confidence 469999999999998899999999999999877665421 1125442 456667777666643333 688999
Q ss_pred Ccc
Q 017159 295 DEM 297 (376)
Q Consensus 295 TEl 297 (376)
.|=
T Consensus 76 aea 78 (150)
T PF04723_consen 76 AEA 78 (150)
T ss_pred CCh
Confidence 764
No 164
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=59.12 E-value=1.2e+02 Score=29.56 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=17.0
Q ss_pred ceEEEeecchh---hchHHHHHHHHhcCCceee
Q 017159 217 VRIGVLATDAT---LSAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 217 ~rVGlLaT~~T---~~s~~Y~~~L~~~G~evv~ 246 (376)
++|+++....- -....+++.+++.|++++.
T Consensus 145 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~ 177 (362)
T cd06343 145 AKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVA 177 (362)
T ss_pred ceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEE
Confidence 47777765431 1123356667777776653
No 165
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=59.00 E-value=1.7e+02 Score=28.10 Aligned_cols=20 Identities=5% Similarity=0.169 Sum_probs=14.1
Q ss_pred HHHHHHhhCCCCEEEECCCc
Q 017159 277 IGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 277 ~~i~~L~~~gaDaVILGCTE 296 (376)
..+.++.+.++|+|++++..
T Consensus 182 ~~v~~i~~~~~d~v~~~~~~ 201 (332)
T cd06344 182 TAVSQAINNGATVLVLFPDT 201 (332)
T ss_pred HHHHHHHhcCCCEEEEeCCh
Confidence 34455666788999988865
No 166
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=58.84 E-value=1.2e+02 Score=31.92 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=44.9
Q ss_pred cCCcEEEEeCCC--chhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchh-hchHHHHHHHHhcC
Q 017159 165 AGARCIVMPCHI--SHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDAT-LSAGFYQEKLQNQG 241 (376)
Q Consensus 165 ~Gad~IVIaCNT--AH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T-~~s~~Y~~~L~~~G 241 (376)
..+|.+|..=-- .|+.+++.++ .++||++=++-..+.. +. .+-|||-||+|- =.+.+....|++.|
T Consensus 68 ~~~d~vV~SPGi~~~~p~v~~A~~-~gi~i~~dieL~~r~~---~~-------~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 68 AEFDLVVKSPGIPPTHPLVEAAKA-AGIEIIGDIELFYRLS---GE-------APIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred ccCCEEEECCCCCCCCHHHHHHHH-cCCcEEeHHHHHHHhc---CC-------CCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 467877753221 2565555443 5899999887665433 11 137999999882 22345677788888
Q ss_pred Cceeec
Q 017159 242 FEVVLP 247 (376)
Q Consensus 242 ~evv~p 247 (376)
.++.+-
T Consensus 137 ~~~~lg 142 (448)
T COG0771 137 LDALLG 142 (448)
T ss_pred CCceec
Confidence 866543
No 167
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=58.84 E-value=42 Score=33.15 Aligned_cols=88 Identities=11% Similarity=0.171 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH-------HHH--HHHH-hcCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC-------VAK--ELKE-AKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea-------t~~--~~~~-~g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++.|... +|+||+=.. .|..++++.+..++||||..+. .+. .+.+ .|. -.+.+|+++|-
T Consensus 88 l~Dt~~~l~~~-~D~iv~R~~-~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~-----l~gl~i~~vGd 160 (304)
T PRK00779 88 IEDTARVLSRY-VDAIMIRTF-EHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRGS-----LKGLKVAWVGD 160 (304)
T ss_pred HHHHHHHHHHh-CCEEEEcCC-ChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHHHHhCC-----cCCcEEEEEeC
Confidence 55566778887 999999987 4777899999999999998542 111 1222 221 23468999997
Q ss_pred c-hhhchHHHHHHHHhcCCceeecCccc
Q 017159 225 D-ATLSAGFYQEKLQNQGFEVVLPDKAT 251 (376)
Q Consensus 225 ~-~T~~s~~Y~~~L~~~G~evv~p~~~~ 251 (376)
. .|..+ .-..+...|.++.+..++.
T Consensus 161 ~~~v~~S--l~~~l~~~g~~v~~~~P~~ 186 (304)
T PRK00779 161 GNNVANS--LLLAAALLGFDLRVATPKG 186 (304)
T ss_pred CCccHHH--HHHHHHHcCCEEEEECCcc
Confidence 2 23333 4456777899998876654
No 168
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.83 E-value=1.5e+02 Score=27.15 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=75.3
Q ss_pred HHHHHHcCCcEEEEe-CCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMP-CHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIa-CNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+.+.++|.+++. |+.....+..+++ ++|++-+ ...+++++.+.|. ++
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~~~~~~~~--~iPvV~i~~~~~~~~~~~V~~d~~~a~~~~~~~l~~~g~--------~~ 117 (265)
T cd06290 48 LELLKSRRVDALILLGGDLPEEEILALAE--EIPVLAVGRRVPGPGAASIAVDNFQGGYLATQHLIDLGH--------RR 117 (265)
T ss_pred HHHHHHCCCCEEEEeCCCCChHHHHHHhc--CCCEEEECCCcCCCCCCEEEECcHHHHHHHHHHHHHCCC--------Ce
Confidence 355778899988765 4433333445543 5665533 2334555666554 38
Q ss_pred EEEeecchh-----hchHHHHHHHHhcCCcee----ecCccccccchHHHHHHH-hcCC-hH----HHHHHHHHHHHHHh
Q 017159 219 IGVLATDAT-----LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEAL-NHRD-ME----GARNLLRIGIQLLL 283 (376)
Q Consensus 219 VGlLaT~~T-----~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~l-k~G~-~~----~a~~~l~~~i~~L~ 283 (376)
|++++.... -+..-|.+.+++.|+++. +......+. ....++.+ +.+. ++ ........+++.+.
T Consensus 118 i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~aii~~~~~~a~~~~~~l~ 196 (265)
T cd06290 118 IAHITGPRGHIDARDRLAGYRKALEEAGLEVQPDLIVQGDFEEES-GLEAVEELLQRGPDFTAIFAANDQTAYGARLALY 196 (265)
T ss_pred EEEEeCccccchhhHHHHHHHHHHHHcCCCCCHHHEEecCCCHHH-HHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 999965421 112236777887777542 121111111 11223332 2221 11 11122233445555
Q ss_pred hCCC----CEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 284 VRAV----NAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 284 ~~ga----DaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
+.|. |.-|.|+-..+...- ..+ .+..|+ ....+++.+++.+..
T Consensus 197 ~~g~~ip~di~vi~~d~~~~~~~-~~p-~ltti~~~~~~~g~~a~~~l~~ 244 (265)
T cd06290 197 RRGLRVPEDVSLIGFDDLPLSAY-TTP-PLTTVRQPIEEMGQIAARALLA 244 (265)
T ss_pred HcCCCCCcceEEeeecCchHHhh-cCC-CCceecCchHHHHHHHHHHHHH
Confidence 5553 667777776664321 111 123333 355666766666543
No 169
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=58.81 E-value=68 Score=32.11 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-.+.++|||+|+ |+.-+.-- +.+.-+++-..|+. .|+||+=.+-.
T Consensus 143 D~Tl~~Lak~Al~~A~AGADiVA-PSdMMDGr---------------V~aIR~aLd~~g~~--------~v~ImSYsaKy 198 (324)
T PF00490_consen 143 DETLERLAKQALSHAEAGADIVA-PSDMMDGR---------------VGAIREALDEAGFS--------DVPIMSYSAKY 198 (324)
T ss_dssp HHHHHHHHHHHHHHHHHT-SEEE-E-S--TTH---------------HHHHHHHHHHTTCT--------TSEEEEEEEEB
T ss_pred HHHHHHHHHHHHHHHHhCCCeec-cccccCCH---------------HHHHHHHHHhCCCC--------CccEEechHHH
Confidence 67788888888899999999654 55544322 33444455666764 78899887778
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-+..|-....-+....+ + ++...++.++++...+ ++|||.|+.
T Consensus 199 aS~fYGPFRdAa~Sap~fgDrktYQ--m----------dp~N~~EAlre~~~D~-~EGAD~lMV 249 (324)
T PF00490_consen 199 ASAFYGPFRDAAGSAPKFGDRKTYQ--M----------DPANRREALREAELDI-EEGADILMV 249 (324)
T ss_dssp -SSTGHHHHHHHT-HHSSSTSTTTS--B-----------TT-HHHHHHHHHHHH-HTT-SEEEE
T ss_pred hhhhhHhHHHHhcCCccccCccccc--C----------CCccHHHHHHHhhhhH-hhCCCEEEe
Confidence 8889887655555433222222211 1 1112456677766555 579997765
No 170
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.59 E-value=1.5e+02 Score=26.98 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=72.4
Q ss_pred HHHcCCcEEEEeC-CCchhhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 162 LEQAGARCIVMPC-HISHAWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 162 L~~~Gad~IVIaC-NTAH~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~~rVG 220 (376)
+.+.++|.|++.. ......++.+.+ .++|++-+ ...+++++.+.|. ++|+
T Consensus 56 ~~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~i~ 126 (270)
T cd06294 56 IQQKRVDGFILLYSREDDPIIDYLKE-EKFPFVVIGKPEDDKENITYVDNDNIQAGYDATEYLIKLGH--------KKIA 126 (270)
T ss_pred HHHcCcCEEEEecCcCCcHHHHHHHh-cCCCEEEECCCCCCCCCCCeEEECcHHHHHHHHHHHHHcCC--------ccEE
Confidence 4456799887753 222234555543 24554333 2234555655554 4899
Q ss_pred Eeecchhh-----chHHHHHHHHhcCCc----eeecCccccccchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHhhC
Q 017159 221 VLATDATL-----SAGFYQEKLQNQGFE----VVLPDKATMEHVIIPTIEA-LNHRD-MEG----ARNLLRIGIQLLLVR 285 (376)
Q Consensus 221 lLaT~~T~-----~s~~Y~~~L~~~G~e----vv~p~~~~q~~~l~~~ie~-lk~G~-~~~----a~~~l~~~i~~L~~~ 285 (376)
+++..... +..-|.+.++++|++ .+.......+. ....++. ++.+. ++. .......+++.+.+.
T Consensus 127 ~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~ 205 (270)
T cd06294 127 FVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEG-GYKALKKLLEQHPRPTAIVATDDLLALGVLKVLNEL 205 (270)
T ss_pred EecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHH-HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHc
Confidence 99754321 122367788888753 22222211111 1122323 22221 211 122344455666666
Q ss_pred CC----CEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 286 AV----NAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 286 ga----DaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
|. |..|.|....+... ...+ .+..|+ +...+++.+++.+.+.
T Consensus 206 g~~iP~dv~vig~d~~~~~~-~~~p-~l~~i~~~~~~~g~~a~~~l~~~ 252 (270)
T cd06294 206 GLKVPEDLSIIGFNNSILSE-LAHP-PLTSVDINPRELGYEAAELLIDL 252 (270)
T ss_pred CCCCCcceEEEeeCChhhhh-ccCC-CceEeccCHHHHHHHHHHHHHHH
Confidence 64 66677766655421 1111 122232 2345566666665543
No 171
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=57.44 E-value=26 Score=33.15 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=35.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhh----------HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 159 RAFLEQAGARCIVMPCHISHAW----------HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++.|..+|.|++-++-| |.+ ++.|+ +.+++.++.-.-..+ +.+--+ -...+.|||+++-....
T Consensus 68 ~~~L~~~G~d~vslANN--H~~D~G~~gl~~Tl~~L~-~~gi~~~Gag~~~~~-a~~p~i---~~~~g~kia~l~~t~~~ 140 (250)
T PF09587_consen 68 LDALKDAGFDVVSLANN--HIFDYGEEGLLDTLEALD-KAGIPYVGAGRNLEE-ARRPAI---IEVNGVKIAFLGYTDGE 140 (250)
T ss_pred HHHHHHcCCCEEEecCC--CCccccHHHHHHHHHHHH-HCCCcEeECcCChHH-hcCeEE---EEECCEEEEEEEEEcCC
Confidence 45678899999999888 543 22222 457888874322111 111000 01234689999986554
No 172
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=56.28 E-value=2e+02 Score=27.87 Aligned_cols=159 Identities=15% Similarity=0.194 Sum_probs=77.1
Q ss_pred HHHHHcCCcEEEEeCC-CchhhHHHHhccCCCCee--------------cc-----HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPCH-ISHAWHGDVSEGCSIPFL--------------HV-----GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCN-TAH~~~d~L~~~~~vPvl--------------~I-----veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.|++... .....+..+.+..+ |++ ++ ...+++++...|++ +|
T Consensus 109 ~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~p-~vV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I 179 (346)
T PRK10401 109 EVLIRQRCNALIVHSKALSDDELAQFMDQIP-GMVLINRVVPGYAHRCVCLDNVSGARMATRMLLNNGHQ--------RI 179 (346)
T ss_pred HHHHhcCCCEEEEeCCCCChHHHHHHHhcCC-CEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------eE
Confidence 4466788998887642 12223333333221 122 11 23456667776654 99
Q ss_pred EEeecchhh-----chHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHhh
Q 017159 220 GVLATDATL-----SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLLLV 284 (376)
Q Consensus 220 GlLaT~~T~-----~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L~~ 284 (376)
++++..... +..-|.+.++++|+.+. .......+. -...++. ++.+ .++. .......+++.+.+
T Consensus 180 ~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~ 258 (346)
T PRK10401 180 GYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTGTPDMQG-GEAAMVELLGRNLQLTAVFAYNDNMAAGALTALKD 258 (346)
T ss_pred EEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecCCCChHH-HHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHH
Confidence 999653321 12338888999987532 111111110 1111222 2222 1111 11222344555655
Q ss_pred CCC----CEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 285 RAV----NAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 285 ~ga----DaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
.|. |.-|.|+...++..- ..+..-.+-=+...+++.+++.+...
T Consensus 259 ~G~~vP~disvigfD~~~~~~~-~~p~lttv~~~~~~~g~~A~~~l~~~ 306 (346)
T PRK10401 259 NGIAIPLHLSIIGFDDIPIARY-TDPQLTTVRYPIASMAKLATELALQG 306 (346)
T ss_pred cCCCCCCceEEEEeCCchHHhc-CCCCCceeecCHHHHHHHHHHHHHHH
Confidence 554 778889888775421 11111122234566777777776553
No 173
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=56.23 E-value=1.8e+02 Score=28.08 Aligned_cols=22 Identities=27% Similarity=0.119 Sum_probs=15.4
Q ss_pred HHHHHHHHhhCCCCEEEECCCc
Q 017159 275 LRIGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 275 l~~~i~~L~~~gaDaVILGCTE 296 (376)
+...+.++...++|+|++.++.
T Consensus 179 ~~~~v~~l~~~~~d~v~~~~~~ 200 (340)
T cd06349 179 FRPTITRLRDANPDAIILISYY 200 (340)
T ss_pred HHHHHHHHHhcCCCEEEEcccc
Confidence 3445556667788888888864
No 174
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=56.17 E-value=63 Score=30.67 Aligned_cols=30 Identities=7% Similarity=0.270 Sum_probs=21.8
Q ss_pred cccCCeEEEEcCCChHHHHHHHHHHHHHhh
Q 017159 79 LNQANTIGIIGGVSVSSTLNFLGKLVWYSA 108 (376)
Q Consensus 79 ~~~~k~IGIIGGmGp~AT~~f~~kI~~~~~ 108 (376)
+.+..+||+|||+-...+..|..-..+...
T Consensus 117 ~t~t~kVG~I~g~~~~~~~~~~~gF~~G~~ 146 (258)
T cd06353 117 MTKTNKVGYVAAFPIPEVVRGINAFALGAR 146 (258)
T ss_pred hhcCCcEEEEcCcccHHHHHHHHHHHHHHH
Confidence 345689999999987777676665555443
No 175
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.03 E-value=1.3e+02 Score=31.22 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=45.3
Q ss_pred CCcEEEEeCC--CchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcCC
Q 017159 166 GARCIVMPCH--ISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQGF 242 (376)
Q Consensus 166 Gad~IVIaCN--TAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G~ 242 (376)
++|+||..-. -.|+++.+.++ .++|+++=++..........+. .+.+.|||-||.| |--+.+....|+..|.
T Consensus 74 ~~d~vV~Spgi~~~~p~~~~a~~-~gi~v~~~~el~~~~~~~~~~~----~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~ 148 (473)
T PRK00141 74 SFSLVVTSPGWRPDSPLLVDAQS-QGLEVIGDVELAWRLDQAGVFG----EPRTWLAVTGTNGKTTTTAMLAAMMQEGGF 148 (473)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHH-CCCceeeHHHHHHHhhhhhccC----CCCCEEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence 6788775432 23566666654 5899999777432221111110 1124899999988 3444566777888787
Q ss_pred ceee
Q 017159 243 EVVL 246 (376)
Q Consensus 243 evv~ 246 (376)
.+..
T Consensus 149 ~~~~ 152 (473)
T PRK00141 149 AAQA 152 (473)
T ss_pred cEEE
Confidence 6653
No 176
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=55.87 E-value=1.6e+02 Score=26.84 Aligned_cols=158 Identities=13% Similarity=0.051 Sum_probs=75.2
Q ss_pred HHHHHHcCCcEEEEe-CCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMP-CHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIa-CNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|...++|.|++. ++.....+.++++ -++|++-+ ...+++++.+.|. ++
T Consensus 48 i~~l~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~--------~~ 118 (264)
T cd06274 48 VETLIARQVDALIVAGSLPPDDPYYLCQK-AGLPVVALDRPGDPSRFPSVVSDNRDGAAELTRELLAAPP--------EE 118 (264)
T ss_pred HHHHHHcCCCEEEEcCCCCchHHHHHHHh-cCCCEEEecCccCCCCCCEEEEccHHHHHHHHHHHHHCCC--------Cc
Confidence 345677899987654 4432222445443 34554333 2234556666554 48
Q ss_pred EEEeecchh-----hchHHHHHHHHhcCCce--e--ecCccccccchHHHHHH-HhcC-C-hHH----HHHHHHHHHHHH
Q 017159 219 IGVLATDAT-----LSAGFYQEKLQNQGFEV--V--LPDKATMEHVIIPTIEA-LNHR-D-MEG----ARNLLRIGIQLL 282 (376)
Q Consensus 219 VGlLaT~~T-----~~s~~Y~~~L~~~G~ev--v--~p~~~~q~~~l~~~ie~-lk~G-~-~~~----a~~~l~~~i~~L 282 (376)
|++++.+.. -+..-|.+.++++|+++ . .......+. -...+++ +.+. . .+. .......+++.+
T Consensus 119 i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ai~~~~d~~A~g~~~al 197 (264)
T cd06274 119 VLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEGYSPES-GYQLMAELLARLGRLPRALFTTSYTLLEGVLRFL 197 (264)
T ss_pred EEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCCCChHH-HHHHHHHHHccCCCCCcEEEEcChHHHHHHHHHH
Confidence 999965432 12233788888887542 1 111111111 1111222 3332 1 111 112223344555
Q ss_pred hhCCC----CEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHh
Q 017159 283 LVRAV----NAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 283 ~~~ga----DaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
.+.|. |..|.|+...+... ...+ .+..| =+...+++.+++.+..
T Consensus 198 ~~~g~~ip~dv~v~g~d~~~~~~-~~~~-~ltti~~~~~~~g~~a~~~l~~ 246 (264)
T cd06274 198 RERPGLAPSDLRIATFDDHPLLD-FLPF-PVHSVPQDHEALAEAAFELALA 246 (264)
T ss_pred HHcCCCCCcceEEEEeCCHHHHH-hcCC-CceEEeCCHHHHHHHHHHHHHH
Confidence 55553 68888888877532 2211 12222 2335566666665544
No 177
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=54.98 E-value=93 Score=31.01 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=43.6
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc--------------------------HHHHHHHHHHhcCCC
Q 017159 158 KRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV--------------------------GECVAKELKEAKLKP 210 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I--------------------------veat~~~~~~~g~k~ 210 (376)
.+++|.+.|+++|+-+.+++-.. ...+.+..++|+|+. .+++++.+.+.+.
T Consensus 51 ~a~~Li~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~-- 128 (347)
T TIGR03863 51 ALKALLAQGVRFFVLDLPAAALLALADAAKAKGALLFNAGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRW-- 128 (347)
T ss_pred HHHHHHHCCCCEEEecCChHHHHHHHHHHHhCCcEEEeCCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCC--
Confidence 33445556777777766654333 334444556666543 2223444444333
Q ss_pred CcCCCCceEEEeecchhhc---hHHHHHHHHhcCCceee
Q 017159 211 LEAGSGVRIGVLATDATLS---AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 211 ~~~~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~ 246 (376)
+||++|.-+.... ...+++.+++.|.+++.
T Consensus 129 ------kkvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~ 161 (347)
T TIGR03863 129 ------RRILLIQGPLPADALYADAFRRSAKRFGAKIVA 161 (347)
T ss_pred ------CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEE
Confidence 4888886433222 23466677777877763
No 178
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=54.82 E-value=1.8e+02 Score=26.87 Aligned_cols=53 Identities=17% Similarity=-0.031 Sum_probs=29.5
Q ss_pred HHHHHHhhCCC--CEEEECCCccccccCCCCCCCC--eeeehHHHHHHHHHHHHHhc
Q 017159 277 IGIQLLLVRAV--NAVIIGSDEMQGVLPKDDPLLK--KCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 277 ~~i~~L~~~ga--DaVILGCTElpll~~~~~~~~v--pvIDp~~~lA~a~v~~a~~~ 329 (376)
.+++.+.+.|. |..|.|....+..........+ .+--+...+++.+++.+.+.
T Consensus 199 g~~~al~~~g~~~di~Ivg~d~~~~~~~~i~~~~l~~tv~~~~~~~g~~a~~~l~~~ 255 (275)
T cd06307 199 GVIRALREAGRAGKVVFVGHELTPETRAALRDGTIDAVIDQDPGHLARSAVRVLLAA 255 (275)
T ss_pred HHHHHHHHcCCCCCcEEEEecCChHHHHHHHcCeeEEEEEcCHHHHHHHHHHHHHHH
Confidence 44455555553 7888888888776532211122 23334456777777766443
No 179
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=54.79 E-value=1.1e+02 Score=30.70 Aligned_cols=107 Identities=18% Similarity=0.246 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-.+.++|||+|. |+-.+. |.+.+.-+.+-..|+. .|+||+=.+-.
T Consensus 141 D~Tl~~L~~~Al~~A~AGaDiVA-PSdMMD---------------GrV~aIR~aLd~~g~~--------~v~ImSYsaKy 196 (323)
T PRK09283 141 DETLELLAKQALSQAEAGADIVA-PSDMMD---------------GRVGAIREALDEAGFT--------DVPIMSYSAKY 196 (323)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEE-cccccc---------------cHHHHHHHHHHHCCCC--------CCceeecHHHH
Confidence 67778888888889999999664 554433 2344444556666764 69999988888
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-...|-....-+....+ + ++...++.++++...+ ++|||.|+.
T Consensus 197 aS~fYGPFRdA~~Sap~~gDrktYQ--m----------dp~n~~eAlre~~~D~-~EGAD~lMV 247 (323)
T PRK09283 197 ASAFYGPFRDAAGSAPQFGDRKTYQ--M----------DPANRREALREVALDI-EEGADMVMV 247 (323)
T ss_pred HHhhhHHHHHHHhcCCCCCCccccC--C----------CCCCHHHHHHHHHhhH-HhCCCEEEE
Confidence 8999887655555432211111110 0 1122455566665554 468887665
No 180
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=54.55 E-value=1.2e+02 Score=30.11 Aligned_cols=91 Identities=9% Similarity=0.065 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH-------HHH--HHHH-hcCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC-------VAK--ELKE-AKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea-------t~~--~~~~-~g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.. .+|+|++=... |-.+.++.+..++||||..+. .+. .+.+ .|.. .-.+.+|+++|
T Consensus 87 ~~dt~~vls~-~~D~iv~R~~~-~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~~---~l~g~~va~vG- 160 (311)
T PRK14804 87 IDLEARYLSR-NVSVIMARLKK-HEDLLVMKNGSQVPVINGCDNMFHPCQSLADIMTIALDSPEI---PLNQKQLTYIG- 160 (311)
T ss_pred HHHHHHHHHh-cCCEEEEeCCC-hHHHHHHHHHCCCCEEECCCCCCChHHHHHHHHHHHHHhCCC---CCCCCEEEEEC-
Confidence 3344566766 99999998764 556788888899999998542 111 1222 1200 01356999999
Q ss_pred chhhchHHHHHHHHhcCCceeecCccc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKAT 251 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~~ 251 (376)
++..-.+-.-..+...|.++.+..+..
T Consensus 161 d~~rv~~Sl~~~~~~~G~~v~~~~P~~ 187 (311)
T PRK14804 161 VHNNVVNSLIGITAALGIHLTLVTPIA 187 (311)
T ss_pred CCCcHHHHHHHHHHHcCCEEEEECCCC
Confidence 433223334456777899988776543
No 181
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.45 E-value=1e+02 Score=28.77 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=65.2
Q ss_pred HHHHHHHcCCcEEEEeCCCchh--------hHHHHhccCCCCeec----cHHHHHHHHHHhcCCCCcCCCCceEEEeecc
Q 017159 158 KRAFLEQAGARCIVMPCHISHA--------WHGDVSEGCSIPFLH----VGECVAKELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~--------~~d~L~~~~~vPvl~----Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
.++.+.+.|+|.+.+-.-+... .+.++.+.+++|++= =-.+-++.+...|.+ +| ++||.
T Consensus 37 ~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~--------~v-~iGs~ 107 (241)
T PRK13585 37 VAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVD--------RV-ILGTA 107 (241)
T ss_pred HHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCC--------EE-EEChH
Confidence 3455677899988666544211 256666777888763 001334555566653 44 67886
Q ss_pred hhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 226 ATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 226 ~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.--....+.+..+.+|.+.++++-+.....+. + .|..+.......+..+.+.+.|++.|++
T Consensus 108 ~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~-----~-~g~~~~~~~~~~~~~~~~~~~G~~~i~~ 168 (241)
T PRK13585 108 AVENPEIVRELSEEFGSERVMVSLDAKDGEVV-----I-KGWTEKTGYTPVEAAKRFEELGAGSILF 168 (241)
T ss_pred HhhChHHHHHHHHHhCCCcEEEEEEeeCCEEE-----E-CCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 54344567777777777666665543321111 1 1221111112233445556679988875
No 182
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=54.43 E-value=1.4e+02 Score=29.29 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCc
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMPCHIS 177 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIaCNTA 177 (376)
.+.+.+.+.++.+.++|||.|.|+=-++
T Consensus 174 ~it~~~~~~~~~~ieaGad~i~i~d~~~ 201 (335)
T cd00717 174 KLTDATIEYLKAQIEAGAQAVQIFDSWA 201 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCccc
Confidence 3444455566656678999998774333
No 183
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=54.15 E-value=67 Score=33.07 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=38.1
Q ss_pred CCceEEEeecchhhchHHHHHHHHh-cCCceeecCccccc-cchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 215 SGVRIGVLATDATLSAGFYQEKLQN-QGFEVVLPDKATME-HVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~s~~Y~~~L~~-~G~evv~p~~~~q~-~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.++||.|.+-+ ...-+ +.+.|.+ .|++++.-...... ......++.+..+..-.....+.++.+.+.+.++|.+|=
T Consensus 289 ~Gkrvai~g~~-~~~~~-la~~L~eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDllig 366 (427)
T PRK02842 289 RGKRVFFLPDS-QLEIP-LARFLSRECGMELVEVGTPYLNRRFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVVC 366 (427)
T ss_pred CCcEEEEECCc-hhHHH-HHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEEc
Confidence 45689887643 33332 5666776 89999866542221 111222333332211000112333344455668997664
Q ss_pred C
Q 017159 293 G 293 (376)
Q Consensus 293 G 293 (376)
+
T Consensus 367 ~ 367 (427)
T PRK02842 367 G 367 (427)
T ss_pred c
Confidence 4
No 184
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=54.14 E-value=48 Score=33.00 Aligned_cols=157 Identities=16% Similarity=0.085 Sum_probs=84.0
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCee--ccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHH
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFL--HVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQE 235 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl--~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~ 235 (376)
.++.|+..|+|.++.- -.|. ++++..+++|+. ...+..++++++.++. ....-|++-... ...+-+.
T Consensus 114 ~a~ll~~~g~d~vit~--D~H~--~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~------~~~~vvVsPd~G-~~~~A~~ 182 (320)
T PRK02269 114 VANMLEVAGVDRLLTV--DLHA--AQIQGFFDIPVDHLMGAPLIADYFDRRGLV------GDDVVVVSPDHG-GVTRARK 182 (320)
T ss_pred HHHHHhhcCCCEEEEE--CCCh--HHHhccccCCchhhhhHHHHHHHHHHhCCC------CCCcEEEEECcc-HHHHHHH
Confidence 4566888899977643 2453 567777888874 4455566777665431 012334444321 1122233
Q ss_pred HHHhcCCceeecCcccc----c-cchHHHHHHHhcCC-------hHHHHHHHHHHHHHHhhCCCCEEEECCCccccccC-
Q 017159 236 KLQNQGFEVVLPDKATM----E-HVIIPTIEALNHRD-------MEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLP- 302 (376)
Q Consensus 236 ~L~~~G~evv~p~~~~q----~-~~l~~~ie~lk~G~-------~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~- 302 (376)
..+..|..+.+.+..-. . ........+++ |. +-.+...+.++.+.|.+.|+..|...|||-=+--+
T Consensus 183 lA~~lg~~~~~~~k~r~~~~~~~~~~~~~~gdv~-Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a 261 (320)
T PRK02269 183 LAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGNVK-GKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPA 261 (320)
T ss_pred HHHHhCCCEEEEEecccCCCCceeEEEEeccccC-CCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchH
Confidence 33334665554322100 0 00111112222 21 11235678888899999999999999999332211
Q ss_pred ------C-C------CC---------CCCeeeehHHHHHHHHHHHH
Q 017159 303 ------K-D------DP---------LLKKCIDPMDALARSTVTWA 326 (376)
Q Consensus 303 ------~-~------~~---------~~vpvIDp~~~lA~a~v~~a 326 (376)
. . +. ..+.+||-...+|+++.+..
T Consensus 262 ~~~l~~~~i~~iv~Tdti~~~~~~~~~k~~~isva~~la~~i~~~~ 307 (320)
T PRK02269 262 LDNIQKSAIEKLVVLDTIYLPEERLIDKIEQISIADLLGEAIIRIH 307 (320)
T ss_pred HHHHHhCCCCEEEEeCCCCCccccccCCeEEEEhHHHHHHHHHHHH
Confidence 0 0 11 12457888888888775543
No 185
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.11 E-value=1.8e+02 Score=26.70 Aligned_cols=159 Identities=15% Similarity=0.168 Sum_probs=74.6
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc--------------------HHHHHHHHHHh--cCCCCcCC
Q 017159 160 AFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV--------------------GECVAKELKEA--KLKPLEAG 214 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~--g~k~~~~~ 214 (376)
+.+...++|.+++.....+ ..+..+++ .++|++.+ ....++.+.+. |.
T Consensus 51 ~~l~~~~vdgvii~~~~~~~~~~~l~~~~~-~~ipvV~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~~~g~------ 123 (273)
T cd06310 51 ENAIARGPDAILLAPTDAKALVPPLKEAKD-AGIPVVLIDSGLNSDIAVSFVATDNVAAGKLAAEALAELLGKK------ 123 (273)
T ss_pred HHHHHhCCCEEEEcCCChhhhHHHHHHHHH-CCCCEEEecCCCCCCcceEEEeeChHHHHHHHHHHHHHHcCCC------
Confidence 4456678998887432223 23344432 35666543 12234455554 43
Q ss_pred CCceEEEeec-ch--h--hchHHHHHHHHhc-CCceeecC--ccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHH
Q 017159 215 SGVRIGVLAT-DA--T--LSAGFYQEKLQNQ-GFEVVLPD--KATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQ 280 (376)
Q Consensus 215 ~~~rVGlLaT-~~--T--~~s~~Y~~~L~~~-G~evv~p~--~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~ 280 (376)
++|++++. +. + .+..-|++.++++ |+++.... ....+. -...+.. +..+ .++. .......+++
T Consensus 124 --~~i~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~ 200 (273)
T cd06310 124 --GKVAVISFVPGSSTTDQREEGFLEGLKEYPGIEIVATQYSDSDYAK-ALDITEDLLTANPDLKGIFGANEGSAVGAAR 200 (273)
T ss_pred --ceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEecccCCcCHHH-HHHHHHHHHHhCCCceEEEecCchhHHHHHH
Confidence 48999963 22 1 1223478888888 87654211 111111 1112222 2221 1111 1222333445
Q ss_pred HHhhCCC--CEEEECCCccccccCCCC-CCCCeeee-hHHHHHHHHHHHHHh
Q 017159 281 LLLVRAV--NAVIIGSDEMQGVLPKDD-PLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 281 ~L~~~ga--DaVILGCTElpll~~~~~-~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.+.+.|. |.-|+|+-..+....... +.....|+ +...+.+.+++.+..
T Consensus 201 ~l~~~g~~~di~vig~d~~~~~~~~~~~~~~~~ti~~~~~~~g~~a~~~l~~ 252 (273)
T cd06310 201 AVRQAGKAGKVKVVGFDASPEQIDALREGVIQALVVQNPYKMGYLGVKTAVA 252 (273)
T ss_pred HHHhcCCCCCeEEEEeCCChHHHHHHHcCceEEEEecCHHHHHHHHHHHHHH
Confidence 5555555 788888877764321111 11123332 345666666666644
No 186
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=53.95 E-value=1.2e+02 Score=29.90 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH-HHc-----CC
Q 017159 94 SSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL-EQA-----GA 167 (376)
Q Consensus 94 ~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L-~~~-----Ga 167 (376)
..+++|++||.+...=++.-+.|--+...|- +..+. ..++|....+...++.| ++. .+
T Consensus 42 ~~sl~F~~kIlerSGlG~eTy~P~~~~~~p~--~~s~~--------------~a~~Eae~v~f~av~~LL~ktgv~p~dI 105 (290)
T PF08392_consen 42 EESLDFQRKILERSGLGDETYLPPALHEIPP--DPSLA--------------AAREEAEMVIFGAVDDLLAKTGVKPSDI 105 (290)
T ss_pred hhHHHHHHHHHHhcCCCccccCCcccccCCC--cccHH--------------HHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 4568999999987754555565544443331 11110 01133333344444443 343 57
Q ss_pred cEEEEeCCCchhh---HHHHhccC
Q 017159 168 RCIVMPCHISHAW---HGDVSEGC 188 (376)
Q Consensus 168 d~IVIaCNTAH~~---~d~L~~~~ 188 (376)
|++|+.|.+..+. -..|.+++
T Consensus 106 diLVvncs~f~ptPSLsamIvnr~ 129 (290)
T PF08392_consen 106 DILVVNCSLFNPTPSLSAMIVNRY 129 (290)
T ss_pred CEEEEECcCCCcCCcHHHHHHHHh
Confidence 8899999987765 34454444
No 187
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=53.91 E-value=54 Score=30.96 Aligned_cols=114 Identities=22% Similarity=0.221 Sum_probs=67.8
Q ss_pred CcEEEEe-CCCchhhHHHHhccC-----CCCeeccHHHHHHHHHHhcCCCCcCCC-----------------CceEEEee
Q 017159 167 ARCIVMP-CHISHAWHGDVSEGC-----SIPFLHVGECVAKELKEAKLKPLEAGS-----------------GVRIGVLA 223 (376)
Q Consensus 167 ad~IVIa-CNTAH~~~d~L~~~~-----~vPvl~Iveat~~~~~~~g~k~~~~~~-----------------~~rVGlLa 223 (376)
.|.|++- -|+.+.+++.+...- +.++.-+.+.|++.+++.|+++.-.++ .++|.++.
T Consensus 51 ~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~ 130 (248)
T COG1587 51 ADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILR 130 (248)
T ss_pred CCEEEEECHHHHHHHHHHHHhhcccccccCeEEEEcHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEc
Confidence 6877665 567777777776654 489999999999999999886422211 24666666
Q ss_pred cchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccc
Q 017159 224 TDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQ 298 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElp 298 (376)
..... ....+.|...|+++..-.. |+. +.... . -....+.+...++|+|++-..+.-
T Consensus 131 ~~~~r--~~l~~~L~~~G~~v~~~~~----------Y~~-~~~~~--~---~~~~~~~~~~~~~d~v~ftS~~~v 187 (248)
T COG1587 131 GNGGR--EVLEEKLEERGAEVREVEV----------YRT-EPPPL--D---EATLIELLKLGEVDAVVFTSSSAV 187 (248)
T ss_pred CCCch--HHHHHHHHhCCCEEEEEee----------eee-cCCCc--c---HHHHHHHHHhCCCCEEEEeCHHHH
Confidence 65432 3566666777776653221 100 00000 0 122234455678888888776543
No 188
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=53.77 E-value=1.2e+02 Score=28.36 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCeeccHH----HHHHHHHHhcCCCCcCCCCceEEEe
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFLHVGE----CVAKELKEAKLKPLEAGSGVRIGVL 222 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl~Ive----at~~~~~~~g~k~~~~~~~~rVGlL 222 (376)
..+.++.+++.|+|.+.+.--+.. ..+.++++.+++|++--.. +-++.+...|.. .| ++
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~--------~v-~i 99 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGAD--------KV-SI 99 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCc--------eE-EE
Confidence 344567788999997755544422 1367788888899874321 223344444542 34 57
Q ss_pred ecchhhchHHHHHHHHhcCCc
Q 017159 223 ATDATLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 223 aT~~T~~s~~Y~~~L~~~G~e 243 (376)
||..-....++.+..++.+-+
T Consensus 100 g~~~~~~p~~~~~i~~~~~~~ 120 (243)
T cd04731 100 NSAAVENPELIREIAKRFGSQ 120 (243)
T ss_pred CchhhhChHHHHHHHHHcCCC
Confidence 775444445566666666543
No 189
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=53.73 E-value=21 Score=29.32 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhcc--CCCCeeccHHHHHHHHHHhcC
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHGDVSEG--CSIPFLHVGECVAKELKEAKL 208 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~--~~vPvl~Iveat~~~~~~~g~ 208 (376)
+....|+++|+++++|.|.+.+. .++..+. ++.|++ +|+.-+--++.|.
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~ly--~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFPLY--VDPERKLYKALGL 54 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCcEE--EeCcHHHHHHhCC
Confidence 34466889999999999999856 6666644 456655 4665444455554
No 190
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=53.63 E-value=1.8e+02 Score=26.61 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=73.9
Q ss_pred HHHHHcCCcEEEEeC-CC--chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHh--cCCCCcCCC
Q 017159 160 AFLEQAGARCIVMPC-HI--SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEA--KLKPLEAGS 215 (376)
Q Consensus 160 ~~L~~~Gad~IVIaC-NT--AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~--g~k~~~~~~ 215 (376)
+.+...++|.|++.. ++ ....++++++ .++|++.+ ...+++++.+. |.
T Consensus 49 ~~~~~~~vdgii~~~~~~~~~~~~i~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~------- 120 (273)
T cd06305 49 DQAIAQKVDAIIIQHGRAEVLKPWVKRALD-AGIPVVAFDVDSDNPKVNNTTQDDYSLARLSLDQLVKDLGGK------- 120 (273)
T ss_pred HHHHHcCCCEEEEecCChhhhHHHHHHHHH-cCCCEEEecCCCCCCccceeeechHHHHHHHHHHHHHHhCCC-------
Confidence 345556899888853 22 2233555543 34555443 22344555552 33
Q ss_pred CceEEEeecch----hhchHHHHHHHHhcC-CceeecC--c--cccccchHHHHHH-HhcC-Ch--HH----HHHHHHHH
Q 017159 216 GVRIGVLATDA----TLSAGFYQEKLQNQG-FEVVLPD--K--ATMEHVIIPTIEA-LNHR-DM--EG----ARNLLRIG 278 (376)
Q Consensus 216 ~~rVGlLaT~~----T~~s~~Y~~~L~~~G-~evv~p~--~--~~q~~~l~~~ie~-lk~G-~~--~~----a~~~l~~~ 278 (376)
++|++++... ..+...|++.+++++ +.+...- . ...+. ....++. +++. +. +. .......+
T Consensus 121 -~~i~~i~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~ 198 (273)
T cd06305 121 -GNVGYVNVAGFPPLDRRYDVWQAVLKAYPGIKEVAELGDVSNNTAQD-AAAQVEAVLKKYPKGGIDAIWAAWDEFAKGA 198 (273)
T ss_pred -CCEEEEEccCCchHHHHHHHHHHHHHHCCCcEEecccccccccchhH-HHHHHHHHHHHCCCcccCeEEEcChhhhHHH
Confidence 4899997431 122335788888877 5433210 0 01111 1111222 2221 11 10 11222334
Q ss_pred HHHHhhCC--CCEEEECCCccccc----cCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 279 IQLLLVRA--VNAVIIGSDEMQGV----LPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 279 i~~L~~~g--aDaVILGCTElpll----~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
++.+.+.| .|..|.|+-..|.. .....+....+--+...+++.+++.+...
T Consensus 199 ~~~l~~~g~~~di~iig~d~~~~~~~~i~~~~~~~~~tv~~~~~~~g~~a~~~l~~~ 255 (273)
T cd06305 199 KQALDEAGRTDEIKIYGVDISPEDLQLMREPDSPWVATAAQDPALIGKVAVRNVARL 255 (273)
T ss_pred HHHHHHcCCCCCceEEEecCCHHHHHHHHccCCceEEEecCCHHHHHHHHHHHHHHH
Confidence 44555554 36888888877742 21111111122234555666666666443
No 191
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=53.50 E-value=54 Score=33.01 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH---HHHHhcCCceeecC
Q 017159 194 HVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ---EKLQNQGFEVVLPD 248 (376)
Q Consensus 194 ~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~---~~L~~~G~evv~p~ 248 (376)
+.++...+.+++.|.+ |+.|++.+...+.+.++ +.|++.|+++.+.+
T Consensus 12 g~l~~l~~~l~~~g~~--------~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~ 61 (374)
T cd08189 12 GSLAQLPAAISQLGVK--------KVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYD 61 (374)
T ss_pred CHHHHHHHHHHhcCCC--------eEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeC
Confidence 3455555666665543 88888777665555444 45667788776543
No 192
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=53.09 E-value=1.9e+02 Score=26.87 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=53.5
Q ss_pred ceEEEeecchh----hchHHHHHHHHhc-CCceee--cCccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHh
Q 017159 217 VRIGVLATDAT----LSAGFYQEKLQNQ-GFEVVL--PDKATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLLL 283 (376)
Q Consensus 217 ~rVGlLaT~~T----~~s~~Y~~~L~~~-G~evv~--p~~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L~ 283 (376)
++|++++.... .+..-|++.++++ |+++.. ......+. -...++. ++.+ +++. .......+++.+.
T Consensus 132 ~~i~~l~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~A~g~l~al~ 210 (280)
T cd06303 132 ARYAMLYFSPGYISTARGDTFIDCVHARNNWTLTSEFYTDATRQK-AYQATSDILSNNPDVDFIYACSTDIALGASDALK 210 (280)
T ss_pred cEEEEEECCCCcchhHHHHHHHHHHHhCCCceEEEeecCCCCHHH-HHHHHHHHHHhCCCCcEEEECCcHHHHHHHHHHH
Confidence 48999965321 1223378888887 766432 11111111 1112222 2222 1110 1122234455555
Q ss_pred hCCC--CEEEECCCccccccCCC-C-CCCCeeeehHHHHHHHHHHHHHhc
Q 017159 284 VRAV--NAVIIGSDEMQGVLPKD-D-PLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 284 ~~ga--DaVILGCTElpll~~~~-~-~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
+.|. |..|.|.-..|...... + .....+..+...+++.+++.+...
T Consensus 211 ~~G~~~dv~vvg~d~~~~~~~~~~~g~~~~tv~~~~~~~g~~~~~~~~~~ 260 (280)
T cd06303 211 ELGREDDILINGWGGGSAELDAIQQGELDVTVMRMNDDTGVAMAEAIKLD 260 (280)
T ss_pred HcCCCCCcEEEecCCCHHHHHHHHcCCceEEEecCchHhHHHHHHHHHHH
Confidence 5553 67888887766532221 1 111234445577777777776654
No 193
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=52.94 E-value=68 Score=31.67 Aligned_cols=89 Identities=17% Similarity=0.062 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH-------HHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC-------VAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea-------t~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++.|.+. +|+|||=+.. |..+.++.+..++||||..+. .+. .+.+. |- -.+.||+++|-
T Consensus 83 l~Dt~~vls~y-~D~iviR~~~-~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-----l~g~kva~vGD 155 (302)
T PRK14805 83 VADFAANLSCW-ADAIVARVFS-HSTIEQLAEHGSVPVINALCDLYHPCQALADFLTLAEQFGD-----VSKVKLAYVGD 155 (302)
T ss_pred HHHHHHHHHHh-CCEEEEeCCC-hhHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCC-----cCCcEEEEEcC
Confidence 45556778877 9999999874 777889999999999998542 111 12221 21 23468999997
Q ss_pred chhhchHHHHHHHHhcCCceeecCccc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKAT 251 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~~ 251 (376)
...+ .+-+-..+...|.++.+..++.
T Consensus 156 ~~~v-~~S~~~~~~~~g~~v~~~~P~~ 181 (302)
T PRK14805 156 GNNV-THSLMYGAAILGATMTVICPPG 181 (302)
T ss_pred CCcc-HHHHHHHHHHcCCEEEEECCch
Confidence 3322 2234456777899988776543
No 194
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=52.84 E-value=1.9e+02 Score=26.55 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=41.6
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeeccH---------------------HHHHHHHHHhcCCCCcCC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHVG---------------------ECVAKELKEAKLKPLEAG 214 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~Iv---------------------eat~~~~~~~g~k~~~~~ 214 (376)
++.+.+.++|.+++.+.... ..++++ ...++|++.+- ..+++++.+.. +
T Consensus 49 i~~l~~~~vdgiii~~~~~~~~~~~~~~l-~~~~iPvv~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~------~ 121 (272)
T cd06301 49 VENFIAQGVDAIIVVPVDTAATAPIVKAA-NAAGIPLVYVNRRPENAPKGVAYVGSDEVVAGRLQAEYVADKL------G 121 (272)
T ss_pred HHHHHHcCCCEEEEecCchhhhHHHHHHH-HHCCCeEEEecCCCCCCCCeeEEEecChHHHHHHHHHHHHHHh------C
Confidence 34566789999987554322 123333 23356655331 12344555440 1
Q ss_pred CCceEEEeecch-h----hchHHHHHHHHhcC-Cce
Q 017159 215 SGVRIGVLATDA-T----LSAGFYQEKLQNQG-FEV 244 (376)
Q Consensus 215 ~~~rVGlLaT~~-T----~~s~~Y~~~L~~~G-~ev 244 (376)
..++|++++... . .+..-|.+.++++| +++
T Consensus 122 ~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 157 (272)
T cd06301 122 GKGNVAILMGPLGQSAQIDRTKGVEEVLAKYPDIKV 157 (272)
T ss_pred CCccEEEEECCCCCccHHHHHHHHHHHHHHCCCcEE
Confidence 124899996532 1 12234788888887 443
No 195
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=52.46 E-value=81 Score=32.00 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCC
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCH 175 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCN 175 (376)
+.+...+.++.+.++|||+|-|--.
T Consensus 187 ltd~~i~Yl~~qi~aGAdavqifDs 211 (352)
T COG0407 187 LTDAVIEYLKAQIEAGADAVQIFDS 211 (352)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeecc
Confidence 3444455556677899999988654
No 196
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=52.32 E-value=2.1e+02 Score=26.96 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=26.0
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeeccH
Q 017159 158 KRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHVG 196 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iv 196 (376)
.++.+...|+.+|+=|.++.... ...+....++|++...
T Consensus 55 ~c~l~~~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~ 94 (328)
T cd06351 55 VCDLLVSQGVAAIFGPTSSESASAVQSICDALEIPHISIS 94 (328)
T ss_pred HHHHHhccCcEEEECCCCHHHHHHHHHHhccCCCCeEEee
Confidence 34444467888877666554433 5677778899998863
No 197
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=52.31 E-value=29 Score=34.08 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhH-----------HHHhccCCCCee-----ccHHHHHHHHHHhcC
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWH-----------GDVSEGCSIPFL-----HVGECVAKELKEAKL 208 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~-----------d~L~~~~~vPvl-----~Iveat~~~~~~~g~ 208 (376)
++.+|.++.|+|+++++.-|+|=.| ++|++.+++|++ ++-+.-.+.+.+.|.
T Consensus 160 eA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi 227 (285)
T PRK07709 160 ECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGT 227 (285)
T ss_pred HHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCC
Confidence 3446677889999999999999764 345555556643 334444444555554
No 198
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=52.30 E-value=43 Score=32.70 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=17.0
Q ss_pred HHHHHHcCCcEEEEeCCCchhh
Q 017159 159 RAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
.++.++.|+|++++++-|.|..
T Consensus 159 ~~f~~~tgvD~Lavs~Gt~hg~ 180 (282)
T TIGR01859 159 EQFVKETGVDYLAAAIGTSHGK 180 (282)
T ss_pred HHHHHHHCcCEEeeccCccccc
Confidence 3445557999999999999943
No 199
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=52.24 E-value=1.4e+02 Score=29.80 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV 195 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I 195 (376)
...++.|. .|+.+|+=|..+.... ...+.+..+||.|..
T Consensus 63 ~~~~~~l~-~~V~AiiGp~~S~~~~av~~i~~~~~iP~Is~ 102 (384)
T cd06393 63 KKACDQLA-LGVVAIFGPSQGSCTNAVQSICNALEVPHIQL 102 (384)
T ss_pred HHhhcccc-cCcEEEECCCChHHHHHHHHHHhccCCCeEec
Confidence 33344443 5788777666654433 556667778887753
No 200
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=51.82 E-value=1.1e+02 Score=30.47 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-...++|||+| -|.+-+.=....|| +.+-+.|+. .|+|++=..-.
T Consensus 146 D~Tle~l~k~Avs~AeAGAdiv-APSdMMDGrV~aIR---------------~aLd~ag~~--------~v~IMsYsaKy 201 (330)
T COG0113 146 DETLEILAKQAVSQAEAGADIV-APSDMMDGRVGAIR---------------EALDEAGFI--------DVPIMSYSAKY 201 (330)
T ss_pred hHHHHHHHHHHHHHHHcCCCee-cccccccchHHHHH---------------HHHHHcCCC--------cceeeehhHHH
Confidence 5677778888888889999955 46665554444443 344455664 78999988888
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-.+.+-....-+..+.+ + +....++.++++...+ ++|||.|+.
T Consensus 202 ASafYGPFRdAa~Sap~~gdrktYQ--m----------DpaN~~EAlrE~~lD~-~EGAD~lMV 252 (330)
T COG0113 202 ASAFYGPFRDAAGSAPKFGDRKTYQ--M----------DPANRREALREIELDI-EEGADILMV 252 (330)
T ss_pred hhhccccHHHHhhcccccCCcceec--c----------CCcCHHHHHHHHHhhH-hcCCcEEEE
Confidence 8888876544443322222211111 0 1112455666665444 579997765
No 201
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=51.67 E-value=56 Score=32.25 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=46.3
Q ss_pred HHHHHHHcCCcEEEEeCC---------CchhhHHHHhccCCCCeec---cHHHH-HHHHHHhcCCCCcCCCCceEEEeec
Q 017159 158 KRAFLEQAGARCIVMPCH---------ISHAWHGDVSEGCSIPFLH---VGECV-AKELKEAKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCN---------TAH~~~d~L~~~~~vPvl~---Iveat-~~~~~~~g~k~~~~~~~~rVGlLaT 224 (376)
.++.++++|||.|++-.. .....+.++++.+++||+- |.+.. +.++...|.. -..+||
T Consensus 121 ~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~---------gV~iGt 191 (307)
T TIGR03151 121 LAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAE---------AVQMGT 191 (307)
T ss_pred HHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCC---------Eeecch
Confidence 356788899999987332 1122378888888999984 33322 4444446642 334666
Q ss_pred chh-----hchHHHHHHHHhcC
Q 017159 225 DAT-----LSAGFYQEKLQNQG 241 (376)
Q Consensus 225 ~~T-----~~s~~Y~~~L~~~G 241 (376)
.+. -.+..|++.+.+.+
T Consensus 192 ~f~~t~Es~~~~~~k~~l~~~~ 213 (307)
T TIGR03151 192 RFLCAKECNVHPNYKEKVLKAK 213 (307)
T ss_pred HHhcccccCCCHHHHHHHHhCC
Confidence 543 33567898886653
No 202
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=51.37 E-value=72 Score=32.11 Aligned_cols=39 Identities=8% Similarity=0.134 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh--HHHHhccCCCCeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW--HGDVSEGCSIPFLH 194 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~ 194 (376)
+.++.+.+...||+.|=|=..+.+.. ...+. ..+|||++
T Consensus 116 v~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~-~~GIPV~g 156 (332)
T PLN02424 116 VESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIV-EAGIAVMG 156 (332)
T ss_pred HHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHH-HcCCCEEE
Confidence 55555555778999998887643321 33333 44777774
No 203
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=51.31 E-value=68 Score=32.17 Aligned_cols=46 Identities=20% Similarity=0.047 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhcCCceeecC
Q 017159 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPD 248 (376)
Q Consensus 195 Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~ 248 (376)
.++...+.+...|. +|+.|++.+.+.....+.+.|++.|+++.+.+
T Consensus 10 ~l~~l~~~~~~~g~--------~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~ 55 (367)
T cd08182 10 AIAKLPSLLKGLGG--------KRVLLVTGPRSAIASGLTDILKPLGTLVVVFD 55 (367)
T ss_pred HHHHHHHHHHhcCC--------CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEc
Confidence 34455555655443 38888877766544556777888887776554
No 204
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=51.20 E-value=53 Score=33.17 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH---HHHHhcCCceeecC
Q 017159 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ---EKLQNQGFEVVLPD 248 (376)
Q Consensus 195 Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~---~~L~~~G~evv~p~ 248 (376)
..+...+.+++.|.+ |+.|++-+...+.++++ +.|++.|+++.+.+
T Consensus 16 ~l~~l~~~l~~~g~~--------r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~ 64 (379)
T TIGR02638 16 AIEDIVDEVKRRGFK--------KALVVTDKDLIKFGVADKVTDLLDEAGIAYELFD 64 (379)
T ss_pred HHHHHHHHHHhcCCC--------EEEEEcCcchhhccchHHHHHHHHHCCCeEEEEC
Confidence 345555666665543 88888777666655544 55677788776654
No 205
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=51.18 E-value=1e+02 Score=30.85 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-.+.++|||+|. |+..+. |.+.+.-+.+-+.|+. .|+||+=..-.
T Consensus 138 D~Tl~~L~~~Avs~A~AGADiVA-PSdMMD---------------GrV~aIR~aLd~~g~~--------~v~ImSYsaKy 193 (320)
T cd04823 138 DETVEVLCKQALVQAEAGADIVA-PSDMMD---------------GRIGAIREALDAEGFT--------NVSILSYAAKY 193 (320)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEE-cccchh---------------hHHHHHHHHHHHCCCC--------CCceeechHHh
Confidence 67778888888889999999654 655443 2344444556666764 68999888888
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-...+-....-+..+.+ + ++...++.++++.... ++|||.|+.
T Consensus 194 aS~fYGPFRdAa~Sap~fgDRksYQ--m----------dp~n~~eAlre~~~Di-~EGAD~lMV 244 (320)
T cd04823 194 ASAFYGPFRDALGSAPRKGDKKTYQ--M----------DPANSREALREVALDI-AEGADMVMV 244 (320)
T ss_pred hhhccchhHHHhcCCCCCCCccccC--C----------CCCCHHHHHHHHHhhH-HhCCCEEEE
Confidence 8888887655544332211111111 0 1112455566665544 468887654
No 206
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=51.12 E-value=1.5e+02 Score=27.42 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=46.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhh--HHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCC
Q 017159 159 RAFLEQAGARCIVMPCHISHAW--HGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~ 216 (376)
++.+.+.++|.|++.....+.. +.+++ ..++|++-+ ....++++.+.|.+ ....
T Consensus 50 i~~~~~~~vdgiI~~~~~~~~~~~~~~~~-~~giPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~---~~~~ 125 (268)
T cd06306 50 LEDCAAWGADAILLGAVSPDGLNEILQQV-AASIPVIALVNDINSPDITAKVGVSWYEMGYQAGEYLAQRHPK---GSKP 125 (268)
T ss_pred HHHHHHcCCCEEEEcCCChhhHHHHHHHH-HCCCCEEEeccCCCCcceeEEecCChHHHHHHHHHHHHHHhhc---CCCC
Confidence 3556678999998866544433 44443 356776633 22345556665531 0112
Q ss_pred ceEEEeecchhh-----chHHHHHHHHhcCCcee
Q 017159 217 VRIGVLATDATL-----SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 217 ~rVGlLaT~~T~-----~s~~Y~~~L~~~G~evv 245 (376)
++|++++-+... +..-|.+.++++++++.
T Consensus 126 ~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~~~~~ 159 (268)
T cd06306 126 AKVAWFPGPKGAGWVKAVEKGFRDALAGSAIEIS 159 (268)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhhcCcEEe
Confidence 589988543211 12237778888887654
No 207
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=50.73 E-value=35 Score=33.57 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWH 181 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~ 181 (376)
++.+|.++-|+|+++++.-|+|=.|
T Consensus 159 ea~~Fv~~TgvD~LAvaiGt~HG~Y 183 (286)
T PRK12738 159 EAKRFVELTGVDSLAVAIGTAHGLY 183 (286)
T ss_pred HHHHHHHHhCCCEEEeccCcccCCC
Confidence 3446667789999999999999754
No 208
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=50.69 E-value=75 Score=31.13 Aligned_cols=105 Identities=11% Similarity=0.028 Sum_probs=56.5
Q ss_pred cCCeEEEEc-CCChHHHHHHHHHHHHHhhhCC-CCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 81 QANTIGIIG-GVSVSSTLNFLGKLVWYSAKDA-EECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 81 ~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~d-q~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
+.++|+|+| |-|.- ++.|.+....++ ...+..|+.|+|+........+.|...-...+.+ +++. -.+.
T Consensus 88 ~~~ri~vl~Sg~g~n-----l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~--~~~~---~~~~ 157 (286)
T PRK13011 88 ARPKVLIMVSKFDHC-----LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDT--KPQQ---EAQV 157 (286)
T ss_pred cCceEEEEEcCCccc-----HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCc--hhhh---HHHH
Confidence 345899998 53322 677777665543 3567777778887654322223333210000111 1111 1223
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
.+.|++.++|++|++-. ....-+.+-+...-.++|+=
T Consensus 158 ~~~l~~~~~Dlivlagy-~~il~~~~l~~~~~~iiNiH 194 (286)
T PRK13011 158 LDVVEESGAELVVLARY-MQVLSPELCRKLAGRAINIH 194 (286)
T ss_pred HHHHHHhCcCEEEEeCh-hhhCCHHHHhhccCCeEEec
Confidence 45678899999999854 34444455555555566653
No 209
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=50.68 E-value=94 Score=26.13 Aligned_cols=121 Identities=14% Similarity=0.045 Sum_probs=60.7
Q ss_pred HHHHHHhcCCCCcCCCCceEEEeecchh-----hchHHHHHHHHhcCCceeecCcccccc--chHHH-HHHHhc----CC
Q 017159 200 AKELKEAKLKPLEAGSGVRIGVLATDAT-----LSAGFYQEKLQNQGFEVVLPDKATMEH--VIIPT-IEALNH----RD 267 (376)
Q Consensus 200 ~~~~~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~evv~p~~~~q~~--~l~~~-ie~lk~----G~ 267 (376)
++++.++|++ +|++++.... .+..-|+..++++|++...-....... ..... ...++. +.
T Consensus 1 ~~~L~~~G~r--------~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdai 72 (160)
T PF13377_consen 1 VDYLIERGHR--------RIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAI 72 (160)
T ss_dssp HHHHHHTT-S--------SEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEE
T ss_pred ChHHHHCCCC--------eEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEE
Confidence 4577888876 9999994321 122227778888888765432211110 00000 011221 11
Q ss_pred hHHHHHHHHHHHHHHhhCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhcc
Q 017159 268 MEGARNLLRIGIQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSNK 330 (376)
Q Consensus 268 ~~~a~~~l~~~i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~~ 330 (376)
+-........++..+.+.| -|.-|+++.+.+.. ....+ ++..|+ +.+.+++.+++.+.+.-
T Consensus 73 i~~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~~~~~-~~~~p-~it~i~~~~~~~g~~a~~~l~~~i 138 (160)
T PF13377_consen 73 ICSNDRLALGVLRALRELGIRVPQDISVVSFDDSPLL-EFFSP-PITTIDQDPREMGREAVELLLDRI 138 (160)
T ss_dssp EESSHHHHHHHHHHHHHTTSCTTTTSEEEEESSSGHH-HCSSS-TSEEEEE-HHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHcCCcccccccEEEecCcHHH-HHHcC-CCceecCCHHHHHHHHHHHHHHHh
Confidence 1111223333444454444 47888888887755 22222 234443 46667888888776653
No 210
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=50.58 E-value=2.8e+02 Score=27.94 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCCCCCCeeeehHHHHHHHH
Q 017159 267 DMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARST 322 (376)
Q Consensus 267 ~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~ 322 (376)
+.+.+....+.-++.+.+.|+|.||-.|.-=-+-++. ..+++++.|++.++++.
T Consensus 343 ~~~~s~~i~~~~~~~~~~~~ad~ivt~Cp~C~~ql~~--~~~~~~~H~~ell~~~~ 396 (397)
T TIGR03379 343 NYETSQAIGKSLFDQIEQSGADYVITDCETCKWQIEM--STSLECIHPISLLAMAL 396 (397)
T ss_pred chHHHHHHHHHHHHHHHHhCCCEEEeCCcchHHHHHh--cCCCCCCCHHHHHHHHh
Confidence 3344566666777778888999999999754433332 23567899999999864
No 211
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=50.56 E-value=65 Score=32.98 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHH---HHhcCCceeecCc
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEK---LQNQGFEVVLPDK 249 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~---L~~~G~evv~p~~ 249 (376)
++...+.++..|.+ |+.|+..++..+.+++++. |++.|+++.+.++
T Consensus 17 l~~l~~~~~~~g~~--------r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~ 65 (377)
T COG1454 17 LKELGEEVKRLGAK--------RALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDE 65 (377)
T ss_pred HHHHHHHHHhcCCC--------ceEEEECCccccchhHHHHHHHHHhcCCeEEEecC
Confidence 45555566665554 8999999998888887754 5666877776654
No 212
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=50.45 E-value=2.6e+02 Score=27.46 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCch
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHISH 178 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTAH 178 (376)
+.+.+.+.++.+.++|||.|.+.--.+.
T Consensus 178 i~~~~~~~~~~~~~aGad~I~i~d~~a~ 205 (339)
T PRK06252 178 VTDFCIEYAKAQLEAGADVICIADPSAS 205 (339)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCcc
Confidence 4444555666677889999988765443
No 213
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=50.41 E-value=64 Score=32.74 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH---HHHHhcCCceeecCc
Q 017159 194 HVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ---EKLQNQGFEVVLPDK 249 (376)
Q Consensus 194 ~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~---~~L~~~G~evv~p~~ 249 (376)
+.++...+.+++.|.+ |+.|++.+.-.+.++++ +.|++.|+++.+.+.
T Consensus 17 g~~~~l~~~~~~~g~~--------~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~ 67 (383)
T PRK09860 17 DSLTDAMNMMADYGFT--------RTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDG 67 (383)
T ss_pred CHHHHHHHHHHhcCCC--------EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCC
Confidence 3445555666666543 78877665444455544 456667887765543
No 214
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=50.37 E-value=2.6e+02 Score=27.52 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCc
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHIS 177 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTA 177 (376)
+.+.+.+.++.+.++|||.+.|.=.++
T Consensus 178 ~t~~~~~~~~~~~eaGad~i~i~d~~~ 204 (338)
T TIGR01464 178 LTDATIEYLVEQVKAGAQAVQIFDSWA 204 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 344445555656678999988764433
No 215
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=50.28 E-value=81 Score=32.29 Aligned_cols=108 Identities=13% Similarity=-0.025 Sum_probs=53.7
Q ss_pred CCceEEEeecchhhchHHHHHHHHhcCCceeecCccccccch-HHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 215 SGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVI-IPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l-~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
.+|||.|.+-+ ...- -+.+.|.+.|++++........... ....+.+..+..-.....+.+..+.+.+.++|.+|=+
T Consensus 273 ~Gkrv~i~gd~-~~~~-~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~i~~~~pDllig~ 350 (407)
T TIGR01279 273 RGKKIFFFGDN-LLEL-PLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQRIRATRPDLVVTG 350 (407)
T ss_pred CCCEEEEECCc-hHHH-HHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHHHHhcCCCEEecC
Confidence 45789987654 3222 3678888899999876543221111 1222223221100011123344455566789966644
Q ss_pred CCcc--ccccCCCCCCCCeeeeh-------------HHHHHHHHHHHHHhcc
Q 017159 294 SDEM--QGVLPKDDPLLKKCIDP-------------MDALARSTVTWARSNK 330 (376)
Q Consensus 294 CTEl--pll~~~~~~~~vpvIDp-------------~~~lA~a~v~~a~~~~ 330 (376)
+.+ |++ ..++|+.|. +..+++.+++.+...+
T Consensus 351 -~~~~~pl~-----r~GfP~~dr~~~~~~p~~Gy~Ga~~l~~~i~n~l~~~~ 396 (407)
T TIGR01279 351 -LGTANPLE-----AQGFTTKWSIEFTFAQIHGFDNAADLAELFTRPLLRRT 396 (407)
T ss_pred -ccCCCcHh-----hCCcceeEeeceEEEcccCHHHHHHHHHHHHHHHHHHH
Confidence 422 222 234455554 4556666666655554
No 216
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=50.10 E-value=44 Score=31.85 Aligned_cols=50 Identities=22% Similarity=0.161 Sum_probs=28.1
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH---HHHHHHHHHhcC
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG---ECVAKELKEAKL 208 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv---eat~~~~~~~g~ 208 (376)
++...++|||+|.+++-..-.-+.++.+.+++|+.-+. ..+.+++.+.|+
T Consensus 161 ~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~v~~~~~~~~~~eL~~lGv 213 (238)
T PF13714_consen 161 AKAYAEAGADMIFIPGLQSEEEIERIVKAVDGPLNVNPGPGTLSAEELAELGV 213 (238)
T ss_dssp HHHHHHTT-SEEEETTSSSHHHHHHHHHHHSSEEEEETTSSSS-HHHHHHTTE
T ss_pred HHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHHCCC
Confidence 34456799999999998644345566666666643322 123444555444
No 217
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=50.02 E-value=52 Score=34.36 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=62.4
Q ss_pred ceEEEeecchh--hchH---HHHHHHHhcCCceeecCc-cccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEE
Q 017159 217 VRIGVLATDAT--LSAG---FYQEKLQNQGFEVVLPDK-ATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAV 290 (376)
Q Consensus 217 ~rVGlLaT~~T--~~s~---~Y~~~L~~~G~evv~p~~-~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaV 290 (376)
.+|.++..-.+ .... -..+.|++.|+++.+|.. .|=. . -....|+.+.+++..++.++.+.+.|++.|
T Consensus 261 ~~v~~f~GC~~~~~~~~~~~a~~~vL~~~G~~~~~~~~~~CCG--~----p~~~~G~~~~~~~~~~~ni~~~~~~~~~~I 334 (486)
T PRK06259 261 LRVAFFTGCLVDYRLQEVGKDAIRVLNAHGISVIIPKNQVCCG--S----PLIRTGQTDVAEELKKKNLEIFNKLDVDTV 334 (486)
T ss_pred eEEEEECCccccccchHHHHHHHHHHHHCCCeEecCCCCCccc--H----HHHhcCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 46877643221 1111 134668888999998853 2222 1 123457777788888888888888899999
Q ss_pred EECCCccccccCCCCC-CCCeeeehHHHHHH
Q 017159 291 IIGSDEMQGVLPKDDP-LLKKCIDPMDALAR 320 (376)
Q Consensus 291 ILGCTElpll~~~~~~-~~vpvIDp~~~lA~ 320 (376)
|-.|.+=-..+....+ ...+++|-.+.+++
T Consensus 335 Vt~c~~C~~~l~~~y~~~~~~v~~i~e~L~~ 365 (486)
T PRK06259 335 VTICAGCGSTLKNDYKEKEFNVMDITEVLVE 365 (486)
T ss_pred EECCchHHHHHHHhccccccceeeHHHHHHH
Confidence 9988765444432211 23578888888876
No 218
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=49.99 E-value=2.3e+02 Score=26.80 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhc---hHHHHHHHHhcCCcee
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDATLS---AGFYQEKLQNQGFEVV 245 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv 245 (376)
.+++++.++..+.+ +|+++....+.- ...+++.+++.+..++
T Consensus 109 ~~a~~~~l~~~~w~--------~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (348)
T PF01094_consen 109 ARALVDLLKHFGWT--------RVSVVYSDDDYGNSLADSFQDLLRERGGICV 153 (348)
T ss_dssp HHHHHHHHHHTTSS--------EEEEEEESSHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhhhcCCCc--------eeeeeccccccccccchhhhhhhccccccee
Confidence 44455556665543 899999887762 2235666777654443
No 219
>PLN02192 3-ketoacyl-CoA synthase
Probab=49.90 E-value=1e+02 Score=32.95 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH-HHHcC-----
Q 017159 93 VSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF-LEQAG----- 166 (376)
Q Consensus 93 p~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~-L~~~G----- 166 (376)
..-+++|.+||.+.+.=+++-++|--+...| |+..+ . ..++|....+..+++. |+++|
T Consensus 134 ~~~~~~f~~~~~~~sglg~~t~~p~~~~~~~--~~~~~----~----------~~~~Ea~~~~~~Aa~~aL~kaGi~p~D 197 (511)
T PLN02192 134 TEENLEFQRKILERSGLGESTYLPEAVLNVP--PNPCM----A----------EARKEAETVMFGAIDQLLAKTSVKPKD 197 (511)
T ss_pred CHHHHHHHHHHHHhcCCCCcccCChhhccCC--CCccH----H----------HHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3567799999999887666666665554433 11111 0 0124555555555554 46666
Q ss_pred CcEEEEeCCCchhh---HHHHhccCC----CCeeccHH--H--------HHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 167 ARCIVMPCHISHAW---HGDVSEGCS----IPFLHVGE--C--------VAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 167 ad~IVIaCNTAH~~---~d~L~~~~~----vPvl~Ive--a--------t~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
+|.||.+|.+..+. -..++++++ ++-+++-- + +++.+.+. .+++++.|++|..
T Consensus 198 IDiLIv~~S~~~~~PSlaa~I~n~lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a-------~~~~~aLVVstE~ 267 (511)
T PLN02192 198 IGILIVNCSLFNPTPSLSAMVINHYKLRGNILSYNLGGMGCSAGLISIDLAKHLLQV-------HPNSYALVISMEN 267 (511)
T ss_pred CCEEEEECCCCCCCchHHHHHHHHhCCCCCceEEEcccchhhhHHHHHHHHHHHHHc-------CCCCeEEEEEEEe
Confidence 48999888765433 234555443 44555531 1 12223332 2346888999875
No 220
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=49.72 E-value=1.1e+02 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHH
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAWHG 182 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~~d 182 (376)
.+.++.+.+.|+..|+|.|+..++..+
T Consensus 70 ~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 70 IELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp HHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred hhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 344467888999999999998776533
No 221
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=49.57 E-value=1.1e+02 Score=30.43 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-...++|||+|. |+.-+. |.+.+.-+.+-+.|+. .|+||+=.+-.
T Consensus 133 D~Tl~~L~k~Als~A~AGADiVA-PSdMMD---------------GrV~aIR~aLd~~g~~--------~v~ImsYsaKy 188 (314)
T cd00384 133 DATLELLAKIAVSHAEAGADIVA-PSDMMD---------------GRVAAIREALDEAGFS--------DVPIMSYSAKY 188 (314)
T ss_pred HHHHHHHHHHHHHHHHcCCCeee-cccccc---------------cHHHHHHHHHHHCCCC--------CCceeecHHHh
Confidence 66777888888889999999654 554443 2234444455666764 68999988888
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-.+.|-....-+..+.+ + ++...++.++++...+ ++|||.|+.
T Consensus 189 aSafYGPFRdAa~Sap~~gDRktYQ--m----------dpan~~eAlre~~~D~-~EGAD~lMV 239 (314)
T cd00384 189 ASAFYGPFRDAADSAPSFGDRKTYQ--M----------DPANRREALREVELDI-EEGADILMV 239 (314)
T ss_pred hhhccchHHHHhhcCCCCCCccccC--C----------CCCCHHHHHHHHHhhH-HhCCCEEEE
Confidence 8999887655544332211111111 0 1112455666665544 468987664
No 222
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=49.03 E-value=2.2e+02 Score=32.61 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCchhh----HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhc
Q 017159 154 NLRHKRAFLEQAGARCIVMPCHISHAW----HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLS 229 (376)
Q Consensus 154 ~l~~~~~~L~~~Gad~IVIaCNTAH~~----~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~ 229 (376)
.+.+.+..+..+++..||..-++-... +|-+...+.||||+|..-.+-....+. ..-.+-=||..---+
T Consensus 88 ll~~vC~lvs~~~V~glvf~d~s~~~avaq~LDfiSs~t~iPIisi~gg~a~~~~~kd-------~gs~flQlg~Sieqq 160 (1258)
T KOG1053|consen 88 LLTQVCDLVSGARVHGLVFEDDSDTEAVAQILDFISSQTHIPIISIHGGAAMVLTPKD-------LGSTFLQLGPSIEQQ 160 (1258)
T ss_pred HHHHHHhhhhhcceeEEEeecCccchHHHHHHHHHHHhcCCcEEEEecCccceecCCC-------CcceEEEeCCcHHHH
Confidence 355667778889999999999886443 788889999999998643322211110 112455566655555
Q ss_pred hHHHHHHHHhcC
Q 017159 230 AGFYQEKLQNQG 241 (376)
Q Consensus 230 s~~Y~~~L~~~G 241 (376)
..+.-+.|++++
T Consensus 161 a~Vml~iL~~yd 172 (1258)
T KOG1053|consen 161 AQVMLKILEEYD 172 (1258)
T ss_pred HHHHHHHHHHcC
Confidence 566667777774
No 223
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=48.99 E-value=1.1e+02 Score=29.68 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhh-----HHHHhccCCCCeec---cHHH-HHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAW-----HGDVSEGCSIPFLH---VGEC-VAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~-----~d~L~~~~~vPvl~---Ivea-t~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
.+.++..++.||++|-+.|-.-++- +..+++.+++|++- |+++ -+.+++..|.. -|.+++.--
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GAD--------aVLLI~~~L 142 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGAD--------AVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-S--------EEEEEGGGS
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCC--------EeehhHHhC
Confidence 3445668889999999999863332 45566778999775 2333 35666777754 455444422
Q ss_pred hhch-HHHHHHHHhcCCceee
Q 017159 227 TLSA-GFYQEKLQNQGFEVVL 246 (376)
Q Consensus 227 T~~s-~~Y~~~L~~~G~evv~ 246 (376)
.-+. ..+-+.....|+++++
T Consensus 143 ~~~~l~~l~~~a~~lGle~lV 163 (254)
T PF00218_consen 143 SDDQLEELLELAHSLGLEALV 163 (254)
T ss_dssp GHHHHHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEE
Confidence 2222 2233445667999886
No 224
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=48.97 E-value=60 Score=31.46 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 017159 155 LRHKRAFLEQAGARCIVMP 173 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIa 173 (376)
+.+.++.++++|+|+|++-
T Consensus 171 ~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 171 ITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 3455677899999999773
No 225
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=48.96 E-value=2.5e+02 Score=26.97 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=12.9
Q ss_pred HHHHHHHHhhCCCCEEEECC
Q 017159 275 LRIGIQLLLVRAVNAVIIGS 294 (376)
Q Consensus 275 l~~~i~~L~~~gaDaVILGC 294 (376)
+...+..+.+.++|+|++..
T Consensus 176 ~~~~v~~l~~~~pd~v~~~~ 195 (333)
T cd06358 176 FTSVLERIAASGADAVLSTL 195 (333)
T ss_pred HHHHHHHHHHcCCCEEEEeC
Confidence 45555666667788777644
No 226
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=48.94 E-value=91 Score=30.83 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeec--cHHHHHHHHHHhcCCCCcCCCCceEEEeecc--hhhchHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLH--VGECVAKELKEAKLKPLEAGSGVRIGVLATD--ATLSAGF 232 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~--Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~--~T~~s~~ 232 (376)
-.++.|+.+|+|.++.-= .|. +.++.-+++|+-+ ..+..++++++.+++ ..-|+|.. +......
T Consensus 108 ~~a~lL~~~g~d~vitvD--~H~--~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~--------~~vvv~pd~Gg~~~A~~ 175 (309)
T PRK01259 108 LVANLLETAGADRVLTMD--LHA--DQIQGFFDIPVDNLYGSPILLEDIKQKNLE--------NLVVVSPDVGGVVRARA 175 (309)
T ss_pred HHHHHHhhcCCCEEEEEc--CCh--HHHcCcCCCCceeeeecHHHHHHHHhcCCC--------CcEEEEECCCcHHHHHH
Confidence 345678888999876543 463 5677777777654 466778888765543 33344443 2222222
Q ss_pred HHHHHHhcCCceeecCccccc-c--chHHHHHHHhcCC-------hHHHHHHHHHHHHHHhhCCCCEEEECCCcc
Q 017159 233 YQEKLQNQGFEVVLPDKATME-H--VIIPTIEALNHRD-------MEGARNLLRIGIQLLLVRAVNAVIIGSDEM 297 (376)
Q Consensus 233 Y~~~L~~~G~evv~p~~~~q~-~--~l~~~ie~lk~G~-------~~~a~~~l~~~i~~L~~~gaDaVILGCTEl 297 (376)
+.+. .|....+-+..... . ........++ |. +-.+...+..+++.|.+.|+..|.+.|||-
T Consensus 176 la~~---Lg~~~~~~~k~r~~~~~~~~~~~~~~~~-g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~tH~ 246 (309)
T PRK01259 176 LAKR---LDADLAIIDKRRPRANVSEVMNIIGDVE-GRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHP 246 (309)
T ss_pred HHHH---hCCCEEEEEeecccceeEEEEeecccCC-CCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEEee
Confidence 3333 36555543332111 0 0001111222 21 112355678888889899999999999984
No 227
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=48.88 E-value=64 Score=31.69 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=60.0
Q ss_pred cCCeEEEEc-CCChHHHHHHHHHHHHHhhhCC-CCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 81 QANTIGIIG-GVSVSSTLNFLGKLVWYSAKDA-EECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 81 ~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~d-q~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
+.++|+|+. |-|.- ++.|.+....++ ...+.+|+.|+|+...+...++.|...-...+.+. ++. =.+.
T Consensus 92 ~~~kiavl~Sg~g~n-----l~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~--~~~---~~~~ 161 (289)
T PRK13010 92 QRPKVVIMVSKFDHC-----LNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTPDTK--AQQ---EAQI 161 (289)
T ss_pred CCeEEEEEEeCCCcc-----HHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCCcccc--cch---HHHH
Confidence 345789987 66654 667777766544 35688888898877544443344432101011111 111 1123
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
.+.|++.++|+||++-. .+..-+.+-+.+.-.++|+=
T Consensus 162 ~~~l~~~~~Dlivlagy-m~il~~~~l~~~~~~iiNiH 198 (289)
T PRK13010 162 LDLIETSGAELVVLARY-MQVLSDDLSRKLSGRAINIH 198 (289)
T ss_pred HHHHHHhCCCEEEEehh-hhhCCHHHHhhccCCceeeC
Confidence 45678899999999876 34444455555555566653
No 228
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=48.77 E-value=55 Score=28.86 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=52.7
Q ss_pred CceEEEeecchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChH-HHHHHHHHHHHHHhhCCCCEEEECC
Q 017159 216 GVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDME-GARNLLRIGIQLLLVRAVNAVIIGS 294 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~-~a~~~l~~~i~~L~~~gaDaVILGC 294 (376)
+|||-++|-+.-+-....+..++..|-+++.-..+|--- -.+|.++ +.+..++++.+++-..++ +|||||
T Consensus 6 gKkviiiGdRDGiPgpAie~c~k~~gaevvfs~TECfVc--------taAGAMDLEnQ~Rvk~~aEk~g~eNv-vVllGa 76 (154)
T PRK13265 6 GKKVIIIGDRDGIPGPAIEECVKTTGAEVVFSSTECFVU--------TAAGAMDLENQKRVKDLAEKFGAENV-VVILGA 76 (154)
T ss_pred CcEEEEEecCCCCCcHHHHHHHhccCceEEEEeeeEEEe--------ecccccchHHHHHHHHHHHhcCCccE-EEEecc
Confidence 469999999998988889999998999999887776321 1124442 356667777766643343 688999
Q ss_pred Cccc
Q 017159 295 DEMQ 298 (376)
Q Consensus 295 TElp 298 (376)
.|=-
T Consensus 77 aeaE 80 (154)
T PRK13265 77 AEAE 80 (154)
T ss_pred cchh
Confidence 8743
No 229
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.66 E-value=1e+02 Score=32.83 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW-HGDVSE 186 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~ 186 (376)
|..++-||.+.+..+++.||+|.-.. .++|+-
T Consensus 395 LAKIayWLlqNkfrVLIAACDTFRsGAvEQLrt 427 (587)
T KOG0781|consen 395 LAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRT 427 (587)
T ss_pred HHHHHHHHHhCCceEEEEeccchhhhHHHHHHH
Confidence 56677899999999999999998765 566653
No 230
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=48.47 E-value=72 Score=31.12 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=37.5
Q ss_pred HHHHHHHcCCcEEEEeCCCch-------hhHHHHhccCCCCee-c--cHHHHHHHHHHhcCC
Q 017159 158 KRAFLEQAGARCIVMPCHISH-------AWHGDVSEGCSIPFL-H--VGECVAKELKEAKLK 209 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH-------~~~d~L~~~~~vPvl-~--Iveat~~~~~~~g~k 209 (376)
.++.++..|+|+|.+.+|..+ ..++++++.+++|++ . +-...++.+.+.|.+
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d 195 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGAD 195 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCC
Confidence 345667789999999999886 458889988888876 2 223445666666653
No 231
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=48.41 E-value=1.1e+02 Score=30.07 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=40.3
Q ss_pred CCeEEEEcCC---ChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 82 ANTIGIIGGV---SVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 82 ~k~IGIIGGm---Gp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
.|+-|-.||. .-.+..++.++|........ ..++++.-..+ ..+ .....++.++ .
T Consensus 117 pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~--~~~~~IiARTD---a~~-------------~~~~~~eAi~----R 174 (285)
T TIGR02320 117 LKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT--TEDFMIIARVE---SLI-------------LGKGMEDALK----R 174 (285)
T ss_pred CccccccCCCCcccccCHHHHHHHHHHHHHhcc--CCCeEEEEecc---ccc-------------ccCCHHHHHH----H
Confidence 5677778876 34567778888876654322 23555544321 100 0011133333 3
Q ss_pred HHHHHHcCCcEEEEeC
Q 017159 159 RAFLEQAGARCIVMPC 174 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaC 174 (376)
++...++|||+|.+++
T Consensus 175 a~ay~eAGAD~ifv~~ 190 (285)
T TIGR02320 175 AEAYAEAGADGIMIHS 190 (285)
T ss_pred HHHHHHcCCCEEEecC
Confidence 4567789999999986
No 232
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=48.15 E-value=32 Score=33.86 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWH 181 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~ 181 (376)
++.+|.++-|+|+++++.-|+|=.|
T Consensus 160 ea~~Fv~~TgvD~LAvaiGt~HG~Y 184 (286)
T PRK08610 160 ECQELVEKTGIDALAPALGSVHGPY 184 (286)
T ss_pred HHHHHHHHHCCCEEEeecccccccc
Confidence 3445667889999999999999754
No 233
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=48.03 E-value=68 Score=30.36 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh--------hHHHHhccCCCCeeccH----HHHHHHHHHhcCCCCcCCCCceEEEeec
Q 017159 157 HKRAFLEQAGARCIVMPCHISHA--------WHGDVSEGCSIPFLHVG----ECVAKELKEAKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~--------~~d~L~~~~~vPvl~Iv----eat~~~~~~~g~k~~~~~~~~rVGlLaT 224 (376)
+.++.++..|++.+.+.--++.- .+.++.+.+++|++--. .+.++.+...|.. +| +++|
T Consensus 34 ~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~--------~V-iigt 104 (253)
T PRK02083 34 ELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGAD--------KV-SINS 104 (253)
T ss_pred HHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCC--------EE-EECh
Confidence 34456778999988776655431 36677788889987421 2234444445542 45 6888
Q ss_pred chhhchHHHHHHHHhcCCc
Q 017159 225 DATLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~e 243 (376)
..-....++.+..+.+|-+
T Consensus 105 ~~l~~p~~~~ei~~~~g~~ 123 (253)
T PRK02083 105 AAVANPELISEAADRFGSQ 123 (253)
T ss_pred hHhhCcHHHHHHHHHcCCC
Confidence 6655566777777776533
No 234
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=47.95 E-value=2.1e+02 Score=28.72 Aligned_cols=87 Identities=13% Similarity=0.050 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh--cCCCCcCCCCceEEEee
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA--KLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~--g~k~~~~~~~~rVGlLa 223 (376)
+.+.++-|.+. +|+||+=+.. |..++++.+..++||||... +.+. .+.+. |. -.+.+|+++|
T Consensus 90 l~DTarvls~y-~D~iviR~~~-~~~~~~~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~e~~~g~-----l~g~kia~vG 162 (332)
T PRK04284 90 TKDTARVLGGM-YDGIEYRGFS-QRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEHLKKP-----YKDIKFTYVG 162 (332)
T ss_pred HHHHHHHHHHh-CCEEEEecCc-hHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhcCC-----cCCcEEEEec
Confidence 55556778888 9999999875 67788999999999999643 1111 12222 21 1346999999
Q ss_pred cc--hhhchHHHHHHHHhcCCceeecCcc
Q 017159 224 TD--ATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 224 T~--~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
-. .+..| .-..+...|.++.+..+.
T Consensus 163 D~~~~v~~S--l~~~~~~~g~~v~~~~P~ 189 (332)
T PRK04284 163 DGRNNVANA--LMQGAAIMGMDFHLVCPK 189 (332)
T ss_pred CCCcchHHH--HHHHHHHcCCEEEEECCc
Confidence 52 33333 344567779888876654
No 235
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=47.76 E-value=1.4e+02 Score=29.82 Aligned_cols=107 Identities=14% Similarity=0.147 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcC-CCCcCCCCceEEEeecchh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKL-KPLEAGSGVRIGVLATDAT 227 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~-k~~~~~~~~rVGlLaT~~T 227 (376)
++-++.+.+.+-.+.++|||+|+ |+--+. |.+.+.-+.+-..|+ . .|+||+=..-
T Consensus 137 D~Tl~~L~k~Avs~A~AGADiVA-PSdMMD---------------GrV~aIR~aLD~~G~~~--------~v~ImSYsaK 192 (320)
T cd04824 137 EASVKRLAEVALAYAKAGAHIVA-PSDMMD---------------GRVRAIKQALIQAGLGN--------KVSVMSYSAK 192 (320)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEe-cccccc---------------cHHHHHHHHHHHCCCcc--------CCeeeehHHH
Confidence 67778888888889999999664 554433 223444445556666 3 7899988888
Q ss_pred hchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 228 LSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 228 ~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
..|.+|...-+..+-.. ...++.. + .+ +....++.++++.... ++|||.|+.
T Consensus 193 yaS~fYGPFRdAa~Sap---~~gDRks-----Y-Qm---dp~n~~eAlre~~~D~-~EGAD~lMV 244 (320)
T cd04824 193 FASCLYGPFRDAACSAP---SFGDRRC-----Y-QL---PPGARGLALRAVERDV-SEGADMIMV 244 (320)
T ss_pred hhhhccchHHHHhcCCC---CCCCccc-----c-CC---CCcCHHHHHHHHHhhH-HhCCCEEEE
Confidence 88888887655544332 1111110 1 00 1122455666665544 568997764
No 236
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.43 E-value=31 Score=32.62 Aligned_cols=53 Identities=11% Similarity=0.207 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh--HHHHhccCCCCeeccHHHHH-HHHHHhcCC
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAW--HGDVSEGCSIPFLHVGECVA-KELKEAKLK 209 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~Iveat~-~~~~~~g~k 209 (376)
+.++.+..-++|+|.|.|.-.-.+ ++.|.+.+++||++-=.++. ..++..|.+
T Consensus 170 ~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G~PVvsSN~AT~W~~Lr~~g~~ 225 (238)
T COG3473 170 RLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTGVPVVSSNQATLWMALRLIGLR 225 (238)
T ss_pred HHHHHhcCCCCCeEEEEeeccccHHHHHHHHHHhCCceeeccHHHHHHHHHHcCCc
Confidence 344567788999999999877666 88999999999999877764 344555543
No 237
>PLN02932 3-ketoacyl-CoA synthase
Probab=47.25 E-value=1.4e+02 Score=31.64 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH-HHcC-----CcE
Q 017159 96 TLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL-EQAG-----ARC 169 (376)
Q Consensus 96 T~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L-~~~G-----ad~ 169 (376)
+++|+++|.+.+.=++..++|.-+...| ++..+. . -++|......++++.+ +++| +|.
T Consensus 109 ~~~f~~~i~~rsGig~~t~~p~~~~~~~--~~~~~~----~----------~~~ea~~la~~Aa~~aL~~agi~p~dId~ 172 (478)
T PLN02932 109 LMDFCEKILERSGLGQETYIPEGLQCLP--LQQNLA----V----------SRKETEEVIIGAVDNLFRNTGISPSDIGI 172 (478)
T ss_pred HHHHHHHHHHHcCCCCceeeccccccCC--HHHHHH----H----------HHHHHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 5899999999886555566665444433 222111 0 1144555555555554 5554 689
Q ss_pred EEEeCCCchhh---HHHHhccCCC----CeeccH--HH--------HHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 170 IVMPCHISHAW---HGDVSEGCSI----PFLHVG--EC--------VAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 170 IVIaCNTAH~~---~d~L~~~~~v----Pvl~Iv--ea--------t~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
||++|.|..+. -..|++++++ +-+++- -+ +++.+.+. .+++++.|++|..
T Consensus 173 lIv~tst~~~~Pslaa~V~~~lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll~~-------~~~~~aLVVstE~ 239 (478)
T PLN02932 173 LVVNSSTFNPTPSLSSILVNKFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLLQV-------HRNTYALVVSTEN 239 (478)
T ss_pred EEEEccCCCCCCcHHHHHHHHhCCCCCceEEEeccchhhhHHHHHHHHHHHHHc-------CCCCeEEEEEEee
Confidence 99999997554 3445555544 344442 11 12233332 2346888888865
No 238
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=47.18 E-value=83 Score=31.55 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHH-hcCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKE-AKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~-~g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++.|.+. +|+||+=+.. |-.++++.+..++||||... +.+. .+.+ .|.. -.+.+|+++|=
T Consensus 91 l~DTarvls~y-~D~iv~R~~~-~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~----l~gl~ia~vGD 164 (334)
T PRK01713 91 MKDTARVLGRM-YDAIEYRGFK-QSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIENCDKP----LSEISYVYIGD 164 (334)
T ss_pred HHHHHHHHHHh-CCEEEEEcCc-hHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHcCCC----cCCcEEEEECC
Confidence 55566778887 9999999874 67788888889999999743 1111 1222 1200 13468999986
Q ss_pred c--hhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 D--ATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~--~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
. .+..| .-..+...|.++.+..+.
T Consensus 165 ~~~~v~~S--l~~~~~~~g~~v~~~~P~ 190 (334)
T PRK01713 165 ARNNMGNS--LLLIGAKLGMDVRICAPK 190 (334)
T ss_pred CccCHHHH--HHHHHHHcCCEEEEECCc
Confidence 2 33333 345677789988876654
No 239
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=46.94 E-value=3.1e+02 Score=27.43 Aligned_cols=156 Identities=11% Similarity=0.041 Sum_probs=79.9
Q ss_pred HHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeeccH------------------HHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 161 FLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHVG------------------ECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iv------------------eat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
.|-+.||-+|+=|....... ...+.+..+||.|..- .+.+..++..+. ++|++
T Consensus 58 ~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~w--------k~vai 129 (371)
T cd06388 58 SQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEW--------NRFVF 129 (371)
T ss_pred HHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHHhcCc--------eEEEE
Confidence 45667999887777664444 6778888899998521 123333333343 48998
Q ss_pred eecchh-h-chHHHHHHHHhcCCceee---cCccccccchHHHHHHHhcCCh-----HHHHHHHHHHHHHHhhCCCCEE-
Q 017159 222 LATDAT-L-SAGFYQEKLQNQGFEVVL---PDKATMEHVIIPTIEALNHRDM-----EGARNLLRIGIQLLLVRAVNAV- 290 (376)
Q Consensus 222 LaT~~T-~-~s~~Y~~~L~~~G~evv~---p~~~~q~~~l~~~ie~lk~G~~-----~~a~~~l~~~i~~L~~~gaDaV- 290 (376)
+.-... . ....+.+.+++.|.+++. ......+ +.+.+.+++.... +-.-+....+++...+.|-..-
T Consensus 130 iYd~~~~~~~lq~l~~~~~~~g~~v~~~~~~~~~~~d--~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~ 207 (371)
T cd06388 130 LYDTDRGYSILQAIMEKAGQNGWQVSAICVENFNDAS--YRRLLEDLDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKG 207 (371)
T ss_pred EecCCccHHHHHHHHHhhHhcCCeeeeEEeccCCcHH--HHHHHHHhcccccEEEEEECCHHHHHHHHHHHHhcCccccc
Confidence 874221 1 122244455666877653 1111222 4455666765332 1112334444555555566554
Q ss_pred ---EECCCcccccc-CC-----CCCCCCeeeehHHHHHHHHHHHH
Q 017159 291 ---IIGSDEMQGVL-PK-----DDPLLKKCIDPMDALARSTVTWA 326 (376)
Q Consensus 291 ---ILGCTElpll~-~~-----~~~~~vpvIDp~~~lA~a~v~~a 326 (376)
|+|..++.-.. .. ..-.++.++|+....++..++..
T Consensus 208 y~~il~~~~~~~~~l~~~~~g~~nitg~~~~~~~~~~v~~~~~~~ 252 (371)
T cd06388 208 YHYIIANLGFKDISLERFMHGGANVTGFQLVDFNTPMVTKLMQRW 252 (371)
T ss_pred eEEEEccCccccccHHHHhccCCceEEEEeecCCChhHHHHHHHH
Confidence 77765543221 10 01123455665555555544433
No 240
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=46.94 E-value=36 Score=33.42 Aligned_cols=52 Identities=15% Similarity=0.341 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh-----------HHHHhccCCCCee-----ccHHHHHHHHHHhcC
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAW-----------HGDVSEGCSIPFL-----HVGECVAKELKEAKL 208 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~-----------~d~L~~~~~vPvl-----~Iveat~~~~~~~g~ 208 (376)
++.+|.++-|+|+++++.-|+|=. +++|++.+++|++ ++-+.-.+.+.+.|.
T Consensus 157 ea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi 224 (282)
T TIGR01858 157 EAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGI 224 (282)
T ss_pred HHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCC
Confidence 345667789999999999999974 3445556666654 344444555555554
No 241
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=46.90 E-value=3e+02 Score=28.18 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCcEEEEe-CCCchhh--HHHHhccCCCCeecc
Q 017159 154 NLRHKRAFLEQAGARCIVMP-CHISHAW--HGDVSEGCSIPFLHV 195 (376)
Q Consensus 154 ~l~~~~~~L~~~Gad~IVIa-CNTAH~~--~d~L~~~~~vPvl~I 195 (376)
.....++.|-..|+-+|+-+ .+. +.+ ++-+...+.||+|.+
T Consensus 69 ~~~~vC~~ll~~GV~AIfg~p~s~-~~~~~v~sic~~l~IP~I~~ 112 (382)
T cd06377 69 LLRSVCQTVVVQGVSALLAFPQTR-PELVQLDFVSAALEIPVVSI 112 (382)
T ss_pred HHHHHHHhHhhCCeEEEEecCCCH-HHHHHHHHHhcCCCCCEEEe
Confidence 35556676678899999774 654 443 677888889999987
No 242
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=46.85 E-value=47 Score=33.56 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHH
Q 017159 153 QNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKEL 203 (376)
Q Consensus 153 ~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~ 203 (376)
+.....++.+.+.|+|.||.+|-+=+.-+ +...+++++|+++-.++++
T Consensus 349 ~i~~~~~~~~~~~~ad~ivt~Cp~C~~ql---~~~~~~~~~H~~ell~~~~ 396 (397)
T TIGR03379 349 AIGKSLFDQIEQSGADYVITDCETCKWQI---EMSTSLECIHPISLLAMAL 396 (397)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCcchHHHH---HhcCCCCCCCHHHHHHHHh
Confidence 33445667788899999999998755444 4567899999998877653
No 243
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=46.64 E-value=1.4e+02 Score=28.24 Aligned_cols=77 Identities=8% Similarity=0.095 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh---HHHHhc-cCCCC---eeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW---HGDVSE-GCSIP---FLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDAT 227 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~---~d~L~~-~~~vP---vl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T 227 (376)
..+.++.|.+.|..++++.-||.... .+.+++ .++++ |+.-..+++..+++.+ ..++|-++|+.+
T Consensus 22 a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~~-------~~~~v~~lg~~~- 93 (249)
T TIGR01457 22 AETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDLK-------LEKTVYVIGEEG- 93 (249)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhcC-------CCCEEEEEcChh-
Confidence 34556778889999877776664333 333433 23444 7777778888888753 235899999974
Q ss_pred hchHHHHHHHHhcCCce
Q 017159 228 LSAGFYQEKLQNQGFEV 244 (376)
Q Consensus 228 ~~s~~Y~~~L~~~G~ev 244 (376)
..+.++++|+++
T Consensus 94 -----l~~~l~~~g~~~ 105 (249)
T TIGR01457 94 -----LKEAIKEAGYVE 105 (249)
T ss_pred -----HHHHHHHcCCEe
Confidence 345667778764
No 244
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=46.62 E-value=48 Score=29.31 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=46.9
Q ss_pred hchHHHHHHHHhcCCceeecCc-cccccchHHHHHHHh-----cCChHHHHHHHHHHHHHHhhCCCCEEE-ECCCcccc
Q 017159 228 LSAGFYQEKLQNQGFEVVLPDK-ATMEHVIIPTIEALN-----HRDMEGARNLLRIGIQLLLVRAVNAVI-IGSDEMQG 299 (376)
Q Consensus 228 ~~s~~Y~~~L~~~G~evv~p~~-~~q~~~l~~~ie~lk-----~G~~~~a~~~l~~~i~~L~~~gaDaVI-LGCTElpl 299 (376)
....+..+.|++.|++|+.+.. ..+++.+..++++=- .+-.......+..+++.|.++|++.|+ ++.-.+|.
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~ 105 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPP 105 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCc
Confidence 4567788899999999998865 333443332222200 011122467888899999999988777 77777774
No 245
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=46.57 E-value=39 Score=33.16 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhH-----------HHHhccCCCCee-----ccHHHHHHHHHHhcC
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWH-----------GDVSEGCSIPFL-----HVGECVAKELKEAKL 208 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~-----------d~L~~~~~vPvl-----~Iveat~~~~~~~g~ 208 (376)
++.+|.++-|+|+++++.-|+|=.| ++|++.+++|++ ++-+.-.+.+.+.|.
T Consensus 159 eA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi 226 (284)
T PRK12737 159 AAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGI 226 (284)
T ss_pred HHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCC
Confidence 3446677789999999999999754 444455555543 233444444444444
No 246
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.41 E-value=2e+02 Score=26.78 Aligned_cols=77 Identities=14% Similarity=-0.004 Sum_probs=42.4
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc-------------------------HHHHHHHHHHh--cC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV-------------------------GECVAKELKEA--KL 208 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I-------------------------veat~~~~~~~--g~ 208 (376)
++.+.+.++|.|++.....+ ..++.+++ .++|++-+ ...+++++.+. |.
T Consensus 49 i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~-~~iPvV~~d~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~L~~~~~G~ 127 (280)
T cd06315 49 LNQAIALKPDGIVLGGVDAAELQAELELAQK-AGIPVVGWHAGPEPGPIEEPGIFYNVTTDPLAVAEVAALYAIANSGGK 127 (280)
T ss_pred HHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH-CCCCEEEecCCCCCCcccCCceeEEecCCHHHHHHHHHHHHHHHcCCC
Confidence 34577789999988654332 33455543 35554333 12345556666 44
Q ss_pred CCCcCCCCceEEEeecchhhc----hHHHHHHHHhc-CCce
Q 017159 209 KPLEAGSGVRIGVLATDATLS----AGFYQEKLQNQ-GFEV 244 (376)
Q Consensus 209 k~~~~~~~~rVGlLaT~~T~~----s~~Y~~~L~~~-G~ev 244 (376)
++|++++.+.... ...|+..++.. +..+
T Consensus 128 --------~~i~~i~~~~~~~~~~r~~~~~~~~~a~~~~~~ 160 (280)
T cd06315 128 --------AGVVIFTDSRFSIAKAKANAMKEIIEACKGCTV 160 (280)
T ss_pred --------ceEEEEeCCCCccHHHHHHHHHHHHHhCCCCEE
Confidence 4899997553311 23566666654 4443
No 247
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=46.22 E-value=79 Score=31.72 Aligned_cols=87 Identities=10% Similarity=0.088 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH-------HHH--HHHH-hcCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC-------VAK--ELKE-AKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea-------t~~--~~~~-~g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|... +|+||+=+. .|..++++.+..++||||..+. .+. .+.+ .|. -.+.+|+++|-
T Consensus 91 l~Dt~rvls~y-~D~iviR~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~g~~va~vGd 163 (331)
T PRK02102 91 IEDTARVLGRM-YDGIEYRGF-KQEIVEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKEHFGP-----LKGLKLAYVGD 163 (331)
T ss_pred HHHHHHHHhhc-CCEEEEECC-chHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCC-----CCCCEEEEECC
Confidence 45556677777 999999987 4777999999999999996431 111 1222 121 13469999986
Q ss_pred c--hhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 D--ATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~--~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
. .+..+ +-..+...|.++.+..++
T Consensus 164 ~~~~v~~S--l~~~~~~~g~~v~~~~P~ 189 (331)
T PRK02102 164 GRNNMANS--LMVGGAKLGMDVRICAPK 189 (331)
T ss_pred CcccHHHH--HHHHHHHcCCEEEEECCc
Confidence 3 44444 344577789988876654
No 248
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=46.18 E-value=30 Score=30.23 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE 197 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive 197 (376)
+.+.++.|.+. +|+||+=... |..++++.+..++||||..+
T Consensus 84 l~Dtar~ls~~-~D~iv~R~~~-~~~~~~~a~~~~vPVINa~~ 124 (142)
T PF02729_consen 84 LEDTARVLSRY-VDAIVIRHPS-HGALEELAEHSSVPVINAGD 124 (142)
T ss_dssp HHHHHHHHHHH-CSEEEEEESS-HHHHHHHHHHCSSEEEEEEE
T ss_pred HHHHHHHHHHh-hheEEEEecc-chHHHHHHHhccCCeEcCcC
Confidence 45556778888 9999998774 77899999999999999754
No 249
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.69 E-value=2.5e+02 Score=28.72 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=46.2
Q ss_pred CCcEEEEeCC--CchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcCC
Q 017159 166 GARCIVMPCH--ISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQGF 242 (376)
Q Consensus 166 Gad~IVIaCN--TAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G~ 242 (376)
++|.||+.-- -.|+.+.+.++ .++|+++=++...+.. .. +.|||-||.| |--+.+....|...|.
T Consensus 68 ~~d~vV~sp~i~~~~p~~~~a~~-~~i~i~~~~el~~~~~---~~--------~~I~VTGT~GKTTTt~li~~iL~~~g~ 135 (448)
T PRK03803 68 QASEIIISPGLALDTPALRAAAA-MGIEVIGDIELFAREA---KA--------PVIAITGSNGKSTVTTLVGEMAKAAGK 135 (448)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-CCCcEEEHHHHHHHhc---CC--------CEEEEECCCcHHHHHHHHHHHHHhcCC
Confidence 5787776542 23666666654 4899999777654433 11 3799999988 3345567778888887
Q ss_pred ceeec
Q 017159 243 EVVLP 247 (376)
Q Consensus 243 evv~p 247 (376)
.+...
T Consensus 136 ~~~~g 140 (448)
T PRK03803 136 RVAVG 140 (448)
T ss_pred CeEEe
Confidence 66553
No 250
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=45.46 E-value=1.1e+02 Score=29.70 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=17.3
Q ss_pred HHHHHHHHhhCCCCEEEECCCccc
Q 017159 275 LRIGIQLLLVRAVNAVIIGSDEMQ 298 (376)
Q Consensus 275 l~~~i~~L~~~gaDaVILGCTElp 298 (376)
+...+.++.+.++|+|++.+..-.
T Consensus 188 ~~~~i~~l~~~~~d~v~~~~~~~~ 211 (347)
T cd06340 188 LTSEVLKLKAANPDAILPASYTND 211 (347)
T ss_pred hHHHHHHHHhcCCCEEEEcccchh
Confidence 445556677788999999887544
No 251
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=45.44 E-value=3.3e+02 Score=27.31 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=48.0
Q ss_pred EEEeecchhhchHHHHHHHHhcCCcee-ecCccccccchHHHHHHHhc-CCh----H--HHHHHHHHHHHHHhhCCCC--
Q 017159 219 IGVLATDATLSAGFYQEKLQNQGFEVV-LPDKATMEHVIIPTIEALNH-RDM----E--GARNLLRIGIQLLLVRAVN-- 288 (376)
Q Consensus 219 VGlLaT~~T~~s~~Y~~~L~~~G~evv-~p~~~~q~~~l~~~ie~lk~-G~~----~--~a~~~l~~~i~~L~~~gaD-- 288 (376)
+.+++|++-..+ -+.+++.|++.+ +++.+.++ .++++.+.+ |.. . ...+.+..+++.+.+.|.+
T Consensus 90 i~~~stpfd~~s---vd~l~~~~v~~~KIaS~~~~n---~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~ 163 (329)
T TIGR03569 90 IEFLSTPFDLES---ADFLEDLGVPRFKIPSGEITN---APLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDS 163 (329)
T ss_pred CcEEEEeCCHHH---HHHHHhcCCCEEEECcccccC---HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcC
Confidence 558888876553 567788888877 44444443 355666543 332 1 1356677788888777764
Q ss_pred -EEEECCCc-ccc
Q 017159 289 -AVIIGSDE-MQG 299 (376)
Q Consensus 289 -aVILGCTE-lpl 299 (376)
.++|=||- ||.
T Consensus 164 ~i~llhC~s~YP~ 176 (329)
T TIGR03569 164 NITLLHCTTEYPA 176 (329)
T ss_pred cEEEEEECCCCCC
Confidence 88888875 564
No 252
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=45.40 E-value=56 Score=30.73 Aligned_cols=60 Identities=23% Similarity=0.272 Sum_probs=40.5
Q ss_pred hHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHH---HHHHHHHHHHHhhCCCCEEEECC
Q 017159 230 AGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGA---RNLLRIGIQLLLVRAVNAVIIGS 294 (376)
Q Consensus 230 s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a---~~~l~~~i~~L~~~gaDaVILGC 294 (376)
-.+|+..+++.|++|++++....+ + ++.......+++ .+.+.--+..|.++|+|.|.+=|
T Consensus 14 ~p~W~~FF~~LG~~Vv~S~~T~k~--i---~~~G~~~~~~e~C~P~Kl~hGHv~~L~~k~vD~IF~P~ 76 (221)
T PF09989_consen 14 YPFWQTFFTELGFEVVLSPPTNKE--I---LDKGVKSAPSEFCFPVKLAHGHVADLLEKGVDYIFLPR 76 (221)
T ss_pred hHHHHHHHHHcCCEEEECCCCcHH--H---HHHHhhhCCCCcchhHHHHHHHHHHHHhCCCCEEEECC
Confidence 357889999999999998765443 2 222111112232 45666677788889999999865
No 253
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=45.34 E-value=96 Score=30.58 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH-------HHH--HHHH-hcCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC-------VAK--ELKE-AKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea-------t~~--~~~~-~g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|... +|+||+=... |-..+++.+..++||||.... .+. .+.+ .|. -.+.+|+++|-
T Consensus 84 l~Dt~~vls~y-~D~iv~R~~~-~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-----l~g~~v~~vGd 156 (304)
T TIGR00658 84 IKDTARVLSRY-VDGIMARVYK-HEDVEELAKYASVPVINGLTDLFHPCQALADLLTIIEHFGK-----LKGVKVVYVGD 156 (304)
T ss_pred HHHHHHHHHHh-CCEEEEECCC-hHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEEeC
Confidence 55556778877 9999999874 667889999999999997431 111 1222 221 13468999986
Q ss_pred c-hhhchHHHHHHHHhcCCceeecCccc
Q 017159 225 D-ATLSAGFYQEKLQNQGFEVVLPDKAT 251 (376)
Q Consensus 225 ~-~T~~s~~Y~~~L~~~G~evv~p~~~~ 251 (376)
. .|..| .-..+...|+++.+..++.
T Consensus 157 ~~~v~~S--l~~~l~~~g~~v~~~~P~~ 182 (304)
T TIGR00658 157 GNNVCNS--LMLAGAKLGMDVVVATPEG 182 (304)
T ss_pred CCchHHH--HHHHHHHcCCEEEEECCch
Confidence 3 23333 3456778899988776543
No 254
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=45.30 E-value=2.4e+02 Score=25.57 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=42.4
Q ss_pred HHHHHcCCcEEEEe-CCCc-hhhHHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMP-CHIS-HAWHGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIa-CNTA-H~~~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|...++|.|++. ++.. -..++.+++ .++|++-+ +...++.+.+.|. ++|
T Consensus 49 ~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~i 119 (266)
T cd06282 49 ETLLRQRVDGLILTVADAATSPALDLLDA-ERVPYVLAYNDPQPGRPSVSVDNRAAARDVAQALAALGH--------RRI 119 (266)
T ss_pred HHHHhcCCCEEEEecCCCCchHHHHHHhh-CCCCEEEEeccCCCCCCEEeeCcHHHHHHHHHHHHHcCc--------ccE
Confidence 44666789998874 5432 123555543 25554322 2334555665554 489
Q ss_pred EEeecch------hhchHHHHHHHHhcCCce
Q 017159 220 GVLATDA------TLSAGFYQEKLQNQGFEV 244 (376)
Q Consensus 220 GlLaT~~------T~~s~~Y~~~L~~~G~ev 244 (376)
+++..+. .-+..-|.+.++++|+++
T Consensus 120 ~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~ 150 (266)
T cd06282 120 AMLAGRLAASDRARQRYAGYRAAMRAAGLAP 150 (266)
T ss_pred EEeccccccCchHHHHHHHHHHHHHHcCCCC
Confidence 9995321 112234778888888764
No 255
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.03 E-value=1.1e+02 Score=31.32 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=45.3
Q ss_pred cCCcEEEEeCCC--chhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcC
Q 017159 165 AGARCIVMPCHI--SHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQG 241 (376)
Q Consensus 165 ~Gad~IVIaCNT--AH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G 241 (376)
.+.|++|+...- .|+.+.+.++ .++|+++-.+...+... . .+.|||-||.| |-.+.+....|+..|
T Consensus 67 ~~~d~vv~s~gi~~~~~~~~~a~~-~~i~v~~~~~~~~~~~~--~--------~~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 67 DQPDLVVVSPGIPWDHPTLVELRE-RGIEVIGEIELAWRALK--H--------IPWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred hcCCEEEECCCCCCCCHHHHHHHH-cCCcEEEhHHHHHHhhc--C--------CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 368888874332 2445655554 58999997766543221 1 23899999988 555667778888877
Q ss_pred Cce
Q 017159 242 FEV 244 (376)
Q Consensus 242 ~ev 244 (376)
...
T Consensus 136 ~~~ 138 (459)
T PRK02705 136 LNA 138 (459)
T ss_pred CCe
Confidence 654
No 256
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=44.75 E-value=3e+02 Score=27.45 Aligned_cols=129 Identities=12% Similarity=0.055 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchh----hHHHHhccCC-----CCeecc--------------HHHHHHHHHH
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHA----WHGDVSEGCS-----IPFLHV--------------GECVAKELKE 205 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~----~~d~L~~~~~-----vPvl~I--------------veat~~~~~~ 205 (376)
+++.+..++.++-|.+-|||.++|=+-..-- .+..+++.+. +||+=- +++....+..
T Consensus 139 d~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~ 218 (311)
T COG0646 139 DELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEH 218 (311)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhc
Confidence 7788888999999999999999998764322 1333333333 665411 2333334443
Q ss_pred hcCCCCcCCCCceEEEeecchhhchHHHHHHHHhc--CCceeecCccccccchHHHHHHHhcCC---hHHHHHHHHHHHH
Q 017159 206 AKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ--GFEVVLPDKATMEHVIIPTIEALNHRD---MEGARNLLRIGIQ 280 (376)
Q Consensus 206 ~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~--G~evv~p~~~~q~~~l~~~ie~lk~G~---~~~a~~~l~~~i~ 280 (376)
.+. --||+=+--+--...-+-+.+.+. -+-.+.|+..-++ . . |. .++.-+.+...++
T Consensus 219 ~~~--------~~vGlNCa~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~--~-------~-g~~~~Y~~~p~~~a~~~~ 280 (311)
T COG0646 219 LGP--------DAVGLNCALGPDEMRPHLRELSRIADAFVSVYPNAGLPN--A-------F-GERAVYDLTPEYMAEALA 280 (311)
T ss_pred cCC--------cEEeeccccCHHHHHHHHHHHHhccCceEEEeCCCCCCc--c-------c-CCccccCCCHHHHHHHHH
Confidence 332 145554443332222233333333 2223345443332 1 0 11 2344567788888
Q ss_pred HHhhCCCCEEEECCC
Q 017159 281 LLLVRAVNAVIIGSD 295 (376)
Q Consensus 281 ~L~~~gaDaVILGCT 295 (376)
.+.++|-=-||=||-
T Consensus 281 ~f~~~g~vnIvGGCC 295 (311)
T COG0646 281 EFAEEGGVNIVGGCC 295 (311)
T ss_pred HHHHhCCceeecccc
Confidence 888887446888984
No 257
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.58 E-value=2.5e+02 Score=25.86 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=42.5
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc---------------------HHHHHHHHHHhcCCCCcCC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV---------------------GECVAKELKEAKLKPLEAG 214 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I---------------------veat~~~~~~~g~k~~~~~ 214 (376)
.+.|...++|.|++...... ..++.+.+ -++|++.+ ....++.+.+.- .
T Consensus 53 ~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~-~gIpvV~~d~~~~~~~~~~~~V~~d~~~~g~~aa~~l~~~~------~ 125 (274)
T cd06311 53 QDLLINRKIDALVILPFESAPLTQPVAKAKK-AGIFVVVVDRGLSSPGAQDLYVAGDNYGMGRVAGEYIATKL------G 125 (274)
T ss_pred HHHHHHcCCCEEEEeCCCchhhHHHHHHHHH-CCCeEEEEcCCCCCCcccceEEcCCcHHHHHHHHHHHHHHh------C
Confidence 34566788998887654322 23444433 35665432 122344455440 1
Q ss_pred CCceEEEeecchhh----chHHHHHHHHhcCCcee
Q 017159 215 SGVRIGVLATDATL----SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 215 ~~~rVGlLaT~~T~----~s~~Y~~~L~~~G~evv 245 (376)
..++|++++..... +..-|.+.+++++++++
T Consensus 126 g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~ 160 (274)
T cd06311 126 GNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKIL 160 (274)
T ss_pred CCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEE
Confidence 23589988643221 12337778888886554
No 258
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=44.54 E-value=85 Score=31.95 Aligned_cols=68 Identities=10% Similarity=0.168 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCC---eeccHH---HHHHHHHHhcCCCCcCCCCceEEEe
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIP---FLHVGE---CVAKELKEAKLKPLEAGSGVRIGVL 222 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vP---vl~Ive---at~~~~~~~g~k~~~~~~~~rVGlL 222 (376)
+...+-+...++.....|.+.+|++.- ..-.+..++..++| ++.+.+ .+.+.+++.|++ +|-++
T Consensus 183 ~a~~~si~~~l~va~a~g~~~vvl~~G--~~ge~~a~~~~~l~~~~~V~~gnfiG~~L~~A~~~g~~--------~i~l~ 252 (361)
T PRK00075 183 EAYLASIKQELDVARANGLDHVVLVTG--NNGEDYARKLLGLPEDAIIKMGNFVGPMLKAAARLGVK--------KVLLV 252 (361)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEccC--hHHHHHHHHhcCCChhhEEEeehhHHHHHHHHHHcCCC--------EEEEE
Confidence 556666666666666789998877653 23355555544555 565544 456666666654 78777
Q ss_pred ecch
Q 017159 223 ATDA 226 (376)
Q Consensus 223 aT~~ 226 (376)
|=.+
T Consensus 253 G~~G 256 (361)
T PRK00075 253 GHPG 256 (361)
T ss_pred eeHH
Confidence 7655
No 259
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=44.48 E-value=27 Score=34.29 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhH-----------HHHhccCCCCee-----ccHHHHHHHHHHhcC
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAWH-----------GDVSEGCSIPFL-----HVGECVAKELKEAKL 208 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~~-----------d~L~~~~~vPvl-----~Iveat~~~~~~~g~ 208 (376)
.++.+|.++-|+|+++++.-|+|=.| ++|++.+++|++ ++-+.-.+.+.+.|.
T Consensus 158 e~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi 226 (284)
T PRK12857 158 EEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGV 226 (284)
T ss_pred HHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCC
Confidence 34456677889999999999999754 345555566643 334444444555554
No 260
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=44.39 E-value=88 Score=31.25 Aligned_cols=164 Identities=18% Similarity=0.146 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH--HHHHHHHHHhcCCCCcCCCCceEEEeecc-
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG--ECVAKELKEAKLKPLEAGSGVRIGVLATD- 225 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv--eat~~~~~~~g~k~~~~~~~~rVGlLaT~- 225 (376)
+.|...+ .++.|+.+|+|-|+-- -.| .++++..+++|+-|+- +..+++++..+ . .. ..-|++-+
T Consensus 106 epIsakl--vA~lL~~aG~drv~Tv--DlH--~~qiqgfFdipvdnl~a~p~l~~~~~~~~-~----~~--d~vVVSPD~ 172 (314)
T COG0462 106 EPISAKL--VANLLETAGADRVLTV--DLH--APQIQGFFDIPVDNLYAAPLLAEYIREKY-D----LD--DPVVVSPDK 172 (314)
T ss_pred CCEeHHH--HHHHHHHcCCCeEEEE--cCC--chhhcccCCCccccccchHHHHHHHHHhc-C----CC--CcEEECCCc
Confidence 4454444 3567899999988632 245 4789999999998874 33455555542 1 11 23344432
Q ss_pred -hhhchHHHHHHHHhcCCceeecCcccc-c---cchHHHHHHHhcC------ChHHHHHHHHHHHHHHhhCCCCEEEECC
Q 017159 226 -ATLSAGFYQEKLQNQGFEVVLPDKATM-E---HVIIPTIEALNHR------DMEGARNLLRIGIQLLLVRAVNAVIIGS 294 (376)
Q Consensus 226 -~T~~s~~Y~~~L~~~G~evv~p~~~~q-~---~~l~~~ie~lk~G------~~~~a~~~l~~~i~~L~~~gaDaVILGC 294 (376)
+.-+...+.+.| |.++-+-++.-+ . -.++.++-+++.. ++-.+...+-++.+.|.++||.-|+..|
T Consensus 173 Ggv~RAr~~A~~L---~~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~ 249 (314)
T COG0462 173 GGVKRARALADRL---GAPLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAA 249 (314)
T ss_pred cHHHHHHHHHHHh---CCCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEE
Confidence 223333444444 433333332221 1 1122223333311 1111344667777889999999999999
Q ss_pred Ccccccc-------CC-C------C--CC-------CCeeeehHHHHHHHHHHHHHh
Q 017159 295 DEMQGVL-------PK-D------D--PL-------LKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 295 TElpll~-------~~-~------~--~~-------~vpvIDp~~~lA~a~v~~a~~ 328 (376)
||--+.- +. . + +. .+..||-+..+|+++.+....
T Consensus 250 tH~vfs~~a~~~l~~~~i~~vivTnTi~~~~~~~~~~~~~isva~liaeaI~ri~~~ 306 (314)
T COG0462 250 THGVFSGAALERLEASAIDEVIVTDTIPLPEKKKIPKVSVISVAPLIAEAIRRIHNG 306 (314)
T ss_pred EchhhChHHHHHHhcCCCCEEEEeCCcccccccccCceEEEEhHHHHHHHHHHHHcC
Confidence 9954321 00 0 0 11 356788888888887776543
No 261
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=44.38 E-value=1.2e+02 Score=26.87 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=43.8
Q ss_pred ccccCCCCCccCCCCCCCcccccccCCCcc----cccc--cCCeEEEEcCCChHHHHHHHHHHHHHhhhC----CCCCCC
Q 017159 47 GQSHESGSLHESRKFPGSAAASLLRSKSPD----SLLN--QANTIGIIGGVSVSSTLNFLGKLVWYSAKD----AEECPP 116 (376)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~----dq~~~p 116 (376)
.-.|+.|+..+.-++..+.... ....... .||. +...|+| ||.+..+. .+++.|.+.+.+. ....++
T Consensus 24 v~ld~~G~v~d~~~~~~~~~~~-~~~~~~~~~l~~~i~~~kP~vI~v-~g~~~~s~-~l~~~v~~~v~~~~~~~~~~~i~ 100 (150)
T PF14639_consen 24 VVLDENGEVLDHLKLVYNERDR-ERKEEDMERLKKFIEKHKPDVIAV-GGNSRESR-KLYDDVRDIVEELDEDEQMPPIP 100 (150)
T ss_dssp EEE-TTS-EEEEEEE-S-TT-S-S-SHHHHHHHHHHHHHH--SEEEE---SSTHHH-HHHHHHHHHHHHTTB-TTS-B--
T ss_pred EEECCCCcEEEEEEEcCCccch-HHHHHHHHHHHHHHHHcCCeEEEE-cCCChhHH-HHHHHHHHHHHHhhhcccCCCce
Confidence 3468888866665551111110 1111111 1443 5667888 88886555 7777777766531 234678
Q ss_pred eEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHHH
Q 017159 117 FVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLEQ 164 (376)
Q Consensus 117 ~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~~ 164 (376)
+++.++. ++ ++-..| ... ..+.|- .+.++.+....+++|++
T Consensus 101 V~~v~~~-~A-~lY~~S-~rA-~~EFP~---~p~~~R~AIslAR~lQd 141 (150)
T PF14639_consen 101 VVIVDDE-VA-RLYSNS-KRA-AEEFPD---YPPLLRYAISLARYLQD 141 (150)
T ss_dssp EEE---T-TH-HHHHTS-HHH-HHHSTT-----HHHHHHHHHHHHHH-
T ss_pred EEEECcH-HH-HHHhcC-HHH-HHHCCC---CCHHHHHHHHHHHHhhC
Confidence 7766643 22 222222 000 011221 14566666677777654
No 262
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=44.28 E-value=23 Score=35.45 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=28.5
Q ss_pred CCcEEEEeCCCchhh-------HHHHhccCCCCeeccHHHHHHHH
Q 017159 166 GARCIVMPCHISHAW-------HGDVSEGCSIPFLHVGECVAKEL 203 (376)
Q Consensus 166 Gad~IVIaCNTAH~~-------~d~L~~~~~vPvl~Iveat~~~~ 203 (376)
+++++.|+-||-|.= ...+...+++|+.+.+.-....+
T Consensus 287 ~a~Vvgi~lNtr~~dE~~are~~a~l~~efglP~~Dp~~~~~d~~ 331 (339)
T COG3367 287 NAKVVGIALNTRNLDEEEARELCAKLEAEFGLPVTDPLRFGEDVL 331 (339)
T ss_pred CCcEEEEEecccccChHHHHHHHHHHhhccCCccccccccchHHH
Confidence 499999999998852 33477788999988877555443
No 263
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=44.26 E-value=2.5e+02 Score=29.47 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=17.8
Q ss_pred ceEEEeecchhhc---hHHHHHHHHhcCCcee
Q 017159 217 VRIGVLATDATLS---AGFYQEKLQNQGFEVV 245 (376)
Q Consensus 217 ~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv 245 (376)
++|+++..+...- ...+++.+++.|+++.
T Consensus 188 k~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~ 219 (510)
T cd06364 188 NWVGTIAADDDYGRPGIEKFREEAEERDICID 219 (510)
T ss_pred eEEEEEEecCcchHHHHHHHHHHHHHCCcEEE
Confidence 3888886654322 2335566777787765
No 264
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=44.01 E-value=2.2e+02 Score=26.63 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=20.3
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc
Q 017159 160 AFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I 195 (376)
+.+.+.++|.|++.....+ .+++++++ .++||+.+
T Consensus 49 ~~~~~~~vdgiii~~~~~~~~~~~l~~l~~-~~ipvV~~ 86 (288)
T cd01538 49 ENMIAKGVDVLVIAPVDGEALASAVEKAAD-AGIPVIAY 86 (288)
T ss_pred HHHHHcCCCEEEEecCChhhHHHHHHHHHH-CCCCEEEE
Confidence 4466789998877543333 34566554 35665443
No 265
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=43.91 E-value=1.7e+02 Score=29.25 Aligned_cols=106 Identities=18% Similarity=0.265 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-.+.++|||+|. |+.-+. |-+.+.-+.+-+.|+. .|+||+=.+-.
T Consensus 143 D~Tl~~L~~~Als~A~AGADiVA-PSdMMD---------------GrV~aIR~aLd~~g~~--------~v~ImSYsaKy 198 (322)
T PRK13384 143 DATVENLVKQSVTAAKAGADMLA-PSAMMD---------------GQVKAIRQGLDAAGFE--------HVAILAHSAKF 198 (322)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEe-cccccc---------------cHHHHHHHHHHHCCCC--------CCceeehhHhh
Confidence 67778888888889999999664 554433 2234444455666764 68999988888
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-...+-... .+.. - + .+ ++...++.++++.... ++|||.|+.
T Consensus 199 aS~fYGPFRdAa~Sap~----gDrk--s---Y-Qm---dp~n~~eAlre~~~D~-~EGAD~lMV 248 (322)
T PRK13384 199 ASSFYGPFRAAVDCELS----GDRK--S---Y-QL---DYANGRQALLEALLDE-AEGADILMV 248 (322)
T ss_pred hhhhcchHHHHhcCCCC----CCcc--c---c-cC---CCCCHHHHHHHHHhhH-hhCCCEEEE
Confidence 89998876555554321 1111 0 1 11 1112345566655444 468887654
No 266
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=43.87 E-value=35 Score=34.57 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh--HHHHhcc-----CCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAW--HGDVSEG-----CSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~-----~~vPvl 193 (376)
+.+..|+++|||.+=+++++.... +.+|++. +++|++
T Consensus 35 ~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlV 78 (359)
T PF04551_consen 35 AQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLV 78 (359)
T ss_dssp HHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EE
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCee
Confidence 345669999999999999998776 8888888 899976
No 267
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=43.67 E-value=3.6e+02 Score=27.26 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=47.3
Q ss_pred eEEEeecchhhchHHHHHHHHhcCCcee-ecCccccccchHHHHHHHhc-CCh----HH--HHHHHHHHHHHHhhCCC-C
Q 017159 218 RIGVLATDATLSAGFYQEKLQNQGFEVV-LPDKATMEHVIIPTIEALNH-RDM----EG--ARNLLRIGIQLLLVRAV-N 288 (376)
Q Consensus 218 rVGlLaT~~T~~s~~Y~~~L~~~G~evv-~p~~~~q~~~l~~~ie~lk~-G~~----~~--a~~~l~~~i~~L~~~ga-D 288 (376)
-|.++.|++-.. .-+.|+..++... +++-++-. .++++-+.+ |+. .+ ....+.++++.+.+.|. |
T Consensus 103 Gi~~~SSPfd~~---svd~l~~~~~~ayKIaS~E~~~---~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~ 176 (347)
T COG2089 103 GIIFFSSPFDLT---AVDLLESLNPPAYKIASGEIND---LPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPD 176 (347)
T ss_pred CeEEEecCCCHH---HHHHHHhcCCCeEEecCccccC---hHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCC
Confidence 477888888544 5778888887776 44444332 355665543 331 11 24567777777877654 6
Q ss_pred EEEECCC-ccc
Q 017159 289 AVIIGSD-EMQ 298 (376)
Q Consensus 289 aVILGCT-Elp 298 (376)
.++|-|| .||
T Consensus 177 i~LLhC~s~YP 187 (347)
T COG2089 177 IALLHCTSAYP 187 (347)
T ss_pred eEEEEecCCCC
Confidence 9999996 455
No 268
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=43.58 E-value=2.6e+02 Score=25.48 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=74.5
Q ss_pred HHHHHcCCcEEEE-eCCCchhhHHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 160 AFLEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 160 ~~L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rVG 220 (376)
+.|.+.++|.|++ +|+.....+..+.+ .++|++-+ ....++.+.+.|.+ +|+
T Consensus 45 ~~l~~~~vdgii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g~~--------~i~ 115 (261)
T cd06272 45 DLFKENRFDGVIIFGESASDVEYLYKIK-LAIPVVSYGVDYDLKYPIVNVDNEKAMELAVLYLAEKGHK--------KIA 115 (261)
T ss_pred HHHHHcCcCEEEEeCCCCChHHHHHHHH-cCCCEEEEcccCCCCCCEEEEChHHHHHHHHHHHHHcCch--------hEE
Confidence 3466678997764 45543333444432 33443322 23455666666653 899
Q ss_pred Eeecchh--h---chHHHHHHHHhcCCce----eecCccccccchHHHHHHH-hcCC-hHH----HHHHHHHHHHHHhhC
Q 017159 221 VLATDAT--L---SAGFYQEKLQNQGFEV----VLPDKATMEHVIIPTIEAL-NHRD-MEG----ARNLLRIGIQLLLVR 285 (376)
Q Consensus 221 lLaT~~T--~---~s~~Y~~~L~~~G~ev----v~p~~~~q~~~l~~~ie~l-k~G~-~~~----a~~~l~~~i~~L~~~ 285 (376)
+++.... . +..-|++.++++|+++ +.......+. ....+..+ .++. .+. .......+++.+.+.
T Consensus 116 ~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~ 194 (261)
T cd06272 116 YIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLSAEG-GDNAAKKLLKESDLPTAIICGSYDIALGVLSALNKQ 194 (261)
T ss_pred EeecccccccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCCHHH-HHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHHHHh
Confidence 9975432 1 1223777888888532 1111111110 11122222 2221 110 112223344555555
Q ss_pred CC----CEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 286 AV----NAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 286 ga----DaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
|. |.-|+|+-..+... ...+ .+..|+ +...+++++++.+.+.
T Consensus 195 g~~vp~dv~vvg~d~~~~~~-~~~~-~lttv~~~~~~~g~~a~~~l~~~ 241 (261)
T cd06272 195 GISIPEDIEIISYDNIPQMA-IIDP-PLTAVDVPIEEIAKKSLELLLKL 241 (261)
T ss_pred CCCCCCceEEEeeCChhHHh-hcCC-CCceeeccHHHHHHHHHHHHHHH
Confidence 53 77788877766543 1111 123343 3456677777666543
No 269
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.52 E-value=2.1e+02 Score=29.46 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=45.3
Q ss_pred cCCcEEEEeCC--Cchh----hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHH
Q 017159 165 AGARCIVMPCH--ISHA----WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKL 237 (376)
Q Consensus 165 ~Gad~IVIaCN--TAH~----~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L 237 (376)
.++|.||..-- ..|+ .+.+.++ .++|+++=.+...+.++.... ..+.|||=||.| |--+.+....|
T Consensus 64 ~~~d~vv~sp~i~~~~~~~~~~v~~a~~-~gi~i~~~~~~~~~~~~~~~~------~~~vI~VTGT~GKTTTt~ll~~iL 136 (460)
T PRK01390 64 SGFAALVLSPGVPLTHPKPHWVVDLARA-AGVEVIGDIELFCRERRAHAP------DAPFIAITGTNGKSTTTALIAHIL 136 (460)
T ss_pred cCCCEEEECCCCCccCCcccHHHHHHHH-cCCcEEeHHHHHHHHhhccCC------CCCEEEEeCCCcHHHHHHHHHHHH
Confidence 36888875331 1233 4555543 589999977665543332111 124799999988 33345677778
Q ss_pred HhcCCceeec
Q 017159 238 QNQGFEVVLP 247 (376)
Q Consensus 238 ~~~G~evv~p 247 (376)
+..|..+...
T Consensus 137 ~~~g~~~~~~ 146 (460)
T PRK01390 137 REAGRDVQMG 146 (460)
T ss_pred HhcCCCeEEc
Confidence 8777766543
No 270
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=43.31 E-value=1.9e+02 Score=25.07 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhcccccc--CcchHHHHHHHHHHHHHHHHH--c
Q 017159 90 GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQ--LDHIRGAVSQNLRHKRAFLEQ--A 165 (376)
Q Consensus 90 GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~--~~~~~~~i~~~l~~~~~~L~~--~ 165 (376)
|+|+..|..+..++-+.........+++|++.-- ..+......+ .+. +++.+.+.+.++.+.+ .
T Consensus 39 g~~G~t~~~~~~~~~~~~~~~~~~~pd~vii~~G----------~ND~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~ 106 (199)
T cd01838 39 GFSGYNTRWALKVLPKIFLEEKLAQPDLVTIFFG----------ANDAALPGQPQHVPL--DEYKENLRKIVSHLKSLSP 106 (199)
T ss_pred CCCcccHHHHHHHHHHhcCccccCCceEEEEEec----------CccccCCCCCCcccH--HHHHHHHHHHHHHHHhhCC
Confidence 7888878777766655443322236777766421 1111000000 122 6677778888888877 6
Q ss_pred CCcEEEEeC
Q 017159 166 GARCIVMPC 174 (376)
Q Consensus 166 Gad~IVIaC 174 (376)
++.+|++..
T Consensus 107 ~~~ii~~t~ 115 (199)
T cd01838 107 KTKVILITP 115 (199)
T ss_pred CCeEEEeCC
Confidence 888777743
No 271
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=42.62 E-value=29 Score=34.04 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWH 181 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~ 181 (376)
++.+|.++.|+|+++++.-|+|=.|
T Consensus 159 ea~~Fv~~TgvD~LAvaiGt~HG~y 183 (284)
T PRK09195 159 QAREFVEATGIDSLAVAIGTAHGMY 183 (284)
T ss_pred HHHHHHHHHCcCEEeeccCcccccc
Confidence 3445667889999999999999764
No 272
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=42.13 E-value=2.6e+02 Score=25.24 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=42.1
Q ss_pred HHHHHcCCcEEEEeCCCchh-hHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPCHISHA-WHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.|++.-..... .++++++ .++|++.+ ....++++.+.|. ++|
T Consensus 49 ~~l~~~~~dgiii~~~~~~~~~l~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~i 119 (267)
T cd06283 49 ESLLAYQVDGLIVNPTGNNKELYQRLAK-NGKPVVLVDRKIPELGVDTVTLDNYEAAKEAVDHLIEKGY--------ERI 119 (267)
T ss_pred HHHHHcCcCEEEEeCCCCChHHHHHHhc-CCCCEEEEcCCCCCCCCCEEEeccHHHHHHHHHHHHHcCC--------CcE
Confidence 44667899988774332222 2555543 35565443 2334566666654 389
Q ss_pred EEeecchh------hchHHHHHHHHhcCC
Q 017159 220 GVLATDAT------LSAGFYQEKLQNQGF 242 (376)
Q Consensus 220 GlLaT~~T------~~s~~Y~~~L~~~G~ 242 (376)
++++.+.. .+..-|.+.++++|+
T Consensus 120 ~~l~~~~~~~~~~~~r~~g~~~~~~~~~~ 148 (267)
T cd06283 120 LFVTEPLDEISPRMERYEGFKEALAEHGI 148 (267)
T ss_pred EEEecCccccccHHHHHHHHHHHHHHcCC
Confidence 99864322 122337888888874
No 273
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.90 E-value=1.4e+02 Score=29.82 Aligned_cols=159 Identities=13% Similarity=0.053 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCe--eccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPF--LHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY 233 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPv--l~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y 233 (376)
+..++.|+..|+|.++.-= .|. ++++..+++|+ +..++..++++++.+++ ...+-|++.... ...+.
T Consensus 116 k~~a~lL~~~g~d~vitvD--~H~--~~i~~~F~~p~~nl~~~p~~~~~l~~~~~~------~~~~vvV~pd~G-a~~~A 184 (323)
T PRK02458 116 KLVANMLVKAGVDRVLTLD--LHA--VQVQGFFDIPVDNLFTVPLFAKHYCKKGLS------GSDVVVVSPKNS-GIKRA 184 (323)
T ss_pred HHHHHHHhhcCCCeEEEEe--cCc--HHhhccccCCceEEEEHHHHHHHHHHhCCC------CCceEEEEECCC-hHHHH
Confidence 3345678888999876543 463 56777777775 44566677777665442 124555555432 11222
Q ss_pred HHHHHhcCCceeecCcccc--ccchHHHHHHHhcCC-------hHHHHHHHHHHHHHHhhCCCCEEEECCCcccccc---
Q 017159 234 QEKLQNQGFEVVLPDKATM--EHVIIPTIEALNHRD-------MEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVL--- 301 (376)
Q Consensus 234 ~~~L~~~G~evv~p~~~~q--~~~l~~~ie~lk~G~-------~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~--- 301 (376)
+...+..|..+.+-+.... ......+..+++ |. +-.+...+.++.+.|.+.||..|.+.|||-=+.-
T Consensus 185 ~~la~~L~~~~~~~~~~r~~~~~~~~~i~gdV~-gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a~ 263 (323)
T PRK02458 185 RSLAEYLDAPIAIIDYAQDDSEREEGYIIGDVA-GKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGAA 263 (323)
T ss_pred HHHHHHhCCCEEEEEEecCCCcceeeccccccC-CCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchHH
Confidence 3333333555443221100 000001111222 21 1113567888889999999999999999943221
Q ss_pred ----CC-C------C--------CCCCeeeehHHHHHHHHHHHH
Q 017159 302 ----PK-D------D--------PLLKKCIDPMDALARSTVTWA 326 (376)
Q Consensus 302 ----~~-~------~--------~~~vpvIDp~~~lA~a~v~~a 326 (376)
+. . + +..+.+||-...+|+++.+..
T Consensus 264 ~~l~~s~i~~iv~TdTi~~~~~~~~k~~~isva~lla~~i~~~~ 307 (323)
T PRK02458 264 EVLENAPIKEILVTDSVATKERVPKNVTYLSASELIADAIIRIH 307 (323)
T ss_pred HHHhhCCCCEEEEECCcCCchhcCCCcEEEEhHHHHHHHHHHHH
Confidence 10 0 0 112457888888888765443
No 274
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=41.84 E-value=1.8e+02 Score=26.60 Aligned_cols=53 Identities=23% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCcEEEEeCC---Cchhh--HHHHhccCCCCeecc---HHH-HHHHHHHhcCC
Q 017159 157 HKRAFLEQAGARCIVMPCH---ISHAW--HGDVSEGCSIPFLHV---GEC-VAKELKEAKLK 209 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCN---TAH~~--~d~L~~~~~vPvl~I---vea-t~~~~~~~g~k 209 (376)
+.++..++.||++|-+.+- ..+.+ ++.+++.+++||+-. .+. -++.+.+.|..
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad 96 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGAD 96 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCC
Confidence 3456678899999965421 11122 677788889998832 233 46667777654
No 275
>PRK14982 acyl-ACP reductase; Provisional
Probab=41.76 E-value=2.7e+02 Score=28.07 Aligned_cols=96 Identities=10% Similarity=0.112 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhc----cC-CCCeec------------c-HHHHHHHHHHhcCCC
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSE----GC-SIPFLH------------V-GECVAKELKEAKLKP 210 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~----~~-~vPvl~------------I-veat~~~~~~~g~k~ 210 (376)
+...+.+.++++.+++.|++...++-.|. ...+.... .+ ++.+=. + .+++-......+..
T Consensus 75 ~~~~~~~~~a~~~a~~~G~~i~~Lg~~ts-iv~~~~~~~~~~~~r~i~ie~~~~TtGNs~T~~ll~~~V~la~~~lg~~- 152 (340)
T PRK14982 75 KTARRKVLNAMALAQKKGINITALGGFSS-IIFENFNLLQHKQVRNTTLEWERFTTGNTHTAYVICRQVEQNAPRLGID- 152 (340)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEcCChHH-HhcCCcccccccccccceeccccccCCchhHHHHHHHHHHHhHHHhccC-
Confidence 34557788888999999999999999884 22222111 11 122200 1 12222222333321
Q ss_pred CcCCCCceEEEeecchhhchHHHHHHHHhcCC-ceeecCc
Q 017159 211 LEAGSGVRIGVLATDATLSAGFYQEKLQNQGF-EVVLPDK 249 (376)
Q Consensus 211 ~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~G~-evv~p~~ 249 (376)
-.+++|.|+|..|.|-+.+-+...+..|. ++++.+.
T Consensus 153 ---l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 153 ---LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred ---cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 24579999999888887766555455564 5555544
No 276
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=41.66 E-value=1.4e+02 Score=22.05 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCceeecC-ccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCc
Q 017159 231 GFYQEKLQNQGFEVVLPD-KATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 231 ~~Y~~~L~~~G~evv~p~-~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTE 296 (376)
..+...++..|+++..+. ..|=. .. ....|..+.+.+..++.++.+.+.++|.||..|..
T Consensus 19 ~~~~~l~~~~g~~~~~~~~~~CCG--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 79 (85)
T PF02754_consen 19 KALRKLLNKLGIEVVIPENQQCCG--AP----GYFAGDEELAEKVAKRNLKEIKEAGADTIVTPCPS 79 (85)
T ss_pred HHHHHHHHHcCceeeecCCCCCCC--hH----HHHcCchhhHHHHHHHHHHHHHHcCCCEEEEeChh
Confidence 346677788899998872 12211 10 11223333456667777777777899999999963
No 277
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=41.66 E-value=1.1e+02 Score=29.80 Aligned_cols=104 Identities=10% Similarity=0.094 Sum_probs=56.5
Q ss_pred cCCeEEEEc-CCChHHHHHHHHHHHHHhhhCC-CCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 81 QANTIGIIG-GVSVSSTLNFLGKLVWYSAKDA-EECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 81 ~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~d-q~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
++++|+|++ |-|.- ++.|.+....++ ...+..|+.|+++.......++.|...-...+.+. ++. -.+.
T Consensus 88 ~~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~--~~~---~~~~ 157 (286)
T PRK06027 88 ERKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETK--AEA---EARL 157 (286)
T ss_pred cCcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCcccc--chh---HHHH
Confidence 567899998 66554 777777766543 24566677777766543222233332101001111 111 1223
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
.+.|++.++|+||++-.. ...-+.+-+.+.-.++|+
T Consensus 158 ~~~l~~~~~Dlivlagy~-~il~~~~l~~~~~~iiNi 193 (286)
T PRK06027 158 LELIDEYQPDLVVLARYM-QILSPDFVARFPGRIINI 193 (286)
T ss_pred HHHHHHhCCCEEEEecch-hhcCHHHHhhccCCceec
Confidence 456788999999998753 444344444444455555
No 278
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=41.48 E-value=43 Score=30.08 Aligned_cols=46 Identities=24% Similarity=0.200 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHhcCCCCcCCCCceEEEeecchh-hchHHHHHHHHhcCCceeec
Q 017159 194 HVGECVAKELKEAKLKPLEAGSGVRIGVLATDAT-LSAGFYQEKLQNQGFEVVLP 247 (376)
Q Consensus 194 ~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T-~~s~~Y~~~L~~~G~evv~p 247 (376)
.=++++++.+++.|++ ||||-.=-+. -+++.+.+.|+.+|++++-.
T Consensus 41 tRveEiieFak~mgyk--------kiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 41 TRVEEIIEFAKRMGYK--------KIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred chHHHHHHHHHHcCCC--------eeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 3478999999999987 9995333333 34677999999999998754
No 279
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=41.41 E-value=1.6e+02 Score=30.78 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=83.6
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCC--CCeecc--HHHHHHHHHHhcCCCCcCCCCceEEEeecchh--hchH
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCS--IPFLHV--GECVAKELKEAKLKPLEAGSGVRIGVLATDAT--LSAG 231 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~--vPvl~I--veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T--~~s~ 231 (376)
.++.|+.+|+|.++.-- .|. ++++.-++ +|+.++ ....++.++.... ...-|++-+.. -+..
T Consensus 228 vA~lL~~~G~d~VitvD--lHs--~~i~~fF~~~iPvdnl~a~~~~a~~i~~~~l--------~~pVVVsPD~Ga~~RAr 295 (439)
T PTZ00145 228 VARMIEAMGVDRVVAID--LHS--GQIQGFFGPRVPVDNLEAQLIGLDYFTKKDL--------YKPVIVSPDAGGVYRAR 295 (439)
T ss_pred HHHHHHHcCCCeEEEEe--cCh--HHHHhhcCCCcccccccccHHHHHHHhhcCC--------CccEEEccCcchHHHHH
Confidence 45678888999876543 453 45666664 787765 3345566644322 14556776633 2344
Q ss_pred HHHHHHHhcC-----CceeecCc--cccccchHHHHHHHhcC------ChHHHHHHHHHHHHHHhhCCCCEEEECCCccc
Q 017159 232 FYQEKLQNQG-----FEVVLPDK--ATMEHVIIPTIEALNHR------DMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQ 298 (376)
Q Consensus 232 ~Y~~~L~~~G-----~evv~p~~--~~q~~~l~~~ie~lk~G------~~~~a~~~l~~~i~~L~~~gaDaVILGCTElp 298 (376)
.|++.|...| +.++.-.. +.+.. .+..+.+++.. ++-.+...+.++.+.|.+.||..|...|||--
T Consensus 296 ~~A~~L~~~~~~~~~~avl~K~R~~~~~v~-~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~~THgl 374 (439)
T PTZ00145 296 KFQDGLNHRGISDCGIAMLIKQRTKPNEIE-KMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGL 374 (439)
T ss_pred HHHHHhccccccCCCEEEEEeecCCCCceE-EEeccCCCCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEEEEccc
Confidence 5777775322 22221110 00100 11111122211 11123566888889999999999999999954
Q ss_pred cccC-------C-C------CC----------CCCeeeehHHHHHHHHHHH
Q 017159 299 GVLP-------K-D------DP----------LLKKCIDPMDALARSTVTW 325 (376)
Q Consensus 299 ll~~-------~-~------~~----------~~vpvIDp~~~lA~a~v~~ 325 (376)
+.-+ . . +. ..+.+||-...+|+++.+.
T Consensus 375 fs~~A~~rl~~s~i~~IvvTdTIp~~~~~~~~~k~~visVA~llAeaI~~i 425 (439)
T PTZ00145 375 FSGPAIERIEASPLEEVVVTDTVKSNKNIDSCKKITKLSVSVLVADAIRRI 425 (439)
T ss_pred CChhHHHHHhcCCCCEEEEeCCCcCchhhcccCCeEEEEhHHHHHHHHHHH
Confidence 3211 0 0 11 1245788888888877553
No 280
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=41.40 E-value=2.2e+02 Score=27.69 Aligned_cols=118 Identities=8% Similarity=-0.029 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCcEE-EEeCCC--c--hhhHHHHhccCCCCe-----eccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 157 HKRAFLEQAGARCI-VMPCHI--S--HAWHGDVSEGCSIPF-----LHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 157 ~~~~~L~~~Gad~I-VIaCNT--A--H~~~d~L~~~~~vPv-----l~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
+.++.+++.|++.+ |+=.+. . ...+.+|.+ +++|| |. . +.++.+...|.. ||- ++|.+
T Consensus 47 ~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~-~~~~vqvGGGIR-~-e~i~~~l~~Ga~--------rVi-igT~A 114 (262)
T PLN02446 47 EFAEMYKRDGLTGGHVIMLGADDASLAAALEALRA-YPGGLQVGGGVN-S-ENAMSYLDAGAS--------HVI-VTSYV 114 (262)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHh-CCCCEEEeCCcc-H-HHHHHHHHcCCC--------EEE-EchHH
Confidence 34566788999877 443332 1 223666766 66665 33 2 566677777764 776 68877
Q ss_pred hhc----hHHHHHHHHhcCCceeecCcccc--cc--chHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 227 TLS----AGFYQEKLQNQGFEVVLPDKATM--EH--VIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 227 T~~----s~~Y~~~L~~~G~evv~p~~~~q--~~--~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
--. ..+.++.++.+|-+.++.+.++. +. .+ .+ .|-.+.+.-.+.+.+..+.+.+++.+|+
T Consensus 115 v~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~V-----a~-~GW~~~t~~~~~e~~~~~~~~g~~eii~ 182 (262)
T PLN02446 115 FRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYV-----VT-DRWQKFSDLAVDEETLEFLAAYCDEFLV 182 (262)
T ss_pred HhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEE-----EE-CCCcccCCCCHHHHHHHHHHhCCCEEEE
Confidence 655 78899999999877777766554 21 11 01 1222222233445555666778888874
No 281
>PLN02591 tryptophan synthase
Probab=41.25 E-value=3.3e+02 Score=26.13 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=12.8
Q ss_pred HHHHHHcCCcEEEEe
Q 017159 159 RAFLEQAGARCIVMP 173 (376)
Q Consensus 159 ~~~L~~~Gad~IVIa 173 (376)
.+.+.++|+|.++||
T Consensus 99 ~~~~~~aGv~Gviip 113 (250)
T PLN02591 99 MATIKEAGVHGLVVP 113 (250)
T ss_pred HHHHHHcCCCEEEeC
Confidence 456778999999999
No 282
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=41.22 E-value=2.9e+02 Score=25.43 Aligned_cols=121 Identities=12% Similarity=0.153 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecch--------hh--chHHHHHHHHhcCCc---eeecCccccccchHHHHHH-
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDA--------TL--SAGFYQEKLQNQGFE---VVLPDKATMEHVIIPTIEA- 262 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~--------T~--~s~~Y~~~L~~~G~e---vv~p~~~~q~~~l~~~ie~- 262 (376)
..+++++.+.|.+ +|++++... +. +..-|.+.++++|.. .+.......+. -...++.
T Consensus 101 ~~~~~~l~~~g~~--------~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 171 (270)
T cd01544 101 EKALDYLLELGHT--------RIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGLYDPELIYIGDFTVES-GYQLMKEA 171 (270)
T ss_pred HHHHHHHHHcCCC--------cEEEECCCcccccccchhhhHHHHHHHHHHHHcCCCChheEeeCCCCHHH-HHHHHHHH
Confidence 3456666666654 899997643 11 223378888888731 12221111110 1111222
Q ss_pred HhcC--C-hH----HHHHHHHHHHHHHhhCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 263 LNHR--D-ME----GARNLLRIGIQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 263 lk~G--~-~~----~a~~~l~~~i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
++.. . .+ ........+++.+.+.| -|.-|.|+...+.... ..+ .+..|+ +...+++.+++.+..
T Consensus 172 l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~~~~~~-~~p-~lttv~~~~~~~g~~a~~~l~~ 247 (270)
T cd01544 172 LKSLGDNLPTAFFIASDPMAIGALRALQEAGIKVPEDVSVISFNDIEVAKY-VSP-PLSTVKIDTEEMGETAVDLLLE 247 (270)
T ss_pred HhccCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECChhHHhh-cCC-CCceecCCHHHHHHHHHHHHHH
Confidence 2222 1 11 11223344445555544 3788999988775321 111 122222 234466666666644
No 283
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=41.16 E-value=91 Score=27.57 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=47.9
Q ss_pred ccccccCCeEEEEc-CCChHHHHHHHHHHHHHhhh----CCCCCCCeEeecCCcch--hHHhhhchhhhccccccCcchH
Q 017159 76 DSLLNQANTIGIIG-GVSVSSTLNFLGKLVWYSAK----DAEECPPFVVCNDPALN--EELFHASVHSLKSKTVQLDHIR 148 (376)
Q Consensus 76 ~~~~~~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~----~dq~~~p~il~s~p~ip--d~l~~~s~~~~~~~~~~~~~~~ 148 (376)
...|.+.++|=|+| |.+.....+|..++...-.. .|.. . +.+. |-++.-| .....
T Consensus 24 ~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-~-------~~~~~~Dv~I~iS-------~sG~t--- 85 (179)
T TIGR03127 24 ADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT-T-------PSIKKGDLLIAIS-------GSGET--- 85 (179)
T ss_pred HHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc-c-------CCCCCCCEEEEEe-------CCCCc---
Confidence 34566778999999 77777777777777653221 1211 0 1111 1111111 00111
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhH
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWH 181 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~ 181 (376)
.+ +.+.++.+.+.|+..|+|..+..++..
T Consensus 86 ~~----~i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 86 ES----LVTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred HH----HHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 34 344556788899999999998877654
No 284
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=41.15 E-value=2.7e+02 Score=27.63 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=19.5
Q ss_pred HHHHcCCcEEEEeCCCchh-hHHHHhccCCCCeec
Q 017159 161 FLEQAGARCIVMPCHISHA-WHGDVSEGCSIPFLH 194 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~ 194 (376)
.+.+.|+.+|+=|.++.-. ..-.+.+..++|+|+
T Consensus 68 ~~~~~~v~aiiGp~~S~~~~av~~~~~~~~ip~Is 102 (396)
T cd06373 68 LYFQHKPDAFLGPGCEYAAAPVARFAAHWNVPVLT 102 (396)
T ss_pred HHhccCCeEEECCCccchhHHHHHHHhcCCCceEC
Confidence 3445578777655544322 244555666777775
No 285
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=41.12 E-value=3.4e+02 Score=27.47 Aligned_cols=29 Identities=7% Similarity=0.258 Sum_probs=17.9
Q ss_pred ceEEEeecchhh---chHHHHHHHHhcCCcee
Q 017159 217 VRIGVLATDATL---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 217 ~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv 245 (376)
++|+++...... ....+.+.+++.|+++.
T Consensus 173 ~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~ 204 (452)
T cd06362 173 TYVSTVASEGNYGEKGIEAFEKLAAERGICIA 204 (452)
T ss_pred cEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEE
Confidence 488888765432 22335667777787765
No 286
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.93 E-value=2e+02 Score=24.11 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=49.7
Q ss_pred ccccCCeEEEEc-CCChHHHHHHHHHHHHHhh-h------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHH
Q 017159 78 LLNQANTIGIIG-GVSVSSTLNFLGKLVWYSA-K------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRG 149 (376)
Q Consensus 78 ~~~~~k~IGIIG-GmGp~AT~~f~~kI~~~~~-~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~ 149 (376)
.+.+.+.|=++| |.+.....++.-|+.+... . .+-.|-|+-..+.... ++.-+ . + .
T Consensus 9 ~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~---vi~is---------~-~---g 72 (153)
T cd05009 9 KLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTP---VIFLA---------P-E---D 72 (153)
T ss_pred HHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCc---EEEEe---------c-C---C
Confidence 455688999999 9999999999999988752 1 1222444332221100 00000 0 0 0
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCc
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMPCHIS 177 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIaCNTA 177 (376)
+-.+.+.+.++++.+.|+..++|..+.-
T Consensus 73 ~t~~~~~~~~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 73 RLEEKLESLIKEVKARGAKVIVITDDGD 100 (153)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 1112355566788889999999988753
No 287
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=40.82 E-value=3.2e+02 Score=25.82 Aligned_cols=51 Identities=10% Similarity=-0.008 Sum_probs=25.4
Q ss_pred HHHHHhhCCC--CEEEECCCccccccCCCCCCCC--eeeehHHHHHHHHHHHHHh
Q 017159 278 GIQLLLVRAV--NAVIIGSDEMQGVLPKDDPLLK--KCIDPMDALARSTVTWARS 328 (376)
Q Consensus 278 ~i~~L~~~ga--DaVILGCTElpll~~~~~~~~v--pvIDp~~~lA~a~v~~a~~ 328 (376)
+++.+.+.|. |.-|.|.-..+.......+..+ .+..+...+++.+++.+..
T Consensus 200 ~~~al~~~g~~~dv~vvG~D~~~~~~~~~~~g~i~~tv~~~~~~~g~~a~~~l~~ 254 (298)
T cd06302 200 AARAVEEAGLKGKVAVTGLGLPNQMAPYVKSGAVKEFALWNPADLGYAAVYVAKA 254 (298)
T ss_pred HHHHHHhcCCCCCEEEEEeCCCHHHHHHHhCCeeEEEEecCHHHHHHHHHHHHHH
Confidence 3444544443 7778888766643322221111 1223345566666666554
No 288
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=40.81 E-value=1.7e+02 Score=28.93 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCe--eccHHHHHHHHHHhcCCCCcCCCCceEEEeecchh--hchHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPF--LHVGECVAKELKEAKLKPLEAGSGVRIGVLATDAT--LSAGF 232 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPv--l~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T--~~s~~ 232 (376)
-.++.|+..|+|.++.- ..|. +.++.-+++|+ ++..+..++++.+.... ...+.|++.... ....-
T Consensus 99 ~va~lL~~~g~d~vi~v--DlHs--~~i~~~F~ip~~~l~~~~~~~~~i~~~~~~------~~~~vvVspd~gg~~~a~~ 168 (302)
T PLN02369 99 LVANLITEAGADRVLAC--DLHS--GQSMGYFDIPVDHVYGQPVILDYLASKTIS------SPDLVVVSPDVGGVARARA 168 (302)
T ss_pred HHHHHHHhcCCCEEEEE--ECCc--hHHhhccCCceecccchHHHHHHHHHhCCC------CCceEEEEECcChHHHHHH
Confidence 34566888899987765 4564 55667778888 45556677777654221 123545555332 11222
Q ss_pred HHHHHHhcCCceeecCcc----ccccchHHHHHHHhcCC-------hHHHHHHHHHHHHHHhhCCCCEEEECCCccc
Q 017159 233 YQEKLQNQGFEVVLPDKA----TMEHVIIPTIEALNHRD-------MEGARNLLRIGIQLLLVRAVNAVIIGSDEMQ 298 (376)
Q Consensus 233 Y~~~L~~~G~evv~p~~~----~q~~~l~~~ie~lk~G~-------~~~a~~~l~~~i~~L~~~gaDaVILGCTElp 298 (376)
+.+.+. +..+.+-+.. .... .......++ |. +-.+...+..+++.|.+.|+..|.+.|||-=
T Consensus 169 ~a~~l~--~~~~~~l~k~R~~~~~~~-~~~~~~~v~-g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v 241 (302)
T PLN02369 169 FAKKLS--DAPLAIVDKRRQGHNVAE-VMNLIGDVK-GKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAV 241 (302)
T ss_pred HHHHcC--CCCEEEEEEecCCcceee-eEecCCCCC-CCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeee
Confidence 334442 2222221111 0000 000011122 21 1113456777888898899999999999843
No 289
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=40.75 E-value=46 Score=32.72 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=20.0
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhH
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWH 181 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~ 181 (376)
+.++.++.|+|+++++.-|+|-.|
T Consensus 158 a~~Fv~~TgvD~LAvaiGt~HG~Y 181 (283)
T PRK07998 158 VKDFVERTGCDMLAVSIGNVHGLE 181 (283)
T ss_pred HHHHHHHhCcCeeehhccccccCC
Confidence 356677899999999999999754
No 290
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=40.66 E-value=1.4e+02 Score=31.21 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=36.7
Q ss_pred CCcCCCCceEEEeecchhhchHHHHHHHHhc--CCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCC-
Q 017159 210 PLEAGSGVRIGVLATDATLSAGFYQEKLQNQ--GFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRA- 286 (376)
Q Consensus 210 ~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~--G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~g- 286 (376)
|+|..+ ++|||+..+....-+-.-..+..+ .+++++.....| |+ ++...+.++++.+-+.+
T Consensus 130 pLP~~p-~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQ-------------G~--~A~~eIv~aI~~an~~~~ 193 (440)
T COG1570 130 PLPFFP-KKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQ-------------GE--GAAEEIVEAIERANQRGD 193 (440)
T ss_pred CCCCCC-CeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEecccc-------------CC--CcHHHHHHHHHHhhccCC
Confidence 444443 589999887543333333444443 455554433222 33 23344455555554444
Q ss_pred CCEEEECCC
Q 017159 287 VNAVIIGSD 295 (376)
Q Consensus 287 aDaVILGCT 295 (376)
+|++|+|=-
T Consensus 194 ~DvlIVaRG 202 (440)
T COG1570 194 VDVLIVARG 202 (440)
T ss_pred CCEEEEecC
Confidence 888888643
No 291
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=40.50 E-value=66 Score=25.28 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhcCCce
Q 017159 198 CVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEV 244 (376)
Q Consensus 198 at~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~G~ev 244 (376)
+.++.+.+.|++ |+||.+|. +.|++.|+++
T Consensus 4 ~~~~~l~~lG~~-----------i~AT~gTa------~~L~~~Gi~~ 33 (90)
T smart00851 4 ELAKRLAELGFE-----------LVATGGTA------KFLREAGLPV 33 (90)
T ss_pred HHHHHHHHCCCE-----------EEEccHHH------HHHHHCCCcc
Confidence 455667777664 78999982 4467789876
No 292
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.48 E-value=3.4e+02 Score=26.00 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=10.1
Q ss_pred CCCCeEeecCCcch
Q 017159 113 ECPPFVVCNDPALN 126 (376)
Q Consensus 113 ~~~p~il~s~p~ip 126 (376)
.-++|+...+|+..
T Consensus 11 ~li~y~~aG~P~~~ 24 (256)
T TIGR00262 11 AFIPFVTAGDPTLE 24 (256)
T ss_pred eEEEEEeCCCCCHH
Confidence 45788888888763
No 293
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=40.30 E-value=1.1e+02 Score=30.78 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH---HHHHhcCCceeecC
Q 017159 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ---EKLQNQGFEVVLPD 248 (376)
Q Consensus 195 Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~---~~L~~~G~evv~p~ 248 (376)
.++...+.++..+. +|+.|++-+...+.++++ +.|++.|+++.+.+
T Consensus 10 ~~~~l~~~~~~~~~--------~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~ 58 (375)
T cd08194 10 AVDETGAVLADLGG--------KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFD 58 (375)
T ss_pred HHHHHHHHHHHcCC--------CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEEC
Confidence 34455555665443 388888877776665555 55666788776543
No 294
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=40.12 E-value=1.1e+02 Score=31.26 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH---HHHHHhcCCceeecC
Q 017159 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY---QEKLQNQGFEVVLPD 248 (376)
Q Consensus 195 Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y---~~~L~~~G~evv~p~ 248 (376)
.++...+.+++.|.+ |+.|++.+...+.+.+ .+.|++.|+++.+.+
T Consensus 10 ~~~~l~~~l~~~g~~--------~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~ 58 (414)
T cd08190 10 VTAEVGMDLKNLGAR--------RVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYD 58 (414)
T ss_pred HHHHHHHHHHHcCCC--------eEEEEECcchhhcchHHHHHHHHHHcCCcEEEeC
Confidence 345555666665543 8888887776666554 455667788877654
No 295
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=40.12 E-value=53 Score=32.90 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHG 182 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d 182 (376)
++.+|.++.|+|+++++.-|+|=.|.
T Consensus 168 eA~~Fv~~TgvD~LAvaiGt~HG~Y~ 193 (321)
T PRK07084 168 EVEDFVKKTGVDSLAISIGTSHGAYK 193 (321)
T ss_pred HHHHHHHHhCCCEEeecccccccccc
Confidence 34466777899999999999997653
No 296
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=39.92 E-value=26 Score=31.01 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHH
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKE 202 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~ 202 (376)
++.|++.|++.+ .+|+.....+++.+++.-++.++..-.+....
T Consensus 8 ~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~ 52 (172)
T PF02776_consen 8 AEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAA 52 (172)
T ss_dssp HHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHH
T ss_pred HHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhH
Confidence 467889999855 89999888889999987678887776555433
No 297
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=39.89 E-value=3.2e+02 Score=25.59 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecchh-----hchHHHHHHHHhcCCceee----cCccccccchHHHHHHH-hcC
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDAT-----LSAGFYQEKLQNQGFEVVL----PDKATMEHVIIPTIEAL-NHR 266 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~evv~----p~~~~q~~~l~~~ie~l-k~G 266 (376)
..+++++.+.|. ++|++++.... .+..-|.+.++++|+++.. ......+. ....++.+ +.+
T Consensus 141 ~~a~~~l~~~G~--------~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 211 (309)
T PRK11041 141 FEAVNYLHELGH--------KRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDFTFEA-GAKALKQLLDLP 211 (309)
T ss_pred HHHHHHHHHcCC--------ceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCCCCHHH-HHHHHHHHHcCC
Confidence 345566666664 38999864322 1233377888888876421 11111111 11222332 222
Q ss_pred C-hHH----HHHHHHHHHHHHhhCCC----CEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 267 D-MEG----ARNLLRIGIQLLLVRAV----NAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 267 ~-~~~----a~~~l~~~i~~L~~~ga----DaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
. .+. .......+++.+.+.|. |.-|.|+-..+.... ..+ .+..|+ ....+++.+++.+...
T Consensus 212 ~~~~ai~~~~d~~a~gv~~al~~~g~~ip~di~vvg~D~~~~~~~-~~~-~~~ti~~~~~~~g~~av~~l~~~ 282 (309)
T PRK11041 212 QPPTAVFCHSDVMALGALSQAKRMGLRVPQDLSIIGFDDIDLAQY-CDP-PLTTVAQPRYEIGREAMLLLLEQ 282 (309)
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEeCCchhhhh-cCC-CceEEecCHHHHHHHHHHHHHHH
Confidence 1 111 11222234445555553 677888877764432 112 123343 4556777777776543
No 298
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=39.85 E-value=41 Score=33.32 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH--------HHH--HHHH-hcCCCCcCCCCceEEEee
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC--------VAK--ELKE-AKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea--------t~~--~~~~-~g~k~~~~~~~~rVGlLa 223 (376)
+.+.++-|.+.|+|+||+=.. .|..+.++.+..++||||..+- .+. .+.+ .|. -.+.||+++|
T Consensus 90 ~~Dta~vls~y~~D~iv~R~~-~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~G~-----l~g~kv~~vG 163 (305)
T PRK00856 90 LADTIRTLSAMGADAIVIRHP-QSGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIREEFGR-----LEGLKVAIVG 163 (305)
T ss_pred HHHHHHHHHhcCCCEEEEeCC-ChHHHHHHHHHCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCC-----CCCCEEEEEC
Confidence 566677899999999999987 4778889988899999998641 111 1222 221 1346999997
Q ss_pred cc---hhhchHHHHHHHHhcCCceeecCcc
Q 017159 224 TD---ATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 224 T~---~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
=- .|..| .-..+...|+++.+..+.
T Consensus 164 D~~~~~v~~S--l~~~~~~~g~~~~~~~P~ 191 (305)
T PRK00856 164 DIKHSRVARS--NIQALTRLGAEVRLIAPP 191 (305)
T ss_pred CCCCCcHHHH--HHHHHHHcCCEEEEECCc
Confidence 52 33333 445677789998877654
No 299
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=39.70 E-value=1.1e+02 Score=30.97 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH---HHHHhcCCceeecC
Q 017159 194 HVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ---EKLQNQGFEVVLPD 248 (376)
Q Consensus 194 ~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~---~~L~~~G~evv~p~ 248 (376)
+.++...+.++..|.+ |+.|++.+.+.+.+.++ +.|++.|+++.+.+
T Consensus 14 g~l~~l~~~l~~~g~~--------~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~ 63 (377)
T cd08176 14 GAIKEIGDELKNLGFK--------KALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYD 63 (377)
T ss_pred CHHHHHHHHHHHhCCC--------eEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeC
Confidence 4455566666666543 78888776665545554 55677788776554
No 300
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=39.63 E-value=2.5e+02 Score=28.25 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+||+=+. .|..+.++.+..++||||... +.+. .+.+. |.+. -.+.+|+++|-
T Consensus 90 l~Dtarvls~y-~D~iviR~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~---l~gl~va~vGD 164 (334)
T PRK12562 90 IKDTARVLGRM-YDGIQYRGH-GQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKA---FNEMTLVYAGD 164 (334)
T ss_pred HHHHHHHHHHh-CCEEEEECC-chHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCC---cCCcEEEEECC
Confidence 55566778888 999999987 477889999999999999643 1111 12222 2000 12468999985
Q ss_pred c--hhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 D--ATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~--~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
. .+..+ +-..+...|.++.+..++
T Consensus 165 ~~~~v~~S--~~~~~~~~G~~v~~~~P~ 190 (334)
T PRK12562 165 ARNNMGNS--MLEAAALTGLDLRLVAPQ 190 (334)
T ss_pred CCCCHHHH--HHHHHHHcCCEEEEECCc
Confidence 2 34443 334567789988876654
No 301
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=39.43 E-value=65 Score=31.38 Aligned_cols=136 Identities=14% Similarity=0.083 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCC----chhhHHHHhccCCCCee------------------ccHHHHHHHHHHh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHI----SHAWHGDVSEGCSIPFL------------------HVGECVAKELKEA 206 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNT----AH~~~d~L~~~~~vPvl------------------~Iveat~~~~~~~ 206 (376)
+++.+..++.++.|.+.|+|++++=+.. +...++.+++..+.|++ .++..+.+.....
T Consensus 131 ~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~~~~l~~g~~~~~~~~~~~~~~~~~ 210 (305)
T PF02574_consen 131 EELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKDSGRLRDGTSLEDAVQVIDELLRAL 210 (305)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEEEES-TCTTBCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999998665 33346666663444433 1233222221111
Q ss_pred cCCCCcCCCCceEEEeecchhhchHHHHHHHHhc-CCc-eeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhh
Q 017159 207 KLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ-GFE-VVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLV 284 (376)
Q Consensus 207 g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~-G~e-vv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~ 284 (376)
. ....-||+=+|.+........+..... .+. ++.|+...+.+.- ..-.+..++-...+...++++.+
T Consensus 211 ~------~~~~~iGvNC~~~~~~~~~l~~~~~~~~~~~l~vyPNsG~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 279 (305)
T PF02574_consen 211 P------PGPDAIGVNCTSPPEIMKALLELMSATHDIPLIVYPNSGEPYDVG-----KVWSETPEDFAPEWAEFVKEWVE 279 (305)
T ss_dssp C------TT-SEEEEESSS-HHHHHHHHHHHHHHT-SEEEEE--SBS-TTSS-----GGSTTTTTSHGGG-HHHHHHHHH
T ss_pred h------hhhheEEcCCCCcHHHHhHHHHHHhccCCceEEEecCCCCCcccc-----cccccchhhhHHHHHHHHHHHHH
Confidence 1 112368888888876666666665553 333 3566643332110 00011111111115566777777
Q ss_pred CCCCEEEECCCc
Q 017159 285 RAVNAVIIGSDE 296 (376)
Q Consensus 285 ~gaDaVILGCTE 296 (376)
.|+ .||=||-.
T Consensus 280 ~G~-~iiGGCCG 290 (305)
T PF02574_consen 280 AGA-RIIGGCCG 290 (305)
T ss_dssp HHH-CEE---TT
T ss_pred hCC-EEEEeCCC
Confidence 777 68888854
No 302
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=39.34 E-value=3.8e+02 Score=26.28 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCC
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCH 175 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCN 175 (376)
+.+.+.+.++.+.++|+|.|.+.--
T Consensus 178 i~~~~~~~~~~~~~~Gad~I~i~dp 202 (340)
T TIGR01463 178 ALDFVIAYAKAMVEAGADVIAIADP 202 (340)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCC
Confidence 4445566667677899999988653
No 303
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=39.24 E-value=83 Score=29.43 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=33.5
Q ss_pred HHHHHHcCCcEEEEeCC-CchhhHHHHhc------cCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecc
Q 017159 159 RAFLEQAGARCIVMPCH-ISHAWHGDVSE------GCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCN-TAH~~~d~L~~------~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
++.|...|.|++.++-| +..+..+-+.+ ..+++.++.-....+ ...--+. ...+.|||++|-.
T Consensus 66 ~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~~g~~~~~~~-~~~~~i~---~~~g~kIg~ig~t 135 (239)
T smart00854 66 AAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAHVGAGRNLAE-ARKPAIV---EVKGIKIALLAYT 135 (239)
T ss_pred HHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCCCCEeeCCCChHH-hhCcEEE---EECCEEEEEEEEE
Confidence 35577899999999977 22222333322 347888876322211 1110000 0124589999854
No 304
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=39.21 E-value=61 Score=27.13 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
+...++.|.+.|+|+|-++.=+
T Consensus 54 ~~~~~~~l~~~~~d~IHlssC~ 75 (107)
T PF08821_consen 54 LVRRIKKLKKNGADVIHLSSCM 75 (107)
T ss_pred HHHHHHHHHHCCCCEEEEcCCE
Confidence 3444567889999999776443
No 305
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=39.16 E-value=1.6e+02 Score=29.89 Aligned_cols=41 Identities=15% Similarity=0.316 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecchhhchH---HHHHHHHhcCCcee
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAG---FYQEKLQNQGFEVV 245 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~---~Y~~~L~~~G~evv 245 (376)
.+.++.++..|.+ +|+++......-.+ .+++.+++.|+++.
T Consensus 161 ~ai~~li~~~~w~--------~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa 204 (403)
T cd06361 161 KAMAHLIKKSGWN--------WVGIIITDDDYGRSALETFIIQAEANGVCIA 204 (403)
T ss_pred HHHHHHHHHcCCc--------EEEEEEecCchHHHHHHHHHHHHHHCCeEEE
Confidence 3445555555654 89999876554333 36677888898774
No 306
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=39.06 E-value=3.1e+02 Score=25.13 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=41.7
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc--------------------HHHHHHHHHHh--cCCCCcCC
Q 017159 160 AFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV--------------------GECVAKELKEA--KLKPLEAG 214 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~--g~k~~~~~ 214 (376)
+.+.+.++|.|++...... ..++.+.+ .++|++-+ ...+++++.+. |.
T Consensus 50 ~~~~~~~vdgiii~~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~------ 122 (270)
T cd06308 50 ENFIRQGVDLLIISPNEAAPLTPVVEEAYR-AGIPVILLDRKILSDKYTAYIGADNYEIGRQAGEYIANLLPGK------ 122 (270)
T ss_pred HHHHHhCCCEEEEecCchhhchHHHHHHHH-CCCCEEEeCCCCCCccceEEeecCcHHHHHHHHHHHHHHcCCC------
Confidence 3355678998887643322 22444433 35555432 12234555553 33
Q ss_pred CCceEEEeecchh-----hchHHHHHHHHhc-CCcee
Q 017159 215 SGVRIGVLATDAT-----LSAGFYQEKLQNQ-GFEVV 245 (376)
Q Consensus 215 ~~~rVGlLaT~~T-----~~s~~Y~~~L~~~-G~evv 245 (376)
++|+++..... .+..-|.+.++++ |+++.
T Consensus 123 --~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~ 157 (270)
T cd06308 123 --GNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIV 157 (270)
T ss_pred --ceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEE
Confidence 49999953221 1223367788888 87654
No 307
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=39.04 E-value=84 Score=25.05 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhcCCcee
Q 017159 198 CVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 198 at~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv 245 (376)
+.++.+.+.|++ |+||.+|- +.|+++|+++.
T Consensus 4 ~~a~~l~~lG~~-----------i~AT~gTa------~~L~~~Gi~~~ 34 (95)
T PF02142_consen 4 PLAKRLAELGFE-----------IYATEGTA------KFLKEHGIEVT 34 (95)
T ss_dssp HHHHHHHHTTSE-----------EEEEHHHH------HHHHHTT--EE
T ss_pred HHHHHHHHCCCE-----------EEEChHHH------HHHHHcCCCce
Confidence 456677777754 89999983 45778899843
No 308
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=38.94 E-value=1.4e+02 Score=24.53 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
.+.++.+.+.|+..|+|.++. . +..+.+..+.+++.+
T Consensus 60 i~~~~~a~~~g~~iI~IT~~~--~-l~~~~~~~~~~~~~~ 96 (119)
T cd05017 60 LSAVEQAKERGAKIVAITSGG--K-LLEMAREHGVPVIII 96 (119)
T ss_pred HHHHHHHHHCCCEEEEEeCCc--h-HHHHHHHcCCcEEEC
Confidence 334456778899999999876 2 444555446666654
No 309
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=38.91 E-value=1e+02 Score=30.17 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHHHcCCcEEEEeCCCchhh
Q 017159 160 AFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~ 180 (376)
++.++.|+|++.++--|.|..
T Consensus 160 ~f~~~tg~DyLAvaiG~~hg~ 180 (281)
T PRK06806 160 RFAEETDVDALAVAIGNAHGM 180 (281)
T ss_pred HHHHhhCCCEEEEccCCCCCC
Confidence 444567999999988888874
No 310
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=38.61 E-value=1.9e+02 Score=27.86 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeC-----------------------------CCchhhHH--HHhccCCCCeeccHHHHH
Q 017159 152 SQNLRHKRAFLEQAGARCIVMPC-----------------------------HISHAWHG--DVSEGCSIPFLHVGECVA 200 (376)
Q Consensus 152 ~~~l~~~~~~L~~~Gad~IVIaC-----------------------------NTAH~~~d--~L~~~~~vPvl~Iveat~ 200 (376)
.+.-...++.|++.|++.+.+|+ |...+|+. .++...++|++-+.+.|+
T Consensus 27 ~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~~~~~~~~~~~AVG~~TA 106 (266)
T PRK08811 27 SGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVRAAHRLLPLQRPARAHWLSVGEGTA 106 (266)
T ss_pred HHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHHHHHHHHhcccCccCCeEEEECHHHH
Q ss_pred HHHHHhcCCCCcC----------------CCCceEEEeecchhhchHHHHHHHHhcCCceee
Q 017159 201 KELKEAKLKPLEA----------------GSGVRIGVLATDATLSAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 201 ~~~~~~g~k~~~~----------------~~~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~ 246 (376)
+++++.|+++... ..+++|.++-..+.. +...+.|.+.|..|..
T Consensus 107 ~aL~~~G~~~~~~P~~~~se~Ll~l~~~~~~g~~vLi~rg~~gr--~~L~~~L~~~G~~V~~ 166 (266)
T PRK08811 107 RALQACGIDEVVRPTRMDSEGLLALPLAQAPLQAVGLITAPGGR--GLLAPTLQQRGARILR 166 (266)
T ss_pred HHHHHcCCCceeCCCCCCcHHHHhChhhhCCCCEEEEEeCCCcH--HHHHHHHHHCCCEEeE
No 311
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.56 E-value=3.1e+02 Score=25.07 Aligned_cols=29 Identities=14% Similarity=0.353 Sum_probs=18.9
Q ss_pred ceEEEeecch-----hhchHHHHHHHHhcCCcee
Q 017159 217 VRIGVLATDA-----TLSAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 217 ~rVGlLaT~~-----T~~s~~Y~~~L~~~G~evv 245 (376)
++|++++.+. ..+..-|++.++++|+++.
T Consensus 126 ~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~ 159 (277)
T cd06319 126 GKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLA 159 (277)
T ss_pred CcEEEEeccCCCccHHHHHHHHHHHHHhcCCceE
Confidence 4899997432 2222347888999887643
No 312
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=38.39 E-value=62 Score=34.68 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch-----------hhHHHHhccCCCCee------ccHH---------HHHHHHHHhcCC
Q 017159 156 RHKRAFLEQAGARCIVMPCHISH-----------AWHGDVSEGCSIPFL------HVGE---------CVAKELKEAKLK 209 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH-----------~~~d~L~~~~~vPvl------~Ive---------at~~~~~~~g~k 209 (376)
.+.+++..+.|||-|++=--|+. -++.++.+.+.+|+- ++-| +.++.+...|..
T Consensus 270 ve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Gad 349 (538)
T PLN02617 270 VELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGAD 349 (538)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCC
Confidence 44567788999998876655541 136666677788853 2212 446667777765
Q ss_pred CCcCCCCceEEEeecchhhc------------hHHHHHHHHhcCCceeecCcc
Q 017159 210 PLEAGSGVRIGVLATDATLS------------AGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 210 ~~~~~~~~rVGlLaT~~T~~------------s~~Y~~~L~~~G~evv~p~~~ 250 (376)
||. ++|.+... ..+..+..+.+|-+.++...+
T Consensus 350 --------kV~-i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD 393 (538)
T PLN02617 350 --------KIS-IGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSID 393 (538)
T ss_pred --------EEE-EChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEe
Confidence 787 68876554 267888888888885555443
No 313
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=38.28 E-value=2.3e+02 Score=27.65 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh---HHHHhccCCC--C---eeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW---HGDVSEGCSI--P---FLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~---~d~L~~~~~v--P---vl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
..+.+++|.+.|..++.+.-|+.-.- ..+|+....+ + |+.-.++++..+++.. +.+||-++|..+
T Consensus 29 a~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~-------~~~kv~viG~~~ 101 (269)
T COG0647 29 AAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQK-------PGKKVYVIGEEG 101 (269)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhC-------CCCEEEEECCcc
Confidence 45556789999999999988864332 4455552233 2 7777888998888853 225999999865
Q ss_pred hhchHHHHHHHHhcCCceee
Q 017159 227 TLSAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 227 T~~s~~Y~~~L~~~G~evv~ 246 (376)
..+.++..|++.+.
T Consensus 102 ------l~~~l~~~G~~~~~ 115 (269)
T COG0647 102 ------LKEELEGAGFELVD 115 (269)
T ss_pred ------hHHHHHhCCcEEec
Confidence 56778888988875
No 314
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.17 E-value=96 Score=31.08 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=68.0
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc--HHHHHHHHHHh-cCCCCcCCCCceEEEeecchhhchHHHH
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV--GECVAKELKEA-KLKPLEAGSGVRIGVLATDATLSAGFYQ 234 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I--veat~~~~~~~-g~k~~~~~~~~rVGlLaT~~T~~s~~Y~ 234 (376)
.++.|+.+|+|.++.-= .|. ++++.-+++|+.++ .+..++++.+. +. ..+-|+|.+..- ...-+
T Consensus 118 vA~ll~~~g~d~vit~D--lH~--~~i~~~F~ipv~~l~a~~~~~~~~~~~~~~--------~~~vvVsPD~gg-~~rA~ 184 (332)
T PRK00553 118 VADLLTKAGVTRVTLTD--IHS--DQTQGFFDIPVDILRTYHVFLSRVLELLGK--------KDLVVVSPDYGG-VKRAR 184 (332)
T ss_pred HHHHHHhcCCCEEEEEe--CCh--HHHHhhcCCCcceeechHHHHHHHHHhcCC--------CCeEEEEECCCc-HHHHH
Confidence 45668888999876543 563 67888888998544 44556666542 22 245556654421 11222
Q ss_pred HHHHhcCCceeecCccccc-c--chHHHHHHHhcCC-------hHHHHHHHHHHHHHHhhCCCCEEEECCCcc
Q 017159 235 EKLQNQGFEVVLPDKATME-H--VIIPTIEALNHRD-------MEGARNLLRIGIQLLLVRAVNAVIIGSDEM 297 (376)
Q Consensus 235 ~~L~~~G~evv~p~~~~q~-~--~l~~~ie~lk~G~-------~~~a~~~l~~~i~~L~~~gaDaVILGCTEl 297 (376)
..-+..|....+-...... . ..+.....++ |. +-.+...+..+.+.|.+.|+..|...|||-
T Consensus 185 ~lA~~lg~~~~vi~K~r~~~~~~~~~~~~gdv~-Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHg 256 (332)
T PRK00553 185 LIAESLELPLAIIDKRRPKHNVAESINVLGEVK-NKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHG 256 (332)
T ss_pred HHHHHhCCCEEEEEEecCCcceEeeEEeeccCC-CCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEee
Confidence 2222235443332221100 0 0000011222 21 111345677888889899999999999994
No 315
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=38.08 E-value=3.1e+02 Score=24.81 Aligned_cols=75 Identities=13% Similarity=0.172 Sum_probs=42.4
Q ss_pred HHHHHHcCCcEEEE-eCCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+.+.++|.|++ +++..-.....+.+ ++|++.+ ...+++.+.+.|. ++
T Consensus 48 ~~~~~~~~vdgiii~~~~~~~~~~~~~~~--~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~ 117 (267)
T cd06284 48 LDLLRRKQADGIILLDGSLPPTALTALAK--LPPIVQACEYIPGLAVPSVSIDNVAAARLAVDHLISLGH--------RR 117 (267)
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHhc--CCCEEEEecccCCCCcceEEecccHHHHHHHHHHHHcCC--------ce
Confidence 45677889998877 45422222333332 5666533 2234555555543 48
Q ss_pred EEEeecchh-----hchHHHHHHHHhcCCc
Q 017159 219 IGVLATDAT-----LSAGFYQEKLQNQGFE 243 (376)
Q Consensus 219 VGlLaT~~T-----~~s~~Y~~~L~~~G~e 243 (376)
|++++.... -+..-|.+.++++|++
T Consensus 118 i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~ 147 (267)
T cd06284 118 IALITGPRDNPLARDRLEGYRQALAEAGLP 147 (267)
T ss_pred EEEEcCCccchhHHHHHHHHHHHHHHcCCC
Confidence 999866322 1223367788888854
No 316
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=37.84 E-value=3.2e+02 Score=26.45 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 017159 155 LRHKRAFLEQAGARCIVMP 173 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIa 173 (376)
+.+.++.|+++|+|.|++-
T Consensus 171 ~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 171 IVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 4455677999999988654
No 317
>PRK09701 D-allose transporter subunit; Provisional
Probab=37.34 E-value=3.8e+02 Score=25.64 Aligned_cols=128 Identities=9% Similarity=0.002 Sum_probs=66.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHHHhhh-CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 83 NTIGIIGGVSVSSTLNFLGKLVWYSAK-DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 83 k~IGIIGGmGp~AT~~f~~kI~~~~~~-~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.+||++-. ..+-.||..+.+...+ ..+....+.++..+. ..+. +... +.++.
T Consensus 25 ~~Igvi~~---~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~------------------~~~~--~~~~----~~i~~ 77 (311)
T PRK09701 25 AEYAVVLK---TLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS------------------EGDF--QSQL----QLFED 77 (311)
T ss_pred CeEEEEeC---CCCCHHHHHHHHHHHHHHHHcCCeEEEecCCC------------------CCCH--HHHH----HHHHH
Confidence 48999862 2345678777776642 222344444332110 0010 1122 22344
Q ss_pred HHHcCCcEEEEeCCCchh---hHHHHhccCCCCeecc---------------------------HHHHHHHHHHh-cCCC
Q 017159 162 LEQAGARCIVMPCHISHA---WHGDVSEGCSIPFLHV---------------------------GECVAKELKEA-KLKP 210 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~---~~d~L~~~~~vPvl~I---------------------------veat~~~~~~~-g~k~ 210 (376)
+...++|.|+|....... .++++.+ .++|++-+ ...+++++.+. |.+
T Consensus 78 l~~~~vDgiIi~~~~~~~~~~~l~~~~~-~giPvV~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~aa~~L~~~~g~~- 155 (311)
T PRK09701 78 LSNKNYKGIAFAPLSSVNLVMPVARAWK-KGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAE- 155 (311)
T ss_pred HHHcCCCEEEEeCCChHHHHHHHHHHHH-CCCcEEEeCCCCCcccccccCCceEEEeccchHHHHHHHHHHHHHHhCCC-
Confidence 566789999887654322 2344432 35665522 34455666664 431
Q ss_pred CcCCCCceEEEeec-chh----hchHHHHHHHHhcC-Cce
Q 017159 211 LEAGSGVRIGVLAT-DAT----LSAGFYQEKLQNQG-FEV 244 (376)
Q Consensus 211 ~~~~~~~rVGlLaT-~~T----~~s~~Y~~~L~~~G-~ev 244 (376)
.++|++++. ... .+..-|++.++++| +..
T Consensus 156 -----~~~i~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~ 190 (311)
T PRK09701 156 -----GGEVAIIEGKAGNASGEARRNGATEAFKKASQIKL 190 (311)
T ss_pred -----CCEEEEEECCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 358998843 321 22234788888887 654
No 318
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=37.30 E-value=1.4e+02 Score=28.57 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh--------hHHHHhccCCCCee
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHA--------WHGDVSEGCSIPFL 193 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~--------~~d~L~~~~~vPvl 193 (376)
.+.++..++.|+|.+++..-.... ++.++.+.+++|++
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~ 127 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVI 127 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 344566788999998775532222 36677777778875
No 319
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.30 E-value=1.7e+02 Score=28.95 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCee--ccHHHHHHHHHHhcCCCCcCCCCceEEEeecch--hhchHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFL--HVGECVAKELKEAKLKPLEAGSGVRIGVLATDA--TLSAGF 232 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl--~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~--T~~s~~ 232 (376)
-.++.|+.+|+|.++.-= .|. ++++.-+++|+. +..+..++++.+. ++ .+..-|++... ......
T Consensus 97 ~va~lL~~~g~d~vitvD--~H~--~~~~~~f~~p~~~l~~~~~la~~i~~~-~~------~~~~vvVspd~Ga~~~a~~ 165 (304)
T PRK03092 97 LVADLFKTAGADRIMTVD--LHT--AQIQGFFDGPVDHLFAMPLLADYVRDK-YD------LDNVTVVSPDAGRVRVAEQ 165 (304)
T ss_pred HHHHHHHhcCCCeEEEEe--cCh--HHHHhhcCCCeeeEechHHHHHHHHHh-cC------CCCcEEEEecCchHHHHHH
Confidence 345678888999876543 463 677777888874 4455567777543 11 11344455432 222333
Q ss_pred HHHHHHhcCCceeecCccc-c-c-cchHHHHHHHhcCC-------hHHHHHHHHHHHHHHhhCCCCEEEECCCcc
Q 017159 233 YQEKLQNQGFEVVLPDKAT-M-E-HVIIPTIEALNHRD-------MEGARNLLRIGIQLLLVRAVNAVIIGSDEM 297 (376)
Q Consensus 233 Y~~~L~~~G~evv~p~~~~-q-~-~~l~~~ie~lk~G~-------~~~a~~~l~~~i~~L~~~gaDaVILGCTEl 297 (376)
+.+.|....+.++...... . . .........++ |. +-.+...+.++++.|.+.|+..|.+.|||-
T Consensus 166 la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~-gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~ 239 (304)
T PRK03092 166 WADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVE-GRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHG 239 (304)
T ss_pred HHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCC-CCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 4444431122222111100 0 0 00101111122 21 111345677888889999999999999984
No 320
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=37.28 E-value=66 Score=28.65 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=42.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCe--EeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 84 TIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPF--VVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 84 ~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~--il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
+++|| ||..|=..+.+++.+...+-+ +++ -+.|- .. .+ +++ .+.++.
T Consensus 2 ~V~Ii--~gs~SD~~~~~~a~~~L~~~g---i~~~~~V~sa-------------------HR-~p--~~l----~~~~~~ 50 (150)
T PF00731_consen 2 KVAII--MGSTSDLPIAEEAAKTLEEFG---IPYEVRVASA-------------------HR-TP--ERL----LEFVKE 50 (150)
T ss_dssp EEEEE--ESSGGGHHHHHHHHHHHHHTT----EEEEEE--T-------------------TT-SH--HHH----HHHHHH
T ss_pred eEEEE--eCCHHHHHHHHHHHHHHHHcC---CCEEEEEEec-------------------cC-CH--HHH----HHHHHH
Confidence 56677 666677777888877766533 222 11110 11 11 333 333455
Q ss_pred HHHcCCcEE-EEeCCCchhhHHHHhccCCCCeecc
Q 017159 162 LEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 162 L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+++.|++++ +++-..+|- ---+...+..|||++
T Consensus 51 ~~~~~~~viIa~AG~~a~L-pgvva~~t~~PVIgv 84 (150)
T PF00731_consen 51 YEARGADVIIAVAGMSAAL-PGVVASLTTLPVIGV 84 (150)
T ss_dssp TTTTTESEEEEEEESS--H-HHHHHHHSSS-EEEE
T ss_pred hccCCCEEEEEECCCcccc-hhhheeccCCCEEEe
Confidence 677788844 344444443 445566678899887
No 321
>PLN02854 3-ketoacyl-CoA synthase
Probab=37.20 E-value=2.4e+02 Score=30.26 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH-HHHcC-----
Q 017159 93 VSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF-LEQAG----- 166 (376)
Q Consensus 93 p~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~-L~~~G----- 166 (376)
..-+++|.+||.+.+.=+++-+.|--+.+.|. +..+. . .++|....+...++. |+++|
T Consensus 146 ~~~~~~f~~~~~~~sg~g~~ty~P~~~~~~~~--~~~~~----~----------~r~ea~~v~~~~~~~lL~kaGi~p~d 209 (521)
T PLN02854 146 EDETVQFQRRISTRSGLGDETYLPRGITSRPP--NLCME----E----------ARAEAEAVMFGALDSLFSKTGVKPRD 209 (521)
T ss_pred CHHHHHHHHHHHHhcCCCCccccCccccCCCC--cchHH----H----------HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 35677999999998876666666655544431 11110 0 114444445555544 46666
Q ss_pred CcEEEEeCCCchhh---HHHHhccCC----CCeeccH--HH--------HHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 167 ARCIVMPCHISHAW---HGDVSEGCS----IPFLHVG--EC--------VAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 167 ad~IVIaCNTAH~~---~d~L~~~~~----vPvl~Iv--ea--------t~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
+|.||++|....+. -..|+++++ ++-+++- -+ +++.+.+.+ +++++.|++|..
T Consensus 210 ID~LIv~cS~~~p~PSlAa~I~n~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~-------~~~~aLVVstE~ 279 (521)
T PLN02854 210 IGILIVNCSLFNPTPSLSAMIVNHYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKAN-------PNSYAVVVSTEN 279 (521)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHhCCCCCceEEecccchhhhHHHHHHHHHHHHHhC-------CCCeEEEEEEee
Confidence 47888877644322 334555544 3455543 11 123333332 346899999875
No 322
>PRK08185 hypothetical protein; Provisional
Probab=37.18 E-value=63 Score=31.74 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=19.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHH
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHG 182 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d 182 (376)
.++.+.-|+|+++++.-|+|-.|.
T Consensus 155 ~~f~~~TgvD~LAvaiGt~HG~y~ 178 (283)
T PRK08185 155 EDFVSRTGVDTLAVAIGTAHGIYP 178 (283)
T ss_pred HHHHHhhCCCEEEeccCcccCCcC
Confidence 455566799999999999998874
No 323
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=37.08 E-value=3.3e+02 Score=25.04 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=26.5
Q ss_pred HHHHhhCCC--CEEEECCCccccccCCC-C-CCCCeeeehHHHHHHHHHHHHHhc
Q 017159 279 IQLLLVRAV--NAVIIGSDEMQGVLPKD-D-PLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 279 i~~L~~~ga--DaVILGCTElpll~~~~-~-~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
++.+.+.|. |.-|.|.-..+...... . +..-.+--+...+++.+++.+...
T Consensus 195 ~~al~~~g~~~di~vig~d~~~~~~~~~~~~~~lttv~~~~~~~g~~a~~~l~~~ 249 (271)
T cd06314 195 AEAVKAAGKLGKVKIVGFDEDPDTLQGVKEGTIQGTVVQRPYQMGYLSVTVLAAL 249 (271)
T ss_pred HHHHHHcCCCCceEEEEeCCCHHHHHHHHcCcceEEEecCHHHHHHHHHHHHHHH
Confidence 344444443 67777777766542211 1 111123344567777777777543
No 324
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=36.99 E-value=2.4e+02 Score=25.61 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=40.5
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCe-------------ecc-----HHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPF-------------LHV-----GECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPv-------------l~I-----veat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
+.+...++|.|++.-...+ .+++.+ .++|+ ++. ...+++++.+.|. ++|++
T Consensus 49 ~~~~~~~~dgiii~~~~~~--~~~~~~-~gipvv~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~--------~~i~~ 117 (265)
T cd06291 49 EMLRQNQVDGIIAGTHNLG--IEEYEN-IDLPIVSFDRYLSENIPIVSSDNYEGGRLAAEELIERGC--------KHIAH 117 (265)
T ss_pred HHHHHcCCCEEEEecCCcC--HHHHhc-CCCCEEEEeCCCCCCCCeEeechHHHHHHHHHHHHHcCC--------cEEEE
Confidence 4566788998876432222 233332 24443 333 2345566666554 38998
Q ss_pred eecchh------hchHHHHHHHHhcCCce
Q 017159 222 LATDAT------LSAGFYQEKLQNQGFEV 244 (376)
Q Consensus 222 LaT~~T------~~s~~Y~~~L~~~G~ev 244 (376)
++-... .+..-|.+.++++|+++
T Consensus 118 i~~~~~~~~~~~~r~~gf~~~l~~~~~~~ 146 (265)
T cd06291 118 IGGPNNTVSPTNLRYEGFLDVLKENGLEV 146 (265)
T ss_pred EccCcccccchHHHHHHHHHHHHHcCCCC
Confidence 853222 11233788888888754
No 325
>PRK08005 epimerase; Validated
Probab=36.98 E-value=3.6e+02 Score=25.25 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=13.4
Q ss_pred HHHHHHhhCCCCEEEEC
Q 017159 277 IGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 277 ~~i~~L~~~gaDaVILG 293 (376)
+.+..+.+.|||.+|+|
T Consensus 175 ~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 175 RAARLLAAAGAQHLVIG 191 (210)
T ss_pred HHHHHHHHCCCCEEEEC
Confidence 33456778899999999
No 326
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=36.92 E-value=2.6e+02 Score=28.25 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=42.6
Q ss_pred HHHcCCcEEEEeCCCchh-hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhch--HHHHHHHH
Q 017159 162 LEQAGARCIVMPCHISHA-WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSA--GFYQEKLQ 238 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s--~~Y~~~L~ 238 (376)
+.....++|++-|.+... ...++.+....++++.-...-... .++ .+++-++ +++|-.. ....+.++
T Consensus 162 l~~l~~~~iv~Dv~SvK~~~~~~~~~~~~~~fvg~HPm~G~~~--~~~-------~~~~vv~-~~~~~~~~~~~~~~l~~ 231 (374)
T PRK11199 162 LPPLPEDCILVDLTSVKNAPLQAMLAAHSGPVLGLHPMFGPDV--GSL-------AKQVVVV-CDGRQPEAYQWLLEQIQ 231 (374)
T ss_pred HhCCCCCcEEEECCCccHHHHHHHHHhCCCCEEeeCCCCCCCC--ccc-------CCCEEEE-cCCCCchHHHHHHHHHH
Confidence 444567788888866533 356666554445654322111100 111 1234444 3343321 34677788
Q ss_pred hcCCceeecCccccc
Q 017159 239 NQGFEVVLPDKATME 253 (376)
Q Consensus 239 ~~G~evv~p~~~~q~ 253 (376)
..|..++.-+.+..+
T Consensus 232 ~lG~~v~~~~~~~HD 246 (374)
T PRK11199 232 VWGARLHRISAVEHD 246 (374)
T ss_pred HCCCEEEECCHHHHH
Confidence 889888877765444
No 327
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=36.92 E-value=2.6e+02 Score=26.20 Aligned_cols=21 Identities=5% Similarity=0.369 Sum_probs=14.3
Q ss_pred HHHHHhhCCCCEEEECCCccc
Q 017159 278 GIQLLLVRAVNAVIIGSDEMQ 298 (376)
Q Consensus 278 ~i~~L~~~gaDaVILGCTElp 298 (376)
+++.+...++|+||+..++.+
T Consensus 83 ~i~~l~~~~vDgiIi~~~~~~ 103 (309)
T PRK11041 83 FVNLIITKQIDGMLLLGSRLP 103 (309)
T ss_pred HHHHHHHcCCCEEEEecCCCC
Confidence 444456678999998766543
No 328
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=36.84 E-value=59 Score=31.47 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh---------------hHHHHhccCCCC
Q 017159 147 IRGAVSQNLRHKRAFLEQAGARCIVMPCHISHA---------------WHGDVSEGCSIP 191 (376)
Q Consensus 147 ~~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~---------------~~d~L~~~~~vP 191 (376)
+.+++++...+.++.|++.|+|.|++---.--+ ...++++.+++|
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p 82 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVP 82 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 348899999999999999999999987633222 245667777777
No 329
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=36.35 E-value=3.9e+02 Score=25.55 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=14.0
Q ss_pred HHHHhhCCCCEEEECCCccc
Q 017159 279 IQLLLVRAVNAVIIGSDEMQ 298 (376)
Q Consensus 279 i~~L~~~gaDaVILGCTElp 298 (376)
++.+.+.|||.+|.|..=+.
T Consensus 213 ~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 213 VKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred HHHHHHcCCCEEEECHHHHH
Confidence 34566789999999965433
No 330
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=36.08 E-value=71 Score=26.46 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHh---ccCCCCeecc
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAWHGDVS---EGCSIPFLHV 195 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~---~~~~vPvl~I 195 (376)
.+.++.+....+++|+||.|+.--.-++|+ ...++||+.-
T Consensus 25 k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y 67 (100)
T COG1911 25 KRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVY 67 (100)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 344566777889999999999766544443 3458998863
No 331
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=36.04 E-value=3.3e+02 Score=24.67 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=20.1
Q ss_pred cCCcEEEEeCCCchh-hHHHHhccCCCCeeccH
Q 017159 165 AGARCIVMPCHISHA-WHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 165 ~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~Iv 196 (376)
.|+.+|+=+..+.-. ....+-+..++|+++..
T Consensus 70 ~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~ 102 (298)
T cd06269 70 RGVVAVIGPSSSSSAEAVASLLGALHIPQISYS 102 (298)
T ss_pred CceEEEECCCCchHHHHHHHHhccCCCcEEecc
Confidence 577777766544322 24566677788888753
No 332
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=36.00 E-value=79 Score=32.03 Aligned_cols=45 Identities=27% Similarity=0.231 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHH
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKEL 203 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~ 203 (376)
.+.++.+++.|+|.||-+|-+-+ ..|....++|++|+++-+++++
T Consensus 361 ~~k~~~~~~~~ad~ivt~Cp~C~---~ql~~~~~~~v~H~~ell~~al 405 (407)
T PRK11274 361 DNKLAALEAGKPEVIVTANIGCQ---THLQSGTRTPVRHWIELVDEAL 405 (407)
T ss_pred HHHHHHHHhcCCCEEEecCcCHH---HHHcCCCCCceeeHHHHHHHHh
Confidence 34566677889999999996643 4555566899999999887654
No 333
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=35.97 E-value=60 Score=31.92 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHG 182 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d 182 (376)
++.+|.++-|+|+++++.-|+|-.|.
T Consensus 162 ea~~Fv~~TgvD~LAvaiGt~HG~y~ 187 (288)
T TIGR00167 162 EAKEFVKLTGVDSLAAAIGNVHGVYK 187 (288)
T ss_pred HHHHHHhccCCcEEeeccCccccccC
Confidence 34466778899999999999997653
No 334
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=35.94 E-value=1.3e+02 Score=30.77 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH---HHHHhcCCceeecC
Q 017159 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ---EKLQNQGFEVVLPD 248 (376)
Q Consensus 195 Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~---~~L~~~G~evv~p~ 248 (376)
.++...+.+++.|.+ ++.|++.++-.+.++++ +.|++.|+++.+.+
T Consensus 36 ~~~~l~~~~~~~g~~--------~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~ 84 (395)
T PRK15454 36 AVSSCGQQAQTRGLK--------HLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWP 84 (395)
T ss_pred HHHHHHHHHHhcCCC--------EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEEC
Confidence 445555666665543 67766655555555544 55777798876654
No 335
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=35.92 E-value=1.6e+02 Score=29.65 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=22.0
Q ss_pred ceEEEeecchhhc-hHH---HHHHHHhcCCceeecCc
Q 017159 217 VRIGVLATDATLS-AGF---YQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 217 ~rVGlLaT~~T~~-s~~---Y~~~L~~~G~evv~p~~ 249 (376)
+|+.|++++.+.+ +++ ..+.|++.|+++.+.+.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~ 65 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGG 65 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECC
Confidence 3899898876654 444 44567777888776543
No 336
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=35.88 E-value=1e+02 Score=30.19 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=33.0
Q ss_pred ceEEEeecchhhchHHHHHHHHhcC--CceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhC----CCCEE
Q 017159 217 VRIGVLATDATLSAGFYQEKLQNQG--FEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVR----AVNAV 290 (376)
Q Consensus 217 ~rVGlLaT~~T~~s~~Y~~~L~~~G--~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~----gaDaV 290 (376)
+||||+..+....-+=+.+.+..++ +++.+.....| |+- +...+.++++.+.+. ++|+|
T Consensus 15 ~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQ-------------G~~--A~~~I~~al~~~~~~~~~~~~Dvi 79 (319)
T PF02601_consen 15 KRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQ-------------GEG--AAASIVSALRKANEMGQADDFDVI 79 (319)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEecccc-------------ccc--hHHHHHHHHHHHHhccccccccEE
Confidence 5999999876544444555555553 33333322222 331 333344444444433 48999
Q ss_pred EEC
Q 017159 291 IIG 293 (376)
Q Consensus 291 ILG 293 (376)
|++
T Consensus 80 ii~ 82 (319)
T PF02601_consen 80 III 82 (319)
T ss_pred EEe
Confidence 985
No 337
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=35.84 E-value=1.3e+02 Score=29.30 Aligned_cols=34 Identities=9% Similarity=-0.045 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCEEEECCCcccc
Q 017159 266 RDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQG 299 (376)
Q Consensus 266 G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpl 299 (376)
|...+....+.+....|.+.||-.|+|-|.--.+
T Consensus 155 Gk~~~~a~~l~~~A~ale~AGaf~ivlE~vp~~l 188 (261)
T PF02548_consen 155 GKTAEEAEKLLEDAKALEEAGAFAIVLECVPAEL 188 (261)
T ss_dssp STSHHHHHHHHHHHHHHHHHT-SEEEEESBBHHH
T ss_pred ecCHHHHHHHHHHHHHHHHcCccEEeeecCHHHH
Confidence 5443333334444466888899999999976554
No 338
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=35.59 E-value=1.6e+02 Score=29.89 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=42.0
Q ss_pred CCChHHHHHHHHHHHHHhhh--------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 90 GVSVSSTLNFLGKLVWYSAK--------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 90 GmGp~AT~~f~~kI~~~~~~--------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
|+.|.++.++.++=.+..+. .+.||++- . . ..+- ++++....+-++.
T Consensus 86 GLDW~~a~ELIrRs~aeA~~~g~~ia~GaGTD~L~~--------------~-------~--~~sl--d~V~~AY~eQ~~~ 140 (382)
T PF06187_consen 86 GLDWAAARELIRRSAAEARAVGARIACGAGTDQLDP--------------A-------P--AASL--DDVIAAYEEQLEA 140 (382)
T ss_dssp TB-HHHHHHHHHHHHHHHHTSS--EEEEE--TTS------------------------T--T--H--HHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcEEeecCcCCCCC--------------C-------C--CCCH--HHHHHHHHHHHHH
Confidence 56789998877776665542 23445441 0 0 1111 5666677777888
Q ss_pred HHHcCCcEEEEeCCC-------chh---hHHHHhccCCCCee
Q 017159 162 LEQAGARCIVMPCHI-------SHA---WHGDVSEGCSIPFL 193 (376)
Q Consensus 162 L~~~Gad~IVIaCNT-------AH~---~~d~L~~~~~vPvl 193 (376)
.++.|...|+|+.-. +.- +|+++-.+++-|||
T Consensus 141 ve~~Gg~~ILMASRaLA~~A~~p~DY~~VY~~lL~q~~~PVI 182 (382)
T PF06187_consen 141 VEAAGGRVILMASRALAAVARSPDDYLRVYDRLLSQADEPVI 182 (382)
T ss_dssp HHHTT--EEE---HHHHHH--SHHHHHHHHHHHHHH-SS-EE
T ss_pred HHHcCCeEEEeehHHHHHhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999998732 211 27777777777765
No 339
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=35.58 E-value=3.9e+02 Score=25.37 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=55.7
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHh
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQN 239 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~ 239 (376)
+.+.++|||.|.+-.-+.- -+ ...+.+.+++.|. |+||-=-+.|-- ..+...|..
T Consensus 76 ~~~~~aGad~it~H~Ea~~--------------~~-~~~~i~~Ik~~G~---------kaGlalnP~T~~-~~l~~~l~~ 130 (229)
T PRK09722 76 DQLADAGADFITLHPETIN--------------GQ-AFRLIDEIRRAGM---------KVGLVLNPETPV-ESIKYYIHL 130 (229)
T ss_pred HHHHHcCCCEEEECccCCc--------------ch-HHHHHHHHHHcCC---------CEEEEeCCCCCH-HHHHHHHHh
Confidence 4566788888876555210 01 1245566777665 688777777744 345666665
Q ss_pred cCC---ceeecCccccccchHH-HHHHHhcCChHHHHHHH----------------HHHHHHHhhCCCCEEEECCC
Q 017159 240 QGF---EVVLPDKATMEHVIIP-TIEALNHRDMEGARNLL----------------RIGIQLLLVRAVNAVIIGSD 295 (376)
Q Consensus 240 ~G~---evv~p~~~~q~~~l~~-~ie~lk~G~~~~a~~~l----------------~~~i~~L~~~gaDaVILGCT 295 (376)
... =.+.|+-..|. +++ .++.++ +.++++ .+-+..+.+.|||.+|+|.+
T Consensus 131 vD~VLvMsV~PGf~GQ~--fi~~~l~KI~-----~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 131 LDKITVMTVDPGFAGQP--FIPEMLDKIA-----ELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred cCEEEEEEEcCCCcchh--ccHHHHHHHH-----HHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChH
Confidence 432 12234444443 221 111111 011110 23455677889999999974
No 340
>PRK06801 hypothetical protein; Provisional
Probab=35.46 E-value=1.3e+02 Score=29.63 Aligned_cols=52 Identities=12% Similarity=0.305 Sum_probs=34.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-----------HHHHhccCCCCeec-----cHHHHHHHHHHhcCC
Q 017159 158 KRAFLEQAGARCIVMPCHISHAW-----------HGDVSEGCSIPFLH-----VGECVAKELKEAKLK 209 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~-----------~d~L~~~~~vPvl~-----Iveat~~~~~~~g~k 209 (376)
..++.++.|+|++.++-.|+|-. +.++++.+++|++= +-+.-.+.+.+.|..
T Consensus 161 a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~ 228 (286)
T PRK06801 161 ARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIH 228 (286)
T ss_pred HHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence 34555678999999999898873 34555566777652 334555566666654
No 341
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=35.38 E-value=1.9e+02 Score=26.91 Aligned_cols=111 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEEeCC------Cchhh-HHHHhccCCCCeeccHHH-----------------HHHHHHHhcCCCC
Q 017159 156 RHKRAFLEQAGARCIVMPCH------ISHAW-HGDVSEGCSIPFLHVGEC-----------------VAKELKEAKLKPL 211 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCN------TAH~~-~d~L~~~~~vPvl~Ivea-----------------t~~~~~~~g~k~~ 211 (376)
.+.+...++.|||-|=+|.| |.++. +..+++..++|+.=|+.+ -++.+++.|.+
T Consensus 10 ~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~Gad-- 87 (201)
T PF03932_consen 10 LEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGAD-- 87 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-S--
T ss_pred HHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCC--
Q ss_pred cCCCCceEEEeecchhhchHHHHHHHHhc-CCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEE
Q 017159 212 EAGSGVRIGVLATDATLSAGFYQEKLQNQ-GFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAV 290 (376)
Q Consensus 212 ~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~-G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaV 290 (376)
.-.+|.|.-++++....-++.++.. |.++. +.-+++.+.. ..+.++.|.+.|++.|
T Consensus 88 ----G~VfG~L~~dg~iD~~~~~~Li~~a~~~~~t----------FHRAfD~~~d---------~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 88 ----GFVFGALTEDGEIDEEALEELIEAAGGMPVT----------FHRAFDEVPD---------PEEALEQLIELGFDRV 144 (201)
T ss_dssp ----EEEE--BETTSSB-HHHHHHHHHHHTTSEEE----------E-GGGGGSST---------HHHHHHHHHHHT-SEE
T ss_pred ----eeEEEeECCCCCcCHHHHHHHHHhcCCCeEE----------EeCcHHHhCC---------HHHHHHHHHhcCCCEE
Q ss_pred E
Q 017159 291 I 291 (376)
Q Consensus 291 I 291 (376)
.
T Consensus 145 L 145 (201)
T PF03932_consen 145 L 145 (201)
T ss_dssp E
T ss_pred E
No 342
>PLN02645 phosphoglycolate phosphatase
Probab=35.35 E-value=3e+02 Score=26.90 Aligned_cols=80 Identities=13% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh---HHHHhccCCCC-----eeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW---HGDVSEGCSIP-----FLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~---~d~L~~~~~vP-----vl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
..+.++.|.+.|..++++.-|+.+.- ++.+++ .+++ |++-...+...++..+. ...++|-++|+.+
T Consensus 49 a~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~-lGi~~~~~~I~ts~~~~~~~l~~~~~-----~~~~~V~viG~~~ 122 (311)
T PLN02645 49 VPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFES-LGLNVTEEEIFSSSFAAAAYLKSINF-----PKDKKVYVIGEEG 122 (311)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHH-CCCCCChhhEeehHHHHHHHHHhhcc-----CCCCEEEEEcCHH
Confidence 45566778889999888888774443 555543 4443 45555556666665443 1235799999853
Q ss_pred hhchHHHHHHHHhcCCceee
Q 017159 227 TLSAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 227 T~~s~~Y~~~L~~~G~evv~ 246 (376)
..+.++++|+.++.
T Consensus 123 ------~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 123 ------ILEELELAGFQYLG 136 (311)
T ss_pred ------HHHHHHHCCCEEec
Confidence 35567788987653
No 343
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=35.30 E-value=98 Score=36.52 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=54.2
Q ss_pred cCCeEEEEc-CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 81 QANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 81 ~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
..|+++||| |-..+|.++-+.+.-. -++++...+-+--++.|+.|.+ .++ ..+ +.+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh----------~v~vyer~dr~ggll~ygipnm-----kld---k~v---v~rrv 1842 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGH----------TVTVYERSDRVGGLLMYGIPNM-----KLD---KFV---VQRRV 1842 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCc----------EEEEEEecCCcCceeeecCCcc-----chh---HHH---HHHHH
Confidence 458999999 7777888766655422 2344444443334555554443 222 223 44556
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccC
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGC 188 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~ 188 (376)
+.|++.|++++.-.-..-|.-+|+|.+..
T Consensus 1843 ~ll~~egi~f~tn~eigk~vs~d~l~~~~ 1871 (2142)
T KOG0399|consen 1843 DLLEQEGIRFVTNTEIGKHVSLDELKKEN 1871 (2142)
T ss_pred HHHHhhCceEEeeccccccccHHHHhhcc
Confidence 77889999988766666676688887653
No 344
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.18 E-value=2.6e+02 Score=24.89 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=47.4
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhh---CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAK---DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~---~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
.++|.++||. +.......++|.+..+. -+.++.++ +. ++ ..+.
T Consensus 48 ~~~ifllG~~-~~~~~~~~~~l~~~yP~l~ivg~~~g~f---------------------------~~--~~----~~~i 93 (172)
T PF03808_consen 48 GKRIFLLGGS-EEVLEKAAANLRRRYPGLRIVGYHHGYF---------------------------DE--EE----EEAI 93 (172)
T ss_pred CCeEEEEeCC-HHHHHHHHHHHHHHCCCeEEEEecCCCC---------------------------Ch--hh----HHHH
Confidence 4689999865 66666677777765542 11222221 10 11 1223
Q ss_pred HHHHHHcCCcEEEEeCCCc--hhhHHHHhccCCCCe
Q 017159 159 RAFLEQAGARCIVMPCHIS--HAWHGDVSEGCSIPF 192 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA--H~~~d~L~~~~~vPv 192 (376)
++.+++.++|+++++.-+. ..|..+.++.++.++
T Consensus 94 ~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v 129 (172)
T PF03808_consen 94 INRINASGPDIVFVGLGAPKQERWIARHRQRLPAGV 129 (172)
T ss_pred HHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCE
Confidence 3457789999999988876 556777777777763
No 345
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=35.13 E-value=1.6e+02 Score=28.51 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=0.0
Q ss_pred EEEEc--CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 85 IGIIG--GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 85 IGIIG--GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
|-+.| |-++.=|.+=.+++++.+.+.-....|+|. +-.. +- .+ ..+.++..
T Consensus 38 i~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~--------------------gv~~-~t--~~----~i~~a~~a 90 (289)
T cd00951 38 LFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLA--------------------GAGY-GT--AT----AIAYAQAA 90 (289)
T ss_pred EEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEE--------------------ecCC-CH--HH----HHHHHHHH
Q ss_pred HHcCCcEEEEeCCCchh--------hHHHHhccCCCCee
Q 017159 163 EQAGARCIVMPCHISHA--------WHGDVSEGCSIPFL 193 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~--------~~d~L~~~~~vPvl 193 (376)
++.|||++++..--.+. +|+++.+.+++|++
T Consensus 91 ~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~ 129 (289)
T cd00951 91 EKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVI 129 (289)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEE
No 346
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=35.05 E-value=57 Score=28.94 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcC
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKL 208 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~ 208 (376)
++.|++.|++.+ .+|-+..-.+++.+.+.-++.++..-.+......+.|+
T Consensus 7 ~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gy 57 (164)
T cd07039 7 VETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAE 57 (164)
T ss_pred HHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHH
Confidence 467889999977 66766666678999764568888877775544444433
No 347
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=35.05 E-value=2.5e+02 Score=26.53 Aligned_cols=30 Identities=13% Similarity=-0.150 Sum_probs=18.3
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhcc
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEG 187 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~ 187 (376)
.++.|.+.|+|+|+..-+.....+.++.+.
T Consensus 49 ~i~~~~~~g~dlIi~~g~~~~~~~~~vA~~ 78 (258)
T cd06353 49 VLRELAAQGYDLIFGTSFGFMDAALKVAKE 78 (258)
T ss_pred HHHHHHHcCCCEEEECchhhhHHHHHHHHH
Confidence 345566789999988555444444444443
No 348
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=34.88 E-value=1.8e+02 Score=27.22 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=14.0
Q ss_pred CCeEEEEc-CCChHHHH
Q 017159 82 ANTIGIIG-GVSVSSTL 97 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~ 97 (376)
|++|+||. |||-+.++
T Consensus 1 m~~i~IIDyg~GNL~Sv 17 (204)
T COG0118 1 MMMVAIIDYGSGNLRSV 17 (204)
T ss_pred CCEEEEEEcCcchHHHH
Confidence 67899999 99999884
No 349
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=34.83 E-value=2.3e+02 Score=26.89 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=13.2
Q ss_pred HHHHHHhhCCCCEEEECCCc
Q 017159 277 IGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 277 ~~i~~L~~~gaDaVILGCTE 296 (376)
+.++.+.+.++|+||+.+++
T Consensus 103 ~~~~~l~~~~vdGiI~~~~~ 122 (327)
T PRK10423 103 RNLETLMQKRVDGLLLLCTE 122 (327)
T ss_pred HHHHHHHHcCCCEEEEeCCC
Confidence 34445566778888887654
No 350
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=34.79 E-value=1.8e+02 Score=28.57 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc--HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV--GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY 233 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I--veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y 233 (376)
+-.++.|+..|+|.++.-= .|. +.++..+++|+.++ .+..++++.+...+ .+-|+|... -...+-
T Consensus 108 ~~~a~ll~~~g~d~vit~D--lHs--~~~~~~f~ip~~~l~a~~~l~~~i~~~~~~--------~~viv~pd~-g~~~~A 174 (308)
T TIGR01251 108 KLVANLLETAGADRVLTVD--LHS--PQIQGFFDVPVDNLYASPVLAEYLKKKILD--------NPVVVSPDA-GGVERA 174 (308)
T ss_pred HHHHHHHHHcCCCEEEEec--CCh--HHhcCcCCCceecccCHHHHHHHHHhhCCC--------CCEEEEECC-chHHHH
Confidence 3345678888999765432 353 56777778887654 34567777654222 333444322 111222
Q ss_pred HHHHHhcCCceeecCcccc----ccchHHHHHHHhcCCh----H---HHHHHHHHHHHHHhhCCCCEEEECCCc
Q 017159 234 QEKLQNQGFEVVLPDKATM----EHVIIPTIEALNHRDM----E---GARNLLRIGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 234 ~~~L~~~G~evv~p~~~~q----~~~l~~~ie~lk~G~~----~---~a~~~l~~~i~~L~~~gaDaVILGCTE 296 (376)
....+..|..+........ +.........++ |.. + .+...+..+++.+.+.|+..|++.|||
T Consensus 175 ~~lA~~Lg~~~~~i~k~r~~~~~~~~~~~~~~~v~-g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th 247 (308)
T TIGR01251 175 KKVADALGCPLAIIDKRRISATNEVEVMNLVGDVE-GKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATH 247 (308)
T ss_pred HHHHHHhCCCEEEEEEEecCCCCEEEEEecccccC-CCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 2222233555443322110 000111111222 211 1 134567888888888999999999998
No 351
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=34.74 E-value=87 Score=30.69 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=52.3
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.++||||-.-+..|--||.+.+.+..+ .++++++..+ -.|+ ... ++|++.+ +.
T Consensus 14 p~~I~vITs~~gAa~~D~~~~~~~r~~-----~~~~~~~p~~--------------vQG~--~A~--~~I~~al----~~ 66 (319)
T PF02601_consen 14 PKRIAVITSPTGAAIQDFLRTLKRRNP-----IVEIILYPAS--------------VQGE--GAA--ASIVSAL----RK 66 (319)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHhCC-----CcEEEEEecc--------------cccc--chH--HHHHHHH----HH
Confidence 579999999999999999999987332 2344443321 1111 111 4454444 44
Q ss_pred HHHc----CCcEEEEeCCCchh---h-HH--HHh---ccCCCCeeccH
Q 017159 162 LEQA----GARCIVMPCHISHA---W-HG--DVS---EGCSIPFLHVG 196 (376)
Q Consensus 162 L~~~----Gad~IVIaCNTAH~---~-~d--~L~---~~~~vPvl~Iv 196 (376)
+.+. ++|+|||+=-.-+. | |+ .|. ..+++|||+-|
T Consensus 67 ~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 67 ANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAI 114 (319)
T ss_pred HHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEec
Confidence 5554 49999998766543 2 21 121 24678888653
No 352
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.72 E-value=3e+02 Score=25.97 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCcEEEEe-CCCc------hhhHHHHhccCCCCee-----ccHHHHHHHHHHhcCCCCcCCCCceEEEeec
Q 017159 157 HKRAFLEQAGARCIVMP-CHIS------HAWHGDVSEGCSIPFL-----HVGECVAKELKEAKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIa-CNTA------H~~~d~L~~~~~vPvl-----~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT 224 (376)
+.++.+.+.|+|-+.+. .+.+ ..++.++.+....|+- .-. +-++.+...|.. || +++|
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~-e~~~~~l~~Ga~--------kv-vigt 103 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRDI-EKAKRLLSLDVN--------AL-VFST 103 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCCH-HHHHHHHHCCCC--------EE-EECc
Confidence 34566778999977544 4432 1235555553223531 112 334555566654 77 6899
Q ss_pred chhhchHHHHHHHHhcCCceeecCccc-cccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKAT-MEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~~-q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.+--...++++..+.+|-+.++.+-+. .+..+. + .|. .+....+.+.++.+.+.|+..+|+
T Consensus 104 ~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~--~----~gw-~~~~~~~~e~~~~l~~~g~~~ii~ 165 (232)
T PRK13586 104 IVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVL--I----RGW-KEKSMEVIDGIKKVNELELLGIIF 165 (232)
T ss_pred hhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEE--c----cCC-eeCCCCHHHHHHHHHhcCCCEEEE
Confidence 876677788888888876655554443 121121 1 121 122224557777788888877775
No 353
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=34.70 E-value=3.6e+02 Score=25.92 Aligned_cols=85 Identities=15% Similarity=0.006 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchh
Q 017159 156 RHKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDAT 227 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T 227 (376)
.+.++.+.+.|||+|=|.+-+.- ++++.+++.+++|+ + +|..-..+.+.+++-+ . ++--|-...+.
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~pl-s-IDT~~~~v~eaaL~~~---~-G~~iINsIs~~ 101 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPL-C-IDSPNPAAIEAGLKVA---K-GPPLINSVSAE 101 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCE-E-EeCCCHHHHHHHHHhC---C-CCCEEEeCCCC
Confidence 34455677899999999987641 13566777778886 2 4433222222222100 0 12233443332
Q ss_pred h-chHHHHHHHHhcCCceee
Q 017159 228 L-SAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 228 ~-~s~~Y~~~L~~~G~evv~ 246 (376)
- +....-..++++|..+++
T Consensus 102 ~~~~~~~~~l~~~~g~~vv~ 121 (261)
T PRK07535 102 GEKLEVVLPLVKKYNAPVVA 121 (261)
T ss_pred CccCHHHHHHHHHhCCCEEE
Confidence 1 112233456777887775
No 354
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=34.68 E-value=1.1e+02 Score=29.49 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHIS 177 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTA 177 (376)
+.+.++.++++|+|.|++ .||.
T Consensus 168 ~~~~a~~~~~~G~d~i~~-~nt~ 189 (296)
T cd04740 168 IVEIARAAEEAGADGLTL-INTL 189 (296)
T ss_pred HHHHHHHHHHcCCCEEEE-ECCC
Confidence 345567788999999855 4443
No 355
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=34.26 E-value=1.5e+02 Score=29.83 Aligned_cols=46 Identities=24% Similarity=0.272 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHH---HHHhcCCceeecC
Q 017159 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQE---KLQNQGFEVVLPD 248 (376)
Q Consensus 195 Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~---~L~~~G~evv~p~ 248 (376)
..+...+.++..|. +|+.|++.+...+.+.+++ .|++.|+++.+.+
T Consensus 13 ~l~~l~~~l~~~~~--------~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~ 61 (376)
T cd08193 13 SLARLGELLAALGA--------KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFD 61 (376)
T ss_pred HHHHHHHHHHHcCC--------CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEEC
Confidence 34455555555443 3888777666555555554 4666787776543
No 356
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=34.21 E-value=3.6e+02 Score=26.12 Aligned_cols=86 Identities=8% Similarity=0.003 Sum_probs=55.7
Q ss_pred HHHHHHHcCCcEE-EEeCCCc-hhhHHHHhccCCCCee---ccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhc---
Q 017159 158 KRAFLEQAGARCI-VMPCHIS-HAWHGDVSEGCSIPFL---HVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLS--- 229 (376)
Q Consensus 158 ~~~~L~~~Gad~I-VIaCNTA-H~~~d~L~~~~~vPvl---~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~--- 229 (376)
.++..+++|++.+ ++=.... +..+.++.+.+++|+. +|=.+.++.+...|.. ||+ ++|.+.-+
T Consensus 43 ~A~~~~~~Ga~~lHvVDLg~~n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~--------rVv-IGS~av~~~~i 113 (253)
T TIGR02129 43 YAKLYKDDGVKGCHVIMLGPNNDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGAS--------HVI-VTSWLFTKGKF 113 (253)
T ss_pred HHHHHHHcCCCEEEEEECCCCcHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCC--------EEE-ECcHHHhCCCC
Confidence 4566888999876 3322221 2346777777777763 2223566667777764 787 68866443
Q ss_pred -hHHHHHHHHhcCCceeecCcccc
Q 017159 230 -AGFYQEKLQNQGFEVVLPDKATM 252 (376)
Q Consensus 230 -s~~Y~~~L~~~G~evv~p~~~~q 252 (376)
.+++++..+++|-+.++...+..
T Consensus 114 ~~~~~~~i~~~fG~~~IvvsiD~k 137 (253)
T TIGR02129 114 DLKRLKEIVSLVGKDRLIVDLSCR 137 (253)
T ss_pred CHHHHHHHHHHhCCCCEEEEEEEE
Confidence 77899999999877776665543
No 357
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=34.09 E-value=1.8e+02 Score=27.83 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=16.8
Q ss_pred CceEEEeecchhhchHHHHHH-------HHhcCCceee
Q 017159 216 GVRIGVLATDATLSAGFYQEK-------LQNQGFEVVL 246 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~~~-------L~~~G~evv~ 246 (376)
.+.||++-.. +.+.+|.+. ++++|+++++
T Consensus 63 ~~~Igvi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~ 98 (331)
T PRK14987 63 SRAIGVLLPS--LTNQVFAEVLRGIESVTDAHGYQTML 98 (331)
T ss_pred CCEEEEEeCC--CcchhHHHHHHHHHHHHHHCCCEEEE
Confidence 3578988653 344455543 4455777655
No 358
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=34.08 E-value=35 Score=31.13 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeec
Q 017159 155 LRHKRAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLH 194 (376)
Q Consensus 155 l~~~~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~ 194 (376)
+....+.+++.++|+| ++|- .+..+++++++.+++|++-
T Consensus 106 l~~~~~~i~~~~PD~vEilPg-~~p~vi~~i~~~~~~PiIA 145 (175)
T PF04309_consen 106 LETGIKQIEQSKPDAVEILPG-VMPKVIKKIREETNIPIIA 145 (175)
T ss_dssp HHHHHHHHHHHT-SEEEEESC-CHHHHHCCCCCCCSS-EEE
T ss_pred HHHHHHHHhhcCCCEEEEchH-HHHHHHHHHHHhcCCCEEe
Confidence 4555677889999999 9999 7777899999999999884
No 359
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.00 E-value=80 Score=30.29 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
+.+.++.++++|+|+|++...+
T Consensus 178 ~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 178 IVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred HHHHHHHHHHcCCCEEEEEccc
Confidence 4455677889999999886543
No 360
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=33.83 E-value=2.2e+02 Score=27.13 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=17.2
Q ss_pred CceEEEeecchhhchHHHHHH-------HHhcCCceeec
Q 017159 216 GVRIGVLATDATLSAGFYQEK-------LQNQGFEVVLP 247 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~~~-------L~~~G~evv~p 247 (376)
.+.||++-.. +.+.+|... ++++|+.+++-
T Consensus 59 ~~~Igvv~~~--~~~~f~~~l~~~i~~~~~~~g~~~~i~ 95 (329)
T TIGR01481 59 TTTVGVIIPD--ISNIYYAELARGIEDIATMYKYNIILS 95 (329)
T ss_pred CCEEEEEeCC--CCchhHHHHHHHHHHHHHHcCCEEEEE
Confidence 4579988743 344555543 44557766553
No 361
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=33.55 E-value=75 Score=29.69 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCC-chh-----hHHHHhccCCCCee
Q 017159 153 QNLRHKRAFLEQAGARCIVMPCHI-SHA-----WHGDVSEGCSIPFL 193 (376)
Q Consensus 153 ~~l~~~~~~L~~~Gad~IVIaCNT-AH~-----~~d~L~~~~~vPvl 193 (376)
+.+.+.++.+.+.|+|+|.+.-.| .+. +.+.+++.+++|++
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvi 57 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVI 57 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEE
Confidence 335556677889999999998554 221 25777887889987
No 362
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=33.53 E-value=1e+02 Score=30.54 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh--------h--HHHHhccCCCCeeccHH
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHA--------W--HGDVSEGCSIPFLHVGE 197 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~--------~--~d~L~~~~~vPvl~Ive 197 (376)
.+.++.|+++|+|.|.+=+-|... | +.++++.+++||+.-.+
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGd 202 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGE 202 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCC
Confidence 455677899999999997765321 2 56667777778776544
No 363
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=33.42 E-value=2.6e+02 Score=26.46 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCeecc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl~I 195 (376)
+.+.++.|++.|+|.|++-.-+.. .++.++++.+++|++-.
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~ 205 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIAS 205 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEe
Confidence 345567789999999888543331 23567777777887743
No 364
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.40 E-value=3.6e+02 Score=24.29 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=44.6
Q ss_pred HHHHHcCCcEEEEe-CCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMP-CHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIa-CNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.+.+.++|.|++. |......++.+.+ .++|++.+ ...+++.+.+.|. ++|
T Consensus 48 ~~~~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~i 118 (266)
T cd06278 48 RQLLQYRVDGVIVTSGTLSSELAEECRR-NGIPVVLINRYVDGPGVDAVCSDNYEAGRLAAELLLAKGC--------RRI 118 (266)
T ss_pred HHHHHcCCCEEEEecCCCCHHHHHHHhh-cCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHCCC--------ceE
Confidence 44667899988875 4332333555544 36676554 2334555665554 499
Q ss_pred EEeecchhh-----chHHHHHHHHhcCCce
Q 017159 220 GVLATDATL-----SAGFYQEKLQNQGFEV 244 (376)
Q Consensus 220 GlLaT~~T~-----~s~~Y~~~L~~~G~ev 244 (376)
++++.+... +..-|.+.+++.|.++
T Consensus 119 ~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~ 148 (266)
T cd06278 119 AFIGGPADTSTSRERERGFRDALAAAGVPV 148 (266)
T ss_pred EEEcCCCcccchHHHHHHHHHHHHHcCCCh
Confidence 999754321 1223777788888764
No 365
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=33.26 E-value=72 Score=28.45 Aligned_cols=65 Identities=14% Similarity=0.016 Sum_probs=40.9
Q ss_pred HHHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEE-eecch
Q 017159 158 KRAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGV-LATDA 226 (376)
Q Consensus 158 ~~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGl-LaT~~ 226 (376)
.++.|++.|++.| -+|-.....++|++.+.-++.++..-.+......+.|+- .-.+|.|+ +.|.+
T Consensus 3 l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgya----r~sg~~gv~~~t~G 69 (162)
T cd07037 3 LVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLA----KASGRPVAVVCTSG 69 (162)
T ss_pred HHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHH----HhhCCCEEEEECCc
Confidence 3567899999977 555555566788986555688887777665554444442 11235665 55544
No 366
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=33.25 E-value=55 Score=30.54 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=33.1
Q ss_pred HHHHHcCCcEEEEeCCCchhh---HHHHh------ccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 160 AFLEQAGARCIVMPCHISHAW---HGDVS------EGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~---~d~L~------~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
+.|...|.|++.++-| |.| .+.+. +..+++.++.-.... .+...-+. ...+.|||++|-..
T Consensus 71 ~~L~~~G~d~~tlaNN--H~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~-~~~~~~i~---~~~g~kVg~ig~t~ 140 (239)
T cd07381 71 DALKAAGFDVVSLANN--HTLDYGEEGLLDTLDALDEAGIAHAGAGRNLE-EARRPAIL---EVNGIKVAFLAYTY 140 (239)
T ss_pred HHHHHhCCCEEEcccc--cccccchHHHHHHHHHHHHcCCceeECCCCHH-HhcCcEEE---EECCEEEEEEEEEC
Confidence 4577899999999977 443 33332 234788877532211 11110000 01245899988754
No 367
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=33.23 E-value=2e+02 Score=28.98 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh-chHHHH---HHHHhcCCceeecC
Q 017159 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATL-SAGFYQ---EKLQNQGFEVVLPD 248 (376)
Q Consensus 195 Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~-~s~~Y~---~~L~~~G~evv~p~ 248 (376)
.++.+.+.++..| +|+.|++.+..+ .++++. +.|++.|+++.+.+
T Consensus 13 ~l~~l~~~~~~~g---------~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~ 61 (380)
T cd08185 13 KLNELGEEALKPG---------KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFD 61 (380)
T ss_pred HHHHHHHHHHhcC---------CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeC
Confidence 3455555555533 388888876653 555554 45666788776543
No 368
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=33.21 E-value=2.7e+02 Score=25.58 Aligned_cols=122 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch-----hhHHHHh---ccCCCCee---ccHH-HHHHHHHHhcCCCCcCCCCceEEEe
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISH-----AWHGDVS---EGCSIPFL---HVGE-CVAKELKEAKLKPLEAGSGVRIGVL 222 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH-----~~~d~L~---~~~~vPvl---~Ive-at~~~~~~~g~k~~~~~~~~rVGlL 222 (376)
..+.++.+++.|+|.+.+..-... ..++.++ +.+++|++ +|-. +-++.+...|.. +| ++
T Consensus 32 ~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~--------~v-il 102 (233)
T PRK00748 32 PVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVS--------RV-II 102 (233)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCC--------EE-EE
Q ss_pred ecchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 223 ATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 223 aT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
+|..--....+.+..+.+ .+.++..-+.....+ ...|..+.......+.++.+.+.|++.|++
T Consensus 103 g~~~l~~~~~l~ei~~~~-~~~i~vsid~k~~~v------~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~ 165 (233)
T PRK00748 103 GTAAVKNPELVKEACKKF-PGKIVVGLDARDGKV------ATDGWLETSGVTAEDLAKRFEDAGVKAIIY 165 (233)
T ss_pred CchHHhCHHHHHHHHHHh-CCCceeeeeccCCEE------EEccCeecCCCCHHHHHHHHHhcCCCEEEE
No 369
>COG1903 CbiD Cobalamin biosynthesis protein CbiD [Coenzyme metabolism]
Probab=33.16 E-value=1.4e+02 Score=30.52 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeC-CCchhhHHHHhccCCCCe---ec---cHHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPC-HISHAWHGDVSEGCSIPF---LH---VGECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaC-NTAH~~~d~L~~~~~vPv---l~---Iveat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
+....-+...++.....|.+.++++- |+. .+..++.+..|- +- .+-...+++.+.+++ +|-+
T Consensus 185 ~a~~~si~~~l~~~r~~~~~~iv~~~Gn~g---~~~a~~~~~~~~~~~v~~~n~vG~~l~~a~~~~~~--------~i~i 253 (367)
T COG1903 185 EAYLASIRSELDVARAAGLDHVVFCPGNTG---EDYARKLFILPEQAIVKMGNFVGSMLKEARELGVK--------EILI 253 (367)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEccChhH---HHHHHHhcCCchHHHhhHHHHHHHHHHHHHhcCCC--------EEEE
Confidence 44555556556666666888776654 443 444455444432 22 344556777776664 8999
Q ss_pred eecchh
Q 017159 222 LATDAT 227 (376)
Q Consensus 222 LaT~~T 227 (376)
+|=++-
T Consensus 254 ~G~pGK 259 (367)
T COG1903 254 FGHPGK 259 (367)
T ss_pred EcChHH
Confidence 988774
No 370
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=33.16 E-value=4.2e+02 Score=28.24 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchh-------hHHHHhccCCCCe
Q 017159 153 QNLRHKRAFLEQAGARCIVMPCHISHA-------WHGDVSEGCSIPF 192 (376)
Q Consensus 153 ~~l~~~~~~L~~~Gad~IVIaCNTAH~-------~~d~L~~~~~vPv 192 (376)
+.+.+.++.+.+.|||.|-|.|-...+ +++.+++.+++|+
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pI 211 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALDSPV 211 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcE
Confidence 446666777889999999999976533 3566676667774
No 371
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=32.93 E-value=4.2e+02 Score=24.86 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=53.8
Q ss_pred eEEEeecc-h--h--hchHHHHHHHHhcCCceeecC--ccccccchHHHHHHHh-c-CChHH----HHHHHHHHHHHHhh
Q 017159 218 RIGVLATD-A--T--LSAGFYQEKLQNQGFEVVLPD--KATMEHVIIPTIEALN-H-RDMEG----ARNLLRIGIQLLLV 284 (376)
Q Consensus 218 rVGlLaT~-~--T--~~s~~Y~~~L~~~G~evv~p~--~~~q~~~l~~~ie~lk-~-G~~~~----a~~~l~~~i~~L~~ 284 (376)
+++++... . + .+..-|.+.++++|+++.... ...... ....++.+. . .+.+. .......+++.+.+
T Consensus 150 ~i~~~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~l~al~~ 228 (295)
T PRK10653 150 KVIQLEGIAGTSAARERGEGFKQAVAAHKFNVLASQPADFDRTK-GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQT 228 (295)
T ss_pred eEEEEEccCCCccHHHHHHHHHHHHhhCCCEEEEecCCCCCHHH-HHHHHHHHHHhCCCcCEEEECCChhHHHHHHHHHH
Confidence 56666532 2 1 223348888999998765321 111111 112222332 1 11111 11222345566667
Q ss_pred CCC-CEEEECCCccccccCC-CCCCC-CeeeehHHHHHHHHHHHHHh
Q 017159 285 RAV-NAVIIGSDEMQGVLPK-DDPLL-KKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 285 ~ga-DaVILGCTElpll~~~-~~~~~-vpvIDp~~~lA~a~v~~a~~ 328 (376)
.|. |.-|.|+-..+..... ..+.. ..+--+...+++.+++.+..
T Consensus 229 ~G~~dv~vig~d~~~~~~~~~~~~~~~tti~~~~~~~g~~a~~~l~~ 275 (295)
T PRK10653 229 AGKSDVMVVGFDGTPDGIKAVNRGKLAATIAQQPDQIGAIGVETADK 275 (295)
T ss_pred cCCCceEEEEeCCCHHHHHHHHcCCceEEeecCHHHHHHHHHHHHHH
Confidence 776 8999999888754211 11111 13334566677777776654
No 372
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=32.76 E-value=1.8e+02 Score=29.47 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHH---HHHhcCCceeecCc
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQE---KLQNQGFEVVLPDK 249 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~---~L~~~G~evv~p~~ 249 (376)
++...+.++..| +|+.|++.+...+++++++ .|++.|+++.+.+.
T Consensus 11 l~~l~~~~~~~g---------~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~ 58 (386)
T cd08191 11 RRQLPRLAARLG---------SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDG 58 (386)
T ss_pred HHHHHHHHHHcC---------CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECC
Confidence 444445555543 3888888776666677665 46677888766543
No 373
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=32.57 E-value=2e+02 Score=28.71 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhc-hHH---HHHHHHhcCCceeecC
Q 017159 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATLS-AGF---YQEKLQNQGFEVVLPD 248 (376)
Q Consensus 195 Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~-s~~---Y~~~L~~~G~evv~p~ 248 (376)
..+.+.+.+++.| +|+.|++.+...+ .+. ..+.|++.|+++.+.+
T Consensus 13 ~l~~l~~~~~~~g---------~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~ 61 (357)
T cd08181 13 CVEKHGEELAALG---------KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFD 61 (357)
T ss_pred HHHHHHHHHHHcC---------CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeC
Confidence 3444445555543 3888887776634 443 4566777788776543
No 374
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.33 E-value=4.3e+02 Score=24.85 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=14.0
Q ss_pred HHHHHHhhCCCCEEEECC
Q 017159 277 IGIQLLLVRAVNAVIIGS 294 (376)
Q Consensus 277 ~~i~~L~~~gaDaVILGC 294 (376)
+.+..+.+.|||.+|.|.
T Consensus 183 eti~~l~~aGaDi~V~GS 200 (223)
T PRK08745 183 DNIGAIAAAGADTFVAGS 200 (223)
T ss_pred HHHHHHHHcCCCEEEECh
Confidence 345567788999999994
No 375
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=32.13 E-value=92 Score=30.20 Aligned_cols=46 Identities=22% Similarity=0.395 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---------------HHHHhccCCCCeecc
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAW---------------HGDVSEGCSIPFLHV 195 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~---------------~d~L~~~~~vPvl~I 195 (376)
+++++...+.++.|++.|+|.|++--..--+| ..+++..+++| +++
T Consensus 24 ~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p-~Gv 84 (257)
T TIGR00259 24 NAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIP-LGI 84 (257)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCC-eee
Confidence 78999999999999999999999855444333 45677778778 444
No 376
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.11 E-value=3.1e+02 Score=25.79 Aligned_cols=120 Identities=10% Similarity=-0.014 Sum_probs=67.1
Q ss_pred HHHHHHH-cCCcEEEEe-CCCc---h----hhHHHHhccCCCCee-----ccHHHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 158 KRAFLEQ-AGARCIVMP-CHIS---H----AWHGDVSEGCSIPFL-----HVGECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 158 ~~~~L~~-~Gad~IVIa-CNTA---H----~~~d~L~~~~~vPvl-----~Iveat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
.++.+.+ .|||-+.|. .+.+ | ..+.++.+.+.+|+- .-.| .++.+...|.. || +++
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e-~v~~~l~~Ga~--------kv-vig 105 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKS-QIMDYFAAGIN--------YC-IVG 105 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHH-HHHHHHHCCCC--------EE-EEC
Confidence 3455666 699987554 3333 1 246777777788853 1133 34445556654 77 789
Q ss_pred cchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECC
Q 017159 224 TDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGS 294 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGC 294 (376)
|..--...++++..+++|-.++ ..-+..+..+. ..|..+.+.-.+.+.++.+.+.|+..+|+-.
T Consensus 106 t~a~~~~~~l~~~~~~fg~~iv-vslD~~~g~v~------~~gw~~~~~~~~~~~~~~~~~~g~~~ii~td 169 (234)
T PRK13587 106 TKGIQDTDWLKEMAHTFPGRIY-LSVDAYGEDIK------VNGWEEDTELNLFSFVRQLSDIPLGGIIYTD 169 (234)
T ss_pred chHhcCHHHHHHHHHHcCCCEE-EEEEeeCCEEE------ecCCcccCCCCHHHHHHHHHHcCCCEEEEec
Confidence 9776666788888888864433 33322221110 1121122222345666677777888777544
No 377
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=31.96 E-value=4e+02 Score=24.38 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=42.3
Q ss_pred HHHHHHcCCcEEEEeCCCc---hhhHHHHhccCCCCeeccH-----------------------HHHHHHHHHhcCCCCc
Q 017159 159 RAFLEQAGARCIVMPCHIS---HAWHGDVSEGCSIPFLHVG-----------------------ECVAKELKEAKLKPLE 212 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA---H~~~d~L~~~~~vPvl~Iv-----------------------eat~~~~~~~g~k~~~ 212 (376)
++.|.+.++|.|++..... ...++++++ .++|++.+- ...++.+.+..
T Consensus 48 i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~-~~iPvV~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~----- 121 (273)
T cd06309 48 IRSFIAQGVDVIILAPVVETGWDPVLKEAKA-AGIPVILVDRGVDVKDDSLYVTFIGSDFVEEGRRAADWLAKAT----- 121 (273)
T ss_pred HHHHHHcCCCEEEEcCCccccchHHHHHHHH-CCCCEEEEecCcCCccCcceeeEecCChHHHHHHHHHHHHHHc-----
Confidence 3456677899887754332 234555543 245543331 12345555541
Q ss_pred CCCCceEEEeecchh-----hchHHHHHHHHhc-CCce
Q 017159 213 AGSGVRIGVLATDAT-----LSAGFYQEKLQNQ-GFEV 244 (376)
Q Consensus 213 ~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~-G~ev 244 (376)
...++|++++.... .+..-|.+.++++ ++++
T Consensus 122 -~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~ 158 (273)
T cd06309 122 -GGKGNIVELQGTVGSSVAIDRKKGFAEVIKKYPNMKI 158 (273)
T ss_pred -CCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEE
Confidence 12348999976432 2233478888887 4554
No 378
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=31.83 E-value=1.4e+02 Score=32.08 Aligned_cols=89 Identities=16% Similarity=0.070 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCcEEEEeCCC-chhh-HHHHhccCCCCeeccHHH-HHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH
Q 017159 157 HKRAFLEQAGARCIVMPCHI-SHAW-HGDVSEGCSIPFLHVGEC-VAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY 233 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNT-AH~~-~d~L~~~~~vPvl~Ivea-t~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y 233 (376)
-.++.|.+.|+.-+|||=-+ ..+. +...+. -++-+..-+|+ .+-. -+.|+-. .+++-|+|+.|.||...++|
T Consensus 13 v~~eeL~r~GV~~vvicPGSRSTPLala~~~~-~~i~~hv~~DERsagF-fALGlAK---as~rPVavi~TSGTA~ANl~ 87 (566)
T COG1165 13 VFLEELARLGVRDVVICPGSRSTPLALAAAAH-DAITVHVHIDERSAGF-FALGLAK---ASKRPVAVICTSGTAVANLY 87 (566)
T ss_pred HHHHHHHHcCCcEEEECCCCCCcHHHHHHHhc-CCeEEEEecccchHHH-HHHhhhh---hcCCCEEEEEcCcchhhhcc
Confidence 34567889999887776433 2333 222222 14444333444 3332 2233310 23457999999999999999
Q ss_pred HHHHHhc--CCceeecCcc
Q 017159 234 QEKLQNQ--GFEVVLPDKA 250 (376)
Q Consensus 234 ~~~L~~~--G~evv~p~~~ 250 (376)
...+|++ ++..++-..+
T Consensus 88 PAViEA~~srvpLIVLTAD 106 (566)
T COG1165 88 PAVIEANLSRVPLIVLTAD 106 (566)
T ss_pred HHHHhhhhcCCceEEEeCC
Confidence 9999886 7777776544
No 379
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=31.74 E-value=3.5e+02 Score=25.78 Aligned_cols=78 Identities=12% Similarity=0.198 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh---HHHHhccCCCC-----eeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW---HGDVSEGCSIP-----FLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~---~d~L~~~~~vP-----vl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
..+.++.|.+.|..++++.-|+...- .+.++. .+++ ++.-..+++..+++... ..++|-++|+++
T Consensus 23 a~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~-~G~~~~~~~i~ts~~~~~~~l~~~~~------~~~~v~~iG~~~ 95 (279)
T TIGR01452 23 APELLDRLARAGKAALFVTNNSTKSRAEYALKFAR-LGFNGLAEQLFSSALCAARLLRQPPD------APKAVYVIGEEG 95 (279)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH-cCCCCChhhEecHHHHHHHHHHhhCc------CCCEEEEEcCHH
Confidence 34455678889988777776664322 344533 3333 45555666777776322 235899999863
Q ss_pred hhchHHHHHHHHhcCCcee
Q 017159 227 TLSAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 227 T~~s~~Y~~~L~~~G~evv 245 (376)
..+.++++|++++
T Consensus 96 ------~~~~l~~~g~~~~ 108 (279)
T TIGR01452 96 ------LRAELDAAGIRLA 108 (279)
T ss_pred ------HHHHHHHCCCEEe
Confidence 3556778898865
No 380
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=31.62 E-value=2e+02 Score=28.80 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH---HHHHHhcCCceeec
Q 017159 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY---QEKLQNQGFEVVLP 247 (376)
Q Consensus 195 Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y---~~~L~~~G~evv~p 247 (376)
.++...+.+++.|. +|+.|++.+...+++++ .+.|++.|+++.+.
T Consensus 10 ~l~~l~~~l~~~~~--------~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~ 57 (370)
T cd08551 10 AIEKLGEEIKNLGG--------RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIF 57 (370)
T ss_pred HHHHHHHHHHHcCC--------CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEE
Confidence 34555666666544 38888877666554544 34566667776644
No 381
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=31.48 E-value=2.5e+02 Score=27.94 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=68.2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc--HHHHHHHHHHh-cCCCCcCCCCceEEEeecchhhchHHHH
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV--GECVAKELKEA-KLKPLEAGSGVRIGVLATDATLSAGFYQ 234 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I--veat~~~~~~~-g~k~~~~~~~~rVGlLaT~~T~~s~~Y~ 234 (376)
.++.|+..|+|.++.- -.|. ++++.-+++|+.++ .+..++++.+. +. ...-|++-+..-. .+-.
T Consensus 116 va~ll~~~g~d~vitv--D~H~--~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~--------~~~vVVsPD~Ga~-~rA~ 182 (319)
T PRK04923 116 AAKMISAMGADRVLTV--DLHA--DQIQGFFDVPVDNVYASPLLLADIWRAYGT--------DNLIVVSPDVGGV-VRAR 182 (319)
T ss_pred HHHHHHhcCCCEEEEE--eCCh--HHHHhhcCCCceeeeChHHHHHHHHHhcCC--------CCCEEEEECCchH-HHHH
Confidence 4566888899977643 2463 67777788887664 34456666442 11 1344555543211 1122
Q ss_pred HHHHhcC-CceeecCcccc--c-cchHHHHHHHhcCC-------hHHHHHHHHHHHHHHhhCCCCEEEECCCccc
Q 017159 235 EKLQNQG-FEVVLPDKATM--E-HVIIPTIEALNHRD-------MEGARNLLRIGIQLLLVRAVNAVIIGSDEMQ 298 (376)
Q Consensus 235 ~~L~~~G-~evv~p~~~~q--~-~~l~~~ie~lk~G~-------~~~a~~~l~~~i~~L~~~gaDaVILGCTElp 298 (376)
...+..| .++.+-.+... . ......+..++ |. +-.+...+.++.+.|++.||..|.+.|||--
T Consensus 183 ~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~-Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgv 256 (319)
T PRK04923 183 AVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQ-GKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPV 256 (319)
T ss_pred HHHHHcCCCCEEEeccccCCCCceEEEecccCCC-CCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcc
Confidence 2222233 44444433211 0 00111122222 21 1123466888889999999999999999943
No 382
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=31.48 E-value=83 Score=30.77 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWH 181 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~ 181 (376)
++.++.++-|+|+++++--|+|=.|
T Consensus 152 ~a~~Fv~~TgvD~LAvsiGt~HG~Y 176 (276)
T cd00947 152 EAEEFVEETGVDALAVAIGTSHGAY 176 (276)
T ss_pred HHHHHHHHHCCCEEEeccCcccccc
Confidence 3445667789999999999999765
No 383
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.44 E-value=2e+02 Score=28.26 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.+.+++|.+.|+|.|++++.|.-..
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttGE~~ 52 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTGESP 52 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccch
Confidence 56667899999999999999987543
No 384
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=31.41 E-value=51 Score=32.82 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHG 182 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d 182 (376)
++.+|.++-|+|+++++.-|+|=.|.
T Consensus 159 eA~~Fv~~TgvD~LAvaiGt~HG~Yk 184 (307)
T PRK05835 159 EAEQFVKESQVDYLAPAIGTSHGAFK 184 (307)
T ss_pred HHHHHHHhhCCCEEEEccCccccccC
Confidence 44566778899999999999997664
No 385
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=31.40 E-value=2.2e+02 Score=26.29 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=9.1
Q ss_pred HHHhhCCCCEEEECC
Q 017159 280 QLLLVRAVNAVIIGS 294 (376)
Q Consensus 280 ~~L~~~gaDaVILGC 294 (376)
..+.+.|||.+|+|.
T Consensus 181 ~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 181 KQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHT--EEEESH
T ss_pred HHHHHcCCCEEEECH
Confidence 445667899988883
No 386
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=31.35 E-value=2.2e+02 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=21.3
Q ss_pred ceEEEeecchhhc-hHH---HHHHHHhcCCceeecC
Q 017159 217 VRIGVLATDATLS-AGF---YQEKLQNQGFEVVLPD 248 (376)
Q Consensus 217 ~rVGlLaT~~T~~-s~~---Y~~~L~~~G~evv~p~ 248 (376)
+|+.|++.+.+.+ .+. ..+.|++.|+++.+.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~ 62 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYN 62 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeC
Confidence 3888887766654 443 4566777888776654
No 387
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.32 E-value=3.7e+02 Score=25.61 Aligned_cols=127 Identities=9% Similarity=0.106 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCcEEEEeC-CCc---h----hhHHHHhccCCCCee-----ccHHHHHHHHHHhcCCCCcCCCCceEEEe
Q 017159 156 RHKRAFLEQAGARCIVMPC-HIS---H----AWHGDVSEGCSIPFL-----HVGECVAKELKEAKLKPLEAGSGVRIGVL 222 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaC-NTA---H----~~~d~L~~~~~vPvl-----~Iveat~~~~~~~g~k~~~~~~~~rVGlL 222 (376)
.+.++++.+.|++-+.+.= +.+ + ..+.++.+.+++||. +-++. ++.+...|.. +| ++
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d-~~~l~~~G~~--------~v-vi 102 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQ-AKKIFSLGVE--------KV-SI 102 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHH-HHHHHHCCCC--------EE-EE
Confidence 4456778899998776642 222 1 236777777788863 12333 3334444543 44 57
Q ss_pred ecchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 223 ATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 223 aT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
+|...-...+.++..+.++-+.++.+-+...... .-.+-...|-.+.+.....+.++.+.+.|++.+++-
T Consensus 103 gs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~-~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~ 172 (258)
T PRK01033 103 NTAALEDPDLITEAAERFGSQSVVVSIDVKKNLG-GKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLN 172 (258)
T ss_pred ChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCC-CcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEE
Confidence 8754344455667666665333332222111000 000000011111112223455566777899988874
No 388
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=31.32 E-value=80 Score=30.05 Aligned_cols=41 Identities=12% Similarity=-0.097 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh----h--HHHHhccCC-CCeecc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA----W--HGDVSEGCS-IPFLHV 195 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~----~--~d~L~~~~~-vPvl~I 195 (376)
..+.++.++++|+|.|.+-+.+... | +.++++.++ +|||+.
T Consensus 150 ~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgN 197 (231)
T TIGR00736 150 ELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGN 197 (231)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEE
Confidence 3456677999999999886655321 1 444455543 555554
No 389
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=31.08 E-value=3.3e+02 Score=25.49 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=50.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCch-------hhHHHHhccCCCCee---ccH-HHHHHHHHHhcCCCCcCCCCceEEEeecc
Q 017159 157 HKRAFLEQAGARCIVMPCHISH-------AWHGDVSEGCSIPFL---HVG-ECVAKELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH-------~~~d~L~~~~~vPvl---~Iv-eat~~~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
+.++.+++.|+|.+.+.=-.+. ..+.++.+.+.+|+. ||= .+-++.+...|.. || +++|.
T Consensus 39 ~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~--------~v-iigt~ 109 (233)
T cd04723 39 DVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGAS--------RV-IVGTE 109 (233)
T ss_pred HHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCC--------eE-EEcce
Confidence 3456778889998866543331 136666666677753 110 1334445555543 66 68997
Q ss_pred hhhchHHHHHHHHhcCCceeecCcc
Q 017159 226 ATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 226 ~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
.--. .+.++.++++|-+-+++.-+
T Consensus 110 ~~~~-~~~~~~~~~~~~~~iivslD 133 (233)
T cd04723 110 TLPS-DDDEDRLAALGEQRLVLSLD 133 (233)
T ss_pred eccc-hHHHHHHHhcCCCCeEEEEe
Confidence 7555 78888888887533444433
No 390
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=30.77 E-value=5e+02 Score=25.07 Aligned_cols=115 Identities=13% Similarity=0.151 Sum_probs=56.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHH
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQ 238 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~ 238 (376)
++.+.++|+|.++||=-- +-+ .+...+.+++.|+ ....+.++.|-.. ..+...+
T Consensus 112 ~~~~~~aGvdgviipDLP---------------~ee-~~~~~~~~~~~gi---------~~I~lv~PtT~~e-ri~~i~~ 165 (263)
T CHL00200 112 IKKISQAGVKGLIIPDLP---------------YEE-SDYLISVCNLYNI---------ELILLIAPTSSKS-RIQKIAR 165 (263)
T ss_pred HHHHHHcCCeEEEecCCC---------------HHH-HHHHHHHHHHcCC---------CEEEEECCCCCHH-HHHHHHH
Confidence 355778999999998542 211 3445556666665 3555666666333 3444444
Q ss_pred hc-CCceeec--Cccccc----cchHHHHHHHhcC-ChHHH----HHHHHHHHHHHhhCCCCEEEECCCccccc
Q 017159 239 NQ-GFEVVLP--DKATME----HVIIPTIEALNHR-DMEGA----RNLLRIGIQLLLVRAVNAVIIGSDEMQGV 300 (376)
Q Consensus 239 ~~-G~evv~p--~~~~q~----~~l~~~ie~lk~G-~~~~a----~~~l~~~i~~L~~~gaDaVILGCTElpll 300 (376)
.. |+-.++. ....+. ..+...++.++.. +.+-. -.. .+-++.+.+.|||.+|.|..=+-.+
T Consensus 166 ~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~-~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 166 AAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGIST-SEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred hCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCC-HHHHHHHHhcCCCEEEECHHHHHHH
Confidence 33 4444432 211111 1122333333321 00000 000 2223446667899999997655544
No 391
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=30.69 E-value=1.6e+02 Score=28.87 Aligned_cols=44 Identities=11% Similarity=-0.031 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCc---hhh---HHHHhccCCCCeecc
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHIS---HAW---HGDVSEGCSIPFLHV 195 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTA---H~~---~d~L~~~~~vPvl~I 195 (376)
.++.+.+ ++.+.+.|.+...+...+. |-. +..+....++|+|.|
T Consensus 98 ~eLA~~i---~~~~~~~Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~i 147 (294)
T cd07372 98 VELAEAC---CEEGRKAGLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGI 147 (294)
T ss_pred HHHHHHH---HHHHHHCCCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEE
Confidence 3454444 3556678998875333322 322 556666678898855
No 392
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=30.66 E-value=2.2e+02 Score=26.64 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEK 236 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~ 236 (376)
..++.|.+.||+..|+++.- +.-+..+.+...+..+. +.-...- . ..--+.+.||+..--....-+.
T Consensus 26 rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~--~~~~~~~----~------~~~~lviaAt~d~~ln~~i~~~ 92 (210)
T COG1648 26 RKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIE--REFDAED----L------DDAFLVIAATDDEELNERIAKA 92 (210)
T ss_pred HHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhh--cccChhh----h------cCceEEEEeCCCHHHHHHHHHH
Confidence 35677889999999999987 66566666655533332 1111110 1 0125778888775444444445
Q ss_pred HHhcCCceeecCccccccchHHH
Q 017159 237 LQNQGFEVVLPDKATMEHVIIPT 259 (376)
Q Consensus 237 L~~~G~evv~p~~~~q~~~l~~~ 259 (376)
..++++-|.+.+.+.--+++.|.
T Consensus 93 a~~~~i~vNv~D~p~~~~f~~Pa 115 (210)
T COG1648 93 ARERRILVNVVDDPELCDFIFPA 115 (210)
T ss_pred HHHhCCceeccCCcccCceecce
Confidence 67778888887765433444443
No 393
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.65 E-value=1.8e+02 Score=29.80 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=49.6
Q ss_pred cCCcEEEEeCCCc--hhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcC
Q 017159 165 AGARCIVMPCHIS--HAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQG 241 (376)
Q Consensus 165 ~Gad~IVIaCNTA--H~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G 241 (376)
.++|++|+.-.-. |+.+...++ -++|+++=.+...+.....+ .+.|||-||.| |--+.+....|+..|
T Consensus 66 ~~~d~vv~spgi~~~~p~~~~a~~-~~i~v~~~~~~~~~~~~~~~--------~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 66 NGFDILALSPGISERQPDIEAFKQ-NGGRVLGDIELLADIVNRRG--------DKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred hCCCEEEECCCCCCCCHHHHHHHH-cCCcEEEhHHHHHHhhhcCC--------CCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 3789888766543 666666654 48999997777655443211 24899999988 334556778888888
Q ss_pred Cceee
Q 017159 242 FEVVL 246 (376)
Q Consensus 242 ~evv~ 246 (376)
..+..
T Consensus 137 ~~~~~ 141 (445)
T PRK04308 137 LDTVI 141 (445)
T ss_pred CCeEE
Confidence 77544
No 394
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=30.57 E-value=1.9e+02 Score=30.38 Aligned_cols=40 Identities=13% Similarity=0.336 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhh-HHHH---hccCCCCeecc
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAW-HGDV---SEGCSIPFLHV 195 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L---~~~~~vPvl~I 195 (376)
...+.+|.+.|-+..+++|-|.-+. +++| .+++++||++.
T Consensus 118 ~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 118 GKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred HHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 4456788889999999999998776 5555 46789999886
No 395
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=30.53 E-value=1.3e+02 Score=31.56 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=41.0
Q ss_pred cCCcEEEEeCCCchhhHHHHhc--cCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcC
Q 017159 165 AGARCIVMPCHISHAWHGDVSE--GCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQG 241 (376)
Q Consensus 165 ~Gad~IVIaCNTAH~~~d~L~~--~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G 241 (376)
.+++. ||..|....--.++.+ .-++|+++=.+...+.++.. ..|+|-||-| |-.+......|++.|
T Consensus 65 ~~~~~-VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm~~~----------~~iaVaGTHGKTTTTsmla~vl~~~g 133 (459)
T COG0773 65 LDADV-VVVSNAIKEDNPEIVAALERGIPVISRAEMLAELMRFR----------TSIAVAGTHGKTTTTSMLAWVLEAAG 133 (459)
T ss_pred CCCce-EEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHHhCC----------eeEEEeCCCCchhHHHHHHHHHHhCC
Confidence 35555 4444443322233332 23799999887777766542 2799999976 344556666677765
Q ss_pred Cce
Q 017159 242 FEV 244 (376)
Q Consensus 242 ~ev 244 (376)
.+.
T Consensus 134 ldP 136 (459)
T COG0773 134 LDP 136 (459)
T ss_pred CCC
Confidence 543
No 396
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=30.51 E-value=4.2e+02 Score=26.48 Aligned_cols=75 Identities=8% Similarity=0.051 Sum_probs=43.7
Q ss_pred HHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 161 FLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
.|-+.|+-+|+=|..-...- +..+.....||++.. ..+.++-+...+.+ +|.+
T Consensus 51 ~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~~~~~~~~~i~~~P~~~~Ai~diI~~~~W~--------~v~i 122 (364)
T cd06390 51 SQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQDALISVIEHYKWQ--------KFVY 122 (364)
T ss_pred HHhhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCCCCCCCceEEEeChhHHHHHHHHHHHcCCc--------EEEE
Confidence 35567999888776532222 567777888998863 34455555555554 7888
Q ss_pred eecchhhchHHHH---HHHHhcCCce
Q 017159 222 LATDATLSAGFYQ---EKLQNQGFEV 244 (376)
Q Consensus 222 LaT~~T~~s~~Y~---~~L~~~G~ev 244 (376)
+.-.. -.....+ +.+++.|.++
T Consensus 123 IYd~d-~g~~~lq~l~~~~~~~~~~I 147 (364)
T cd06390 123 IYDAD-RGLSVLQKVLDTAAEKNWQV 147 (364)
T ss_pred EEeCC-ccHHHHHHHHHhhhccCcee
Confidence 87433 2222233 3344456554
No 397
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=30.47 E-value=3.1e+02 Score=26.00 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=31.3
Q ss_pred cCcchHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH
Q 017159 143 QLDHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE 197 (376)
Q Consensus 143 ~~~~~~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive 197 (376)
|++. .++...+. .--++.|| +.|=||+.-- +.++++.+++|||+|+.
T Consensus 28 pl~~--~~iv~~mA---~Aa~~gGA--vgiR~~gv~d-Ikai~~~v~vPIIGIiK 74 (229)
T COG3010 28 PLDS--PEIVAAMA---LAAEQGGA--VGIRIEGVED-IKAIRAVVDVPIIGIIK 74 (229)
T ss_pred CCcc--hhHHHHHH---HHHHhCCc--ceEeecchhh-HHHHHhhCCCCeEEEEe
Confidence 4554 55544443 44456666 4567787433 77899999999999964
No 398
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=30.38 E-value=1.7e+02 Score=29.62 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh-HHHHh---ccCCCCeec---------cHHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW-HGDVS---EGCSIPFLH---------VGECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~---~~~~vPvl~---------Iveat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
+...+.+|.+.|-.+++.||-|.-+. .++|+ ++.++|+|. ++=-++++++++|+ -|-+
T Consensus 156 IaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~---------Dvvl 226 (340)
T COG0552 156 IAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGI---------DVVL 226 (340)
T ss_pred HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCC---------CEEE
Confidence 44556789999999999999998776 56665 567888887 33334556666554 3667
Q ss_pred eecchhhchH
Q 017159 222 LATDATLSAG 231 (376)
Q Consensus 222 LaT~~T~~s~ 231 (376)
+=|.|-+.+.
T Consensus 227 iDTAGRLhnk 236 (340)
T COG0552 227 IDTAGRLHNK 236 (340)
T ss_pred EeCcccccCc
Confidence 7777766543
No 399
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=30.29 E-value=5.4e+02 Score=25.36 Aligned_cols=155 Identities=23% Similarity=0.253 Sum_probs=76.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHHHhhh-CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 84 TIGIIGGVSVSSTLNFLGKLVWYSAK-DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 84 ~IGIIGGmGp~AT~~f~~kI~~~~~~-~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
+||-+.|+=.- .++|.+...+ +++...+.++++-...|..++... ....+... ..+.++.|
T Consensus 18 ~iG~FDGvH~G-----Hq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~-----~~~~~l~t--------~eeR~~~l 79 (305)
T PRK05627 18 TIGNFDGVHRG-----HQALLARAREIARERGLPSVVMTFEPHPREVFAPD-----KAPARLTP--------LRDKAELL 79 (305)
T ss_pred EEeeCCcCCHH-----HHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCC-----CCCcCCCC--------HHHHHHHH
Confidence 78888888654 5666665543 333344444443222343333111 00011111 34455678
Q ss_pred HHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh------chHHHHHH
Q 017159 163 EQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL------SAGFYQEK 236 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~------~s~~Y~~~ 236 (376)
++.|+|.+++--.| +++.+.. .+.-++.+....++ -+.-|+|.+++. ....+++.
T Consensus 80 ~~~gVD~~~~~~F~-----~~~~~ls-------~e~Fi~~~l~~~l~-------~~~iVvG~Df~FG~~~~G~~~~L~~~ 140 (305)
T PRK05627 80 AELGVDYVLVLPFD-----EEFAKLS-------AEEFIEDLLVKGLN-------AKHVVVGFDFRFGKKRAGDFELLKEA 140 (305)
T ss_pred HHcCCCEEEEecCC-----HHHhcCC-------HHHHHHHHHHhccC-------CCEEEECCCCCCCCCCCCCHHHHHHH
Confidence 99999988764433 2222221 12222221111111 156678887764 23456666
Q ss_pred HHhcCCceeecCccccc-cchH--HHHHHHhcCChHHHHHHH
Q 017159 237 LQNQGFEVVLPDKATME-HVII--PTIEALNHRDMEGARNLL 275 (376)
Q Consensus 237 L~~~G~evv~p~~~~q~-~~l~--~~ie~lk~G~~~~a~~~l 275 (376)
.+++|+++.+.+....+ ..+- .+-+.|..|+++.+..+|
T Consensus 141 ~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~~G~i~~A~~lL 182 (305)
T PRK05627 141 GKEFGFEVTIVPEVKEDGERVSSTAIRQALAEGDLELANKLL 182 (305)
T ss_pred HHHcCcEEEEeccEecCCCcCchHHHHHHHHcCCHHHHHhhh
Confidence 77789988765542111 1111 113457778886665443
No 400
>PRK10444 UMP phosphatase; Provisional
Probab=30.12 E-value=2.6e+02 Score=26.49 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh---hHHHHhc-cCCCC---eeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA---WHGDVSE-GCSIP---FLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDAT 227 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~---~~d~L~~-~~~vP---vl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T 227 (376)
..+.++.|.+.|..++++.-|+... +.+.++. .++++ |++-..++++.+++.+ .++|-++|+.+
T Consensus 22 a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~~--------~~~v~~~g~~~- 92 (248)
T PRK10444 22 AAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQE--------GKKAYVIGEGA- 92 (248)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhCC--------CCEEEEEcCHH-
Confidence 4455677888999988777776533 2455543 12223 5555667777777642 24788999843
Q ss_pred hchHHHHHHHHhcCCcee
Q 017159 228 LSAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 228 ~~s~~Y~~~L~~~G~evv 245 (376)
..+.|++.|+++.
T Consensus 93 -----l~~~l~~~g~~~~ 105 (248)
T PRK10444 93 -----LIHELYKAGFTIT 105 (248)
T ss_pred -----HHHHHHHCcCEec
Confidence 3445667787754
No 401
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=30.07 E-value=1.5e+02 Score=30.44 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=52.6
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.++||||-.-...|--||.+.+.+..+ ...++++..+ -.|+ ... .+|++.+ +.
T Consensus 135 p~~I~viTs~~gAa~~D~~~~~~~r~p-----~~~~~~~~~~--------------vQG~--~A~--~~i~~al----~~ 187 (438)
T PRK00286 135 PKRIGVITSPTGAAIRDILTVLRRRFP-----LVEVIIYPTL--------------VQGE--GAA--ASIVAAI----ER 187 (438)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhcCC-----CCeEEEecCc--------------CcCc--cHH--HHHHHHH----HH
Confidence 689999999999999999998886532 2445444322 1111 111 3444443 44
Q ss_pred HHHcCCcEEEEeCCCchh---h-HH--HHh---ccCCCCeeccH
Q 017159 162 LEQAGARCIVMPCHISHA---W-HG--DVS---EGCSIPFLHVG 196 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~---~-~d--~L~---~~~~vPvl~Iv 196 (376)
+.+.++|+|||+=-.-+. | |+ .|. ..+++|||+-|
T Consensus 188 ~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 188 ANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAV 231 (438)
T ss_pred hcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEec
Confidence 555568999998766543 1 11 111 24689988754
No 402
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=29.96 E-value=1e+02 Score=31.06 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHH
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKEL 203 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~ 203 (376)
...++.+++.|+|.||-+|-+= ...|+...++++.|+++.+++++
T Consensus 350 ~~k~~~i~~~~a~~ivt~Cp~C---~~ql~~~~~~~v~h~~ell~~~l 394 (396)
T PRK11168 350 APLFRQIEESGADLVVTDCETC---KWQIEMSTGLECEHPITLLAEAL 394 (396)
T ss_pred HHHHHHHHhcCCCEEEeCcHhH---HHHHHhcCCCCCCCHHHHHHHHh
Confidence 4556778889999999999653 44555567899999999887654
No 403
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=29.91 E-value=4.9e+02 Score=24.71 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc----------------hhhHHHHhccCCCCeeccHHH----HHHHHHHhcCCCCcCCC
Q 017159 156 RHKRAFLEQAGARCIVMPCHIS----------------HAWHGDVSEGCSIPFLHVGEC----VAKELKEAKLKPLEAGS 215 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTA----------------H~~~d~L~~~~~vPvl~Ivea----t~~~~~~~g~k~~~~~~ 215 (376)
.+.++.+.+.|||.|=|.+-+. .++++.+++.+++|+ + +|. +++++.+.|.
T Consensus 27 ~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~pi-S-IDT~~~~v~~aaL~~g~------- 97 (258)
T cd00423 27 LEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPI-S-VDTFNAEVAEAALKAGA------- 97 (258)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeE-E-EeCCcHHHHHHHHHhCC-------
Confidence 3445667789999999987554 233677777778885 3 444 3444444331
Q ss_pred CceEEEeecchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHh-cCC-hHHHHHHHHHHHHHHhhCCC--CEEE
Q 017159 216 GVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALN-HRD-MEGARNLLRIGIQLLLVRAV--NAVI 291 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk-~G~-~~~a~~~l~~~i~~L~~~ga--DaVI 291 (376)
--|-...+--...-.-+.++++|..+++--......... ..- ..+ .++-.+.+++.++.+.+.|+ +-||
T Consensus 98 ---~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii 170 (258)
T cd00423 98 ---DIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQ----NNPYYADVVDEVVEFLEERVEAATEAGIPPEDII 170 (258)
T ss_pred ---CEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccc----cCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 123443332111234456777888777543211100000 000 011 13345667777777877774 4455
Q ss_pred EC
Q 017159 292 IG 293 (376)
Q Consensus 292 LG 293 (376)
+=
T Consensus 171 lD 172 (258)
T cd00423 171 LD 172 (258)
T ss_pred Ee
Confidence 54
No 404
>PRK07064 hypothetical protein; Provisional
Probab=29.86 E-value=1.4e+02 Score=31.44 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=50.5
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEE-eecchhhchHHHHHH
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGV-LATDATLSAGFYQEK 236 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGl-LaT~~T~~s~~Y~~~ 236 (376)
++.|++.|++.+ .+|+.+.-+++|.+.+.-++.++..-.+......+.|+- .-.+|+|+ +.|.+.=........
T Consensus 10 ~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gya----r~tg~~~v~~~t~GpG~~N~~~~i 85 (544)
T PRK07064 10 AAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHA----RVSGGLGVALTSTGTGAGNAAGAL 85 (544)
T ss_pred HHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHH----HhcCCCeEEEeCCCCcHHHHHHHH
Confidence 467889999987 478877777899997655688888877765555555542 11235665 555443333333333
Q ss_pred HHhc--CCceee
Q 017159 237 LQNQ--GFEVVL 246 (376)
Q Consensus 237 L~~~--G~evv~ 246 (376)
.+++ +..+++
T Consensus 86 ~~A~~~~~Pvl~ 97 (544)
T PRK07064 86 VEALTAGTPLLH 97 (544)
T ss_pred HHHHhcCCCEEE
Confidence 3332 444443
No 405
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=29.83 E-value=5.3e+02 Score=25.13 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCC
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCH 175 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCN 175 (376)
+.+.+.+.++.+.++|||.|.++--
T Consensus 169 it~~~~~~~~~~~eaGad~i~i~d~ 193 (326)
T cd03307 169 LTEACIEYAKAQLEAGADIITIADP 193 (326)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCC
Confidence 4444555566666789999877653
No 406
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.78 E-value=1.4e+02 Score=30.84 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=32.1
Q ss_pred ceEEEeecchhhchHHHHHHHHhcC--CceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 217 VRIGVLATDATLSAGFYQEKLQNQG--FEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 217 ~rVGlLaT~~T~~s~~Y~~~L~~~G--~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
+||||++.+....-+=+.+.+..+. +++.+..... .|+- +...+.++++.+...+.|+||++
T Consensus 136 ~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~v-------------QG~~--A~~~i~~al~~~~~~~~Dviii~ 199 (438)
T PRK00286 136 KRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLV-------------QGEG--AAASIVAAIERANARGEDVLIVA 199 (438)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcC-------------cCcc--HHHHHHHHHHHhcCCCCCEEEEe
Confidence 4999998876544333445555542 3443332222 2331 33334444444444457888885
No 407
>PLN02377 3-ketoacyl-CoA synthase
Probab=29.58 E-value=3.4e+02 Score=28.88 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH-HHHcC-----C
Q 017159 94 SSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF-LEQAG-----A 167 (376)
Q Consensus 94 ~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~-L~~~G-----a 167 (376)
..+++|++||.+.+.=+++-+.|-.+...| |+..+ .. -+++..+.+.++++. |+++| +
T Consensus 131 ~~~~~f~~ri~~~sgig~~t~~p~~~~~~~--~~~~~----~~----------~~~ea~~l~~~A~~~aL~kaGi~p~dI 194 (502)
T PLN02377 131 DSSLEFQRKILERSGLGEDTYVPEAMHYIP--PRPSM----AA----------AREEAEQVMFGALDNLFANTNVNPKDI 194 (502)
T ss_pred HHHHHHHHHHHHhcCCCCccccCchhccCC--ccchH----HH----------HHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 556899999999775455556663333322 11111 00 114555556666665 46665 5
Q ss_pred cEEEEeCCCchhh---HHHHhccCC----CCeeccHH----------HHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 168 RCIVMPCHISHAW---HGDVSEGCS----IPFLHVGE----------CVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 168 d~IVIaCNTAH~~---~d~L~~~~~----vPvl~Ive----------at~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
|.||+.|...++. -..|+++++ ++-+++-- .+++.+.+. .+++++.|++|..
T Consensus 195 D~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~-------~~~~~aLVVstE~ 263 (502)
T PLN02377 195 GILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQV-------HRNTYAVVVSTEN 263 (502)
T ss_pred CEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHHHHHHHHHHc-------CCCCEEEEEEEec
Confidence 7888766654332 344555543 34444431 112333332 2356899899876
No 408
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=29.05 E-value=2.2e+02 Score=27.32 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.+.++...+.|+..|+|..|..++.
T Consensus 203 ~~~~~~~ak~~g~~ii~IT~~~~s~l 228 (292)
T PRK11337 203 VIEAVELAKKNGAKIICITNSYHSPI 228 (292)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 34455667889999999999886654
No 409
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=28.89 E-value=7.3e+02 Score=26.41 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=25.7
Q ss_pred CceEEEeecc--hhhchHHHHHHHHhcCCceeecCcc
Q 017159 216 GVRIGVLATD--ATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 216 ~~rVGlLaT~--~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
.+.+||+|-+ .++.-.++...+++.|++..+-.-+
T Consensus 252 t~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~ 288 (529)
T PLN02520 252 TKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLL 288 (529)
T ss_pred ceEEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEee
Confidence 3568999998 4566667888888889887765433
No 410
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=28.75 E-value=5.6e+02 Score=25.04 Aligned_cols=35 Identities=9% Similarity=0.106 Sum_probs=20.9
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeec
Q 017159 160 AFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLH 194 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~ 194 (376)
+.+.+.|+++|+=|..+.... ...+.+..++|+|+
T Consensus 62 ~l~~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~Is 97 (389)
T cd06352 62 DLYWEHNVDAFIGPGCPYACAPVARLAAHWNIPMIS 97 (389)
T ss_pred HHHhhcCCcEEECCCChhHHHHHHHHHhcCCCCEec
Confidence 334556888877665553332 44455566777775
No 411
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=28.64 E-value=1.2e+02 Score=26.22 Aligned_cols=49 Identities=10% Similarity=-0.040 Sum_probs=33.3
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhc----cCCCCeeccHHHHHHHHHHhc
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSE----GCSIPFLHVGECVAKELKEAK 207 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~----~~~vPvl~Iveat~~~~~~~g 207 (376)
++.|.+.|++.+ .+|+.....+++.+.+ .-++.++..-.+........|
T Consensus 6 ~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g 59 (160)
T cd07034 6 ARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIG 59 (160)
T ss_pred HHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHH
Confidence 456888999855 8899888888999964 346777766555443333333
No 412
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.47 E-value=2e+02 Score=28.79 Aligned_cols=125 Identities=18% Similarity=0.209 Sum_probs=66.2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCee--ccHHHHHHHHHHhcCCCCcCCCCceEEEeecchh--hchHHH
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFL--HVGECVAKELKEAKLKPLEAGSGVRIGVLATDAT--LSAGFY 233 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl--~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T--~~s~~Y 233 (376)
.++.|+.+|+|.++.-= .|. .+++.-+++|+- +.....++++++... ..+-|++-+.. -....|
T Consensus 130 vA~lL~~~g~d~vitvD--lH~--~~~~~fF~ipv~nl~~~~~l~~~i~~~~~--------~~~vvVsPD~gg~~ra~~~ 197 (330)
T PRK02812 130 VANLITKAGADRVLAMD--LHS--AQIQGYFDIPCDHVYGSPVLLDYLASKNL--------EDIVVVSPDVGGVARARAF 197 (330)
T ss_pred HHHHHHhcCCCEEEEEE--CCc--hHHcCccCCCceeeeChHHHHHHHHhcCC--------CCeEEEEECCccHHHHHHH
Confidence 45668888999876432 464 567777778854 445566777755322 14556665442 222334
Q ss_pred HHHHHhcCCceeecCccccc-c--chHHHHHHHhcC------ChHHHHHHHHHHHHHHhhCCCCEEEECCCc
Q 017159 234 QEKLQNQGFEVVLPDKATME-H--VIIPTIEALNHR------DMEGARNLLRIGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 234 ~~~L~~~G~evv~p~~~~q~-~--~l~~~ie~lk~G------~~~~a~~~l~~~i~~L~~~gaDaVILGCTE 296 (376)
.+.+. +..+.+-++.... . ..+.....++.. +.-.+...+..+++.|.+.|+..|++.|||
T Consensus 198 A~~L~--~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH 267 (330)
T PRK02812 198 AKKLN--DAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATH 267 (330)
T ss_pred HHHhC--CCCEEEEEeeccCCceeeeEeccccCCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEc
Confidence 44442 2232222211100 0 000001111111 111134567788888999999999999999
No 413
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=28.40 E-value=1.6e+02 Score=26.00 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=45.3
Q ss_pred cccccCCeEEEEc-CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCC---cch--hHHhhhchhhhccccccCcchHHH
Q 017159 77 SLLNQANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDP---ALN--EELFHASVHSLKSKTVQLDHIRGA 150 (376)
Q Consensus 77 ~~~~~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p---~ip--d~l~~~s~~~~~~~~~~~~~~~~~ 150 (376)
..|.+.++|=|+| |.+.....++..++...-. +....++. .+. |-++.-| ..... .+
T Consensus 28 ~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~-------~~~~~~~~~~~~~~~~D~vI~iS-------~sG~t---~~ 90 (179)
T cd05005 28 SAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGL-------NVYVVGETTTPAIGPGDLLIAIS-------GSGET---SS 90 (179)
T ss_pred HHHHhCCeEEEEecChhHHHHHHHHHHHHhCCC-------eEEEeCCCCCCCCCCCCEEEEEc-------CCCCc---HH
Confidence 4556678999999 7776666667666654321 11111111 111 1111111 01111 34
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+ .+.++.+.+.|+..|+|.++..++.
T Consensus 91 ~----i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 91 V----VNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred H----HHHHHHHHHCCCeEEEEECCCCCch
Confidence 3 4455677889999999999876654
No 414
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=28.30 E-value=5.3e+02 Score=26.18 Aligned_cols=113 Identities=7% Similarity=0.090 Sum_probs=0.0
Q ss_pred EEeCCCchhh----HHHHhccCCCCeecc---HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHH-HHHHHHhcC-
Q 017159 171 VMPCHISHAW----HGDVSEGCSIPFLHV---GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGF-YQEKLQNQG- 241 (376)
Q Consensus 171 VIaCNTAH~~----~d~L~~~~~vPvl~I---veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~-Y~~~L~~~G- 241 (376)
+|+.|..+.. ...|.+.-.+-++|= +|.-+++++..... ...++.+ .-+|....+ .-+.|.+.+
T Consensus 48 ii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~e~~~~~v~~~~~~-----~~~~~~v--svG~~~~d~er~~~L~~a~~ 120 (343)
T TIGR01305 48 IIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEWKAFATNSSPD-----CLQNVAV--SSGSSDNDLEKMTSILEAVP 120 (343)
T ss_pred eEecCCCcccCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHhhccc-----ccceEEE--EeccCHHHHHHHHHHHhcCC
Q ss_pred -CceeecCccccc-cchHHHHHHHh---------cCChHHHHHHHHHHHHHHhhCCCCEEEEC------CC
Q 017159 242 -FEVVLPDKATME-HVIIPTIEALN---------HRDMEGARNLLRIGIQLLLVRAVNAVIIG------SD 295 (376)
Q Consensus 242 -~evv~p~~~~q~-~~l~~~ie~lk---------~G~~~~a~~~l~~~i~~L~~~gaDaVILG------CT 295 (376)
+++++.|.+.-. ..+++.++.++ .|++ .-.+..+.|.+.|||+|..| ||
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV-----~T~e~a~~Li~aGAD~ikVgiGpGSict 186 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNV-----VTGEMVEELILSGADIVKVGIGPGSVCT 186 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecc-----cCHHHHHHHHHcCCCEEEEcccCCCccc
No 415
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=28.26 E-value=3e+02 Score=23.33 Aligned_cols=60 Identities=12% Similarity=-0.038 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT 224 (376)
+....+.+.+.-.+.-|-.|.|+....+.+++. +..+-+ ++.+.+.+...|++ +|.|.-+
T Consensus 19 ~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~-~~~~p~-~~eaL~~l~~~G~~--------~V~V~Pl 78 (127)
T cd03412 19 IDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKR-GIEVDT-PEEALAKLAADGYT--------EVIVQSL 78 (127)
T ss_pred HHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhc-CCCCCC-HHHHHHHHHHCCCC--------EEEEEeC
Confidence 444556676777899999999998888888876 333334 36677778888876 8887766
No 416
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=28.26 E-value=2.8e+02 Score=27.48 Aligned_cols=54 Identities=24% Similarity=0.157 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCcEEEEe---CCCch----------hh--HHHHhccCCCCee-----c--cHHHHHHHHHHhcCC
Q 017159 156 RHKRAFLEQAGARCIVMP---CHISH----------AW--HGDVSEGCSIPFL-----H--VGECVAKELKEAKLK 209 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIa---CNTAH----------~~--~d~L~~~~~vPvl-----~--Iveat~~~~~~~g~k 209 (376)
.+.++.++++|+|+|-+- |+... .+ +.++++.+++||+ + -+...++.+.+.|.+
T Consensus 117 ~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~d 192 (334)
T PRK07565 117 VDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGAD 192 (334)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCC
Confidence 344566788999999883 34311 11 4667777778865 1 134556666666653
No 417
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=28.22 E-value=2.1e+02 Score=28.60 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH---HHHHhcCCceeec
Q 017159 195 VGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ---EKLQNQGFEVVLP 247 (376)
Q Consensus 195 Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~---~~L~~~G~evv~p 247 (376)
.++.+.+.+++.|.+ |+.|++.+.+.+.+.++ +.|++.|+++.+.
T Consensus 11 ~~~~l~~~l~~~g~~--------~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~ 58 (370)
T cd08192 11 AIKELPAECAELGIK--------RPLIVTDPGLAALGLVARVLALLEDAGLAAALF 58 (370)
T ss_pred HHHHHHHHHHHcCCC--------eEEEEcCcchhhCccHHHHHHHHHHcCCeEEEe
Confidence 345555666665543 78887766655554444 4466668877544
No 418
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=28.15 E-value=4.5e+02 Score=23.73 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=41.2
Q ss_pred HHHHHcCCcEEEE-eCCCchhhHHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 160 AFLEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 160 ~~L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rVG 220 (376)
+.+.+.++|.+++ +++.....+.+.. ..++|++-+ ...+++.+.+.|. ++|+
T Consensus 50 ~~l~~~~vdgiii~~~~~~~~~~~~~~-~~~ipvv~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~i~ 120 (264)
T cd01574 50 RRLLAQRVDGVIVNAPLDDADAALAAA-PADVPVVFVDGSPSPRVSTVSVDQEGGARLATEHLLELGH--------RTIA 120 (264)
T ss_pred HHHHhcCCCEEEEeCCCCChHHHHHHH-hcCCCEEEEeccCCCCCCEEEeCcHHHHHHHHHHHHHCCC--------CEEE
Confidence 4466778998875 5654332222222 224554433 2334555555544 4899
Q ss_pred Eeecchh-----hchHHHHHHHHhcCCce
Q 017159 221 VLATDAT-----LSAGFYQEKLQNQGFEV 244 (376)
Q Consensus 221 lLaT~~T-----~~s~~Y~~~L~~~G~ev 244 (376)
+++.+.. .+..-|.+.++++|+++
T Consensus 121 ~i~~~~~~~~~~~r~~gf~~~l~~~~~~~ 149 (264)
T cd01574 121 HVAGPEEWLSARARLAGWRAALEAAGIAP 149 (264)
T ss_pred EEecCCccchHHHHHHHHHHHHHHCCCCc
Confidence 9965432 22234777888777754
No 419
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=27.97 E-value=2.3e+02 Score=27.23 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=24.5
Q ss_pred ceEEEeecchhhchHHHHHHHHhcCCceeecCcc
Q 017159 217 VRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 217 ~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
++|||+|. ++|-.++-.. +...|.++.+.+..
T Consensus 5 ~~V~vIG~-G~mG~~iA~~-l~~~G~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQL-AAAAGMDVWLLDSD 36 (295)
T ss_pred CEEEEECC-CHHHHHHHHH-HHhcCCeEEEEeCC
Confidence 58999998 7888876554 55679999887653
No 420
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=27.78 E-value=3.7e+02 Score=26.92 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHH-cCCcEEEEeCCCchhh-HHHHh------------------ccC-CCCeeccH-------HHHHHH
Q 017159 151 VSQNLRHKRAFLEQ-AGARCIVMPCHISHAW-HGDVS------------------EGC-SIPFLHVG-------ECVAKE 202 (376)
Q Consensus 151 i~~~l~~~~~~L~~-~Gad~IVIaCNTAH~~-~d~L~------------------~~~-~vPvl~Iv-------eat~~~ 202 (376)
++......++.|++ .|+++++++--|--+. .|++. ... .+|++=+- +..++.
T Consensus 30 Ll~~a~~ia~~l~~~~~~~v~IlaD~~YGaCcvdd~~a~~~~aD~iVHyGHscl~~~~~~~pv~yVf~~~~~d~~~~~~~ 109 (332)
T TIGR00322 30 LKIRALEIAEIIEQFCGVETVISGDTSFGACDIDDFTARALDVDLIVHYAHTPLVPDDVEIKVLYVPVTINIEYDHIIKT 109 (332)
T ss_pred HHHHHHHHHHHHHhccCceEEEEcCCceecCCCCHHHHhhcCCCEEEEcCCCCCCcccCCCCEEEEEccCCCCHHHHHHH
Confidence 44444455555655 5788777754443222 22221 112 34654332 344555
Q ss_pred HHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcCCceeec
Q 017159 203 LKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQGFEVVLP 247 (376)
Q Consensus 203 ~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G~evv~p 247 (376)
+++. + +..++|+|++|-. .-..+-..+.|++.|.++++.
T Consensus 110 ~~~~-~-----~~~~~i~l~~tiq~~~~~~~~~~~L~~~g~~v~i~ 149 (332)
T TIGR00322 110 LQDN-F-----PKGRRIATIGTAQFNHKLHSVRDKLLNEGHEVYIG 149 (332)
T ss_pred HHHH-c-----CCCCeEEEEECHHHHHHHHHHHHHHHhcCceEEEe
Confidence 5443 2 1235899998843 222333566778888887654
No 421
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.68 E-value=3.8e+02 Score=25.46 Aligned_cols=118 Identities=10% Similarity=-0.019 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCcEEEEe-CCCch-------hhHHHHhccCCCCee---ccH-HHHHHHHHHhcCCCCcCCCCceEEEeec
Q 017159 157 HKRAFLEQAGARCIVMP-CHISH-------AWHGDVSEGCSIPFL---HVG-ECVAKELKEAKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIa-CNTAH-------~~~d~L~~~~~vPvl---~Iv-eat~~~~~~~g~k~~~~~~~~rVGlLaT 224 (376)
+.++.+++.|+|-+.+. .+-+- .+++++.+.+ +|+- +|= .+.++.+...|.. || +++|
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~--------rv-vigT 103 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYR--------RQ-IVSS 103 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCC--------EE-EECc
Confidence 34566778999977554 44232 2366776665 5631 111 1334455556654 77 6899
Q ss_pred chhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.+--...+.++. +++|-.+ +.+-+..+..+. + .|-.+.+.-...+.++.+.+.|+..+|+
T Consensus 104 ~a~~~p~~l~~~-~~~~~~i-vvslD~k~g~v~--~----~gw~~~~~~~~~e~~~~~~~~g~~~ii~ 163 (241)
T PRK14114 104 KVLEDPSFLKFL-KEIDVEP-VFSLDTRGGKVA--F----KGWLAEEEIDPVSLLKRLKEYGLEEIVH 163 (241)
T ss_pred hhhCCHHHHHHH-HHhCCCE-EEEEEccCCEEe--e----CCCeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 765455566665 6666443 333332221111 1 1211222223466667777889988886
No 422
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=27.67 E-value=1.5e+02 Score=26.69 Aligned_cols=31 Identities=26% Similarity=0.587 Sum_probs=23.0
Q ss_pred eEEEeecchhhchHHHHHHHHhcCCceeecCcc
Q 017159 218 RIGVLATDATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 218 rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
+|||+|. |+|-.++ ...+..+|++|.+-+..
T Consensus 1 ~V~ViGa-G~mG~~i-A~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGI-AALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES--SHHHHHH-HHHHHHTTSEEEEE-SS
T ss_pred CEEEEcC-CHHHHHH-HHHHHhCCCcEEEEECC
Confidence 5899999 8888875 55566779999988764
No 423
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=27.67 E-value=5.2e+02 Score=24.26 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEE-EEeCCCc------hhhHHHHhccCCCCe-----eccHHHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 156 RHKRAFLEQAGARCI-VMPCHIS------HAWHGDVSEGCSIPF-----LHVGECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 156 ~~~~~~L~~~Gad~I-VIaCNTA------H~~~d~L~~~~~vPv-----l~Iveat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
.+.++.+.+.|+|.+ ++=.+.+ ...+.++.+.+.+|+ +.-.|.+.+.+. .|.. |++ +|
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~-~Ga~--------kvv-iG 104 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALA-TGCA--------RVN-IG 104 (241)
T ss_pred HHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHH-CCCC--------EEE-EC
Q ss_pred cchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 224 TDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
|..--...+..+..+.++-.+++.-.--.. .++...+.+....+.+.++.+.+.|++.+++
T Consensus 105 s~~l~~p~l~~~i~~~~~~~i~vsld~~~~--------~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv 165 (241)
T PRK14024 105 TAALENPEWCARVIAEHGDRVAVGLDVRGH--------TLAARGWTRDGGDLWEVLERLDSAGCSRYVV 165 (241)
T ss_pred chHhCCHHHHHHHHHHhhhhEEEEEEEecc--------EeccCCeeecCccHHHHHHHHHhcCCCEEEE
No 424
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=27.63 E-value=70 Score=27.45 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=32.4
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHH
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKE 205 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~ 205 (376)
++.|++.|++.+ .+|+.....+++.+. ..++.++....+.......
T Consensus 4 ~~~L~~~Gv~~vfg~pg~~~~~l~~~~~-~~~~~~i~~~~E~~A~~~A 50 (155)
T cd07035 4 VEALKAEGVDHVFGVPGGAILPLLDALA-RSGIRYILVRHEQGAVGMA 50 (155)
T ss_pred HHHHHHcCCCEEEECCCCchHHHHHHhc-cCCCEEEEeCCHHHHHHHH
Confidence 467889999966 788877777788887 4567777776664433333
No 425
>TIGR03586 PseI pseudaminic acid synthase.
Probab=27.44 E-value=6.4e+02 Score=25.25 Aligned_cols=75 Identities=7% Similarity=0.125 Sum_probs=46.0
Q ss_pred EEEeecchhhchHHHHHHHHhcCCcee-ecCccccccchHHHHHHHhc-CCh----H--HHHHHHHHHHHHHhhCCC-CE
Q 017159 219 IGVLATDATLSAGFYQEKLQNQGFEVV-LPDKATMEHVIIPTIEALNH-RDM----E--GARNLLRIGIQLLLVRAV-NA 289 (376)
Q Consensus 219 VGlLaT~~T~~s~~Y~~~L~~~G~evv-~p~~~~q~~~l~~~ie~lk~-G~~----~--~a~~~l~~~i~~L~~~ga-Da 289 (376)
+-+++|++-.++ -+.+.+.|++.+ +++.+.+. .++++.+.+ |.. . .+.+.+..+++.+.+.|. +.
T Consensus 91 i~~~stpfd~~s---vd~l~~~~v~~~KI~S~~~~n---~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i 164 (327)
T TIGR03586 91 LTIFSSPFDETA---VDFLESLDVPAYKIASFEITD---LPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCKDL 164 (327)
T ss_pred CcEEEccCCHHH---HHHHHHcCCCEEEECCccccC---HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcE
Confidence 558899886664 366777888777 44444443 345555432 221 0 135667778888877887 66
Q ss_pred EEECCC-cccc
Q 017159 290 VIIGSD-EMQG 299 (376)
Q Consensus 290 VILGCT-Elpl 299 (376)
++|=|| .||.
T Consensus 165 ~LlhC~s~YP~ 175 (327)
T TIGR03586 165 VLLKCTSSYPA 175 (327)
T ss_pred EEEecCCCCCC
Confidence 777774 5563
No 426
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=27.43 E-value=3.5e+02 Score=25.45 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCcEEEEeC--C--Cc--h--hhHHHHhccCCCCeecc
Q 017159 156 RHKRAFLEQAGARCIVMPC--H--IS--H--AWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaC--N--TA--H--~~~d~L~~~~~vPvl~I 195 (376)
.+.++.+++.|++.+++-. + |. + ..++++.+.+++|++--
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~ 203 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIAS 203 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEE
Confidence 3445668889999886632 1 11 1 23677777788888754
No 427
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.42 E-value=5e+02 Score=23.99 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=73.4
Q ss_pred HHHHHcCCcEEEEeCCCc---hhhHHHHhccCCCCeecc----------------------HHHHHHHHHHh--cCCCCc
Q 017159 160 AFLEQAGARCIVMPCHIS---HAWHGDVSEGCSIPFLHV----------------------GECVAKELKEA--KLKPLE 212 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTA---H~~~d~L~~~~~vPvl~I----------------------veat~~~~~~~--g~k~~~ 212 (376)
+.+.+.++|.|+|.+... +..++.+.+. ++|++-+ ....++++.+. |.
T Consensus 49 ~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~-~iPvV~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~---- 123 (272)
T cd06313 49 ENMASQGWDFIAVDPLGIGTLTEAVQKAIAR-GIPVIDMGTLIAPLQINVHSFLAPDNYFMGASVAQALCNAMGGK---- 123 (272)
T ss_pred HHHHHcCCCEEEEcCCChHHhHHHHHHHHHC-CCcEEEeCCCCCCCCCceEEEECCCcHHHHHHHHHHHHHHcCCC----
Confidence 446678899998855422 2234444332 3343221 22345555554 33
Q ss_pred CCCCceEEEeecch-----hhchHHHHHHHHhcC-Cceee--cCccccccchHHHHHHH-hcC-ChH----HHHHHHHHH
Q 017159 213 AGSGVRIGVLATDA-----TLSAGFYQEKLQNQG-FEVVL--PDKATMEHVIIPTIEAL-NHR-DME----GARNLLRIG 278 (376)
Q Consensus 213 ~~~~~rVGlLaT~~-----T~~s~~Y~~~L~~~G-~evv~--p~~~~q~~~l~~~ie~l-k~G-~~~----~a~~~l~~~ 278 (376)
++|++++.+. ..+..-|.+.+++++ ++++. +.....+. ....++.+ ..+ +++ ........+
T Consensus 124 ----~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~a~g~ 198 (272)
T cd06313 124 ----GKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEVVDEQPANWDVSK-AARIWETWLTKYPQLDGAFCHNDSMALAA 198 (272)
T ss_pred ----ceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEEEeccCCCCCHHH-HHHHHHHHHHhCCCCCEEEECCCcHHHHH
Confidence 4899996432 123344888888875 55432 11111111 11122222 211 111 011222233
Q ss_pred HHHHhhCCC-CEEEECCCccccccCCCCC-CCCeee-ehHHHHHHHHHHHHHh
Q 017159 279 IQLLLVRAV-NAVIIGSDEMQGVLPKDDP-LLKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 279 i~~L~~~ga-DaVILGCTElpll~~~~~~-~~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
++.+.+.|. |..|.|--..|...+...+ .....| .+.....+.+++....
T Consensus 199 ~~al~~~g~~di~vvgfd~~~~~~~~~~~g~~~ttv~~~~~~~g~~a~~~~~~ 251 (272)
T cd06313 199 YQIMKAAGRTKIVIGGVDGDPPAIQAVSDGRMVATVRNPACRIHGGAIAAGVR 251 (272)
T ss_pred HHHHHHcCCCceEEEeecCCHHHHHHHHcCceEEEEecCHHHHHHHHHHHHHH
Confidence 444444443 7777777777754322211 111223 3666676666665543
No 428
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.35 E-value=3.2e+02 Score=27.69 Aligned_cols=98 Identities=11% Similarity=-0.057 Sum_probs=48.2
Q ss_pred CCceEEEeecchhhchHHHHHHHHhcCCceeecCccccc-cchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 215 SGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATME-HVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~-~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
.++||+|.+- .... --+.+.|.+.|++++........ .......+.+..+..-.....+.+..+.+.+.++|.+|=|
T Consensus 275 ~Gkrv~i~g~-~~~~-~~la~~L~elGm~vv~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~i~~~~pDlli~~ 352 (396)
T cd01979 275 RGKSIFFMGD-NLLE-IPLARFLTRCGMIVVEVGTPYLDKRFQAAELELLPPMVRIVEKPDNYRQLDRIRELRPDLVVTG 352 (396)
T ss_pred cCCEEEEECC-chHH-HHHHHHHHHCCCEEEeeCCCcCChHHHHHHHHhcCCCCeEEECCCHHHHHHHHHhcCCCEEEec
Confidence 3568887654 3333 33678888899999876432211 1111112222211100001123333444556789977765
Q ss_pred CCccccccCCCCCCCCeeeehHHHH
Q 017159 294 SDEMQGVLPKDDPLLKKCIDPMDAL 318 (376)
Q Consensus 294 CTElpll~~~~~~~~vpvIDp~~~l 318 (376)
.- +.......++|+.|.....
T Consensus 353 -~~---~a~pl~r~G~P~~dr~~~~ 373 (396)
T cd01979 353 -LG---LANPLEARGITTKWSIEFT 373 (396)
T ss_pred -cc---ccCcHHhCCCcceeeccee
Confidence 22 1112234467888876543
No 429
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=27.30 E-value=1.6e+02 Score=26.83 Aligned_cols=81 Identities=15% Similarity=0.237 Sum_probs=47.0
Q ss_pred ceEEEeecch----hhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCC------hHHHHHHHHHHHHHHhhCC
Q 017159 217 VRIGVLATDA----TLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRD------MEGARNLLRIGIQLLLVRA 286 (376)
Q Consensus 217 ~rVGlLaT~~----T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~------~~~a~~~l~~~i~~L~~~g 286 (376)
+|| |++|.. ++-.......|+..|++++.-....+.+.++..+.+.+... .......+++.++.+.+.+
T Consensus 83 ~~v-l~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 83 GKV-VIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred CeE-EEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCC
Confidence 355 566644 34455677889999999987655443322544333322111 1123456788888887776
Q ss_pred C--CE-EEECCCccc
Q 017159 287 V--NA-VIIGSDEMQ 298 (376)
Q Consensus 287 a--Da-VILGCTElp 298 (376)
. +. |++|...+.
T Consensus 162 ~~~~~~i~vGG~~~~ 176 (201)
T cd02070 162 LRDKVKVMVGGAPVN 176 (201)
T ss_pred CCcCCeEEEECCcCC
Confidence 5 54 677776554
No 430
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=27.27 E-value=3.2e+02 Score=27.05 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHIS 177 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTA 177 (376)
+.+.++.|++.|+|.|++ +||.
T Consensus 179 ~~~~a~~l~~~G~dgI~~-~n~~ 200 (334)
T PRK07565 179 LANMAKRLDAAGADGLVL-FNRF 200 (334)
T ss_pred HHHHHHHHHHcCCCeEEE-ECCc
Confidence 445567789999999876 4663
No 431
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=27.21 E-value=1.5e+02 Score=31.50 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=42.7
Q ss_pred HHHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEE-eecchh
Q 017159 158 KRAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGV-LATDAT 227 (376)
Q Consensus 158 ~~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGl-LaT~~T 227 (376)
.++.|++.|++.+ .+|..+.-+++|.|.+.-++.++..-.+......+.|+- .-.+++|+ +.|.+.
T Consensus 19 l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgya----r~tg~~gv~~~t~Gp 86 (564)
T PRK08155 19 IVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMA----RTTGKPAVCMACSGP 86 (564)
T ss_pred HHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHH----HHcCCCeEEEECCCC
Confidence 3467889999977 566666667799996644688888777765555444442 11236664 556443
No 432
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=27.15 E-value=5.6e+02 Score=24.51 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhCCCCEEEECCCc
Q 017159 274 LLRIGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 274 ~l~~~i~~L~~~gaDaVILGCTE 296 (376)
-+...+.++.+.++|+|++....
T Consensus 174 d~~~~i~~l~~~~pd~v~~~~~~ 196 (333)
T cd06359 174 DFSAELAQIRAAKPDAVFVFLPG 196 (333)
T ss_pred chHHHHHHHHhCCCCEEEEEccC
Confidence 35556677778899999885433
No 433
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=27.14 E-value=4.9e+02 Score=23.81 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
..+.++...++|+.++-+ ++ -..++++++.+++||+.|.
T Consensus 25 ~~~~a~a~~~~G~~~~~~--~~-~~~i~~i~~~~~~Pil~~~ 63 (221)
T PRK01130 25 MAAMALAAVQGGAVGIRA--NG-VEDIKAIRAVVDVPIIGII 63 (221)
T ss_pred HHHHHHHHHHCCCeEEEc--CC-HHHHHHHHHhCCCCEEEEE
Confidence 455566788899987776 33 2347888888899998653
No 434
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=27.06 E-value=41 Score=34.48 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.0
Q ss_pred CCeEEEEc-CCChHHHHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGKL 103 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~kI 103 (376)
|+.+.||| |+++++++.++.+.
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~ 23 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKL 23 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhh
Confidence 67899999 99999999888764
No 435
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=26.93 E-value=1.6e+02 Score=30.11 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC---------chhh-HHHHhccCCCCeec--cH-HHHHHHHHHhcC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI---------SHAW-HGDVSEGCSIPFLH--VG-ECVAKELKEAKL 208 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT---------AH~~-~d~L~~~~~vPvl~--Iv-eat~~~~~~~g~ 208 (376)
..+.++.++++|+|+|++-+-| +++. +.++.+..++||+. +. ...+.++.+.|.
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGa 210 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGA 210 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCC
Confidence 3455667889999999987433 2222 44666678999985 22 233444555664
No 436
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.91 E-value=1.7e+02 Score=28.61 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
..+.++.|++.|+|+|.+...+
T Consensus 230 ~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 230 AIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred HHHHHHHHHHcCCCEEEeCCCC
Confidence 3455677888999999877655
No 437
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=26.88 E-value=3.6e+02 Score=22.24 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=21.7
Q ss_pred HcCCcEEEEeCCCchhhHHHHhc---cCCCCeecc
Q 017159 164 QAGARCIVMPCHISHAWHGDVSE---GCSIPFLHV 195 (376)
Q Consensus 164 ~~Gad~IVIaCNTAH~~~d~L~~---~~~vPvl~I 195 (376)
..++|+|+++-...|. ++++++ ..++|+..|
T Consensus 48 ~~~~DvIll~PQi~~~-~~~i~~~~~~~~ipv~~I 81 (104)
T PRK09590 48 AAEYDLYLVSPQTKMY-FKQFEEAGAKVGKPVVQI 81 (104)
T ss_pred cCCCCEEEEChHHHHH-HHHHHHHhhhcCCCEEEe
Confidence 3578999988887654 555555 457888775
No 438
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=26.86 E-value=2.1e+02 Score=28.40 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=33.3
Q ss_pred CCceEEEeecchhh--------chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCC
Q 017159 215 SGVRIGVLATDATL--------SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRA 286 (376)
Q Consensus 215 ~~~rVGlLaT~~T~--------~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~g 286 (376)
...||+|+.|-.-+ .....+..+++.|.++..... + .+ ..+.+.+.++.+.++|
T Consensus 158 r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~i------v---------~D---d~~~I~~ai~~~~~~g 219 (312)
T cd03522 158 RPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVI------V---------PH---DEAAIAAAIAEALEAG 219 (312)
T ss_pred CCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEE------c---------CC---CHHHHHHHHHHHhcCC
Confidence 34589999984311 122455667777776643211 0 01 1233445555555567
Q ss_pred CCEEEECC
Q 017159 287 VNAVIIGS 294 (376)
Q Consensus 287 aDaVILGC 294 (376)
+|.||...
T Consensus 220 ~DlIItTG 227 (312)
T cd03522 220 AELLILTG 227 (312)
T ss_pred CCEEEEeC
Confidence 88877654
No 439
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=26.85 E-value=3.8e+02 Score=26.37 Aligned_cols=153 Identities=14% Similarity=0.057 Sum_probs=78.3
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCe--eccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHH
Q 017159 159 RAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPF--LHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQE 235 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPv--l~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~ 235 (376)
++.|+ .|+|.++.-= .|.- ..+++..+++|+ ++.....++.+++. .+ ..-|++... -...+-+.
T Consensus 111 A~ll~-~~~d~vit~D--lH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~-~~--------~~vVVsPd~-g~~~~a~~ 177 (301)
T PRK07199 111 ARLLS-GSFDRLVTVD--PHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAH-VP--------RPLLIGPDE-ESEQWVAA 177 (301)
T ss_pred HHHHH-hhcCeEEEEe--ccchhhHHhcCcccCCccccchHHHHHHHHHhc-CC--------CcEEEEeCC-ChHHHHHH
Confidence 44455 5899775443 3431 467778888998 55566667777543 21 233444322 22222222
Q ss_pred HHHhcCCceeecCccc----cccchHHHHHHHhcCCh----H---HHHHHHHHHHHHHhhCCCCEEEECCCccccccC--
Q 017159 236 KLQNQGFEVVLPDKAT----MEHVIIPTIEALNHRDM----E---GARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLP-- 302 (376)
Q Consensus 236 ~L~~~G~evv~p~~~~----q~~~l~~~ie~lk~G~~----~---~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~-- 302 (376)
.....|..+.+-.... +..........++ |.. + .+...+.++.+.|++.||.-|.+.|||-=+--+
T Consensus 178 la~~l~~~~~~~~K~R~~~~~~~~~~~~~~~v~-Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~ 256 (301)
T PRK07199 178 VAERAGAPHAVLRKTRHGDRDVEISLPDAAPWA-GRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDAY 256 (301)
T ss_pred HHHHhCCCEEEEEEEecCCCeEEEEeccCcccC-CCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHHH
Confidence 2233365554332211 1111000001112 211 1 135567888899999999999999999432211
Q ss_pred -----C-C------C--CCCCeeeehHHHHHHHHHHH
Q 017159 303 -----K-D------D--PLLKKCIDPMDALARSTVTW 325 (376)
Q Consensus 303 -----~-~------~--~~~vpvIDp~~~lA~a~v~~ 325 (376)
. . + +....++|-...+|+++.+.
T Consensus 257 ~~l~~~~i~~iv~Tdti~~~~~~~sva~lla~~i~~~ 293 (301)
T PRK07199 257 SALAAAGIARVVSTDTVPHPSNAISLAPLLAEALRRE 293 (301)
T ss_pred HHHHhCCCCEEEEeCCccCCCCEEehHHHHHHHHHHH
Confidence 0 1 1 11234688888888876443
No 440
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=26.85 E-value=2.7e+02 Score=26.62 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred EEEEc--CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 85 IGIIG--GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 85 IGIIG--GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
|-+.| |=++.=|.+=.+++++.+.+.-.+..|++. +-...+. ++ ..+.++..
T Consensus 38 l~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~--------------------gv~~~~~--~~----~~~~a~~a 91 (284)
T cd00950 38 LVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIA--------------------GTGSNNT--AE----AIELTKRA 91 (284)
T ss_pred EEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEe--------------------ccCCccH--HH----HHHHHHHH
Q ss_pred HHcCCcEEEEeCCCchh--------hHHHHhccCCCCee
Q 017159 163 EQAGARCIVMPCHISHA--------WHGDVSEGCSIPFL 193 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~--------~~d~L~~~~~vPvl 193 (376)
++.|+|.+++.--..+. +++++.+.+++|++
T Consensus 92 ~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~ 130 (284)
T cd00950 92 EKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVI 130 (284)
T ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEE
No 441
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.79 E-value=4.1e+02 Score=22.86 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecchhhc--hHHHHHHHHhcCCceeecCcc
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDATLS--AGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~--s~~Y~~~L~~~G~evv~p~~~ 250 (376)
..+.+.+++.+.. ..+|.+=|+..+-. .....+.+++.|++.+.+...
T Consensus 72 ~~~~~~L~~~~~~------~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 72 RGLREKCIEAGLG------DILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT 121 (137)
T ss_pred HHHHHHHHhcCCC------CCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC
Confidence 4455666666542 23677777654422 233457888999988877544
No 442
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.69 E-value=2.8e+02 Score=27.27 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred EEEEc--CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 85 IGIIG--GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 85 IGIIG--GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
|.|.| |-++.=|.+=.+++++.+.+.-.+..|+++ +-...+. ++ ..+.++..
T Consensus 46 i~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~--------------------Gv~~~~t--~~----ai~~a~~A 99 (309)
T cd00952 46 ILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFV--------------------GATTLNT--RD----TIARTRAL 99 (309)
T ss_pred EEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEE--------------------EeccCCH--HH----HHHHHHHH
Q ss_pred HHcCCcEEEEeCCCchh--------hHHHHhccC-CCCee
Q 017159 163 EQAGARCIVMPCHISHA--------WHGDVSEGC-SIPFL 193 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~--------~~d~L~~~~-~vPvl 193 (376)
++.|||++++.---... +|+++.+.+ ++||+
T Consensus 100 ~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~ 139 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIA 139 (309)
T ss_pred HHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEE
No 443
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=26.68 E-value=3.7e+02 Score=25.90 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=48.0
Q ss_pred cccccccCCeEEEEc-CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchh-HHhhhchhhhccccccCcchHHHHH
Q 017159 75 PDSLLNQANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNE-ELFHASVHSLKSKTVQLDHIRGAVS 152 (376)
Q Consensus 75 ~~~~~~~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd-~l~~~s~~~~~~~~~~~~~~~~~i~ 152 (376)
....|.+.+.|-++| |.+...+.++..++.+.- .+.+.++++...- .+....-.+.- --....+...+++
T Consensus 123 av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig-------~~~~~~~d~~~~~~~~~~~~~~Dv~-i~iS~sG~t~e~i 194 (281)
T COG1737 123 AVELLAKARRIYFFGLGSSGLVASDLAYKLMRIG-------LNVVALSDTHGQLMQLALLTPGDVV-IAISFSGYTREIV 194 (281)
T ss_pred HHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcC-------CceeEecchHHHHHHHHhCCCCCEE-EEEeCCCCcHHHH
Confidence 345566788888888 666666667777776643 2233333332211 00000000000 0000111114544
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 153 QNLRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 153 ~~l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.++...+.|+..|.|..+..++.
T Consensus 195 ----~~a~~ak~~ga~vIaiT~~~~spl 218 (281)
T COG1737 195 ----EAAELAKERGAKVIAITDSADSPL 218 (281)
T ss_pred ----HHHHHHHHCCCcEEEEcCCCCCch
Confidence 444667889999999999876653
No 444
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=26.66 E-value=1e+02 Score=27.01 Aligned_cols=22 Identities=18% Similarity=-0.044 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
..+.++...+.|||++.+.++.
T Consensus 67 ~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 67 KVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHHHHHHcCCCEEEEeccH
Confidence 3445566788999999998875
No 445
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=26.58 E-value=4.6e+02 Score=23.92 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=49.0
Q ss_pred eEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecCCcch--hHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 84 TIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCNDPALN--EELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 84 ~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~p~ip--d~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
+|+|+- |-|.. ++.+.+....++. ..+-+|+.++++.. ++....+.|.........+. +++.- .+..
T Consensus 2 riail~sg~gs~-----~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~-~~~~~---~~~~ 72 (190)
T TIGR00639 2 RIVVLISGNGSN-----LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPS-REAFD---QAII 72 (190)
T ss_pred eEEEEEcCCChh-----HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCc-hhhhh---HHHH
Confidence 577776 66766 3445554443322 23445556666543 22222233332100000110 01111 1234
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+.|++.++|++|++... +..-+++-+.....++|+
T Consensus 73 ~~l~~~~~D~iv~~~~~-~il~~~~l~~~~~~~iNi 107 (190)
T TIGR00639 73 EELRAHEVDLVVLAGFM-RILGPTFLSRFAGRILNI 107 (190)
T ss_pred HHHHhcCCCEEEEeCcc-hhCCHHHHhhccCCEEEE
Confidence 56778999999888764 444444544444556665
No 446
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=26.41 E-value=1.3e+02 Score=23.85 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=23.2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh--------HHHHhccCCCCee
Q 017159 158 KRAFLEQAGARCIVMPCHISHAW--------HGDVSEGCSIPFL 193 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~--------~d~L~~~~~vPvl 193 (376)
.++..++.++|+|||.+...+.+ .+.+-..+++||+
T Consensus 94 i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVl 137 (140)
T PF00582_consen 94 IIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVL 137 (140)
T ss_dssp HHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEE
T ss_pred hhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEE
Confidence 34556678999999999884332 3444445555554
No 447
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=26.38 E-value=3.7e+02 Score=29.00 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeeccHHHH-----HHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHVGECV-----AKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iveat-----~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
+.+.++..+..|+++ +|++...... ---+...+.+|||++--.+ ...+... .. -+++--|+.++-.+..
T Consensus 454 ~~~~~~~~~~~~~~v-~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~-~~---~p~g~pv~~v~i~~~~ 528 (577)
T PLN02948 454 MFSYARSAHSRGLQV-IIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSI-VQ---MPRGVPVATVAIGNAT 528 (577)
T ss_pred HHHHHHHHHHCCCCE-EEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHH-hc---CCCCCeEEEEecCChH
Confidence 444455677788884 4444443333 4456667788988864321 2221111 00 0222247777776665
Q ss_pred chHHHHHH
Q 017159 229 SAGFYQEK 236 (376)
Q Consensus 229 ~s~~Y~~~ 236 (376)
...++.-.
T Consensus 529 ~aa~~a~~ 536 (577)
T PLN02948 529 NAGLLAVR 536 (577)
T ss_pred HHHHHHHH
Confidence 66555433
No 448
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=26.37 E-value=2.3e+02 Score=29.69 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred CcccccccCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHH
Q 017159 74 SPDSLLNQANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQ 153 (376)
Q Consensus 74 ~~~~~~~~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~ 153 (376)
.|=+++ .++||||-+-...|=-|....+.+..+ ..+++++.-. . .|+ ... ++|++
T Consensus 129 kpLP~~--p~~IGVITS~tgAairDIl~~~~rR~P-----~~~viv~pt~------V--------QG~--~A~--~eIv~ 183 (440)
T COG1570 129 KPLPFF--PKKIGVITSPTGAALRDILHTLSRRFP-----SVEVIVYPTL------V--------QGE--GAA--EEIVE 183 (440)
T ss_pred CCCCCC--CCeEEEEcCCchHHHHHHHHHHHhhCC-----CCeEEEEecc------c--------cCC--CcH--HHHHH
Confidence 444455 689999987777766666666554333 2777776532 0 011 111 45444
Q ss_pred HHHHHHHHHHHcC-CcEEEEeCCCchh---h-H-H-HHh---ccCCCCeeccH
Q 017159 154 NLRHKRAFLEQAG-ARCIVMPCHISHA---W-H-G-DVS---EGCSIPFLHVG 196 (376)
Q Consensus 154 ~l~~~~~~L~~~G-ad~IVIaCNTAH~---~-~-d-~L~---~~~~vPvl~Iv 196 (376)
+++.+.+.+ +|+|+++=-.-+. | | | .+. ..+.+|||+-|
T Consensus 184 ----aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAV 232 (440)
T COG1570 184 ----AIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAV 232 (440)
T ss_pred ----HHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEeec
Confidence 445566666 9999999777653 2 1 1 111 23577887754
No 449
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=26.36 E-value=4.2e+02 Score=25.52 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=16.6
Q ss_pred CceEEEeecchhhchHHHHHH-------HHhcCCceee
Q 017159 216 GVRIGVLATDATLSAGFYQEK-------LQNQGFEVVL 246 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~~~-------L~~~G~evv~ 246 (376)
.+.||++-.. +...+|... ++++|+.+++
T Consensus 59 ~~~Igvi~~~--~~~~f~~~~~~gi~~~~~~~g~~~~~ 94 (343)
T PRK10727 59 TETVGLVVGD--VSDPFFGAMVKAVEQVAYHTGNFLLI 94 (343)
T ss_pred CCeEEEEeCC--CCcchHHHHHHHHHHHHHHcCCEEEE
Confidence 4579987653 344555543 4455666554
No 450
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.22 E-value=4.5e+02 Score=25.26 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEE--EEeC----------------------CCchhh--HHHHh-ccCCCCeecc---------
Q 017159 152 SQNLRHKRAFLEQAGARCI--VMPC----------------------HISHAW--HGDVS-EGCSIPFLHV--------- 195 (376)
Q Consensus 152 ~~~l~~~~~~L~~~Gad~I--VIaC----------------------NTAH~~--~d~L~-~~~~vPvl~I--------- 195 (376)
.+...+.++.|.+.|||+| -+|- ++.+.+ +.+++ +..++|++=|
T Consensus 25 ~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~ 104 (258)
T PRK13111 25 LETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQY 104 (258)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhc
Q ss_pred -HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHH-HHHHHHhcCCceee
Q 017159 196 -GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGF-YQEKLQNQGFEVVL 246 (376)
Q Consensus 196 -veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~-Y~~~L~~~G~evv~ 246 (376)
++...+.+++.|.+ |++--+-..+..- |.+.+.++|++.+.
T Consensus 105 G~e~f~~~~~~aGvd----------GviipDLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 105 GVERFAADAAEAGVD----------GLIIPDLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CHHHHHHHHHHcCCc----------EEEECCCCHHHHHHHHHHHHHcCCcEEE
No 451
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=26.15 E-value=2e+02 Score=28.31 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=48.5
Q ss_pred CCeEEEE-cC-CChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 82 ANTIGII-GG-VSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 82 ~k~IGII-GG-mGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
.|+.|.. .| -.-....++.+||....... ...++++.-..+. .+. .... ++.+++ +
T Consensus 115 pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~--~~~d~~I~ARTDa---~~~-----------~~g~--deAI~R----a 172 (290)
T TIGR02321 115 PKDTSLRTDGRQELVRIEEFQGKIAAATAAR--ADRDFVVIARVEA---LIA-----------GLGQ--QEAVRR----G 172 (290)
T ss_pred CcccccccCCCccccCHHHHHHHHHHHHHhC--CCCCEEEEEEecc---ccc-----------cCCH--HHHHHH----H
Confidence 3555555 23 22345667788887665432 2356766543321 100 0011 333333 4
Q ss_pred HHHHHcCCcEEEEeC-CCchhhHHHHhccCC--CCee
Q 017159 160 AFLEQAGARCIVMPC-HISHAWHGDVSEGCS--IPFL 193 (376)
Q Consensus 160 ~~L~~~Gad~IVIaC-NTAH~~~d~L~~~~~--vPvl 193 (376)
+...++|||+|.+++ .+.-.-+.++.+.++ +|++
T Consensus 173 ~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~p~pv~ 209 (290)
T TIGR02321 173 QAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLV 209 (290)
T ss_pred HHHHHcCCCEEEecCCCCCHHHHHHHHHhcCCCCCeE
Confidence 456779999999997 444444666767665 4665
No 452
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.07 E-value=2.6e+02 Score=26.97 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA 179 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~ 179 (376)
+.+.++++.+.|+|.|++++.|--.
T Consensus 22 ~~~li~~l~~~Gv~Gl~~~GstGE~ 46 (279)
T cd00953 22 FKKHCENLISKGIDYVFVAGTTGLG 46 (279)
T ss_pred HHHHHHHHHHcCCcEEEEcccCCCc
Confidence 4555688999999999999998654
No 453
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=26.00 E-value=2.7e+02 Score=25.96 Aligned_cols=76 Identities=16% Similarity=0.272 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh---hHHHHhccCCCC-----eeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA---WHGDVSEGCSIP-----FLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~---~~d~L~~~~~vP-----vl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
..+.++.|.+.|..++++.-|+.-. +.+.|.+..+++ |+.-..+++..+++.. +.++|.++|+++
T Consensus 19 a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~-------~~~~v~v~G~~~ 91 (236)
T TIGR01460 19 AAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRF-------EGEKVYVIGVGE 91 (236)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhC-------CCCEEEEECCHH
Confidence 3445566788899988877555322 356677744544 5555677777777642 234799999864
Q ss_pred hhchHHHHHHHHhcCCc
Q 017159 227 TLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 227 T~~s~~Y~~~L~~~G~e 243 (376)
..+.++.+|++
T Consensus 92 ------~~~~l~~~g~~ 102 (236)
T TIGR01460 92 ------LRESLEGLGFR 102 (236)
T ss_pred ------HHHHHHHcCCc
Confidence 35566777876
No 454
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=25.97 E-value=1.3e+02 Score=23.66 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=32.0
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHH---HhccCCCCeeccHHHHHHHHHH
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGD---VSEGCSIPFLHVGECVAKELKE 205 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~---L~~~~~vPvl~Iveat~~~~~~ 205 (376)
.+.+++..+.+++||.|......+. +.+..+||++.+- +.+++-.
T Consensus 20 ~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~--s~~eLG~ 67 (82)
T PRK13602 20 VKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD--SMKKLGK 67 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC--CHHHHHH
Confidence 3456778899999999998776444 4566789998765 3344444
No 455
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=25.78 E-value=2.6e+02 Score=27.70 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+.++.+.+.|+..|+|.+++ . +.++.+.-+.|++.+
T Consensus 96 ~a~~~a~~~ga~vIaIT~~~--~-L~~~a~~~~~~~i~i 131 (337)
T PRK08674 96 SAVEQALKRGAKIIAITSGG--K-LKEMAKEHGLPVIIV 131 (337)
T ss_pred HHHHHHHHCCCeEEEECCCc--h-HHHHHHhcCCeEEEe
Confidence 33456777899999999876 2 455544435566654
No 456
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.77 E-value=6.5e+02 Score=26.03 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=24.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcc
Q 017159 83 NTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPAL 125 (376)
Q Consensus 83 k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~i 125 (376)
+.|+|+++..+.-.-+=++.+++...+. ...|++.++-|.+
T Consensus 120 ~~I~V~~tC~~~liGdDi~~v~~~~~~~--~~~pvi~v~t~gf 160 (443)
T TIGR01862 120 KAISVYATCPTGLIGDDIEAVAKEVSKE--IGKDVVAVNCPGF 160 (443)
T ss_pred ceEEEECCChHHHhccCHHHHHHHHHHh--cCCCEEEEecCCc
Confidence 5677777766666666666666655321 1256776666554
No 457
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=25.73 E-value=1.7e+02 Score=24.39 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh--HHHHhccCCCC-------eeccHHHHHHHHHHhcCCCCcCCCCceEEEeecc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW--HGDVSEGCSIP-------FLHVGECVAKELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vP-------vl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
..+.++.+.+.|...++|-+|-.... .+.-.+.+.+| .++ ++.+++.+++.| -.++.+--
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~-~e~I~~ia~~~g----------~~~i~pGy 82 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLN-IEAIIDIARKEG----------ADAIHPGY 82 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTS-HHHHHHHHHHTT----------ESEEESTS
T ss_pred HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhcc-HHHHhhHhhhhc----------Cccccccc
Confidence 45566778889999999999975433 33333333333 244 567777777654 34555544
Q ss_pred hhhc-hHHHHHHHHhcCCceeecCc
Q 017159 226 ATLS-AGFYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 226 ~T~~-s~~Y~~~L~~~G~evv~p~~ 249 (376)
+-++ ..-+.+.+++.|+.++-|+.
T Consensus 83 g~lse~~~fa~~~~~~gi~fiGp~~ 107 (110)
T PF00289_consen 83 GFLSENAEFAEACEDAGIIFIGPSP 107 (110)
T ss_dssp STTTTHHHHHHHHHHTT-EESSS-H
T ss_pred chhHHHHHHHHHHHHCCCEEECcCh
Confidence 4333 33477778888998887764
No 458
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=25.71 E-value=2.9e+02 Score=24.55 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=26.7
Q ss_pred HHHHHHcCCcEEEEeCCCc---hh------h--HHHHhccCCCCeeccH---HHHHHHHHHhcC
Q 017159 159 RAFLEQAGARCIVMPCHIS---HA------W--HGDVSEGCSIPFLHVG---ECVAKELKEAKL 208 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA---H~------~--~d~L~~~~~vPvl~Iv---eat~~~~~~~g~ 208 (376)
++.+.+.|+|++.+.---. |+ + +.++.+.+++|++-+. ...+..+.+.|.
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~Ga 171 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGITPENIPELREAGA 171 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS--TTTHHHHHHTT-
T ss_pred HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCC
Confidence 4456678899887754311 11 1 4555566667766443 233445555554
No 459
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=25.69 E-value=6.1e+02 Score=24.41 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=59.7
Q ss_pred HHHcCCcEEEEeCC------Cchhh-HHHHhccCCCCeeccHH-----------------HHHHHHHHhcCCCCcCCCCc
Q 017159 162 LEQAGARCIVMPCH------ISHAW-HGDVSEGCSIPFLHVGE-----------------CVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 162 L~~~Gad~IVIaCN------TAH~~-~d~L~~~~~vPvl~Ive-----------------at~~~~~~~g~k~~~~~~~~ 217 (376)
.++.|||-|=+|+| |.++- ..+..+..++|+.-|+. .=++.+++.|.+ +-
T Consensus 17 A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~------GV 90 (241)
T COG3142 17 AQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQ------GV 90 (241)
T ss_pred HHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCC------cE
Confidence 56789999888887 44554 67777778999877754 335566777753 44
Q ss_pred eEEEeecchhhchHHHHHHHHhc-CCceeec
Q 017159 218 RIGVLATDATLSAGFYQEKLQNQ-GFEVVLP 247 (376)
Q Consensus 218 rVGlLaT~~T~~s~~Y~~~L~~~-G~evv~p 247 (376)
.+|.|.+.+++.....++.++.. |+++..-
T Consensus 91 V~G~lt~dg~iD~~~le~Li~aA~gL~vTFH 121 (241)
T COG3142 91 VLGALTADGNIDMPRLEKLIEAAGGLGVTFH 121 (241)
T ss_pred EEeeecCCCccCHHHHHHHHHHccCCceeee
Confidence 78999999999999999988775 6666544
No 460
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=25.67 E-value=8.8e+02 Score=26.30 Aligned_cols=131 Identities=13% Similarity=0.038 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchh----hHHHHhccCCCCeec-c-------------HHHHHHHHHHhcCCC
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHA----WHGDVSEGCSIPFLH-V-------------GECVAKELKEAKLKP 210 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~----~~d~L~~~~~vPvl~-I-------------veat~~~~~~~g~k~ 210 (376)
+++.+.....++.|.+.|||+|++-+.+.-. ..+.+++..++|++- + ++.+++.+...+.
T Consensus 121 ~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~~~~-- 198 (612)
T PRK08645 121 EEIRREFREQIDALLEEGVDGLLLETFYDLEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALKELVAAGA-- 198 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHHHHHhCCC--
Confidence 7889999999999999999999998776432 245555443467531 1 2344444443321
Q ss_pred CcCCCCceEEEeecc-hhhchHHHHHHHHhc-C-CceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCC
Q 017159 211 LEAGSGVRIGVLATD-ATLSAGFYQEKLQNQ-G-FEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAV 287 (376)
Q Consensus 211 ~~~~~~~rVGlLaT~-~T~~s~~Y~~~L~~~-G-~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~ga 287 (376)
.-||+=+|. ...-....+.. ... . .-.++|+...... ..-. .......+.+.+.+..+.+.||
T Consensus 199 ------~avGiNC~~~p~~~~~~l~~l-~~~~~~pl~vypNaG~~~~------~~~~-~~~~~~p~~~~~~~~~~~~~Ga 264 (612)
T PRK08645 199 ------DVVGLNCGLGPYHMLEALERI-PIPENAPLSAYPNAGLPEY------VDGR-YVYSANPEYFAEYALEFVEQGV 264 (612)
T ss_pred ------CEEEecCCCCHHHHHHHHHHH-HhccCceEEEEECCCCCCC------CCCc-cccCCCHHHHHHHHHHHHHhCC
Confidence 256777764 32222223322 221 2 2233666533210 0000 0001122346667777777888
Q ss_pred CEEEECCCc
Q 017159 288 NAVIIGSDE 296 (376)
Q Consensus 288 DaVILGCTE 296 (376)
. ||=||-.
T Consensus 265 ~-iiGGCCg 272 (612)
T PRK08645 265 R-LIGGCCG 272 (612)
T ss_pred C-EEeEecC
Confidence 5 7788853
No 461
>PRK05926 hypothetical protein; Provisional
Probab=25.51 E-value=6.5e+02 Score=25.52 Aligned_cols=137 Identities=16% Similarity=0.125 Sum_probs=74.8
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.+.|.|.||.+|....+||..+++...+. .+.+-+..-. +..+.. +. ...... ..+.++.
T Consensus 115 ~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~---~p~i~i~a~s--~~Ei~~-----~~-~~~~~~---------~~e~l~~ 174 (370)
T PRK05926 115 ITETHIVAGCFPSCNLAYYEELFSKIKQN---FPDLHIKALT--AIEYAY-----LS-KLDNLP---------VKEVLQT 174 (370)
T ss_pred CCEEEEEeCcCCCCCHHHHHHHHHHHHHh---CCCeeEEECC--HHHHHH-----HH-hhcCCC---------HHHHHHH
Confidence 47899999999988889999888877642 1112111100 100000 00 000011 2334567
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH---HHHHHHHHhcCCCCcCCCCceEEEeecchhhchHH-HHHHH
Q 017159 162 LEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE---CVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGF-YQEKL 237 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive---at~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~-Y~~~L 237 (376)
|.++|+|. +++|.+-.+.+++++.+.-.... .+ .+.+.+++.|++ ... -+|.|---|.+..+ .--.|
T Consensus 175 LkeAGl~~--~~g~GaEi~~e~~r~~~~p~~~t-~~e~l~~i~~a~~~Gi~----~~s--gmi~G~gEt~edrv~~l~~L 245 (370)
T PRK05926 175 LKIAGLDS--IPGGGAEILVDEIRETLAPGRLS-SQGFLEIHKTAHSLGIP----SNA--TMLCYHRETPEDIVTHMSKL 245 (370)
T ss_pred HHHcCcCc--cCCCCchhcCHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCc----ccC--ceEEeCCCCHHHHHHHHHHH
Confidence 88999995 67776666677777644211111 13 567778888875 111 15666666665443 22223
Q ss_pred Hhc-----CCceeec
Q 017159 238 QNQ-----GFEVVLP 247 (376)
Q Consensus 238 ~~~-----G~evv~p 247 (376)
++. |+..++|
T Consensus 246 r~Lq~~t~gf~~fIp 260 (370)
T PRK05926 246 RALQDKTSGFKNFIL 260 (370)
T ss_pred HhcCCccCCeeeeEe
Confidence 332 6777777
No 462
>PLN02591 tryptophan synthase
Probab=25.37 E-value=6.1e+02 Score=24.32 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=8.7
Q ss_pred CCeEeecCCcch
Q 017159 115 PPFVVCNDPALN 126 (376)
Q Consensus 115 ~p~il~s~p~ip 126 (376)
++|++.-+|+..
T Consensus 5 i~yi~aG~P~~e 16 (250)
T PLN02591 5 IPYITAGDPDLD 16 (250)
T ss_pred EEEEeCCCCCHH
Confidence 577777888764
No 463
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=25.30 E-value=1.7e+02 Score=25.85 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCee-ccHHHHH
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFL-HVGECVA 200 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl-~Iveat~ 200 (376)
++.|++.|++.+ -+||.+.-.++|.+.. ++.++ ..=++.+
T Consensus 5 v~~L~~~Gv~~vfGvPg~~~~~l~dal~~--~i~~i~~~~ee~a 46 (157)
T TIGR03845 5 YNILKDAGIDLVASVPCDNLKNLLPLIEK--DFRHIPLTREEEG 46 (157)
T ss_pred HHHHHHCCCeEEEecCcHhHHHHHHHHHh--CCcEEecCChHHH
Confidence 466889999966 8999988888999954 37777 4434333
No 464
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=25.25 E-value=5.3e+02 Score=23.62 Aligned_cols=112 Identities=11% Similarity=0.029 Sum_probs=57.9
Q ss_pred HHHHHHH--hcCCCCcCCCCceEEEeecch--h--hchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCC--hHH
Q 017159 199 VAKELKE--AKLKPLEAGSGVRIGVLATDA--T--LSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRD--MEG 270 (376)
Q Consensus 199 t~~~~~~--~g~k~~~~~~~~rVGlLaT~~--T--~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~--~~~ 270 (376)
+++++.+ +|++ +||+++.+. + .+..-|++.++++|+++.... . ... ..+..++ +-.
T Consensus 106 a~~~L~~~~~G~~--------~Ia~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~-~-~~~------~~~~~~~ai~~~ 169 (247)
T cd06276 106 ALQEGLEKLKKYK--------KLILVFPNKTAIPKEIKRGFERFCKDYNIETEIIN-D-YEN------REIEKGDLYIIL 169 (247)
T ss_pred HHHHHHHHhcCCC--------EEEEEecCccHhHHHHHHHHHHHHHHcCCCccccc-c-cch------hhccCCcEEEEe
Confidence 5677777 7765 999997643 1 122338888999998653211 0 000 0011111 100
Q ss_pred HHHHHHHHHHHHhhCC----CCEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHh
Q 017159 271 ARNLLRIGIQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 271 a~~~l~~~i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
.......+++.+.+.| -|.-|.|+...++..-. .+ ++..| =+...+++.+++.+..
T Consensus 170 ~d~~A~g~~~~l~~~g~~iP~disvigfd~~~~~~~~-~p-~lttv~~~~~~~g~~a~~~L~~ 230 (247)
T cd06276 170 SDTDLVFLIKKARESGLLLGKDIGIISYNDTPLKEIL-RN-GITTISTDFENMGKKAAEMVLN 230 (247)
T ss_pred CHHHHHHHHHHHHHcCCcCCceeEEEEecCchhhhcc-CC-CceEEecCHHHHHHHHHHHHhc
Confidence 1122233334454444 37888888887654211 11 12333 3567777777777655
No 465
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=25.25 E-value=67 Score=32.52 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHG 182 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d 182 (376)
++.+|.++-|+|+++++--|+|=.|.
T Consensus 175 eA~~Fv~~TgvD~LAvaiGt~HG~Yk 200 (347)
T TIGR01521 175 EAADFVKKTKVDALAVAIGTSHGAYK 200 (347)
T ss_pred HHHHHHHHHCcCEEehhcccccCCcC
Confidence 34466778899999999999998875
No 466
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=25.15 E-value=3.7e+02 Score=27.33 Aligned_cols=82 Identities=22% Similarity=0.164 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh------HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 147 IRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAW------HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 147 ~~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~------~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVG 220 (376)
+|..-.+.+++.+......|+. |+..|.|-|.- ++++.+. -++-++.+...| .++-
T Consensus 88 DW~~a~ELIrRs~aeA~~~g~~-ia~GaGTD~L~~~~~~sld~V~~A--------Y~eQ~~~ve~~G---------g~~I 149 (382)
T PF06187_consen 88 DWAAARELIRRSAAEARAVGAR-IACGAGTDQLDPAPAASLDDVIAA--------YEEQLEAVEAAG---------GRVI 149 (382)
T ss_dssp -HHHHHHHHHHHHHHHHTSS---EEEEE--TTS---TT--HHHHHHH--------HHHHHHHHHHTT-----------EE
T ss_pred ChHHHHHHHHHHHHHHHhcCCc-EEeecCcCCCCCCCCCCHHHHHHH--------HHHHHHHHHHcC---------CeEE
Confidence 4688888888877777666665 77888887754 2333222 234455555554 3788
Q ss_pred Eeecchhhc--------hHHHHHHHHhcCCceee
Q 017159 221 VLATDATLS--------AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 221 lLaT~~T~~--------s~~Y~~~L~~~G~evv~ 246 (376)
|+++++-.+ ..+|.+.|++..-.|++
T Consensus 150 LMASRaLA~~A~~p~DY~~VY~~lL~q~~~PVIL 183 (382)
T PF06187_consen 150 LMASRALAAVARSPDDYLRVYDRLLSQADEPVIL 183 (382)
T ss_dssp E---HHHHHH--SHHHHHHHHHHHHHH-SS-EEE
T ss_pred EeehHHHHHhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999977443 45689999887666665
No 467
>PRK06847 hypothetical protein; Provisional
Probab=25.15 E-value=52 Score=32.37 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.0
Q ss_pred cccCCeEEEEc-CCChHHHHHHHHH
Q 017159 79 LNQANTIGIIG-GVSVSSTLNFLGK 102 (376)
Q Consensus 79 ~~~~k~IGIIG-GmGp~AT~~f~~k 102 (376)
|.+++.|.||| |++.++++..+++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHh
Confidence 45688999999 9999999888765
No 468
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=25.09 E-value=5.3e+02 Score=23.51 Aligned_cols=159 Identities=10% Similarity=0.116 Sum_probs=77.8
Q ss_pred HHHHHHcCCcEEEEeCCCc-----h-hhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcC
Q 017159 159 RAFLEQAGARCIVMPCHIS-----H-AWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEA 213 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA-----H-~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~ 213 (376)
++.|.+.++|.|++.-.+. + .+++++.+ .++|++-+ ....++.+.+.|.+
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~G~~---- 122 (273)
T cd01541 48 LENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEK-LGIPYVFINASYEELNFPSLVLDDEKGGYKATEYLIELGHR---- 122 (273)
T ss_pred HHHHHHcCCCEEEEeccccccccccHHHHHHHHH-CCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHcCCc----
Confidence 3456778999998753221 1 33455533 35665533 13345666666653
Q ss_pred CCCceEEEeecch----hhchHHHHHHHHhcCCcee----ec-Ccc-ccccchHHHHHHH-hcC-ChHH----HHHHHHH
Q 017159 214 GSGVRIGVLATDA----TLSAGFYQEKLQNQGFEVV----LP-DKA-TMEHVIIPTIEAL-NHR-DMEG----ARNLLRI 277 (376)
Q Consensus 214 ~~~~rVGlLaT~~----T~~s~~Y~~~L~~~G~evv----~p-~~~-~q~~~l~~~ie~l-k~G-~~~~----a~~~l~~ 277 (376)
+|++++... ..+..-|.+.++++|.++. .. ..+ ..+ .....++++ +.+ ..+. .......
T Consensus 123 ----~i~~l~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~av~~~~d~~a~g 197 (273)
T cd01541 123 ----KIAGIFKADDLQGVKRMKGFIKAYREHGIPFNPSNVITYTTEEKEE-KLFEKIKEILKRPERPTAIVCYNDEIALR 197 (273)
T ss_pred ----CEEEecCCCcccHHHHHHHHHHHHHHcCCCCChHHEEeccccchhh-HHHHHHHHHHcCCCCCCEEEEcCcHHHHH
Confidence 888776432 2222337788888886431 11 111 101 011223232 221 1111 1122233
Q ss_pred HHHHHhhCC----CCEEEECCCccccccCCCCCCCCeeeeh-HHHHHHHHHHHHHhc
Q 017159 278 GIQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDP-MDALARSTVTWARSN 329 (376)
Q Consensus 278 ~i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvIDp-~~~lA~a~v~~a~~~ 329 (376)
+++.+.+.| -|.-|.|+-..+.... ....+..|+. ...+++.+++.+...
T Consensus 198 ~~~al~~~g~~~p~dv~vvg~d~~~~~~~--~~~~~t~i~~~~~~~g~~a~~~l~~~ 252 (273)
T cd01541 198 VIDLLKELGLKIPEDISVVGFDDSYLSVA--SEVKLTTVTHPKEQMGEDAAKMILKM 252 (273)
T ss_pred HHHHHHHcCCCCCCcEEEEEcCCcchhhh--ccCcceEEecCHHHHHHHHHHHHHHH
Confidence 445555555 3777778766664431 1122344543 356778777777554
No 469
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=24.81 E-value=3e+02 Score=27.19 Aligned_cols=104 Identities=18% Similarity=0.240 Sum_probs=63.7
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
.|+.|=+-|-.-...-+..+||..... +.| +++++.-.. |..+.. -+ ++. .+-++
T Consensus 118 pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~---~~fvi~ART---da~~~~----------~l----d~A----I~Ra~ 173 (289)
T COG2513 118 PKRCGHLPGKELVSIDEMVDRIKAAVEARRD---PDFVIIART---DALLVE----------GL----DDA----IERAQ 173 (289)
T ss_pred chhcCCCCCCCcCCHHHHHHHHHHHHHhccC---CCeEEEeeh---HHHHhc----------cH----HHH----HHHHH
Confidence 356666667777777778888877665 334 677765533 111110 01 222 22234
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCCCCee-ccHH------HHHHHHHHhcCC
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFL-HVGE------CVAKELKEAKLK 209 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl-~Ive------at~~~~~~~g~k 209 (376)
-..++|||.|..+.-+..--+.++.+.+++|++ ||.+ -+++.+++.|++
T Consensus 174 AY~eAGAD~if~~al~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~ 229 (289)
T COG2513 174 AYVEAGADAIFPEALTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVK 229 (289)
T ss_pred HHHHcCCcEEccccCCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCce
Confidence 456799999999998876668888888886643 3332 235566776653
No 470
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=24.59 E-value=3e+02 Score=28.53 Aligned_cols=112 Identities=9% Similarity=0.092 Sum_probs=71.0
Q ss_pred hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhcCCceeecCccccccchHHH
Q 017159 180 WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPT 259 (376)
Q Consensus 180 ~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ 259 (376)
.++.+-++.++..+.-.++....++.....| .+..+||+|++..+-... +-.+.+++.|+++-.++++.++. +...
T Consensus 261 ~~~a~~~~~Gv~~~~~~~el~~~~~~l~~~~--~~~g~rvaivs~sGG~g~-l~aD~~~~~Gl~lp~ls~~t~~~-L~~~ 336 (447)
T TIGR02717 261 AYDAAFKQAGVIRADSIEELFDLARLLSNQP--LPKGNRVAIITNAGGPGV-IATDACEENGLELAELSEATKNK-LRNI 336 (447)
T ss_pred HHHHHHHHCCeEEeCCHHHHHHHHHHHhcCC--CCCCCeEEEEECCchHHH-HHHHHHHHcCCCcCCCCHHHHHH-HHHh
Confidence 3677777889999998888877766654322 234579999999886553 56788899999876555554432 2111
Q ss_pred HHH-HhcCCh-H----HHHHHHHHHHHHHhhC-CCCEEEECCC
Q 017159 260 IEA-LNHRDM-E----GARNLLRIGIQLLLVR-AVNAVIIGSD 295 (376)
Q Consensus 260 ie~-lk~G~~-~----~a~~~l~~~i~~L~~~-gaDaVILGCT 295 (376)
+.. ...+++ + ...+.+.++++.+.+. ++|+|+...+
T Consensus 337 lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~ 379 (447)
T TIGR02717 337 LPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLT 379 (447)
T ss_pred CccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEcc
Confidence 110 001111 1 1346777888877754 7999996554
No 471
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=24.55 E-value=7.2e+02 Score=24.84 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhCCCCEEEECCCccccccCCCCCCCCeeeehHHHHHHHH
Q 017159 271 ARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARST 322 (376)
Q Consensus 271 a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~ 322 (376)
+....+..++.+.+.|+|.||-.|.-=-+-+.. ..++++.++++.++++.
T Consensus 345 s~~~~~~k~~~i~~~~a~~ivt~Cp~C~~ql~~--~~~~~v~h~~ell~~~l 394 (396)
T PRK11168 345 SQAIGAPLFRQIEESGADLVVTDCETCKWQIEM--STGLECEHPITLLAEAL 394 (396)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCcHhHHHHHHh--cCCCCCCCHHHHHHHHh
Confidence 444445566777778999999999642221221 23568899999998864
No 472
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=24.49 E-value=4.1e+02 Score=26.49 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhc--cCC------CCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW-HGDVSE--GCS------IPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~--~~~------vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
..+.++.|.+.| +-+++.+|-...- -+..++ ..+ =-++|-.-+++..++... ...++|-+||+.
T Consensus 43 s~e~l~~L~~~g-K~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~------~~~k~Vyvig~~ 115 (306)
T KOG2882|consen 43 SPEALNLLKSLG-KQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIADYLKKRK------PFGKKVYVIGEE 115 (306)
T ss_pred hHHHHHHHHHcC-CcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHHHHHHHhC------cCCCeEEEecch
Confidence 455567788899 6565555544433 333322 112 237787888888887764 245799999996
Q ss_pred hhhchHHHHHHHHhcCCceeecCc
Q 017159 226 ATLSAGFYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 226 ~T~~s~~Y~~~L~~~G~evv~p~~ 249 (376)
+ ..+.|++.|++...-..
T Consensus 116 g------i~~eL~~aG~~~~g~~~ 133 (306)
T KOG2882|consen 116 G------IREELDEAGFEYFGGGP 133 (306)
T ss_pred h------hhHHHHHcCceeecCCC
Confidence 5 57778889988875443
No 473
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=24.49 E-value=1.5e+02 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=14.9
Q ss_pred eEEEeecchhhchHHHH-------HHHHhcCCceeec
Q 017159 218 RIGVLATDATLSAGFYQ-------EKLQNQGFEVVLP 247 (376)
Q Consensus 218 rVGlLaT~~T~~s~~Y~-------~~L~~~G~evv~p 247 (376)
+||++-.. +...+|. +.++++|+++++-
T Consensus 1 ~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~~~~~ 35 (268)
T cd06306 1 KLCVLYPH--LKDAYWLSVNYGMVEEAKRLGVSLKLL 35 (268)
T ss_pred CeEEEcCC--CCCHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 35665542 3444555 3355567776654
No 474
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=24.25 E-value=1.3e+02 Score=32.51 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhh--HHHHhcc-----CCCCeec
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAW--HGDVSEG-----CSIPFLH 194 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~-----~~vPvl~ 194 (376)
+-+..|+++|||.+=+++++.-.. +..|++. +++|++-
T Consensus 49 ~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVA 93 (606)
T PRK00694 49 RQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVA 93 (606)
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEe
Confidence 334669999999999999998776 7788887 8999873
No 475
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=24.22 E-value=3e+02 Score=26.15 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA 179 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~ 179 (376)
+.+.+++|.+.|++.|++..+|.-.
T Consensus 20 ~~~~i~~l~~~Gv~gi~~~GstGE~ 44 (281)
T cd00408 20 LRRLVEFLIEAGVDGLVVLGTTGEA 44 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccc
Confidence 4555678888999999999987643
No 476
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=24.15 E-value=1.4e+02 Score=28.53 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHA 179 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~ 179 (376)
.+.++.+++.|+|+|-+.|+..+.
T Consensus 114 ~~~a~~~~~~G~d~ielN~~cP~~ 137 (289)
T cd02810 114 VELARKIERAGAKALELNLSCPNV 137 (289)
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCC
Confidence 344566778899999998876653
No 477
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=24.10 E-value=1.3e+02 Score=26.44 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=35.3
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcC
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKL 208 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~ 208 (376)
++.|++.|++.+ .+|......+++.+.+..++.++..-.+......+.|+
T Consensus 4 ~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gy 54 (162)
T cd07038 4 LERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGY 54 (162)
T ss_pred HHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHH
Confidence 467899999966 66666666679999665578888887776555444444
No 478
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=24.01 E-value=2.5e+02 Score=23.43 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=26.9
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHH---hccCCCCeec
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDV---SEGCSIPFLH 194 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L---~~~~~vPvl~ 194 (376)
.+.+++..+.+|+||.|......+.+ .+..+||++.
T Consensus 34 lkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~ 72 (108)
T PTZ00106 34 LKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHH 72 (108)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEE
Confidence 34466778999999999987765444 4556899875
No 479
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=23.97 E-value=4.8e+02 Score=24.95 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=16.6
Q ss_pred CceEEEeecchhhchHHHH-------HHHHhcCCceeec
Q 017159 216 GVRIGVLATDATLSAGFYQ-------EKLQNQGFEVVLP 247 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~-------~~L~~~G~evv~p 247 (376)
.+.||++... ....+|. +.++++|+++++-
T Consensus 59 ~~~i~vi~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~ 95 (341)
T PRK10703 59 TKSIGLLATS--SEAPYFAEIIEAVEKNCYQKGYTLILC 95 (341)
T ss_pred CCeEEEEeCC--CCCchHHHHHHHHHHHHHHCCCEEEEE
Confidence 3579988753 2334444 3345567666543
No 480
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=23.81 E-value=2.7e+02 Score=28.02 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=46.0
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
+.+++|.+|||-...+..|..-.......-+. .+.+...-. .+|. +. +. -++.+.
T Consensus 160 k~~~vG~vgg~~~p~v~~f~~gF~~Gak~~np-~i~v~v~~~---------gsf~---------D~--~k----~k~~a~ 214 (345)
T COG1744 160 KSGKVGFVGGMDIPEVNRFINGFLAGAKSVNP-DIKVKVVYV---------GSFS---------DP--AK----GKEAAN 214 (345)
T ss_pred cCCceeEEecccchhhHHHHHHHHHHHHhhCC-CccEEEEEe---------cCcc---------Ch--HH----HHHHHH
Confidence 46789999999999998888766665543211 122211110 0111 00 11 123456
Q ss_pred HHHHcCCcEEEEeCCCchhh
Q 017159 161 FLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~ 180 (376)
.|.+.|||+|.-++.+.+..
T Consensus 215 ~li~~GaDVI~~~ag~~~~g 234 (345)
T COG1744 215 ALIDQGADVIYPAAGGTGVG 234 (345)
T ss_pred HHHhcCCCEEEecCCCCcch
Confidence 78899999999999887765
No 481
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=23.71 E-value=2.6e+02 Score=28.96 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCcCCCCceEEEeecchhhchHHHHHHHHhcC--CceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCC-
Q 017159 210 PLEAGSGVRIGVLATDATLSAGFYQEKLQNQG--FEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRA- 286 (376)
Q Consensus 210 ~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~G--~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~g- 286 (376)
|.|.-+. ||||++.+....-+-+.+.+..+. +++.+.....|. +++...+.++++.+...+
T Consensus 124 ~lP~~p~-~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG---------------~~a~~~i~~al~~~~~~~~ 187 (432)
T TIGR00237 124 PLPHFPK-RVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQG---------------EGAVQSIVESIELANTKNE 187 (432)
T ss_pred CCCCCCC-EEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccC---------------ccHHHHHHHHHHHhhcCCC
Q ss_pred CCEEEEC
Q 017159 287 VNAVIIG 293 (376)
Q Consensus 287 aDaVILG 293 (376)
+|+||++
T Consensus 188 ~dviii~ 194 (432)
T TIGR00237 188 CDVLIVG 194 (432)
T ss_pred CCEEEEe
No 482
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.56 E-value=1.2e+02 Score=30.05 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=23.7
Q ss_pred HHHHHHHcCCcEEEEeCCCchh---hHHHHhccCCCCeecc
Q 017159 158 KRAFLEQAGARCIVMPCHISHA---WHGDVSEGCSIPFLHV 195 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~---~~d~L~~~~~vPvl~I 195 (376)
.++.+.+.|+|.|++..+.... .++++++. ++|++.+
T Consensus 72 ~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~-gIpVV~~ 111 (336)
T PRK15408 72 LINNFVNQGYNAIIVSAVSPDGLCPALKRAMQR-GVKVLTW 111 (336)
T ss_pred HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHC-CCeEEEe
Confidence 3455777899999998876653 34444433 5665543
No 483
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.46 E-value=6.3e+02 Score=23.78 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEe------------------------CCCchhh--HHHHhccCCCC-ee----cc-----
Q 017159 152 SQNLRHKRAFLEQAGARCIVMP------------------------CHISHAW--HGDVSEGCSIP-FL----HV----- 195 (376)
Q Consensus 152 ~~~l~~~~~~L~~~Gad~IVIa------------------------CNTAH~~--~d~L~~~~~vP-vl----~I----- 195 (376)
.+.+.+.++.|+++|||+|=+- -|+...+ +.++++..++| ++ +.
T Consensus 13 ~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G 92 (242)
T cd04724 13 LETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYG 92 (242)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhC
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhcCCceee
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~ 246 (376)
++.-++.+++.|.+ -+-+---+.- +...|.+.+.++|++.+.
T Consensus 93 ~~~fi~~~~~aG~~--------giiipDl~~e-e~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 93 LERFLRDAKEAGVD--------GLIIPDLPPE-EAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHHHHHHCCCc--------EEEECCCCHH-HHHHHHHHHHHcCCcEEE
No 484
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=23.44 E-value=5.7e+02 Score=25.48 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV 195 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I 195 (376)
...++.+++ |+-+|+=|+.+.... ...+.+..+||+|..
T Consensus 53 ~~~c~Li~~-gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~ 92 (363)
T cd06381 53 QEACDLMNQ-GILALVTSTGCASAIALQSLTDAMHIPHLFI 92 (363)
T ss_pred HHHHHHHhc-CcEEEEecCChhHHHHHHHHhhCCCCCEEEe
Confidence 333444455 999999888876554 556667778888863
No 485
>PRK08617 acetolactate synthase; Reviewed
Probab=23.34 E-value=2.5e+02 Score=29.69 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=50.7
Q ss_pred HHHHHHcCCcEEEE-eCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEE-eecchhhchHHHHHH
Q 017159 159 RAFLEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGV-LATDATLSAGFYQEK 236 (376)
Q Consensus 159 ~~~L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGl-LaT~~T~~s~~Y~~~ 236 (376)
++.|++.|++.|.. |-.+.-++++++.+ -++.++..-.+......+.|+- .-.+++|+ +.|.+.=..+.....
T Consensus 12 ~~~L~~~GV~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gya----r~tg~~gv~~vt~GpG~~N~l~gl 86 (552)
T PRK08617 12 VDSLINQGVKYVFGIPGAKIDRVFDALED-SGPELIVTRHEQNAAFMAAAIG----RLTGKPGVVLVTSGPGVSNLATGL 86 (552)
T ss_pred HHHHHHcCCCEEEeCCCccHHHHHHHHhh-CCCCEEEeccHHHHHHHHHhHh----hhcCCCEEEEECCCCcHhHhHHHH
Confidence 46688999998855 55445567999975 3788998888876665555552 12245665 555444333334433
Q ss_pred HHhc--CCceeec
Q 017159 237 LQNQ--GFEVVLP 247 (376)
Q Consensus 237 L~~~--G~evv~p 247 (376)
.+++ +..+++.
T Consensus 87 ~~A~~~~~Pvlvi 99 (552)
T PRK08617 87 VTATAEGDPVVAI 99 (552)
T ss_pred HHHhhcCCCEEEE
Confidence 3333 5555544
No 486
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.30 E-value=3.1e+02 Score=22.82 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=38.3
Q ss_pred hchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcC------ChHHHHHHHHHHHHHHhhCCC-C-EEEECCCc
Q 017159 228 LSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHR------DMEGARNLLRIGIQLLLVRAV-N-AVIIGSDE 296 (376)
Q Consensus 228 ~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G------~~~~a~~~l~~~i~~L~~~ga-D-aVILGCTE 296 (376)
+...+....|+..|++++......+.+.+...+.+.+.. ........+++.++.|.+++. + .+++|.+-
T Consensus 14 lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 14 RGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 334556677888899998877644432243333332211 112345566777777777644 2 35566553
No 487
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=23.26 E-value=3.5e+02 Score=22.68 Aligned_cols=50 Identities=16% Similarity=0.029 Sum_probs=33.9
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcC
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKL 208 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~ 208 (376)
++.|++.|++.+ .+|+.....+++.+++..++.++....+....-...|+
T Consensus 4 ~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~ 54 (154)
T cd06586 4 AEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGY 54 (154)
T ss_pred HHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHH
Confidence 466889999966 67777666678888765567777776665444444443
No 488
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=23.24 E-value=1.3e+02 Score=27.55 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeec
Q 017159 155 LRHKRAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLH 194 (376)
Q Consensus 155 l~~~~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~ 194 (376)
+.+..+..++.++||| |+|- -+-.++.++.+++++|++.
T Consensus 110 l~~~~~~i~~~~pD~iEvLPG-v~Pkvi~~i~~~t~~piIA 149 (181)
T COG1954 110 LEKGIKQIEKSEPDFIEVLPG-VMPKVIKEITEKTHIPIIA 149 (181)
T ss_pred HHHHHHHHHHcCCCEEEEcCc-ccHHHHHHHHHhcCCCEEe
Confidence 4556677888999999 8898 4566799999999999884
No 489
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=23.22 E-value=6.8e+02 Score=24.08 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=16.6
Q ss_pred ceEEEeecchhhch---HHHHHHHHhcCCcee
Q 017159 217 VRIGVLATDATLSA---GFYQEKLQNQGFEVV 245 (376)
Q Consensus 217 ~rVGlLaT~~T~~s---~~Y~~~L~~~G~evv 245 (376)
++|+++..+.-.-. ..+++.+++.|.+++
T Consensus 137 ~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv 168 (333)
T cd06328 137 KKIATLAQDYAFGRDGVAAFKAALEKLGAAIV 168 (333)
T ss_pred CeEEEEecCccccHHHHHHHHHHHHhCCCEEe
Confidence 47777766543221 235566666677765
No 490
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=23.19 E-value=3.3e+02 Score=26.26 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEEEc--CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 85 IGIIG--GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 85 IGIIG--GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
|-+.| |-++.=|.+=.+++++.+.+.-.+..|++. +-...+- ++ ..+.++..
T Consensus 39 i~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~via--------------------gv~~~~~--~~----ai~~a~~a 92 (288)
T cd00954 39 LYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIA--------------------HVGSLNL--KE----SQELAKHA 92 (288)
T ss_pred EEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEe--------------------ccCCCCH--HH----HHHHHHHH
Q ss_pred HHcCCcEEEEeCCCchh--------hHHHHhccC-CCCee
Q 017159 163 EQAGARCIVMPCHISHA--------WHGDVSEGC-SIPFL 193 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~--------~~d~L~~~~-~vPvl 193 (376)
++.|||++++..--... +|+++.+.+ ++|++
T Consensus 93 ~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~ 132 (288)
T cd00954 93 EELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMI 132 (288)
T ss_pred HHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEE
No 491
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.19 E-value=4.2e+02 Score=25.43 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHIS 177 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTA 177 (376)
+.+.++.++++|+|.|-+-+...
T Consensus 104 ~~~~a~~~~~~G~d~iElN~~cP 126 (296)
T cd04740 104 FVEVAEKLADAGADAIELNISCP 126 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC
Confidence 45566778889999998866543
No 492
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=23.13 E-value=7.3e+02 Score=24.46 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch--------h-hHHHHhccCCCCeeccHHH
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISH--------A-WHGDVSEGCSIPFLHVGEC 198 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH--------~-~~d~L~~~~~vPvl~Ivea 198 (376)
..+.++.++++|+|.|.+-+-|.. . ++.++++.+++||++..+.
T Consensus 151 ~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI 203 (321)
T PRK10415 151 CVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDI 203 (321)
T ss_pred HHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCC
Confidence 345556789999999988765521 1 2567788889999987654
No 493
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=23.09 E-value=3.4e+02 Score=26.62 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=45.6
Q ss_pred CeEEEEcC--CChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 83 NTIGIIGG--VSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 83 k~IGIIGG--mGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
.-|-+.|. -++.=|.+=.+++.+.+.+.-....|+|. . - + ..+ +++. .+.++
T Consensus 40 ~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpvia-G----------~-------g--~~~--t~ea----i~lak 93 (299)
T COG0329 40 DGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIA-G----------V-------G--SNS--TAEA----IELAK 93 (299)
T ss_pred CEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEE-e----------c-------C--CCc--HHHH----HHHHH
Confidence 45777784 44444445556666666543233577653 1 1 1 111 1343 33456
Q ss_pred HHHHcCCcEEEEeCCCchh--------hHHHHhccCCCCe
Q 017159 161 FLEQAGARCIVMPCHISHA--------WHGDVSEGCSIPF 192 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~--------~~d~L~~~~~vPv 192 (376)
..++.|+|.+++..--... +|..+.+.+++|+
T Consensus 94 ~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPv 133 (299)
T COG0329 94 HAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPV 133 (299)
T ss_pred HHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCE
Confidence 6788999999775532211 2566666667764
No 494
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=23.02 E-value=3.1e+02 Score=26.33 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEEc--CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 85 IGIIG--GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 85 IGIIG--GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
|-+.| |-++.=|.+=.+++.+.+.+.-.+..|++. +-...+. ++ ..+.++..
T Consensus 36 i~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~--------------------gv~~~s~--~~----~i~~a~~a 89 (285)
T TIGR00674 36 IVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIA--------------------GTGSNAT--EE----AISLTKFA 89 (285)
T ss_pred EEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEE--------------------eCCCccH--HH----HHHHHHHH
Q ss_pred HHcCCcEEEEeCCCchh--------hHHHHhccCCCCee
Q 017159 163 EQAGARCIVMPCHISHA--------WHGDVSEGCSIPFL 193 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~--------~~d~L~~~~~vPvl 193 (376)
++.|+|.+++.--.... +|.++.+.+++||+
T Consensus 90 ~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~ 128 (285)
T TIGR00674 90 EDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPII 128 (285)
T ss_pred HHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEE
No 495
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=23.02 E-value=3.1e+02 Score=27.63 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH---HHHHHhcCCceeecC
Q 017159 194 HVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY---QEKLQNQGFEVVLPD 248 (376)
Q Consensus 194 ~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y---~~~L~~~G~evv~p~ 248 (376)
+..+.+.+.+...|.+ |+.|+.-+...+.+++ .+.|++.|+++.+.+
T Consensus 14 g~l~~l~~~l~~~g~~--------~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~ 63 (377)
T cd08188 14 GALKLAGRYARRLGAK--------KVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFS 63 (377)
T ss_pred CHHHHHHHHHHHcCCC--------eEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeC
Confidence 3445555556655543 8888776665555444 345666687776544
No 496
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=22.99 E-value=2.5e+02 Score=27.18 Aligned_cols=83 Identities=10% Similarity=0.112 Sum_probs=0.0
Q ss_pred EEEEc--CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 85 IGIIG--GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 85 IGIIG--GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
|-+.| |-++.=|.+=.+++++.+.+.-....|++.-- +...... ..+.++..
T Consensus 42 i~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagv------------------g~~~t~~--------ai~~a~~a 95 (293)
T PRK04147 42 LYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQV------------------GSVNTAE--------AQELAKYA 95 (293)
T ss_pred EEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecC------------------CCCCHHH--------HHHHHHHH
Q ss_pred HHcCCcEEEEeCCCchh--------hHHHHhccCCCCee
Q 017159 163 EQAGARCIVMPCHISHA--------WHGDVSEGCSIPFL 193 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~--------~~d~L~~~~~vPvl 193 (376)
++.|||++++..=-.+. +|+++.+.+++|++
T Consensus 96 ~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~ 134 (293)
T PRK04147 96 TELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMI 134 (293)
T ss_pred HHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEE
No 497
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=22.96 E-value=1.9e+02 Score=28.85 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
..+.++.|++.|+|+|-+...|
T Consensus 229 ~~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 229 YVQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred HHHHHHHHHHcCCCEEEeCCCC
Confidence 3445677899999999998876
No 498
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=22.93 E-value=2.7e+02 Score=27.79 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhh-HHHHh---ccCCC-------C-eeccHHHHHHHHHHhcCCCCcCCCCc
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMPCHISHAW-HGDVS---EGCSI-------P-FLHVGECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~---~~~~v-------P-vl~Iveat~~~~~~~g~k~~~~~~~~ 217 (376)
.++....++++.|++.|.++-||-|.|.-+. -+.+. ++++. - +=++..++++.+.+.+. ++-+
T Consensus 202 ~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p-----~~~~ 276 (312)
T COG3958 202 VMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENGP-----TPMR 276 (312)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcCC-----cceE
Confidence 4556677889999999999999999998886 22222 22211 1 22455667777777654 3445
Q ss_pred eEEEeecchhhchHHHHHHHHhcCCc
Q 017159 218 RIGVLATDATLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 218 rVGlLaT~~T~~s~~Y~~~L~~~G~e 243 (376)
|+|+=.+ +-. ++--...++.+|++
T Consensus 277 riGvp~~-fg~-sg~~~~Ll~~ygl~ 300 (312)
T COG3958 277 RIGVPDT-FGR-SGKADELLDYYGLD 300 (312)
T ss_pred EecCCch-hcc-ccchHHHHHHhCCC
Confidence 6665322 211 12225556666764
No 499
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.89 E-value=4.1e+02 Score=21.41 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHH-HHHHHHhcCCceeecCccccccchHHHHHHHhcCCh------
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGF-YQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM------ 268 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~-Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~------ 268 (376)
++.+++.+.+. ++|-++|+..+..... ++..+...|..+........ .......+..++.
T Consensus 3 i~~~~~~i~~~----------~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~iS~ 69 (139)
T cd05013 3 LEKAVDLLAKA----------RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHL---QLMSAANLTPGDVVIAISF 69 (139)
T ss_pred HHHHHHHHHhC----------CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHH---HHHHHHcCCCCCEEEEEeC
Confidence 35566666553 3899999976554333 66677777877765533211 1111111222221
Q ss_pred HHHHHHHHHHHHHHhhCCCCEEEECCCccc
Q 017159 269 EGARNLLRIGIQLLLVRAVNAVIIGSDEMQ 298 (376)
Q Consensus 269 ~~a~~~l~~~i~~L~~~gaDaVILGCTElp 298 (376)
.+....+.++++.+.++|+..|++.+..-.
T Consensus 70 ~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 70 SGETKETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 011133555667777889998888875543
No 500
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=22.84 E-value=2.6e+02 Score=28.66 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH---HHHHhcCCceeecCccccc---cchHHHHHHHhcCC
Q 017159 194 HVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ---EKLQNQGFEVVLPDKATME---HVIIPTIEALNHRD 267 (376)
Q Consensus 194 ~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~---~~L~~~G~evv~p~~~~q~---~~l~~~ie~lk~G~ 267 (376)
++..++...++..|.| ++.|+.-++..+.+.|+ +.|++.|+++-+-+.-..+ .-+...++-.|.++
T Consensus 56 gv~~Evg~dikn~gaK--------k~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~ 127 (465)
T KOG3857|consen 56 GVLAEVGDDIKNLGAK--------KTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKN 127 (465)
T ss_pred hhHHHHHHHHHhcCcc--------ceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcc
Confidence 3456778889998876 78877777777766665 6688899999887754333 12444455455444
Q ss_pred h
Q 017159 268 M 268 (376)
Q Consensus 268 ~ 268 (376)
.
T Consensus 128 f 128 (465)
T KOG3857|consen 128 F 128 (465)
T ss_pred c
Confidence 3
Done!