Query 017159
Match_columns 376
No_of_seqs 231 out of 1692
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 09:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ojc_A Putative aspartate/glut 100.0 6.7E-51 2.3E-55 382.0 21.4 225 82-327 2-230 (231)
2 3s81_A Putative aspartate race 100.0 1.1E-49 3.6E-54 381.7 16.5 227 82-330 26-254 (268)
3 1jfl_A Aspartate racemase; alp 100.0 1.3E-48 4.4E-53 364.4 18.4 225 82-328 1-227 (228)
4 2zsk_A PH1733, 226AA long hypo 100.0 2.5E-47 8.4E-52 355.5 24.1 222 82-327 1-225 (226)
5 3out_A Glutamate racemase; str 100.0 9.2E-40 3.2E-44 312.8 16.6 245 79-371 4-260 (268)
6 3ist_A Glutamate racemase; str 100.0 4.6E-39 1.6E-43 308.1 20.8 241 82-367 5-258 (269)
7 2vvt_A Glutamate racemase; iso 100.0 3.6E-38 1.2E-42 304.8 21.5 251 72-366 14-277 (290)
8 3uhf_A Glutamate racemase; str 100.0 8E-38 2.8E-42 300.1 17.3 242 75-366 16-271 (274)
9 2jfq_A Glutamate racemase; cel 100.0 2.8E-37 9.6E-42 298.0 19.8 247 75-368 17-277 (286)
10 2oho_A Glutamate racemase; iso 100.0 5.3E-37 1.8E-41 294.0 21.2 245 75-368 5-266 (273)
11 1zuw_A Glutamate racemase 1; ( 100.0 1.3E-36 4.3E-41 291.5 21.2 241 83-368 4-258 (272)
12 2gzm_A Glutamate racemase; enz 100.0 5.6E-36 1.9E-40 286.1 23.0 239 83-368 4-257 (267)
13 2dwu_A Glutamate racemase; iso 100.0 1.1E-35 3.7E-40 285.4 21.5 240 83-368 8-260 (276)
14 2jfn_A Glutamate racemase; cel 100.0 1.4E-33 4.8E-38 272.0 16.4 209 82-330 21-243 (285)
15 1b73_A Glutamate racemase; iso 100.0 1.3E-34 4.4E-39 274.5 8.9 230 84-369 2-244 (254)
16 2jfz_A Glutamate racemase; cel 100.0 1.5E-33 5E-38 267.5 15.6 234 84-365 2-254 (255)
17 3qvl_A Putative hydantoin race 99.9 7.1E-24 2.4E-28 200.2 14.0 166 147-328 50-217 (245)
18 2eq5_A 228AA long hypothetical 99.9 1.5E-23 5.1E-28 194.3 11.8 160 149-330 58-221 (228)
19 2xed_A Putative maleate isomer 99.9 4E-24 1.4E-28 204.8 7.8 211 82-329 25-254 (273)
20 2dgd_A 223AA long hypothetical 99.9 3.3E-24 1.1E-28 198.6 7.0 200 84-329 7-217 (223)
21 3ixl_A Amdase, arylmalonate de 99.9 4.2E-23 1.5E-27 194.2 7.9 163 151-330 51-227 (240)
22 1zuw_A Glutamate racemase 1; ( 96.3 0.023 7.7E-07 53.6 10.6 108 81-205 109-218 (272)
23 2gzm_A Glutamate racemase; enz 96.3 0.029 9.9E-07 52.6 11.2 109 81-206 108-218 (267)
24 2dwu_A Glutamate racemase; iso 96.2 0.025 8.7E-07 53.3 10.3 109 81-206 112-222 (276)
25 2jfq_A Glutamate racemase; cel 96.1 0.023 7.9E-07 54.0 10.0 109 81-206 127-238 (286)
26 3qvl_A Putative hydantoin race 95.9 0.02 6.8E-07 53.3 8.2 57 150-206 157-214 (245)
27 3ojc_A Putative aspartate/glut 95.7 0.017 5.9E-07 53.1 6.7 103 217-324 3-115 (231)
28 2qh8_A Uncharacterized protein 95.7 0.34 1.2E-05 44.9 15.8 79 158-246 61-174 (302)
29 3out_A Glutamate racemase; str 95.7 0.052 1.8E-06 51.2 10.1 110 80-206 109-218 (268)
30 2vvt_A Glutamate racemase; iso 95.6 0.026 8.7E-07 53.8 7.9 108 81-205 129-238 (290)
31 3c3k_A Alanine racemase; struc 95.5 0.56 1.9E-05 42.7 16.2 157 159-328 57-252 (285)
32 3hcw_A Maltose operon transcri 95.5 0.51 1.8E-05 43.3 16.1 210 81-328 6-260 (295)
33 3ist_A Glutamate racemase; str 95.2 0.067 2.3E-06 50.5 8.9 57 149-205 161-219 (269)
34 3gv0_A Transcriptional regulat 95.0 0.56 1.9E-05 42.8 14.7 157 162-329 62-257 (288)
35 3e61_A Putative transcriptiona 95.0 0.74 2.5E-05 41.5 15.3 156 159-329 57-246 (277)
36 2jfz_A Glutamate racemase; cel 94.9 0.094 3.2E-06 48.7 9.0 107 81-206 107-221 (255)
37 3o74_A Fructose transport syst 94.9 0.4 1.4E-05 43.0 13.1 159 159-328 51-247 (272)
38 2rgy_A Transcriptional regulat 94.8 0.96 3.3E-05 41.3 15.8 158 159-328 60-257 (290)
39 3egc_A Putative ribose operon 94.6 2.5 8.5E-05 38.3 19.8 159 159-328 57-254 (291)
40 3jy6_A Transcriptional regulat 94.5 0.55 1.9E-05 42.5 13.1 210 80-329 5-250 (276)
41 2oho_A Glutamate racemase; iso 94.4 0.11 3.6E-06 48.9 8.1 107 81-205 117-225 (273)
42 1b73_A Glutamate racemase; iso 94.1 0.036 1.2E-06 51.5 4.2 106 81-206 105-211 (254)
43 2dgd_A 223AA long hypothetical 94.0 0.12 4.1E-06 46.7 7.4 52 155-206 158-213 (223)
44 3uhf_A Glutamate racemase; str 93.9 0.14 4.9E-06 48.4 8.0 106 81-206 131-238 (274)
45 2eq5_A 228AA long hypothetical 93.9 0.078 2.7E-06 47.9 5.9 56 151-206 159-216 (228)
46 2fep_A Catabolite control prot 93.8 2.9 0.0001 38.0 16.6 158 159-328 65-263 (289)
47 1qpz_A PURA, protein (purine n 93.6 2.4 8.3E-05 39.6 16.1 159 159-328 107-306 (340)
48 2zsk_A PH1733, 226AA long hypo 93.6 0.1 3.4E-06 47.4 6.1 57 268-324 55-112 (226)
49 3ixl_A Amdase, arylmalonate de 93.6 0.34 1.2E-05 44.7 9.7 52 155-206 167-222 (240)
50 3dbi_A Sugar-binding transcrip 93.4 2.9 0.0001 38.9 16.3 160 159-328 112-310 (338)
51 3kke_A LACI family transcripti 93.4 1.6 5.4E-05 40.1 14.2 158 159-328 64-265 (303)
52 3h5o_A Transcriptional regulat 93.4 4.1 0.00014 38.0 17.2 160 159-329 111-308 (339)
53 1jfl_A Aspartate racemase; alp 93.3 0.11 3.9E-06 47.1 5.9 58 268-325 56-114 (228)
54 3k9c_A Transcriptional regulat 93.3 2.2 7.6E-05 38.8 14.9 157 160-328 60-253 (289)
55 3g1w_A Sugar ABC transporter; 93.2 4.5 0.00016 36.7 17.0 161 159-329 54-257 (305)
56 2xed_A Putative maleate isomer 93.2 0.18 6.2E-06 47.4 7.4 52 155-206 196-250 (273)
57 2jfn_A Glutamate racemase; cel 93.1 0.23 7.9E-06 46.9 8.0 53 154-206 182-238 (285)
58 3qk7_A Transcriptional regulat 93.1 2.4 8.1E-05 38.7 14.8 157 160-328 59-256 (294)
59 3l49_A ABC sugar (ribose) tran 93.1 4.8 0.00016 36.2 16.9 160 159-328 54-261 (291)
60 1dbq_A Purine repressor; trans 92.9 3.2 0.00011 37.3 15.3 159 159-328 56-255 (289)
61 2qu7_A Putative transcriptiona 92.9 0.93 3.2E-05 41.1 11.6 155 159-328 56-255 (288)
62 3lft_A Uncharacterized protein 92.9 1.1 3.6E-05 41.3 12.1 78 158-245 54-166 (295)
63 3bbl_A Regulatory protein of L 92.7 4.2 0.00014 36.8 15.9 157 160-328 58-256 (287)
64 3jvd_A Transcriptional regulat 92.6 1.3 4.4E-05 41.6 12.5 155 159-329 112-300 (333)
65 3ipc_A ABC transporter, substr 92.5 1.3 4.4E-05 41.4 12.3 79 159-245 62-170 (356)
66 3vav_A 3-methyl-2-oxobutanoate 92.2 0.18 6.2E-06 47.8 5.9 45 151-196 171-215 (275)
67 3kjx_A Transcriptional regulat 92.0 4.7 0.00016 37.6 15.6 159 159-328 117-315 (344)
68 3clk_A Transcription regulator 91.7 6.8 0.00023 35.3 15.9 158 160-329 59-254 (290)
69 3brq_A HTH-type transcriptiona 91.7 5.8 0.0002 35.6 15.4 160 159-329 70-269 (296)
70 3l6u_A ABC-type sugar transpor 91.6 7.4 0.00025 34.9 16.7 166 159-329 57-264 (293)
71 3h5t_A Transcriptional regulat 91.5 1.9 6.5E-05 40.8 12.4 158 159-329 121-335 (366)
72 2o20_A Catabolite control prot 91.5 7.4 0.00025 36.1 16.4 157 160-329 113-308 (332)
73 2q5c_A NTRC family transcripti 91.3 1 3.5E-05 40.1 9.5 135 158-328 44-182 (196)
74 3i09_A Periplasmic branched-ch 91.2 1.7 5.7E-05 41.1 11.6 79 160-246 64-173 (375)
75 3snr_A Extracellular ligand-bi 91.2 1.8 6.2E-05 40.1 11.6 80 159-246 61-168 (362)
76 3gbv_A Putative LACI-family tr 90.9 0.98 3.3E-05 41.0 9.3 161 159-328 62-267 (304)
77 3tb6_A Arabinose metabolism tr 90.9 7.4 0.00025 34.9 15.3 160 159-328 64-269 (298)
78 3n0w_A ABC branched chain amin 90.8 1.8 6E-05 41.0 11.3 79 160-246 66-175 (379)
79 1xg4_A Probable methylisocitra 90.8 0.27 9.2E-06 47.0 5.4 55 155-209 169-230 (295)
80 3k4h_A Putative transcriptiona 90.7 6.7 0.00023 35.2 14.8 160 158-328 61-260 (292)
81 4eyg_A Twin-arginine transloca 90.6 2.3 7.8E-05 39.8 11.8 79 160-246 65-172 (368)
82 3gyb_A Transcriptional regulat 90.6 3.7 0.00013 36.8 12.9 155 160-328 54-244 (280)
83 3bil_A Probable LACI-family tr 90.5 11 0.00039 35.2 17.0 159 160-329 116-310 (348)
84 3sg0_A Extracellular ligand-bi 90.4 2.5 8.4E-05 39.7 11.9 79 159-245 81-191 (386)
85 3ksm_A ABC-type sugar transpor 90.3 2.7 9.4E-05 37.4 11.7 161 159-329 51-257 (276)
86 4fe7_A Xylose operon regulator 90.3 4 0.00014 39.5 13.6 158 160-328 70-272 (412)
87 3td9_A Branched chain amino ac 90.2 9.7 0.00033 35.5 15.9 79 160-246 74-183 (366)
88 3hut_A Putative branched-chain 90.0 1.8 6.1E-05 40.4 10.5 78 160-245 65-171 (358)
89 3lkb_A Probable branched-chain 89.9 2.4 8.3E-05 40.2 11.5 79 159-246 67-176 (392)
90 3e3m_A Transcriptional regulat 89.8 9.3 0.00032 35.8 15.5 160 159-329 119-319 (355)
91 3d8u_A PURR transcriptional re 89.8 7.5 0.00026 34.5 14.2 159 159-329 52-250 (275)
92 1byk_A Protein (trehalose oper 89.8 2.4 8.1E-05 37.6 10.7 158 159-329 51-238 (255)
93 3i45_A Twin-arginine transloca 89.8 1.9 6.6E-05 40.9 10.7 112 160-297 66-210 (387)
94 1m3u_A 3-methyl-2-oxobutanoate 89.7 0.45 1.6E-05 44.8 5.9 44 152-196 160-203 (264)
95 2h0a_A TTHA0807, transcription 89.7 2.4 8.2E-05 37.9 10.7 155 160-328 49-246 (276)
96 3miz_A Putative transcriptiona 89.7 2.8 9.5E-05 38.3 11.3 160 159-328 63-266 (301)
97 3s81_A Putative aspartate race 89.6 0.5 1.7E-05 44.4 6.1 55 152-206 195-249 (268)
98 3b8i_A PA4872 oxaloacetate dec 89.3 0.4 1.4E-05 45.7 5.2 54 155-209 170-229 (287)
99 3brs_A Periplasmic binding pro 89.3 11 0.00038 33.6 15.0 160 159-328 58-259 (289)
100 3eaf_A ABC transporter, substr 89.3 2 6.7E-05 41.0 10.3 78 160-246 69-175 (391)
101 1o66_A 3-methyl-2-oxobutanoate 89.2 0.46 1.6E-05 45.0 5.5 43 153-196 161-203 (275)
102 3huu_A Transcription regulator 88.9 5.3 0.00018 36.5 12.6 157 159-328 76-270 (305)
103 1jye_A Lactose operon represso 88.8 15 0.00052 34.3 17.5 158 160-328 112-306 (349)
104 3ih1_A Methylisocitrate lyase; 88.7 0.87 3E-05 43.7 7.2 55 155-209 177-238 (305)
105 1zlp_A PSR132, petal death pro 88.5 0.56 1.9E-05 45.3 5.7 57 153-209 189-252 (318)
106 1oy0_A Ketopantoate hydroxymet 88.4 0.53 1.8E-05 44.7 5.4 43 153-196 179-221 (281)
107 3lye_A Oxaloacetate acetyl hyd 88.2 1.2 4E-05 42.8 7.8 107 82-209 128-242 (307)
108 4evq_A Putative ABC transporte 88.1 1.7 5.7E-05 40.8 8.8 78 160-245 75-183 (375)
109 2hjp_A Phosphonopyruvate hydro 88.0 0.64 2.2E-05 44.3 5.7 105 82-208 115-229 (290)
110 2hsg_A Glucose-resistance amyl 87.9 8.5 0.00029 35.6 13.5 158 160-329 110-308 (332)
111 3eoo_A Methylisocitrate lyase; 87.9 1.4 4.8E-05 42.1 8.0 105 82-209 123-234 (298)
112 3g85_A Transcriptional regulat 87.4 4.6 0.00016 36.4 11.0 157 162-329 64-259 (289)
113 3rot_A ABC sugar transporter, 87.0 4.5 0.00015 36.8 10.9 82 159-247 54-166 (297)
114 3cs3_A Sugar-binding transcrip 86.3 16 0.00056 32.5 14.1 122 196-328 106-245 (277)
115 4f11_A Gamma-aminobutyric acid 86.2 9.4 0.00032 36.7 13.2 43 196-246 142-187 (433)
116 1pea_A Amidase operon; gene re 86.2 4.3 0.00015 38.5 10.6 78 159-245 67-172 (385)
117 3m9w_A D-xylose-binding peripl 86.1 11 0.00037 34.4 13.0 160 159-328 51-257 (313)
118 3lop_A Substrate binding perip 85.7 6.6 0.00022 36.7 11.5 78 160-245 66-173 (364)
119 2fvy_A D-galactose-binding per 85.5 20 0.00069 32.2 14.5 162 159-328 52-271 (309)
120 2iks_A DNA-binding transcripti 85.2 8.6 0.00029 34.7 11.7 158 159-328 69-265 (293)
121 3o1i_D Periplasmic protein TOR 85.1 6.3 0.00022 35.6 10.8 163 159-328 56-262 (304)
122 2pju_A Propionate catabolism o 84.9 6.5 0.00022 35.8 10.6 131 162-328 59-193 (225)
123 3hs3_A Ribose operon repressor 84.8 15 0.0005 32.9 13.1 153 159-329 60-247 (277)
124 1jx6_A LUXP protein; protein-l 84.7 11 0.00037 34.9 12.4 160 160-329 98-303 (342)
125 1usg_A Leucine-specific bindin 83.7 8 0.00028 35.5 11.0 40 198-245 127-170 (346)
126 2qiw_A PEP phosphonomutase; st 83.2 1.6 5.4E-05 40.7 5.7 38 155-192 170-207 (255)
127 3hsy_A Glutamate receptor 2; l 83.2 8.3 0.00029 36.5 11.1 78 160-246 54-153 (376)
128 2x7x_A Sensor protein; transfe 82.6 8.4 0.00029 35.6 10.7 126 81-245 5-163 (325)
129 3o21_A Glutamate receptor 3; p 82.2 13 0.00045 35.4 12.2 78 160-246 63-162 (389)
130 3h5l_A Putative branched-chain 81.8 11 0.00036 36.1 11.4 61 217-295 165-228 (419)
131 3fa4_A 2,3-dimethylmalate lyas 81.4 3 0.0001 39.9 7.0 107 82-209 120-234 (302)
132 2ioy_A Periplasmic sugar-bindi 80.9 17 0.00057 32.6 11.8 159 160-328 51-251 (283)
133 4gpa_A Glutamate receptor 4; P 80.5 26 0.00088 32.5 13.4 78 161-246 64-162 (389)
134 8abp_A L-arabinose-binding pro 80.2 17 0.00057 32.8 11.6 165 159-328 50-269 (306)
135 3tdn_A FLR symmetric alpha-bet 79.6 5.8 0.0002 35.9 8.1 81 156-245 38-130 (247)
136 2dri_A D-ribose-binding protei 79.5 20 0.00067 31.9 11.7 161 160-328 51-250 (271)
137 3qek_A NMDA glutamate receptor 78.9 11 0.00039 35.5 10.4 79 157-243 56-169 (384)
138 2fn9_A Ribose ABC transporter, 77.2 36 0.0012 30.3 12.8 159 160-328 52-260 (290)
139 2rjo_A Twin-arginine transloca 76.3 22 0.00074 32.7 11.3 159 160-328 55-266 (332)
140 2h3h_A Sugar ABC transporter, 76.2 15 0.00052 33.4 10.1 78 159-245 50-157 (313)
141 3saj_A Glutamate receptor 1; r 76.1 8.3 0.00028 36.6 8.5 80 158-246 59-160 (384)
142 2ze3_A DFA0005; organic waste 74.5 2.7 9.1E-05 39.6 4.4 53 155-208 170-226 (275)
143 3kg2_A Glutamate receptor 2; I 73.3 67 0.0023 33.5 15.4 80 158-246 52-153 (823)
144 3r7f_A Aspartate carbamoyltran 72.7 16 0.00056 34.8 9.4 87 155-249 81-181 (304)
145 4f06_A Extracellular ligand-bi 72.2 25 0.00085 33.0 10.8 80 159-246 64-172 (371)
146 3gr7_A NADPH dehydrogenase; fl 72.1 14 0.00049 35.4 9.1 85 155-247 231-331 (340)
147 3hgj_A Chromate reductase; TIM 67.9 18 0.00062 34.7 8.8 85 155-247 241-342 (349)
148 2h4a_A YRAM (HI1655); perplasm 67.7 58 0.002 30.6 12.2 79 159-245 49-154 (325)
149 3h6g_A Glutamate receptor, ion 67.5 28 0.00095 32.8 10.0 76 162-246 67-170 (395)
150 3eag_A UDP-N-acetylmuramate:L- 67.5 6.6 0.00023 37.2 5.5 70 165-244 65-137 (326)
151 4fb5_A Probable oxidoreductase 66.8 6.3 0.00021 37.4 5.2 109 73-199 14-134 (393)
152 3tsm_A IGPS, indole-3-glycerol 66.6 26 0.0009 32.7 9.3 83 156-246 82-174 (272)
153 1s2w_A Phosphoenolpyruvate pho 65.4 7.2 0.00024 37.0 5.2 55 155-209 172-233 (295)
154 3oow_A Phosphoribosylaminoimid 65.1 13 0.00043 32.5 6.3 86 81-195 3-89 (166)
155 1vli_A Spore coat polysacchari 64.9 75 0.0026 31.2 12.5 188 155-362 46-275 (385)
156 1tjy_A Sugar transport protein 64.7 79 0.0027 28.7 12.3 160 159-328 53-257 (316)
157 3lk7_A UDP-N-acetylmuramoylala 64.3 28 0.00097 34.3 9.6 68 167-246 73-143 (451)
158 4had_A Probable oxidoreductase 62.9 6.6 0.00023 37.1 4.5 118 67-207 8-137 (350)
159 3q58_A N-acetylmannosamine-6-p 62.2 32 0.0011 31.0 8.8 38 155-195 38-75 (229)
160 3uug_A Multiple sugar-binding 62.0 83 0.0028 28.4 11.9 72 160-240 53-160 (330)
161 4b4k_A N5-carboxyaminoimidazol 61.9 19 0.00064 31.8 6.8 82 84-195 24-106 (181)
162 3qel_B Glutamate [NMDA] recept 61.6 46 0.0016 31.5 10.3 77 155-240 52-159 (364)
163 3ckm_A YRAM (HI1655), LPOA; pe 61.4 56 0.0019 30.0 10.7 79 160-246 52-157 (327)
164 2fqx_A Membrane lipoprotein TM 60.0 1.1E+02 0.0036 28.2 13.9 79 159-244 55-161 (318)
165 3om0_A Glutamate receptor, ion 59.9 48 0.0017 31.1 10.1 77 160-245 64-170 (393)
166 3sm9_A Mglur3, metabotropic gl 59.4 61 0.0021 31.9 11.1 42 197-246 174-218 (479)
167 3lkv_A Uncharacterized conserv 59.2 1.1E+02 0.0036 28.0 14.0 86 155-248 58-176 (302)
168 3igs_A N-acetylmannosamine-6-p 58.2 35 0.0012 30.8 8.3 37 155-194 38-74 (232)
169 1qop_A Tryptophan synthase alp 57.7 47 0.0016 30.4 9.3 19 156-174 34-52 (268)
170 3vnd_A TSA, tryptophan synthas 57.6 52 0.0018 30.5 9.5 16 110-125 16-31 (267)
171 3trh_A Phosphoribosylaminoimid 56.8 30 0.001 30.2 7.2 82 84-195 8-90 (169)
172 3lp6_A Phosphoribosylaminoimid 56.2 32 0.0011 30.2 7.3 83 83-195 8-91 (174)
173 3p9x_A Phosphoribosylglycinami 55.5 49 0.0017 29.7 8.7 104 82-195 2-109 (211)
174 1u11_A PURE (N5-carboxyaminoim 55.4 21 0.00073 31.5 6.0 84 82-195 21-105 (182)
175 4hv4_A UDP-N-acetylmuramate--L 55.4 34 0.0012 34.3 8.5 67 166-243 81-150 (494)
176 3nav_A Tryptophan synthase alp 55.2 46 0.0016 31.0 8.8 55 181-245 88-154 (271)
177 3noy_A 4-hydroxy-3-methylbut-2 54.9 16 0.00054 35.8 5.6 39 155-193 48-88 (366)
178 3kuu_A Phosphoribosylaminoimid 54.0 26 0.0009 30.7 6.3 82 84-195 14-96 (174)
179 1z41_A YQJM, probable NADH-dep 53.8 44 0.0015 31.8 8.6 84 155-247 231-331 (338)
180 1dp4_A Atrial natriuretic pept 53.5 76 0.0026 30.0 10.4 41 198-246 136-185 (435)
181 3n0v_A Formyltetrahydrofolate 51.6 58 0.002 30.5 8.9 103 82-195 90-194 (286)
182 2vk2_A YTFQ, ABC transporter p 51.3 58 0.002 29.3 8.8 77 160-242 52-159 (306)
183 3l5l_A Xenobiotic reductase A; 51.3 40 0.0014 32.4 8.0 81 154-242 247-344 (363)
184 1h7n_A 5-aminolaevulinic acid 50.4 90 0.0031 30.1 9.9 108 149-292 155-262 (342)
185 1gud_A ALBP, D-allose-binding 50.4 61 0.0021 28.9 8.7 159 160-328 53-262 (288)
186 3o1l_A Formyltetrahydrofolate 50.2 46 0.0016 31.5 8.0 104 81-195 104-209 (302)
187 2ekc_A AQ_1548, tryptophan syn 50.2 86 0.0029 28.6 9.7 19 156-174 34-52 (262)
188 3ctp_A Periplasmic binding pro 49.6 54 0.0019 30.0 8.4 155 159-328 109-299 (330)
189 3ks9_A Mglur1, metabotropic gl 49.5 1.1E+02 0.0037 30.3 11.0 75 164-246 126-230 (496)
190 3tpf_A Otcase, ornithine carba 49.4 62 0.0021 30.7 8.7 89 155-250 81-179 (307)
191 3lou_A Formyltetrahydrofolate 49.4 65 0.0022 30.3 8.8 104 81-195 94-199 (292)
192 1jvn_A Glutamine, bifunctional 48.9 20 0.00068 36.8 5.6 87 155-250 282-407 (555)
193 3qja_A IGPS, indole-3-glycerol 48.7 66 0.0023 29.8 8.7 54 156-209 75-137 (272)
194 3grf_A Ornithine carbamoyltran 48.3 44 0.0015 32.1 7.5 93 155-249 90-194 (328)
195 1w5q_A Delta-aminolevulinic ac 48.1 1.1E+02 0.0037 29.5 10.0 107 149-292 151-259 (337)
196 4a8t_A Putrescine carbamoyltra 47.6 1.2E+02 0.0042 29.0 10.7 92 155-250 108-208 (339)
197 3jvd_A Transcriptional regulat 47.4 54 0.0018 30.2 8.0 58 216-295 64-128 (333)
198 3ors_A N5-carboxyaminoimidazol 47.3 35 0.0012 29.6 6.0 82 84-195 5-87 (163)
199 4grd_A N5-CAIR mutase, phospho 46.6 49 0.0017 28.9 6.9 83 83-195 13-96 (173)
200 3dah_A Ribose-phosphate pyroph 46.6 50 0.0017 31.5 7.7 156 158-327 117-308 (319)
201 3gd5_A Otcase, ornithine carba 46.3 58 0.002 31.2 8.0 88 155-250 93-190 (323)
202 3nrb_A Formyltetrahydrofolate 46.2 32 0.0011 32.3 6.1 103 81-195 87-193 (287)
203 3av3_A Phosphoribosylglycinami 45.7 84 0.0029 27.8 8.6 104 82-195 3-110 (212)
204 2wqp_A Polysialic acid capsule 45.5 87 0.003 30.3 9.2 189 155-363 37-264 (349)
205 3nvt_A 3-deoxy-D-arabino-heptu 45.5 2.2E+02 0.0076 27.7 18.8 83 89-176 88-179 (385)
206 1w1z_A Delta-aminolevulinic ac 45.3 91 0.0031 29.9 9.0 107 149-292 146-252 (328)
207 1vc4_A Indole-3-glycerol phosp 44.9 82 0.0028 28.7 8.6 79 156-245 68-158 (254)
208 4ep1_A Otcase, ornithine carba 44.3 69 0.0024 30.9 8.2 88 155-250 115-212 (340)
209 1xmp_A PURE, phosphoribosylami 44.0 45 0.0015 29.1 6.2 83 83-195 12-95 (170)
210 1l6s_A Porphobilinogen synthas 43.9 1E+02 0.0035 29.4 9.2 106 149-292 140-245 (323)
211 4h31_A Otcase, ornithine carba 43.4 1.4E+02 0.0046 28.9 10.3 89 155-250 115-215 (358)
212 4g9p_A 4-hydroxy-3-methylbut-2 43.1 31 0.001 34.2 5.6 37 158-194 43-86 (406)
213 2e4u_A Metabotropic glutamate 42.8 1.7E+02 0.0059 29.0 11.5 42 197-246 175-219 (555)
214 1vzw_A Phosphoribosyl isomeras 42.6 80 0.0027 27.9 8.1 78 157-243 36-124 (244)
215 3ado_A Lambda-crystallin; L-gu 42.5 38 0.0013 32.2 6.1 33 216-250 6-38 (319)
216 1gvf_A Tagatose-bisphosphate a 42.5 33 0.0011 32.3 5.6 52 158-209 160-227 (286)
217 1pv8_A Delta-aminolevulinic ac 42.4 1.2E+02 0.0039 29.2 9.3 108 149-292 144-251 (330)
218 3kwl_A Uncharacterized protein 42.4 22 0.00076 36.2 4.7 52 152-203 434-494 (514)
219 4hf7_A Putative acylhydrolase; 42.4 83 0.0028 26.8 7.9 69 90-173 57-125 (209)
220 4a8p_A Putrescine carbamoyltra 41.9 1.3E+02 0.0046 29.0 9.9 91 155-250 86-186 (355)
221 3s99_A Basic membrane lipoprot 41.5 90 0.0031 29.9 8.7 30 78-107 145-174 (356)
222 3p94_A GDSL-like lipase; serin 41.4 65 0.0022 26.7 7.0 70 90-174 53-122 (204)
223 1thf_D HISF protein; thermophI 41.3 1.2E+02 0.0041 26.8 9.1 77 157-243 34-123 (253)
224 2y88_A Phosphoribosyl isomeras 41.1 87 0.003 27.5 8.1 78 157-243 35-123 (244)
225 3dbi_A Sugar-binding transcrip 40.9 72 0.0025 29.2 7.7 63 215-296 60-129 (338)
226 3miz_A Putative transcriptiona 40.9 84 0.0029 28.0 8.1 62 216-296 13-80 (301)
227 3qi7_A Putative transcriptiona 40.6 1E+02 0.0034 30.1 8.8 77 159-245 104-192 (371)
228 3q94_A Fructose-bisphosphate a 40.3 31 0.0011 32.5 5.0 52 158-209 164-231 (288)
229 3kcq_A Phosphoribosylglycinami 40.3 64 0.0022 28.9 6.9 101 80-195 6-110 (215)
230 3obi_A Formyltetrahydrofolate 40.2 52 0.0018 30.9 6.6 104 81-195 88-194 (288)
231 1h5y_A HISF; histidine biosynt 40.1 92 0.0031 27.1 8.0 79 156-243 36-126 (253)
232 4exq_A UPD, URO-D, uroporphyri 40.0 1.9E+02 0.0064 27.7 10.8 166 84-295 151-338 (368)
233 1nvm_A HOA, 4-hydroxy-2-oxoval 38.8 2E+02 0.0069 27.1 10.7 18 155-172 32-49 (345)
234 1geq_A Tryptophan synthase alp 38.7 1.5E+02 0.0052 26.1 9.3 17 156-173 22-38 (248)
235 1vim_A Hypothetical protein AF 38.4 46 0.0016 28.7 5.6 82 77-179 42-129 (200)
236 1qo2_A Molecule: N-((5-phospho 37.9 36 0.0012 30.3 4.9 74 156-241 33-119 (241)
237 4dnh_A Uncharacterized protein 37.9 1.6E+02 0.0054 28.6 9.4 45 149-193 133-187 (396)
238 1zq6_A Otcase, ornithine carba 37.6 1E+02 0.0034 30.0 8.3 92 155-250 115-229 (359)
239 1o4v_A Phosphoribosylaminoimid 37.5 51 0.0017 29.1 5.6 84 83-196 14-98 (183)
240 1f76_A Dihydroorotate dehydrog 36.7 88 0.003 29.3 7.7 22 155-176 227-248 (336)
241 3rg8_A Phosphoribosylaminoimid 36.6 1.1E+02 0.0039 26.2 7.6 83 84-195 4-87 (159)
242 1dxh_A Ornithine carbamoyltran 36.5 2.2E+02 0.0076 27.2 10.5 90 155-251 90-190 (335)
243 3bfj_A 1,3-propanediol oxidore 36.2 57 0.0019 31.4 6.3 45 196-248 21-70 (387)
244 1vlv_A Otcase, ornithine carba 35.9 2.2E+02 0.0074 27.1 10.3 90 155-251 103-202 (325)
245 3g8r_A Probable spore coat pol 35.7 2.2E+02 0.0074 27.5 10.3 135 219-362 92-251 (350)
246 2i6u_A Otcase, ornithine carba 35.6 2.4E+02 0.0082 26.6 10.5 88 155-251 84-183 (307)
247 4amu_A Ornithine carbamoyltran 35.6 2.3E+02 0.0077 27.5 10.5 89 155-250 116-214 (365)
248 2ef0_A Ornithine carbamoyltran 35.6 2E+02 0.007 27.0 9.9 88 155-250 90-187 (301)
249 4ekn_B Aspartate carbamoyltran 35.5 1.8E+02 0.0061 27.5 9.5 89 155-250 86-187 (306)
250 1rrm_A Lactaldehyde reductase; 35.5 55 0.0019 31.5 6.1 45 196-248 19-66 (386)
251 1rvg_A Fructose-1,6-bisphospha 35.4 27 0.00093 33.3 3.7 50 159-208 159-226 (305)
252 1pvv_A Otcase, ornithine carba 35.2 2.2E+02 0.0076 26.9 10.2 89 155-251 91-189 (315)
253 3obb_A Probable 3-hydroxyisobu 35.1 2.7E+02 0.0093 25.6 11.5 28 218-245 91-119 (300)
254 1rd5_A Tryptophan synthase alp 35.1 1.2E+02 0.0041 27.2 8.1 19 155-173 34-52 (262)
255 1zjj_A Hypothetical protein PH 34.7 2.1E+02 0.0072 25.0 9.6 77 156-246 23-107 (263)
256 1ypf_A GMP reductase; GUAC, pu 34.7 1.1E+02 0.0039 28.8 8.2 61 157-227 161-243 (336)
257 1ivn_A Thioesterase I; hydrola 34.6 1E+02 0.0035 25.4 7.1 68 89-174 40-107 (190)
258 1h5y_A HISF; histidine biosynt 34.4 1.3E+02 0.0044 26.1 8.0 77 159-244 160-251 (253)
259 3mil_A Isoamyl acetate-hydroly 34.0 1.5E+02 0.005 25.1 8.2 76 85-174 44-121 (240)
260 1zco_A 2-dehydro-3-deoxyphosph 33.9 2.8E+02 0.0094 25.3 13.2 22 155-176 39-60 (262)
261 1ujp_A Tryptophan synthase alp 33.6 1.3E+02 0.0044 27.7 8.1 54 181-244 83-147 (271)
262 3ox4_A Alcohol dehydrogenase 2 33.5 31 0.0011 33.5 3.9 31 217-247 32-65 (383)
263 1qpz_A PURA, protein (purine n 33.4 1.9E+02 0.0066 26.2 9.4 61 215-296 57-124 (340)
264 3csu_A Protein (aspartate carb 33.3 1.3E+02 0.0046 28.4 8.3 88 155-251 88-191 (310)
265 3obk_A Delta-aminolevulinic ac 33.2 1.9E+02 0.0065 28.0 9.2 108 149-292 159-266 (356)
266 1ka9_F Imidazole glycerol phos 32.8 1.5E+02 0.0052 26.1 8.3 79 156-243 34-124 (252)
267 3rjt_A Lipolytic protein G-D-S 32.7 1.7E+02 0.0058 24.1 8.2 81 85-173 56-137 (216)
268 2w37_A Ornithine carbamoyltran 32.7 3E+02 0.01 26.6 10.8 88 155-251 112-211 (359)
269 1ep3_A Dihydroorotate dehydrog 32.2 1.7E+02 0.0057 26.7 8.7 17 157-173 180-196 (311)
270 4ds3_A Phosphoribosylglycinami 32.0 1.9E+02 0.0064 25.7 8.6 103 83-195 8-114 (209)
271 1eep_A Inosine 5'-monophosphat 32.0 1.1E+02 0.0038 29.6 7.7 16 157-172 206-221 (404)
272 4dgk_A Phytoene dehydrogenase; 31.8 14 0.00049 36.2 1.2 21 82-102 1-22 (501)
273 1m3s_A Hypothetical protein YC 31.8 65 0.0022 27.0 5.3 82 77-180 32-120 (186)
274 3auf_A Glycinamide ribonucleot 31.8 1.8E+02 0.0062 26.1 8.6 104 82-195 22-129 (229)
275 2ftp_A Hydroxymethylglutaryl-C 31.7 3.1E+02 0.011 25.3 12.3 24 273-296 159-182 (302)
276 3egc_A Putative ribose operon 31.6 1.2E+02 0.0042 26.7 7.5 61 215-296 7-74 (291)
277 3flu_A DHDPS, dihydrodipicolin 31.6 1.6E+02 0.0055 27.3 8.5 86 155-249 30-141 (297)
278 3hp4_A GDSL-esterase; psychrot 31.5 1.3E+02 0.0045 24.4 7.2 73 84-174 38-111 (185)
279 1p3d_A UDP-N-acetylmuramate--a 30.7 1E+02 0.0035 30.4 7.3 68 165-243 76-146 (475)
280 3brs_A Periplasmic binding pro 30.7 1.3E+02 0.0044 26.4 7.4 20 278-297 57-76 (289)
281 4djd_D C/Fe-SP, corrinoid/iron 30.5 2.4E+02 0.0082 26.8 9.5 111 159-298 86-219 (323)
282 1j6u_A UDP-N-acetylmuramate-al 30.5 1.8E+02 0.0061 28.6 9.1 70 166-244 71-143 (469)
283 3h75_A Periplasmic sugar-bindi 30.4 3.1E+02 0.011 24.9 12.4 102 197-300 127-246 (350)
284 4ay7_A Methylcobalamin\: coenz 30.3 3.4E+02 0.012 25.3 14.4 28 151-178 188-215 (348)
285 3lq1_A 2-succinyl-5-enolpyruvy 30.2 89 0.003 31.7 6.9 89 155-246 14-105 (578)
286 3o9z_A Lipopolysaccaride biosy 29.6 1.3E+02 0.0045 27.8 7.6 45 163-207 69-123 (312)
287 2qjg_A Putative aldolase MJ040 29.5 3E+02 0.01 24.5 10.0 107 159-293 105-237 (273)
288 1o5k_A DHDPS, dihydrodipicolin 29.4 1E+02 0.0036 28.8 6.8 37 157-193 98-142 (306)
289 1xky_A Dihydrodipicolinate syn 29.4 1.8E+02 0.0062 27.0 8.5 26 155-180 35-60 (301)
290 1xky_A Dihydrodipicolinate syn 29.3 1.2E+02 0.004 28.3 7.1 37 157-193 98-142 (301)
291 3l21_A DHDPS, dihydrodipicolin 29.0 1.6E+02 0.0055 27.4 8.0 26 155-180 38-63 (304)
292 3k30_A Histamine dehydrogenase 28.8 4.9E+02 0.017 26.7 13.3 23 81-103 390-413 (690)
293 1vlj_A NADH-dependent butanol 28.8 1.2E+02 0.0042 29.4 7.4 45 196-248 31-79 (407)
294 3lzd_A DPH2; diphthamide biosy 28.5 1.6E+02 0.0054 28.8 8.0 94 151-249 66-186 (378)
295 1jdp_A NPR-C, atrial natriuret 28.2 2.4E+02 0.0084 26.6 9.4 42 197-246 143-190 (441)
296 3tak_A DHDPS, dihydrodipicolin 28.1 1.8E+02 0.0061 26.8 8.1 86 155-249 24-135 (291)
297 1vyr_A Pentaerythritol tetrani 28.0 2.2E+02 0.0075 27.2 9.0 40 155-194 253-299 (364)
298 1twd_A Copper homeostasis prot 28.0 1.1E+02 0.0037 28.4 6.4 81 161-247 16-121 (256)
299 3huu_A Transcription regulator 27.9 1.5E+02 0.0051 26.4 7.4 62 216-296 22-93 (305)
300 3cpr_A Dihydrodipicolinate syn 27.9 1.1E+02 0.0036 28.7 6.5 37 157-193 102-146 (304)
301 2r8w_A AGR_C_1641P; APC7498, d 27.8 91 0.0031 29.6 6.1 37 157-193 120-164 (332)
302 2eja_A URO-D, UPD, uroporphyri 27.8 71 0.0024 30.0 5.3 83 150-249 176-260 (338)
303 3s5o_A 4-hydroxy-2-oxoglutarat 27.7 1.2E+02 0.004 28.4 6.8 83 85-193 52-146 (307)
304 3daq_A DHDPS, dihydrodipicolin 27.3 1.7E+02 0.0057 27.1 7.8 26 155-180 25-50 (292)
305 2v9d_A YAGE; dihydrodipicolini 27.2 1.2E+02 0.0043 28.8 7.0 37 157-193 117-161 (343)
306 4f2g_A Otcase 1, ornithine car 27.2 68 0.0023 30.5 5.0 88 155-250 90-187 (309)
307 3qze_A DHDPS, dihydrodipicolin 26.9 1.8E+02 0.0061 27.3 8.0 86 155-249 46-157 (314)
308 2gou_A Oxidoreductase, FMN-bin 26.9 73 0.0025 30.7 5.3 40 155-194 252-298 (365)
309 3tak_A DHDPS, dihydrodipicolin 26.8 1.3E+02 0.0044 27.8 6.9 37 157-193 87-131 (291)
310 3b4u_A Dihydrodipicolinate syn 26.8 1.2E+02 0.004 28.2 6.6 37 157-193 89-137 (294)
311 3na8_A Putative dihydrodipicol 26.8 1.5E+02 0.0053 27.7 7.5 26 155-180 47-72 (315)
312 2w6r_A Imidazole glycerol phos 26.8 1.5E+02 0.0053 26.3 7.3 75 157-241 34-124 (266)
313 3i65_A Dihydroorotate dehydrog 26.8 2.2E+02 0.0075 28.1 8.8 22 155-177 285-306 (415)
314 1thf_D HISF protein; thermophI 26.6 3.1E+02 0.01 24.0 9.2 78 158-245 156-249 (253)
315 1mzh_A Deoxyribose-phosphate a 26.5 1.2E+02 0.0042 26.8 6.5 20 155-176 134-153 (225)
316 3a5f_A Dihydrodipicolinate syn 26.5 1.9E+02 0.0066 26.6 8.1 25 155-179 24-48 (291)
317 2wkj_A N-acetylneuraminate lya 26.3 1.9E+02 0.0066 26.8 8.1 26 155-180 34-59 (303)
318 2f00_A UDP-N-acetylmuramate--L 26.3 1.1E+02 0.0039 30.3 6.8 68 165-243 77-147 (491)
319 4h3v_A Oxidoreductase domain p 26.3 34 0.0012 32.1 2.7 38 162-199 71-115 (390)
320 2r8w_A AGR_C_1641P; APC7498, d 26.1 1.9E+02 0.0066 27.3 8.1 86 155-249 57-168 (332)
321 3rxy_A NIF3 protein; structura 26.1 1.1E+02 0.0037 28.7 6.0 80 216-297 195-278 (278)
322 3m5v_A DHDPS, dihydrodipicolin 26.1 1.8E+02 0.0062 27.0 7.8 26 155-180 30-55 (301)
323 2iks_A DNA-binding transcripti 26.0 2.3E+02 0.0079 24.9 8.4 60 216-296 20-86 (293)
324 2e6f_A Dihydroorotate dehydrog 26.0 1.6E+02 0.0053 27.2 7.3 22 155-176 176-198 (314)
325 3flu_A DHDPS, dihydrodipicolin 26.0 1E+02 0.0036 28.6 6.1 37 157-193 93-137 (297)
326 3qze_A DHDPS, dihydrodipicolin 26.0 1.2E+02 0.0042 28.4 6.6 37 157-193 109-153 (314)
327 2r14_A Morphinone reductase; H 25.9 2.4E+02 0.0083 27.1 8.9 22 155-176 257-278 (377)
328 4ab4_A Xenobiotic reductase B; 25.8 1.7E+02 0.0058 28.2 7.7 74 155-236 244-321 (362)
329 3sho_A Transcriptional regulat 25.5 2.1E+02 0.0071 23.7 7.5 100 77-191 34-139 (187)
330 2eja_A URO-D, UPD, uroporphyri 25.5 90 0.0031 29.2 5.6 45 149-195 213-258 (338)
331 2yxg_A DHDPS, dihydrodipicolin 25.2 2E+02 0.007 26.4 7.9 86 155-249 23-134 (289)
332 3si9_A DHDPS, dihydrodipicolin 25.2 2E+02 0.0067 27.0 7.9 86 155-249 45-156 (315)
333 1jub_A Dihydroorotate dehydrog 25.2 2.1E+02 0.0071 26.2 8.0 77 153-239 172-288 (311)
334 3qfe_A Putative dihydrodipicol 25.0 1.6E+02 0.0056 27.6 7.3 87 155-250 34-148 (318)
335 3jy6_A Transcriptional regulat 25.0 1.1E+02 0.0036 26.9 5.7 31 215-247 6-43 (276)
336 3oa2_A WBPB; oxidoreductase, s 24.9 1.1E+02 0.0037 28.5 6.0 45 163-207 70-124 (318)
337 2ywr_A Phosphoribosylglycinami 24.8 3.5E+02 0.012 23.7 9.5 36 159-195 73-108 (216)
338 2ehh_A DHDPS, dihydrodipicolin 24.7 2.1E+02 0.007 26.4 7.9 25 155-179 23-47 (294)
339 4h3d_A 3-dehydroquinate dehydr 24.6 1.2E+02 0.0042 27.6 6.2 25 146-174 153-177 (258)
340 3fkr_A L-2-keto-3-deoxyarabona 24.6 1.9E+02 0.0064 27.0 7.6 86 155-249 31-145 (309)
341 3cpr_A Dihydrodipicolinate syn 24.5 2.2E+02 0.0075 26.4 8.1 86 155-249 39-150 (304)
342 2yvq_A Carbamoyl-phosphate syn 24.5 1.2E+02 0.0042 24.9 5.6 24 219-248 51-74 (143)
343 4dpp_A DHDPS 2, dihydrodipicol 24.4 2.3E+02 0.0079 27.3 8.3 26 155-180 82-107 (360)
344 3kc2_A Uncharacterized protein 24.4 68 0.0023 30.7 4.5 76 155-246 34-117 (352)
345 3gka_A N-ethylmaleimide reduct 24.3 2.2E+02 0.0076 27.3 8.2 75 155-237 252-330 (361)
346 1jcn_A Inosine monophosphate d 24.1 2.6E+02 0.0088 27.9 9.0 53 157-209 258-319 (514)
347 3dz1_A Dihydrodipicolinate syn 23.9 1.9E+02 0.0066 26.9 7.6 86 155-249 31-142 (313)
348 1meo_A Phosophoribosylglycinam 23.8 3.7E+02 0.013 23.5 9.1 103 83-195 1-107 (209)
349 2ojp_A DHDPS, dihydrodipicolin 23.7 1.1E+02 0.0039 28.2 5.9 37 157-193 87-131 (292)
350 2r91_A 2-keto-3-deoxy-(6-phosp 23.7 94 0.0032 28.7 5.3 37 157-193 81-126 (286)
351 3kjx_A Transcriptional regulat 23.6 3.2E+02 0.011 24.7 9.0 76 200-296 46-134 (344)
352 3hs3_A Ribose operon repressor 23.6 3.6E+02 0.012 23.4 9.5 59 215-294 9-75 (277)
353 2h31_A Multifunctional protein 23.6 2.3E+02 0.0078 28.1 8.2 84 83-196 266-351 (425)
354 2ftp_A Hydroxymethylglutaryl-C 23.4 1.7E+02 0.0058 27.1 7.0 19 155-173 161-179 (302)
355 3d6n_B Aspartate carbamoyltran 23.4 37 0.0013 32.0 2.4 88 155-250 79-181 (291)
356 1v5e_A Pyruvate oxidase; oxido 23.3 72 0.0025 32.6 4.7 75 159-236 11-87 (590)
357 3aty_A Tcoye, prostaglandin F2 23.1 3E+02 0.01 26.4 9.0 39 155-194 268-312 (379)
358 2v9d_A YAGE; dihydrodipicolini 23.1 2.1E+02 0.0073 27.2 7.8 86 155-249 54-165 (343)
359 4avf_A Inosine-5'-monophosphat 23.0 1.6E+02 0.0056 29.4 7.3 53 157-209 232-293 (490)
360 3ipc_A ABC transporter, substr 23.0 2.8E+02 0.0096 25.0 8.5 36 160-195 187-225 (356)
361 2vbi_A Pyruvate decarboxylase; 23.0 1.1E+02 0.0038 30.8 6.0 84 159-246 10-96 (566)
362 2rfg_A Dihydrodipicolinate syn 23.0 1.9E+02 0.0064 26.8 7.2 25 155-179 23-47 (297)
363 4gnr_A ABC transporter substra 23.0 4.2E+02 0.014 23.8 13.0 13 84-96 9-22 (353)
364 1o5k_A DHDPS, dihydrodipicolin 22.9 2.2E+02 0.0076 26.4 7.8 25 155-179 35-59 (306)
365 1ybh_A Acetolactate synthase, 22.7 69 0.0023 32.6 4.4 85 159-246 19-106 (590)
366 3nrs_A Dihydrofolate:folylpoly 22.7 5.2E+02 0.018 24.9 11.0 18 278-295 134-151 (437)
367 2x7j_A 2-succinyl-5-enolpyruvy 22.7 84 0.0029 32.1 5.1 86 158-246 37-125 (604)
368 2wvg_A PDC, pyruvate decarboxy 22.7 1.2E+02 0.004 30.7 6.1 84 159-246 10-96 (568)
369 1jkx_A GART;, phosphoribosylgl 22.5 3.6E+02 0.012 23.7 8.7 102 84-195 2-107 (212)
370 2pgn_A Cyclohexane-1,2-dione h 22.5 99 0.0034 31.4 5.6 85 159-246 11-99 (589)
371 3b0p_A TRNA-dihydrouridine syn 22.5 1E+02 0.0034 29.4 5.3 22 155-176 146-167 (350)
372 4gj1_A 1-(5-phosphoribosyl)-5- 22.4 2.1E+02 0.0073 25.6 7.3 120 158-293 36-171 (243)
373 3iwp_A Copper homeostasis prot 22.3 4.8E+02 0.017 24.3 9.9 26 153-178 111-136 (287)
374 3hcw_A Maltose operon transcri 22.3 2.5E+02 0.0087 24.7 7.8 63 215-296 6-78 (295)
375 3b4u_A Dihydrodipicolinate syn 22.2 2.1E+02 0.0072 26.4 7.4 86 155-249 26-141 (294)
376 1tv5_A Dhodehase, dihydroorota 22.0 96 0.0033 30.9 5.2 22 155-176 313-334 (443)
377 1ozh_A ALS, acetolactate synth 22.0 1.1E+02 0.0037 31.0 5.7 84 159-246 18-104 (566)
378 4huj_A Uncharacterized protein 21.9 52 0.0018 28.8 2.9 29 68-97 9-37 (220)
379 4dnh_A Uncharacterized protein 21.8 3.8E+02 0.013 25.9 8.9 82 147-246 92-188 (396)
380 2c31_A Oxalyl-COA decarboxylas 21.8 1.1E+02 0.0039 30.8 5.8 84 159-246 17-103 (568)
381 2r91_A 2-keto-3-deoxy-(6-phosp 21.7 1.8E+02 0.0061 26.7 6.8 26 155-180 21-46 (286)
382 2nx9_A Oxaloacetate decarboxyl 21.6 2.2E+02 0.0074 28.5 7.7 56 154-209 159-228 (464)
383 1f0y_A HCDH, L-3-hydroxyacyl-C 21.6 2.5E+02 0.0085 25.4 7.7 32 217-250 16-47 (302)
384 1jvn_A Glutamine, bifunctional 21.4 3.2E+02 0.011 27.6 9.2 82 157-247 456-553 (555)
385 1oth_A Protein (ornithine tran 21.4 97 0.0033 29.5 4.9 88 155-250 91-188 (321)
386 3r2g_A Inosine 5'-monophosphat 21.4 1.7E+02 0.0059 28.2 6.8 39 156-194 102-146 (361)
387 3zwt_A Dihydroorotate dehydrog 21.3 1E+02 0.0035 29.8 5.1 22 155-176 236-257 (367)
388 2ojp_A DHDPS, dihydrodipicolin 21.1 2.2E+02 0.0074 26.2 7.2 25 155-179 24-48 (292)
389 2nuw_A 2-keto-3-deoxygluconate 21.1 1E+02 0.0034 28.5 4.9 37 157-193 82-127 (288)
390 3tqr_A Phosphoribosylglycinami 21.1 3.5E+02 0.012 24.0 8.3 104 82-195 5-111 (215)
391 2vbf_A Branched-chain alpha-ke 21.0 1.1E+02 0.0037 31.0 5.4 85 159-247 32-119 (570)
392 3p9z_A Uroporphyrinogen III co 20.9 64 0.0022 28.5 3.3 21 233-253 195-215 (229)
393 4e12_A Diketoreductase; oxidor 20.8 2.7E+02 0.0091 25.1 7.7 32 217-250 5-36 (283)
394 3d02_A Putative LACI-type tran 20.8 4.2E+02 0.014 23.1 13.7 51 277-328 203-258 (303)
395 2vc6_A MOSA, dihydrodipicolina 20.7 2.1E+02 0.0072 26.3 7.1 85 155-248 23-133 (292)
396 1f6k_A N-acetylneuraminate lya 20.7 2.4E+02 0.0084 25.9 7.5 26 155-180 26-52 (293)
397 1ka9_F Imidazole glycerol phos 20.6 4E+02 0.014 23.2 8.7 51 158-208 157-219 (252)
398 3vk5_A MOEO5; TIM barrel, tran 20.6 1.1E+02 0.0036 28.9 4.9 39 155-194 55-101 (286)
399 4fxs_A Inosine-5'-monophosphat 20.6 2.2E+02 0.0075 28.5 7.6 65 156-228 233-306 (496)
400 1ydn_A Hydroxymethylglutaryl-C 20.4 2.6E+02 0.0089 25.5 7.6 19 155-173 157-175 (295)
401 4a29_A Engineered retro-aldol 20.0 4.1E+02 0.014 24.5 8.6 74 164-246 74-158 (258)
No 1
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=100.00 E-value=6.7e-51 Score=382.02 Aligned_cols=225 Identities=25% Similarity=0.361 Sum_probs=193.2
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
||+|||||||||+||++||++|++.++ +.||+|.|.++++.++++++... ....+|+++.+++.+.++
T Consensus 2 mk~iGilGGmg~~at~~~~~~i~~~~~~~~~~~h~~~~~~~s~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~ 70 (231)
T 3ojc_A 2 MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQL-----------QAKGDWQTAAQLLSNAAI 70 (231)
T ss_dssp CCCEEEEECTTHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEECCHHHHHHH-----------HHTTCHHHHHHHHHHHHH
T ss_pred CCeEEEEccCCHHHHHHHHHHHHHHhHHhcCCCCCccceeeCCChhhHHHH-----------HHCCChhHHHHHHHHHHH
Confidence 899999999999999999999999997 57888876555555556653221 123456999999999999
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhc
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ 240 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~ 240 (376)
+|+++|||+|||||||+|++++++++.+++||+||+++++++++..+. +|||||||++|+++++|++.++++
T Consensus 71 ~L~~~g~~~iviaCNTa~~~~~~l~~~~~iPvi~i~~~~~~~a~~~~~--------~rVgvLaT~~T~~s~~y~~~l~~~ 142 (231)
T 3ojc_A 71 SLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGI--------DKIGLLGTRYTMEQGFYRGRLTEK 142 (231)
T ss_dssp HHHHHTCCEEEECSSGGGGGHHHHHHHHCSCBCCHHHHHHHHHHHTTC--------CEEEEESCHHHHHSTTTHHHHHHT
T ss_pred HHHhcCCCEEEEeCCchHHHHHHHHHhCCCCEeccHHHHHHHHHHcCC--------CEEEEEcCHHHhhchHHHHHHHhc
Confidence 999999999999999999999999999999999999999999987543 499999999999999999999999
Q ss_pred -CCceeecCccccccchHHHH-HHHhcCCh-HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCCCCCCeeeehHHH
Q 017159 241 -GFEVVLPDKATMEHVIIPTI-EALNHRDM-EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDA 317 (376)
Q Consensus 241 -G~evv~p~~~~q~~~l~~~i-e~lk~G~~-~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~~~~vpvIDp~~~ 317 (376)
|++++.|+.+.++. +...| ++++.|.. +++++.+.++++.|.++|+|+|||||||||++.+..+ .++|+|||+++
T Consensus 143 ~g~~v~~p~~~~~~~-v~~~I~~~~~~g~~~~~~~~~~~~~~~~l~~~g~d~vILGCTe~pll~~~~~-~~v~viDs~~~ 220 (231)
T 3ojc_A 143 HGIEVITPDDTDREA-VNRIIYEELCLGIISETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQD-ASVPVFDTTAI 220 (231)
T ss_dssp TCCEEECCCHHHHHH-HHHHHHHTGGGTCCCHHHHHHHHHHHHHHHHTTCSCEEECSGGGGGTCCGGG-CSSCEEEHHHH
T ss_pred CCCEEEecCHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHhccccc-CCCcEEchHHH
Confidence 99999988765542 33333 45788876 5578899999999999999999999999999987765 45899999999
Q ss_pred HHHHHHHHHH
Q 017159 318 LARSTVTWAR 327 (376)
Q Consensus 318 lA~a~v~~a~ 327 (376)
+|+++++++.
T Consensus 221 ~A~~~v~~a~ 230 (231)
T 3ojc_A 221 HASAAADYAL 230 (231)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999985
No 2
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=100.00 E-value=1.1e-49 Score=381.71 Aligned_cols=227 Identities=26% Similarity=0.469 Sum_probs=197.9
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
||+|||||||||+||++||++|++.++ +.|++|+|++++|+|+++++..... ..+ +...+.+.+.++
T Consensus 26 ~k~IGiiGGmg~~aT~~~~~~i~~~~~~~~D~~h~p~~~~s~~~i~~r~~~~~----~~g--------~~~~~~l~~~~~ 93 (268)
T 3s81_A 26 KHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLL----SGG--------PSPYRYLERYLH 93 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHSCCSSGGGSCCEEEEECTTSCCHHHHHH----HCC--------CCSHHHHHHHHH
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhhHhhcCCCCCCEEEeccCCHHHHHHHHH----hCC--------chHHHHHHHHHH
Confidence 789999999999999999999999997 6899999999999999998763210 001 123345777889
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhc
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ 240 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~ 240 (376)
+|+++|||+|||||||+|++++++++.+++||+||+++++++++ .+ .+|||||||++|+++++|++.++++
T Consensus 94 ~L~~~Gad~IVIaCNTah~~l~~lr~~~~iPvigiiea~~~aa~-~~--------~~rVgVLaT~~T~~s~~y~~~l~~~ 164 (268)
T 3s81_A 94 MLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIP-PS--------ARHVGLLATNATLATGLYQKKALAR 164 (268)
T ss_dssp HHHHTTCSEEECSCSGGGGGHHHHHHHCSSEEECHHHHHHHTSC-TT--------CCEEEEECCHHHHHTTTTHHHHHHH
T ss_pred HHHHcCCCEEEEeCCCHHHHHHHHHHHCCCCEEcccHHHHHHHH-hc--------CCcEEEEechHHhhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998776 33 3599999999999999999999999
Q ss_pred CCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCC-CCCCCeeeehHHHHH
Q 017159 241 GFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKD-DPLLKKCIDPMDALA 319 (376)
Q Consensus 241 G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~-~~~~vpvIDp~~~lA 319 (376)
|+++++|+.++++. ++.+|+.++.|+.+..++.++++++.|.++|+|+|||||||||++.+.. .+.++|+|||++++|
T Consensus 165 g~~~~v~~~~~~~~-v~~~I~~ve~g~~~~~~~~l~~~l~~l~~~g~d~vILGCTh~pll~~~l~~~~~v~viDs~~~~A 243 (268)
T 3s81_A 165 GLTLIQPEDAGQAL-VMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLV 243 (268)
T ss_dssp TCEEECCCHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSEEEECSTTHHHHHTTTGGGSSSCEEEHHHHHH
T ss_pred CCceEecCcccHHH-HHHHHHHHHcCCchhHHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHhcCCCCeEEccHHHHH
Confidence 99999999888763 5566788999998767889999999999999999999999999998763 344689999999999
Q ss_pred HHHHHHHHhcc
Q 017159 320 RSTVTWARSNK 330 (376)
Q Consensus 320 ~a~v~~a~~~~ 330 (376)
+++++++....
T Consensus 244 ~~~~~~l~~~~ 254 (268)
T 3s81_A 244 RAAIRWYESWP 254 (268)
T ss_dssp HHHHHHHTTST
T ss_pred HHHHHHHHhcC
Confidence 99999998763
No 3
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=100.00 E-value=1.3e-48 Score=364.37 Aligned_cols=225 Identities=28% Similarity=0.469 Sum_probs=197.6
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
||+|||||||||+||++||++|++.++ +.||+|+|++++|+|+++++..... + + |+...+.+.+.++
T Consensus 1 m~~iGiiGGmg~~at~~~~~~i~~~~~~~~d~~~~~~~~~~~~~i~~r~~~~~------~----~--~~~~~~~l~~~~~ 68 (228)
T 1jfl_A 1 MKTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYIL------G----K--GEDPRPQLIWTAK 68 (228)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHHHT------T----S--SCCCHHHHHHHHH
T ss_pred CCeEEEecccCHHHHHHHHHHHHHHHHhhcCCccCcEeEEeCCCHHHHHHHHH------c----C--CchHHHHHHHHHH
Confidence 789999999999999999999999997 6899999999999999998765321 1 1 3556777888999
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhc
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ 240 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~ 240 (376)
+|++.|+|+|||||||+|++++++++.+++||+||++++++.+.+.+. +|||||||++|+++++|++.++++
T Consensus 69 ~l~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~~~~~~a~~~~~--------~rigvlaT~~T~~~~~y~~~l~~~ 140 (228)
T 1jfl_A 69 RLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGF--------KKAGLLATTGTIVSGVYEKEFSKY 140 (228)
T ss_dssp HHHHHTCSEEECSCTGGGGGHHHHHHHCSSCBCCHHHHHHHHHHHTTC--------SEEEEECCHHHHHHTHHHHHHHHT
T ss_pred HHHHcCCCEEEEcCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCC--------CeEEEEecHHHhhhhHHHHHHHHC
Confidence 999999999999999999999999999999999999999999876433 499999999999999999999999
Q ss_pred CCceeecCccccccchHHHHH-HHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCCCCCCeeeehHHHHH
Q 017159 241 GFEVVLPDKATMEHVIIPTIE-ALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALA 319 (376)
Q Consensus 241 G~evv~p~~~~q~~~l~~~ie-~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~~~~vpvIDp~~~lA 319 (376)
|+++++|+.++++. +...++ +++.|+.++.++.+.++++.+.++|+|+|||||||||++.+..+ .++|+|||.+++|
T Consensus 141 g~~v~~~~~~~~~~-~~~~i~~~~~~g~~~~~~~~l~~~~~~l~~~g~d~iiLGCT~~p~l~~~~~-~~vpviDs~~~~a 218 (228)
T 1jfl_A 141 GVEIMTPTEDEQKD-VMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD-LKVPLIDPMDVIA 218 (228)
T ss_dssp TCEEECCCHHHHHH-HHHHHHTTGGGTCHHHHHHHHHHHHHHHHHTTCSEEEECSHHHHHHCCGGG-CSSCEECHHHHHH
T ss_pred CCeEEccCHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHCCcCEEEECCCChHhhhhhhc-CCCCEEChHHHHH
Confidence 99999988776653 555565 78888876678899999999988899999999999999977655 4689999999999
Q ss_pred HHHHHHHHh
Q 017159 320 RSTVTWARS 328 (376)
Q Consensus 320 ~a~v~~a~~ 328 (376)
+++++++.+
T Consensus 219 ~~~~~~a~~ 227 (228)
T 1jfl_A 219 EVAVKVALE 227 (228)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999998753
No 4
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.5e-47 Score=355.50 Aligned_cols=222 Identities=24% Similarity=0.349 Sum_probs=193.7
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
||+|||||||||+||++||++|++.++ +.||+|.+.++++++++|++ ... ...|+++.+.+.+.++
T Consensus 1 m~~iGiiGGmgp~at~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~------------~~~~~~~~~~l~~~~~ 67 (226)
T 2zsk_A 1 MKKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEF-FQN------------PEGWEGRKKILINAAK 67 (226)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEECCTHHH-HTC------------TTHHHHHHHHHHHHHH
T ss_pred CCeEEEecccCHHHHHHHHHHHHHHHHHhcCCccCCeeEEeCCCHHHH-Hhh------------cCCcchHHHHHHHHHH
Confidence 689999999999999999999999997 68999999999999999887 310 1125899999999999
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhc
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ 240 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~ 240 (376)
+|++.|+|+|||||||+|++++++++.+++||+||++++++++...+. +|||||||++|+++++|++.++++
T Consensus 68 ~L~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~a~~~~~~~~~~--------~rigvlaT~~T~~~~~y~~~l~~~ 139 (226)
T 2zsk_A 68 ALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILKRGV--------RKVLLLGTKTTMTADFYIKTLEEK 139 (226)
T ss_dssp HHHHHTCSEEEESSSGGGGGHHHHHHHCSSCBCCHHHHHHHHHHHTTC--------CEEEEESSTTTTSCHHHHHHHHTT
T ss_pred HHHHcCCCEEEECCCcHHHHHHHHHHhCCCCEeccHHHHHHHHHHcCC--------CeEEEEeCHHHHhhhHHHHHHHHC
Confidence 999999999999999999999999999999999999999999877433 499999999999999999999999
Q ss_pred CCceeecCccccccchHHHHH-HHhcCChHHHHHHHHHHHHHHhh-CCCCEEEECCCccccccCCCCCCCCeeeehHHHH
Q 017159 241 GFEVVLPDKATMEHVIIPTIE-ALNHRDMEGARNLLRIGIQLLLV-RAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDAL 318 (376)
Q Consensus 241 G~evv~p~~~~q~~~l~~~ie-~lk~G~~~~a~~~l~~~i~~L~~-~gaDaVILGCTElpll~~~~~~~~vpvIDp~~~l 318 (376)
|+++++|..+.++. +.++|+ +++.|+.+ .++.+.++++.+.+ +|+|+|||||||||++.+... .++|+|||.+++
T Consensus 140 g~~v~~~~~~~~~~-v~~~i~~~~~~g~~~-~~~~l~~~~~~l~~~~g~d~iiLGCT~~p~l~~~~~-~~vpviDs~~~~ 216 (226)
T 2zsk_A 140 GLEVVVPNDEEKEE-LNRIIFEELAFGNLK-NKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGD-VSVEVFDSAEIH 216 (226)
T ss_dssp TCEEECCCHHHHHH-HHHHHHHTGGGTCCT-THHHHHHHHHHHHHHSCCSEEEECSSSGGGTCCGGG-SSSEEEEHHHHH
T ss_pred CCEEEccCHHHHHH-HHHHHHHHHHcCchh-HHHHHHHHHHHHHhhcCCCEEEECCCCHHHHhhccC-CCCcEEChHHHH
Confidence 99999887665543 445554 47788865 67888999999988 899999999999999976653 458999999999
Q ss_pred HHHHHHHHH
Q 017159 319 ARSTVTWAR 327 (376)
Q Consensus 319 A~a~v~~a~ 327 (376)
|+++++++.
T Consensus 217 a~~~~~~a~ 225 (226)
T 2zsk_A 217 MRKLIELAS 225 (226)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999874
No 5
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=100.00 E-value=9.2e-40 Score=312.83 Aligned_cols=245 Identities=16% Similarity=0.197 Sum_probs=202.9
Q ss_pred cccCCeEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHH
Q 017159 79 LNQANTIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAV 151 (376)
Q Consensus 79 ~~~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i 151 (376)
|+.+++|||++ |+|+++. ++.|.+..+. +|+.|.|| + ..+ |+++
T Consensus 4 ~~~~~pIgvfDSGvGGLtv---~~~i~~~lp~~~~iy~~D~a~~PY----------------------G--~~~--~~~i 54 (268)
T 3out_A 4 MLDNRPIGVFDSGIGGLTI---VKNLMSILPNEDIIYFGDIARIPY----------------------G--TKS--RATI 54 (268)
T ss_dssp -CTTSCEEEEESSSTTHHH---HHHHHHHCTTCCEEEEECTTTCCC----------------------T--TSC--HHHH
T ss_pred cCCCCcEEEEECCCChHHH---HHHHHHHCCCCcEEEecCCCCCCC----------------------C--CCC--HHHH
Confidence 55567899999 9999998 7777777763 57777776 2 233 4999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchh-hHHHHhccC-CCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhc
Q 017159 152 SQNLRHKRAFLEQAGARCIVMPCHISHA-WHGDVSEGC-SIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLS 229 (376)
Q Consensus 152 ~~~l~~~~~~L~~~Gad~IVIaCNTAH~-~~d~L~~~~-~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~ 229 (376)
.+++.+.+++|++.|||+|||||||+|. +++++++.+ ++||+||++++++. .. .++|||||||++|++
T Consensus 55 ~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvigiiep~~~~--~~--------~~~~IGVLaT~~Ti~ 124 (268)
T 3out_A 55 QKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVIDVITAGVSL--VD--------NLNTVGVIATPATIN 124 (268)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEEHHHHHHHT--TT--------TCSEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEeccHHHHHH--hc--------cCCeEEEEecCcccc
Confidence 9999999999999999999999999998 589999999 99999999999887 22 346999999999999
Q ss_pred hHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCC-CC
Q 017159 230 AGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKD-DP 306 (376)
Q Consensus 230 s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~-~~ 306 (376)
+++|++.++++|.++.++..+|+. +++.+ +.|.. +++++.++++++.|.++|+|+|||||||||++.+.+ .+
T Consensus 125 s~~y~~~l~~~~~~~~V~~~~~~~--lV~~v---E~g~~~~~~~~~~l~~~l~~l~~~g~D~iILGCTh~pll~~~i~~~ 199 (268)
T 3out_A 125 SNAYALQIHKKNPNIEVYSNPCGL--FVSMI---EEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKI 199 (268)
T ss_dssp HTHHHHHHHHHCTTSEEEEEECTT--HHHHH---HTTCCSSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHHHHHHH
T ss_pred cHHHHHHHHHhCCCCEEecCCChH--HHHHH---HcCCcCCHHHHHHHHHHHHHHHhCCCCEEEECCCChHHHHHHHhcC
Confidence 999999999999999998888886 65444 45664 567888999999998899999999999999997653 24
Q ss_pred CCCeeeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhhhccccc
Q 017159 307 LLKKCIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFSVVVERI 371 (376)
Q Consensus 307 ~~vpvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 371 (376)
.++++|||++++|+++++++...... ..+.......++.|+....|+++.++||+..++.+
T Consensus 200 ~~v~viD~~~~~a~~~~~~l~~~~~~----~~~~~~~~~~~~~t~~~~~~~~~~~~~l~~~~~~~ 260 (268)
T 3out_A 200 LDVKLIDPSLQASKMLYSLLFENKLL----NTTKSNPEYRFYVTDIPLKFRSVGEMFLQTEMQHL 260 (268)
T ss_dssp CCSEEECCHHHHHHHHHHHHHHTTCC----CCCC-CCCEEEEESCCCTTHHHHHHHHHSSCCSEE
T ss_pred CCCceechHHHHHHHHHHHHHhcccc----ccCCCCCcEEEEECCCHHHHHHHHHHHhCCCcCeE
Confidence 56899999999999999999876531 12222335578999999999999999999977654
No 6
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=100.00 E-value=4.6e-39 Score=308.14 Aligned_cols=241 Identities=18% Similarity=0.198 Sum_probs=200.0
Q ss_pred CCeEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQN 154 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~ 154 (376)
.++|||++ |+|+++. ++.|.+..++ +|..+.|| + +++. +++.++
T Consensus 5 ~~~IgvfDSGvGGltv---~~~i~~~lP~~~~iy~~D~a~~PY----------------------G--~ks~--~~i~~~ 55 (269)
T 3ist_A 5 KQAIGFIDSGVGGLTV---VREVLKQLPHEQVYYLGDTARCPY----------------------G--PRDK--EEVAKF 55 (269)
T ss_dssp CCCEEEEESSSTTHHH---HHHHHHHCTTCCEEEEECGGGCCC----------------------T--TSCH--HHHHHH
T ss_pred CCcEEEEECCccHHHH---HHHHHHHCCCCcEEEEeCCCCCCC----------------------C--CCCH--HHHHHH
Confidence 35899999 9999988 7888887763 46666665 2 3444 899999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY 233 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y 233 (376)
+.+.+++|+++|||+|||||||+|.+ ++++++.+++||+||++++++.+.+. +.++|||||||++|+++++|
T Consensus 56 ~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigii~pa~~~A~~~-------~~~~~IGVLaT~~Ti~s~~y 128 (269)
T 3ist_A 56 TWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKA-------TRNNKIGVLGTLGTVESMAY 128 (269)
T ss_dssp HHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHH-------CSSSEEEEEECHHHHHHTHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEeecHHHHHHHHHH-------cCCCeEEEEeccchhhHHHH
Confidence 99999999999999999999999995 99999999999999999888765543 23469999999999999999
Q ss_pred HHHHHhcCCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCC---CCC
Q 017159 234 QEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDD---PLL 308 (376)
Q Consensus 234 ~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~---~~~ 308 (376)
++.++++|.++.++..+++. ++ +.++.|.. +++++.++++++.|.++|+|+|||||||||++.+.+. +.+
T Consensus 129 ~~~i~~~~~~~~v~~~~~~~--lV---~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCTh~pll~~~i~~~~~~~ 203 (269)
T 3ist_A 129 PTALKGLNRRVEVDSLACPK--FV---SVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDG 203 (269)
T ss_dssp HHHHHHHCTTCEEEEEECHH--HH---HHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTTGGGGHHHHHHHHCTT
T ss_pred HHHHHHhCCCCEEeccCCHH--HH---HHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHcCCC
Confidence 99999999888888777776 54 44566775 4678889999999998999999999999999976532 346
Q ss_pred CeeeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhhhc
Q 017159 309 KKCIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFSVV 367 (376)
Q Consensus 309 vpvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 367 (376)
+++|||.+++|+++.+++...... .++.......++.|++...|+++.++||+..
T Consensus 204 v~vIDs~~~~a~~~~~~l~~~~~~----~~~~~~~~~~~~~t~~~~~~~~~~~~~l~~~ 258 (269)
T 3ist_A 204 VAVINSGEETASEVSALLDYHNLL----DATDEEIEHRFFTTGSTQIFKDIAKDWLNMP 258 (269)
T ss_dssp SEEECTHHHHHHHHHHHHHHTTCC----CCCCCCCCCEEEESSCHHHHHHHHHHHHCCT
T ss_pred CeEECcHHHHHHHHHHHHHhcccc----ccCCCCCcEEEEECCCHHHHHHHHHHHcCCC
Confidence 899999999999999999876531 1222234567999999999999999999986
No 7
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=100.00 E-value=3.6e-38 Score=304.81 Aligned_cols=251 Identities=14% Similarity=0.157 Sum_probs=197.7
Q ss_pred CCCcccccccCCeEEEE-cCCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccC
Q 017159 72 SKSPDSLLNQANTIGII-GGVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQL 144 (376)
Q Consensus 72 ~~~~~~~~~~~k~IGII-GGmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~ 144 (376)
---++++|+..++|||+ ||||++ .+|++|++.+++ +|+.++|+ + +.
T Consensus 14 ~~~~~~~~~~~~~IGvfDsG~Ggl---tv~~~i~~~~P~~~~iy~~D~~~~py----------------------G--~~ 66 (290)
T 2vvt_A 14 LVPRGSHMSNQEAIGLIDSGVGGL---TVLKEALKQLPNERLIYLGDTARCPY----------------------G--PR 66 (290)
T ss_dssp -CTTSSCCGGGSCEEEEESSSTTH---HHHHHHHHHCTTSCEEEEECTTTCCC----------------------T--TS
T ss_pred CCCCCccccCCCcEEEEeCCCcHH---HHHHHHHHHCCCccEEEecccccCCC----------------------C--CC
Confidence 33467777555789999 899994 579999999974 46777775 1 22
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCcEEEEeCCCch-hhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 145 DHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISH-AWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 145 ~~~~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH-~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
+ |+++.+++.+.+++|++.|||+|||||||+| ++++++++.+++||+||++++++.+... +.++||||||
T Consensus 67 s--~~~i~~~~~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigiiepa~~~A~~~-------~~~~rIgVLa 137 (290)
T 2vvt_A 67 P--AEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKV-------TKNNKIGVIG 137 (290)
T ss_dssp C--HHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESSHHHHHHHHHH-------CSSSEEEEEE
T ss_pred C--HHHHHHHHHHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEcccHHHHHHHHHh-------cCCCEEEEEe
Confidence 3 3889999999999999999999999999999 4699999999999999999999888753 2346999999
Q ss_pred cchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCcccccc
Q 017159 224 TDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVL 301 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~ 301 (376)
|++|+++++|++.+++++.++.+....+.. + ++.++.|.. ++.++.+.++++.+.++|+|+|||||||||++.
T Consensus 138 T~~T~~s~~y~~~l~~~~~~~~v~~~~~~~--l---v~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGCTh~p~l~ 212 (290)
T 2vvt_A 138 TLGTIKSASYEIAIKSKAPAIEVTSLACPK--F---VPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLR 212 (290)
T ss_dssp CHHHHHTTHHHHHHHTTCTTSEEEEEECTT--H---HHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGH
T ss_pred CcHhhhhHHHHHHHHHhCCCCEEEeccCHH--H---HHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCcCHHHHH
Confidence 999999999999999986554444334443 4 445666765 457788999999998889999999999999987
Q ss_pred CCCC---CCCCeeeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhhh
Q 017159 302 PKDD---PLLKKCIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFSV 366 (376)
Q Consensus 302 ~~~~---~~~vpvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 366 (376)
+... +.++|+|||.+++|+++++++..... ++.. ........++.|+....|++++++||+.
T Consensus 213 ~~i~~~l~~~vpvIDs~~a~a~~~~~~l~~~~l--~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~l~~ 277 (290)
T 2vvt_A 213 PVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDI--AHTP-EAPTQPHEFYTTGSAKMFEEIASSWLGI 277 (290)
T ss_dssp HHHHHHHCTTCEEEEHHHHHHHHHHHHHHHTTC--CCCC------CCEEEESSCHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCeEECcHHHHHHHHHHHHHhcCC--cccc-cCCCCcEEEEECCCHHHHHHHHHHHhCC
Confidence 6542 34689999999999999999976542 1110 1101235789999999999999999986
No 8
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=100.00 E-value=8e-38 Score=300.06 Aligned_cols=242 Identities=18% Similarity=0.168 Sum_probs=193.5
Q ss_pred cccccc-cCCeEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcc
Q 017159 75 PDSLLN-QANTIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDH 146 (376)
Q Consensus 75 ~~~~~~-~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~ 146 (376)
-+-+|+ ...+|||++ |+|+++. ++.|.+..+. +|..+.|| + ++
T Consensus 16 ~~~~~~~~~~~IgvfDSGvGGLtv---~~~i~~~lP~e~~iy~~D~a~~PY----------------------G--~k-- 66 (274)
T 3uhf_A 16 ENLYFQSNAMKIGVFDSGVGGLSV---LKSLYEARLFDEIIYYGDTARVPY----------------------G--VK-- 66 (274)
T ss_dssp -CCCCCCSCCEEEEEESSSTTHHH---HHHHHHTTCCSEEEEEECTTTCCC----------------------T--TS--
T ss_pred ceeeccCCCCeEEEEECCCChHHH---HHHHHHHCCCCCEEEEecCCCCCC----------------------C--CC--
Confidence 344554 335899999 9999988 7888887763 57777776 2 23
Q ss_pred hHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecc
Q 017159 147 IRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 147 ~~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
.|+++.+++.+.+++|++.|||+|||||||+|.+ ++++|+.+++||+||++++++.+.+... +.++|||||||+
T Consensus 67 s~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigiiepa~~~a~~~~~-----t~~~~IGVLaT~ 141 (274)
T 3uhf_A 67 DKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALH-----DKNKEILVIATK 141 (274)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECSHHHHHHHHHHHHC-----CTTSCEEEEECH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcCCHHHHHHHHHhcc-----cCCCeEEEEecc
Confidence 3599999999999999999999999999999987 8999999999999999999998887410 124599999999
Q ss_pred hhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCC
Q 017159 226 ATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPK 303 (376)
Q Consensus 226 ~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~ 303 (376)
+|+++++|++.++++|...+.|. +++. +++.|| .|.. +..++.++++++.+. |+|+|||||||||++.+.
T Consensus 142 ~Ti~s~~Y~~~l~~~~~~~V~~~-~~~~--lV~~IE---~g~~~~~~~~~~~~~~l~~l~--g~D~iILGCTh~PlL~~~ 213 (274)
T 3uhf_A 142 ATIKSEEYQKRLLSQGYTNINAL-ATGL--FVPMVE---EGIFEGDFLQSAMEYYFKNIT--TPDALILACTHFPLLGRS 213 (274)
T ss_dssp HHHHHTHHHHHHHTTTCCCEEEE-ECTT--HHHHHH---TTCCSSHHHHHHHHHHHTTCC--CCSEEEECSTTGGGGHHH
T ss_pred ccccHHHHHHHHHHcCCceEEec-CCHH--HHHHHH---cCCCCCHHHHHHHHHHHHHhc--CCCEEEECCCChHHHHHH
Confidence 99999999999999988777764 3554 655554 4654 456778888887776 999999999999999766
Q ss_pred CC---CCCCeeeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhhh
Q 017159 304 DD---PLLKKCIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFSV 366 (376)
Q Consensus 304 ~~---~~~vpvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 366 (376)
.. +.++++|||++++|+++++++..... .......++.|++...|++++++||+.
T Consensus 214 i~~~~~~~v~lIDs~~~~A~~~~~~l~~~~~--------~~~~~~~~~~t~~~~~~~~~~~~~l~~ 271 (274)
T 3uhf_A 214 LSKYFGDKTKLIHSGDAIVEFLKERENIDLK--------NHKAKLHFYASSDVESLKNTAKIWLNL 271 (274)
T ss_dssp HHHHHCTTCEEEEHHHHHHHHHHHHSCCCCC--------SSCCEEEEEESSCHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCEEEcCHHHHHHHHHHHHHhccc--------CCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 42 34689999999999999998754321 111234689999999999999999975
No 9
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=100.00 E-value=2.8e-37 Score=298.04 Aligned_cols=247 Identities=15% Similarity=0.103 Sum_probs=192.9
Q ss_pred cccccccCCeEEEE-cCCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcch
Q 017159 75 PDSLLNQANTIGII-GGVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHI 147 (376)
Q Consensus 75 ~~~~~~~~k~IGII-GGmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~ 147 (376)
+..+|+ ++|||+ +||| ++.++++|.+.++. +|+.|+|+. ..++
T Consensus 17 ~~~~m~--~~IGvfDsG~G---gltv~~~i~~~~P~~~~iy~~D~~~~Pyg------------------------~~s~- 66 (286)
T 2jfq_A 17 RGSHMN--KPIGVIDSGVG---GLTVAKEIMRQLPNETIYYLGDIGRCPYG------------------------PRPG- 66 (286)
T ss_dssp ----CC--SCEEEEESSST---THHHHHHHHHHCTTCCEEEEECTTTCCCT------------------------TSCH-
T ss_pred CccccC--CcEEEEeCCCC---cHHHHHHHHHHCCCccEEEeccCCCCCcC------------------------CCCH-
Confidence 335563 489999 8999 66779999999974 578888862 1233
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCCCchh-hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 148 RGAVSQNLRHKRAFLEQAGARCIVMPCHISHA-WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 148 ~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
+++.+++.+.+++|++.|||+|||||||+|. +++++++.+++||+||++++++.+... ..++|||||||++
T Consensus 67 -~~i~~~~~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi~e~a~~~A~~~-------~~~~rIgVLaT~~ 138 (286)
T 2jfq_A 67 -EQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMT-------TRNQNVLVLGTEG 138 (286)
T ss_dssp -HHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEESHHHHHHHHHHH-------CSSSEEEEEECHH
T ss_pred -HHHHHHHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEeccHHHHHHHHHh-------cCCCEEEEEeChH
Confidence 7889999999999999999999999999996 699999999999999999999887763 1345999999999
Q ss_pred hhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCCh--HHH-HHHHHHHHHHHhhCCCCEEEECCCccccccCC
Q 017159 227 TLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGA-RNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPK 303 (376)
Q Consensus 227 T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a-~~~l~~~i~~L~~~gaDaVILGCTElpll~~~ 303 (376)
|+++++|++.+++++..+.+....+.+ + ++.++.|.. ++. ++.++++++.+.++|+|+|||||||||++.+.
T Consensus 139 T~~~~~y~~~l~~~~~~~~v~~~~~~~--~---v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVLGCTh~p~l~~~ 213 (286)
T 2jfq_A 139 TIKSEAYRTHIKRINPHVEVHGVACPG--F---VPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKP 213 (286)
T ss_dssp HHHHTHHHHHHHHHCTTCEEEEEECTT--H---HHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEEESSSGGGGHHH
T ss_pred HhcchHHHHHHHHhCCCCEEEecCCHH--H---HHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEEcCcCHHHHHHH
Confidence 999999999999984333333333443 4 345566765 456 78899999999888999999999999998765
Q ss_pred CC---CCCCeeeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhhhcc
Q 017159 304 DD---PLLKKCIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFSVVV 368 (376)
Q Consensus 304 ~~---~~~vpvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 368 (376)
.. +.++|+|||.+++|+++++++..... ++ .........++.|++...|++++++||+..+
T Consensus 214 i~~~l~~~vpvIDs~~a~a~~~~~~l~~~~~--~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 277 (286)
T 2jfq_A 214 IYDYFGGKKTVISSGLETAREVSALLTFSNE--HA--SYTEHPDHRFFATGDTTHITNIIKEWLNLSV 277 (286)
T ss_dssp HHHHTTTCSEEEEHHHHHHHHHHHHHHHTTC--CC--CCCSSCCCEEEESSCCHHHHHHHHHHHCCCC
T ss_pred HHHHcCCCCEEECcHHHHHHHHHHHHHhccc--cc--ccCCCCcEEEEECCCHHHHHHHHHHHcCCCC
Confidence 42 44689999999999999999876542 11 1111123568899999999999999998754
No 10
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=100.00 E-value=5.3e-37 Score=294.01 Aligned_cols=245 Identities=16% Similarity=0.191 Sum_probs=191.6
Q ss_pred cccccccCCeEEEE-cCCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcch
Q 017159 75 PDSLLNQANTIGII-GGVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHI 147 (376)
Q Consensus 75 ~~~~~~~~k~IGII-GGmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~ 147 (376)
-+++|+..++|||+ ||||++ .++++|.+.+++ +|+.|+|+ + ..+
T Consensus 5 ~~~~~~~~~~IGv~DsG~Ggl---tv~~~i~~~~P~~~~iy~~D~~~~Py----------------------g--~~s-- 55 (273)
T 2oho_A 5 RGSHMMDTRPIGFLDSGVGGL---TVVCELIRQLPHEKIVYIGDSARAPY----------------------G--PRP-- 55 (273)
T ss_dssp TSSCBCCCCCEEEEESSSTTH---HHHHHHHHHCTTCCEEEEECGGGCCC----------------------T--TSC--
T ss_pred CcccccCCCcEEEEeCCCcHH---HHHHHHHHHCCCCCEEEEeCCCCCCC----------------------C--CCC--
Confidence 34566445689999 899984 579999999874 34545544 1 223
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 148 RGAVSQNLRHKRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 148 ~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
++++.+++.+.+++|++.|||+|||||||+|.+ ++++++.+++||+||++++++.+... +.++|||||||++
T Consensus 56 ~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~epa~~~A~~~-------~~~~rIgVlaT~~ 128 (273)
T 2oho_A 56 KKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKS-------TTKGQVGVIGTPM 128 (273)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHH-------CSSSEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEeccHHHHHHHHHh-------cCCCeEEEEECch
Confidence 378999999999999999999999999999965 89999999999999999998887764 2346999999999
Q ss_pred hhchHHHHHHHHhc--CCceee-cCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCcccccc
Q 017159 227 TLSAGFYQEKLQNQ--GFEVVL-PDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVL 301 (376)
Q Consensus 227 T~~s~~Y~~~L~~~--G~evv~-p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~ 301 (376)
|+++++|++.++++ |++++. |. .. ++ +.++.|.. ++.++.+.++++.+.++ +|+|||||||||++.
T Consensus 129 T~~~~~y~~~l~~~~~g~~v~~~~~---~~--~v---~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~iVLGCTh~p~l~ 199 (273)
T 2oho_A 129 TVASDIYRKKIQLLAPSIQVRSLAC---PK--FV---PIVESNEMCSSIAKKIVYDSLAPLVGK-IDTLVLGCTHYPLLR 199 (273)
T ss_dssp HHHHTHHHHHHHHHCTTSEEEEEEC---TT--HH---HHHCC-----HHHHHHHHHHHTTTTTS-CSEEEECSTTGGGGH
T ss_pred hhcchHHHHHHHHhCCCCEEEecCC---HH--HH---HHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEcCCCHHHHH
Confidence 99999999999998 888773 43 22 33 34566775 45678899999988877 999999999999987
Q ss_pred CCCC---CCCCeeeehHHHHHHHHHHHHHhccccccccccCCC-CCCCCcccchhHHHHHHHHHHHhhhcc
Q 017159 302 PKDD---PLLKKCIDPMDALARSTVTWARSNKKLTLLLDSQSS-AKQCPREQSSALLQFKQLWKILFSVVV 368 (376)
Q Consensus 302 ~~~~---~~~vpvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~ 368 (376)
+... +.++|+|||.+++|+++++++..... + ..... .....++.|++...|+++.+.||+..+
T Consensus 200 ~~i~~~~~~~vpviDs~~~~a~~~~~~l~~~~~--~--~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 266 (273)
T 2oho_A 200 PIIQNVMGPSVKLIDSGAECVRDISVLLNYFDI--N--GNYHQKAVEHRFFTTANPEIFQEIASIWLKQKI 266 (273)
T ss_dssp HHHHHHHCTTSEEEEHHHHHHHHHHHHHHHTTC--C--CCTTCCCCCCEEEESSCHHHHHHHHHHHTTSCC
T ss_pred HHHHHHhCCCCEEECcHHHHHHHHHHHHHhccc--c--cccCCCCCceEEEECCCHHHHHHHHHHHcCCCC
Confidence 6541 33589999999999999999876542 1 11122 134578899999999999999998754
No 11
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-36 Score=291.46 Aligned_cols=241 Identities=18% Similarity=0.195 Sum_probs=190.3
Q ss_pred CeEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHH
Q 017159 83 NTIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNL 155 (376)
Q Consensus 83 k~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l 155 (376)
++|||+. |+|.++. +++|.+.+++ +|+.|.|+- ..++ +++.+++
T Consensus 4 ~~IgvfDSGvGGltv---~~~i~~~lP~~~~iy~~D~~~~PyG------------------------~~s~--~~i~~~~ 54 (272)
T 1zuw_A 4 QPIGVIDSGVGGLTV---AKEIMRQLPKENIIYVGDTKRCPYG------------------------PRPE--EEVLQYT 54 (272)
T ss_dssp SCEEEEESSSTTHHH---HHHHHHHSTTCCEEEEECGGGCCCS------------------------SSCH--HHHHHHH
T ss_pred CeEEEEeCCcchHHH---HHHHHHhCCCCcEEEeccCCCCCCC------------------------CCCH--HHHHHHH
Confidence 4899997 9998765 9999998874 488888762 2233 7899999
Q ss_pred HHHHHHHHH-cCCcEEEEeCCCchh-hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH
Q 017159 156 RHKRAFLEQ-AGARCIVMPCHISHA-WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY 233 (376)
Q Consensus 156 ~~~~~~L~~-~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y 233 (376)
.+.+++|++ .|||+|||||||+|. +++++++.+++||+||++++++.+... +.++|||||||++|+++++|
T Consensus 55 ~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigiiepa~~~A~~~-------~~~~rIgVlaT~~T~~s~~y 127 (272)
T 1zuw_A 55 WELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVIQPGARAAIKV-------TDNQHIGVIGTENTIKSNAY 127 (272)
T ss_dssp HHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHH-------CSSSEEEEEECHHHHHTTHH
T ss_pred HHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcccHHHHHHHHHh-------cCCCEEEEEEChhhhhhhHH
Confidence 999999999 999999999999997 699999999999999999999887763 23469999999999999999
Q ss_pred HHHHHhcCCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCC---CCC
Q 017159 234 QEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDD---PLL 308 (376)
Q Consensus 234 ~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~---~~~ 308 (376)
++.+++++..+.+....+.. + ++.++.|.. ++.++.++++++.+.++|+|+|||||||||++.+... +.+
T Consensus 128 ~~~i~~~~~~~~v~~~~~~~--~---v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLGCTh~pll~~~i~~~~~~~ 202 (272)
T 1zuw_A 128 EEALLALNPDLKVENLACPL--L---VPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGCTHYPILKEAIQRYMGEH 202 (272)
T ss_dssp HHHHHHHCTTCEEEEEECTT--H---HHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEESTTGGGGHHHHHHHHCTT
T ss_pred HHHHHHhCCCCEEEeccCHH--H---HHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHHHHHcCCC
Confidence 99999984333333333443 4 445667776 4567889999999988999999999999999876542 446
Q ss_pred CeeeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhhhcc
Q 017159 309 KKCIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFSVVV 368 (376)
Q Consensus 309 vpvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 368 (376)
+|+|||.+++|+++.+++..... ++ +........++.|+....|++++++||+..+
T Consensus 203 v~vIDs~~~~a~~~~~~l~~~~~--~~--~~~~~~~~~~~~t~~~~~~~~~~~~~l~~~~ 258 (272)
T 1zuw_A 203 VNIISSGDETAREVSTILSYKGL--LN--QSPIAPDHQFLTTGARDQFAKIADDWFGHEV 258 (272)
T ss_dssp SEEEEHHHHHHHHHHHHHHHHTC--CC--CCCSCCCEEEEESSCHHHHHHHHHHHC----
T ss_pred CeEECcHHHHHHHHHHHHHhccc--cc--CCCCCCcEEEEECCCHHHHHHHHHHHhCCCc
Confidence 89999999999999999876442 11 1111123568899999999999999998754
No 12
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=100.00 E-value=5.6e-36 Score=286.07 Aligned_cols=239 Identities=19% Similarity=0.202 Sum_probs=193.6
Q ss_pred CeEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHH
Q 017159 83 NTIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNL 155 (376)
Q Consensus 83 k~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l 155 (376)
++|||++ |+|+++. +++|.+..++ +|+.|+|+. ..+ ++++.+++
T Consensus 4 ~~IgvfDSGvGGltv---~~~i~~~lP~~~~iy~~D~~~~Pyg------------------------~~s--~~~i~~~~ 54 (267)
T 2gzm_A 4 RAIGVIDSGVGGLTV---AKELIRQLPKERIIYLGDTARCPYG------------------------PRS--REEVRQFT 54 (267)
T ss_dssp SCEEEEESSSTTHHH---HHHHHHHCTTSCEEEEECTTTCCCT------------------------TSC--HHHHHHHH
T ss_pred CcEEEEeCCccHHHH---HHHHHHHCCCCCEEEecCCCCCCCC------------------------CCC--HHHHHHHH
Confidence 4899998 9998876 7999998873 688888861 123 37899999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh-hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHA-WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ 234 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~ 234 (376)
.+.+++|++.|||+|||||||+|. +++++++.+++||+||++++++.+... +.++|||||||++|+++++|+
T Consensus 55 ~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~ep~~~~A~~~-------~~~~rIgVlaT~~T~~~~~y~ 127 (267)
T 2gzm_A 55 WEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKV-------TNTYHVGIIGTIGTVKSGAYE 127 (267)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHH-------CSSCEEEEEECHHHHHHTHHH
T ss_pred HHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeecHHHHHHHHHc-------cCCCEEEEEEChHHhccHHHH
Confidence 999999999999999999999996 799999999999999999999988764 134599999999999999999
Q ss_pred HHHHhc--CCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCC---CC
Q 017159 235 EKLQNQ--GFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDD---PL 307 (376)
Q Consensus 235 ~~L~~~--G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~---~~ 307 (376)
+.++++ |+++.. ..+.+ ++ +.++.|.. ++.++.+.++++.+.++|+|+|||||||||++.+... +.
T Consensus 128 ~~l~~~~~g~~v~~--~~~~~--~v---~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCTh~p~l~~~i~~~~~~ 200 (267)
T 2gzm_A 128 EALKSINNRVMVES--LACPP--FV---ELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIKQVMGD 200 (267)
T ss_dssp HHHHHHCTTCEEEE--EECTT--HH---HHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECSTTGGGGHHHHHHHHCT
T ss_pred HHHHHhCCCCEEec--cCCHH--HH---HHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcccChHHHHHHHHHHcCC
Confidence 999998 777652 23333 43 34556765 4577889999999988999999999999999876542 44
Q ss_pred CCeeeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhhhcc
Q 017159 308 LKKCIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFSVVV 368 (376)
Q Consensus 308 ~vpvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 368 (376)
++|+|||.+++|+++++++..... ++ .+.......++.|+....|+++.+.||+..+
T Consensus 201 ~vpviDs~~~~a~~~~~~l~~~~~--~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 257 (267)
T 2gzm_A 201 KVQLISSGDETAREVSTILYHSKM--LN--EGEEQSDHLFLTTGKIGLFKEIASKWFGQPI 257 (267)
T ss_dssp TSEEEEHHHHHHHHHHHHHHHTTC--CC--CSSCCCCCEEEESSCHHHHHHHHHHHTCCCS
T ss_pred CCEEECcHHHHHHHHHHHHHhccc--cc--ccCCCCcEEEEECCCHHHHHHHHHHHhCCCc
Confidence 689999999999999999876542 11 1111223578999999999999999998754
No 13
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=100.00 E-value=1.1e-35 Score=285.41 Aligned_cols=240 Identities=15% Similarity=0.171 Sum_probs=192.5
Q ss_pred CeEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHH
Q 017159 83 NTIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNL 155 (376)
Q Consensus 83 k~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l 155 (376)
++|||+. |+|.++. +++|.+..++ +|+.|.|+ + +.++ +++.+++
T Consensus 8 ~~IgvfDSGvGGltv---~~~i~~~lP~~~~iy~~D~~~~Py----------------------G--~~s~--~~i~~~~ 58 (276)
T 2dwu_A 8 SVIGVLDSGVGGLTV---ASEIIRQLPKESICYIGDNERCPY----------------------G--PRSV--EEVQSFV 58 (276)
T ss_dssp CEEEEEESSSTTHHH---HHHHHHHCTTSCEEEEECGGGCCC----------------------T--TSCH--HHHHHHH
T ss_pred CeEEEEeCCcchHHH---HHHHHHhCCCCcEEEccCCCCCCC----------------------C--CCCH--HHHHHHH
Confidence 5899997 9998865 7999988874 46666665 1 2333 8899999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh-hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHH
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHA-WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQ 234 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~ 234 (376)
.+.+++|++.|+|+|||||||+|. +++++++.+++||+||++++++.+.+. +.++|||||||++|++++.|+
T Consensus 59 ~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigiiep~~~~A~~~-------~~~~rIgVlaT~~T~~s~~y~ 131 (276)
T 2dwu_A 59 FEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKV-------TKKGKIGVIGTVGTIQSNMYE 131 (276)
T ss_dssp HHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHH-------CSSSEEEEEECHHHHHTTHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEeccHHHHHHHHHh-------cCCCeEEEEeChhhhhhHHHH
Confidence 999999999999999999999994 799999999999999999999887763 234699999999999999999
Q ss_pred HHHHhcCCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCC---CCCC
Q 017159 235 EKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDD---PLLK 309 (376)
Q Consensus 235 ~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~---~~~v 309 (376)
+.+++++.++.+....+.. +++ .++.|.. ++.++.+.++++.+.++|+|+|||||||||++.+... +.++
T Consensus 132 ~~i~~~~~~~~v~~~~~~~--~v~---~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh~p~l~~~i~~~~~~~v 206 (276)
T 2dwu_A 132 KALHELDTYLKVHSHACPT--LAT---VVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGEDV 206 (276)
T ss_dssp HHHHHHCTTCEEEEEECTT--HHH---HHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTTGGGGHHHHHHHHCTTS
T ss_pred HHHHHhCCCCEEEeeeCHH--HHH---HHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHcCCCC
Confidence 9999986555444444554 544 4555765 4577889999999988899999999999999876542 4468
Q ss_pred eeeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhhhcc
Q 017159 310 KCIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFSVVV 368 (376)
Q Consensus 310 pvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 368 (376)
|+|||.+++|+++.+++..... ++ ... .....++.|++...|++++++||+..+
T Consensus 207 ~vIDs~~~~a~~~~~~l~~~~~--~~--~~~-~~~~~~~~t~~~~~~~~~~~~~l~~~~ 260 (276)
T 2dwu_A 207 TIISSAEETAIELSTILQHKGI--LA--DNL-NPKHRFFTTGSVSSFEHIAERWLGYQI 260 (276)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTC--CC--CCS-SCCCEEEESSCHHHHHHHHHHHHSSCC
T ss_pred eEECcHHHHHHHHHHHHHhccc--cc--CCC-CCcEEEEECCCHHHHHHHHHHHcCCCc
Confidence 9999999999999999876542 11 111 234578999999999999999998754
No 14
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=100.00 E-value=1.4e-33 Score=271.99 Aligned_cols=209 Identities=15% Similarity=0.154 Sum_probs=171.0
Q ss_pred CCeEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQN 154 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~ 154 (376)
.++|||+. |+|+++. +++|.+.++. +|++|+|+.. .+. +++.++
T Consensus 21 ~~~IgvfDSGvGGltv---~~~i~~~lP~~~~iy~~D~~~~PyG~------------------------~s~--~~i~~~ 71 (285)
T 2jfn_A 21 RPTVLVFDSGVGGLSV---YDEIRHLLPDLHYIYAFDNVAFPYGE------------------------KSE--AFIVER 71 (285)
T ss_dssp EEEEEEEESSSTHHHH---HHHHHHHSTTSEEEEEECTTTCCTTT------------------------SCH--HHHHHH
T ss_pred CCcEEEEeCCccHHHH---HHHHHHhCCCCCeEEeeccCCCCCcc------------------------CCH--HHHHHH
Confidence 45799995 9998755 8999999974 6999999732 222 567777
Q ss_pred HHHHHHHH-HHcCCcEEEEeCCCchh-hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHH
Q 017159 155 LRHKRAFL-EQAGARCIVMPCHISHA-WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGF 232 (376)
Q Consensus 155 l~~~~~~L-~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~ 232 (376)
..+.+++| ++.|||+|||||||+|. +++++++.+++||+||++++..++... .++|||||||++|+++++
T Consensus 72 ~~~i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi~~a~~~a~~~~--------~~~rIgVLaT~~T~~s~~ 143 (285)
T 2jfn_A 72 VVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKPAARLT--------ANGIVGLLATRGTVKRSY 143 (285)
T ss_dssp HHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECCCCCHHHHHHHC--------SSSEEEEEECTTGGGCHH
T ss_pred HHHHHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEehHHHHHHHHHhc--------CCCEEEEEEcHHHHhhHH
Confidence 77777776 45899999999999995 899999999999999998777776543 345999999999999999
Q ss_pred HHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhh--CCCCEEEECCCccccccCCCC---CC
Q 017159 233 YQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLV--RAVNAVIIGSDEMQGVLPKDD---PL 307 (376)
Q Consensus 233 Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~--~gaDaVILGCTElpll~~~~~---~~ 307 (376)
|++.++++|.++.++..+++. +++++|+.+.+. +..++.+.++++.+.+ .|+|+|||||||||++.+... +.
T Consensus 144 y~~~l~~~g~~~~v~~~~~~~--lv~~ie~~~~~~-~~~~~~l~~~l~~l~~~~~~~D~IVLGCTh~p~l~~~i~~~lg~ 220 (285)
T 2jfn_A 144 THELIARFANECQIEMLGSAE--MVELAEAKLHGE-DVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPE 220 (285)
T ss_dssp HHHHHHHSCTTSEEEEEECHH--HHHHHHHHHHTC-CCCHHHHHHHTHHHHTCSSCCSEEEECSTTGGGGHHHHHHHSCT
T ss_pred HHHHHHHhCCCCEEeCCCCHH--HHHHHHhcccCC-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCcHHHHHHHHHhcCC
Confidence 999999999888888877775 667788766555 3467788888888875 589999999999999876532 33
Q ss_pred CCeeeehHHHHHHHHHHHHHhcc
Q 017159 308 LKKCIDPMDALARSTVTWARSNK 330 (376)
Q Consensus 308 ~vpvIDp~~~lA~a~v~~a~~~~ 330 (376)
++|+|||.+++|+++++++....
T Consensus 221 ~vpviDs~~a~a~~~~~~l~~~~ 243 (285)
T 2jfn_A 221 GTRLVDSGAAIARRTAWLLEHEA 243 (285)
T ss_dssp TCEEECSHHHHHHHHHHHHHHTC
T ss_pred CCEEECcHHHHHHHHHHHHHhcc
Confidence 58999999999999999987654
No 15
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=100.00 E-value=1.3e-34 Score=274.48 Aligned_cols=230 Identities=19% Similarity=0.215 Sum_probs=184.5
Q ss_pred eEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHH
Q 017159 84 TIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLR 156 (376)
Q Consensus 84 ~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~ 156 (376)
+|||++ |+|.++ ++++|.+.+++ +|+.|+|+- +.++ +++.+++.
T Consensus 2 ~IgvfDSG~Gglt---v~~~l~~~~P~~~~iy~~D~~~~pyG------------------------~~s~--~~i~~~~~ 52 (254)
T 1b73_A 2 KIGIFDSGVGGLT---VLKAIRNRYRKVDIVYLGDTARVPYG------------------------IRSK--DTIIRYSL 52 (254)
T ss_dssp EEEEEESSSGGGT---HHHHHHHHSTTCEEEEEECTTTCCCT------------------------TSCH--HHHHHHHH
T ss_pred cEEEEECCccHHH---HHHHHHHhCCCCcEEEeecCCCCCCC------------------------cCCH--HHHHHHHH
Confidence 699997 999875 58999998873 688888861 1233 77888999
Q ss_pred HHHHHHHHcCCcEEEEeCCCch-hhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISH-AWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQE 235 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH-~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~ 235 (376)
+.+++|++.|+|+|||||||+| ++++++++.+++||+||++++++.+... ..++|||||||++|+++++|++
T Consensus 53 ~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~e~~~~~A~~~-------~~~~rigVlaT~~T~~~~~y~~ 125 (254)
T 1b73_A 53 ECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKK-------SRNKKIGVIGTPATVKSGAYQR 125 (254)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESHHHHHHHHHHH-------CSSCEEEEEECHHHHHHCHHHH
T ss_pred HHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHHHc-------cCCCEEEEEEChHHhhhHHHHH
Confidence 9999999999999999999999 4799999999999999999999887763 1345999999999999999999
Q ss_pred HHHhcCCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCC---CCCCe
Q 017159 236 KLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDD---PLLKK 310 (376)
Q Consensus 236 ~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~---~~~vp 310 (376)
.+++.|++++.. .+.. + ++.++.|.. ++.++.+.++++++.++ +|+|||||||||++.+... + ++|
T Consensus 126 ~l~~~g~~v~~~--~~~~--~---v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~p~l~~~i~~~~~-~vp 196 (254)
T 1b73_A 126 KLEEGGADVFAK--ACPL--F---APLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHYPLLKKEIKKFLG-DAE 196 (254)
T ss_dssp HHHTTSCEEEEE--ECCC--C---TTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCTTCCHHHHHHHSC-SCE
T ss_pred HHHcCCCEEEec--CCHH--H---HHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccChHHHHHHHHHHcC-CCe
Confidence 999989988621 2222 3 234555654 45678889998888777 9999999999999866532 3 689
Q ss_pred eeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhhhccc
Q 017159 311 CIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFSVVVE 369 (376)
Q Consensus 311 vIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 369 (376)
+|||.+++|+++++++..... + . ..++.|++...|+++.++||+..++
T Consensus 197 viDs~~~~a~~~~~~l~~~~~--~-----~----~~~~~t~~~~~~~~~~~~~~~~~~~ 244 (254)
T 1b73_A 197 VVDSSEALSLSLHNFIKDDGS--S-----S----LELFFTDLSPNLQFLIKLILGRDYP 244 (254)
T ss_dssp EECHHHHHHHTTTTTCCCCSC--C-----C----EEEEESSCCTTHHHHHHHHHSSCCC
T ss_pred EECCHHHHHHHHHHHHHhCCC--c-----c----eEEEECCCHHHHHHHHHHHcCCCcc
Confidence 999999999998876643321 1 0 4578888889999999999986543
No 16
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=100.00 E-value=1.5e-33 Score=267.52 Aligned_cols=234 Identities=18% Similarity=0.159 Sum_probs=180.4
Q ss_pred eEEEEc-CCChHHHHHHHHHHHHHhhh------CCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHH
Q 017159 84 TIGIIG-GVSVSSTLNFLGKLVWYSAK------DAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLR 156 (376)
Q Consensus 84 ~IGIIG-GmGp~AT~~f~~kI~~~~~~------~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~ 156 (376)
+|||++ |+|.++. ++.|.+..+. .|+.+.|+ + +.+ |+++.+.+.
T Consensus 2 ~igvfDSG~GGltv---~~~l~~~lP~~~~iy~~D~~~~Py----------------------g--~~s--~~~i~~~~~ 52 (255)
T 2jfz_A 2 KIGVFDSGVGGFSV---LKSLLKARLFDEIIYYGDSARVPY----------------------G--TKD--PTTIKQFGL 52 (255)
T ss_dssp EEEEEESSSTTHHH---HHHHHHTTCCSEEEEEECTTTCCC----------------------T--TSC--HHHHHHHHH
T ss_pred cEEEEECCccHHHH---HHHHHHHCCCCCEEEEeCCCCCCC----------------------C--CCC--HHHHHHHHH
Confidence 699999 9999998 7777776653 34444443 2 223 488999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-hHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHH
Q 017159 157 HKRAFLEQAGARCIVMPCHISHA-WHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQE 235 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~ 235 (376)
+.+++|++.|||+|||||||+|. +++++++.+++||+||++++++.+..... ..++|||||||++|+++++|++
T Consensus 53 ~~~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvigii~~av~~A~~~~~-----~~~~rigVlaT~~T~~~~~y~~ 127 (255)
T 2jfz_A 53 EALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVE-----DKNAPILVLGTKATIQSNAYDN 127 (255)
T ss_dssp HHHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEECSSHHHHHHHHHHCC-----CTTSCEEEEECHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHHHhhc-----CCCCEEEEEECHHHHhChHHHH
Confidence 99999999999999999999996 79999999999999988888877765300 1235999999999999999999
Q ss_pred HHHhcCCceeecCccccccchHHHHHHHhcCCh--HHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCC---C----
Q 017159 236 KLQNQGFEVVLPDKATMEHVIIPTIEALNHRDM--EGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDD---P---- 306 (376)
Q Consensus 236 ~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~--~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~---~---- 306 (376)
.++++|...+.+ ..+.. +++ .++.|.. +..++.+.++++. .+.|+|+|||||||||++.+... +
T Consensus 128 ~l~~~g~~~v~~-~~~~~--lv~---~ie~g~~~~~~~~~~l~~~~~~-~~~~~d~iILGCTh~p~l~~~i~~~~~~~~~ 200 (255)
T 2jfz_A 128 ALKQQGYLNISH-LATSL--FVP---LIEESILEGELLETCMHYYFTP-LEILPEVIILGCTHFPLIAQKIEGYFMGHFA 200 (255)
T ss_dssp HHHHTTCCCEEE-EECTT--HHH---HHHTTCCSSHHHHHHHHHHHTT-CCSCCSEEEEESTTGGGGHHHHHHHHHHHSC
T ss_pred HHHHcCCCEEEe-cChHH--HHH---HHHhcccCCHHHHHHHHHHHhh-hcCCCCEEEEcCcChHHHHHHHHHHhCcccc
Confidence 999999433333 34443 544 4445654 3467778888777 66799999999999999865532 1
Q ss_pred --CCCeeeehHHHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHHHHHHHHHHhh
Q 017159 307 --LLKKCIDPMDALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQFKQLWKILFS 365 (376)
Q Consensus 307 --~~vpvIDp~~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 365 (376)
.++|+|||.+++|+++++++..... + ... ....++.|++...|+.+.++||+
T Consensus 201 ~~~~v~viDs~~~~a~~~~~~l~~~~~--~--~~~---~~~~~~~t~~~~~~~~~~~~~~~ 254 (255)
T 2jfz_A 201 LPTPPLLIHSGDAIVEYLQQKYALKNN--A--CTF---PKVEFHASGDVIWLERQAKEWLK 254 (255)
T ss_dssp CSSCCEEEEHHHHHHHHHHHHTTCCSC--S--CSS---CEEEEEESSCHHHHHHHHHHHHC
T ss_pred CCCCCEEECcHHHHHHHHHHHHHhccc--c--CCC---CCEEEEECCCHHHHHHHHHHHhC
Confidence 3489999999999999998865442 1 111 23568899999999999999885
No 17
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=99.90 E-value=7.1e-24 Score=200.20 Aligned_cols=166 Identities=13% Similarity=0.066 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 147 IRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 147 ~~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
+|......+.+.++.+++.|+|+|||+|||+|.+ +++|+.+++||+||++++++.+...| +|||||+|.+
T Consensus 50 d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~~~l-~~lr~~~~iPvigi~e~~~~~a~~~~---------~rigVlaT~~ 119 (245)
T 3qvl_A 50 DEAIAAVGVLEQIRAGREQGVDGHVIASFGDPGL-LAARELAQGPVIGIAEAAMHMATMVA---------TRFSIVTTLP 119 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEC-CCCTTH-HHHHHHCSSCEEEHHHHHHHHHHHHC---------SCEEEEESCG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHH-HHHHHHcCCCEECccHHHHHHHHHcC---------CEEEEEEcch
Confidence 4577777788888899999999999999999986 99999999999999999998887754 4899999999
Q ss_pred hhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHH-hhCCCCEEEECCCccccccCCCC
Q 017159 227 TLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLL-LVRAVNAVIIGSDEMQGVLPKDD 305 (376)
Q Consensus 227 T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L-~~~gaDaVILGCTElpll~~~~~ 305 (376)
|+. +.|++.++++|.+..+....+..-.. .++. ++.++..+.+.+....+ .++|+|+|||||||||++.+...
T Consensus 120 t~~-~~~~~~l~~~g~~~~~~~v~~~~~~~----~~l~-~~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~ 193 (245)
T 3qvl_A 120 RTL-IIARHLLHQYGFHQHCAALHAIDLPV----LALE-DGSGLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLT 193 (245)
T ss_dssp GGH-HHHHHHHHHHTCGGGEEEEEECCSCG----GGGG-SSSSHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHH
T ss_pred hHH-HHHHHHHHHcCCCCeEEEEeCCCCCH----HHHc-CCcHHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHH
Confidence 986 89999999999886543222211001 1122 22234555666555554 45899999999999998875432
Q ss_pred -CCCCeeeehHHHHHHHHHHHHHh
Q 017159 306 -PLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 306 -~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
..++|+|||..+.++.+..++..
T Consensus 194 ~~~gVpvID~~~a~~~~~~~l~~~ 217 (245)
T 3qvl_A 194 RELRVPVIDGVSAAVKMVESLVAL 217 (245)
T ss_dssp HHHTSCEECHHHHHHHHHHHHHHT
T ss_pred HHcCCeEEccHHHHHHHHHHHHhC
Confidence 23489999999999998888653
No 18
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.5e-23 Score=194.30 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
....+.+.+.+++|++.|+|+|+|+|||+ ++++++++.+++||+||++++++.+...| +|||||+|.+|+
T Consensus 58 ~~~~~~l~~~~~~l~~~g~d~iviaCnta-~~~~~l~~~~~iPvi~i~~~~~~~a~~~~---------~rigVlat~~t~ 127 (228)
T 2eq5_A 58 REAEPKIIRLAKEFEREGVDAIIISCAAD-PAVEKVRKLLSIPVIGAGSSVSALALAYG---------RRVGVLNLTEET 127 (228)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECSTTC-TTHHHHHHHCSSCEEEHHHHHHHHHHTTC---------SSEEEECSSSCC
T ss_pred HHhHHHHHHHHHHHHHCCCCEEEEeCCch-HHHHHHHHhCCCCEeCccHHHHHHHHHhC---------CeEEEEecCccc
Confidence 44555677888899999999999999999 88999999999999999999998876533 499999999999
Q ss_pred chHHHHHHH-HhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccc--cccCCCC
Q 017159 229 SAGFYQEKL-QNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQ--GVLPKDD 305 (376)
Q Consensus 229 ~s~~Y~~~L-~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElp--ll~~~~~ 305 (376)
.+ .|++.+ +++|.++..+... . ++++. . +...+.+.++++.+.++|+|+||||||||| ++.+...
T Consensus 128 ~~-~~~~~~~~~~g~~~~~~~~~--~------v~~~~--~-~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~t~~~~~~i~ 195 (228)
T 2eq5_A 128 PK-VIRSILGNNLIAEDHPSGVS--N------TLDLL--T-DWGRREVINAAKRLKEKGVEVIALGCTGMSTIGIAPVLE 195 (228)
T ss_dssp CH-HHHHHHGGGEEEEECCTTCC--S------GGGGG--S-HHHHHHHHHHHHHHHHTTCSEEEECCTHHHHHTCHHHHH
T ss_pred HH-HHHHHHHHHhCccccCCcee--e------HHHhc--C-hHHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHH
Confidence 95 799999 9999887554421 1 11222 1 346778888889898889999999999999 7765432
Q ss_pred -CCCCeeeehHHHHHHHHHHHHHhcc
Q 017159 306 -PLLKKCIDPMDALARSTVTWARSNK 330 (376)
Q Consensus 306 -~~~vpvIDp~~~lA~a~v~~a~~~~ 330 (376)
..++|+|||.+++++.+.+++....
T Consensus 196 ~~~~vpvids~~~~a~~~~~~l~~~~ 221 (228)
T 2eq5_A 196 EEVGIPVIDPVIASGAVALHALKRRE 221 (228)
T ss_dssp HHHSSCEECHHHHHHHHHHHHHHTC-
T ss_pred HHcCCCEEchHHHHHHHHHHHHhcCC
Confidence 2358999999999999999887654
No 19
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=99.89 E-value=4e-24 Score=204.80 Aligned_cols=211 Identities=12% Similarity=0.074 Sum_probs=148.3
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcc-hHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDH-IRGAVSQNLRHKRA 160 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~-~~~~i~~~l~~~~~ 160 (376)
.++||+|+++++.++..++.++.... . .+.+.+.+ +.++. .+ .+. ....+.+.+.+.++
T Consensus 25 ~~rIGlI~p~s~~s~e~~~~~~~~~~-~----~~~~~~~~-ar~~~----~~----------v~~~~l~~~~~~l~~aa~ 84 (273)
T 2xed_A 25 IRRIGLVVPSSNVTVETEMPALLSRH-P----GAEFSFHS-TRMRM----HT----------VSPEGLAAMNAQRERCVL 84 (273)
T ss_dssp SEEEEEEEETTCCSHHHHHHHHHTTC-S----SCCEEEEE-EEECC----CB----------CSHHHHHHHHTTHHHHHH
T ss_pred CCEEEEEECCCchhHHHHHHHHhccc-c----cCCeEEEE-eCCcc----CC----------CCHHHHHHHHHHHHHHHH
Confidence 46899999999999988876664311 0 00121111 11110 00 111 00233444677889
Q ss_pred HHHHcCCcEEEEeCCCchhhH---------HHHhccC-----CCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 161 FLEQAGARCIVMPCHISHAWH---------GDVSEGC-----SIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~---------d~L~~~~-----~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
.|+++|+|+|+++|||+|.++ ++|++.+ ++|+++++++++++++..|. +||||++|-.
T Consensus 85 ~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~~~A~~~al~~~g~--------~rvgvltp~~ 156 (273)
T 2xed_A 85 EIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDA--------QRVALVTPYM 156 (273)
T ss_dssp HHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEHHHHHHHHHHHTTC--------CEEEEEECSC
T ss_pred HHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecHHHHHHHHHHHcCC--------CeEEEEcCCh
Confidence 999999999999999999875 9999999 99999999999999887664 3999996544
Q ss_pred hhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC-CCccccc--cCC
Q 017159 227 TLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG-SDEMQGV--LPK 303 (376)
Q Consensus 227 T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG-CTElpll--~~~ 303 (376)
+..+++|++.++++|++++.+....... +++.|..+ .+.+.++++.+.+.|+|+|||| |||||.+ .+.
T Consensus 157 ~~~~~~~~~~l~~~Gi~v~~~~~~~~~~-------~~~~g~~~--~~~l~~~~~~l~~~gadaIvLg~CT~l~~~~~~~~ 227 (273)
T 2xed_A 157 RPLAEKVVAYLEAEGFTISDWRALEVAD-------NTEVGCIP--GEQVMAAARSLDLSEVDALVISCAVQMPSLPLVET 227 (273)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCCB-------HHHHHTCC--HHHHHHHHHHSCCTTCSEEEEESSSSSCCTTHHHH
T ss_pred hhhHHHHHHHHHHCCCEEeccccCCCcc-------chhhcccC--HHHHHHHHHHHhhCCCCEEEEcCCCCcchHHhHHH
Confidence 3357799999999999998876543321 22223322 2456777777877899999999 9999985 232
Q ss_pred C-CCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 304 D-DPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 304 ~-~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
. ...++||||+.+++++++++.+...
T Consensus 228 le~~lg~PVids~~a~a~~~l~~~g~~ 254 (273)
T 2xed_A 228 AEREFGIPVLSAATAGAYSILRSLDLP 254 (273)
T ss_dssp HHHHHSSCEEEHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCEEcHHHHHHHHHHHHcCCC
Confidence 1 2235899999999999999877543
No 20
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=99.89 E-value=3.3e-24 Score=198.58 Aligned_cols=200 Identities=14% Similarity=0.058 Sum_probs=141.5
Q ss_pred eEEEEcCCChHHHHH-HHHHHHHHhhhCCCCCCCeEeecCCcc-hhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 84 TIGIIGGVSVSSTLN-FLGKLVWYSAKDAEECPPFVVCNDPAL-NEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 84 ~IGIIGGmGp~AT~~-f~~kI~~~~~~~dq~~~p~il~s~p~i-pd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
+||+|+++++.++.. |++.+.+ .+-+.+ +.+ + .++ .-...+..+.+.+.+.++.
T Consensus 7 ~IG~i~p~s~~~~e~~~~~~~~~----------~v~~~~-~r~~~----~~~---------~~~~~~~~~~~~l~~~a~~ 62 (223)
T 2dgd_A 7 RIGVILPANNAGMEYDLWKMAPE----------GVSIHS-TRMKP----TKG---------CEPENVEEFEKELKYSYSL 62 (223)
T ss_dssp EEEEEEETTCCSHHHHHHHHCCT----------TEEEEE-EEECC----CSS---------SSCSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHccC----------CeEEEE-Eeeec----CCC---------CCHHHHHHHHHHHHHHHHH
Confidence 899999999999988 4444311 111111 111 0 001 0011235677778889999
Q ss_pred HHHcCCcEEEEeCCCchhhH----HHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHH
Q 017159 162 LEQAGARCIVMPCHISHAWH----GDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKL 237 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~~----d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L 237 (376)
|+++ +|+|+++|||+|.++ +++++.+++| +++++++++..|. +|||||+|..+..+++|++.+
T Consensus 63 L~~~-~d~ivi~Cnt~~~~~g~~~~~l~~~~~iP----~~a~~~a~~~~g~--------~rvgvlt~~~~~~~~~~~~~l 129 (223)
T 2dgd_A 63 LAEV-SDIIIYGRTYGTHKHAHVIKRVIKDVVIP----EESVYELLKKLNV--------RKLWIGTPYIKERTLEEVEWW 129 (223)
T ss_dssp HTTT-CSEEEECCCTTTTTCHHHHHHHSTTCBCH----HHHHHHHHHHTTC--------CEEEEEESSCHHHHHHHHHHH
T ss_pred hhcc-CCEEEEcCCHHHHhhhHHHHHHHHhcCCC----HHHHHHHHHHcCC--------CeEEEEeCCchHHHHHHHHHH
Confidence 9999 999999999999876 9999999999 7888888877654 399999654444477999999
Q ss_pred HhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhC--CCCEEEECCCccccc--cCCC-CCCCCeee
Q 017159 238 QNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVR--AVNAVIIGSDEMQGV--LPKD-DPLLKKCI 312 (376)
Q Consensus 238 ~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~--gaDaVILGCTElpll--~~~~-~~~~vpvI 312 (376)
+++|++++.|....+.. .++.|..+ .+.+.++++.+.+. |+|+|||||||||++ .+.. ...++|+|
T Consensus 130 ~~~G~~v~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~l~~~~~gadaIvLgCT~l~~~~~~~~l~~~~g~PVi 200 (223)
T 2dgd_A 130 RNKGFEIVGYDGLGKIR-------GIDISNTP--IFTIYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVV 200 (223)
T ss_dssp HTTTCEEEEEEECCCCS-------HHHHHTCC--HHHHHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEE
T ss_pred HhCCcEEecccCCCCCC-------cchhhccC--HHHHHHHHHHHhcccCCCCEEEEeCCcccHHHHHHHHHHHhCCCEE
Confidence 99999998886543321 22233332 23356666666666 999999999999985 3322 12357999
Q ss_pred ehHHHHHHHHHHHHHhc
Q 017159 313 DPMDALARSTVTWARSN 329 (376)
Q Consensus 313 Dp~~~lA~a~v~~a~~~ 329 (376)
|+.+++++++++.+...
T Consensus 201 ds~~~~a~~~l~~~g~~ 217 (223)
T 2dgd_A 201 SENAAAMWEALNKLKIK 217 (223)
T ss_dssp EHHHHHHHHHHHHHTCC
T ss_pred EhHHHHHHHHHHHcCCC
Confidence 99999999999987544
No 21
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=99.88 E-value=4.2e-23 Score=194.25 Aligned_cols=163 Identities=11% Similarity=0.089 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhh---------HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHISHAW---------HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~---------~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
+.+.+.+.++.|+++|+|+|+++|||+|.+ .++|++.+++|++|++++++++++..|.+ ||||
T Consensus 51 ~~~~l~~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~~~A~~~al~~~g~~--------rvgl 122 (240)
T 3ixl_A 51 VIESVVDHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVR--------RVAL 122 (240)
T ss_dssp HGGGHHHHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEHHHHHHHHHHHTTCS--------EEEE
T ss_pred HHHHHHHHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECHHHHHHHHHHHhCCC--------EEEE
Confidence 333478889999999999999999999974 59999999999999999999999998764 9999
Q ss_pred eecchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHH-H-hhCCCCEEEECCCcccc
Q 017159 222 LATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQL-L-LVRAVNAVIIGSDEMQG 299 (376)
Q Consensus 222 LaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~-L-~~~gaDaVILGCTElpl 299 (376)
++|-.+..+++|++.|+++|++++.|....... +++.|.. ..+.+.++++. + ...|+|+|||||||||.
T Consensus 123 ltpy~~~~~~~~~~~l~~~Giev~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~l~~~~~adaivL~CT~l~~ 193 (240)
T 3ixl_A 123 ATAYIDDVNERLAAFLAEESLVPTGCRSLGITG-------VEAMARV--DTATLVDLCVRAFEAAPDSDGILLSSGGLLT 193 (240)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEECCCCC-------HHHHHTC--CHHHHHHHHHHHHHTSTTCSEEEEECTTSCC
T ss_pred EeCChHHHHHHHHHHHHHCCCEEeccccCCCCC-------cchhhcC--CHHHHHHHHHHHhhcCCCCCEEEEeCCCCch
Confidence 988444448899999999999999886543321 1222333 23456777777 7 67899999999999998
Q ss_pred cc--CC-CCCCCCeeeehHHHHHHHHHHHHHhcc
Q 017159 300 VL--PK-DDPLLKKCIDPMDALARSTVTWARSNK 330 (376)
Q Consensus 300 l~--~~-~~~~~vpvIDp~~~lA~a~v~~a~~~~ 330 (376)
+. +. ....++|+||+++++++++++.++...
T Consensus 194 l~~i~~le~~lg~PVids~~a~~w~~lr~~g~~~ 227 (240)
T 3ixl_A 194 LDAIPEVERRLGVPVVSSSPAGFWDAVRLAGGGA 227 (240)
T ss_dssp TTHHHHHHHHHSSCEEEHHHHHHHHHHHHTTSCC
T ss_pred hhhHHHHHHHhCCCEEeHHHHHHHHHHHHcCCCC
Confidence 74 32 223457999999999999999987654
No 22
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=96.28 E-value=0.023 Score=53.59 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=67.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
+.++|||||--+.... .+|++..+.... ...++....|.+- +..+.+ ..+. ++..+.+.+.++
T Consensus 109 ~~~rIgVlaT~~T~~s-~~y~~~i~~~~~----~~~v~~~~~~~~v--------~~ve~g--~~~~--~~~~~~l~~~l~ 171 (272)
T 1zuw_A 109 DNQHIGVIGTENTIKS-NAYEEALLALNP----DLKVENLACPLLV--------PFVESG--KFLD--QTADEIVKTSLY 171 (272)
T ss_dssp SSSEEEEEECHHHHHT-THHHHHHHHHCT----TCEEEEEECTTHH--------HHHTSC--CCCH--HHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhh-hHHHHHHHHhCC----CCEEEeccCHHHH--------HHHHCC--CCCC--HHHHHHHHHHHH
Confidence 4689999984333333 356655554311 1223222333321 111111 2222 445566777778
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccC--CCCeeccHHHHHHHHHH
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGC--SIPFLHVGECVAKELKE 205 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~--~vPvl~Iveat~~~~~~ 205 (376)
.|.+.|+|.||+.|.-...+.+.+++.+ ++|+++-.+++++.+.+
T Consensus 172 ~l~~~~~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~~a~~~~~ 218 (272)
T 1zuw_A 172 PLKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIISSGDETAREVST 218 (272)
T ss_dssp HHHHSCCSEEEEESTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred HHHhcCCCEEEECccCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence 8888899999999976666688888766 89999999998887654
No 23
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=96.26 E-value=0.029 Score=52.63 Aligned_cols=109 Identities=12% Similarity=0.169 Sum_probs=68.5
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
+.++|||+|--+.... .+|++..+.... ...++....|.+-. ..+.+ ..+. ++..+.+.+.++
T Consensus 108 ~~~rIgVlaT~~T~~~-~~y~~~l~~~~~----g~~v~~~~~~~~v~--------~ie~g--~~~~--~~~~~~l~~~~~ 170 (267)
T 2gzm_A 108 NTYHVGIIGTIGTVKS-GAYEEALKSINN----RVMVESLACPPFVE--------LVESG--NFES--EMAYEVVRETLQ 170 (267)
T ss_dssp SSCEEEEEECHHHHHH-THHHHHHHHHCT----TCEEEEEECTTHHH--------HHHTT--CSSS--HHHHHHHHHHHH
T ss_pred CCCEEEEEEChHHhcc-HHHHHHHHHhCC----CCEEeccCCHHHHH--------HHhCC--CCCC--HHHHHHHHHHHH
Confidence 4689999974334333 366666654321 12233223333211 11111 2222 445566777777
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccC--CCCeeccHHHHHHHHHHh
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGC--SIPFLHVGECVAKELKEA 206 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~--~vPvl~Iveat~~~~~~~ 206 (376)
.|.+.|+|.||+.|.-...+.+++++.+ ++|+++-.+++++++.+.
T Consensus 171 ~l~~~~~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~~a~~~~~~ 218 (267)
T 2gzm_A 171 PLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETAREVSTI 218 (267)
T ss_dssp HHHHSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEcccChHHHHHHHHHHcCCCCEEECcHHHHHHHHHHH
Confidence 7888899999999977666688898776 899999999998776653
No 24
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=96.16 E-value=0.025 Score=53.32 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=67.8
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
+.++|||||--+.... .+|++..+.... ...++-...|.+-+ ..+.+ ..+. ++..+.+.+.++
T Consensus 112 ~~~rIgVlaT~~T~~s-~~y~~~i~~~~~----~~~v~~~~~~~~v~--------~ve~g--~~~~--~~~~~~l~~~l~ 174 (276)
T 2dwu_A 112 KKGKIGVIGTVGTIQS-NMYEKALHELDT----YLKVHSHACPTLAT--------VVENR--LEDT--AYVTQQVKQALL 174 (276)
T ss_dssp SSSEEEEEECHHHHHT-THHHHHHHHHCT----TCEEEEEECTTHHH--------HHHHS--TTCH--HHHHHHHHHHHH
T ss_pred CCCeEEEEeChhhhhh-HHHHHHHHHhCC----CCEEEeeeCHHHHH--------HHHcC--CcCC--HHHHHHHHHHHH
Confidence 4679999974333333 266666554311 12232223333211 11111 1222 445566777777
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccC--CCCeeccHHHHHHHHHHh
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGC--SIPFLHVGECVAKELKEA 206 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~--~vPvl~Iveat~~~~~~~ 206 (376)
.|.+.|+|.||+.|.-...+.+.+++.+ ++|+|+-.+++++.+.+.
T Consensus 175 ~l~~~~~D~IVLGCTh~p~l~~~i~~~~~~~v~vIDs~~~~a~~~~~~ 222 (276)
T 2dwu_A 175 PLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELSTI 222 (276)
T ss_dssp HHHTSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCCCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHHH
Confidence 7888899999999987666688898876 899999999998876653
No 25
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=96.15 E-value=0.023 Score=53.96 Aligned_cols=109 Identities=6% Similarity=0.050 Sum_probs=67.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHH-HHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAV-SQNLRHKR 159 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i-~~~l~~~~ 159 (376)
+.++|||||--+.... .+|++..+.... ...++....|.+-+ ..+.+ ..+. ++. .+.+.+.+
T Consensus 127 ~~~rIgVLaT~~T~~~-~~y~~~l~~~~~----~~~v~~~~~~~~v~--------~ie~g--~~~~--~~~~~~~l~~~~ 189 (286)
T 2jfq_A 127 RNQNVLVLGTEGTIKS-EAYRTHIKRINP----HVEVHGVACPGFVP--------LVEQM--RYSD--PTITSIVIHQTL 189 (286)
T ss_dssp SSSEEEEEECHHHHHH-THHHHHHHHHCT----TCEEEEEECTTHHH--------HHHTT--CTTC--HHHHHHHHHHHH
T ss_pred CCCEEEEEeChHHhcc-hHHHHHHHHhCC----CCEEEecCCHHHHH--------HHHcC--CCCC--chhHHHHHHHHH
Confidence 4679999983333333 356665554311 12232223333211 11111 2222 344 55677777
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccC--CCCeeccHHHHHHHHHHh
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGC--SIPFLHVGECVAKELKEA 206 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~--~vPvl~Iveat~~~~~~~ 206 (376)
+.|.+.|+|.||+.|.-...+.+++++.+ ++|+|+-.+++++++.+.
T Consensus 190 ~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a~a~~~~~~ 238 (286)
T 2jfq_A 190 KRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSAL 238 (286)
T ss_dssp GGGTTCSCSEEEEESSSGGGGHHHHHHHTTTCSEEEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEcCcCHHHHHHHHHHHcCCCCEEECcHHHHHHHHHHH
Confidence 77777899999999977666688898877 899999999998876653
No 26
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=95.93 E-value=0.02 Score=53.28 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHH-HHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHh
Q 017159 150 AVSQNLRHKRAF-LEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEA 206 (376)
Q Consensus 150 ~i~~~l~~~~~~-L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~ 206 (376)
+..+.+.+.+.. +++.|+|+||+.|.-...+.+.|++.+++|||+-.+++++.+...
T Consensus 157 ~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~~~~gVpvID~~~a~~~~~~~l 214 (245)
T 3qvl_A 157 LAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLTRELRVPVIDGVSAAVKMVESL 214 (245)
T ss_dssp HHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHHHHHTSCEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHcCCeEEccHHHHHHHHHHH
Confidence 344445554444 456899999999976655688999999999999999998887664
No 27
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=95.70 E-value=0.017 Score=53.13 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=66.8
Q ss_pred ceEEEeecchhhch-HHHHHHHHhc----C----CceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCC
Q 017159 217 VRIGVLATDATLSA-GFYQEKLQNQ----G----FEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAV 287 (376)
Q Consensus 217 ~rVGlLaT~~T~~s-~~Y~~~L~~~----G----~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~ga 287 (376)
|+|||||-=+...+ .+|++..+.. | ..++.-+.+ +.++.+.+..|+.++....+.+.++.|.+.|+
T Consensus 3 k~iGilGGmg~~at~~~~~~i~~~~~~~~~~~h~~~~~~~s~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~g~ 77 (231)
T 3ojc_A 3 KILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVD-----FHEIEQLQAKGDWQTAAQLLSNAAISLKHAGA 77 (231)
T ss_dssp CCEEEEECTTHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEECC-----HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CeEEEEccCCHHHHHHHHHHHHHHhHHhcCCCCCccceeeCCC-----hhhHHHHHHCCChhHHHHHHHHHHHHHHhcCC
Confidence 38999997666665 5566554331 2 122222211 21212334557777778888999999998999
Q ss_pred CEEEECCCccccccCCC-CCCCCeeeehHHHHHHHHHH
Q 017159 288 NAVIIGSDEMQGVLPKD-DPLLKKCIDPMDALARSTVT 324 (376)
Q Consensus 288 DaVILGCTElpll~~~~-~~~~vpvIDp~~~lA~a~v~ 324 (376)
|.||++|.=.....+.. ...++|+|...+..++++.+
T Consensus 78 ~~iviaCNTa~~~~~~l~~~~~iPvi~i~~~~~~~a~~ 115 (231)
T 3ojc_A 78 EVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQ 115 (231)
T ss_dssp CEEEECSSGGGGGHHHHHHHHCSCBCCHHHHHHHHHHH
T ss_pred CEEEEeCCchHHHHHHHHHhCCCCEeccHHHHHHHHHH
Confidence 99999997665554332 12357999988888887765
No 28
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=95.69 E-value=0.34 Score=44.94 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=49.4
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH-----------------------------HHHHHHHHHh--
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG-----------------------------ECVAKELKEA-- 206 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv-----------------------------eat~~~~~~~-- 206 (376)
.++.|.+.++|.|++....+...+. ....++|++-+. ..+++.+.+.
T Consensus 61 ~~~~l~~~~vDgII~~~~~~~~~~~--~~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~~~~~~~~~~l~~~~P 138 (302)
T 2qh8_A 61 IARQFVGENPDVLVGIATPTAQALV--SATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILP 138 (302)
T ss_dssp HHHHHHHTCCSEEEEESHHHHHHHH--HHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCCCHHHHHHHHHHHST
T ss_pred HHHHHHhCCCCEEEECChHHHHHHH--hcCCCcCEEEEecCCHhhcCccccccCCCCCEEEEECCcCHHHHHHHHHHhCC
Confidence 3456778899999876532221222 224577876431 2345777776
Q ss_pred cCCCCcCCCCceEEEeecchhh----chHHHHHHHHhcCCceee
Q 017159 207 KLKPLEAGSGVRIGVLATDATL----SAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 207 g~k~~~~~~~~rVGlLaT~~T~----~s~~Y~~~L~~~G~evv~ 246 (376)
|++ |||+++.+... +..-|++.++++|+++..
T Consensus 139 g~~--------~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~ 174 (302)
T 2qh8_A 139 NVK--------SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVE 174 (302)
T ss_dssp TCC--------EEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCc--------EEEEEecCCCcchHHHHHHHHHHHHHcCCEEEE
Confidence 664 99999865421 223488889999998753
No 29
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=95.68 E-value=0.052 Score=51.19 Aligned_cols=110 Identities=8% Similarity=0.085 Sum_probs=67.9
Q ss_pred ccCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 80 NQANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 80 ~~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
.+.++|||||=-|...+ .+|++..+.... ...+.....|.+-+ ..+.+ ..+. ++..+.+.+.+
T Consensus 109 ~~~~~IGVLaT~~Ti~s-~~y~~~l~~~~~----~~~V~~~~~~~lV~--------~vE~g--~~~~--~~~~~~l~~~l 171 (268)
T 3out_A 109 DNLNTVGVIATPATINS-NAYALQIHKKNP----NIEVYSNPCGLFVS--------MIEEG--FVSG--HIVELVAKEYL 171 (268)
T ss_dssp TTCSEEEEEECHHHHHH-THHHHHHHHHCT----TSEEEEEECTTHHH--------HHHTT--CCSS--HHHHHHHHHHH
T ss_pred ccCCeEEEEecCccccc-HHHHHHHHHhCC----CCEEecCCChHHHH--------HHHcC--CcCC--HHHHHHHHHHH
Confidence 35689999983332222 477776654321 11122222232211 11111 1222 44556677777
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHh
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEA 206 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~ 206 (376)
+.|.+.|+|.||+.|.-.-.+.+.+++..++|+++-.+++++.+.+.
T Consensus 172 ~~l~~~g~D~iILGCTh~pll~~~i~~~~~v~viD~~~~~a~~~~~~ 218 (268)
T 3out_A 172 SYFHDKNIQALILGCTHYPIIKESIAKILDVKLIDPSLQASKMLYSL 218 (268)
T ss_dssp GGGTTSCCSEEEECSTTGGGGHHHHHHHCCSEEECCHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEECCCChHHHHHHHhcCCCCceechHHHHHHHHHHH
Confidence 77888899999999976555588888888999999999998887663
No 30
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=95.65 E-value=0.026 Score=53.76 Aligned_cols=108 Identities=13% Similarity=0.164 Sum_probs=67.1
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
+.++|||||--+.... .+|++..+.... ...++-...|.+-+ ..+.+ ..+. ++..+.+.+.++
T Consensus 129 ~~~rIgVLaT~~T~~s-~~y~~~l~~~~~----~~~v~~~~~~~lv~--------~ve~g--~~~~--~~~~~~l~~~l~ 191 (290)
T 2vvt_A 129 KNNKIGVIGTLGTIKS-ASYEIAIKSKAP----AIEVTSLACPKFVP--------IVESN--QYRS--SVAKKIVAETLQ 191 (290)
T ss_dssp SSSEEEEEECHHHHHT-THHHHHHHTTCT----TSEEEEEECTTHHH--------HHHTT--CTTS--HHHHHHHHHHHG
T ss_pred CCCEEEEEeCcHhhhh-HHHHHHHHHhCC----CCEEEeccCHHHHH--------HHHcC--CCCC--HHHHHHHHHHHH
Confidence 4679999974333333 367766654311 12232223333221 11111 1222 445566777777
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccC--CCCeeccHHHHHHHHHH
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGC--SIPFLHVGECVAKELKE 205 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~--~vPvl~Iveat~~~~~~ 205 (376)
.|.+.|+|.||+.|.-.-.+.+.+++.+ ++|+|+-.+++++.+.+
T Consensus 192 ~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a~a~~~~~ 238 (290)
T 2vvt_A 192 ALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSM 238 (290)
T ss_dssp GGTTSCCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHHHHHHHHH
T ss_pred HHHhCCCCEEEECCcCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence 7877899999999976666688898876 89999999998887665
No 31
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=95.48 E-value=0.56 Score=42.74 Aligned_cols=157 Identities=15% Similarity=0.213 Sum_probs=85.2
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+.+.++|.|++..... ...++.++ .++|++-+ ...+++++.+.|.+ |
T Consensus 57 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~--~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 126 (285)
T 3c3k_A 57 LTLLSGKMVDGVITMDALSELPELQNII--GAFPWVQCAEYDPLSTVSSVSIDDVAASEYVVDQLVKSGKK--------R 126 (285)
T ss_dssp THHHHTTCCSEEEECCCGGGHHHHHHHH--TTSSEEEESSCCTTSSSCEEECCHHHHHHHHHHHHHHTTCC--------C
T ss_pred HHHHHhCCCCEEEEeCCCCChHHHHHHh--cCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHcCCC--------e
Confidence 3456678999988865432 34466665 56776643 23456667776654 8
Q ss_pred EEEeecchh---h--chHHHHHHHHhcCCcee-ecCccccccchHHHHHH--H-hcC-ChHH----HHHHHHHHHHHHhh
Q 017159 219 IGVLATDAT---L--SAGFYQEKLQNQGFEVV-LPDKATMEHVIIPTIEA--L-NHR-DMEG----ARNLLRIGIQLLLV 284 (376)
Q Consensus 219 VGlLaT~~T---~--~s~~Y~~~L~~~G~evv-~p~~~~q~~~l~~~ie~--l-k~G-~~~~----a~~~l~~~i~~L~~ 284 (376)
|++++.+.. . +..-|.+.++++|+++. .......+. ....++. + +.+ ..+. .......+++.+.+
T Consensus 127 I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~ 205 (285)
T 3c3k_A 127 IALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAENLDY-MAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTE 205 (285)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSH-HHHHHHHHHHHSSSSCCSEEEESSHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccHHHHHHHHHHHHHHcCCCceEeecCCChHH-HHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHHHH
Confidence 999986532 1 12337888888887653 221111111 1222333 3 322 2211 12223344455555
Q ss_pred CC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 285 RA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 285 ~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.| -|.-|.|+...+... ...+. +..|+ +...+++.+++.+..
T Consensus 206 ~g~~vP~di~vvg~d~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~ 252 (285)
T 3c3k_A 206 SGLSIPQDVAVVGFDGVDISQ-ITVPA-LTTVQQPSEQIGMKAVSLLLE 252 (285)
T ss_dssp TTCCTTTTCEEECSBCCGGGG-TSSSC-CBEEECCHHHHHHHHHHHHHH
T ss_pred cCCCCCCceEEEEeCChHHHh-hcCCC-ceEEeCCHHHHHHHHHHHHHH
Confidence 55 378899999888542 22222 23343 456677777776654
No 32
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=95.47 E-value=0.51 Score=43.33 Aligned_cols=210 Identities=10% Similarity=0.046 Sum_probs=108.6
Q ss_pred cCCeEEEEcCCC--hHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHH
Q 017159 81 QANTIGIIGGVS--VSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRH 157 (376)
Q Consensus 81 ~~k~IGIIGGmG--p~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~ 157 (376)
+.++||++=... +..+-.||..+.+... ...+....+++++.. .+. +. -.+
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~--------------------~~~--~~----~~~ 59 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSN--------------------NMN--DL----MDE 59 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCC--------------------SHH--HH----HHH
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCC--------------------CCh--HH----HHH
Confidence 467899994221 4455568888887764 222223444443311 010 11 122
Q ss_pred HHHHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc---------------------HHHHHHHHHHhcCCCCcCCC
Q 017159 158 KRAFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV---------------------GECVAKELKEAKLKPLEAGS 215 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I---------------------veat~~~~~~~g~k~~~~~~ 215 (376)
..+.|.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|.+
T Consensus 60 ~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~------ 132 (295)
T 3hcw_A 60 VYKMIKQRMVDAFILLYSKENDPIKQMLID-ESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIEQGVD------ 132 (295)
T ss_dssp HHHHHHTTCCSEEEESCCCTTCHHHHHHHH-TTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHHHCCS------
T ss_pred HHHHHHhCCcCEEEEcCcccChHHHHHHHh-CCCCEEEECCCCccccCCceEEecCcHHHHHHHHHHHHHcCCc------
Confidence 3355677899988875433 2334555543 24454322 34567778888765
Q ss_pred CceEEEeecchhh-----chHHHHHHHHhcCCceeecCc-cccccchHHHHHHH-hcC----ChH----HHHHHHHHHHH
Q 017159 216 GVRIGVLATDATL-----SAGFYQEKLQNQGFEVVLPDK-ATMEHVIIPTIEAL-NHR----DME----GARNLLRIGIQ 280 (376)
Q Consensus 216 ~~rVGlLaT~~T~-----~s~~Y~~~L~~~G~evv~p~~-~~q~~~l~~~ie~l-k~G----~~~----~a~~~l~~~i~ 280 (376)
|||+++.+... +..-|.+.++++|+++.+... ...+. ....++.+ +.. ..+ ........+++
T Consensus 133 --~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~ 209 (295)
T 3hcw_A 133 --ELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREV-ILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILS 209 (295)
T ss_dssp --EEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHH-HHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHH
T ss_pred --cEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEEeccCCHHH-HHHHHHHHHhhcccCCCCcEEEECChHHHHHHHH
Confidence 99999764321 223388889999987653211 11111 11112222 111 111 01222334445
Q ss_pred HHhhCC----CCEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHh
Q 017159 281 LLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 281 ~L~~~g----aDaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
.+.+.| -|.-|+|+.+.+...- ..+. +..| =+...+++.+++.+..
T Consensus 210 al~~~g~~vP~di~vig~D~~~~~~~-~~p~-lttv~~~~~~~g~~a~~~l~~ 260 (295)
T 3hcw_A 210 VLYELNIEIPKDVMTATFNDSYLTEI-ASPP-QTCIDIKPRMLGQQAGSAILN 260 (295)
T ss_dssp HHHHTTCCTTTTEEEEEECCSHHHHT-SSSC-CEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCceEEEEeCChhHHhh-CCCC-eeEEEECHHHHHHHHHHHHHH
Confidence 555555 4889999988875421 1221 2333 3556667777766654
No 33
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=95.15 E-value=0.067 Score=50.46 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccC--CCCeeccHHHHHHHHHH
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGC--SIPFLHVGECVAKELKE 205 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~--~vPvl~Iveat~~~~~~ 205 (376)
++..+.+.+.++.|.+.|+|.||+.|.-.-.+.+.+++.+ ++|+|+-.+++++.+.+
T Consensus 161 ~~~~~~l~~~l~~l~~~g~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~~a~~~~~ 219 (269)
T 3ist_A 161 AIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSA 219 (269)
T ss_dssp HHHHHHHHHHHGGGGGSCCCEEEECSTTGGGGHHHHHHHHCTTSEEECTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHcCCCCeEECcHHHHHHHHHH
Confidence 4555667777777888899999999975555578888765 69999999999888765
No 34
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=95.02 E-value=0.56 Score=42.80 Aligned_cols=157 Identities=12% Similarity=0.105 Sum_probs=84.6
Q ss_pred HHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 162 LEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 162 L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
+.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|.+ ||++
T Consensus 62 l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~I~~ 132 (288)
T 3gv0_A 62 LETGSADGVIISKIEPNDPRVRFMTE-RNMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQCGRK--------RIAV 132 (288)
T ss_dssp HHHTCCSEEEEESCCTTCHHHHHHHH-TTCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHHTTCC--------EEEE
T ss_pred HHcCCccEEEEecCCCCcHHHHHHhh-CCCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHHCCCC--------eEEE
Confidence 5568999988765332 234666654 36666543 34567778887764 9999
Q ss_pred eecchhh-----chHHHHHHHHhcCCceeec----CccccccchHHHHHHH-hcC-ChHH----HHHHHHHHHHHHhhCC
Q 017159 222 LATDATL-----SAGFYQEKLQNQGFEVVLP----DKATMEHVIIPTIEAL-NHR-DMEG----ARNLLRIGIQLLLVRA 286 (376)
Q Consensus 222 LaT~~T~-----~s~~Y~~~L~~~G~evv~p----~~~~q~~~l~~~ie~l-k~G-~~~~----a~~~l~~~i~~L~~~g 286 (376)
++.+... +..-|.+.++++|+++... .....+. ....++.+ +.+ ..+. .......+++.+.+.|
T Consensus 133 i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g 211 (288)
T 3gv0_A 133 IVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEK-IRDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEAAG 211 (288)
T ss_dssp ECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHH-HHHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHTTT
T ss_pred EcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHH-HHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcC
Confidence 9765321 2333888899999875422 1111111 11223332 222 1111 1223344555666655
Q ss_pred ----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 287 ----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 287 ----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
-|.-|+|+...++... ..+..-.+-=+...+++.+++.+...
T Consensus 212 ~~vP~di~vig~d~~~~~~~-~~p~lttv~~~~~~~g~~a~~~l~~~ 257 (288)
T 3gv0_A 212 VKIGEDVDIVSKQSAEFLNW-IKPQIHTVNEDIKLAGRELAKALLAR 257 (288)
T ss_dssp CCTTTSCEEEEEESSTTHHH-HCTTSEEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEecChHHHhc-cCCCceEEecCHHHHHHHHHHHHHHH
Confidence 4788999988874321 11111123334566677777776553
No 35
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=95.00 E-value=0.74 Score=41.50 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=82.2
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHH-HHhccCCCCeecc-----------------HHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHG-DVSEGCSIPFLHV-----------------GECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d-~L~~~~~vPvl~I-----------------veat~~~~~~~g~k~~~~~~~~rVG 220 (376)
++.+.+.++|.|++...+ ...++ .+++. ++|++-+ ...+++++.+.|.+ +|+
T Consensus 57 ~~~l~~~~~dgiIi~~~~-~~~~~~~l~~~-~iPvV~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~i~ 126 (277)
T 3e61_A 57 LATFVSHNCTGMISTAFN-ENIIENTLTDH-HIPFVFIDRINNEHNGISTNHFKGGQLQAEVVRKGKGK--------NVL 126 (277)
T ss_dssp HHHHHHTTCSEEEECGGG-HHHHHHHHHHC--CCEEEGGGCC---------HHHHHHHHHHHHHHTTCC--------SEE
T ss_pred HHHHHhCCCCEEEEecCC-hHHHHHHHHcC-CCCEEEEeccCCCCCeEEechHHHHHHHHHHHHHCCCC--------eEE
Confidence 345667899999887633 33456 66543 7888754 34456777777764 899
Q ss_pred Eeecchh-----hchHHHHHHHHhcCCceee--cCccccccchHHHHHHHhcC-ChH----HHHHHHHHHHHHHhhCC--
Q 017159 221 VLATDAT-----LSAGFYQEKLQNQGFEVVL--PDKATMEHVIIPTIEALNHR-DME----GARNLLRIGIQLLLVRA-- 286 (376)
Q Consensus 221 lLaT~~T-----~~s~~Y~~~L~~~G~evv~--p~~~~q~~~l~~~ie~lk~G-~~~----~a~~~l~~~i~~L~~~g-- 286 (376)
+++.+.. .+..-|.+.++++|+++.. ...... ...++.+..+ ..+ ........+++.+.+.|
T Consensus 127 ~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 202 (277)
T 3e61_A 127 IVHENLLIDAFHQRVQGIKYILDQQRIDYKMLEATLLDN----DKKFIDLIKELSIDSIICSNDLLAINVLGIVQRYHFK 202 (277)
T ss_dssp EEESCTTSHHHHHHHHHHHHHHHC---CEEEEEGGGGGS----HHHHHHHHHHHTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCCccHHHHHHHHHHHHHHcCCCccceecCCCCH----HHHHHHhhcCCCCCEEEECCcHHHHHHHHHHHHcCCC
Confidence 9975432 1223378888988887652 211111 1112222221 110 01222334445555555
Q ss_pred --CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 287 --VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 287 --aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
-|.-|+|+...+..... .+..-.+-=+...+++.+++.+...
T Consensus 203 vP~di~vig~d~~~~~~~~-~p~lttv~~~~~~~g~~av~~l~~~ 246 (277)
T 3e61_A 203 VPAEIQIIGYDNIPFSEMT-YPQITTIDQSAYHLGEIAVSQLLGL 246 (277)
T ss_dssp TTTTCEEECSBCCGGGGTS-SSCCBEEECCHHHHHHHHHHHHC--
T ss_pred CCCceEEEeeCCchHHhhC-CCCceEEeCCHHHHHHHHHHHHHHH
Confidence 48899999988854321 2211233344566777777777553
No 36
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=94.90 E-value=0.094 Score=48.69 Aligned_cols=107 Identities=8% Similarity=0.068 Sum_probs=64.2
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
+.++|||++ ...-....+|++..+... ...++-...|.+-+. ++.+ ..+. +...+.+.+.++
T Consensus 107 ~~~rigVla-T~~T~~~~~y~~~l~~~g-----~~~v~~~~~~~lv~~--------ie~g--~~~~--~~~~~~l~~~~~ 168 (255)
T 2jfz_A 107 KNAPILVLG-TKATIQSNAYDNALKQQG-----YLNISHLATSLFVPL--------IEES--ILEG--ELLETCMHYYFT 168 (255)
T ss_dssp TTSCEEEEE-CHHHHHHTHHHHHHHHTT-----CCCEEEEECTTHHHH--------HHTT--CCSS--HHHHHHHHHHHT
T ss_pred CCCEEEEEE-CHHHHhChHHHHHHHHcC-----CCEEEecChHHHHHH--------HHhc--ccCC--HHHHHHHHHHHh
Confidence 467999996 322223346776665432 123322333333221 1111 1222 334445555544
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccC--------CCCeeccHHHHHHHHHHh
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGC--------SIPFLHVGECVAKELKEA 206 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~--------~vPvl~Iveat~~~~~~~ 206 (376)
. .+.|+|.||+.|.-...+.+++++.+ ++|+|+-.+++++++.+.
T Consensus 169 ~-~~~~~d~iILGCTh~p~l~~~i~~~~~~~~~~~~~v~viDs~~~~a~~~~~~ 221 (255)
T 2jfz_A 169 P-LEILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQK 221 (255)
T ss_dssp T-CCSCCSEEEEESTTGGGGHHHHHHHHHHHSCCSSCCEEEEHHHHHHHHHHHH
T ss_pred h-hcCCCCEEEEcCcChHHHHHHHHHHhCccccCCCCCEEECcHHHHHHHHHHH
Confidence 4 45799999999987777788888755 499999999999888775
No 37
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=94.87 E-value=0.4 Score=42.97 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=84.1
Q ss_pred HHHHHHcCCcEEEEeCCC--chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCc
Q 017159 159 RAFLEQAGARCIVMPCHI--SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNT--AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~ 217 (376)
++.+.+.++|.|++.... ....++.+++. ++|++-+ ...+++++.+.|.+
T Consensus 51 ~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~-------- 121 (272)
T 3o74_A 51 QQLFRARRCDALFVASCLPPEDDSYRELQDK-GLPVIAIDRRLDPAHFCSVISDDRDASRQLAASLLSSAPR-------- 121 (272)
T ss_dssp HHHHHHTTCSEEEECCCCCSSCCHHHHHHHT-TCCEEEESSCCCTTTCEEEEECHHHHHHHHHHHHHTTCCS--------
T ss_pred HHHHHHcCCCEEEEecCccccHHHHHHHHHc-CCCEEEEccCCCccccCEEEEchHHHHHHHHHHHHHCCCc--------
Confidence 345677899998876543 23446666543 6666543 34456677776654
Q ss_pred eEEEeecchhh-----chHHHHHHHHhcCCceeecC--ccccccchHHHHHH-HhcC--ChHH----HHHHHHHHHHHHh
Q 017159 218 RIGVLATDATL-----SAGFYQEKLQNQGFEVVLPD--KATMEHVIIPTIEA-LNHR--DMEG----ARNLLRIGIQLLL 283 (376)
Q Consensus 218 rVGlLaT~~T~-----~s~~Y~~~L~~~G~evv~p~--~~~q~~~l~~~ie~-lk~G--~~~~----a~~~l~~~i~~L~ 283 (376)
||++++.+... +..-|.+.++++|+++.... ....+. ....++. +..+ +.+. .......+++.+.
T Consensus 122 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~ 200 (272)
T 3o74_A 122 SIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQGEAFSREC-GQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQ 200 (272)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEESSSSHHH-HHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHH
T ss_pred EEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeecCCCCHHH-HHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHH
Confidence 99999764321 22337788888887654321 111111 1111222 2221 1211 1223344556666
Q ss_pred hCC---CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 284 VRA---VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 284 ~~g---aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
+.| -|..|.|+...+..... .+..-.+-=+...+++.+++.+..
T Consensus 201 ~~g~vp~di~vvg~d~~~~~~~~-~p~lttv~~~~~~~g~~a~~~l~~ 247 (272)
T 3o74_A 201 ARPVDSRQLQLGTFGDNQLLDFL-PLPVNAMAQQHGQIAATALELALA 247 (272)
T ss_dssp TSCGGGCCCEEEEESCCGGGGTS-SSCEEEEECCHHHHHHHHHHHHHH
T ss_pred HcCCCccceEEEEeCChHHHHhc-CCCceEEEeCHHHHHHHHHHHHHH
Confidence 666 47889999888754221 221112223455666666666654
No 38
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=94.85 E-value=0.96 Score=41.25 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=82.1
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|.+ |
T Consensus 60 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 130 (290)
T 2rgy_A 60 VRFLIGRDCDGVVVISHDLHDEDLDELHR-MHPKMVFLNRAFDALPDASFCPDHRRGGELAAATLIEHGHR--------K 130 (290)
T ss_dssp HHHHHHTTCSEEEECCSSSCHHHHHHHHH-HCSSEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHhcCccEEEEecCCCCHHHHHHHhh-cCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCc--------e
Confidence 3456678999988865432 344566654 35666543 23456677776654 8
Q ss_pred EEEeecchh---h--chHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHHHh
Q 017159 219 IGVLATDAT---L--SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQLLL 283 (376)
Q Consensus 219 VGlLaT~~T---~--~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~L~ 283 (376)
||+++.+.. . +..-|.+.++++|+++. .......+. -...++. ++.+ ..+ ........+++.+.
T Consensus 131 I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 209 (290)
T 2rgy_A 131 LAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEG-GYAATCQLLESKAPFTGLFCANDTMAVSALARFQ 209 (290)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHH-HHHHHHHHHHHTCCCSEEEESSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhH-HHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHH
Confidence 999976532 1 22337888998887642 222111110 1111222 2222 111 11222334445555
Q ss_pred hCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 284 VRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 284 ~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
+.| -|.-|.|+...+.. ....+ .+..|+ +...+++.+++.+..
T Consensus 210 ~~G~~vP~di~vvg~D~~~~~-~~~~p-~lttv~~~~~~~g~~a~~~l~~ 257 (290)
T 2rgy_A 210 QLGISVPGDVSVIGYDDDYSA-AYAAP-ALTSVHIPTAELTQNAVRWLIN 257 (290)
T ss_dssp HTTCCTTTTCEEEEEECCTTS-TTSSS-CCEEEECCHHHHHHHHHHHHHH
T ss_pred HcCCCCCCceEEEEeCCchHh-cccCC-CceEEeCCHHHHHHHHHHHHHH
Confidence 555 37788888877753 22222 233443 455666666666554
No 39
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=94.63 E-value=2.5 Score=38.28 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=82.8
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+.+.++|.|++.... ....++.+.+ .++|++-+ ...+++++.+.|.+ +
T Consensus 57 ~~~l~~~~vdgiIi~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 127 (291)
T 3egc_A 57 VGQFFERRVDGLILAPSEGEHDYLRTELP-KTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIARGHT--------R 127 (291)
T ss_dssp HHHHHHTTCSEEEECCCSSCCHHHHHSSC-TTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHHCCCCEEEEeCCCCChHHHHHhhc-cCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCC--------E
Confidence 345677899998876654 3344555543 36776644 34567778777764 8
Q ss_pred EEEeecchh---h--chHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHh
Q 017159 219 IGVLATDAT---L--SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLLL 283 (376)
Q Consensus 219 VGlLaT~~T---~--~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L~ 283 (376)
|++++.... . +..-|.+.++++|+++. .......+. ....++. +..+ ..+. .......+++.+.
T Consensus 128 i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 206 (291)
T 3egc_A 128 IGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADN-GRDGAIKVLTGADRPTALLTSSHRITEGAMQALN 206 (291)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------C-CHHHHHHHHTC-CCCSEEEESSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhH-HHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHH
Confidence 999976542 1 22337888898887642 222111111 1122233 3222 1110 1122233444444
Q ss_pred hCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 284 VRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 284 ~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
+.| -|.-|+|+...+.... ..+..-.+-=+...+++.+++.+..
T Consensus 207 ~~g~~vP~di~vvg~d~~~~~~~-~~p~lttv~~~~~~~g~~av~~l~~ 254 (291)
T 3egc_A 207 VLGLRYGPDVEIVSFDNLPWMAF-LDPPLPVVEQPTRRIGQEAMRMLIH 254 (291)
T ss_dssp HHTCCBTTTBEEEEESCCGGGGG-SSSCCCEEECCHHHHHHHHHHHHHH
T ss_pred HcCCCCCCceEEEEecCchhHhh-cCCCceEEEECHHHHHHHHHHHHHH
Confidence 444 4788999988886321 1221123333455667777766654
No 40
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=94.51 E-value=0.55 Score=42.50 Aligned_cols=210 Identities=9% Similarity=0.032 Sum_probs=105.6
Q ss_pred ccCCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 80 NQANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 80 ~~~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
++.++||++=.- ..-.||..+.+... ...+....+++++.. .+. +.. .+.
T Consensus 5 ~~s~~Igvi~~~---~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--------------------~~~--~~~----~~~ 55 (276)
T 3jy6_A 5 QSSKLIAVIVAN---IDDYFSTELFKGISSILESRGYIGVLFDAN--------------------ADI--ERE----KTL 55 (276)
T ss_dssp CCCCEEEEEESC---TTSHHHHHHHHHHHHHHHTTTCEEEEEECT--------------------TCH--HHH----HHH
T ss_pred CCCcEEEEEeCC---CCchHHHHHHHHHHHHHHHCCCEEEEEeCC--------------------CCH--HHH----HHH
Confidence 356789998621 23456777776663 222223445443311 011 111 223
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
++.+.+.++|.|++........++.+++ .++|++-+ ...+++++.+.|.+ +|
T Consensus 56 ~~~l~~~~vdgiIi~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~I 126 (276)
T 3jy6_A 56 LRAIGSRGFDGLILQSFSNPQTVQEILH-QQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQGYQ--------HV 126 (276)
T ss_dssp HHHHHTTTCSEEEEESSCCHHHHHHHHT-TSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTTCC--------EE
T ss_pred HHHHHhCCCCEEEEecCCcHHHHHHHHH-CCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcCCC--------eE
Confidence 3556678999888776554445666654 36666543 33456667776654 99
Q ss_pred EEeecchh-hc-----hHHHHHHHHhcCCceeecCcc-ccccchHHHHHHHhcC-ChH----HHHHHHHHHHHHHhhCC-
Q 017159 220 GVLATDAT-LS-----AGFYQEKLQNQGFEVVLPDKA-TMEHVIIPTIEALNHR-DME----GARNLLRIGIQLLLVRA- 286 (376)
Q Consensus 220 GlLaT~~T-~~-----s~~Y~~~L~~~G~evv~p~~~-~q~~~l~~~ie~lk~G-~~~----~a~~~l~~~i~~L~~~g- 286 (376)
++++.+.. .. ..-|.+.+++++. +++.... ........+.+.+..+ ..+ ........+++.+.+.|
T Consensus 127 ~~i~~~~~~~~~~~~R~~gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 205 (276)
T 3jy6_A 127 VVLTSELELSRTRQERYRGILAAAQDVDV-LEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGL 205 (276)
T ss_dssp EEEEECSTTCHHHHHHHHHHHTTCSEEEE-EEECSSSCCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSSS
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHhCCc-EEEeccccCCcHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHcCC
Confidence 99987553 11 1225555555543 3333211 1111111122333332 111 11223334455565655
Q ss_pred ---CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 287 ---VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 287 ---aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
-|.-|+|+...+... ...+....+-=+...+++.+++.+...
T Consensus 206 ~vP~di~vig~d~~~~~~-~~~p~lttv~~~~~~~g~~av~~l~~~ 250 (276)
T 3jy6_A 206 IDNQTVTATGFADTDFIR-RMEPKLTLITQNPFLMGASSAEIMLRQ 250 (276)
T ss_dssp CCSSSEEEEEBCCCSTTT-CC--CCCEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECChHHhh-cCCCceEEEEeCHHHHHHHHHHHHHHH
Confidence 488899999887532 222221233334566777777776553
No 41
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=94.36 E-value=0.11 Score=48.87 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=65.1
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
+.++|||||--+.... .+|++..+.... .+.++....|.+-+. .+.+ ..+. ++..+.+.+.++
T Consensus 117 ~~~rIgVlaT~~T~~~-~~y~~~l~~~~~----g~~v~~~~~~~~v~~--------ie~g--~~~~--~~~~~~l~~~~~ 179 (273)
T 2oho_A 117 TKGQVGVIGTPMTVAS-DIYRKKIQLLAP----SIQVRSLACPKFVPI--------VESN--EMCS--SIAKKIVYDSLA 179 (273)
T ss_dssp SSSEEEEEECHHHHHH-THHHHHHHHHCT----TSEEEEEECTTHHHH--------HCC---------HHHHHHHHHHHT
T ss_pred CCCeEEEEECchhhcc-hHHHHHHHHhCC----CCEEEecCCHHHHHH--------HHCC--CCCC--HHHHHHHHHHHH
Confidence 4679999984443433 456666554321 233433333432111 1111 1221 445566666677
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccC--CCCeeccHHHHHHHHHH
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGC--SIPFLHVGECVAKELKE 205 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~--~vPvl~Iveat~~~~~~ 205 (376)
.|.+. +|.||+.|.-...+.+++++.+ ++|+++-.+++++++.+
T Consensus 180 ~l~~~-~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~~a~~~~~ 225 (273)
T 2oho_A 180 PLVGK-IDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISV 225 (273)
T ss_dssp TTTTS-CSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHHHH
T ss_pred HHHhc-CCEEEEcCCCHHHHHHHHHHHhCCCCEEECcHHHHHHHHHH
Confidence 77666 9999999977666688888766 79999999999877665
No 42
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=94.12 E-value=0.036 Score=51.45 Aligned_cols=106 Identities=9% Similarity=0.113 Sum_probs=65.7
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
+.++|||+|--+.... .+|++..+. . ...++....|.+-+ ..+.+ ..+. ++..+.+.+.++
T Consensus 105 ~~~rigVlaT~~T~~~-~~y~~~l~~---~---g~~v~~~~~~~~v~--------~ie~g--~~~~--~~~~~~l~~~~~ 165 (254)
T 1b73_A 105 RNKKIGVIGTPATVKS-GAYQRKLEE---G---GADVFAKACPLFAP--------LAEEG--LLEG--EITRKVVEHYLK 165 (254)
T ss_dssp SSCEEEEEECHHHHHH-CHHHHHHHT---T---SCEEEEEECCCCTT--------TSCGG--GGSG--GGHHHHHHHHST
T ss_pred CCCEEEEEEChHHhhh-HHHHHHHHc---C---CCEEEecCCHHHHH--------HHHCC--CCCC--HHHHHHHHHHHH
Confidence 4679999984444443 467777661 1 12333233333211 11111 1111 234445666666
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccC-CCCeeccHHHHHHHHHHh
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGC-SIPFLHVGECVAKELKEA 206 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~-~vPvl~Iveat~~~~~~~ 206 (376)
.|.+. +|.|++.|.-...+.+++++.+ ++|+++-.+++++.+.+.
T Consensus 166 ~l~~~-~d~IILGCT~~p~l~~~i~~~~~~vpviDs~~~~a~~~~~~ 211 (254)
T 1b73_A 166 EFKGK-IDTLILGCTHYPLLKKEIKKFLGDAEVVDSSEALSLSLHNF 211 (254)
T ss_dssp TTTTT-CSEEEECCCCTTCCHHHHHHHSCSCEEECHHHHHHHTTTTT
T ss_pred HHHhc-CCEEEECccChHHHHHHHHHHcCCCeEECCHHHHHHHHHHH
Confidence 66656 9999999987766788998877 899999999988877653
No 43
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=94.03 E-value=0.12 Score=46.69 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHHHHHc--CCcEEEEeCCCchhh--HHHHhccCCCCeeccHHHHHHHHHHh
Q 017159 155 LRHKRAFLEQA--GARCIVMPCHISHAW--HGDVSEGCSIPFLHVGECVAKELKEA 206 (376)
Q Consensus 155 l~~~~~~L~~~--Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~Iveat~~~~~~~ 206 (376)
+.+.++.+.+. |+|+|++.|.-.+.+ .+++++.+++||++...+++.++.+.
T Consensus 158 ~~~~~~~l~~~~~gadaIvLgCT~l~~~~~~~~l~~~~g~PVids~~~~a~~~l~~ 213 (223)
T 2dgd_A 158 IYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVVSENAAAMWEALNK 213 (223)
T ss_dssp HHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCEEEEeCCcccHHHHHHHHHHHhCCCEEEhHHHHHHHHHHH
Confidence 44445556667 999999999988874 78888888999999999988776653
No 44
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=93.93 E-value=0.14 Score=48.37 Aligned_cols=106 Identities=9% Similarity=0.089 Sum_probs=62.7
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRA 160 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~ 160 (376)
+.++|||||=-|...+- +|++..+.. + ...++-...|.+-..+ +.+ ..+. +...+.+.+.++
T Consensus 131 ~~~~IGVLaT~~Ti~s~-~Y~~~l~~~--~---~~~V~~~~~~~lV~~I--------E~g--~~~~--~~~~~~~~~~l~ 192 (274)
T 3uhf_A 131 KNKEILVIATKATIKSE-EYQKRLLSQ--G---YTNINALATGLFVPMV--------EEG--IFEG--DFLQSAMEYYFK 192 (274)
T ss_dssp TTSCEEEEECHHHHHHT-HHHHHHHTT--T---CCCEEEEECTTHHHHH--------HTT--CCSS--HHHHHHHHHHHT
T ss_pred CCCeEEEEeccccccHH-HHHHHHHHc--C---CceEEecCCHHHHHHH--------HcC--CCCC--HHHHHHHHHHHH
Confidence 46799999844444332 555554432 1 2233333333322211 111 1222 344445555555
Q ss_pred HHHHcCCcEEEEeCCCchhhHHHHhccC--CCCeeccHHHHHHHHHHh
Q 017159 161 FLEQAGARCIVMPCHISHAWHGDVSEGC--SIPFLHVGECVAKELKEA 206 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~~d~L~~~~--~vPvl~Iveat~~~~~~~ 206 (376)
.|. |+|.||+.|.-.-...+++++.+ ++|+++-.+++++.+.+.
T Consensus 193 ~l~--g~D~iILGCTh~PlL~~~i~~~~~~~v~lIDs~~~~A~~~~~~ 238 (274)
T 3uhf_A 193 NIT--TPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKER 238 (274)
T ss_dssp TCC--CCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHHHHHHHHHH
T ss_pred Hhc--CCCEEEECCCChHHHHHHHHHHcCCCCEEEcCHHHHHHHHHHH
Confidence 554 99999999975555578888765 799999999999998875
No 45
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=93.89 E-value=0.078 Score=47.92 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCch--hhHHHHhccCCCCeeccHHHHHHHHHHh
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHISH--AWHGDVSEGCSIPFLHVGECVAKELKEA 206 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTAH--~~~d~L~~~~~vPvl~Iveat~~~~~~~ 206 (376)
..+.+.+.++.+.+.|+|+|++.|.-.. .+.+++++.+++||++..+++++.+.+.
T Consensus 159 ~~~~l~~~~~~l~~~~~d~IvLgCT~~~t~~~~~~i~~~~~vpvids~~~~a~~~~~~ 216 (228)
T 2eq5_A 159 GRREVINAAKRLKEKGVEVIALGCTGMSTIGIAPVLEEEVGIPVIDPVIASGAVALHA 216 (228)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCTHHHHHTCHHHHHHHHSSCEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHcCCCEEchHHHHHHHHHHH
Confidence 3445666667777779999999998777 6688898888999999999988877653
No 46
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=93.77 E-value=2.9 Score=37.99 Aligned_cols=158 Identities=12% Similarity=0.066 Sum_probs=83.8
Q ss_pred HHHHHHcCCcEEEEeCC-CchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCH-ISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCN-TAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|.+.++|.|++... .....++.+++ .++|++-+ ...+++++.+.|.+ |
T Consensus 65 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 135 (289)
T 2fep_A 65 LNTMLGKQVDGIVFMGGNITDEHVAEFKR-SPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHT--------D 135 (289)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHH-SSSCEEEESCCCTTCCSCEEECCHHHHHHHHHHHHHHTTCS--------S
T ss_pred HHHHHhCCCCEEEEecCCCCHHHHHHHHh-cCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------e
Confidence 34566789998887653 22344666643 35665432 33456777777654 8
Q ss_pred EEEeecch-h---h--chHHHHHHHHhcCCcee----ecCccccccchHHHHHHH-hcC-ChHH----HHHHHHHHHHHH
Q 017159 219 IGVLATDA-T---L--SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEAL-NHR-DMEG----ARNLLRIGIQLL 282 (376)
Q Consensus 219 VGlLaT~~-T---~--~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~l-k~G-~~~~----a~~~l~~~i~~L 282 (376)
|++++.+. . . +..-|.+.++++|+++. .......+. -...++.+ ..+ ..+. .......+++.+
T Consensus 136 I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al 214 (289)
T 2fep_A 136 IAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDS-GLEALQHLMSLDKKPTAILSATDEMALGIIHAA 214 (289)
T ss_dssp EEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHH-HHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHH
T ss_pred EEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHH-HHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHH
Confidence 99998653 1 1 22338888999987642 222111111 11223333 222 2111 122233445556
Q ss_pred hhCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 283 LVRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 283 ~~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.+.| -|.-|+|+...+... ...+ .+..|+ +...+++.+++.+..
T Consensus 215 ~~~G~~vP~di~vvg~D~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~ 263 (289)
T 2fep_A 215 QDQGLSIPEDLDIIGFDNTRLSL-MVRP-QLSTVVQPTYDIGAVAMRLLTK 263 (289)
T ss_dssp HHTTCCTTTTCEEEEEECCGGGT-SSSS-CCEEEECCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCeEEEEECChHHHh-hcCC-ceeEEeCCHHHHHHHHHHHHHH
Confidence 5555 378888988877542 2222 233343 456677777766654
No 47
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=93.59 E-value=2.4 Score=39.60 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=83.0
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCCc
Q 017159 159 RAFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~~ 217 (376)
++.|.+.++|.|++..... ....+.+++..++|++-+ ...+++++.+.|++
T Consensus 107 ~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------- 178 (340)
T 1qpz_A 107 LSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHR-------- 178 (340)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEEEESSCCCSSSEEEECCHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHHHcCCCCEEEEeCCCCChHHHHHHHhhCCCCEEEEecccCCCCCCCEEEECHHHHHHHHHHHHHHCCCC--------
Confidence 3456678999998865432 334566654345665422 24456777777765
Q ss_pred eEEEeecchh---h--chHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHHHH
Q 017159 218 RIGVLATDAT---L--SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLL 282 (376)
Q Consensus 218 rVGlLaT~~T---~--~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L 282 (376)
|||+++.+.. . +..-|.+.++++|+++. .......+. -...++. +..+ ..+. .......+++.+
T Consensus 179 ~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al 257 (340)
T 1qpz_A 179 EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPES-GYRAMQQILSQPHRPTAVFCGGDIMAMGALCAA 257 (340)
T ss_dssp CEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHH-HHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHH
T ss_pred EEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHH-HHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHH
Confidence 8999975421 1 22338888999987642 111111111 1112233 2222 1111 122233445556
Q ss_pred hhCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 283 LVRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 283 ~~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.+.| -|.-|+|+...+.. ....+ .+..|+ +...+++.+++.+..
T Consensus 258 ~~~G~~vP~disvig~D~~~~~-~~~~p-~lttv~~~~~~~g~~a~~~l~~ 306 (340)
T 1qpz_A 258 DEMGLRVPQDVSLIGYDNVRNA-RYFTP-ALTTIHQPKDSLGETAFNMLLD 306 (340)
T ss_dssp HHTTCCTTTTCEEEEEECCTTG-GGSSS-CCEEEECCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCeEEEeECCchHh-hccCC-ceeEEecCHHHHHHHHHHHHHH
Confidence 5555 37788898888763 22222 233443 455666666665543
No 48
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=93.58 E-value=0.1 Score=47.42 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCC-CCCCCeeeehHHHHHHHHHH
Q 017159 268 MEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKD-DPLLKKCIDPMDALARSTVT 324 (376)
Q Consensus 268 ~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~-~~~~vpvIDp~~~lA~a~v~ 324 (376)
.++....+.+.++.|.+.|+|+|+++|.=.+..++.. ...++|++...+..++++..
T Consensus 55 ~~~~~~~l~~~~~~L~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~a~~~~~~~ 112 (226)
T 2zsk_A 55 WEGRKKILINAAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILK 112 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEESSSGGGGGHHHHHHHCSSCBCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCcHHHHHHHHHHhCCCCEeccHHHHHHHHHH
Confidence 4556778888888898889999999999887654432 22368999999888887754
No 49
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=93.58 E-value=0.34 Score=44.66 Aligned_cols=52 Identities=8% Similarity=-0.013 Sum_probs=41.6
Q ss_pred HHHHHHH-H-HHcCCcEEEEeCCCchhh--HHHHhccCCCCeeccHHHHHHHHHHh
Q 017159 155 LRHKRAF-L-EQAGARCIVMPCHISHAW--HGDVSEGCSIPFLHVGECVAKELKEA 206 (376)
Q Consensus 155 l~~~~~~-L-~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~Iveat~~~~~~~ 206 (376)
+.+.++. + ...|+|+|++.|.-.+.+ .+++++.+++||++...+++.++.+.
T Consensus 167 ~~~~~~~~l~~~~~adaivL~CT~l~~l~~i~~le~~lg~PVids~~a~~w~~lr~ 222 (240)
T 3ixl_A 167 LVDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVRL 222 (240)
T ss_dssp HHHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSSCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCEEEEeCCCCchhhhHHHHHHHhCCCEEeHHHHHHHHHHHH
Confidence 4444555 6 678999999999877765 58999999999999999988776664
No 50
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=93.44 E-value=2.9 Score=38.94 Aligned_cols=160 Identities=16% Similarity=0.145 Sum_probs=84.4
Q ss_pred HHHHHHcCCcEEEEeCCCch-hhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHISH-AWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH-~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|.+.++|.|++...... ..+.++.+..++|++-+ ...+++++.+.|++ +
T Consensus 112 ~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~ 183 (338)
T 3dbi_A 112 IQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQ--------E 183 (338)
T ss_dssp HHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHHHHHHHHHCCCC--------E
Confidence 35567789999988664322 22333334446665533 33467778777765 8
Q ss_pred EEEeecchh-----hchHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHHHh
Q 017159 219 IGVLATDAT-----LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQLLL 283 (376)
Q Consensus 219 VGlLaT~~T-----~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~L~ 283 (376)
||+++.+.. .+..-|.+.++++|+++. .......+. -...++. +..+ .++ ........+++.+.
T Consensus 184 I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~ 262 (338)
T 3dbi_A 184 IAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPAS-GAEGVEMLLERGAKFSALVASNDDMAIGAMKALH 262 (338)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHH-HHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHH-HHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHH
Confidence 999975422 122338888999987652 222211111 1112222 2222 111 01222334455566
Q ss_pred hCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 284 VRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 284 ~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
+.| -|.-|.|+.+.++..-. .+..-.+-=+...+++.+++.+..
T Consensus 263 ~~G~~vP~di~vvg~D~~~~~~~~-~p~lttv~~~~~~~g~~a~~~l~~ 310 (338)
T 3dbi_A 263 ERGVAVPEQVSVIGFDDIAIAPYT-VPALSSVKIPVTEMIQEIIGRLIF 310 (338)
T ss_dssp HTTCCTTTTCEEEEESCCTTGGGS-SSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCeEEEEECChHHHhhc-CCcceEEecCHHHHHHHHHHHHHH
Confidence 655 37889999888754321 121112333556677777776655
No 51
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=93.43 E-value=1.6 Score=40.13 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=86.3
Q ss_pred HHHHHHcCCcEEEEeCC-Cchh-hHHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCH-ISHA-WHGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCN-TAH~-~~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|.+.++|.|++... .... .++.+.+ ++|++-+ ...+++++.+.|.+ |
T Consensus 64 ~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~--~iPvV~i~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 133 (303)
T 3kke_A 64 SRLVSEGRVDGVLLQRREDFDDDMLAAVLE--GVPAVTINSRVPGRVGSVILDDQKGGGIATEHLITLGHS--------R 133 (303)
T ss_dssp HHHHHSCSSSEEEECCCTTCCHHHHHHHHT--TSCEEEESCCCTTCCCEEEECHHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHhCCCcEEEEecCCCCcHHHHHHHhC--CCCEEEECCcCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------e
Confidence 35577789998877654 3334 6777776 7887643 33567778877765 8
Q ss_pred EEEeecchh-----hchHHHHHHHHhcCCcee----ecCccccccchHHHHHHH------hcC-ChH----HHHHHHHHH
Q 017159 219 IGVLATDAT-----LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEAL------NHR-DME----GARNLLRIG 278 (376)
Q Consensus 219 VGlLaT~~T-----~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~l------k~G-~~~----~a~~~l~~~ 278 (376)
||+++.+.. .+..-|.+.++++|+++. .......+. -...++.+ ..+ ..+ ........+
T Consensus 134 I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~ 212 (303)
T 3kke_A 134 IAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADA-GSAALNTLYRGANLGKPDGPTAVVVASVNAAVGA 212 (303)
T ss_dssp EEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHH-HHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHH
T ss_pred EEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHH-HHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHH
Confidence 999976432 122338888999987642 222211111 11223333 222 111 012223344
Q ss_pred HHHHhhCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 279 IQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 279 i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
++.+.+.| -|.-|+|+...+..... .+..-.+-=+...+++.+++.+..
T Consensus 213 ~~al~~~G~~vP~di~vig~D~~~~~~~~-~p~lttv~~~~~~~g~~av~~L~~ 265 (303)
T 3kke_A 213 LSTALRLGLRVPEDLSIVGINTTWVSDTV-YPALTTVRLPLQRLGEVAADVLME 265 (303)
T ss_dssp HHHHHHTTCCTTTTCEEEEESCCHHHHHS-SSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCceEEEEEcChhHhhcC-CCCeeEEecCHHHHHHHHHHHHHH
Confidence 45555555 37889999887753211 111112333456666777766654
No 52
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=93.35 E-value=4.1 Score=38.01 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=85.9
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 159 RAFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
++.|.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|++ ||
T Consensus 111 ~~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I 181 (339)
T 3h5o_A 111 LRAYLQHRPDGVLITGLSHAEPFERILSQ-HALPVVYMMDLADDGRCCVGFSQEDAGAAITRHLLSRGKR--------RI 181 (339)
T ss_dssp HHHHHTTCCSEEEEECSCCCTTHHHHHHH-TTCCEEEEESCCSSSCCEEECCHHHHHHHHHHHHHHTTCC--------SE
T ss_pred HHHHHcCCCCEEEEeCCCCCHHHHHHHhc-CCCCEEEEeecCCCCCeEEEECHHHHHHHHHHHHHHCCCC--------eE
Confidence 3556778999988765432 233555543 46777644 34567778887765 89
Q ss_pred EEeecchh--h--chHHHHHHHHhcCCc-----eeecCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHHHhh
Q 017159 220 GVLATDAT--L--SAGFYQEKLQNQGFE-----VVLPDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQLLLV 284 (376)
Q Consensus 220 GlLaT~~T--~--~s~~Y~~~L~~~G~e-----vv~p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~L~~ 284 (376)
|+++.+.. . +..-|.+.++++|+. ++.+.....+. -...++. ++.+ .++ ........+++.+.+
T Consensus 182 ~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~ 260 (339)
T 3h5o_A 182 GFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQM-GADMLDRALAERPDCDALFCCNDDLAIGALARSQQ 260 (339)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHH-HHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHH
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHH-HHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHH
Confidence 99986531 1 122378888988872 22222211111 1111222 2222 111 112233344555655
Q ss_pred CC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 285 RA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 285 ~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
.| -|.-|+|+...+..... .+..-.+-=+...+++.+++.+...
T Consensus 261 ~G~~vP~disvvgfD~~~~~~~~-~p~lttv~~~~~~~g~~Av~~L~~~ 308 (339)
T 3h5o_A 261 LGIAVPERLAIAGFNDLQPAAWC-TPPLTTVATPRRDIGVHAAKALLQL 308 (339)
T ss_dssp TTCCTTTTCEEECSBCCGGGTTS-SSCCBEEECCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEEECCHHHHhcc-CCCceEEEeCHHHHHHHHHHHHHHH
Confidence 55 47889999988854322 2221233345666777777776553
No 53
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=93.31 E-value=0.11 Score=47.07 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCC-CCCCCeeeehHHHHHHHHHHH
Q 017159 268 MEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKD-DPLLKKCIDPMDALARSTVTW 325 (376)
Q Consensus 268 ~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~-~~~~vpvIDp~~~lA~a~v~~ 325 (376)
.+.....+.+.++.|.+.|+|+||++|.=.+..++.. ...++|++...+..++++.+.
T Consensus 56 ~~~~~~~l~~~~~~l~~~g~d~iviaCnTa~~~~~~l~~~~~iPvi~i~~~~~~~a~~~ 114 (228)
T 1jfl_A 56 GEDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKEL 114 (228)
T ss_dssp SCCCHHHHHHHHHHHHHHTCSEEECSCTGGGGGHHHHHHHCSSCBCCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHhCCCCEechHHHHHHHHHHc
Confidence 3445667778888888889999999998775444432 223579999888877777543
No 54
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=93.30 E-value=2.2 Score=38.82 Aligned_cols=157 Identities=12% Similarity=0.116 Sum_probs=84.7
Q ss_pred HHHHHcCCcEEEEeCC-CchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPCH-ISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCN-TAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.|++... .....++.+.+ ++|++-+ ...+++++.+.|.+ ||
T Consensus 60 ~~l~~~~vdgiIi~~~~~~~~~~~~~~~--~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I 129 (289)
T 3k9c_A 60 QALMRERCEAAILLGTRFDTDELGALAD--RVPALVVARASGLPGVGAVRGDDVAGITLAVDHLTELGHR--------NI 129 (289)
T ss_dssp HHHTTTTEEEEEEETCCCCHHHHHHHHT--TSCEEEESSCCSSTTSEEEEECHHHHHHHHHHHHHHTTCC--------SE
T ss_pred HHHHhCCCCEEEEECCCCCHHHHHHHHc--CCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------cE
Confidence 4456689998877654 33445666655 6776654 33467778877765 89
Q ss_pred EEeecchhh----chHHHHHHHHhcCCce---eecCccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHhhCC
Q 017159 220 GVLATDATL----SAGFYQEKLQNQGFEV---VLPDKATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLLLVRA 286 (376)
Q Consensus 220 GlLaT~~T~----~s~~Y~~~L~~~G~ev---v~p~~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L~~~g 286 (376)
|+++.+... +..-|.+.++++|+++ ++......+. -...++. +..+ ..+. .......+++.+.+.|
T Consensus 130 ~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g 208 (289)
T 3k9c_A 130 AHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETE-GAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSG 208 (289)
T ss_dssp EEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHH-HHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEECCCCHHH-HHHHHHHHHcCCCCCCEEEECChHHHHHHHHHHHHcC
Confidence 999875422 2233888899999873 2222221111 1122223 2222 1111 1222334455565555
Q ss_pred ----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 287 ----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 287 ----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
-|.-|+|+...+... ...+..-.+-=+...+++.+++.+..
T Consensus 209 ~~vP~di~vig~D~~~~~~-~~~p~lttv~~~~~~~g~~a~~~l~~ 253 (289)
T 3k9c_A 209 RDVPADISVVGYDDSRLAR-IPHVQMTTISQDATHMAEAAVDGALA 253 (289)
T ss_dssp CCTTTTCEEEEEECCTTTT-CTTTCCEEEECCHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCHHHHh-cCCCCcceEecCHHHHHHHHHHHHHH
Confidence 378899998887532 22221112333455566666666554
No 55
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=93.24 E-value=4.5 Score=36.70 Aligned_cols=161 Identities=12% Similarity=0.021 Sum_probs=82.1
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc--------------------HHHHHHHHHHh--cCCCCcC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV--------------------GECVAKELKEA--KLKPLEA 213 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~--g~k~~~~ 213 (376)
++.+.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+. |.
T Consensus 54 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~----- 127 (305)
T 3g1w_A 54 LEQAIAKNPAGIAISAIDPVELTDTINKAVD-AGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGE----- 127 (305)
T ss_dssp HHHHHHHCCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHhCCCEEEEcCCCHHHHHHHHHHHHH-CCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHhCCC-----
Confidence 34566779998887654433 23444443 35665532 33456777776 65
Q ss_pred CCCceEEEeecchhh----chHHHHHHHHhcCCceeec----CccccccchHHHHHH-HhcC-ChH----HHHHHHHHHH
Q 017159 214 GSGVRIGVLATDATL----SAGFYQEKLQNQGFEVVLP----DKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGI 279 (376)
Q Consensus 214 ~~~~rVGlLaT~~T~----~s~~Y~~~L~~~G~evv~p----~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i 279 (376)
+||++++.+... +..-|.+.++++|.++... .....+. ....+.. +..+ ..+ ........++
T Consensus 128 ---~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~ 203 (305)
T 3g1w_A 128 ---GEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLH-SRRVAHQLLEDYPNLAGIFATEANGGVGVG 203 (305)
T ss_dssp ---EEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHH-HHHHHHHHHHHCTTEEEEEESSHHHHHHHH
T ss_pred ---cEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHH-HHHHHHHHHHhCCCceEEEECCCcchhhHH
Confidence 499999865421 2223778888887655322 1111111 1111222 2222 111 1122334455
Q ss_pred HHHhhCCC--CEEEECCCccccccCCC-CCC-CCeeeehHHHHHHHHHHHHHhc
Q 017159 280 QLLLVRAV--NAVIIGSDEMQGVLPKD-DPL-LKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 280 ~~L~~~ga--DaVILGCTElpll~~~~-~~~-~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
+.+.+.|. |.-|.|+...+...... .+. ...+--+...+++.+++.+...
T Consensus 204 ~al~~~g~~~di~vig~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~av~~l~~~ 257 (305)
T 3g1w_A 204 DAVRLESRAGEIQIISFDTDKGTLDLVDEGIISATLAQGTWNMGYWSLTYLFHL 257 (305)
T ss_dssp HHHHHTTCTTTSEEEEESCCHHHHHHHHTTSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEeCCCHHHHHHHHcCceEEEEecChHHHHHHHHHHHHHH
Confidence 55666665 78899998877221111 111 1133344566666666666543
No 56
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=93.21 E-value=0.18 Score=47.37 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCcEEEEe-CCCchhh--HHHHhccCCCCeeccHHHHHHHHHHh
Q 017159 155 LRHKRAFLEQAGARCIVMP-CHISHAW--HGDVSEGCSIPFLHVGECVAKELKEA 206 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIa-CNTAH~~--~d~L~~~~~vPvl~Iveat~~~~~~~ 206 (376)
+.+.++.+...|||+|++. |.-...+ .+++++.+++||++...+++.++.+.
T Consensus 196 l~~~~~~l~~~gadaIvLg~CT~l~~~~~~~~le~~lg~PVids~~a~a~~~l~~ 250 (273)
T 2xed_A 196 VMAAARSLDLSEVDALVISCAVQMPSLPLVETAEREFGIPVLSAATAGAYSILRS 250 (273)
T ss_dssp HHHHHHHSCCTTCSEEEEESSSSSCCTTHHHHHHHHHSSCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEcCCCCcchHHhHHHHHHHhCCCEEcHHHHHHHHHHHH
Confidence 4455566777899999999 9988874 78899889999999999988766553
No 57
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=93.15 E-value=0.23 Score=46.91 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=40.9
Q ss_pred HHHHHHHHHHH--cCCcEEEEeCCCchhhHHHHhccC--CCCeeccHHHHHHHHHHh
Q 017159 154 NLRHKRAFLEQ--AGARCIVMPCHISHAWHGDVSEGC--SIPFLHVGECVAKELKEA 206 (376)
Q Consensus 154 ~l~~~~~~L~~--~Gad~IVIaCNTAH~~~d~L~~~~--~vPvl~Iveat~~~~~~~ 206 (376)
.+.+.++.|.+ .|+|.||+.|.-...+.+++++.+ ++|+++-.+++++++.+.
T Consensus 182 ~l~~~l~~l~~~~~~~D~IVLGCTh~p~l~~~i~~~lg~~vpviDs~~a~a~~~~~~ 238 (285)
T 2jfn_A 182 ALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWL 238 (285)
T ss_dssp HHHHHTHHHHTCSSCCSEEEECSTTGGGGHHHHHHHSCTTCEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCcHHHHHHHHHhcCCCCEEECcHHHHHHHHHHH
Confidence 34555555654 589999999987766788998877 499999999988877653
No 58
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=93.07 E-value=2.4 Score=38.71 Aligned_cols=157 Identities=14% Similarity=0.070 Sum_probs=82.9
Q ss_pred HHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.+.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|.+ ||
T Consensus 59 ~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I 129 (294)
T 3qk7_A 59 HLVETRRVDALIVAHTQPEDFRLQYLQK-QNFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQ--------RI 129 (294)
T ss_dssp HHHHHTCCSEEEECSCCSSCHHHHHHHH-TTCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTTCC--------CE
T ss_pred HHHHcCCCCEEEEeCCCCChHHHHHHHh-CCCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCCCc--------eE
Confidence 44667899988876543 2344555554 35665543 33467778877765 89
Q ss_pred EEeecchh-----hchHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHhh
Q 017159 220 GVLATDAT-----LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLLLV 284 (376)
Q Consensus 220 GlLaT~~T-----~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L~~ 284 (376)
++++.+.. .+..-|.+.++++|+++. .......+. -...++. +..+ ..+. .......+++.+.+
T Consensus 130 ~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~ 208 (294)
T 3qk7_A 130 AFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPG-GYLAASRLLALEVPPTAIITDCNMLGDGVASALDK 208 (294)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHH-HHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHH
T ss_pred EEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHH-HHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHH
Confidence 99976532 123338888999987642 221111111 1112222 2222 1111 12233344555656
Q ss_pred CC----CCEEEECCCccccccCCCCCCCCeeee-hH-HHHHHHHHHHHHh
Q 017159 285 RA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PM-DALARSTVTWARS 328 (376)
Q Consensus 285 ~g----aDaVILGCTElpll~~~~~~~~vpvID-p~-~~lA~a~v~~a~~ 328 (376)
.| -|.-|+|+...+... ...+ .+..|+ +. ..+++.+++.+..
T Consensus 209 ~G~~vP~di~vig~D~~~~~~-~~~p-~lttv~~~~~~~~g~~av~~L~~ 256 (294)
T 3qk7_A 209 AGLLGGEGISLIAYDGLPDDS-LLDI-AVTPIVQNTRTSVGKQIASMICD 256 (294)
T ss_dssp TTCSSTTSCEEEEETCSCTTC-SCCS-CCEEEECCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCceEEEeecCccHHh-hcCC-CceeEecCcHHHHHHHHHHHHHH
Confidence 55 378899998888632 1222 223332 33 4666666666554
No 59
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=93.06 E-value=4.8 Score=36.18 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=82.0
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc------------------HHHHHHHHHH--hcCCCCcCCC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV------------------GECVAKELKE--AKLKPLEAGS 215 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I------------------veat~~~~~~--~g~k~~~~~~ 215 (376)
++.+.+.++|.|++...... ..++.+++ .++|++.+ ...+++++.+ .|.
T Consensus 54 ~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~------- 125 (291)
T 3l49_A 54 IQTLIAQKPDAIIEQLGNLDVLNPWLQKIND-AGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGK------- 125 (291)
T ss_dssp HHHHHHHCCSEEEEESSCHHHHHHHHHHHHH-TTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCC-------
Confidence 34566789999887655422 23444443 36676543 3456677777 554
Q ss_pred CceEEEeecchh-----hchHHHHHHHHhc-CCceeecCcc-----ccccchHHHHHH-HhcC----ChHH----HHHHH
Q 017159 216 GVRIGVLATDAT-----LSAGFYQEKLQNQ-GFEVVLPDKA-----TMEHVIIPTIEA-LNHR----DMEG----ARNLL 275 (376)
Q Consensus 216 ~~rVGlLaT~~T-----~~s~~Y~~~L~~~-G~evv~p~~~-----~q~~~l~~~ie~-lk~G----~~~~----a~~~l 275 (376)
+||++++.... .+..-|.+.++++ |++++.+... ..+. ....++. +... +.+. .....
T Consensus 126 -~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ai~~~~d~~a 203 (291)
T 3l49_A 126 -GNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQS-AYSNVTDMLTKYPNEGDVGAIWACWDVPM 203 (291)
T ss_dssp -EEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHH-HHHHHHHHHHHCCSTTSCCEEEESSHHHH
T ss_pred -ceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHH-HHHHHHHHHHhCCCcCCcCEEEECCCchH
Confidence 49999974321 1223378888888 5664432210 1111 1111222 2221 2211 12333
Q ss_pred HHHHHHHhhCCC-CEEEECCCccccccC----CCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 276 RIGIQLLLVRAV-NAVIIGSDEMQGVLP----KDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 276 ~~~i~~L~~~ga-DaVILGCTElpll~~----~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
..+++.+.+.|. |.-|+|+-..+.... ...+....+-=+...+++.+++.+..
T Consensus 204 ~g~~~al~~~g~~di~vvg~d~~~~~~~~i~~~~~p~lttv~~~~~~~g~~av~~l~~ 261 (291)
T 3l49_A 204 IGATQALQAAGRTDIRTYGVDGSPEFVEMVADPESPAGAVAAQQPSEIGKLAVQNVAR 261 (291)
T ss_dssp HHHHHHHHHTTCCSCEEEEEECCHHHHHHHHCTTSCEEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEecCCHHHHHHHHCCCCCeEEEEecCHHHHHHHHHHHHHH
Confidence 445556666665 888999888876422 11121112223445566666666554
No 60
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=92.90 E-value=3.2 Score=37.34 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=79.9
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCCc
Q 017159 159 RAFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~~ 217 (376)
++.|.+.++|.|++..... ....+.+++..++|++.+ ...+++++.+.|.+
T Consensus 56 ~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~~~~~~~~L~~~G~~-------- 127 (289)
T 1dbq_A 56 LSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHR-------- 127 (289)
T ss_dssp HHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCCSSSCEEEEECHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHhCCCCEEEEEeccCCHHHHHHHHhccCCCEEEEccCCCccCcCCEEEeCcHHHHHHHHHHHHHCCCC--------
Confidence 3456678999988765443 344566654346665432 23456667776654
Q ss_pred eEEEeecchh---h--chHHHHHHHHhcCCcee----ecCccccccchHHHHHHH-hcC-ChHH----HHHHHHHHHHHH
Q 017159 218 RIGVLATDAT---L--SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEAL-NHR-DMEG----ARNLLRIGIQLL 282 (376)
Q Consensus 218 rVGlLaT~~T---~--~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~l-k~G-~~~~----a~~~l~~~i~~L 282 (376)
||++++.+.. . +..-|.+.++++|+++. .......+. ....++.+ ..+ +.+. .......+++.+
T Consensus 128 ~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al 206 (289)
T 1dbq_A 128 EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPES-GYRAMQQILSQPHRPTAVFCGGDIMAMGALCAA 206 (289)
T ss_dssp SEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHH-HHHHHHHHHTSSSCCSEEEESCHHHHHHHHHHH
T ss_pred eEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHH-HHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHH
Confidence 8999975421 1 22337888999887643 111111111 11223332 221 2211 122233444555
Q ss_pred hhCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 283 LVRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 283 ~~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.+.| -|.-|.|+...+.. ....+ .+..|+ +...+++.+++.+..
T Consensus 207 ~~~G~~vP~di~vvg~d~~~~~-~~~~p-~lttv~~~~~~~g~~a~~~l~~ 255 (289)
T 1dbq_A 207 DEMGLRVPQDVSLIGYDNVRNA-RYFTP-ALTTIHQPKDSLGETAFNMLLD 255 (289)
T ss_dssp HHTTCCTTTTCEEEEEECCTTG-GGSSS-CCEEEECCSHHHHHHHHHHHHH
T ss_pred HHcCCCCCCceEEEeeCCchHh-ccCCC-ccccccCCHHHHHHHHHHHHHH
Confidence 5555 36788888877753 22222 233343 344555555555443
No 61
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=92.89 E-value=0.93 Score=41.14 Aligned_cols=155 Identities=13% Similarity=0.148 Sum_probs=77.5
Q ss_pred HHHHHHcCCcEEEEeCCCch-hhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHISH-AWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH-~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|.+.++|.|++...... ..++.+ .++|++-+ ...+++++.+.|. +|
T Consensus 56 ~~~l~~~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~G~--------~~ 124 (288)
T 2qu7_A 56 IETFVSQNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELESTSLPSITVDNEEAAYIATKRVLESTC--------KE 124 (288)
T ss_dssp HHHHHHTTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSSCCCCEEEECHHHHHHHHHHHHHTSSC--------CC
T ss_pred HHHHHHcCccEEEEecCCCChHHHHHh---cCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCC--------Cc
Confidence 34566789999888654332 234444 34555432 2334566666554 48
Q ss_pred EEEeecchh-----hchHHHHHHHHhcCCcee----e--cCcc----ccccchHHHHHH-HhcCChH----HHHHHHHHH
Q 017159 219 IGVLATDAT-----LSAGFYQEKLQNQGFEVV----L--PDKA----TMEHVIIPTIEA-LNHRDME----GARNLLRIG 278 (376)
Q Consensus 219 VGlLaT~~T-----~~s~~Y~~~L~~~G~evv----~--p~~~----~q~~~l~~~ie~-lk~G~~~----~a~~~l~~~ 278 (376)
|++++.+.. .+..-|.+.++++|+++. . .... ..+. ....++. ++. ..+ ........+
T Consensus 125 I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~l~~-~~~ai~~~~d~~a~g~ 202 (288)
T 2qu7_A 125 VGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYS-GYEATKTLLSK-GIKGIVATNHLLLLGA 202 (288)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHH-HHHHHHHHHHT-TCCEEEECSHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHH-HHHHHHHHHhc-CCCEEEECCcHHHHHH
Confidence 999986421 122337888888887642 2 2211 1111 1111222 222 211 011222334
Q ss_pred HHHHhhCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 279 IQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 279 i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
++.+.+.| -|.-|+|+...+... ...+. +..|+ +...+++.+++.+..
T Consensus 203 ~~al~~~g~~vP~di~vvg~d~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~ 255 (288)
T 2qu7_A 203 LQAIKESEKEIKKDVIIVGFDDSYWNE-IYTPK-LTVISQPVKEMGQVAAKMIYK 255 (288)
T ss_dssp HHHHHHSSCCBTTTBEEEEESCCTHHH-HSSSC-CCEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCceEEEEeCChHHHh-hcCCC-ccEEecCHHHHHHHHHHHHHH
Confidence 45555555 367788888777431 11121 23333 455666666666654
No 62
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=92.86 E-value=1.1 Score=41.31 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=48.8
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-----------------------------HHHHHHHHHHh--
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-----------------------------GECVAKELKEA-- 206 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-----------------------------veat~~~~~~~-- 206 (376)
.++.|.+.++|.|++....+...+. ....++|++-+ +..+++.+.+.
T Consensus 54 ~~~~l~~~~vDgII~~~~~~~~~~~--~~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~~~~~~~~~~l~~~~p 131 (295)
T 3lft_A 54 MSKQLVANGNDLVVGIATPAAQGLA--SATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIKALTP 131 (295)
T ss_dssp HHHHHTTSSCSEEEEESHHHHHHHH--HHCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEEECCCHHHHHHHHHHHCT
T ss_pred HHHHHHhcCCCEEEECCcHHHHHHH--HcCCCCCEEEEeccChhhcCccccccCCCCcEEEEECCccHHHHHHHHHHhCC
Confidence 3456778899998876532222222 22346777643 12456777776
Q ss_pred cCCCCcCCCCceEEEeecchhh----chHHHHHHHHhcCCcee
Q 017159 207 KLKPLEAGSGVRIGVLATDATL----SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 207 g~k~~~~~~~~rVGlLaT~~T~----~s~~Y~~~L~~~G~evv 245 (376)
|++ |||+++.+... +..-|++.++++|+++.
T Consensus 132 g~~--------~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~ 166 (295)
T 3lft_A 132 NVK--------TIGALYSSSEDNSKTQVEEFKAYAEKAGLTVE 166 (295)
T ss_dssp TCC--------EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCc--------EEEEEeCCCCcchHHHHHHHHHHHHHcCCEEE
Confidence 654 99999765421 22348888999999875
No 63
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=92.71 E-value=4.2 Score=36.78 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=83.1
Q ss_pred HHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.+.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|.+ ||
T Consensus 58 ~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~I 128 (287)
T 3bbl_A 58 DLIRSGNVDGFVLSSINYNDPRVQFLLK-QKFPFVAFGRSNPDWDFAWVDIDGTAGTRQAVEYLIGRGHR--------RI 128 (287)
T ss_dssp HHHHTTCCSEEEECSCCTTCHHHHHHHH-TTCCEEEESCCSTTCCCCEEEECHHHHHHHHHHHHHHHTCC--------CE
T ss_pred HHHHcCCCCEEEEeecCCCcHHHHHHHh-cCCCEEEECCcCCCCCCCEEEeccHHHHHHHHHHHHHCCCC--------eE
Confidence 44667899988875532 2344566654 35665533 33456777777764 89
Q ss_pred EEeecchh-----hchHHHHHHHHhcCCcee----ecCccccccchHHHHHH-Hh-cC--ChHH----HHHHHHHHHHHH
Q 017159 220 GVLATDAT-----LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LN-HR--DMEG----ARNLLRIGIQLL 282 (376)
Q Consensus 220 GlLaT~~T-----~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk-~G--~~~~----a~~~l~~~i~~L 282 (376)
++++.+.. .+..-|.+.++++|+++. .......+. -...++. ++ .+ ..+. .......+++.+
T Consensus 129 ~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al 207 (287)
T 3bbl_A 129 AILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEV-GRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAA 207 (287)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHH-HHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHH
T ss_pred EEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHH-HHHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHHH
Confidence 99976432 122338888999887642 222111111 1122333 33 22 2211 122333445556
Q ss_pred hhCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 283 LVRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 283 ~~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.+.| -|.-|+|+...+... ...+ .+..|+ +...+++.+++.+..
T Consensus 208 ~~~G~~vP~di~vig~d~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~ 256 (287)
T 3bbl_A 208 RERGLTIGTDLAIIGFDDAPMVQ-YLFP-PLSSVRQPIAEAGRKCIELLVA 256 (287)
T ss_dssp HHTTCCBTTTBEEEEESCCTTGG-GSSS-CCEEEECCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCEEEEEECCchHhh-ccCC-CCceEcCCHHHHHHHHHHHHHH
Confidence 5555 377888998877532 1122 233443 456677777766654
No 64
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=92.64 E-value=1.3 Score=41.65 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=81.7
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
++.|.+.++|.|++... ++.+. ..++|++-+ ...+++++.+.|. ++|
T Consensus 112 ~~~l~~~~vdGiIi~~~-----~~~~~-~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~--------~~I 177 (333)
T 3jvd_A 112 MESLISIQAAGIIHVPV-----VGSIA-PEGIPMVQLTRGELGPGFPRVLCDDEAGFFQLTESVLGGSG--------MNI 177 (333)
T ss_dssp HHHHHHHTCSEEEECCC-----TTCCC--CCSCEEEECC----CCSCEEEECHHHHHHHHHHHHCCSSS--------CEE
T ss_pred HHHHHhCCCCEEEEcch-----HHHHh-hCCCCEEEECccCCCCCCCEEEEChHHHHHHHHHHHHHCCC--------CeE
Confidence 34566789999988765 22222 235665543 2234455555554 499
Q ss_pred EEeecchhh-----chHHHHHHHHhcCCceeec-CccccccchHHHHHH-HhcCChHH----HHHHHHHHHHHHhhCC--
Q 017159 220 GVLATDATL-----SAGFYQEKLQNQGFEVVLP-DKATMEHVIIPTIEA-LNHRDMEG----ARNLLRIGIQLLLVRA-- 286 (376)
Q Consensus 220 GlLaT~~T~-----~s~~Y~~~L~~~G~evv~p-~~~~q~~~l~~~ie~-lk~G~~~~----a~~~l~~~i~~L~~~g-- 286 (376)
|+++.+... +..-|.+.++++|++.+.. .....+. -...++. +..+.++. .......+++.+.+.|
T Consensus 178 ~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~ai~~~nd~~A~g~~~al~~~G~~ 256 (333)
T 3jvd_A 178 AALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVES-GEEMAQVVFNNGLPDALIVASPRLMAGVMRAFTRLNVR 256 (333)
T ss_dssp EEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSHHH-HHHHHHHHHHTCCCSEEEECCHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHHCCCCEEEecCCCCHHH-HHHHHHHHhcCCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 999876321 2233888899999984443 3222221 1112222 33332211 1222334455565555
Q ss_pred --CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 287 --VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 287 --aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
-|.-|+|+.+.++.. ...+..-.+-=+...+++.+++.+...
T Consensus 257 vP~disvig~D~~~~~~-~~~p~lttv~~~~~~~g~~Av~~L~~~ 300 (333)
T 3jvd_A 257 VPHDVVIGGYDDPEWYS-FVGAGITTFVPPHEEMGKEAVRLLVDL 300 (333)
T ss_dssp TTTTCEEEEESCCGGGG-GSTTSCEEEECCHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECChHHHH-hcCCCceEEecCHHHHHHHHHHHHHHH
Confidence 478899999888542 222221233345666777777766553
No 65
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=92.54 E-value=1.3 Score=41.38 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc-------------------------HHHHHHHHHHh-cCCCC
Q 017159 159 RAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV-------------------------GECVAKELKEA-KLKPL 211 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I-------------------------veat~~~~~~~-g~k~~ 211 (376)
++.|.+.++++|+-+..+.... .-.+-+..++|+|.. ....++++.+. |.+
T Consensus 62 ~~~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-- 139 (356)
T 3ipc_A 62 ANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDA-- 139 (356)
T ss_dssp HHHHHHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCC--
Confidence 3455558999988776654332 333444567887752 22345556655 554
Q ss_pred cCCCCceEEEeecchhh---chHHHHHHHHhcCCcee
Q 017159 212 EAGSGVRIGVLATDATL---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 212 ~~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv 245 (376)
||++++.+... ....|++.+++.|++++
T Consensus 140 ------~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~ 170 (356)
T 3ipc_A 140 ------KVAIIHDKTPYGQGLADETKKAANAAGVTEV 170 (356)
T ss_dssp ------CEEEEECSSHHHHHHHHHHHHHHHHTTCCCS
T ss_pred ------EEEEEeCCChHHHHHHHHHHHHHHHcCCEEE
Confidence 99999874322 23347888888998764
No 66
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=92.25 E-value=0.18 Score=47.76 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
-.+.+.+.++.++++|||+|++.|-... ...++.+.+++|+|+|.
T Consensus 171 ~a~~~i~rA~a~~eAGA~~ivlE~vp~~-~a~~It~~l~iP~igIG 215 (275)
T 3vav_A 171 GAAQLLRDARAVEEAGAQLIVLEAVPTL-VAAEVTRELSIPTIGIG 215 (275)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESCCHH-HHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHHHcCCCEEEecCCCHH-HHHHHHHhCCCCEEEEc
Confidence 3456677788899999999999999765 88999999999999983
No 67
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=91.99 E-value=4.7 Score=37.63 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=83.7
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|++ |
T Consensus 117 i~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~ 187 (344)
T 3kjx_A 117 LYEMLSWRPSGVIIAGLEHSEAARAMLDA-AGIPVVEIMDSDGKPVDAMVGISHRRAGREMAQAILKAGYR--------R 187 (344)
T ss_dssp HHHHHTTCCSEEEEECSCCCHHHHHHHHH-CSSCEEEEEECSSCCSSEEEEECHHHHHHHHHHHHHHHTCC--------S
T ss_pred HHHHHhCCCCEEEEECCCCCHHHHHHHHh-CCCCEEEEeCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------e
Confidence 3456678999988865432 233555543 36666544 33457778888775 8
Q ss_pred EEEeecch----hh--chHHHHHHHHhcCCceee----cCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHHH
Q 017159 219 IGVLATDA----TL--SAGFYQEKLQNQGFEVVL----PDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQLL 282 (376)
Q Consensus 219 VGlLaT~~----T~--~s~~Y~~~L~~~G~evv~----p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~L 282 (376)
||+++.+. +. +..-|.+.++++|+++.. ......+. -...++. +..+ .++ ........+++.+
T Consensus 188 I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al 266 (344)
T 3kjx_A 188 IGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAK-GREMTQAMLERSPDLDFLYYSNDMIAAGGLLYL 266 (344)
T ss_dssp CCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHH-HHHHHHHHHHHSTTCCEEEESSHHHHHHHHHHH
T ss_pred EEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHH-HHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHH
Confidence 99998653 11 222388889998876431 11111110 1111222 2222 111 0122233444555
Q ss_pred hhCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 283 LVRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 283 ~~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
.+.| -|.-|+|+.+.++..-. .+..-.+-=+...+++.+++.+..
T Consensus 267 ~~~g~~vP~disvvg~D~~~~~~~~-~p~lttv~~~~~~~g~~av~~l~~ 315 (344)
T 3kjx_A 267 LEQGIDIPGQIGLAGFNNVELLQGL-PRKLATMDACRLEIGRKAAEIIAK 315 (344)
T ss_dssp HHTTCCTTTTCEEECSBCCGGGGGS-SSCCBEEBCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCceEEEEECChHHHhcc-CCCccEEeCCHHHHHHHHHHHHHH
Confidence 5555 47889999888764221 221112333456667777766654
No 68
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=91.69 E-value=6.8 Score=35.35 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=80.2
Q ss_pred HHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 160 AFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rVG 220 (376)
+.+.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|. +||+
T Consensus 59 ~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~--------~~i~ 129 (290)
T 3clk_A 59 LTAIERPVMGILLLSIALTDDNLQLLQS-SDVPYCFLSMGFDDDRPFISSDDEDIGYQATNLLINEGH--------RQIG 129 (290)
T ss_dssp HHHHSSCCSEEEEESCC----CHHHHHC-C--CEEEESCC--CCSCEEECCHHHHHHHHHHHHHTTTC--------CSEE
T ss_pred HHHHhcCCCEEEEecccCCHHHHHHHHh-CCCCEEEEcCCCCCCCCEEEeChHHHHHHHHHHHHHcCC--------CEEE
Confidence 44667899988875543 2334666654 46776543 2345566666655 3899
Q ss_pred Eeecchh-----hchHHHHHHHHhcCCce----eecCccccccchHHHHHHHhc-CChH----HHHHHHHHHHHHHhhCC
Q 017159 221 VLATDAT-----LSAGFYQEKLQNQGFEV----VLPDKATMEHVIIPTIEALNH-RDME----GARNLLRIGIQLLLVRA 286 (376)
Q Consensus 221 lLaT~~T-----~~s~~Y~~~L~~~G~ev----v~p~~~~q~~~l~~~ie~lk~-G~~~----~a~~~l~~~i~~L~~~g 286 (376)
+++.+.. .+..-|.+.++++|+++ +.......+. -...++.+-. ...+ ........+++.+.+.|
T Consensus 130 ~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~al~~~g 208 (290)
T 3clk_A 130 IAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTS-GEQAMKAFGKNTDLTGIIAASDMTAIGILNQASSFG 208 (290)
T ss_dssp EESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHH-HHHHHHHHCTTCCCSEEEESSHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhh-HHHHHHHHhccCCCcEEEECCcHHHHHHHHHHHHcC
Confidence 9976421 12334788899988764 2222211111 1122333321 1111 01222333445555555
Q ss_pred ----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 287 ----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 287 ----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
-|.-|+|+...+... ...+ .+..|+ +...+++.+++.+...
T Consensus 209 ~~vP~di~vvg~d~~~~~~-~~~p-~lttv~~~~~~~g~~av~~l~~~ 254 (290)
T 3clk_A 209 IEVPKDLSIVSIDGTEMCK-ITRP-QLTSISQDFFQMGVTGVQQIHQS 254 (290)
T ss_dssp CCTTTTCEEEEEECCTHHH-HSSS-CCEEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEeCChHHHh-hcCC-CceEEecCHHHHHHHHHHHHHHH
Confidence 377888887777431 1122 133343 5666777777776553
No 69
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=91.66 E-value=5.8 Score=35.57 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=81.7
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|.+.++|.|++.... ....++.+++..++|++-+ ...+++++.+.|.+ +
T Consensus 70 ~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~G~~--------~ 141 (296)
T 3brq_A 70 IQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQ--------E 141 (296)
T ss_dssp HHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCSSSGGGEECCCHHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHhcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEccccCCCCCCEEEEchHHHHHHHHHHHHHCCCc--------e
Confidence 345667899988875543 2344666654246676533 23455667776654 8
Q ss_pred EEEeecchh---h--chHHHHHHHHhcCCcee----ecCccccccchHHHHHHH-hcC-ChH----HHHHHHHHHHHHHh
Q 017159 219 IGVLATDAT---L--SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEAL-NHR-DME----GARNLLRIGIQLLL 283 (376)
Q Consensus 219 VGlLaT~~T---~--~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~l-k~G-~~~----~a~~~l~~~i~~L~ 283 (376)
|++++.+.. . +..-|.+.++++|+++. .......+. ....++.+ ..+ ..+ ........+++.+.
T Consensus 142 I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 220 (296)
T 3brq_A 142 IAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPAS-GAEGVEMLLERGAKFSALVASNDDMAIGAMKALH 220 (296)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHH-HHHHHHHHHTC--CCSEEEESSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhH-HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHH
Confidence 999986532 1 22337888888887643 221111110 11223332 221 111 01112223334444
Q ss_pred hCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 284 VRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 284 ~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
+.| -|.-|+|+...+... ...+ .+..|+ +...+++.+++.+...
T Consensus 221 ~~g~~vP~di~vvg~d~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~~ 269 (296)
T 3brq_A 221 ERGVAVPEQVSVIGFDDIAIAP-YTVP-ALSSVKIPVTEMIQEIIGRLIFM 269 (296)
T ss_dssp HHTCCTTTTCEEEEESCCTTGG-GSSS-CCEEEECCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCceEEEeecCchhhh-ccCC-CceeeeCCHHHHHHHHHHHHHHH
Confidence 433 477888888777432 1222 233443 5566777777776553
No 70
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=91.59 E-value=7.4 Score=34.95 Aligned_cols=166 Identities=11% Similarity=0.122 Sum_probs=84.8
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc--------------------HHHHHHHHHHh--cCCCCcC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV--------------------GECVAKELKEA--KLKPLEA 213 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~--g~k~~~~ 213 (376)
++.|.+.++|.|++...... ..++.+.+ .++|++-+ ...+++++.+. |.+.
T Consensus 57 ~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~--- 132 (293)
T 3l6u_A 57 ILEFVHLKVDAIFITTLDDVYIGSAIEEAKK-AGIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKNELIKQTG--- 132 (293)
T ss_dssp HHHHHHTTCSEEEEECSCTTTTHHHHHHHHH-TTCCEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHcCCCEEEEecCChHHHHHHHHHHHH-cCCCEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHHHhccCCC---
Confidence 34566789999887655444 33555543 25665543 33456667663 5420
Q ss_pred CCCceEEEeecchh-----hchHHHHHHHHhc-CCceeec--CccccccchHHHHHH-HhcC-ChH----HHHHHHHHHH
Q 017159 214 GSGVRIGVLATDAT-----LSAGFYQEKLQNQ-GFEVVLP--DKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGI 279 (376)
Q Consensus 214 ~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~-G~evv~p--~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i 279 (376)
...++|++++.+.. .+..-|.+.++++ |+++... .....+. ....++. +..+ +++ ........++
T Consensus 133 ~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~ 211 (293)
T 3l6u_A 133 RSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVT-SERVMRQVIDSGIPFDAVYCHNDDIAMGVL 211 (293)
T ss_dssp CSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHH-HHHHHHHHHHTTCCCSEEEESSHHHHHHHH
T ss_pred CCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHH-HHHHHHHHHHhCCCCCEEEECCchHHHHHH
Confidence 11138999974321 1223377888888 8876531 1111111 1112222 2222 111 1122333455
Q ss_pred HHHhhCCC-CEEEECCCccccccCCC-CCCCCeee-ehHHHHHHHHHHHHHhc
Q 017159 280 QLLLVRAV-NAVIIGSDEMQGVLPKD-DPLLKKCI-DPMDALARSTVTWARSN 329 (376)
Q Consensus 280 ~~L~~~ga-DaVILGCTElpll~~~~-~~~~vpvI-Dp~~~lA~a~v~~a~~~ 329 (376)
+.+.+.|. |.-|+|+...+...... .+..+..| -+...+++.+++.+...
T Consensus 212 ~al~~~g~~di~vig~d~~~~~~~~~~~~~~lttv~~~~~~~g~~a~~~l~~~ 264 (293)
T 3l6u_A 212 EALKKAKISGKIVVGIDGNRAILEAVDMKSMDATVVQSAEEMMKVAFSALKLH 264 (293)
T ss_dssp HHHHHTTCCCCEEEEEECCHHHHHHHHTTSSCEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCeEEEEecCCHHHHHHHHcCCccEEEeCCHHHHHHHHHHHHHHH
Confidence 55666665 89999998887542211 11112333 35566777777666553
No 71
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=91.53 E-value=1.9 Score=40.80 Aligned_cols=158 Identities=14% Similarity=0.105 Sum_probs=83.7
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
.+.|.+.++|.|++.+... ...++.+.+. ++|++-+ ...+++++.+.|++ |
T Consensus 121 ~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~r--------~ 191 (366)
T 3h5t_A 121 QQLVNNAAVDGVVIYSVAKGDPHIDAIRAR-GLPAVIADQPAREEGMPFIAPNNRKAIAPAAQALIDAGHR--------K 191 (366)
T ss_dssp HHHHHTCCCSCEEEESCCTTCHHHHHHHHH-TCCEEEESSCCSCTTCCEEEECHHHHTHHHHHHHHHTTCC--------S
T ss_pred HHHHHhCCCCEEEEecCCCChHHHHHHHHC-CCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------c
Confidence 3456778999988876532 3345555432 4555433 34567788888765 9
Q ss_pred EEEeecc--------------------hh--hchHHHHHHHHhcCCcee----e-cCccccccchHHHHHH-HhcC-ChH
Q 017159 219 IGVLATD--------------------AT--LSAGFYQEKLQNQGFEVV----L-PDKATMEHVIIPTIEA-LNHR-DME 269 (376)
Q Consensus 219 VGlLaT~--------------------~T--~~s~~Y~~~L~~~G~evv----~-p~~~~q~~~l~~~ie~-lk~G-~~~ 269 (376)
||+++.+ .+ .+..-|.+.++++|+++. + ......+. -...++. +..+ .++
T Consensus 192 I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ 270 (366)
T 3h5t_A 192 IGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQH-NFEVAKELLETHPDLT 270 (366)
T ss_dssp EEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHH-HHHHHHHHHHHCTTCC
T ss_pred EEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHH-HHHHHHHHHcCCCCCc
Confidence 9999831 11 122348888999987632 1 11111111 1111222 2222 111
Q ss_pred ----HHHHHHHHHHHHHhhCCC----CEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 270 ----GARNLLRIGIQLLLVRAV----NAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 270 ----~a~~~l~~~i~~L~~~ga----DaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
........+++.+.+.|. |.-|+|+...+..... +. -.+-=+...+++.+++.+...
T Consensus 271 ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD~~~~~~~~--~l-ttv~q~~~~~G~~Av~~L~~~ 335 (366)
T 3h5t_A 271 AVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGTHMALAR--DL-TTVIQPNKLKGFKAGETLLKM 335 (366)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCHHHHHT--TC-CEEECCHHHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHcCCCCCCceEEEEECCChhhcCC--Cc-cEEEeCHHHHHHHHHHHHHHH
Confidence 012223344555656553 7888898888765411 11 233345566677777666553
No 72
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=91.51 E-value=7.4 Score=36.06 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=82.6
Q ss_pred HHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|++ ||
T Consensus 113 ~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I 183 (332)
T 2o20_A 113 ETFLSKQVDGIVYMGSSLDEKIRTSLKN-SRTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTKKLIDSGNK--------KI 183 (332)
T ss_dssp HHHHHTTCSEEEECSSCCCHHHHHHHHH-HCCCEEEESCCCTTSCSCEEECCHHHHHHHHHHHHHHTTCS--------SE
T ss_pred HHHHhCCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEEccccCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------eE
Confidence 456678999888765432 334556643 34554432 34456777777764 89
Q ss_pred EEeecchh---h--chHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcCChH----HHHHHHHHHHHHHhhC
Q 017159 220 GVLATDAT---L--SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHRDME----GARNLLRIGIQLLLVR 285 (376)
Q Consensus 220 GlLaT~~T---~--~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G~~~----~a~~~l~~~i~~L~~~ 285 (376)
|+++.+.. . +..-|.+.++++|+++. .......+. -...++. ++. .++ ........+++.+.+.
T Consensus 184 ~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~-~~~ai~~~~d~~A~g~~~al~~~ 261 (332)
T 2o20_A 184 AYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQ-GKALAERLLER-GATSAVVSHDTVAVGLLSAMMDK 261 (332)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHH-HHHHHHHHHHT-TCCEEEESCHHHHHHHHHHHHHT
T ss_pred EEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHH-HHHHHHHHhcc-CCCEEEECChHHHHHHHHHHHHc
Confidence 99986532 1 12237888999987643 221111110 1111222 222 211 0112223344555555
Q ss_pred C----CCEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHhc
Q 017159 286 A----VNAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARSN 329 (376)
Q Consensus 286 g----aDaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~~ 329 (376)
| -|.-|+|+...+... ...+. +..| =+...+++.+++.+...
T Consensus 262 G~~vP~disvig~D~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~~ 308 (332)
T 2o20_A 262 GVKVPEDFEIISGANSPITQ-YTYPT-LTSVNQPLYDLGAVAMRLLTKL 308 (332)
T ss_dssp TCCTTTTCEEEESSCCGGGG-SBSSC-CEEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCccCEEEEEeCChHHHh-hCCCc-eEEEeeCHHHHHHHHHHHHHHH
Confidence 5 378899998888642 22222 3334 35566777777776553
No 73
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=91.26 E-value=1 Score=40.09 Aligned_cols=135 Identities=14% Similarity=0.108 Sum_probs=72.7
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH---HHHHHHHhcCCCCcCCCCceEEEeecchhhch-HHH
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC---VAKELKEAKLKPLEAGSGVRIGVLATDATLSA-GFY 233 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea---t~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s-~~Y 233 (376)
.++.+ +.|+|+|+=.-.| .+.|++.+++||+.|--. ..+.++...- .++|||+++-+..+.. ..+
T Consensus 44 ~a~~~-~~~~dVIISRGgt----a~~lr~~~~iPVV~I~~s~~Dil~al~~a~~------~~~kIavvg~~~~~~~~~~~ 112 (196)
T 2q5c_A 44 IAFGL-QDEVDAIISRGAT----SDYIKKSVSIPSISIKVTRFDTMRAVYNAKR------FGNELALIAYKHSIVDKHEI 112 (196)
T ss_dssp HHHHH-TTTCSEEEEEHHH----HHHHHTTCSSCEEEECCCHHHHHHHHHHHGG------GCSEEEEEEESSCSSCHHHH
T ss_pred HHHHh-cCCCeEEEECChH----HHHHHHhCCCCEEEEcCCHhHHHHHHHHHHh------hCCcEEEEeCcchhhHHHHH
Confidence 34556 7899966655444 456778889999987221 1222222210 1249999999877654 334
Q ss_pred HHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCCCCCCeeee
Q 017159 234 QEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCID 313 (376)
Q Consensus 234 ~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~~~~vpvID 313 (376)
.+.| |+++..-.-. ..++. ...++.+.++|+++| +|++-..-+.+.. +.+.-+|.
T Consensus 113 ~~ll---~~~i~~~~~~----------------~~~e~----~~~i~~l~~~G~~vv-VG~~~~~~~A~~~-Gl~~vli~ 167 (196)
T 2q5c_A 113 EAML---GVKIKEFLFS----------------SEDEI----TTLISKVKTENIKIV-VSGKTVTDEAIKQ-GLYGETIN 167 (196)
T ss_dssp HHHH---TCEEEEEEEC----------------SGGGH----HHHHHHHHHTTCCEE-EECHHHHHHHHHT-TCEEEECC
T ss_pred HHHh---CCceEEEEeC----------------CHHHH----HHHHHHHHHCCCeEE-ECCHHHHHHHHHc-CCcEEEEe
Confidence 4443 5554322111 11112 345567888999975 4554433333222 22224566
Q ss_pred hHHHHHHHHHHHHHh
Q 017159 314 PMDALARSTVTWARS 328 (376)
Q Consensus 314 p~~~lA~a~v~~a~~ 328 (376)
+...-++++++.|..
T Consensus 168 sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 168 SGEESLRRAIEEALN 182 (196)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 656666666655544
No 74
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=91.23 E-value=1.7 Score=41.09 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=48.0
Q ss_pred HHHHH-cCCcEEEEeCCCchhh-HHHHhccCCCCeecc--------------------------HHHHHHHHHHhcCCCC
Q 017159 160 AFLEQ-AGARCIVMPCHISHAW-HGDVSEGCSIPFLHV--------------------------GECVAKELKEAKLKPL 211 (376)
Q Consensus 160 ~~L~~-~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I--------------------------veat~~~~~~~g~k~~ 211 (376)
+.|.+ .++++|+-+..+.... .-.+-+..++|+|.. ....++.+.+.|.+
T Consensus 64 ~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~-- 141 (375)
T 3i09_A 64 REWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGK-- 141 (375)
T ss_dssp HHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCc--
Confidence 34443 7898888776554332 223333446666543 23455666666554
Q ss_pred cCCCCceEEEeecchhh---chHHHHHHHHhcCCceee
Q 017159 212 EAGSGVRIGVLATDATL---SAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 212 ~~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv~ 246 (376)
||+++..+... ....|++.+++.|.+++.
T Consensus 142 ------~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~ 173 (375)
T 3i09_A 142 ------TWFFLTADYAFGKALEKNTADVVKANGGKVLG 173 (375)
T ss_dssp ------EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ------eEEEEecccHHHHHHHHHHHHHHHHcCCEEee
Confidence 99999775532 234478888999988753
No 75
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=91.18 E-value=1.8 Score=40.12 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=49.1
Q ss_pred HHHHHHc-CCcEEEEeCCCchhh-HHHHhccCCCCeecc-----------------------HHHHHHHHHHhcCCCCcC
Q 017159 159 RAFLEQA-GARCIVMPCHISHAW-HGDVSEGCSIPFLHV-----------------------GECVAKELKEAKLKPLEA 213 (376)
Q Consensus 159 ~~~L~~~-Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I-----------------------veat~~~~~~~g~k~~~~ 213 (376)
++.|... ++++|+.+..+.... .-.+-+..++|+|.. ....++.+.+.|.+
T Consensus 61 ~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---- 136 (362)
T 3snr_A 61 ARRFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLPITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVK---- 136 (362)
T ss_dssp HHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCCCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHhccCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCCccccCCCCcEEecCCChHHHHHHHHHHHHhcCCC----
Confidence 3445555 899999876654322 222333446776653 23456667776654
Q ss_pred CCCceEEEeecchhh---chHHHHHHHHhcCCceee
Q 017159 214 GSGVRIGVLATDATL---SAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 214 ~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv~ 246 (376)
||+++...... ....|++.++++|++++.
T Consensus 137 ----~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~ 168 (362)
T 3snr_A 137 ----TVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVG 168 (362)
T ss_dssp ----EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ----EEEEEecCchHHHHHHHHHHHHHHHcCCEEEE
Confidence 99999754432 233478889999998653
No 76
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=90.90 E-value=0.98 Score=41.02 Aligned_cols=161 Identities=9% Similarity=0.046 Sum_probs=82.0
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGS 215 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~ 215 (376)
++.|...++|.|++...... ..++.+++. ++|++-+ ...+++++.+.|. .
T Consensus 62 i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~------~ 134 (304)
T 3gbv_A 62 SQAVIEEQPDGVMFAPTVPQYTKGFTDALNEL-GIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLAV------N 134 (304)
T ss_dssp HHHHHTTCCSEEEECCSSGGGTHHHHHHHHHH-TCCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHHHST------T
T ss_pred HHHHHhcCCCEEEECCCChHHHHHHHHHHHHC-CCeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHHHhC------C
Confidence 35567789998887665432 225555432 4554432 3446777888775 1
Q ss_pred CceEEEeecc---------hhhchHHHHHHHHhcCCceeec----CccccccchHHHHHH-HhcC-ChH----HHHHHHH
Q 017159 216 GVRIGVLATD---------ATLSAGFYQEKLQNQGFEVVLP----DKATMEHVIIPTIEA-LNHR-DME----GARNLLR 276 (376)
Q Consensus 216 ~~rVGlLaT~---------~T~~s~~Y~~~L~~~G~evv~p----~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~ 276 (376)
.++|++++.. ...+..-|.+.++++|+++... .....+. ....++. +..+ +++ .... ..
T Consensus 135 ~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~-a~ 212 (304)
T 3gbv_A 135 DREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIE-DSRMLDDFFREHPDVKHGITFNSK-VY 212 (304)
T ss_dssp CSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSC-HHHHHHHHHHHCTTCCEEEESSSC-TH
T ss_pred CCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHH-HHHHHHHHHHhCCCeEEEEEcCcc-hH
Confidence 2499999721 1223334888899988764321 1111111 1112222 2221 111 0111 22
Q ss_pred HHHHHHhhCCC-CEEEECCCccccccCCCCCCCC--eeeehHHHHHHHHHHHHHh
Q 017159 277 IGIQLLLVRAV-NAVIIGSDEMQGVLPKDDPLLK--KCIDPMDALARSTVTWARS 328 (376)
Q Consensus 277 ~~i~~L~~~ga-DaVILGCTElpll~~~~~~~~v--pvIDp~~~lA~a~v~~a~~ 328 (376)
.+++.+.+.|. |..|+|+...+.......+... .+-=+...+++.+++.+..
T Consensus 213 g~~~al~~~g~~di~vig~d~~~~~~~~~~~~~~~~tv~~~~~~~g~~av~~l~~ 267 (304)
T 3gbv_A 213 IIGEYLQQRRKSDFSLIGYDLLERNVTCLKEGTVSFLIAQQPELQGFNSIKTLCD 267 (304)
T ss_dssp HHHHHHHHTTCCSCEEEEESCCHHHHHHHHHTSEEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcEEEEeCCCHHHHHHHHcCceEEEEEeCHHHHHHHHHHHHHH
Confidence 34555666675 8889998888763222111112 2333455666666666654
No 77
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=90.89 E-value=7.4 Score=34.87 Aligned_cols=160 Identities=12% Similarity=0.110 Sum_probs=81.7
Q ss_pred HHHHHHcCCcEEEEeCCCc------hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcC
Q 017159 159 RAFLEQAGARCIVMPCHIS------HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEA 213 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA------H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~ 213 (376)
++.|.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|.+
T Consensus 64 ~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~---- 138 (298)
T 3tb6_A 64 LENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEK-NGIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHT---- 138 (298)
T ss_dssp HHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHH-TTCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHCCCCEEEEecccccccCCcHHHHHHHHh-cCCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCC----
Confidence 3456678999988765432 134555544 36676543 34567778887764
Q ss_pred CCCceEEEeecchh----hchHHHHHHHHhcCCcee----e-cCccccccchHHHHHH-HhcC-C--hHH----HHHHHH
Q 017159 214 GSGVRIGVLATDAT----LSAGFYQEKLQNQGFEVV----L-PDKATMEHVIIPTIEA-LNHR-D--MEG----ARNLLR 276 (376)
Q Consensus 214 ~~~~rVGlLaT~~T----~~s~~Y~~~L~~~G~evv----~-p~~~~q~~~l~~~ie~-lk~G-~--~~~----a~~~l~ 276 (376)
+|++++.+.. .+..-|.+.++++|+++. . .............++. ++.+ + .+. ......
T Consensus 139 ----~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~ 214 (298)
T 3tb6_A 139 ----HMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIAL 214 (298)
T ss_dssp ----SEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHH
T ss_pred ----cEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHH
Confidence 8999875443 122337888888887642 1 1111110000111222 2221 1 211 122333
Q ss_pred HHHHHHhhCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 277 IGIQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 277 ~~i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
.+++.+.+.| -|.-|+|+...+..... .+....+-=+...+++.+++.+..
T Consensus 215 g~~~al~~~g~~vP~di~vvg~d~~~~~~~~-~p~lttv~~~~~~~g~~a~~~l~~ 269 (298)
T 3tb6_A 215 KVIDMLREMDLKVPEDMSIVGYDDSHFAQIS-EVKLTSVKHPKSVLGKAAAKYVID 269 (298)
T ss_dssp HHHHHHHHTTCCTTTTCEEECSBCCTHHHHS-SSCCBEEECCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEecCCcHHHhcc-CCCCceEecCHHHHHHHHHHHHHH
Confidence 4455555555 47788898887753211 111112223345666666666655
No 78
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=90.81 E-value=1.8 Score=41.03 Aligned_cols=79 Identities=13% Similarity=0.018 Sum_probs=47.3
Q ss_pred HHHH-HcCCcEEEEeCCCchhh-HHHHhccCCCCeecc--------------------------HHHHHHHHHHhcCCCC
Q 017159 160 AFLE-QAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV--------------------------GECVAKELKEAKLKPL 211 (376)
Q Consensus 160 ~~L~-~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I--------------------------veat~~~~~~~g~k~~ 211 (376)
+.|. +.|+++|+-+.++.... .-.+-+..++|+|.. ....++.+.+.|.+
T Consensus 66 ~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~-- 143 (379)
T 3n0w_A 66 REWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYK-- 143 (379)
T ss_dssp HHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCc--
Confidence 3444 37899887766543322 223333345665543 23456666666554
Q ss_pred cCCCCceEEEeecchhh---chHHHHHHHHhcCCceee
Q 017159 212 EAGSGVRIGVLATDATL---SAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 212 ~~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv~ 246 (376)
||+++..+... ....|++.+++.|.+++.
T Consensus 144 ------~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~ 175 (379)
T 3n0w_A 144 ------TWFLMLPDAAYGDLMNAAIRRELTAGGGQIVG 175 (379)
T ss_dssp ------EEEEEEESSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred ------EEEEEecccchhHHHHHHHHHHHHHcCCEEEE
Confidence 99999865432 234478888888988763
No 79
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=90.77 E-value=0.27 Score=47.04 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCee-ccHH------HHHHHHHHhcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFL-HVGE------CVAKELKEAKLK 209 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl-~Ive------at~~~~~~~g~k 209 (376)
+.+.++.++++|||+|++.|-+.-..+.++.+.+++|++ |+.+ .+.+++.+.|++
T Consensus 169 ai~ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~~~eL~~~G~~ 230 (295)
T 1xg4_A 169 AIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVA 230 (295)
T ss_dssp HHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHcCCCEEEEecccCCCCCCCHHHHHHcCCC
Confidence 445566789999999999997643457888888899985 6653 257788888874
No 80
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=90.74 E-value=6.7 Score=35.23 Aligned_cols=160 Identities=12% Similarity=0.025 Sum_probs=82.6
Q ss_pred HHHHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCC
Q 017159 158 KRAFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~ 216 (376)
..+.+.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|.+
T Consensus 61 ~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~------- 132 (292)
T 3k4h_A 61 VVKMVQGRQIGGIILLYSRENDRIIQYLHE-QNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHK------- 132 (292)
T ss_dssp HHHHHHTTCCCEEEESCCBTTCHHHHHHHH-TTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHcCCCCEEEEeCCCCChHHHHHHHH-CCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc-------
Confidence 3455677899998775433 3344565543 25665432 34567777777764
Q ss_pred ceEEEeecchhh-----chHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHH
Q 017159 217 VRIGVLATDATL-----SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQL 281 (376)
Q Consensus 217 ~rVGlLaT~~T~-----~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~ 281 (376)
+|++++.+... +..-|.+.++++|+++. .......+. ....++. +..+ ..+ ........+++.
T Consensus 133 -~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 210 (292)
T 3k4h_A 133 -QIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRES-GQQAVEELMGLQQPPTAIMATDDLIGLGVLSA 210 (292)
T ss_dssp -CEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHH-HHHHHHHHHTSSSCCSEEEESSHHHHHHHHHH
T ss_pred -eEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHH-HHHHHHHHHcCCCCCcEEEEcChHHHHHHHHH
Confidence 89999865321 22337888999887642 121111111 1122222 3322 211 112223344455
Q ss_pred HhhCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 282 LLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 282 L~~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
+.+.| -|.-|+|+...+..... .+....+-=+...+++.+++.+..
T Consensus 211 l~~~g~~vP~di~vig~d~~~~~~~~-~p~lttv~~~~~~~g~~av~~l~~ 260 (292)
T 3k4h_A 211 LSKKGFVVPKDVSIVSFNNALLSEIA-SPPLSTVDVNIYQLGYEAAKALVD 260 (292)
T ss_dssp HHHTTCCTTTTCEEEEESCCHHHHHS-SSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCeEEEEEecCcchhhcc-CCCceEEecCHHHHHHHHHHHHHH
Confidence 55555 47888898887754211 111112223445566666666554
No 81
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=90.64 E-value=2.3 Score=39.77 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=48.8
Q ss_pred HHHHH-cCCcEEEEeCCCchhh-HHHHhccCCCCeecc------------------------HHHHHHHHHHhcCCCCcC
Q 017159 160 AFLEQ-AGARCIVMPCHISHAW-HGDVSEGCSIPFLHV------------------------GECVAKELKEAKLKPLEA 213 (376)
Q Consensus 160 ~~L~~-~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I------------------------veat~~~~~~~g~k~~~~ 213 (376)
+.|.. .++++|+-+..+.... .-.+.+..++|+|.. ....++.+.+.|.+
T Consensus 65 ~~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---- 140 (368)
T 4eyg_A 65 QELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIK---- 140 (368)
T ss_dssp HHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCC----
Confidence 44544 7999988766543322 223334456777753 23456667666654
Q ss_pred CCCceEEEeecchhhc---hHHHHHHHHhcCCceee
Q 017159 214 GSGVRIGVLATDATLS---AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 214 ~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~ 246 (376)
||+++....... ...|++.++++|++++.
T Consensus 141 ----~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~ 172 (368)
T 4eyg_A 141 ----KVATLTSDYAPGNDALAFFKERFTAGGGEIVE 172 (368)
T ss_dssp ----EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ----EEEEEecCchHhHHHHHHHHHHHHHcCCEEEE
Confidence 999998654322 34478888989988753
No 82
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=90.64 E-value=3.7 Score=36.83 Aligned_cols=155 Identities=15% Similarity=0.052 Sum_probs=76.5
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.|+++++.....++. .++|++-+ ...+++++.+.|.+ +|
T Consensus 54 ~~l~~~~vdgiI~~~~~~~~~~~~----~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~i 121 (280)
T 3gyb_A 54 TSALSMRPDGIIIAQDIPDFTVPD----SLPPFVIAGTRITQASTHDSVANDDFRGAEIATKHLIDLGHT--------HI 121 (280)
T ss_dssp HHHHTTCCSEEEEESCC------------CCCEEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHHTTCC--------SE
T ss_pred HHHHhCCCCEEEecCCCChhhHhh----cCCCEEEECCCCCCCCCCCEEEechHHHHHHHHHHHHHCCCC--------eE
Confidence 345668999988666544333333 55666532 34466777777764 89
Q ss_pred EEeecchhh---chHHHHHHHHhcCCceeecC---ccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHHHhhCC-
Q 017159 220 GVLATDATL---SAGFYQEKLQNQGFEVVLPD---KATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQLLLVRA- 286 (376)
Q Consensus 220 GlLaT~~T~---~s~~Y~~~L~~~G~evv~p~---~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~L~~~g- 286 (376)
++++..... +..-|.+.++++|+++...- ....+. ....++. +..+ ..+ ........+++.+.+.|
T Consensus 122 ~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 200 (280)
T 3gyb_A 122 AHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLGPAVEHA-GYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGL 200 (280)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHH-HHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccCCCCHHH-HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCC
Confidence 999876542 22337788899888765211 111111 1111222 2222 111 01122223334444434
Q ss_pred ---CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 287 ---VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 287 ---aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
-|..|+|+...+.... ..+....+-=+...+++.+++.+..
T Consensus 201 ~vP~di~vvg~d~~~~~~~-~~p~lttv~~~~~~~g~~av~~l~~ 244 (280)
T 3gyb_A 201 RVPEDLSIIGYDNTPLAQT-RLINLTTIDDNSIGVGYNAALLLLS 244 (280)
T ss_dssp CTTTTCEEEEESCCHHHHS-TTTCCCEEECCHHHHHHHHHHHHHH
T ss_pred CCCCeeEEEEECCchHhhc-cCCCceEEecCHHHHHHHHHHHHHH
Confidence 4788999988884322 1221122333445566666666554
No 83
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=90.50 E-value=11 Score=35.20 Aligned_cols=159 Identities=14% Similarity=0.074 Sum_probs=83.6
Q ss_pred HHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 160 AFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
+.|.+.++|.|++..... ...++.+++ .++|++-+ ...+++++.+.|.+ |
T Consensus 116 ~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~ 186 (348)
T 3bil_A 116 EFLTSHGVDGIICVPNEECANQLEDLQK-QGMPVVLVDRELPGDSTIPTATSNPQPGIAAAVELLAHNNAL--------P 186 (348)
T ss_dssp HHHHHTTCSCEEECCCGGGHHHHHHHHH-C-CCEEEESSCCSCC-CCCEEEEECHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHhCCCCEEEEeCCCCChHHHHHHHh-CCCCEEEEcccCCCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------e
Confidence 456677899887765432 234555543 34554422 34456777777764 8
Q ss_pred EEEeecchh---h--chHHHHHHHHhcCCc--eeecCccccccchHHHHHH-HhcCCh---HHHHHHHHHHHHHHhhCC-
Q 017159 219 IGVLATDAT---L--SAGFYQEKLQNQGFE--VVLPDKATMEHVIIPTIEA-LNHRDM---EGARNLLRIGIQLLLVRA- 286 (376)
Q Consensus 219 VGlLaT~~T---~--~s~~Y~~~L~~~G~e--vv~p~~~~q~~~l~~~ie~-lk~G~~---~~a~~~l~~~i~~L~~~g- 286 (376)
|++++.+.. . +..-|.+.++++|++ ++.......+. -...++. +..+.. -........+++.+.+.|
T Consensus 187 I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~v~~~~~~~~~-~~~~~~~ll~~~~~ai~~~nD~~A~g~~~al~~~G~ 265 (348)
T 3bil_A 187 IGYLSGPMDTSTGRERLEDFKAACANSKIGEQLVFLGGYEQSV-GFEGATKLLDQGAKTLFAGDSMMTIGVIEACHKAGL 265 (348)
T ss_dssp EEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCEEECCCSSHHH-HHHHHHHHHHTTCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHcCcCccEEEcCCCCHHH-HHHHHHHHHcCCCCEEEEcChHHHHHHHHHHHHcCC
Confidence 999976532 1 223378889998863 23322211111 1112222 222211 001222334445565555
Q ss_pred ---CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 287 ---VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 287 ---aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
-|.-|+|+...+... ...+..-.+-=+...+++.+++.+...
T Consensus 266 ~vP~disvvG~D~~~~~~-~~~p~lttv~~~~~~~g~~Av~~l~~~ 310 (348)
T 3bil_A 266 VIGKDVSVIGFDTHPLFA-LQPHPLTVIDQNVEQLAQRAVSILTEL 310 (348)
T ss_dssp CBTTTBEEEEESCCGGGG-GSSSCCCEEECCHHHHHHHHHHHHHCC
T ss_pred CCCCCeEEEEeCCcHHHH-hcCCCceEEEcCHHHHHHHHHHHHHHH
Confidence 478899998888532 122221233345677888888887654
No 84
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=90.41 E-value=2.5 Score=39.67 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=48.0
Q ss_pred HHHHHHc-CCcEEEEeCCCchhh-HHHHhccCCCCeecc---------------------------HHHHHHHHHHhcCC
Q 017159 159 RAFLEQA-GARCIVMPCHISHAW-HGDVSEGCSIPFLHV---------------------------GECVAKELKEAKLK 209 (376)
Q Consensus 159 ~~~L~~~-Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I---------------------------veat~~~~~~~g~k 209 (376)
++.|.+. ++++|+.+..+.... .-.+-+..++|+|.. ....++.+.+.|.+
T Consensus 81 ~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 160 (386)
T 3sg0_A 81 ARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAK 160 (386)
T ss_dssp HHHHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCC
Confidence 3445444 799888766543322 223334456777653 23456667666654
Q ss_pred CCcCCCCceEEEeecchhh---chHHHHHHHHhcCCcee
Q 017159 210 PLEAGSGVRIGVLATDATL---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 210 ~~~~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv 245 (376)
||+++...... ....|++.++++|++++
T Consensus 161 --------~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 191 (386)
T 3sg0_A 161 --------KVGYIGFSDAYGEGYYKVLAAAAPKLGFELT 191 (386)
T ss_dssp --------EEEEEEESSHHHHHHHHHHHHHHHHHTCEEC
T ss_pred --------EEEEEecCchHHHHHHHHHHHHHHHcCCEEE
Confidence 99999754432 23447888888998875
No 85
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=90.35 E-value=2.7 Score=37.35 Aligned_cols=161 Identities=11% Similarity=0.073 Sum_probs=82.6
Q ss_pred HHHHHHcC-CcEEEEeCCCch---hhHHHHhccCCCCeecc--------------------HHHHHHHHHHh----cCCC
Q 017159 159 RAFLEQAG-ARCIVMPCHISH---AWHGDVSEGCSIPFLHV--------------------GECVAKELKEA----KLKP 210 (376)
Q Consensus 159 ~~~L~~~G-ad~IVIaCNTAH---~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~----g~k~ 210 (376)
++.|.+.+ +|.|++...... ..++.+++ .++|++-+ ...+++++.+. |.
T Consensus 51 i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~-- 127 (276)
T 3ksm_A 51 LSYHLSQAPPDALILAPNSAEDLTPSVAQYRA-RNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLSKE-- 127 (276)
T ss_dssp HHHHHHHSCCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHHSCTTSC--
T ss_pred HHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHH-CCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHhcCcCCC--
Confidence 34566678 999988764322 33555543 25554432 33466777776 65
Q ss_pred CcCCCCceEEEeecchh-----hchHHHHHHHHhc-CCceeecC--ccccccchHHHHHH-HhcC-ChH----HHHHHHH
Q 017159 211 LEAGSGVRIGVLATDAT-----LSAGFYQEKLQNQ-GFEVVLPD--KATMEHVIIPTIEA-LNHR-DME----GARNLLR 276 (376)
Q Consensus 211 ~~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~-G~evv~p~--~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~ 276 (376)
+||++++.+.. .+..-|.+.++++ |+++.... ....+. ....++. +..+ +.+ .......
T Consensus 128 ------~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~ 200 (276)
T 3ksm_A 128 ------RNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGA-ARSEMLRLLKETPTIDGLFTPNESTTI 200 (276)
T ss_dssp ------EEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHH-HHHHHHHHHHHCSCCCEEECCSHHHHH
T ss_pred ------ceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHH-HHHHHHHHHHhCCCceEEEECCchhhh
Confidence 49999975421 1223377888887 87764221 111111 1111222 2222 111 1122333
Q ss_pred HHHHHHhhCC--CCEEEECCCccccccCCCCCCCC-eee-ehHHHHHHHHHHHHHhc
Q 017159 277 IGIQLLLVRA--VNAVIIGSDEMQGVLPKDDPLLK-KCI-DPMDALARSTVTWARSN 329 (376)
Q Consensus 277 ~~i~~L~~~g--aDaVILGCTElpll~~~~~~~~v-pvI-Dp~~~lA~a~v~~a~~~ 329 (376)
.+++.+.+.| -|..|.|+...+.......+..+ ..| =+...+++.+++.+...
T Consensus 201 g~~~al~~~g~p~di~vig~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l~~~ 257 (276)
T 3ksm_A 201 GALVAIRQSGMSKQFGFIGFDQTEELEAAMYAGEISNLVVQNPEYMGYLAVQRALDL 257 (276)
T ss_dssp HHHHHHHHTTCTTSSEEEEESCCHHHHHHHHTTSSSEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCeEEEEeCCCHHHHHHHHcCCceEEEEeCHHHhHHHHHHHHHHH
Confidence 4455566666 37888898888754222111111 223 24566777777776553
No 86
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=90.28 E-value=4 Score=39.49 Aligned_cols=158 Identities=10% Similarity=0.062 Sum_probs=78.0
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-----------------------HHHHHHHHHHhcCCCCcCCCC
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-----------------------GECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-----------------------veat~~~~~~~g~k~~~~~~~ 216 (376)
+.|.+.++|.|++.... ...++.+++ .++|++-+ ...+++++.+.|.+
T Consensus 70 ~~l~~~~vDGiIi~~~~-~~~~~~l~~-~~iPvV~i~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~r------- 140 (412)
T 4fe7_A 70 DKIKDWLGDGVIADFDD-KQIEQALAD-VDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVN------- 140 (412)
T ss_dssp -----CCCSEEEEETTC-HHHHHHHTT-CCSCEEEEEECCSSGGGSCSSEEEEECHHHHHHHHHHHHHHTTCC-------
T ss_pred hhHhcCCCCEEEEecCC-hHHHHHHhh-CCCCEEEecCCccccccCCCCCEEEeCHHHHHHHHHHHHHHcCCc-------
Confidence 34667899999985433 234555544 36776643 23456777777765
Q ss_pred ceEEEeecchhh-------chHHHHHHHHhcCCceeecCcc-----ccccchHHHHHH-HhcC-ChH----HHHHHHHHH
Q 017159 217 VRIGVLATDATL-------SAGFYQEKLQNQGFEVVLPDKA-----TMEHVIIPTIEA-LNHR-DME----GARNLLRIG 278 (376)
Q Consensus 217 ~rVGlLaT~~T~-------~s~~Y~~~L~~~G~evv~p~~~-----~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~ 278 (376)
+||+++.+... +..-|.+.++++|++..+.... ..+. ....+++ +..+ ..+ ........+
T Consensus 141 -~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~aI~~~nD~~A~g~ 218 (412)
T 4fe7_A 141 -RFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQH-AQNRLADWLQTLPPQTGIIAVTDARARHI 218 (412)
T ss_dssp -EEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHH-HHHHHHHHHHHSCTTEEEEESSHHHHHHH
T ss_pred -eEEEecccccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhh-HHHHHHHHHHhCCCCeEEEEEecHHHHHH
Confidence 99999875432 2233788888888765432211 1110 1111222 2221 111 011222233
Q ss_pred HHHHhhCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 279 IQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 279 i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
++.+.+.| -|.-|+|+...+...-...+....+--+...+++.+++.+..
T Consensus 219 ~~al~~~G~~vP~disvig~D~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~~ 272 (412)
T 4fe7_A 219 LQVCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHR 272 (412)
T ss_dssp HHHHHHHTCCTTTTSEEEESSCCSCSSSCCSSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCceEEEEeecchhhhhhccCCceeeecccHHHHHHHHHHHHHH
Confidence 34444433 488999998887543221122112333455566666666544
No 87
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=90.22 E-value=9.7 Score=35.45 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHc-CCcEEEEeCCCchhh-HHHHhccCCCCeeccH------------------------HHHHHHHHHh-cCCCCc
Q 017159 160 AFLEQA-GARCIVMPCHISHAW-HGDVSEGCSIPFLHVG------------------------ECVAKELKEA-KLKPLE 212 (376)
Q Consensus 160 ~~L~~~-Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iv------------------------eat~~~~~~~-g~k~~~ 212 (376)
+.|... ++++|+-+..+.... .-.+-+..++|+|... ...++.+.+. |.
T Consensus 74 ~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~---- 149 (366)
T 3td9_A 74 ARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAYKNLGA---- 149 (366)
T ss_dssp HHHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHHHHHTSCC----
T ss_pred HHHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHHHHHhcCC----
Confidence 445444 599888776553322 3334445577776542 2344555443 44
Q ss_pred CCCCceEEEeec---chhh-chHHHHHHHHhcCCceee
Q 017159 213 AGSGVRIGVLAT---DATL-SAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 213 ~~~~~rVGlLaT---~~T~-~s~~Y~~~L~~~G~evv~ 246 (376)
+||+++.. .+.. ....|++.+++.|++++.
T Consensus 150 ----~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~ 183 (366)
T 3td9_A 150 ----KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKR 183 (366)
T ss_dssp ----CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ----cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 49999943 2221 224478888999988753
No 88
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=90.00 E-value=1.8 Score=40.41 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=48.7
Q ss_pred HHHH-HcCCcEEEEeCCCchhh-HHHHhccCCCCeecc------------------------HHHHHHHHHHhcCCCCcC
Q 017159 160 AFLE-QAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV------------------------GECVAKELKEAKLKPLEA 213 (376)
Q Consensus 160 ~~L~-~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I------------------------veat~~~~~~~g~k~~~~ 213 (376)
+.|. +.++++|+.+..+.... .-.+-+..++|+|.. ....++.+.+.|.+
T Consensus 65 ~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---- 140 (358)
T 3hut_A 65 RAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFT---- 140 (358)
T ss_dssp HHHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHHHTTCC----
T ss_pred HHHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHHHcCCC----
Confidence 4454 68899998776553322 223333457787763 23456666766654
Q ss_pred CCCceEEEeecchhh---chHHHHHHHHhcCCcee
Q 017159 214 GSGVRIGVLATDATL---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 214 ~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv 245 (376)
||++++..... ....|++.+++.|++++
T Consensus 141 ----~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 171 (358)
T 3hut_A 141 ----SVAVIGVTTDWGLSSAQAFRKAFELRGGAVV 171 (358)
T ss_dssp ----EEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ----EEEEEecCcHHHHHHHHHHHHHHHHcCCEEE
Confidence 99999754322 23347888999999875
No 89
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=89.88 E-value=2.4 Score=40.18 Aligned_cols=79 Identities=6% Similarity=0.015 Sum_probs=46.1
Q ss_pred HHHHHHc-CCcEEEEeCCCchh-hHHHHhccCCCCeecc-------------------------HHHHHHHHHHh-cCCC
Q 017159 159 RAFLEQA-GARCIVMPCHISHA-WHGDVSEGCSIPFLHV-------------------------GECVAKELKEA-KLKP 210 (376)
Q Consensus 159 ~~~L~~~-Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~I-------------------------veat~~~~~~~-g~k~ 210 (376)
++.|.+. ++++|+.+ .+... ..-.+-+..++|+|.. ....++.+.+. |.+
T Consensus 67 ~~~li~~~~V~~iig~-~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~- 144 (392)
T 3lkb_A 67 FEEAVDRFKIPVFLSY-ATGANLQLKPLIQELRIPTIPASMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGA- 144 (392)
T ss_dssp HHHHHHTTCCSCEEEC-CHHHHHHHHHHHHHHTCCEEESCCCGGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHhhcCcEEEEeC-CcHHHHHHHHHHHhCCceEEecccChhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCC-
Confidence 3445554 89988873 33222 1222333346776652 22345666664 554
Q ss_pred CcCCCCceEEEeecchhh---chHHHHHHHHhcCCceee
Q 017159 211 LEAGSGVRIGVLATDATL---SAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 211 ~~~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv~ 246 (376)
||+++..+... ....|++.+++.|++++.
T Consensus 145 -------~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~ 176 (392)
T 3lkb_A 145 -------KVALVVHPSPFGRAPVEDARKAARELGLQIVD 176 (392)
T ss_dssp -------EEEEEECSSHHHHTTHHHHHHHHHHHTCEEEE
T ss_pred -------EEEEEEeCCchhhhHHHHHHHHHHHcCCeEEE
Confidence 99999875432 233488889999998763
No 90
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=89.82 E-value=9.3 Score=35.81 Aligned_cols=160 Identities=12% Similarity=0.075 Sum_probs=83.7
Q ss_pred HHHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|.+.++|.|++..... ...++.+.+ .++|++-+ ...+++++.+.|++ |
T Consensus 119 ~~~l~~~~vdGiI~~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~r--------~ 189 (355)
T 3e3m_A 119 VETMLRRRPEAMVLSYDGHTEQTIRLLQR-ASIPIVEIWEKPAHPIGHTVGFSNERAAYDMTNALLARGFR--------K 189 (355)
T ss_dssp HHHHHHTCCSEEEEECSCCCHHHHHHHHH-CCSCEEEESSCCSSCSSEEEECCHHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHhCCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------e
Confidence 3456678999988765432 233555543 36776644 23456777777765 8
Q ss_pred EEEeecchh------hchHHHHHHHHhcCCcee----ecC-ccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHH
Q 017159 219 IGVLATDAT------LSAGFYQEKLQNQGFEVV----LPD-KATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQL 281 (376)
Q Consensus 219 VGlLaT~~T------~~s~~Y~~~L~~~G~evv----~p~-~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~ 281 (376)
||+++.+.. .+..-|.+.++++|+++. ... ....+. -...++. ++.+ .++ ........+++.
T Consensus 190 I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~a 268 (355)
T 3e3m_A 190 IVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIED-GVAAAELILQEYPDTDCIFCVSDMPAFGLLSR 268 (355)
T ss_dssp EEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHH-HHHHHHHHHHHCTTCCEEEESSHHHHHHHHHH
T ss_pred EEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHH-HHHHHHHHHcCCCCCcEEEECChHHHHHHHHH
Confidence 999986432 123338888999987642 111 111110 1111222 2221 111 011222233444
Q ss_pred HhhCC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 282 LLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 282 L~~~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
+.+.| -|.-|+|+.+.++..-. .+..-.+-=+...+++.+++.+...
T Consensus 269 l~~~G~~vP~disvigfD~~~~~~~~-~p~lttv~~~~~~~g~~A~~~l~~~ 319 (355)
T 3e3m_A 269 LKSIGVAVPEQVSVVGFGNFEVSRFA-SPEISTVRVDPIAIGRETGSLILRL 319 (355)
T ss_dssp HHHHTCCTTTTCEEECSSCCHHHHHS-SSCCBEEECCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCceEEEEECChHHHhcc-CCCceEEecCHHHHHHHHHHHHHHH
Confidence 44444 48889999988764211 1211233335667777777777654
No 91
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=89.81 E-value=7.5 Score=34.52 Aligned_cols=159 Identities=10% Similarity=0.060 Sum_probs=81.9
Q ss_pred HHHHHHcCCcEEEEeC-CCchhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPC-HISHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaC-NTAH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.+...++|.|++.. +.....++.+++ .++|++-+ ...+++++.+.|.+ |
T Consensus 52 ~~~l~~~~vdgii~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~ 122 (275)
T 3d8u_A 52 LSTFLESRPAGVVLFGSEHSQRTHQLLEA-SNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFK--------N 122 (275)
T ss_dssp HHHHHTSCCCCEEEESSCCCHHHHHHHHH-HTCCEEEESSSCSSSSSEEECBCHHHHHHHHHHHHHTTTCC--------C
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEEeeccCCCCCCEEEEChHHHHHHHHHHHHHCCCC--------e
Confidence 3456678999877654 333444666654 35665533 33455666666653 8
Q ss_pred EEEeecchh-----hchHHHHHHHHhcCCcee---e-cCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHHHh
Q 017159 219 IGVLATDAT-----LSAGFYQEKLQNQGFEVV---L-PDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQLLL 283 (376)
Q Consensus 219 VGlLaT~~T-----~~s~~Y~~~L~~~G~evv---~-p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~L~ 283 (376)
|++++.+.. .+..-|.+.++++|+++. + ......+. ....++. ++.+ ..+ ........+++.+.
T Consensus 123 i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 201 (275)
T 3d8u_A 123 VGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQL-GAEGLAKLLLRDSSLNALVCSHEEIAIGALFECH 201 (275)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHH-HHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhH-HHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHH
Confidence 999986532 122337888999887532 1 11111111 1112222 3322 111 11222334445555
Q ss_pred hCC----CCEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHhc
Q 017159 284 VRA----VNAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARSN 329 (376)
Q Consensus 284 ~~g----aDaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~~ 329 (376)
+.| -|.-|+|+...+... ...+ .+..| =+...+++.+++.+...
T Consensus 202 ~~g~~vP~di~vvg~d~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~~ 250 (275)
T 3d8u_A 202 RRVLKVPTDIAIICLEGSSMGE-HAYP-SLTSAEFDYERMGTKAAEKLLHA 250 (275)
T ss_dssp HTTCCTTTTCEEEESSCCHHHH-TSSS-CCEEEECCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCceEEEecCCchHhh-hcCC-CcceecCCHHHHHHHHHHHHHHH
Confidence 555 367888988877532 1122 23333 35566777777776553
No 92
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=89.80 E-value=2.4 Score=37.60 Aligned_cols=158 Identities=9% Similarity=0.027 Sum_probs=80.8
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-----------------HHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-----------------GECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-----------------veat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
.+.+.+.++|.|++....... .+.+++ .++|++-+ ...+++++.+.|.+ ||++
T Consensus 51 ~~~l~~~~vdgiI~~~~~~~~-~~~l~~-~~~pvV~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~I~~ 120 (255)
T 1byk_A 51 LGVLKRRNIDGVVLFGFTGIT-EEMLAH-WQSSLVLLARDAKGFASVCYDDEGAIKILMQRLYDQGHR--------NISY 120 (255)
T ss_dssp HHHHHTTTCCEEEEECCTTCC-TTTSGG-GSSSEEEESSCCSSCEEEEECHHHHHHHHHHHHHHTTCC--------CEEE
T ss_pred HHHHHhcCCCEEEEecCcccc-HHHHHh-cCCCEEEEccccCCCCEEEEccHHHHHHHHHHHHHcCCC--------eEEE
Confidence 345667899988776432111 123332 35676543 34567777777764 8999
Q ss_pred eecc--h--hh--chHHHHHHHHhcCCceeec-CccccccchHHHHHHHhcCChH----HHHHHHHHHHHHHhhCCC-CE
Q 017159 222 LATD--A--TL--SAGFYQEKLQNQGFEVVLP-DKATMEHVIIPTIEALNHRDME----GARNLLRIGIQLLLVRAV-NA 289 (376)
Q Consensus 222 LaT~--~--T~--~s~~Y~~~L~~~G~evv~p-~~~~q~~~l~~~ie~lk~G~~~----~a~~~l~~~i~~L~~~ga-Da 289 (376)
++.+ . +. +..-|.+.++++|+++... .....+. -...++.+-....+ ........+++.+.+.|. |.
T Consensus 121 i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ai~~~~d~~A~g~~~al~~~g~~di 199 (255)
T 1byk_A 121 LGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQ-GYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTL 199 (255)
T ss_dssp ECCCTTSTTTTHHHHHHHHHHHHHTTCCCEEECCCSCHHH-HHHHSGGGCCTTCCEEEESSHHHHHHHHHHHHHTTCCSC
T ss_pred EecCCCCcccHHHHHHHHHHHHHHcCCCcceeecCCccch-HHHHHHHHhcCCCCEEEEeChHHHHHHHHHHHHcCCCcE
Confidence 9854 2 11 2233888899998764321 1111110 11111111111111 012233344555655663 88
Q ss_pred EEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHhc
Q 017159 290 VIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARSN 329 (376)
Q Consensus 290 VILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~~ 329 (376)
-|+|+...+... ...+ .+..|+ +...+++.+++.+...
T Consensus 200 ~vig~d~~~~~~-~~~p-~lttv~~~~~~~g~~a~~~l~~~ 238 (255)
T 1byk_A 200 QLASVGNTPLMK-FLHP-EIVTVDPGYAEAGRQAACQLIAQ 238 (255)
T ss_dssp EEEEECCCHHHH-HHCT-TSEEEBCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCchhhh-ccCC-CcceEecCHHHHHHHHHHHHHHH
Confidence 888998877541 1112 234443 4556777777766543
No 93
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=89.79 E-value=1.9 Score=40.88 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=61.3
Q ss_pred HHHHH-cCCcEEEEeCCCchhh-HHHHhccCCCCeecc--------------------------HHHHHHHHHHhcCCCC
Q 017159 160 AFLEQ-AGARCIVMPCHISHAW-HGDVSEGCSIPFLHV--------------------------GECVAKELKEAKLKPL 211 (376)
Q Consensus 160 ~~L~~-~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I--------------------------veat~~~~~~~g~k~~ 211 (376)
+.|.. .++++|+-+..+.... .-.+.+..++|+|.. ..+.++.+...|.
T Consensus 66 ~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~--- 142 (387)
T 3i45_A 66 QELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPI--- 142 (387)
T ss_dssp HHHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSC---
T ss_pred HHHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCC---
Confidence 44444 5999988876654332 333444557887763 1233444444333
Q ss_pred cCCCCceEEEeecchhh---chHHHHHHHHhc--CCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCC
Q 017159 212 EAGSGVRIGVLATDATL---SAGFYQEKLQNQ--GFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRA 286 (376)
Q Consensus 212 ~~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~--G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~g 286 (376)
+||+++..+... ....|++.+++. |++++....-. .+.. .+...++.+.+.+
T Consensus 143 -----~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~-------------~~~~-----d~~~~~~~i~~~~ 199 (387)
T 3i45_A 143 -----TRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPA-------------LYKL-----DAGPTVQALQQAE 199 (387)
T ss_dssp -----CEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCC-------------TTCC-----CHHHHHHHHHHTC
T ss_pred -----CeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCC-------------CCCc-----CHHHHHHHHHhCC
Confidence 599999865432 233477888888 77765321100 0111 1222334455568
Q ss_pred CCEEEECCCcc
Q 017159 287 VNAVIIGSDEM 297 (376)
Q Consensus 287 aDaVILGCTEl 297 (376)
+|+|++.|..-
T Consensus 200 ~d~v~~~~~~~ 210 (387)
T 3i45_A 200 PEGLFNVLFGA 210 (387)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEcCccH
Confidence 88888877543
No 94
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=89.74 E-value=0.45 Score=44.77 Aligned_cols=44 Identities=27% Similarity=0.466 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 152 SQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 152 ~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
.+.+.+.++.++++||++|++.|-.. ....++.+.+++|+++|.
T Consensus 160 a~~~i~rA~a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igIG 203 (264)
T 1m3u_A 160 GDQLLSDALALEAAGAQLLVLECVPV-ELAKRITEALAIPVIGIG 203 (264)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCCH-HHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCcEEEEecCCH-HHHHHHHHhCCCCEEEeC
Confidence 45567778889999999999999864 568899999999999974
No 95
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=89.72 E-value=2.4 Score=37.93 Aligned_cols=155 Identities=11% Similarity=0.037 Sum_probs=74.8
Q ss_pred HHHHHcCCcEEEEeCCCch-hhHHHHhccCCCCeecc-----------------HHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 160 AFLEQAGARCIVMPCHISH-AWHGDVSEGCSIPFLHV-----------------GECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH-~~~d~L~~~~~vPvl~I-----------------veat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
+.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+.|. +||++
T Consensus 49 ~~l~~~~vdgiI~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~--------~~i~~ 119 (276)
T 2h0a_A 49 NTTLAYLTDGLILASYDLTERFEEGRLP-TERPVVLVDAQNPRYDSVYLDNRLGGRLAGAYLARFPG--------PIFAI 119 (276)
T ss_dssp -----CCCSEEEEESCCCC------CCS-CSSCEEEESSCCTTSEEEEECSHHHHHHHHHHHTTSSS--------CEEEE
T ss_pred HHHHhCCCCEEEEecCCCCHHHHHHHhh-cCCCEEEEeccCCCCCEEEEccHHHHHHHHHHHHHcCC--------CeEEE
Confidence 3455689999887654333 34555543 46887643 2334555555554 49999
Q ss_pred eecch-h---------hchHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHH
Q 017159 222 LATDA-T---------LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQL 281 (376)
Q Consensus 222 LaT~~-T---------~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~ 281 (376)
++.+. . .+..-|.+.++++|+++. .......+. -...++. ++.+ ..+ ........+++.
T Consensus 120 i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 198 (276)
T 2h0a_A 120 AVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEG-GRLALRHFLEKASPPLNVFAGADQVALGVLEE 198 (276)
T ss_dssp EECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHH-HHHHHHHHHTTCCSSEEEECSSHHHHHHHHHH
T ss_pred EecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHH-HHHHHHHHHhCCCCCCEEEECCcHHHHHHHHH
Confidence 98653 2 122337888999987642 111111111 1112223 2322 111 112233344555
Q ss_pred HhhCC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 282 LLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 282 L~~~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
+.+.| -|.-|.|+...+... ... +..|+ +...+++.+++.+..
T Consensus 199 l~~~g~~vP~di~vvg~d~~~~~~-~~~---lttv~~~~~~~g~~a~~~l~~ 246 (276)
T 2h0a_A 199 AVRLGLTPGRDVRVLGFDGHPFAE-EAG---LSTIAQPVEAMGARAAQLLLE 246 (276)
T ss_dssp HHTTSCTTTTSEEEEEESCCTHHH-HHT---CEEEECCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCeEEEEeCCCchhh-hcc---eeEecCCHHHHHHHHHHHHHH
Confidence 65555 467888887776431 111 23343 456666666666654
No 96
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=89.67 E-value=2.8 Score=38.25 Aligned_cols=160 Identities=13% Similarity=0.187 Sum_probs=84.1
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
++.|.+.++|.|++........++.++ ..++|++-+ ...+++++.+.|.+ |
T Consensus 63 ~~~l~~~~vdGiIi~~~~~~~~~~~~~-~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 133 (301)
T 3miz_A 63 WKMFQSHRIDGVLYVTMYRRIVDPESG-DVSIPTVMINCRPQTRELLPSIEPDDYQGARDLTRYLLERGHR--------R 133 (301)
T ss_dssp HHHHHHTTCSEEEEEEEEEEECCCCCT-TCCCCEEEEEEECSSTTSSCEEEECHHHHHHHHHHHHHTTTCC--------S
T ss_pred HHHHHhCCCCEEEEecCCccHHHHHHH-hCCCCEEEECCCCCCCCCCCEEeeChHHHHHHHHHHHHHcCCC--------e
Confidence 355677899998876543332222222 235665532 33456777777664 8
Q ss_pred EEEeecchhh-----chHHHHHHHHhcCCce----eecC---ccccccch-HHHHHH-HhcC-ChHH----HHHHHHHHH
Q 017159 219 IGVLATDATL-----SAGFYQEKLQNQGFEV----VLPD---KATMEHVI-IPTIEA-LNHR-DMEG----ARNLLRIGI 279 (376)
Q Consensus 219 VGlLaT~~T~-----~s~~Y~~~L~~~G~ev----v~p~---~~~q~~~l-~~~ie~-lk~G-~~~~----a~~~l~~~i 279 (376)
||+++.+... +..-|.+.++++|+++ +... ....+... ...++. ++.+ ..+. .......++
T Consensus 134 I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~ 213 (301)
T 3miz_A 134 IGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEMAIQIY 213 (301)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEESSHHHHHHHH
T ss_pred EEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEECCHHHHHHHH
Confidence 9999864322 2233888899988754 2222 11111101 012333 3322 2111 122334555
Q ss_pred HHHhhCCC----CEEEECCCccc-cccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 280 QLLLVRAV----NAVIIGSDEMQ-GVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 280 ~~L~~~ga----DaVILGCTElp-ll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
+.+.+.|. |.-|+|+...+ ... ...+....+-=+...+++.+++.+..
T Consensus 214 ~al~~~g~~vP~di~vig~D~~~~~~~-~~~p~lttv~~~~~~~g~~av~~l~~ 266 (301)
T 3miz_A 214 IAAMALGLRIPQDVSIVGFDDFRTVTM-ALKPELTTAALPYYDLGREGAKWLND 266 (301)
T ss_dssp HHHHTTTCCHHHHCEEECSBCCHHHHT-TSSSCCBEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCeeEEEeCCcHHHhc-cCCCCeeEEecCHHHHHHHHHHHHHH
Confidence 66666664 67899999888 542 22221123333456667777766655
No 97
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=89.56 E-value=0.5 Score=44.36 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHh
Q 017159 152 SQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEA 206 (376)
Q Consensus 152 ~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~ 206 (376)
.+.+.+.++.|.+.|+|.||+.|.-...+.+++++..++|+++-.+.+++++.+.
T Consensus 195 ~~~l~~~l~~l~~~g~d~vILGCTh~pll~~~l~~~~~v~viDs~~~~A~~~~~~ 249 (268)
T 3s81_A 195 QALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRW 249 (268)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECSTTHHHHHTTTGGGSSSCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHhcCCCCeEEccHHHHHHHHHHH
Confidence 4556677778888899999999975554566766777899999999999988775
No 98
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=89.26 E-value=0.4 Score=45.70 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH------HHHHHHHHhcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE------CVAKELKEAKLK 209 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive------at~~~~~~~g~k 209 (376)
+.+.++.++++|||+|++.|-..-..+.++.+.+++|++ |++ .+.+++.+.|++
T Consensus 170 ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~~P~i-i~~~g~~~~~~~~eL~~lGv~ 229 (287)
T 3b8i_A 170 VIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLM-LVTYGNPQLRDDARLARLGVR 229 (287)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSHHHHHHHHTTCCSCEE-EECTTCGGGCCHHHHHHTTEE
T ss_pred HHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhCCCCEE-EeCCCCCCCCCHHHHHHcCCc
Confidence 444556788999999999997543568899999999999 754 257888888873
No 99
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=89.25 E-value=11 Score=33.63 Aligned_cols=160 Identities=8% Similarity=-0.012 Sum_probs=78.7
Q ss_pred HHHHHHcCCcEEEEeCCCchh---hHHHHhccCCCCeecc--------------------HHHHHHHHHHh-c-CCCCcC
Q 017159 159 RAFLEQAGARCIVMPCHISHA---WHGDVSEGCSIPFLHV--------------------GECVAKELKEA-K-LKPLEA 213 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~---~~d~L~~~~~vPvl~I--------------------veat~~~~~~~-g-~k~~~~ 213 (376)
++.|.+.++|.|++....... .++.+.+ .++|++-+ ...+++++.+. | .
T Consensus 58 ~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~L~~~~G~~----- 131 (289)
T 3brs_A 58 IEEAIKRKPDVILLAAADYEKTYDAAKEIKD-AGIKLIVIDSGMKQDIADITVATDNIQAGIRIGAVTKNLVRKS----- 131 (289)
T ss_dssp HHHHHHTCCSEEEECCSCTTTTHHHHTTTGG-GTCEEEEESSCCSSCCCSEEEECCHHHHHHHHHHHHHHHTSSS-----
T ss_pred HHHHHHhCCCEEEEeCCChHHhHHHHHHHHH-CCCcEEEECCCCCCCcceEEEeeChHHHHHHHHHHHHHHcCCC-----
Confidence 345667899998886544332 2333332 35665422 33456777775 4 4
Q ss_pred CCCceEEEeecchh-----hchHHHHHHHHhcCCcee--ecCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHH
Q 017159 214 GSGVRIGVLATDAT-----LSAGFYQEKLQNQGFEVV--LPDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQ 280 (376)
Q Consensus 214 ~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~evv--~p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~ 280 (376)
+||++++.+.. .+..-|.+.++++|..+. .......+. ....++. +..+ ..+ ........+++
T Consensus 132 ---~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 207 (289)
T 3brs_A 132 ---GKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDK-AYDGTVELLTKYPDISVMVGLNQYSATGAAR 207 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEECTTCHHH-HHHHHHHHHHHCTTEEEEEESSHHHHHHHHH
T ss_pred ---ceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEeeecCCCCHHH-HHHHHHHHHHhCCCceEEEECCCcchHHHHH
Confidence 49999976421 122337788888886532 111111111 1112222 2222 111 01222333445
Q ss_pred HHhhCCC--CEEEECCCccccccCCCCCCCC-eeee-hHHHHHHHHHHHHHh
Q 017159 281 LLLVRAV--NAVIIGSDEMQGVLPKDDPLLK-KCID-PMDALARSTVTWARS 328 (376)
Q Consensus 281 ~L~~~ga--DaVILGCTElpll~~~~~~~~v-pvID-p~~~lA~a~v~~a~~ 328 (376)
.+.+.|. |.-|+|+...+.......+..+ ..|+ +...+++.+++.+..
T Consensus 208 al~~~G~~~di~vvg~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l~~ 259 (289)
T 3brs_A 208 AIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKALK 259 (289)
T ss_dssp HHHHTTCTTTSEEEEEESCSCC-----CCSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEECCCHHHHHHHHCCceEEEEecChHHHHHHHHHHHHH
Confidence 5555554 6888899888863322221123 3343 455666666666554
No 100
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=89.25 E-value=2 Score=40.96 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=45.5
Q ss_pred HHHH-HcCCcEEEEeCCCchh-hHHHHhccCCCCeecc----------------------HHHHHHHHHHh-cCCCCcCC
Q 017159 160 AFLE-QAGARCIVMPCHISHA-WHGDVSEGCSIPFLHV----------------------GECVAKELKEA-KLKPLEAG 214 (376)
Q Consensus 160 ~~L~-~~Gad~IVIaCNTAH~-~~d~L~~~~~vPvl~I----------------------veat~~~~~~~-g~k~~~~~ 214 (376)
+.|. +.++++|+.+| +... ..-.+-+..++|+|.. ....++.+.+. |.+
T Consensus 69 ~~li~~~~V~~iiG~~-s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~----- 142 (391)
T 3eaf_A 69 REFRDRYGVIAIIGWG-TADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYSTQACSGLAFLASEFGQG----- 142 (391)
T ss_dssp HHHHHTTCCSEEEECC-HHHHHHHHHHHHHHTCEEEESCCCGGGTTSTTEECSSCCHHHHHHHHHHHHHHHHCSE-----
T ss_pred HHHHhhcCcEEEEEcC-cHHHHHHHHHHhhcCCeEEecccchhhcCCCcEEEeCCCHHHHHHHHHHHHHHhcCCC-----
Confidence 4454 67899988743 3222 1222333446777642 23345666664 654
Q ss_pred CCceEEEeec-chh---hchHHHHHHHHhcCCceee
Q 017159 215 SGVRIGVLAT-DAT---LSAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 215 ~~~rVGlLaT-~~T---~~s~~Y~~~L~~~G~evv~ 246 (376)
||+++.. ... -....|++.++++|++++.
T Consensus 143 ---~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~ 175 (391)
T 3eaf_A 143 ---KLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVG 175 (391)
T ss_dssp ---EEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEE
T ss_pred ---EEEEEEecCChhHHHHHHHHHHHHHHcCCceee
Confidence 9999987 322 2234577888888987653
No 101
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=89.20 E-value=0.46 Score=45.02 Aligned_cols=43 Identities=28% Similarity=0.467 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 153 QNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 153 ~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
+.+.+.++.++++||++|++.|-.. ....++.+.+++|+++|.
T Consensus 161 ~~~i~rA~a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igIG 203 (275)
T 1o66_A 161 QALLNDAKAHDDAGAAVVLMECVLA-ELAKKVTETVSCPTIGIG 203 (275)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCCH-HHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCH-HHHHHHHHhCCCCEEEEC
Confidence 4466667789999999999999874 568899999999999974
No 102
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=88.85 E-value=5.3 Score=36.47 Aligned_cols=157 Identities=8% Similarity=-0.005 Sum_probs=82.0
Q ss_pred HHHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 159 RAFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
.+.+.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|.+ |
T Consensus 76 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~-~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~--------~ 146 (305)
T 3huu_A 76 KTMIQSKSVDGFILLYSLKDDPIEHLLNE-FKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHR--------H 146 (305)
T ss_dssp HHHHHTTCCSEEEESSCBTTCHHHHHHHH-TTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHHHHTTCC--------S
T ss_pred HHHHHhCCCCEEEEeCCcCCcHHHHHHHH-cCCCEEEECCCCcccCCcEEEeCHHHHHHHHHHHHHHCCCC--------e
Confidence 455777899998776433 3344555543 35665533 34467778877764 8
Q ss_pred EEEeecchhh-----chHHHHHHHHhcCCceee--cCccccccchHHHHHHH--hcC-ChH----HHHHHHHHHHHHHhh
Q 017159 219 IGVLATDATL-----SAGFYQEKLQNQGFEVVL--PDKATMEHVIIPTIEAL--NHR-DME----GARNLLRIGIQLLLV 284 (376)
Q Consensus 219 VGlLaT~~T~-----~s~~Y~~~L~~~G~evv~--p~~~~q~~~l~~~ie~l--k~G-~~~----~a~~~l~~~i~~L~~ 284 (376)
|++++.+... +..-|.+.++++|+++.. .... .. -...++.+ +.+ .++ ........+++.+.+
T Consensus 147 I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~ 223 (305)
T 3huu_A 147 ILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSM--ND-LRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYE 223 (305)
T ss_dssp EEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEECSH--HH-HHHHC--------CCCSEEEESSHHHHHHHHHHHHH
T ss_pred EEEEcCCcccchhHHHHHHHHHHHHHcCCCcccEEecCc--HH-HHHHHHHhhhcCCCCCCEEEECChHHHHHHHHHHHH
Confidence 9999764321 233388889999877542 1111 00 11111222 211 111 012222344455555
Q ss_pred CC----CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 285 RA----VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 285 ~g----aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
.| -|.-|+|+...+..... .+..-.+-=+...+++.+++.+..
T Consensus 224 ~g~~vP~di~vig~D~~~~~~~~-~p~lttv~~~~~~~g~~av~~l~~ 270 (305)
T 3huu_A 224 YQLRIPEDIQTATFNTSFLTENA-TPSQTSVNINPDVLGFTAGNTIID 270 (305)
T ss_dssp TTCCTTTTCEEEEESCSHHHHTS-SSCCEEEECCHHHHHHHHHHHHHH
T ss_pred cCCCCCcceEEEEECCcchhhhc-CCcceEEecCHHHHHHHHHHHHHH
Confidence 55 47889999888754221 121112333456667777776655
No 103
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=88.84 E-value=15 Score=34.27 Aligned_cols=158 Identities=10% Similarity=0.059 Sum_probs=80.1
Q ss_pred HHHHHcCCcEEEEe-CCCchhh-HHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMP-CHISHAW-HGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIa-CNTAH~~-~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.|++. +...... ...+. ..++|++-+ ...+++++.+.|++ +|
T Consensus 112 ~~l~~~~vdGiIi~~~~~~~~~~~~~~~-~~~iPvV~i~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~I 182 (349)
T 1jye_A 112 HNLLAQRVSGLIINYPLDDQDAIAVEAA-CTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQ--------QI 182 (349)
T ss_dssp HHHHTTTCSCEEEESCCCHHHHHHHHHH-TTTSCEEESSSCTTSSSCEEEECHHHHHHHHHHHHHHHTCC--------SE
T ss_pred HHHHHCCCCEEEEecCCCChhHHHHHHh-hCCCCEEEEcccCCCCCCEEEEchHHHHHHHHHHHHHCCCC--------EE
Confidence 44667889988885 3322222 22222 235665533 23356777777764 89
Q ss_pred EEeecchh---h--chHHHHHHHHhcCCceee--cCccccccchHHHHHH-HhcCC-hHH----HHHHHHHHHHHHhhCC
Q 017159 220 GVLATDAT---L--SAGFYQEKLQNQGFEVVL--PDKATMEHVIIPTIEA-LNHRD-MEG----ARNLLRIGIQLLLVRA 286 (376)
Q Consensus 220 GlLaT~~T---~--~s~~Y~~~L~~~G~evv~--p~~~~q~~~l~~~ie~-lk~G~-~~~----a~~~l~~~i~~L~~~g 286 (376)
|+++.+.. . +..-|.+.++++|+++.. ......+. -...++. +..+. .+. .......+++.+.+.|
T Consensus 183 ~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G 261 (349)
T 1jye_A 183 ALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMS-GFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESG 261 (349)
T ss_dssp EEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECCSSHHH-HHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHHcCCCccccccCCCChHH-HHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcC
Confidence 99986532 1 122388889999976432 11111110 0111222 23221 111 1223334455566665
Q ss_pred C----CEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 287 V----NAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 287 a----DaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
. |.-|.|+...+..... .+..-.+-=+...+++.+++.+..
T Consensus 262 ~~vP~disvvGfD~~~~~~~~-~p~lttv~q~~~~~g~~Av~~L~~ 306 (349)
T 1jye_A 262 LRVGADISVVGYDDTEDSSCY-IPPLTTIKQDFRLLGQTSVDRLLQ 306 (349)
T ss_dssp CCBTTTBEEECSBCCGGGGGS-SSCCBEEECCHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCcHHHHhc-CCceeEEeCCHHHHHHHHHHHHHH
Confidence 3 7889999988864321 121122333556666666666544
No 104
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=88.71 E-value=0.87 Score=43.69 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCee-ccHH------HHHHHHHHhcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFL-HVGE------CVAKELKEAKLK 209 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl-~Ive------at~~~~~~~g~k 209 (376)
..+.++.++++|||+|++.|-..-..+.++.+.+++|++ +|++ .+.+++.+.|++
T Consensus 177 ai~Ra~ay~eAGAD~i~~e~~~~~~~~~~i~~~~~~P~~~n~~~~g~tp~~~~~eL~~lGv~ 238 (305)
T 3ih1_A 177 AIERANAYVKAGADAIFPEALQSEEEFRLFNSKVNAPLLANMTEFGKTPYYSAEEFANMGFQ 238 (305)
T ss_dssp HHHHHHHHHHHTCSEEEETTCCSHHHHHHHHHHSCSCBEEECCTTSSSCCCCHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHcCCCEEEeecCCCCCCCCCHHHHHHcCCC
Confidence 344456688899999999998754558888889999987 5543 246888998874
No 105
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=88.51 E-value=0.56 Score=45.31 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCee-ccHH------HHHHHHHHhcCC
Q 017159 153 QNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFL-HVGE------CVAKELKEAKLK 209 (376)
Q Consensus 153 ~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl-~Ive------at~~~~~~~g~k 209 (376)
+.+.+.++.++++|||+|++.|-..-..+.++.+.+++|++ ++.+ .+.+++.+.|++
T Consensus 189 ~~ai~Ra~Ay~eAGAd~i~~e~~~~~e~~~~i~~~l~~P~lan~~~~g~~~~~~~~eL~~lGv~ 252 (318)
T 1zlp_A 189 EEGIRRANLYKEAGADATFVEAPANVDELKEVSAKTKGLRIANMIEGGKTPLHTPEEFKEMGFH 252 (318)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHHSCSEEEEEECTTSSSCCCCHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCe
Confidence 33555567789999999999997643558888899999985 6653 246788888874
No 106
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=88.45 E-value=0.53 Score=44.71 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH
Q 017159 153 QNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 153 ~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
+.+.+.++.++++||++|++.|-.. ....++.+.+++|+++|.
T Consensus 179 ~~~i~rA~a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igIG 221 (281)
T 1oy0_A 179 EQTIADAIAVAEAGAFAVVMEMVPA-ELATQITGKLTIPTVGIG 221 (281)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCH-HHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCH-HHHHHHHHhCCCCEEEeC
Confidence 5566777889999999999999874 568899999999999974
No 107
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=88.24 E-value=1.2 Score=42.82 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=61.7
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.|+.|-++|-.-..+.++.+||.......+...++++|.-..+- .... ..++.++ .++.
T Consensus 128 ~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa---~~~~--------------gldeAi~----Ra~a 186 (307)
T 3lye_A 128 TKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDA---LQSL--------------GYEECIE----RLRA 186 (307)
T ss_dssp CC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECC---HHHH--------------CHHHHHH----HHHH
T ss_pred CcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechh---hhcc--------------CHHHHHH----HHHH
Confidence 57788888877778889999998877543322356766543321 0100 0133333 3345
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhccCC-CCee-ccHH------HHHHHHHHhcCC
Q 017159 162 LEQAGARCIVMPCHISHAWHGDVSEGCS-IPFL-HVGE------CVAKELKEAKLK 209 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~~d~L~~~~~-vPvl-~Ive------at~~~~~~~g~k 209 (376)
..++|||+|.++|-+.-.-+.++.+.++ +|++ ++++ .+.+++.+.|++
T Consensus 187 y~eAGAD~ifi~~~~~~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t~~eL~~lGv~ 242 (307)
T 3lye_A 187 ARDEGADVGLLEGFRSKEQAAAAVAALAPWPLLLNSVENGHSPLITVEEAKAMGFR 242 (307)
T ss_dssp HHHTTCSEEEECCCSCHHHHHHHHHHHTTSCBEEEEETTSSSCCCCHHHHHHHTCS
T ss_pred HHHCCCCEEEecCCCCHHHHHHHHHHccCCceeEEeecCCCCCCCCHHHHHHcCCe
Confidence 6789999999999865344677777664 8874 5554 246789999874
No 108
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=88.13 E-value=1.7 Score=40.85 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=47.7
Q ss_pred HHHHH-cCCcEEEEeCCCchhh-HHHHhccCCCCeecc--------------------------HHHHHHHHHHhcCCCC
Q 017159 160 AFLEQ-AGARCIVMPCHISHAW-HGDVSEGCSIPFLHV--------------------------GECVAKELKEAKLKPL 211 (376)
Q Consensus 160 ~~L~~-~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I--------------------------veat~~~~~~~g~k~~ 211 (376)
+.|.+ .++++|+.+..+.... .-.+-+..++|+|.. ....++.+.+.|.+
T Consensus 75 ~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-- 152 (375)
T 4evq_A 75 TKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLK-- 152 (375)
T ss_dssp HCCCCCSCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHhcCCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCc--
Confidence 34444 4888888776543322 223333446777621 23456677776654
Q ss_pred cCCCCceEEEeecchhhc---hHHHHHHHHhcCCcee
Q 017159 212 EAGSGVRIGVLATDATLS---AGFYQEKLQNQGFEVV 245 (376)
Q Consensus 212 ~~~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv 245 (376)
||++++.+.... ...|++.++++|++++
T Consensus 153 ------~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~ 183 (375)
T 4evq_A 153 ------KAVTVTWKYAAGEEMVSGFKKSFTAGKGEVV 183 (375)
T ss_dssp ------EEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ------EEEEEecCchHHHHHHHHHHHHHHHcCCeEE
Confidence 999998654322 3447888999999875
No 109
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=88.03 E-value=0.64 Score=44.29 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=59.9
Q ss_pred CCeEEEEc--CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 82 ANTIGIIG--GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 82 ~k~IGIIG--GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
.|+.|-+| |-.-....++.++|.......+. .++++.-..+ ..-.....++ +.+.+
T Consensus 115 ~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~--~~~~i~aRtd----------------a~~a~~g~~~----ai~Ra 172 (290)
T 2hjp_A 115 PKDTSLRTDGRQELVRIEEFQGKIAAATAARAD--RDFVVIARVE----------------ALIAGLGQQE----AVRRG 172 (290)
T ss_dssp SCCC-------CCBCCHHHHHHHHHHHHHHCSS--TTSEEEEEEC----------------TTTTTCCHHH----HHHHH
T ss_pred CccccccccCCCcccCHHHHHHHHHHHHHhccc--CCcEEEEeeh----------------HhhccccHHH----HHHHH
Confidence 46677777 44455566788888887764432 4454432110 0000000133 34445
Q ss_pred HHHHHcCCcEEEEeC-CCchhhHHHHhccCC--CCee-ccH---HHHHHHHHHhc-C
Q 017159 160 AFLEQAGARCIVMPC-HISHAWHGDVSEGCS--IPFL-HVG---ECVAKELKEAK-L 208 (376)
Q Consensus 160 ~~L~~~Gad~IVIaC-NTAH~~~d~L~~~~~--vPvl-~Iv---eat~~~~~~~g-~ 208 (376)
+.++++|||+|++.| -..-..+.++.+.++ +|++ ++. ..+.+++.+.| +
T Consensus 173 ~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v 229 (290)
T 2hjp_A 173 QAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKV 229 (290)
T ss_dssp HHHHHTTCSEEEECCCCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTE
T ss_pred HHHHHcCCcEEEeCCCCCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCe
Confidence 668899999999999 653345788888888 9977 332 23567788777 6
No 110
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=87.92 E-value=8.5 Score=35.60 Aligned_cols=158 Identities=14% Similarity=0.140 Sum_probs=83.2
Q ss_pred HHHHHcCCcEEEEeCCC-chhhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCceE
Q 017159 160 AFLEQAGARCIVMPCHI-SHAWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNT-AH~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~rV 219 (376)
+.|.+.++|.|++.... ....++.+++ .++|++-+ ...+++++.+.|++ ||
T Consensus 110 ~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I 180 (332)
T 2hsg_A 110 NNMLGKQVDGIIFMSGNVTEEHVEELKK-SPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHK--------NI 180 (332)
T ss_dssp HHTSCCSSCCEEECCSSCCHHHHHHHTT-SSSCEEEESCCCSCTTSCEEEECHHHHHHHHHHHHHTTTCS--------CE
T ss_pred HHHHhCCCcEEEEecCCCCHHHHHHHHh-CCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHCCCC--------EE
Confidence 44556789988775533 2334566643 35665532 23456667666654 89
Q ss_pred EEeecch-h---h--chHHHHHHHHhcCCcee----ecCccccccchHHHHHH-HhcC-ChHH----HHHHHHHHHHHHh
Q 017159 220 GVLATDA-T---L--SAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEA-LNHR-DMEG----ARNLLRIGIQLLL 283 (376)
Q Consensus 220 GlLaT~~-T---~--~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~-lk~G-~~~~----a~~~l~~~i~~L~ 283 (376)
|+++.+. . . +..-|.+.++++|+++. .......+. -...++. +..+ .++. .......+++.+.
T Consensus 181 ~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~ 259 (332)
T 2hsg_A 181 AFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDS-GIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQ 259 (332)
T ss_dssp EEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHH-HHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHH
T ss_pred EEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHH-HHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHH
Confidence 9998653 1 1 22338888999987642 221111111 1112222 2222 1111 1223334555666
Q ss_pred hCCC----CEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHhc
Q 017159 284 VRAV----NAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARSN 329 (376)
Q Consensus 284 ~~ga----DaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~~ 329 (376)
+.|. |.-|+|+...+.. ....+. +..| =+...+++.+++.+...
T Consensus 260 ~~G~~vP~disvvg~D~~~~~-~~~~p~-lttv~~~~~~~g~~a~~~l~~~ 308 (332)
T 2hsg_A 260 DRGLNVPNDLEIIGFDNTRLS-TMVRPQ-LTSVVQPMYDIGAVAMRLLTKY 308 (332)
T ss_dssp HTTCCHHHHCEEEEESCCGGG-GSSSSC-CEEEECCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCeEEEEECChHHH-hccCCc-eeEEECCHHHHHHHHHHHHHHH
Confidence 6664 5778898888753 222222 3333 35666777777776553
No 111
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=87.87 E-value=1.4 Score=42.08 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=66.0
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.|+.|-++|-.-..+.++.+||.......+ ..++++.-..+- .. . +.+-+ ..+.++.
T Consensus 123 ~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~--~~~~~I~ARTDa---~~--------------~---~glde-ai~Ra~a 179 (298)
T 3eoo_A 123 QKRCGHRPGKECVPAGEMVDRIKAAVDART--DETFVIMARTDA---AA--------------A---EGIDA-AIERAIA 179 (298)
T ss_dssp CCCTTCCCCCCBCCHHHHHHHHHHHHHHCS--STTSEEEEEECT---HH--------------H---HHHHH-HHHHHHH
T ss_pred CcccCCCCCCeecCHHHHHHHHHHHHHhcc--CCCeEEEEeehh---hh--------------h---cCHHH-HHHHHHh
Confidence 355666666666778889999987665332 346665443211 00 0 11222 2333445
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhccCCCCee-ccHHH------HHHHHHHhcCC
Q 017159 162 LEQAGARCIVMPCHISHAWHGDVSEGCSIPFL-HVGEC------VAKELKEAKLK 209 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl-~Ivea------t~~~~~~~g~k 209 (376)
..++|||+|.++|-+.---+.++.+.+++|++ ++++- +.+++.+.|++
T Consensus 180 y~~AGAD~if~~~~~~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~~~~eL~~lGv~ 234 (298)
T 3eoo_A 180 YVEAGADMIFPEAMKTLDDYRRFKEAVKVPILANLTEFGSTPLFTLDELKGANVD 234 (298)
T ss_dssp HHHTTCSEEEECCCCSHHHHHHHHHHHCSCBEEECCTTSSSCCCCHHHHHHTTCC
T ss_pred hHhcCCCEEEeCCCCCHHHHHHHHHHcCCCeEEEeccCCCCCCCCHHHHHHcCCe
Confidence 67899999999998643347778888889974 66542 46788998874
No 112
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=87.38 E-value=4.6 Score=36.37 Aligned_cols=157 Identities=10% Similarity=0.121 Sum_probs=81.4
Q ss_pred HHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc-----------------HHHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 162 LEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV-----------------GECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I-----------------veat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
+.+.++|.|++........ +.++. ..++|++-+ ...+++++.+.|.+ +|++++
T Consensus 64 l~~~~vdgiIi~~~~~~~~~~~~~~-~~~iPvV~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~i~~i~ 134 (289)
T 3g85_A 64 SKENSFDAAIIANISNYDLEYLNKA-SLTLPIILFNRLSNKYSSVNVDNYKMGEKASLLFAKKRYK--------SAAAIL 134 (289)
T ss_dssp STTTCCSEEEESSCCHHHHHHHHHC-CCSSCEEEESCCCSSSEEEEECHHHHHHHHHHHHHHTTCC--------BCEEEE
T ss_pred HhccCCCEEEEecCCcccHHHHHhc-cCCCCEEEECCCCCCCCEEEeCHHHHHHHHHHHHHHcCCC--------EEEEEe
Confidence 5567888888776543321 22222 346776643 34567778877764 899997
Q ss_pred cchh-----hchHHHHHHHHhcCCcee----ecCccccccchHHHHHHH-hcC-ChHH----HHHHHHHHHHHHhhCC--
Q 017159 224 TDAT-----LSAGFYQEKLQNQGFEVV----LPDKATMEHVIIPTIEAL-NHR-DMEG----ARNLLRIGIQLLLVRA-- 286 (376)
Q Consensus 224 T~~T-----~~s~~Y~~~L~~~G~evv----~p~~~~q~~~l~~~ie~l-k~G-~~~~----a~~~l~~~i~~L~~~g-- 286 (376)
.+.. .+..-|.+.++++|+++. .......+. ....++.+ +.+ ..+. .......+++.+.+.|
T Consensus 135 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 135 TESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHG-GVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHH-HHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHH-HHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCC
Confidence 6432 123338888999987642 222221111 11223332 222 1111 1222334445555555
Q ss_pred --CCEEEECCC--ccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 287 --VNAVIIGSD--EMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 287 --aDaVILGCT--Elpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
-|.-|+|+. +.+...... +..-.+-=+...+++.+++.+...
T Consensus 214 vP~di~vig~d~~~~~~~~~~~-p~lttv~~~~~~~g~~a~~~l~~~ 259 (289)
T 3g85_A 214 IPDDIEIVAIGMNDREYTEFST-PPVTIVDIPIEEMAGTCISLVEKL 259 (289)
T ss_dssp TTTTCEEEEEECSCHHHHHSSS-SCCEEEECCHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCCCcchhhccC-CCCeEEcCCHHHHHHHHHHHHHHH
Confidence 478899988 777543221 111122234456667777666553
No 113
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=87.00 E-value=4.5 Score=36.78 Aligned_cols=82 Identities=17% Similarity=0.023 Sum_probs=49.5
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc-----------------------HHHHHHHHHHhcCCCCc
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV-----------------------GECVAKELKEAKLKPLE 212 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I-----------------------veat~~~~~~~g~k~~~ 212 (376)
++.|.+.++|.|++...... ..++.+++. ++|++.+ ...+++++.+.|-
T Consensus 54 i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~---- 128 (297)
T 3rot_A 54 IESALATYPSGIATTIPSDTAFSKSLQRANKL-NIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTP---- 128 (297)
T ss_dssp HHHHHHTCCSEEEECCCCSSTTHHHHHHHHHH-TCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHC-CCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhcC----
Confidence 35566789999887554333 234554432 4554432 3456777777761
Q ss_pred CCCCceEEEeecchh-----hchHHHHHHHHhcCCceeec
Q 017159 213 AGSGVRIGVLATDAT-----LSAGFYQEKLQNQGFEVVLP 247 (376)
Q Consensus 213 ~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~evv~p 247 (376)
..++|++++.... .+..-|.+.++++|+++...
T Consensus 129 --~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~ 166 (297)
T 3rot_A 129 --SAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEEL 166 (297)
T ss_dssp --TCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred --CCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEe
Confidence 1348999865422 22334888899999887643
No 114
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=86.25 E-value=16 Score=32.50 Aligned_cols=122 Identities=9% Similarity=-0.009 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchh-----hchHHHHHHHHhcCCcee-ecCccccccchHHHHHHH-hc-C-
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDAT-----LSAGFYQEKLQNQGFEVV-LPDKATMEHVIIPTIEAL-NH-R- 266 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~evv-~p~~~~q~~~l~~~ie~l-k~-G- 266 (376)
...+++++.+.|.+ ||++++.+.. .+..-|.+.++++|+++. .......+. ....++.+ +. +
T Consensus 106 ~~~a~~~L~~~G~~--------~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 176 (277)
T 3cs3_A 106 ATQAIEQFVNVGSK--------KVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDFTEPS-GYAAAKKILSQPQT 176 (277)
T ss_dssp HHHHHHHHHHTTCS--------CEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHH-HHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHcCCc--------eEEEEeCCccCccHHHHHHHHHHHHHHcCCCeeEEeCCCChhH-HHHHHHHHHhcCCC
Confidence 34456777777654 8999976532 122337888999998764 222211111 11223333 32 1
Q ss_pred ChHH----HHHHHHHHHHHHhhCC----CCEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHh
Q 017159 267 DMEG----ARNLLRIGIQLLLVRA----VNAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 267 ~~~~----a~~~l~~~i~~L~~~g----aDaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
..+. .......+++.+.+.| -|..|+|+...+...- ..+. +..| =+...+++.+++.+..
T Consensus 177 ~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~~~~~-~~p~-lttv~~~~~~~g~~a~~~l~~ 245 (277)
T 3cs3_A 177 EPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDNSELGAF-VQPR-LATIAYSKHRWGMVAAEKIIH 245 (277)
T ss_dssp SSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSCCHHHHH-SSSC-CBEEECCHHHHHHHHHHHHHH
T ss_pred CCcEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeCCcHHHhc-cCCc-eeEEecCHHHHHHHHHHHHHH
Confidence 2211 1233344556666665 4789999988875321 1221 2333 3456677777776654
No 115
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=86.24 E-value=9.4 Score=36.69 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhch---HHHHHHHHhcCCceee
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSA---GFYQEKLQNQGFEVVL 246 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s---~~Y~~~L~~~G~evv~ 246 (376)
..+.++.++..|.+ +|+++..+...-. ..+++.+++.|++++.
T Consensus 142 ~~~~~~~~~~~g~~--------~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~ 187 (433)
T 4f11_A 142 NPAILKLLKHYQWK--------RVGTLTQDVQRFSEVRNDLTGVLYGEDIEISD 187 (433)
T ss_dssp HHHHHHHHHHTTCC--------EEEEEEESSHHHHHHHHHHHHHSSSSSCEEEE
T ss_pred HHHHHHHHHHcCCc--------EEEEEEecchhhHHHHHHHHHHHHHcCceEEE
Confidence 34566666665554 9999987653222 2245556667887764
No 116
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=86.20 E-value=4.3 Score=38.46 Aligned_cols=78 Identities=15% Similarity=0.024 Sum_probs=45.6
Q ss_pred HHHHHH-cCCcEEEEeCCCch--hhHHHHhccCCCCeecc----------------------HHHHHHHHHHhcCCCCcC
Q 017159 159 RAFLEQ-AGARCIVMPCHISH--AWHGDVSEGCSIPFLHV----------------------GECVAKELKEAKLKPLEA 213 (376)
Q Consensus 159 ~~~L~~-~Gad~IVIaCNTAH--~~~d~L~~~~~vPvl~I----------------------veat~~~~~~~g~k~~~~ 213 (376)
++.|.. .++++|+.+..+.. ...+.++ ..++|+|.+ ....++++.+.|.
T Consensus 67 ~~~l~~~~~v~~iig~~~s~~~~~~~~~~~-~~~iP~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~----- 140 (385)
T 1pea_A 67 AEDFIRNRGVRFLVGCYMSHTRKAVMPVVE-RADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYG----- 140 (385)
T ss_dssp HHHHHHTTCCCEEEECCSHHHHHHHHHHHH-HTTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHTTTC-----
T ss_pred HHHHHhhCCcEEEECCCchHHHHHHHHHHH-hcCceEEECCcccCccCCCCEEEecCChHHhHHHHHHHHHHccC-----
Confidence 344553 78999888765432 2233332 345555432 2345566666554
Q ss_pred CCCceEEEeecchhh---chHHHHHHHHhcCCcee
Q 017159 214 GSGVRIGVLATDATL---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 214 ~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv 245 (376)
+||++++.+... ....|++.++++|++++
T Consensus 141 ---~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~ 172 (385)
T 1pea_A 141 ---ERVVFIGSDYIYPRESNHVMRHLYRQHGGTVL 172 (385)
T ss_dssp ---SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ---cEEEEEeCCChHHHHHHHHHHHHHHHcCCEEE
Confidence 499999865321 22347888889998765
No 117
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=86.12 E-value=11 Score=34.42 Aligned_cols=160 Identities=16% Similarity=0.083 Sum_probs=80.9
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc--------------------HHHHHHHHH-HhcCCCCcCC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV--------------------GECVAKELK-EAKLKPLEAG 214 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I--------------------veat~~~~~-~~g~k~~~~~ 214 (376)
++.+.+.++|.|++...... ..++.+++. ++|++-+ ...+++++. ..|.
T Consensus 51 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~------ 123 (313)
T 3m9w_A 51 IENMINRGVDVLVIIPYNGQVLSNVVKEAKQE-GIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQ------ 123 (313)
T ss_dssp HHHHHHTTCSEEEEECSSTTSCHHHHHHHHTT-TCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHHHCSS------
T ss_pred HHHHHHcCCCEEEEeCCChhhhHHHHHHHHHC-CCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHHhCCC------
Confidence 34566789999988776544 345555432 4554432 334566666 5554
Q ss_pred CCceEEEeecchhh-----chHHHHHHHHhc----CCceeecC---ccccccchHHHHHH-HhcC--ChHH----HHHHH
Q 017159 215 SGVRIGVLATDATL-----SAGFYQEKLQNQ----GFEVVLPD---KATMEHVIIPTIEA-LNHR--DMEG----ARNLL 275 (376)
Q Consensus 215 ~~~rVGlLaT~~T~-----~s~~Y~~~L~~~----G~evv~p~---~~~q~~~l~~~ie~-lk~G--~~~~----a~~~l 275 (376)
++|++++.+... +..-|.+.++++ +++++... ....+. ....++. +... .++. .....
T Consensus 124 --~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ai~~~~d~~a 200 (313)
T 3m9w_A 124 --GNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPEN-ALKIMENALTANNNKIDAVVASNDATA 200 (313)
T ss_dssp --EEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGGCHHH-HHHHHHHHHHHTTTCCCEEEESSHHHH
T ss_pred --CcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeeccCCCcCHHH-HHHHHHHHHHhCCCCeeEEEECCCchH
Confidence 499999753321 223377888877 55554211 111111 1111222 2222 2211 12233
Q ss_pred HHHHHHHhhCCC--CEEEECCCccccccCCC--CCCCCeeeehHHHHHHHHHHHHHh
Q 017159 276 RIGIQLLLVRAV--NAVIIGSDEMQGVLPKD--DPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 276 ~~~i~~L~~~ga--DaVILGCTElpll~~~~--~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
..+++.+.+.|. |..|.|+...+...... .+....+--+...+++.+++.+..
T Consensus 201 ~g~~~al~~~G~~~di~vig~d~~~~~~~~~~~~p~lttv~~~~~~~g~~av~~l~~ 257 (313)
T 3m9w_A 201 GGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVE 257 (313)
T ss_dssp HHHHHHHHTTTCTTTSEECCCSCCHHHHHHHHHTSSCCEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcEEEecCCCHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 445556666665 78899988776543211 111123333455566666666554
No 118
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=85.69 E-value=6.6 Score=36.68 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=46.6
Q ss_pred HHHHH-cCCcEEEEeCCCchhh-HHH--HhccCCCCeecc-----------------------HHHHHHHHHHhcCCCCc
Q 017159 160 AFLEQ-AGARCIVMPCHISHAW-HGD--VSEGCSIPFLHV-----------------------GECVAKELKEAKLKPLE 212 (376)
Q Consensus 160 ~~L~~-~Gad~IVIaCNTAH~~-~d~--L~~~~~vPvl~I-----------------------veat~~~~~~~g~k~~~ 212 (376)
+.|.. .++++|+.+..+.... .-. +-+..++|+|.. ....++.+...|.+
T Consensus 66 ~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~--- 142 (364)
T 3lop_A 66 RDMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTTDPLVFPIKASYQQEIDKMITALVTIGVT--- 142 (364)
T ss_dssp HHHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGSCTTEECCSCCHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhccCCcEEEeCCChHHHHHHHHHHHHHcCCc---
Confidence 34444 4888888766543322 222 333446666653 23456666666654
Q ss_pred CCCCceEEEeecchhh---chHHHHHHHHhcCCcee
Q 017159 213 AGSGVRIGVLATDATL---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 213 ~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv 245 (376)
||++++.+... ....|++.+++.|++++
T Consensus 143 -----~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~ 173 (364)
T 3lop_A 143 -----RIGVLYQEDALGKEAITGVERTLKAHALAIT 173 (364)
T ss_dssp -----CEEEEEETTHHHHHHHHHHHHHHHTTTCCCS
T ss_pred -----eEEEEEeCchhhHHHHHHHHHHHHHcCCcEE
Confidence 99999875432 23347888888898765
No 119
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=85.48 E-value=20 Score=32.17 Aligned_cols=162 Identities=11% Similarity=0.157 Sum_probs=81.3
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc-------------------------HHHHHHHHHHh----
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV-------------------------GECVAKELKEA---- 206 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I-------------------------veat~~~~~~~---- 206 (376)
++.+.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+.
T Consensus 52 ~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~ 130 (309)
T 2fvy_A 52 IDVLLAKGVKALAINLVDPAAAGTVIEKARG-QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAAN 130 (309)
T ss_dssp HHHHHHTTCSEEEECCSSGGGHHHHHHHHHT-TTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEEeCCCcchhHHHHHHHHH-CCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhc
Confidence 34566789999888654432 33555544 46776532 22344555551
Q ss_pred ------cCCCCcCCCCceEEEeecchh-----hchHHHHHHHHhcCCceee----cCccccccchHHHHHHH-hc-C--C
Q 017159 207 ------KLKPLEAGSGVRIGVLATDAT-----LSAGFYQEKLQNQGFEVVL----PDKATMEHVIIPTIEAL-NH-R--D 267 (376)
Q Consensus 207 ------g~k~~~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~evv~----p~~~~q~~~l~~~ie~l-k~-G--~ 267 (376)
| ...++|++++.+.. .+..-|.+.++++|+++.. ......+. -...++.+ .. + .
T Consensus 131 ~~~~~~g------~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 203 (309)
T 2fvy_A 131 QGWDLNK------DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQ-AKDKMDAWLSGPNANK 203 (309)
T ss_dssp GGGCTTC------SSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHH-HHHHHHHHHTSTTGGG
T ss_pred ccccccC------CCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHH-HHHHHHHHHHhCCCCC
Confidence 1 12348998875421 1223378889999876521 11111111 11223332 22 1 2
Q ss_pred hHH----HHHHHHHHHHHHhhCCC-CEEEECCCccccccCCC--CCCCCeeeehHHHHHHHHHHHHHh
Q 017159 268 MEG----ARNLLRIGIQLLLVRAV-NAVIIGSDEMQGVLPKD--DPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 268 ~~~----a~~~l~~~i~~L~~~ga-DaVILGCTElpll~~~~--~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
++. .......+++.+.+.|- |.-|.|+...+...... .+....+--+...+++.+++.+..
T Consensus 204 ~~ai~~~~d~~a~g~~~al~~~g~~di~vig~d~~~~~~~~~~~g~~lttv~~~~~~~g~~a~~~l~~ 271 (309)
T 2fvy_A 204 IEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKN 271 (309)
T ss_dssp CCEEEESSHHHHHHHHHHHHHTTCTTSCEECSBCCHHHHHHHHHTSSCBEEECCHHHHHHHHHHHHHH
T ss_pred ccEEEECCchhHHHHHHHHHHcCCCCceEEecCCCHHHHHHHHcCCceEEEecCHHHHHHHHHHHHHH
Confidence 111 12233445566666776 78888998877543111 111112223455666666666654
No 120
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=85.23 E-value=8.6 Score=34.72 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=77.9
Q ss_pred HHHHHHcCCcEEEEeCCCch--hhHHHHhccCCCCeecc-------------------HHHHHHHHHHhcCCCCcCCCCc
Q 017159 159 RAFLEQAGARCIVMPCHISH--AWHGDVSEGCSIPFLHV-------------------GECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH--~~~d~L~~~~~vPvl~I-------------------veat~~~~~~~g~k~~~~~~~~ 217 (376)
++.+.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+.|. +
T Consensus 69 ~~~l~~~~vdgii~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~--------~ 139 (293)
T 2iks_A 69 IEHLLQRQVDAIIVSTSLPPEHPFYQRWAN-DPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPA--------E 139 (293)
T ss_dssp HHHHHHTTCSEEEECCSSCTTCHHHHTTTT-SSSCEEEEESCCCTTTCEEEEECHHHHHHHHHHHHHTSCC--------S
T ss_pred HHHHHHcCCCEEEEeCCCCCcHHHHHHHHh-CCCCEEEECCccCcCCCCEEEecCHHHHHHHHHHHHHCCC--------C
Confidence 34566789999988654322 23455543 46776543 2345566666655 3
Q ss_pred eEEEeecchh---h--chHHHHHHHHhcCCcee--ecCccccccchHHHHHHH-hcC-ChHH----HHHHHHHHHHHHhh
Q 017159 218 RIGVLATDAT---L--SAGFYQEKLQNQGFEVV--LPDKATMEHVIIPTIEAL-NHR-DMEG----ARNLLRIGIQLLLV 284 (376)
Q Consensus 218 rVGlLaT~~T---~--~s~~Y~~~L~~~G~evv--~p~~~~q~~~l~~~ie~l-k~G-~~~~----a~~~l~~~i~~L~~ 284 (376)
||++++.+.. . +..-|.+.++++|++.. .......+. -...++.+ ..+ ..+. .......+++.+.+
T Consensus 140 ~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~ 218 (293)
T 2iks_A 140 TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREA-AAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLR 218 (293)
T ss_dssp SEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEEESSSCHHH-HHHHHHHHTTTSCCCSEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCcccccHHHHHHHHHHHHHHcCCCccEEEcCCCChhh-HHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHH
Confidence 8999976421 1 22237888888887432 221111111 11223333 222 1110 11122223333333
Q ss_pred CC----CCEEEECCCccccccCCCCCCCCeeee-hHHHHHHHHHHHHHh
Q 017159 285 RA----VNAVIIGSDEMQGVLPKDDPLLKKCID-PMDALARSTVTWARS 328 (376)
Q Consensus 285 ~g----aDaVILGCTElpll~~~~~~~~vpvID-p~~~lA~a~v~~a~~ 328 (376)
.| -|.-|+|+...+.. ....+ .+..|+ +...+++.+++.+..
T Consensus 219 ~g~~vP~di~vvg~d~~~~~-~~~~p-~lttv~~~~~~~g~~a~~~l~~ 265 (293)
T 2iks_A 219 RDGKLPSDLAIATFGDNELL-DFLQC-PVLAVAQRHRDVAERVLEIVLA 265 (293)
T ss_dssp HHSSCCSSCEEEEESCCGGG-GGCSS-EEEEEECCHHHHHHHHHHHHHH
T ss_pred cCCCCCCceEEEEECCHHHH-hhcCC-CeeEEeCCHHHHHHHHHHHHHH
Confidence 22 47888898887753 11222 123332 455666666666544
No 121
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=85.10 E-value=6.3 Score=35.55 Aligned_cols=163 Identities=18% Similarity=0.111 Sum_probs=81.7
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc-------------------------HHHHHHHHHHhcCCC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV-------------------------GECVAKELKEAKLKP 210 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I-------------------------veat~~~~~~~g~k~ 210 (376)
++.+.+.++|.|++...... ..++.++ .++|++.+ ...+++++.+.|.+
T Consensus 56 ~~~~~~~~vdgiii~~~~~~~~~~~~~~~~--~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~- 132 (304)
T 3o1i_D 56 LALCTQWGANAIILGTVDPHAYEHNLKSWV--GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPK- 132 (304)
T ss_dssp HHHHHHHTCSEEEECCSSTTSSTTTHHHHT--TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBT-
T ss_pred HHHHHHcCCCEEEEeCCChhHHHHHHHHHc--CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhccc-
Confidence 34566789999987655443 3467776 57887765 12346666666521
Q ss_pred CcCCCCceEEEeecchh---h--chHHHHHHHHhcCCceeecCcc--ccccchHHHHHH-HhcCChH---HHHHHHHHHH
Q 017159 211 LEAGSGVRIGVLATDAT---L--SAGFYQEKLQNQGFEVVLPDKA--TMEHVIIPTIEA-LNHRDME---GARNLLRIGI 279 (376)
Q Consensus 211 ~~~~~~~rVGlLaT~~T---~--~s~~Y~~~L~~~G~evv~p~~~--~q~~~l~~~ie~-lk~G~~~---~a~~~l~~~i 279 (376)
....++|++++.+.. . +..-|.+.++++|+++...... ..+. ....++. ++..+++ ........++
T Consensus 133 --~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ai~~~d~~a~g~~ 209 (304)
T 3o1i_D 133 --GSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSFWADNDKEL-QRNLVQRVIDMGNIDYIVGSAVAIEAAI 209 (304)
T ss_dssp --TTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEEEEECCCCCSCHHH-HHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred --CCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEEeecCCCcHHH-HHHHHHHHHcCCCCCEEEecCcchHHHH
Confidence 011358999965421 1 2233777788888776532111 1110 1111221 2111111 0122334455
Q ss_pred HHHhhCCC--CEEEECCCccccccCCCC--CCCC-eeeehHHHHHHHHHHHHHh
Q 017159 280 QLLLVRAV--NAVIIGSDEMQGVLPKDD--PLLK-KCIDPMDALARSTVTWARS 328 (376)
Q Consensus 280 ~~L~~~ga--DaVILGCTElpll~~~~~--~~~v-pvIDp~~~lA~a~v~~a~~ 328 (376)
+.+.+.|. |.-|+|+--.|-+..... .... .+-++. .+++.+++.+..
T Consensus 210 ~al~~~g~~~di~vvg~d~~p~~~~~i~~g~~~~~~~~~~~-~~g~~av~~l~~ 262 (304)
T 3o1i_D 210 SELRSADKTHDIGLVSVYLSHGVYRGLLRNKVLFAPTDKMV-QQGRLSVMQAAH 262 (304)
T ss_dssp HHHTTTTCGGGSEEBCSSCCHHHHHHHTTTSCCBCCBCCHH-HHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEeCCCHHHHHHHHcCcceEEEecCHH-HHHHHHHHHHHH
Confidence 66777776 788888865554432111 0111 223344 556666555544
No 122
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=84.94 E-value=6.5 Score=35.81 Aligned_cols=131 Identities=17% Similarity=0.146 Sum_probs=68.2
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHH---HHHHHHhcCCCCcCCCCceEEEeecchhhch-HHHHHHH
Q 017159 162 LEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECV---AKELKEAKLKPLEAGSGVRIGVLATDATLSA-GFYQEKL 237 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat---~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s-~~Y~~~L 237 (376)
++..|+|+|+=.-.| .+.|++.+++||+.|--.. .+.++... ..++|||+++-..++.. ..+.+.|
T Consensus 59 ~~~~~~dVIISRGgt----a~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~------~~~~kIavVg~~~~~~~~~~i~~ll 128 (225)
T 2pju_A 59 LANERCDAIIAAGSN----GAYLKSRLSVPVILIKPSGYDVLQFLAKAG------KLTSSIGVVTYQETIPALVAFQKTF 128 (225)
T ss_dssp TTTSCCSEEEEEHHH----HHHHHTTCSSCEEEECCCHHHHHHHHHHTT------CTTSCEEEEEESSCCHHHHHHHHHH
T ss_pred HhcCCCeEEEeCChH----HHHHHhhCCCCEEEecCCHHHHHHHHHHHH------hhCCcEEEEeCchhhhHHHHHHHHh
Confidence 344579966655444 4567788899999873222 33333321 12358999999776553 2233333
Q ss_pred HhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCCccccccCCCCCCCCeeeehHHH
Q 017159 238 QNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSDEMQGVLPKDDPLLKKCIDPMDA 317 (376)
Q Consensus 238 ~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCTElpll~~~~~~~~vpvIDp~~~ 317 (376)
|+++..-.-. . .+.+...++.+.++|+++|| |++-..-+.+.. +...-+|.+ ..
T Consensus 129 ---~~~i~~~~~~----------------~----~ee~~~~i~~l~~~G~~vVV-G~~~~~~~A~~~-Gl~~vlI~s-~e 182 (225)
T 2pju_A 129 ---NLRLDQRSYI----------------T----EEDARGQINELKANGTEAVV-GAGLITDLAEEA-GMTGIFIYS-AA 182 (225)
T ss_dssp ---TCCEEEEEES----------------S----HHHHHHHHHHHHHTTCCEEE-ESHHHHHHHHHT-TSEEEESSC-HH
T ss_pred ---CCceEEEEeC----------------C----HHHHHHHHHHHHHCCCCEEE-CCHHHHHHHHHc-CCcEEEECC-HH
Confidence 5544321110 1 11234566678889999754 554433332221 111233444 45
Q ss_pred HHHHHHHHHHh
Q 017159 318 LARSTVTWARS 328 (376)
Q Consensus 318 lA~a~v~~a~~ 328 (376)
-++++++.|..
T Consensus 183 SI~~Ai~eA~~ 193 (225)
T 2pju_A 183 TVRQAFSDALD 193 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 123
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=84.77 E-value=15 Score=32.92 Aligned_cols=153 Identities=9% Similarity=-0.013 Sum_probs=80.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccH-------------------HHHHHHHHHhcCCCCcCCCCceE
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVG-------------------ECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iv-------------------eat~~~~~~~g~k~~~~~~~~rV 219 (376)
++.|.+.++|.|++.. ..++++. ..++|++-+- ..+++++. .|. +||
T Consensus 60 ~~~l~~~~vdgiIi~~----~~~~~~~-~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~-~G~--------~~I 125 (277)
T 3hs3_A 60 IINFENNNVDGIITSA----FTIPPNF-HLNTPLVMYDSANINDDIVRIVSNNTKGGKESIKLLS-KKI--------EKV 125 (277)
T ss_dssp HHHHHHTTCSEEEEEC----CCCCTTC-CCSSCEEEESCCCCCSSSEEEEECHHHHHHHHHHTSC-TTC--------CEE
T ss_pred HHHHHhCCCCEEEEcc----hHHHHHH-hCCCCEEEEcccccCCCCEEEEEChHHHHHHHHHHHH-hCC--------CEE
Confidence 3557778999998876 2233332 2366765432 22334444 443 499
Q ss_pred EEeecchh-----hchHHHHHHHHhcCCceeec-CccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHHHhhCC-
Q 017159 220 GVLATDAT-----LSAGFYQEKLQNQGFEVVLP-DKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQLLLVRA- 286 (376)
Q Consensus 220 GlLaT~~T-----~~s~~Y~~~L~~~G~evv~p-~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~L~~~g- 286 (376)
|+++.+.. .+..-|.+.++++|+++... ...... ...++. +..+ ..+ ........+++.+.+.|
T Consensus 126 ~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~ 202 (277)
T 3hs3_A 126 LIQHWPLSLPTIRERIEAMTAEASKLKIDYLLEETPENNP---YISAQSALNKSNQFDAIITVNDLYAAEIIKEAKRRNL 202 (277)
T ss_dssp EEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSCH---HHHHHHHHHTGGGCSEEECSSHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCCCccCCch---HHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCC
Confidence 99976532 12233788899999876431 111110 112222 2221 111 11222334455565555
Q ss_pred ---CCEEEECCCccccccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 287 ---VNAVIIGSDEMQGVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 287 ---aDaVILGCTElpll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
-|.-|+|+...+... ...+....+-=+...+++.+++.+...
T Consensus 203 ~vP~di~vig~d~~~~~~-~~~p~lttv~~~~~~~g~~av~~l~~~ 247 (277)
T 3hs3_A 203 KIPDDFQLVGYDNNILCG-YTSPTISTIDQNPKLIGQTAAHRLLDL 247 (277)
T ss_dssp CTTTTCEEECSBCCGGGG-TSSSCCBEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEeeCCcHHHh-cCCCCccEEecCHHHHHHHHHHHHHHH
Confidence 388999999988532 222222233345667777777777654
No 124
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=84.70 E-value=11 Score=34.90 Aligned_cols=160 Identities=11% Similarity=0.042 Sum_probs=79.5
Q ss_pred HHHHHcCCcEEEEeCCCc--hhhHHHHhccCCCCeecc--------------------------HHHHHHHHHHh-c-CC
Q 017159 160 AFLEQAGARCIVMPCHIS--HAWHGDVSEGCSIPFLHV--------------------------GECVAKELKEA-K-LK 209 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTA--H~~~d~L~~~~~vPvl~I--------------------------veat~~~~~~~-g-~k 209 (376)
+.+.+.++|.|+++.+.. ...++.+.+. ++|++-+ ...+++++.+. | .
T Consensus 98 ~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~- 175 (342)
T 1jx6_A 98 MEALKSKSDYLIFTLDTTRHRKFVEHVLDS-TNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKH- 175 (342)
T ss_dssp HHHHHTTCSEEEECCSSSTTHHHHHHHHHH-CSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTT-
T ss_pred HHHHhcCCCEEEEeCChHhHHHHHHHHHHc-CCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCC-
Confidence 446668999999954432 2345555432 4554422 23356677775 4 4
Q ss_pred CCcCCCCceEEEeecchh----hchHHHHHHHHhcCC-cee--ecCccccccchHHHHHH-HhcC-ChH----HHHHHHH
Q 017159 210 PLEAGSGVRIGVLATDAT----LSAGFYQEKLQNQGF-EVV--LPDKATMEHVIIPTIEA-LNHR-DME----GARNLLR 276 (376)
Q Consensus 210 ~~~~~~~~rVGlLaT~~T----~~s~~Y~~~L~~~G~-evv--~p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~ 276 (376)
++|++++.+.. .+..-|.+.++++|. +.. .......+. -...++. +..+ +++ .......
T Consensus 176 -------~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~nd~~A~ 247 (342)
T 1jx6_A 176 -------TYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQS-GYDAAKASLAKHPDVDFIYACSTDVAL 247 (342)
T ss_dssp -------CEEEEECCSTTHHHHHHHHHHHHHHHHHHCCEEEEEECCCSSHHH-HHHHHHHHHHHCCCCSEEEESSHHHHH
T ss_pred -------ceEEEEEcCCcchhhHHHHHHHHHHHhCCCcEEEEEecCCCCHHH-HHHHHHHHHHhCCCccEEEECCChhHH
Confidence 49999975432 122237788888876 321 222111111 1112222 2222 111 0112223
Q ss_pred HHHHHHhhCC-CCEEEECCCccc--cccCCCCCCCCeeeehHHHHHHHHHHHHHhc
Q 017159 277 IGIQLLLVRA-VNAVIIGSDEMQ--GVLPKDDPLLKKCIDPMDALARSTVTWARSN 329 (376)
Q Consensus 277 ~~i~~L~~~g-aDaVILGCTElp--ll~~~~~~~~vpvIDp~~~lA~a~v~~a~~~ 329 (376)
.+++.+.+.| -|..|.|+...+ +..-....+.+..|+....+++.+++.+...
T Consensus 248 g~~~al~~~g~~di~vvg~D~~~~~~~~~~~g~p~lttv~~~~~~g~~a~~~l~~~ 303 (342)
T 1jx6_A 248 GAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAIKWD 303 (342)
T ss_dssp HHHHHHHHHTCTTSEEBCSBCCHHHHHHHHHTSSCEEEEECTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcEEEEeCCCHHHHHHHHcCCceEEEecChHHhHHHHHHHHHHH
Confidence 3344454445 378899998877 2210000112344544377888777776553
No 125
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=83.71 E-value=8 Score=35.49 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=25.6
Q ss_pred HHHHHHHHh-cCCCCcCCCCceEEEeecchhh---chHHHHHHHHhcCCcee
Q 017159 198 CVAKELKEA-KLKPLEAGSGVRIGVLATDATL---SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 198 at~~~~~~~-g~k~~~~~~~~rVGlLaT~~T~---~s~~Y~~~L~~~G~evv 245 (376)
..++.+.+. |. +||++++.+... ....|++.++++|++++
T Consensus 127 ~~~~~l~~~~g~--------~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~ 170 (346)
T 1usg_A 127 TAAKYILETVKP--------QRIAIIHDKQQYGEGLARSVQDGLKAANANVV 170 (346)
T ss_dssp HHHHHHHHTTCC--------SSEEEEECSSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhcCC--------CeEEEEECCCchHHHHHHHHHHHHHHcCCEEE
Confidence 445566553 54 389999865322 22347788888898775
No 126
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=83.18 E-value=1.6 Score=40.74 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCe
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPF 192 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPv 192 (376)
+.+.++.++++|||+|++.|-..-....++.+.+++|+
T Consensus 170 ai~ra~a~~eAGAd~i~~e~~~~~~~~~~i~~~~~~P~ 207 (255)
T 2qiw_A 170 AIKRIKLMEQAGARSVYPVGLSTAEQVERLVDAVSVPV 207 (255)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCSHHHHHHHHTTCSSCB
T ss_pred HHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHhCCCCE
Confidence 44556678999999999999753355888888888886
No 127
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=83.16 E-value=8.3 Score=36.52 Aligned_cols=78 Identities=8% Similarity=0.026 Sum_probs=48.7
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeec------------------cHHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 160 AFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLH------------------VGECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~------------------Iveat~~~~~~~g~k~~~~~~~~rVG 220 (376)
++|.+.|+.+|+=|.++.... ...+-+..++|+|+ ...+.++.++..|.+ +|+
T Consensus 54 ~~li~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~~~~~~~~~~~~~p~~~~a~~~~~~~~gw~--------~va 125 (376)
T 3hsy_A 54 CSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWD--------KFA 125 (376)
T ss_dssp HHHHHTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCCCCSCCTTEEECSCCCHHHHHHHHHHTTCC--------EEE
T ss_pred HHHHhcCcEEEECCCchhHHHHHHHHhccCcCceeecCCCCcccCCceEEeCccHHHHHHHHHHhcCCC--------EEE
Confidence 445556888877666554332 45555566777774 345667777666654 999
Q ss_pred Eeecchhhch---HHHHHHHHhcCCceee
Q 017159 221 VLATDATLSA---GFYQEKLQNQGFEVVL 246 (376)
Q Consensus 221 lLaT~~T~~s---~~Y~~~L~~~G~evv~ 246 (376)
++. +...-. ..+.+.+++.|.+++.
T Consensus 126 ii~-d~~~g~~~~~~~~~~~~~~g~~v~~ 153 (376)
T 3hsy_A 126 YLY-DSDRGLSTLQAVLDSAAEKKWQVTA 153 (376)
T ss_dssp EEE-CSTTCSHHHHHHHHHHHHHTCEEEE
T ss_pred EEE-eCchhHHHHHHHHHHhhhcCCeEEE
Confidence 998 543322 2355667778888763
No 128
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=82.61 E-value=8.4 Score=35.56 Aligned_cols=126 Identities=10% Similarity=0.051 Sum_probs=67.5
Q ss_pred cCCeEEEEcCCChHHHHHHHHHHHHHhh-hCCCC-CCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 81 QANTIGIIGGVSVSSTLNFLGKLVWYSA-KDAEE-CPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 81 ~~k~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~-~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
+.++||++=.. +-.||..+.+... ...+. ...+++.+.. .+. +.. .+.
T Consensus 5 ~~~~Igvi~~~----~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~--------------------~~~--~~~----~~~ 54 (325)
T 2x7x_A 5 PHFRIGVAQCS----DDSWRHKMNDEILREAMFYNGVSVEIRSAG--------------------DDN--SKQ----AED 54 (325)
T ss_dssp -CCEEEEEESC----CSHHHHHHHHHHHHHHTTSSSCEEEEEECT--------------------TCH--HHH----HHH
T ss_pred CCeEEEEEecC----CCHHHHHHHHHHHHHHHHcCCcEEEEeCCC--------------------CCH--HHH----HHH
Confidence 35689998532 4467777777664 22232 4455443311 011 121 122
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc--------------------HHHHHHHHHHh--cCCCCcC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV--------------------GECVAKELKEA--KLKPLEA 213 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~--g~k~~~~ 213 (376)
++.|.+.++|.|++...... ..++.+.+ .++|++.+ ...+++++.+. |.
T Consensus 55 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~----- 128 (325)
T 2x7x_A 55 VHYFMDEGVDLLIISANEAAPMTPIVEEAYQ-KGIPVILVDRKILSDKYTAYIGADNYEIGRSVGNYIASSLKGK----- 128 (325)
T ss_dssp HHHHHHTTCSEEEECCSSHHHHHHHHHHHHH-TTCCEEEESSCCSSSCSSEEEEECHHHHHHHHHHHHHHHTTTE-----
T ss_pred HHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH-CCCeEEEeCCCCCCcceeEEEecCHHHHHHHHHHHHHHHcCCC-----
Confidence 34456689998887654432 23444432 35565432 23345666664 54
Q ss_pred CCCceEEEeecchh-----hchHHHHHHHHhc-CCcee
Q 017159 214 GSGVRIGVLATDAT-----LSAGFYQEKLQNQ-GFEVV 245 (376)
Q Consensus 214 ~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~-G~evv 245 (376)
+||++++.+.. .+..-|.+.++++ |+++.
T Consensus 129 ---~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~ 163 (325)
T 2x7x_A 129 ---GNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLI 163 (325)
T ss_dssp ---EEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEE
T ss_pred ---ceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEE
Confidence 49999976422 1223378888888 87653
No 129
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=82.23 E-value=13 Score=35.45 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=48.9
Q ss_pred HHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeec------------------cHHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 160 AFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLH------------------VGECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~------------------Iveat~~~~~~~g~k~~~~~~~~rVG 220 (376)
..|.+.|+.+|+=|.++.... ...+-+..++|+|+ ...+.++.++..|.+ +|+
T Consensus 63 ~~li~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~~~~~~~~~~~~~~p~~~~a~~~~~~~~gw~--------~va 134 (389)
T 3o21_A 63 CSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQMRPALKGAILSLLSYYKWE--------KFV 134 (389)
T ss_dssp HHHHTTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSCCCSSCCSSEEECSCCSHHHHHHHHHHHTCC--------EEE
T ss_pred HHHHhcCcEEEEeCCChhHHHHHHHHhccCCCceeecCCCCccCCceEEEEccCHHHHHHHHHHhCCCC--------EEE
Confidence 345555888887776655443 55566666788872 245566666666665 999
Q ss_pred Eeecchhhch---HHHHHHHHhcCCceee
Q 017159 221 VLATDATLSA---GFYQEKLQNQGFEVVL 246 (376)
Q Consensus 221 lLaT~~T~~s---~~Y~~~L~~~G~evv~ 246 (376)
++. +...-. ..+.+.+++.|.+++.
T Consensus 135 ii~-d~~~g~~~~~~~~~~~~~~g~~v~~ 162 (389)
T 3o21_A 135 YLY-DTERGFSVLQAIMEAAVQNNWQVTA 162 (389)
T ss_dssp EEE-CSTTCSHHHHHHHHHHHHTTCEEEE
T ss_pred EEE-cCcHHHHHHHHHHHHhhcCCCeEEE
Confidence 998 433222 2355667778887764
No 130
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=81.78 E-value=11 Score=36.10 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=33.8
Q ss_pred ceEEEeecchhhc---hHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 217 VRIGVLATDATLS---AGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 217 ~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
+||++|..+...- ...+++.+++.|++++....- ..+.. .+...+.++.+.++|+|++.
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~-------------~~~~~-----d~~~~l~~i~~~~~d~v~~~ 226 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETV-------------AIPVS-----DWGPTLAKLRADPPAVIVVT 226 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEEC-------------CSSCS-----CCHHHHHHHHHSCCSEEEEC
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecC-------------CCCCc-----cHHHHHHHHHhcCCCEEEEc
Confidence 5899998765322 234666777778877632110 00110 12333445566788888887
Q ss_pred CC
Q 017159 294 SD 295 (376)
Q Consensus 294 CT 295 (376)
|.
T Consensus 227 ~~ 228 (419)
T 3h5l_A 227 HF 228 (419)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 131
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=81.38 E-value=3 Score=39.89 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=62.7
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
.|+.|-++|---.+..++.+||.......++...+++|.-..+- .... ..++.+++ ++.
T Consensus 120 ~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa---~~~~--------------gldeAi~R----a~a 178 (302)
T 3fa4_A 120 TKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDS---LQTH--------------GYEESVAR----LRA 178 (302)
T ss_dssp C-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECC---HHHH--------------CHHHHHHH----HHH
T ss_pred CcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecc---cccC--------------CHHHHHHH----HHH
Confidence 47788888877778889999998877543322356766543321 1100 01333333 344
Q ss_pred HHHcCCcEEEEeCCCchhhHHHHhccC-CCCe-eccHHH------HHHHHHHhcCC
Q 017159 162 LEQAGARCIVMPCHISHAWHGDVSEGC-SIPF-LHVGEC------VAKELKEAKLK 209 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~~d~L~~~~-~vPv-l~Ivea------t~~~~~~~g~k 209 (376)
..++|||+|.+++-+.-.-+.++.+.+ ++|+ ++|++- +.+++.+.|++
T Consensus 179 y~eAGAD~ifi~g~~~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~~~eL~~lGv~ 234 (302)
T 3fa4_A 179 ARDAGADVGFLEGITSREMARQVIQDLAGWPLLLNMVEHGATPSISAAEAKEMGFR 234 (302)
T ss_dssp HHTTTCSEEEETTCCCHHHHHHHHHHTTTSCEEEECCTTSSSCCCCHHHHHHHTCS
T ss_pred HHHcCCCEEeecCCCCHHHHHHHHHHhcCCceeEEEecCCCCCCCCHHHHHHcCCC
Confidence 567999999999976444477777777 4786 466542 47789998873
No 132
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=80.93 E-value=17 Score=32.61 Aligned_cols=159 Identities=13% Similarity=0.118 Sum_probs=78.7
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc--------------------HHHHHHHHHHh-c-CCCCcCC
Q 017159 160 AFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV--------------------GECVAKELKEA-K-LKPLEAG 214 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~-g-~k~~~~~ 214 (376)
+.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+. | .
T Consensus 51 ~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~gg~------ 123 (283)
T 2ioy_A 51 EDLIQQKVDVLLINPVDSDAVVTAIKEANS-KNIPVITIDRSANGGDVVCHIASDNVKGGEMAAEFIAKALKGK------ 123 (283)
T ss_dssp HHHHHTTCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCSSSCCSEEEEECHHHHHHHHHHHHHHHTTTC------
T ss_pred HHHHHcCCCEEEEeCCchhhhHHHHHHHHH-CCCeEEEecCCCCCcceeEEEecChHHHHHHHHHHHHHHcCCC------
Confidence 4456789999887543322 23455433 34555422 23455667766 3 4
Q ss_pred CCceEEEeecchh-----hchHHHHHHHHhc-CCceee--cCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHH
Q 017159 215 SGVRIGVLATDAT-----LSAGFYQEKLQNQ-GFEVVL--PDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQ 280 (376)
Q Consensus 215 ~~~rVGlLaT~~T-----~~s~~Y~~~L~~~-G~evv~--p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~ 280 (376)
+||++++.+.. .+..-|.+.++++ |+++.. ......+. -...++. +... +++ ........+++
T Consensus 124 --~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~ 200 (283)
T 2ioy_A 124 --GNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQAADFDRSK-GLSVMENILQAQPKIDAVFAQNDEMALGAIK 200 (283)
T ss_dssp --EEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHH-HHHHHHHHHHHCSCCCEEEESSHHHHHHHHH
T ss_pred --ceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEeeccCCCCHHH-HHHHHHHHHHhCCCccEEEECCchHHHHHHH
Confidence 49999975321 1223378888887 876542 11111111 1111222 2221 111 11223344455
Q ss_pred HHhhCCC-CEEEECCCccccccCCC--CCCCCeeeehHHHHHHHHHHHHHh
Q 017159 281 LLLVRAV-NAVIIGSDEMQGVLPKD--DPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 281 ~L~~~ga-DaVILGCTElpll~~~~--~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
.+.+.|. |.-|.|....+...... .+....+-=+...+++.+++.+..
T Consensus 201 al~~~G~~di~viG~D~~~~~~~~~~~~~~lttv~~~~~~~g~~a~~~l~~ 251 (283)
T 2ioy_A 201 AIEAANRQGIIVVGFDGTEDALKAIKEGKMAATIAQQPALMGSLGVEMADK 251 (283)
T ss_dssp HHHHTTCCCCEEEEEECCHHHHHHHHTTSCCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCcEEEEeCCCHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 6666675 88888888777542111 111112333455666666666544
No 133
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=80.52 E-value=26 Score=32.49 Aligned_cols=78 Identities=12% Similarity=0.008 Sum_probs=48.4
Q ss_pred HHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceEEE
Q 017159 161 FLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 161 ~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rVGl 221 (376)
.|.+.|+.+|+=|.++.-.. ...+-+..+||+++. .++.++-++..|.+ +|++
T Consensus 64 ~l~~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~w~--------~vai 135 (389)
T 4gpa_A 64 SQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWN--------CFVF 135 (389)
T ss_dssp HHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCSSCCSSEEECSCCCHHHHHHHHHHTTCC--------EEEE
T ss_pred HHHhcCCEEEEeCCccHHHHHHHHHHHHhCCCceeccccccccccCCccccCCHHHHHHHHHHHcCCc--------EEEE
Confidence 35567999887766544333 555666667776642 45666667766654 8999
Q ss_pred eecchhhchHH--HHHHHHhcCCceee
Q 017159 222 LATDATLSAGF--YQEKLQNQGFEVVL 246 (376)
Q Consensus 222 LaT~~T~~s~~--Y~~~L~~~G~evv~ 246 (376)
+.....-..+. +.+.+.+.|.++..
T Consensus 136 i~~~d~~~~~~~~~~~~~~~~g~~v~~ 162 (389)
T 4gpa_A 136 LYDTDRGYSILQAIMEKAGQNGWHVSA 162 (389)
T ss_dssp EECSTTCSHHHHHHHHHHHTTTCEEEE
T ss_pred EEecchhhHHHHHHHHHHHhcCceEEE
Confidence 97654333222 34556667877764
No 134
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=80.19 E-value=17 Score=32.76 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=79.2
Q ss_pred HHHHHHcCCcEEEEeCCCchhh---HHHHhccCCCCeeccH-------------------------HHHHHHHHHh-cCC
Q 017159 159 RAFLEQAGARCIVMPCHISHAW---HGDVSEGCSIPFLHVG-------------------------ECVAKELKEA-KLK 209 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~---~d~L~~~~~vPvl~Iv-------------------------eat~~~~~~~-g~k 209 (376)
++.+.+.++|.|++........ ++.+++ .++|++-+- ..+++++.+. |.+
T Consensus 50 i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~ 128 (306)
T 8abp_A 50 IDSLAASGAKGFVICTPDPKLGSAIVAKARG-YDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKR 128 (306)
T ss_dssp HHHHHHTTCCEEEEECSCGGGHHHHHHHHHH-TTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCCchhhHHHHHHHHH-CCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhc
Confidence 3456677899888776543322 444443 255554322 2344455533 432
Q ss_pred CCcCCCCceEEEee-cc-----hhhchHHHHHHHHhcCCc---eee--cCccccccchHHHHHH-HhcC-ChH------H
Q 017159 210 PLEAGSGVRIGVLA-TD-----ATLSAGFYQEKLQNQGFE---VVL--PDKATMEHVIIPTIEA-LNHR-DME------G 270 (376)
Q Consensus 210 ~~~~~~~~rVGlLa-T~-----~T~~s~~Y~~~L~~~G~e---vv~--p~~~~q~~~l~~~ie~-lk~G-~~~------~ 270 (376)
....++||+++ .. ...+..-|.+.++++|+. ++. ......+. -...++. +... +++ .
T Consensus 129 ---~~~~~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~a~~i~~~ 204 (306)
T 8abp_A 129 ---GWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG-AFDAANSMLVQHPEVKHWLIVGM 204 (306)
T ss_dssp ---TCCGGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHH-HHHHHHHHHTTCTTCSEEEEECS
T ss_pred ---CCCccceEEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCChHH-HHHHHHHHHHhCCCCceEEEEeC
Confidence 00123899886 21 122233488889888753 322 11111111 1122233 2221 111 1
Q ss_pred HHHHHHHHHHHHhhCCC---CEEEECCCccccc---cCCC-CCCCCeeeehHHHHHHHHHHHHHh
Q 017159 271 ARNLLRIGIQLLLVRAV---NAVIIGSDEMQGV---LPKD-DPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 271 a~~~l~~~i~~L~~~ga---DaVILGCTElpll---~~~~-~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
.......+++.+.+.|. |..|.|+...+.+ .+.. .+....+--+...+++.+++.+..
T Consensus 205 nD~~A~g~~~al~~~g~~v~di~vvG~D~~~~~~~~~~~~~~~~~ttv~~~~~~~G~~a~~~l~~ 269 (306)
T 8abp_A 205 NDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 269 (306)
T ss_dssp SHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHTSSSCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCCceEEEEeCcHHHHHHHHcCCCcceEEEecCCHHHHHHHHHHHHHH
Confidence 12233455666777775 8999999998822 2221 011112333455666666665544
No 135
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=79.60 E-value=5.8 Score=35.89 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCeeccH----HHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 156 RHKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFLHVG----ECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl~Iv----eat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
.+.++.++++|+|.|.+..-++. .++.++++.+++|++-.. ..-++.+.+.|.. .| ++|
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad--------~V-~ig 108 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGAD--------KV-SIN 108 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCS--------EE-CCS
T ss_pred HHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCC--------ee-ehh
Confidence 34566788999999987644321 236788888999997651 1335555566653 34 478
Q ss_pred cchhhchHHHHHHHHhcCCcee
Q 017159 224 TDATLSAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~evv 245 (376)
|..--...+..+..+.+|.+.+
T Consensus 109 ~~~l~dp~~~~~~~~~~g~~~i 130 (247)
T 3tdn_A 109 TAAVENPSLITQIAQTFGSQAV 130 (247)
T ss_dssp HHHHHCTHHHHHHHHHHC----
T ss_pred hHHhhChHHHHHHHHHhCCCcE
Confidence 7654455566677676675533
No 136
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=79.49 E-value=20 Score=31.89 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=78.5
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc--------------------HHHHHHHHHHhcCCCCcCCCC
Q 017159 160 AFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV--------------------GECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I--------------------veat~~~~~~~g~k~~~~~~~ 216 (376)
+.+.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+.|. ..
T Consensus 51 ~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~i~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~------g~ 123 (271)
T 2dri_A 51 QDLTVRGTKILLINPTDSDAVGNAVKMANQ-ANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAG------EG 123 (271)
T ss_dssp HHHTTTTEEEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCSSSCCSEEEEECHHHHHHHHHHHHHHHHC------TT
T ss_pred HHHHHcCCCEEEEeCCChHHHHHHHHHHHH-CCCcEEEecCCCCCCceeEEEecChHHHHHHHHHHHHHHcC------CC
Confidence 4466678998887543322 22444433 24554422 2335677777642 12
Q ss_pred ceEEEeecchh-----hchHHHHHHHHhcCCceee--cCccccccchHHHHHH-HhcC-ChH----HHHHHHHHHHHHHh
Q 017159 217 VRIGVLATDAT-----LSAGFYQEKLQNQGFEVVL--PDKATMEHVIIPTIEA-LNHR-DME----GARNLLRIGIQLLL 283 (376)
Q Consensus 217 ~rVGlLaT~~T-----~~s~~Y~~~L~~~G~evv~--p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~~l~~~i~~L~ 283 (376)
+||++++.+.. .+..-|.+.++++|+++.. ......+. -...++. +..+ .++ ........+++.+.
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~ 202 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIK-GLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQ 202 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCHHH-HHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEecCCCCCHHH-HHHHHHHHHHhCCCccEEEECCCcHHHHHHHHHH
Confidence 49999975321 1223388889999987542 11111110 1111222 2221 111 01122233344444
Q ss_pred hCCC-CEEEECCCccccccCC--CCCCCCeeeehHHHHHHHHHHHHHh
Q 017159 284 VRAV-NAVIIGSDEMQGVLPK--DDPLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 284 ~~ga-DaVILGCTElpll~~~--~~~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
+.|. |.-|.|....+..... ..+....+--+...+++.+++.+..
T Consensus 203 ~~g~~dv~vvGfD~~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~~ 250 (271)
T 2dri_A 203 TAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADK 250 (271)
T ss_dssp HHTCCSCEEEEEECCHHHHHHHHTTSSCEEEECCHHHHHHHHHHHHHH
T ss_pred HcCCCCcEEEEecCCHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHH
Confidence 4443 7888888777754211 0121112333556677777776654
No 137
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=78.85 E-value=11 Score=35.46 Aligned_cols=79 Identities=9% Similarity=0.028 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCcEEEEe------CCCchhhHHHHhccCCCCeecc--------------------------HHHHHHHHH
Q 017159 157 HKRAFLEQAGARCIVMP------CHISHAWHGDVSEGCSIPFLHV--------------------------GECVAKELK 204 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIa------CNTAH~~~d~L~~~~~vPvl~I--------------------------veat~~~~~ 204 (376)
..++.|.+.|+++|+=+ |.........+-+..++|+|+. ..+.++.++
T Consensus 56 ~~~~~Li~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~ 135 (384)
T 3qek_A 56 SVCEDLISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMR 135 (384)
T ss_dssp HHHHHTGGGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHH
Confidence 34555555688888773 2222222445555667776642 344566665
Q ss_pred HhcCCCCcCCCCceEEEeecchhhch---HHHHHHHHhcCCc
Q 017159 205 EAKLKPLEAGSGVRIGVLATDATLSA---GFYQEKLQNQGFE 243 (376)
Q Consensus 205 ~~g~k~~~~~~~~rVGlLaT~~T~~s---~~Y~~~L~~~G~e 243 (376)
..|.+ +|+++..+...-. ..+++.+++.|.+
T Consensus 136 ~~gw~--------~v~ii~~d~~~G~~~~~~~~~~~~~~g~~ 169 (384)
T 3qek_A 136 LFNWN--------HVILIVSDDHEGRAAQKKLETLLEGKESK 169 (384)
T ss_dssp HTTCC--------EEEEEEESSHHHHHHHHHHHHHHC-----
T ss_pred HcCCe--------EEEEEEEcCcccHHHHHHHHHHHHhccCc
Confidence 55554 9999987553322 3466677777764
No 138
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=77.19 E-value=36 Score=30.28 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=77.4
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCee----------------cc-----HHHHHHHHHHh------cCC
Q 017159 160 AFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFL----------------HV-----GECVAKELKEA------KLK 209 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl----------------~I-----veat~~~~~~~------g~k 209 (376)
+.|.+.++|.|++...... ..++.+++ .++|++ +. ...+++++.+. |.+
T Consensus 52 ~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r 130 (290)
T 2fn9_A 52 DAIIAAGYDAIIFNPTDADGSIANVKRAKE-AGIPVFCVDRGINARGLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAK 130 (290)
T ss_dssp HHHHHTTCSEEEECCSCTTTTHHHHHHHHH-TTCCEEEESSCCSCSSSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHHHcCCCEEEEecCChHHHHHHHHHHHH-CCCeEEEEecCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhcccCCccc
Confidence 4456678998887543322 23455543 234432 21 34456667766 543
Q ss_pred CCcCCCCce--EEEeecch---h--hchHHHHHHHHhc-CCceee--cCccccccchHHHHHH-HhcC-ChH----HHHH
Q 017159 210 PLEAGSGVR--IGVLATDA---T--LSAGFYQEKLQNQ-GFEVVL--PDKATMEHVIIPTIEA-LNHR-DME----GARN 273 (376)
Q Consensus 210 ~~~~~~~~r--VGlLaT~~---T--~~s~~Y~~~L~~~-G~evv~--p~~~~q~~~l~~~ie~-lk~G-~~~----~a~~ 273 (376)
| |++++.+. + .+..-|.+.++++ |+++.. ......+. ....++. +..+ ..+ ....
T Consensus 131 --------~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~~d~ 201 (290)
T 2fn9_A 131 --------EIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDT-AYKVTEQILQAHPEIKAIWCGNDA 201 (290)
T ss_dssp --------CEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHH-HHHHHHHHHHHCTTCCEEEESSHH
T ss_pred --------ceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHH-HHHHHHHHHHhCCCCcEEEECCch
Confidence 7 77776432 1 1223377888888 776532 11111111 1112222 2221 111 1122
Q ss_pred HHHHHHHHHhhCCC-CEEEECCCccccccCCC-CCC-CCeee-ehHHHHHHHHHHHHHh
Q 017159 274 LLRIGIQLLLVRAV-NAVIIGSDEMQGVLPKD-DPL-LKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 274 ~l~~~i~~L~~~ga-DaVILGCTElpll~~~~-~~~-~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
....+++.+.+.|. |.-|.|+...+...... .+. .+..| -+...+++.+++.+..
T Consensus 202 ~a~g~~~al~~~g~~dv~vig~d~~~~~~~~~~~p~~~lttv~~~~~~~g~~a~~~l~~ 260 (290)
T 2fn9_A 202 MALGAMKACEAAGRTDIYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQ 260 (290)
T ss_dssp HHHHHHHHHHHTTCTTCEEECCBCCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCeEEEEeCCCHHHHHHHhCCCcEEEEEecCHHHHHHHHHHHHHH
Confidence 23345556666675 88899998877542111 111 01223 3455666666666654
No 139
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=76.32 E-value=22 Score=32.74 Aligned_cols=159 Identities=13% Similarity=0.048 Sum_probs=79.2
Q ss_pred HHHHHcC--CcEEEEeCCCchh---hHHHHhccCCCCeecc---------------------------HHHHHHHHHH--
Q 017159 160 AFLEQAG--ARCIVMPCHISHA---WHGDVSEGCSIPFLHV---------------------------GECVAKELKE-- 205 (376)
Q Consensus 160 ~~L~~~G--ad~IVIaCNTAH~---~~d~L~~~~~vPvl~I---------------------------veat~~~~~~-- 205 (376)
+.|.+.+ +|.|++....... .++.+++ .++|++-+ ...+++++.+
T Consensus 55 ~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~ 133 (332)
T 2rjo_A 55 RALLQKTGGNLVLNVDPNDSADARVIVEACSK-AGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSM 133 (332)
T ss_dssp HHHHHHTTTCEEEEECCSSHHHHHHHHHHHHH-HTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHH-CCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHc
Confidence 4455667 9988886554432 2444433 24554421 3345666666
Q ss_pred hcCCCCcCCCCceEEEeecchh-----hchHHHHHHHHhc-CCceee--cCccccccchHHHHHH-Hhc-C-ChH----H
Q 017159 206 AKLKPLEAGSGVRIGVLATDAT-----LSAGFYQEKLQNQ-GFEVVL--PDKATMEHVIIPTIEA-LNH-R-DME----G 270 (376)
Q Consensus 206 ~g~k~~~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~-G~evv~--p~~~~q~~~l~~~ie~-lk~-G-~~~----~ 270 (376)
.|. +||++++.+.. .+..-|.+.++++ |+++.. ......+. -...++. +.. + ..+ .
T Consensus 134 ~G~--------~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~aI~~~ 204 (332)
T 2rjo_A 134 GGK--------GGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDFQVADWNSQK-AFPIMQAWMTRFNSKIKGVWAA 204 (332)
T ss_dssp TTC--------EEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHH-HHHHHHHHHHHHGGGEEEEEES
T ss_pred CCC--------CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEeeccCCCCHHH-HHHHHHHHHHhcCCCeeEEEEC
Confidence 454 49999986421 1223378889988 876542 11111110 1111222 222 1 111 1
Q ss_pred HHHHHHHHHHHHhhCCC--CEEEECCCccccccCC-CC-CCCCeeeehHHHHHHHHHHHHHh
Q 017159 271 ARNLLRIGIQLLLVRAV--NAVIIGSDEMQGVLPK-DD-PLLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 271 a~~~l~~~i~~L~~~ga--DaVILGCTElpll~~~-~~-~~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
.......+++.+.+.|. |.-|+|+...+..... .. +....+--+...+++.+++.+..
T Consensus 205 nd~~A~g~~~al~~~G~~~di~vvg~D~~~~~~~~~~~~~~lttv~~~~~~~g~~av~~l~~ 266 (332)
T 2rjo_A 205 NDDMALGAIEALRAEGLAGQIPVTGMDGTQPGLVAIKSGELVASVDWDPFWLGGIGLSMGLQ 266 (332)
T ss_dssp SHHHHHHHHHHHHHTTCBTTBCEECSBCCHHHHHHHHTTSCCBEEECCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHcCCCCCCEEEeecCCHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHHH
Confidence 12233345566666675 8889999888854211 01 11112223455566666665544
No 140
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=76.17 E-value=15 Score=33.44 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=47.3
Q ss_pred HHHHHHcCCcEEEEeCCCchh---hHHHHhccCCCCeecc--------------------HHHHHHHHHHh--cCCCCcC
Q 017159 159 RAFLEQAGARCIVMPCHISHA---WHGDVSEGCSIPFLHV--------------------GECVAKELKEA--KLKPLEA 213 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~---~~d~L~~~~~vPvl~I--------------------veat~~~~~~~--g~k~~~~ 213 (376)
++.|.+.++|.|++....... .++.+++ .++|++.+ ...+++++.+. |.
T Consensus 50 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~~~G~----- 123 (313)
T 2h3h_A 50 LESFIAEGVNGIAIAPSDPTAVIPTIKKALE-MGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLGGK----- 123 (313)
T ss_dssp HHHHHHTTCSEEEECCSSTTTTHHHHHHHHH-TTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHHTSC-----
T ss_pred HHHHHHcCCCEEEEeCCChHHHHHHHHHHHH-CCCeEEEeCCCCCCcceeEEECcCHHHHHHHHHHHHHHHcCCC-----
Confidence 345666899999886544332 3455443 35665532 23456667666 54
Q ss_pred CCCceEEEeecchh-----hchHHHHHHHHhcCCcee
Q 017159 214 GSGVRIGVLATDAT-----LSAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 214 ~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~evv 245 (376)
+||++++.+.. .+..-|.+.+++.|+++.
T Consensus 124 ---~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 157 (313)
T 2h3h_A 124 ---GKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIV 157 (313)
T ss_dssp ---SEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEE
T ss_pred ---CEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEE
Confidence 39999986521 122337888888898764
No 141
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=76.07 E-value=8.3 Score=36.60 Aligned_cols=80 Identities=8% Similarity=-0.014 Sum_probs=46.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCce
Q 017159 158 KRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~r 218 (376)
.+++|.+.|+++|+=+.++.... ...+-+..++|+|+. ..++++.++..|.+ +
T Consensus 59 ~~~~l~~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~~~~~~~~~~~~~~p~~~~a~~~~~~~~g~~--------~ 130 (384)
T 3saj_A 59 RFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQEALISIIDHYKWQ--------T 130 (384)
T ss_dssp HHHHHHHTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECSCCCSSCCTTEEECSCCCHHHHHHHHHHTTCC--------E
T ss_pred HHHHHHhcCeEEEECCCCHHHHHHHHHHhccCCCCeEeccccCcCccCceEEecccHHHHHHHHHHHCCCc--------E
Confidence 34456566888877666553332 444545556776652 44556666555544 8
Q ss_pred EEEeecchhhch---HHHHHHHHhcCCceee
Q 017159 219 IGVLATDATLSA---GFYQEKLQNQGFEVVL 246 (376)
Q Consensus 219 VGlLaT~~T~~s---~~Y~~~L~~~G~evv~ 246 (376)
|+++.-. ..-. ..+.+.+++.|.+++.
T Consensus 131 v~ii~d~-~~g~~~~~~~~~~~~~~g~~v~~ 160 (384)
T 3saj_A 131 FVYIYDA-DRGLSVLQRVLDTAAEKNWQVTA 160 (384)
T ss_dssp EEEEECS-TTCSHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEeC-chhHHHHHHHHHHhhhcCceEEE
Confidence 8888733 2222 2355666777877653
No 142
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=74.53 E-value=2.7 Score=39.63 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH----HHHHHHHHhcC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE----CVAKELKEAKL 208 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive----at~~~~~~~g~ 208 (376)
+.+.++.++++|||+|++.|-..-..+.++.+.+++|+ +++. .+.+++.+.|+
T Consensus 170 ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~~P~-n~~~~~~~~~~~eL~~lGv 226 (275)
T 2ze3_A 170 TVRRGQAYADAGADGIFVPLALQSQDIRALADALRVPL-NVMAFPGSPVPRALLDAGA 226 (275)
T ss_dssp HHHHHHHHHHTTCSEEECTTCCCHHHHHHHHHHCSSCE-EEECCTTSCCHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhcCCCE-EEecCCCCCCHHHHHHcCC
Confidence 44556678899999999999653355788888888886 3321 12455555554
No 143
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=73.30 E-value=67 Score=33.50 Aligned_cols=80 Identities=8% Similarity=0.011 Sum_probs=50.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeec------------------cHHHHHHHHHHhcCCCCcCCCCce
Q 017159 158 KRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLH------------------VGECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~------------------Iveat~~~~~~~g~k~~~~~~~~r 218 (376)
.+..|.+.|+.+|+=|-++.... ...+.+..++|.|+ ...+.++.++..|.+ +
T Consensus 52 ~~~~l~~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~~~~~~~~~~~~r~~p~~~~a~~~l~~~~gw~--------~ 123 (823)
T 3kg2_A 52 AFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWD--------K 123 (823)
T ss_dssp HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCSSCCSSEEECSCCCHHHHHHHHHHTTCS--------E
T ss_pred HHHHHHhcCcEEEEcCCChhHHHHHHHHhhcCCCceeecccCCCCCCceEEEeCCCHHHHHHHHHHHCCCC--------E
Confidence 34556667898887666554333 45555566677664 345666666666654 9
Q ss_pred EEEeecchhhch---HHHHHHHHhcCCceee
Q 017159 219 IGVLATDATLSA---GFYQEKLQNQGFEVVL 246 (376)
Q Consensus 219 VGlLaT~~T~~s---~~Y~~~L~~~G~evv~ 246 (376)
|+++. +..--. ..+.+.+++.|+++..
T Consensus 124 v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~ 153 (823)
T 3kg2_A 124 FAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 153 (823)
T ss_dssp EEEEE-CGGGCTHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEE-eCChhHHHHHHHHHHhhccCCceEE
Confidence 99998 433222 2356677888988764
No 144
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=72.71 E-value=16 Score=34.76 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH--------H--HHHHHHh-cCCCCcCCCCceEEEee
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC--------V--AKELKEA-KLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea--------t--~~~~~~~-g~k~~~~~~~~rVGlLa 223 (376)
+.+.++-|.+.|+|+|||=... |-.++++.+..++||||..+- . .-.+.+. |- -.+.+|+++|
T Consensus 81 l~DTarvLs~~~~D~iviR~~~-~~~~~~la~~~~vPVINagdg~~~HPtQaLaDl~Ti~e~~g~-----l~glkva~vG 154 (304)
T 3r7f_A 81 LYDTIRTLESIGVDVCVIRHSE-DEYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEFNT-----FKGLTVSIHG 154 (304)
T ss_dssp HHHHHHHHHHHTCCEEEEECSS-TTCHHHHHHHCSSCEEESCCTTSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEES
T ss_pred HHHHHHHHHHhcCCEEEEecCC-hhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCC-----CCCCEEEEEc
Confidence 5556678999999999999885 667888888899999998641 1 1123332 21 2356999999
Q ss_pred cch---hhchHHHHHHHHhcCCceeecCc
Q 017159 224 TDA---TLSAGFYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 224 T~~---T~~s~~Y~~~L~~~G~evv~p~~ 249 (376)
-.. +.. .+-..+...|+++.+-.+
T Consensus 155 D~~~~rva~--Sl~~~~~~~G~~v~~~~P 181 (304)
T 3r7f_A 155 DIKHSRVAR--SNAEVLTRLGARVLFSGP 181 (304)
T ss_dssp CCTTCHHHH--HHHHHHHHTTCEEEEESC
T ss_pred CCCCcchHH--HHHHHHHHcCCEEEEECC
Confidence 631 333 345567778988876544
No 145
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=72.25 E-value=25 Score=33.01 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=46.7
Q ss_pred HHHH-HHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc------------------------HHHHHHHHHHhcCCCCc
Q 017159 159 RAFL-EQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV------------------------GECVAKELKEAKLKPLE 212 (376)
Q Consensus 159 ~~~L-~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I------------------------veat~~~~~~~g~k~~~ 212 (376)
+++| .+.++++|+=+.++.... .-.+-+..++|+|+. ....++.++..|.
T Consensus 64 a~~Li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~---- 139 (371)
T 4f06_A 64 AQELIVKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEKSPYIVRTSFTMFQNTVPAAKVAKQKGA---- 139 (371)
T ss_dssp HHHHHHTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHhcCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhcccCCcceecccchhhhhhhhhhhhhhcCc----
Confidence 3444 445888877665554332 222333446666543 2334556666554
Q ss_pred CCCCceEEEeecchhhc---hHHHHHHHHhcCCceee
Q 017159 213 AGSGVRIGVLATDATLS---AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 213 ~~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~ 246 (376)
+||+++..+...- ...+++.+++.|.+++.
T Consensus 140 ----k~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~ 172 (371)
T 4f06_A 140 ----TKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVE 172 (371)
T ss_dssp ----CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ----eEEEEEcCCcccchhHHHHHHHHHHhcCCceEE
Confidence 4999998765432 23367788888988764
No 146
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=72.10 E-value=14 Score=35.39 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC----------c--hhhHHHHhccCCCCeeccH----HHHHHHHHHhcCCCCcCCCCce
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI----------S--HAWHGDVSEGCSIPFLHVG----ECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT----------A--H~~~d~L~~~~~vPvl~Iv----eat~~~~~~~g~k~~~~~~~~r 218 (376)
..+.++.|+++|+|+|-+.+-. . ..+..++++.+++||+... .+.++++.+.|. ..-
T Consensus 231 ~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~-------aD~ 303 (340)
T 3gr7_A 231 YVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGR-------ADL 303 (340)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTS-------CSE
T ss_pred HHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCC-------eeE
Confidence 3455678999999999886421 0 1236788888999998753 344555655551 114
Q ss_pred EEEeecchhhchHHHHHHHHhcCCceeec
Q 017159 219 IGVLATDATLSAGFYQEKLQNQGFEVVLP 247 (376)
Q Consensus 219 VGlLaT~~T~~s~~Y~~~L~~~G~evv~p 247 (376)
|+ +|+.....-.+..+..+..|.++..|
T Consensus 304 V~-iGR~~lanPdl~~ki~~~l~~~~~~~ 331 (340)
T 3gr7_A 304 VF-LGRELLRNPYWPYAAARELGAKISAP 331 (340)
T ss_dssp EE-ECHHHHHCTTHHHHHHHHTTCCCCCC
T ss_pred EE-ecHHHHhCchHHHHHHHHCCCCCCCC
Confidence 44 88877767777777777777665443
No 147
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=67.86 E-value=18 Score=34.69 Aligned_cols=85 Identities=14% Similarity=0.015 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc---------h----hhHHHHhccCCCCeeccH----HHHHHHHHHhcCCCCcCCCCc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHIS---------H----AWHGDVSEGCSIPFLHVG----ECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTA---------H----~~~d~L~~~~~vPvl~Iv----eat~~~~~~~g~k~~~~~~~~ 217 (376)
..+.++.|+++|+|+|-+.+... . .+..++++.+++||+... ...++++.+.|. ..
T Consensus 241 ~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~-------aD 313 (349)
T 3hgj_A 241 TLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGS-------AD 313 (349)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTS-------CS
T ss_pred HHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCC-------ce
Confidence 34566789999999998875210 1 136778888889988763 344555555541 11
Q ss_pred eEEEeecchhhchHHHHHHHHhcCCceeec
Q 017159 218 RIGVLATDATLSAGFYQEKLQNQGFEVVLP 247 (376)
Q Consensus 218 rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p 247 (376)
-|+ +|+..-..-.+..+..+..|.++..|
T Consensus 314 ~V~-iGR~~lanPdl~~k~~~~l~~~~~~~ 342 (349)
T 3hgj_A 314 LVL-LGRVLLRDPYFPLRAAKALGVAPEVP 342 (349)
T ss_dssp EEE-ESTHHHHCTTHHHHHHHHTTCCCCCC
T ss_pred EEE-ecHHHHhCchHHHHHHHHCCCCCCCc
Confidence 344 78777666666677666677665443
No 148
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=67.71 E-value=58 Score=30.57 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=42.1
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-HHHHh-ccCCCCeecc----------------------HHHHHHHHHHhcCCCCcCC
Q 017159 159 RAFLEQAGARCIVMPCHISHAW-HGDVS-EGCSIPFLHV----------------------GECVAKELKEAKLKPLEAG 214 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~-~d~L~-~~~~vPvl~I----------------------veat~~~~~~~g~k~~~~~ 214 (376)
++.|.+.|+++|+=|..+.... .-.+. +..++|+|.. .+.+++.+.+.|.|
T Consensus 49 ~~~l~~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~a~~a~~~g~k----- 123 (325)
T 2h4a_A 49 IAQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVR----- 123 (325)
T ss_dssp HHHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCSSCCCCTTEEECCCCHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCccccCCCCeEEEECCHHHHHHHHHHHHHHcCCC-----
Confidence 3455667787766665543321 22222 2245555542 23345556555554
Q ss_pred CCceEEEeecchhhchHH---HHHHHHhcCCcee
Q 017159 215 SGVRIGVLATDATLSAGF---YQEKLQNQGFEVV 245 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~s~~---Y~~~L~~~G~evv 245 (376)
||+||+.....-.++ |++.+++.|.+++
T Consensus 124 ---~vail~~~~~yG~~~~~~F~~~~~~~Gg~vv 154 (325)
T 2h4a_A 124 ---NPLVAMPQNDLGQRVGNAFNVRWQQLAGTDA 154 (325)
T ss_dssp ---SCEEEEESSHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ---eEEEEEcCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 788887755443333 5566666676654
No 149
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=67.54 E-value=28 Score=32.82 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=41.2
Q ss_pred HHHcCCcEEEEeCCCchhh-HHHHhccCCCCeecc------------------------HHHHHHHHHHhcCCCCcCCCC
Q 017159 162 LEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV------------------------GECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I------------------------veat~~~~~~~g~k~~~~~~~ 216 (376)
|.+.|+++|+=+.++.... ...+-+..++|+|+. ..+.++.++..|.+
T Consensus 67 l~~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~------- 139 (395)
T 3h6g_A 67 QLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWK------- 139 (395)
T ss_dssp HHHHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTCCCCSEEEEEECHHHHHHHHHHHHHHTTCS-------
T ss_pred hhhcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccccCceEEEecCCHHHHHHHHHHHHHHCCCe-------
Confidence 4456888777665554333 445555567776642 33445555554543
Q ss_pred ceEEEeecchhhch---HHHHHHHHhcCCceee
Q 017159 217 VRIGVLATDATLSA---GFYQEKLQNQGFEVVL 246 (376)
Q Consensus 217 ~rVGlLaT~~T~~s---~~Y~~~L~~~G~evv~ 246 (376)
+|+++.- ...-. ..+.+.+++.|.+++.
T Consensus 140 -~v~ii~d-~~~g~~~~~~~~~~~~~~g~~v~~ 170 (395)
T 3h6g_A 140 -TVTVVYD-DSTGLIRLQELIKAPSRYNLRLKI 170 (395)
T ss_dssp -EEEEEES-STHHHHHTHHHHTGGGTSSCEEEE
T ss_pred -EEEEEEE-ChhHHHHHHHHHHhhhcCCceEEE
Confidence 8998863 32211 1234445556777654
No 150
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=67.52 E-value=6.6 Score=37.19 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=45.7
Q ss_pred cCCcEEEEeCC--CchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcC
Q 017159 165 AGARCIVMPCH--ISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQG 241 (376)
Q Consensus 165 ~Gad~IVIaCN--TAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G 241 (376)
.++|+||+.-- -.|+.+.+.++ .++||++=+|...+.+.+ + .+.|||-||.| |--+.+....|++.|
T Consensus 65 ~~~d~vV~Spgi~~~~p~~~~a~~-~gi~v~~~~e~~~~~~~~-~--------~~~IaVTGTnGKTTTt~ll~~iL~~~g 134 (326)
T 3eag_A 65 FKADVYVIGNVAKRGMDVVEAILN-LGLPYISGPQWLSENVLH-H--------HWVLGVAGTHGKTTTASMLAWVLEYAG 134 (326)
T ss_dssp CCCSEEEECTTCCTTCHHHHHHHH-TTCCEEEHHHHHHHHTGG-G--------SEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCcCCCCHHHHHHHH-cCCcEEeHHHHHHHHHhc-C--------CCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 36898886432 23566666654 489999987765543221 1 13799999988 333456677888888
Q ss_pred Cce
Q 017159 242 FEV 244 (376)
Q Consensus 242 ~ev 244 (376)
..+
T Consensus 135 ~~~ 137 (326)
T 3eag_A 135 LAP 137 (326)
T ss_dssp CCC
T ss_pred CCc
Confidence 764
No 151
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=66.79 E-value=6.3 Score=37.39 Aligned_cols=109 Identities=10% Similarity=0.021 Sum_probs=47.4
Q ss_pred CCcccccccCC--eEEEEcCCChHHHHHHHHHHHHHhh-hCCCCCCCeEeecCCcc--hhHHhhhchhhhccccccCcch
Q 017159 73 KSPDSLLNQAN--TIGIIGGVSVSSTLNFLGKLVWYSA-KDAEECPPFVVCNDPAL--NEELFHASVHSLKSKTVQLDHI 147 (376)
Q Consensus 73 ~~~~~~~~~~k--~IGIIGGmGp~AT~~f~~kI~~~~~-~~dq~~~p~il~s~p~i--pd~l~~~s~~~~~~~~~~~~~~ 147 (376)
...+.|++.|| +||||| .|..+.. +.+.+...-. -.+-+...++-+-+++- ....... ++. . ..-.+
T Consensus 14 ~~~~~~~~~MkkirvgiIG-~G~ig~~-H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~-~g~----~-~~y~d 85 (393)
T 4fb5_A 14 GTENLYFQSMKPLGIGLIG-TGYMGKC-HALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE-FGF----E-KATAD 85 (393)
T ss_dssp ----------CCCEEEEEC-CSHHHHH-HHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH-HTC----S-EEESC
T ss_pred CccCccccCCCCccEEEEc-CCHHHHH-HHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH-hCC----C-eecCC
Confidence 34566888887 589997 7877652 3333322211 13334556665554432 1111110 110 0 00111
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---HHHHhccC----CCCeeccHHHH
Q 017159 148 RGAVSQNLRHKRAFLEQAGARCIVMPCHISHAW---HGDVSEGC----SIPFLHVGECV 199 (376)
Q Consensus 148 ~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~---~d~L~~~~----~vPvl~Iveat 199 (376)
+++ .|++..+|+|+|++-+...+ ...+++.. ..|+-.-++++
T Consensus 86 ~~e----------ll~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea 134 (393)
T 4fb5_A 86 WRA----------LIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADA 134 (393)
T ss_dssp HHH----------HHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHH
T ss_pred HHH----------HhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHH
Confidence 233 25567899999998654333 55566543 45765555543
No 152
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=66.62 E-value=26 Score=32.71 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh-----hHHHHhccCCCCee---c-cHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHA-----WHGDVSEGCSIPFL---H-VGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~-----~~d~L~~~~~vPvl---~-Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
.+.++..++.||++|-+.+-..+. .+.++++.+++||+ . +-+..+.+++..|.. .|.|.++.-
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~GAD--------~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPALRKDFLFDPYQVYEARSWGAD--------CILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTTCS--------EEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcCCC--------EEEEccccc
Confidence 445567888999999776643322 36788888999984 1 222346667777764 677666533
Q ss_pred hhc-hHHHHHHHHhcCCceee
Q 017159 227 TLS-AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 227 T~~-s~~Y~~~L~~~G~evv~ 246 (376)
.-. -..+-+...+.|+++++
T Consensus 154 ~~~~l~~l~~~a~~lGl~~lv 174 (272)
T 3tsm_A 154 DDDLAKELEDTAFALGMDALI 174 (272)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCeEEE
Confidence 211 11233345556887664
No 153
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=65.36 E-value=7.2 Score=37.03 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCcEEEEeC-CCchhhHHHHhccCC--CCeecc-HH---HHHHHHHHhcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPC-HISHAWHGDVSEGCS--IPFLHV-GE---CVAKELKEAKLK 209 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaC-NTAH~~~d~L~~~~~--vPvl~I-ve---at~~~~~~~g~k 209 (376)
+.+.++.++++|||+|++.| -.....+.++.+.++ +|++-. .+ ...+++.+.|++
T Consensus 172 ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~ 233 (295)
T 1s2w_A 172 ALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVS 233 (295)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSSSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCc
Confidence 44455668899999999988 332344677777766 887632 21 346778888874
No 154
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=65.09 E-value=13 Score=32.48 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=46.9
Q ss_pred cCC-eEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 81 QAN-TIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 81 ~~k-~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
+|+ ++||| ||..|-....++..+....-+- ..++-+.|-.. .+ +.+.++ +
T Consensus 3 ~m~p~V~Ii--mgS~SD~~v~~~a~~~l~~~gi-~~ev~V~SaHR--------------------tp--~~l~~~----~ 53 (166)
T 3oow_A 3 AMSVQVGVI--MGSKSDWSTMKECCDILDNLGI-GYECEVVSAHR--------------------TP--DKMFDY----A 53 (166)
T ss_dssp --CEEEEEE--ESSGGGHHHHHHHHHHHHHTTC-EEEEEECCTTT--------------------CH--HHHHHH----H
T ss_pred CCCCeEEEE--ECcHHhHHHHHHHHHHHHHcCC-CEEEEEEcCcC--------------------CH--HHHHHH----H
Confidence 354 68888 6777777778887776654332 11222222111 11 333333 3
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+.+++.|+++|+....-+-..---+...+..|||++
T Consensus 54 ~~~~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgV 89 (166)
T 3oow_A 54 ETAKERGLKVIIAGAGGAAHLPGMVAAKTTLPVLGV 89 (166)
T ss_dssp HHTTTTTCCEEEEEECSSCCHHHHHHHTCSSCEEEE
T ss_pred HHHHhCCCcEEEEECCcchhhHHHHHhccCCCEEEe
Confidence 456677888665444433333456666788999886
No 155
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=64.93 E-value=75 Score=31.22 Aligned_cols=188 Identities=7% Similarity=-0.019 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh-------HH----------HHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW-------HG----------DVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~-------~d----------~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~ 217 (376)
..+.++...++|||++=.-..++... |. ++.+...+|.=. .....++.++.|
T Consensus 46 A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~-~~~L~~~~~~~G---------- 114 (385)
T 1vli_A 46 AFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEW-ILPLLDYCREKQ---------- 114 (385)
T ss_dssp HHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGG-HHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHH-HHHHHHHHHHcC----------
Confidence 44555666779999997765555331 11 333444455333 355566666654
Q ss_pred eEEEeecchhhchHHHHHHHHhcCCcee-ecCccccccchHHHHHHHhc-CCh----H--HHHHHHHHHHHHHhhCCC-C
Q 017159 218 RIGVLATDATLSAGFYQEKLQNQGFEVV-LPDKATMEHVIIPTIEALNH-RDM----E--GARNLLRIGIQLLLVRAV-N 288 (376)
Q Consensus 218 rVGlLaT~~T~~s~~Y~~~L~~~G~evv-~p~~~~q~~~l~~~ie~lk~-G~~----~--~a~~~l~~~i~~L~~~ga-D 288 (376)
+-+++|++...+ -+.|+++|++++ +++.+.++ .++++.+.+ |.. . .+.+.+..+++.+...|. +
T Consensus 115 -i~~~stpfD~~s---vd~l~~~~vd~~KIgS~~~~N---~pLL~~va~~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~ 187 (385)
T 1vli_A 115 -VIFLSTVCDEGS---ADLLQSTSPSAFKIASYEINH---LPLLKYVARLNRPMIFSTAGAEISDVHEAWRTIRAEGNNQ 187 (385)
T ss_dssp -CEEECBCCSHHH---HHHHHTTCCSCEEECGGGTTC---HHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHTTTCCC
T ss_pred -CcEEEccCCHHH---HHHHHhcCCCEEEECcccccC---HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHCCCCc
Confidence 568888876554 466788888777 44445443 355666532 321 0 135667777888887787 7
Q ss_pred EEEECC-CccccccCCCC---------CC-CCeeeehH-----HHHHHHHHHHHHhccccccccccCCCCCCCCcccchh
Q 017159 289 AVIIGS-DEMQGVLPKDD---------PL-LKKCIDPM-----DALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSA 352 (376)
Q Consensus 289 aVILGC-TElpll~~~~~---------~~-~vpvIDp~-----~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~ 352 (376)
.++|=| +.||--.+..+ .. .+||.||- ..++.+++ +.+..-..-++.....-.++-..+|=.
T Consensus 188 iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG~SdHt~G~~~~~~AAv--AlGA~iIEkHftldra~~G~D~~~SL~ 265 (385)
T 1vli_A 188 IAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTEAPCAAV--RLGAKLIEKHFTIDKNLPGADHSFALN 265 (385)
T ss_dssp EEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECCSSSSHHHHHHH--HTTCSEEEEEBCSCTTSSCSSCTTSBC
T ss_pred EEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEEeCCCCCCchHHHHHHH--HcCCCEEEeCCCccccCCCCchhhhCC
Confidence 777766 45664221111 12 46777653 23333333 333321111222333333455566666
Q ss_pred HHHHHHHHHH
Q 017159 353 LLQFKQLWKI 362 (376)
Q Consensus 353 ~~~~~~~~~~ 362 (376)
+.+|+++.+.
T Consensus 266 P~ef~~lv~~ 275 (385)
T 1vli_A 266 PDELKEMVDG 275 (385)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777766543
No 156
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=64.75 E-value=79 Score=28.74 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=73.3
Q ss_pred HHHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc---------------------HHHHHHHHHH---hcCCCC
Q 017159 159 RAFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV---------------------GECVAKELKE---AKLKPL 211 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I---------------------veat~~~~~~---~g~k~~ 211 (376)
++.|...|+|.|++...... ..++.+++ .++|++.+ ....++++.+ .|.
T Consensus 53 i~~li~~~vdgiii~~~~~~~~~~~~~~a~~-~gipvV~~d~~~~~~~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~--- 128 (316)
T 1tjy_A 53 VNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ-RGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEK--- 128 (316)
T ss_dssp HHHHHHTTCSEEEECCSSSSTTHHHHHHHHH-TTCEEEEESSCCCGGGCSEEEESCCHHHHHHHHHHHHHHHHCSSS---
T ss_pred HHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH-CcCEEEEecCCCCCCCceEEEecCCHHHHHHHHHHHHHHHcCCCC---
Confidence 34566789999887655433 33555443 24443321 2334555555 333
Q ss_pred cCCCCceEEEeecchh-----hchHHHHHHHHhc--CCceeec--CccccccchHHHHHH-Hhc-CChHH----HHHHHH
Q 017159 212 EAGSGVRIGVLATDAT-----LSAGFYQEKLQNQ--GFEVVLP--DKATMEHVIIPTIEA-LNH-RDMEG----ARNLLR 276 (376)
Q Consensus 212 ~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~--G~evv~p--~~~~q~~~l~~~ie~-lk~-G~~~~----a~~~l~ 276 (376)
++|++++...+ .+..-|.+.++++ +++++.. .....+. -...++. +.. .+++. ......
T Consensus 129 -----~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~aI~~~nD~~A~ 202 (316)
T 1tjy_A 129 -----AKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATK-SLQTAEGIIKAYPDLDAIIAPDANALP 202 (316)
T ss_dssp -----EEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHH-HHHHHHHHHHHCSSCCEEEECSTTHHH
T ss_pred -----CEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEeccCCCCHHH-HHHHHHHHHHhCCCCCEEEECCCccHH
Confidence 49999974322 2233477778766 4444321 1111110 1111222 221 11110 011223
Q ss_pred HHHHHHhhCC-CCEEEECCCccccccCCCC-C-CCCeeeehHHHHHHHHHHHHHh
Q 017159 277 IGIQLLLVRA-VNAVIIGSDEMQGVLPKDD-P-LLKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 277 ~~i~~L~~~g-aDaVILGCTElpll~~~~~-~-~~vpvIDp~~~lA~a~v~~a~~ 328 (376)
.+++.+.+.| -|..|.|....+...+... + ..-.+.-+...+++.+++.+..
T Consensus 203 g~~~al~~~G~~dv~VvG~D~~~~~~~~i~~g~l~ttv~~~~~~~g~~a~~~l~~ 257 (316)
T 1tjy_A 203 AAAQAAENLKRNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANA 257 (316)
T ss_dssp HHHHHHHHTTCCSCEEEEBCCHHHHHHHHHHTSCSEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEEeCCCHHHHHHHHCCCccEEEecCHHHHHHHHHHHHHH
Confidence 3344454445 4678888877653221111 1 1113333446677777766654
No 157
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=64.30 E-value=28 Score=34.33 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=44.2
Q ss_pred CcEEEEeCCC--chhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcCCc
Q 017159 167 ARCIVMPCHI--SHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 167 ad~IVIaCNT--AH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G~e 243 (376)
+|.||+.--- .|+.+.+.++ .++||++-++...+.. ..+.|||-||.| |--+.+....|+..|..
T Consensus 73 ~d~vv~spgi~~~~p~~~~a~~-~gi~v~~~~e~~~~~~-----------~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~ 140 (451)
T 3lk7_A 73 FCYMIKNPGIPYNNPMVKKALE-KQIPVLTEVELAYLVS-----------ESQLIGITGSNGKTTTTTMIAEVLNAGGQR 140 (451)
T ss_dssp EEEEEECTTSCTTSHHHHHHHH-TTCCEECHHHHHHHHC-----------CSEEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEECCcCCCCChhHHHHHH-CCCcEEeHHHHHHHhc-----------CCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 8888775332 2555555544 4899999877654321 124799999987 33445667778888876
Q ss_pred eee
Q 017159 244 VVL 246 (376)
Q Consensus 244 vv~ 246 (376)
+.+
T Consensus 141 ~~~ 143 (451)
T 3lk7_A 141 GLL 143 (451)
T ss_dssp EEE
T ss_pred EEE
Confidence 644
No 158
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=62.88 E-value=6.6 Score=37.09 Aligned_cols=118 Identities=13% Similarity=0.066 Sum_probs=51.1
Q ss_pred cccccCCCcccccccCCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcch--hHHhhhchhhhccccccC
Q 017159 67 ASLLRSKSPDSLLNQANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALN--EELFHASVHSLKSKTVQL 144 (376)
Q Consensus 67 ~~~~~~~~~~~~~~~~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ip--d~l~~~s~~~~~~~~~~~ 144 (376)
+|+......+.+..+|-+||||| .|..+...+...+.+ .....++-+.+++.. ..+... +.. ..-.
T Consensus 8 ~~~~~~~~~n~~~~~mirigiIG-~G~ig~~~~~~~~~~------~~~~~lvav~d~~~~~a~~~a~~-~g~----~~~y 75 (350)
T 4had_A 8 SSGVDLGTENLYFQSMLRFGIIS-TAKIGRDNVVPAIQD------AENCVVTAIASRDLTRAREMADR-FSV----PHAF 75 (350)
T ss_dssp --------------CCEEEEEES-CCHHHHHTHHHHHHH------CSSEEEEEEECSSHHHHHHHHHH-HTC----SEEE
T ss_pred ccccccCCccccccCccEEEEEc-ChHHHHHHHHHHHHh------CCCeEEEEEECCCHHHHHHHHHH-cCC----Ceee
Confidence 34445555667788888999996 787776444443322 123445544444321 111100 110 0001
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCcEEEEeCCCchhh---HHHHhccC----CCCeecc---HHHHHHHHHHhc
Q 017159 145 DHIRGAVSQNLRHKRAFLEQAGARCIVMPCHISHAW---HGDVSEGC----SIPFLHV---GECVAKELKEAK 207 (376)
Q Consensus 145 ~~~~~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~---~d~L~~~~----~vPvl~I---veat~~~~~~~g 207 (376)
+ +++++ |++..+|+|+|++-+...+ ...+++.. ..|+-.- .+..++.+++.|
T Consensus 76 ~-d~~el----------l~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~ 137 (350)
T 4had_A 76 G-SYEEM----------LASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNK 137 (350)
T ss_dssp S-SHHHH----------HHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHT
T ss_pred C-CHHHH----------hcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcC
Confidence 1 12332 4567899999998764333 45565542 3455322 234455555554
No 159
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=62.18 E-value=32 Score=31.01 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+.+.++..++.|+.+|-+ ++ --.+.++++.+++|++++
T Consensus 38 ~~~~A~a~~~~Ga~~i~~--~~-~~~i~~ir~~v~~Pvig~ 75 (229)
T 3q58_A 38 VAAMAQAAASAGAVAVRI--EG-IENLRTVRPHLSVPIIGI 75 (229)
T ss_dssp HHHHHHHHHHTTCSEEEE--ES-HHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHHCCCcEEEE--CC-HHHHHHHHHhcCCCEEEE
Confidence 455567788999999876 33 234889999999999853
No 160
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=62.00 E-value=83 Score=28.38 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHHcCCcEEEEeCCCchhh---HHHHhccCCCCeecc---------------------HHHHHHHHHH-------hcC
Q 017159 160 AFLEQAGARCIVMPCHISHAW---HGDVSEGCSIPFLHV---------------------GECVAKELKE-------AKL 208 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~---~d~L~~~~~vPvl~I---------------------veat~~~~~~-------~g~ 208 (376)
+.+.+.++|.|++........ ++.+++. ++|++.+ ...+++++.+ .|.
T Consensus 53 ~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~-giPvV~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~ 131 (330)
T 3uug_A 53 ENMVTKGVKVLVIASIDGTTLSDVLKQAGEQ-GIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGP 131 (330)
T ss_dssp HHHHHHTCSEEEECCSSGGGGHHHHHHHHHT-TCEEEEESSCCCSCTTCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCC
T ss_pred HHHHHcCCCEEEEEcCCchhHHHHHHHHHHC-CCCEEEECCCCCCCCceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCc
Confidence 445667899988866543332 4444432 4444322 3345666666 343
Q ss_pred CCCcCCCCceEEEeecchhh-----chHHHHHHHHhc
Q 017159 209 KPLEAGSGVRIGVLATDATL-----SAGFYQEKLQNQ 240 (376)
Q Consensus 209 k~~~~~~~~rVGlLaT~~T~-----~s~~Y~~~L~~~ 240 (376)
++|++++.+... +..-|.+.++++
T Consensus 132 --------~~i~~i~g~~~~~~~~~R~~Gf~~al~~~ 160 (330)
T 3uug_A 132 --------FNIELFGGSPDDNNAFFFYDGAMSVLKPY 160 (330)
T ss_dssp --------EEEEECBCCTTCHHHHHHHHHHHHHHHHH
T ss_pred --------eEEEEEECCCCCchHHHHHHHHHHHHHhc
Confidence 389999653321 123377778776
No 161
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=61.93 E-value=19 Score=31.82 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=47.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHH
Q 017159 84 TIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLE 163 (376)
Q Consensus 84 ~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~ 163 (376)
.+||| ||..|-...+++..+...+-+-. .++-+.|.-..| +.+.+ .++..+
T Consensus 24 ~V~Ii--mGS~SD~~v~~~a~~~L~~~gI~-~e~~V~SAHRtp----------------------~~l~~----~~~~a~ 74 (181)
T 4b4k_A 24 LVGVI--MGSTSDWETMKYACDILDELNIP-YEKKVVSAHRTP----------------------DYMFE----YAETAR 74 (181)
T ss_dssp SEEEE--ESSGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTSH----------------------HHHHH----HHHHTT
T ss_pred cEEEE--ECCHhHHHHHHHHHHHHHHcCCC-eeEEEEccccCh----------------------HHHHH----HHHHHH
Confidence 48888 77777777788877766553321 122222322111 33333 334466
Q ss_pred HcCCcEEE-EeCCCchhhHHHHhccCCCCeecc
Q 017159 164 QAGARCIV-MPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 164 ~~Gad~IV-IaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
..|+++|+ .|-..+| .---+...+.+|||++
T Consensus 75 ~~g~~ViIa~AG~aah-LpGvvAa~T~~PVIGV 106 (181)
T 4b4k_A 75 ERGLKVIIAGAGGAAH-LPGMVAAKTNLPVIGV 106 (181)
T ss_dssp TTTCCEEEEEECSSCC-HHHHHHTTCCSCEEEE
T ss_pred hcCceEEEEecccccc-chhhHHhcCCCCEEEE
Confidence 77988664 4444444 3456677788899886
No 162
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=61.58 E-value=46 Score=31.52 Aligned_cols=77 Identities=9% Similarity=0.074 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCcEEEEe-CCCc---hhhHHHHhccCCCCeecc---------------------------HHHHHHHH
Q 017159 155 LRHKRAFLEQAGARCIVMP-CHIS---HAWHGDVSEGCSIPFLHV---------------------------GECVAKEL 203 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIa-CNTA---H~~~d~L~~~~~vPvl~I---------------------------veat~~~~ 203 (376)
+...++.|...|+.+|+.+ +... ..++..+-...++|+|+. ..+.++-+
T Consensus 52 ~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll 131 (364)
T 3qel_B 52 ITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIM 131 (364)
T ss_dssp HHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHH
Confidence 4555667777789888754 4321 112566666667777753 23455555
Q ss_pred HHhcCCCCcCCCCceEEEeecchhhchHHHHHHHHhc
Q 017159 204 KEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKLQNQ 240 (376)
Q Consensus 204 ~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L~~~ 240 (376)
+..|.+ +||++.+++ -....+++.+++.
T Consensus 132 ~~fgW~--------~V~iI~~d~-~g~~~~~~~l~~~ 159 (364)
T 3qel_B 132 EEYDWY--------IFSIVTTYF-PGYQDFVNKIRST 159 (364)
T ss_dssp HHTTCC--------EEEEEEESC-TTHHHHHHHHHHH
T ss_pred HHCCCe--------EEEEEEeCC-ccHHHHHHHHHHH
Confidence 555654 999999985 2223356666665
No 163
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=61.43 E-value=56 Score=30.02 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=47.7
Q ss_pred HHHHHcCCcEEEEeCCCchhh--HHHHhccCCCCeecc----------------------HHHHHHHHHHhcCCCCcCCC
Q 017159 160 AFLEQAGARCIVMPCHISHAW--HGDVSEGCSIPFLHV----------------------GECVAKELKEAKLKPLEAGS 215 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl~I----------------------veat~~~~~~~g~k~~~~~~ 215 (376)
+.+.+.|+++|+=|..+.... ...+.+.-.+|++.. ....++.+.+.|.|
T Consensus 52 ~~~~~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k------ 125 (327)
T 3ckm_A 52 AQAKQAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVR------ 125 (327)
T ss_dssp HHHHHTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTTCCCCTTEEECCCCHHHHHHHHHHHHHHTTCC------
T ss_pred HHHHHcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcccccCCCeEEEecChHHHHHHHHHHHHhcCCe------
Confidence 456778999887765543221 333344444555432 34456667666654
Q ss_pred CceEEEeecchhhchH---HHHHHHHhcCCceee
Q 017159 216 GVRIGVLATDATLSAG---FYQEKLQNQGFEVVL 246 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~---~Y~~~L~~~G~evv~ 246 (376)
+++++..+...-.+ .|++.+++.|.+++.
T Consensus 126 --~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~ 157 (327)
T 3ckm_A 126 --NPLVAMPQNDLGQRVGNAFNVRWQQLAGTDAN 157 (327)
T ss_dssp --SCEEEEESSHHHHHHHHHHHHHHHHHHSSCCE
T ss_pred --eEEEEecCChHHHHHHHHHHHHHHHCCCeEEE
Confidence 89999876654433 366777888877763
No 164
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=60.05 E-value=1.1e+02 Score=28.23 Aligned_cols=79 Identities=10% Similarity=0.037 Sum_probs=42.6
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccC-CCCeeccH-----------------HH---H---HHHHHHhcCCCCcCC
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGC-SIPFLHVG-----------------EC---V---AKELKEAKLKPLEAG 214 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~-~vPvl~Iv-----------------ea---t---~~~~~~~g~k~~~~~ 214 (376)
++.|.+.|+|.|++........+.++.+.. ++||+.+- +. + +.++.+.|+
T Consensus 55 l~~l~~~~~dgIi~~~~~~~~~~~~~a~~~p~~p~v~id~~~~~~~~~~~v~~d~~~~~~lag~~a~~l~~~Gh------ 128 (318)
T 2fqx_A 55 LSAFADENMGLVVACGSFLVEAVIETSARFPKQKFLVIDAVVQDRDNVVSAVFGQNEGSFLVGVAAALKAKEAG------ 128 (318)
T ss_dssp HHHHHHTTCSEEEEESTTTHHHHHHHHHHCTTSCEEEESSCCCSCTTEEEEEECHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHcCCCEEEECChhHHHHHHHHHHHCCCCEEEEEcCccCCCCCEEEEEechHHHHHHHHHHHHHHhccCC------
Confidence 345677899999987643322244443332 56655431 00 1 234445543
Q ss_pred CCceEEEeecch--hhc--hHHHHHHHHhcCCce
Q 017159 215 SGVRIGVLATDA--TLS--AGFYQEKLQNQGFEV 244 (376)
Q Consensus 215 ~~~rVGlLaT~~--T~~--s~~Y~~~L~~~G~ev 244 (376)
.+|||+++... +.. ..-|.+.+++.|.++
T Consensus 129 -~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~ 161 (318)
T 2fqx_A 129 -KSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDI 161 (318)
T ss_dssp -CCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTC
T ss_pred -CcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCC
Confidence 03899998532 111 222777788877643
No 165
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=59.90 E-value=48 Score=31.12 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=40.4
Q ss_pred HHHHHcCCcEEEEeCCC-chh-hHHHHhccCCCCeec-------------------------cHHHHHHHHHHhcCCCCc
Q 017159 160 AFLEQAGARCIVMPCHI-SHA-WHGDVSEGCSIPFLH-------------------------VGECVAKELKEAKLKPLE 212 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNT-AH~-~~d~L~~~~~vPvl~-------------------------Iveat~~~~~~~g~k~~~ 212 (376)
..|.+.|+++|+=|.++ ... ....+-+..++|+|+ ...+.++.++..|.+
T Consensus 64 ~~l~~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~--- 140 (393)
T 3om0_A 64 CQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYP--- 140 (393)
T ss_dssp HHHGGGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCCCC----CCSCCEESSCCHHHHHHHHHHHHHHTTSC---
T ss_pred HHHHhcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCcCccccccccceEEecCCHHHHHHHHHHHHHhCCCc---
Confidence 34445678877777666 232 333444444455442 234455556555554
Q ss_pred CCCCceEEEeecchhhchHHHHHH---HHhcCCcee
Q 017159 213 AGSGVRIGVLATDATLSAGFYQEK---LQNQGFEVV 245 (376)
Q Consensus 213 ~~~~~rVGlLaT~~T~~s~~Y~~~---L~~~G~evv 245 (376)
+|+++..+...-.+ .++. +.+.|.++.
T Consensus 141 -----~vaii~~~~~~g~~-l~~~~~~~~~~g~~v~ 170 (393)
T 3om0_A 141 -----SASLICAKAECLLR-LEELVRGFLISKETLS 170 (393)
T ss_dssp -----CEEEEESSTTHHHH-THHHHHHHHHSSSCEE
T ss_pred -----EEEEEEeCchHHHH-HHHHHHhhhccCCeEE
Confidence 89999876543222 2333 334566654
No 166
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=59.42 E-value=61 Score=31.95 Aligned_cols=42 Identities=7% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecchhhc---hHHHHHHHHhcCCceee
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDATLS---AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~ 246 (376)
.+.++.++..|.+ +||++.++...- ...+++.+++.|+.+..
T Consensus 174 ~a~~~ll~~fgw~--------~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~ 218 (479)
T 3sm9_A 174 KAMAEILRFFNWT--------YVSTVASEGDYGETGIEAFEQEARLRNISIAT 218 (479)
T ss_dssp HHHHHHHHHTTCC--------EEEEEEESSHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHCCCe--------EEEEEEecchhhHHHHHHHHHHHHHCCceEEE
Confidence 3456666665654 999999865432 23366778888988753
No 167
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=59.23 E-value=1.1e+02 Score=27.98 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-----------------------------HHHHHHHHHH
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-----------------------------GECVAKELKE 205 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-----------------------------veat~~~~~~ 205 (376)
+...++.|.+.++|+|+ +..|. ......+...++||+-. ++...+.+++
T Consensus 58 ~~~~~~~l~~~~~DlIi-ai~t~-aa~a~~~~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~~~~~~~~l~l~~~ 135 (302)
T 3lkv_A 58 AVQIARQFVGENPDVLV-GIATP-TAQALVSATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKE 135 (302)
T ss_dssp HHHHHHHHHTTCCSEEE-EESHH-HHHHHHHHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEE-EcCCH-HHHHHHhhcCCCCeEEEecCCcchhhhcccccCCCCcEEEEECCcCHHHHHHHHHH
Confidence 34456778889999875 33332 12222333446776521 2445555555
Q ss_pred hcCCCCcCCCCceEEEeecchhhc----hHHHHHHHHhcCCceeecC
Q 017159 206 AKLKPLEAGSGVRIGVLATDATLS----AGFYQEKLQNQGFEVVLPD 248 (376)
Q Consensus 206 ~g~k~~~~~~~~rVGlLaT~~T~~----s~~Y~~~L~~~G~evv~p~ 248 (376)
.. +..++||++..+..-. ...+++.+.+.|++++...
T Consensus 136 l~------P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~ 176 (302)
T 3lkv_A 136 IL------PNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEAT 176 (302)
T ss_dssp HS------TTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hC------CCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEe
Confidence 42 3456999998865433 3346677777899887543
No 168
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=58.24 E-value=35 Score=30.81 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLH 194 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~ 194 (376)
+.+.++..++.|+.+|-+ ++. -.++++++.+++|+++
T Consensus 38 ~~~~A~a~~~~Ga~~i~~--~~~-~~i~~ir~~v~~Pvig 74 (232)
T 3igs_A 38 VAAMALAAEQAGAVAVRI--EGI-DNLRMTRSLVSVPIIG 74 (232)
T ss_dssp HHHHHHHHHHTTCSEEEE--ESH-HHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHCCCeEEEE--CCH-HHHHHHHHhcCCCEEE
Confidence 455567788899998775 332 3488999999999985
No 169
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=57.74 E-value=47 Score=30.44 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCcEEEEeC
Q 017159 156 RHKRAFLEQAGARCIVMPC 174 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaC 174 (376)
.+.++.|++.|+|.|-+--
T Consensus 34 ~~~~~~l~~~GaD~ieig~ 52 (268)
T 1qop_A 34 LKIIDTLIDAGADALELGV 52 (268)
T ss_dssp HHHHHHHHHTTCSSEEEEC
T ss_pred HHHHHHHHHCCCCEEEECC
Confidence 4455678889999887754
No 170
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=57.63 E-value=52 Score=30.52 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=9.3
Q ss_pred CCCCCCCeEeecCCcc
Q 017159 110 DAEECPPFVVCNDPAL 125 (376)
Q Consensus 110 ~dq~~~p~il~s~p~i 125 (376)
+...-+||++.-+|+.
T Consensus 16 ~~~ali~yi~aGdP~~ 31 (267)
T 3vnd_A 16 DKGAFVPFVTIGDPSP 31 (267)
T ss_dssp TCCEEEEEEETTSSCH
T ss_pred CCCeEEEEEeCCCCCH
Confidence 3344577776666643
No 171
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=56.76 E-value=30 Score=30.18 Aligned_cols=82 Identities=10% Similarity=0.058 Sum_probs=45.4
Q ss_pred eEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHH
Q 017159 84 TIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLE 163 (376)
Q Consensus 84 ~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~ 163 (376)
++||| ||..|-....++..+....-+-. .++-+.|-...| +.+.+ .++..+
T Consensus 8 ~V~Ii--mgS~SD~~v~~~a~~~l~~~gi~-~ev~V~SaHR~p----------------------~~~~~----~~~~a~ 58 (169)
T 3trh_A 8 FVAIL--MGSDSDLSTMETAFTELKSLGIP-FEAHILSAHRTP----------------------KETVE----FVENAD 58 (169)
T ss_dssp EEEEE--ESCGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTSH----------------------HHHHH----HHHHHH
T ss_pred cEEEE--ECcHHhHHHHHHHHHHHHHcCCC-EEEEEEcccCCH----------------------HHHHH----HHHHHH
Confidence 57887 66666666777777766543321 223333321111 33333 334567
Q ss_pred HcCCcEEEEeC-CCchhhHHHHhccCCCCeecc
Q 017159 164 QAGARCIVMPC-HISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 164 ~~Gad~IVIaC-NTAH~~~d~L~~~~~vPvl~I 195 (376)
+.|+++|+... -.+| .---+...+..|||++
T Consensus 59 ~~g~~ViIa~AG~aa~-LpgvvA~~t~~PVIgV 90 (169)
T 3trh_A 59 NRGCAVFIAAAGLAAH-LAGTIAAHTLKPVIGV 90 (169)
T ss_dssp HTTEEEEEEEECSSCC-HHHHHHHTCSSCEEEE
T ss_pred hCCCcEEEEECChhhh-hHHHHHhcCCCCEEEe
Confidence 78998554433 3334 3455666778899886
No 172
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=56.20 E-value=32 Score=30.15 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=45.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 83 NTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 83 k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
.++||| ||..|-....++..+....-+-. .++-+.|-...| +.+.++ ++..
T Consensus 8 ~~V~Ii--mgS~SD~~v~~~a~~~L~~~gi~-~ev~V~SaHR~p----------------------~~~~~~----~~~a 58 (174)
T 3lp6_A 8 PRVGVI--MGSDSDWPVMADAAAALAEFDIP-AEVRVVSAHRTP----------------------EAMFSY----ARGA 58 (174)
T ss_dssp CSEEEE--ESCGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTCH----------------------HHHHHH----HHHH
T ss_pred CeEEEE--ECcHHhHHHHHHHHHHHHHcCCC-EEEEEECCCCCH----------------------HHHHHH----HHHH
Confidence 457777 66666666677777666543321 223333321111 333333 3456
Q ss_pred HHcCCcEEEEeC-CCchhhHHHHhccCCCCeecc
Q 017159 163 EQAGARCIVMPC-HISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 163 ~~~Gad~IVIaC-NTAH~~~d~L~~~~~vPvl~I 195 (376)
++.|+++|+... -.+| .---+...+..|||++
T Consensus 59 ~~~g~~ViIa~AG~aa~-LpgvvA~~t~~PVIgV 91 (174)
T 3lp6_A 59 AARGLEVIIAGAGGAAH-LPGMVAAATPLPVIGV 91 (174)
T ss_dssp HHHTCCEEEEEEESSCC-HHHHHHHHCSSCEEEE
T ss_pred HhCCCCEEEEecCchhh-hHHHHHhccCCCEEEe
Confidence 678998554333 3334 3445666678888886
No 173
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=55.54 E-value=49 Score=29.65 Aligned_cols=104 Identities=7% Similarity=0.050 Sum_probs=53.7
Q ss_pred CCeEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecCCcch--hHHhhhchhhhccccccCcchHHHHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCNDPALN--EELFHASVHSLKSKTVQLDHIRGAVSQNLRH 157 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~p~ip--d~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~ 157 (376)
|++|+|+. |-|.- ++.|.+....++. ..+..|+.++|+-+ .+-..++.|...-...... ++++.- .+
T Consensus 2 m~riavl~Sg~Gsn-----l~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~~~~-~r~~~d---~~ 72 (211)
T 3p9x_A 2 MKRVAIFASGSGTN-----AEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKTYP-SKEAYE---IE 72 (211)
T ss_dssp -CEEEEECCTTCHH-----HHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCGGGSS-SHHHHH---HH
T ss_pred CCEEEEEEeCCchH-----HHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeChhhcC-chhhhH---HH
Confidence 78899986 76633 7888887765443 34666666767654 2222233333210100111 112211 23
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
..+.|++.++|+||++... +..=+++-+.....+||+
T Consensus 73 ~~~~l~~~~~Dliv~agy~-~Il~~~~l~~~~~~~iNi 109 (211)
T 3p9x_A 73 VVQQLKEKQIDFVVLAGYM-RLVGPTLLGAYEGRIVNI 109 (211)
T ss_dssp HHHHHHHTTCCEEEESSCC-SCCCHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCEEEEeCch-hhcCHHHHhhccCCeEEE
Confidence 3456788999999998764 444233333333334444
No 174
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=55.45 E-value=21 Score=31.50 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=45.5
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHH
Q 017159 82 ANTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAF 161 (376)
Q Consensus 82 ~k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 161 (376)
..++||| ||..|-....++..+....-+-. .++-+.|-...| +.+ .+.++.
T Consensus 21 ~~~V~Ii--mGS~SD~~v~~~a~~~L~~~Gi~-~dv~V~SaHR~p----------------------~~l----~~~~~~ 71 (182)
T 1u11_A 21 APVVGII--MGSQSDWETMRHADALLTELEIP-HETLIVSAHRTP----------------------DRL----ADYART 71 (182)
T ss_dssp CCSEEEE--ESSGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTCH----------------------HHH----HHHHHH
T ss_pred CCEEEEE--ECcHHHHHHHHHHHHHHHHcCCC-eEEEEEcccCCH----------------------HHH----HHHHHH
Confidence 4468888 66777777788877766543322 233333322111 233 222344
Q ss_pred HHHcCCcEEEE-eCCCchhhHHHHhccCCCCeecc
Q 017159 162 LEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 162 L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~I 195 (376)
.++.|+++|+. +--.+| .---+...+..|||++
T Consensus 72 a~~~g~~ViIa~AG~aa~-LpgvvA~~t~~PVIgV 105 (182)
T 1u11_A 72 AAERGLNVIIAGAGGAAH-LPGMCAAWTRLPVLGV 105 (182)
T ss_dssp TTTTTCCEEEEEEESSCC-HHHHHHHHCSSCEEEE
T ss_pred HHhCCCcEEEEecCchhh-hHHHHHhccCCCEEEe
Confidence 55678885433 333334 2445666678888876
No 175
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=55.44 E-value=34 Score=34.30 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=45.0
Q ss_pred CCcEEEEeCC--CchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcCC
Q 017159 166 GARCIVMPCH--ISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQGF 242 (376)
Q Consensus 166 Gad~IVIaCN--TAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G~ 242 (376)
++|+||+.-- -.|+.+.+.++ .++||++=+|...+..+. .+.|||-||.| |--+.+....|++.|.
T Consensus 81 ~~d~vV~Spgi~~~~p~~~~a~~-~gi~v~~~~e~l~~~~~~----------~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 81 DASVVVVSTAISADNPEIVAARE-ARIPVIRRAEMLAELMRY----------RHGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp TCSEEEECTTSCTTCHHHHHHHH-TTCCEEEHHHHHHHHHTT----------SEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-CCCCEEcHHHHHHHHhcC----------CCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 6898886532 23566666554 489999988876653321 13699999988 3334566778888886
Q ss_pred c
Q 017159 243 E 243 (376)
Q Consensus 243 e 243 (376)
+
T Consensus 150 ~ 150 (494)
T 4hv4_A 150 D 150 (494)
T ss_dssp C
T ss_pred C
Confidence 5
No 176
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=55.17 E-value=46 Score=30.95 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=28.4
Q ss_pred HHHHhcc-CCCCeeccH----------HHHHHHHHHhcCCCCcCCCCceEEEeecchhh-chHHHHHHHHhcCCcee
Q 017159 181 HGDVSEG-CSIPFLHVG----------ECVAKELKEAKLKPLEAGSGVRIGVLATDATL-SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 181 ~d~L~~~-~~vPvl~Iv----------eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~-~s~~Y~~~L~~~G~evv 245 (376)
..++++. .++|++-|. +.-++.+++.|.. ||+.-+-.. +...|.+.++++|++.+
T Consensus 88 v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvd----------GvIipDlp~ee~~~~~~~~~~~gl~~I 154 (271)
T 3nav_A 88 IAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVD----------SVLIADVPTNESQPFVAAAEKFGIQPI 154 (271)
T ss_dssp HHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCC----------EEEETTSCGGGCHHHHHHHHHTTCEEE
T ss_pred HHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCC----------EEEECCCCHHHHHHHHHHHHHcCCeEE
Confidence 4445554 567765542 3345556666543 333333333 23446666777776644
No 177
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=54.91 E-value=16 Score=35.75 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh--HHHHhccCCCCee
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW--HGDVSEGCSIPFL 193 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~~~vPvl 193 (376)
+.+.++.|+++|||.|=+++++.-.. +.++++.+++|++
T Consensus 48 tv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlv 88 (366)
T 3noy_A 48 TLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVI 88 (366)
T ss_dssp HHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEE
Confidence 34445679999999999999986554 8899999999984
No 178
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=54.01 E-value=26 Score=30.71 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=45.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHH
Q 017159 84 TIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLE 163 (376)
Q Consensus 84 ~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~ 163 (376)
++||| ||..|-....++..+....-+-. .++-+.|-...| +.+.++ ++..+
T Consensus 14 ~V~Ii--mGS~SD~~v~~~a~~~L~~~Gi~-~ev~V~SaHR~p----------------------~~~~~~----~~~a~ 64 (174)
T 3kuu_A 14 KIAIV--MGSKSDWATMQFAADVLTTLNVP-FHVEVVSAHRTP----------------------DRLFSF----AEQAE 64 (174)
T ss_dssp CEEEE--ESSGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTCH----------------------HHHHHH----HHHTT
T ss_pred cEEEE--ECcHHHHHHHHHHHHHHHHcCCC-EEEEEEcccCCH----------------------HHHHHH----HHHHH
Confidence 58887 66666667788777766543321 233333322111 233333 34456
Q ss_pred HcCCcEEEEeC-CCchhhHHHHhccCCCCeecc
Q 017159 164 QAGARCIVMPC-HISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 164 ~~Gad~IVIaC-NTAH~~~d~L~~~~~vPvl~I 195 (376)
+.|+++|+... -.+| .---+...+..|||++
T Consensus 65 ~~g~~ViIa~AG~aa~-LpgvvA~~t~~PVIgV 96 (174)
T 3kuu_A 65 ANGLHVIIAGNGGAAH-LPGMLAAKTLVPVLGV 96 (174)
T ss_dssp TTTCSEEEEEEESSCC-HHHHHHHTCSSCEEEE
T ss_pred hCCCcEEEEECChhhh-hHHHHHhccCCCEEEe
Confidence 67898554333 3334 3455666778888886
No 179
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=53.78 E-value=44 Score=31.76 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch------------hhHHHHhccCCCCeeccH----HHHHHHHHHhc-CCCCcCCCCc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISH------------AWHGDVSEGCSIPFLHVG----ECVAKELKEAK-LKPLEAGSGV 217 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH------------~~~d~L~~~~~vPvl~Iv----eat~~~~~~~g-~k~~~~~~~~ 217 (376)
..+.++.|++.|+|+|-+..-|.+ .+..++++.+++||+... ...++++.+.| ..
T Consensus 231 ~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD-------- 302 (338)
T 1z41_A 231 HIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRAD-------- 302 (338)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCS--------
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCce--------
Confidence 445567899999999988654311 125677777888888542 23344455544 22
Q ss_pred eEEEeecchhhchHHHHHHHHhcCCceeec
Q 017159 218 RIGVLATDATLSAGFYQEKLQNQGFEVVLP 247 (376)
Q Consensus 218 rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p 247 (376)
-| .+|+.....-.+..+..+..+-++..|
T Consensus 303 ~V-~iGR~~i~nPdl~~ki~~~~~~~i~~~ 331 (338)
T 1z41_A 303 LI-FIGRELLRDPFFARTAAKQLNTEIPAP 331 (338)
T ss_dssp EE-EECHHHHHCTTHHHHHHHHTTCCCCCC
T ss_pred EE-eecHHHHhCchHHHHHHcCCCcccCCc
Confidence 34 477777666666666655555444333
No 180
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=53.49 E-value=76 Score=30.00 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCCCcCCCCceEEEe------ecchhhc--hHHHHHHHHh-cCCceee
Q 017159 198 CVAKELKEAKLKPLEAGSGVRIGVL------ATDATLS--AGFYQEKLQN-QGFEVVL 246 (376)
Q Consensus 198 at~~~~~~~g~k~~~~~~~~rVGlL------aT~~T~~--s~~Y~~~L~~-~G~evv~ 246 (376)
+.++.++..|.+ +|+++ ..+...- ..-+.+.+.+ .|+++..
T Consensus 136 a~~~~l~~~~w~--------~v~ii~~~d~~~~~~~~g~~~~~~~~~~~~~~g~~v~~ 185 (435)
T 1dp4_A 136 FVTALHRRLGWE--------HQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVNH 185 (435)
T ss_dssp HHHHHHHHHTCC--------SEEEEEEECCSSSCCHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHCCCc--------EEEEEEEccCCCCcchHHHHHHHHHHHHHhhcCeEEEE
Confidence 445556655554 89999 5532111 1113455566 7887753
No 181
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=51.64 E-value=58 Score=30.50 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=57.3
Q ss_pred CCeEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
+++|+|++ |-|. .++.|.+....++. ..+..|+.|+|+....-..++.|...-.... .++++.- .+..
T Consensus 90 ~~ri~vl~Sg~g~-----~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~--~~r~~~~---~~~~ 159 (286)
T 3n0v_A 90 RPKVVIMVSKADH-----CLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHKIPYYHFALDP--KDKPGQE---RKVL 159 (286)
T ss_dssp CCEEEEEESSCCH-----HHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCBT--TBHHHHH---HHHH
T ss_pred CcEEEEEEeCCCC-----CHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCc--CCHHHHH---HHHH
Confidence 56788887 7774 26777776655433 4577788888876543333344432101001 1112211 2234
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+.|++.++|+||++... +..-+.+-+...-.+||+
T Consensus 160 ~~l~~~~~Dlivla~y~-~il~~~~l~~~~~~~iNi 194 (286)
T 3n0v_A 160 QVIEETGAELVILARYM-QVLSPELCRRLDGWAINI 194 (286)
T ss_dssp HHHHHHTCSEEEESSCC-SCCCHHHHHHTTTSEEEE
T ss_pred HHHHhcCCCEEEecccc-cccCHHHHhhhcCCeEEe
Confidence 56788999999999763 444344444444455554
No 182
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=51.32 E-value=58 Score=29.26 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=44.6
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc-----------------------HHHHHHHHHHhcCCCCcC
Q 017159 160 AFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV-----------------------GECVAKELKEAKLKPLEA 213 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I-----------------------veat~~~~~~~g~k~~~~ 213 (376)
+.|.+.++|.|++...... ..++.+++ .++|++-+ ...+++++.+.|.
T Consensus 52 ~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~----- 125 (306)
T 2vk2_A 52 RSFVAQGVDAIFIAPVVATGWEPVLKEAKD-AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN----- 125 (306)
T ss_dssp HHHHHHTCSEEEECCSSSSSCHHHHHHHHH-TTCCEEEESSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHcCCCEEEEeCCChhhHHHHHHHHHH-CCCCEEEecCCCCCCCccceEEEEecCHHHHHHHHHHHHHHhcC-----
Confidence 4566679999888654322 34555543 34555422 2345667777661
Q ss_pred CCCceEEEeecchh---h--chHHHHHHHHhcCC
Q 017159 214 GSGVRIGVLATDAT---L--SAGFYQEKLQNQGF 242 (376)
Q Consensus 214 ~~~~rVGlLaT~~T---~--~s~~Y~~~L~~~G~ 242 (376)
+..+||++++.+.. . +..-|.+.++++|.
T Consensus 126 g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 159 (306)
T 2vk2_A 126 GKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 159 (306)
T ss_dssp TSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT
T ss_pred CCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC
Confidence 01249999976432 1 22337788888885
No 183
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=51.32 E-value=40 Score=32.43 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCc-----------h--hhHHHHhccCCCCeeccH----HHHHHHHHHhcCCCCcCCCC
Q 017159 154 NLRHKRAFLEQAGARCIVMPCHIS-----------H--AWHGDVSEGCSIPFLHVG----ECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 154 ~l~~~~~~L~~~Gad~IVIaCNTA-----------H--~~~d~L~~~~~vPvl~Iv----eat~~~~~~~g~k~~~~~~~ 216 (376)
...+.++.|+++|+|+|-+...+. . .+..++++.+++||+... .+.++++.+.|. .
T Consensus 247 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~-------a 319 (363)
T 3l5l_A 247 ESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQ-------L 319 (363)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTS-------C
T ss_pred HHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCC-------c
Confidence 345667889999999998875321 1 125677888889988653 234555555541 1
Q ss_pred ceEEEeecchhhchHHHHHHHHhcCC
Q 017159 217 VRIGVLATDATLSAGFYQEKLQNQGF 242 (376)
Q Consensus 217 ~rVGlLaT~~T~~s~~Y~~~L~~~G~ 242 (376)
.-|+ +|+.....-.+..+..+..|+
T Consensus 320 D~V~-iGR~~lanPdl~~k~~~~lg~ 344 (363)
T 3l5l_A 320 DLVS-VGRAHLADPHWAYFAAKELGV 344 (363)
T ss_dssp SEEE-CCHHHHHCTTHHHHHHHHTTC
T ss_pred cEEE-ecHHHHhCchHHHHHHHHcCC
Confidence 1344 777766666666666666664
No 184
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=50.42 E-value=90 Score=30.10 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-...++|||+|. |+.-+.-- +.++-+.+-+.|+. ..|.||+=.+-.
T Consensus 155 D~Tl~~Lak~Als~A~AGAdiVA-PSdMMDGr---------------V~aIR~aLd~~G~~-------~~v~ImsYsaKy 211 (342)
T 1h7n_A 155 ERSVSRLAAVAVNYAKAGAHCVA-PSDMIDGR---------------IRDIKRGLINANLA-------HKTFVLSYAAKF 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEE-ECCCCTTH---------------HHHHHHHHHHTTCT-------TTCEEEEEEEEB
T ss_pred HHHHHHHHHHHHHHHHcCCCeee-cccccccH---------------HHHHHHHHHHCCCc-------cCceEeechHHH
Confidence 67778888888889999999654 66655433 33444455666761 268899888888
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-.+.|-....-+..+.+ + +....++.++++...+ ++|||.|+.
T Consensus 212 ASafYGPFRdAa~Sap~~GDRktYQ--m----------dpaN~~EAlre~~~Di-~EGAD~vMV 262 (342)
T 1h7n_A 212 SGNLYGPFRDAACSAPSNGDRKCYQ--L----------PPAGRGLARRALERDM-SEGADGIIV 262 (342)
T ss_dssp CSSCCHHHHHHHTCCCSSSCSTTTS--B----------CTTCHHHHHHHHHHHH-HTTCSEEEE
T ss_pred hHHhhHHHHHHHhcCCCCCCccccC--C----------CCCCHHHHHHHHHhhH-HhCCCeEEE
Confidence 8989887665555433222222211 1 1112455667665555 579997765
No 185
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=50.36 E-value=61 Score=28.88 Aligned_cols=159 Identities=9% Similarity=0.044 Sum_probs=77.5
Q ss_pred HHHHHcCCcEEEEeCCCch---hhHHHHhccCCCCeecc---------------------------HHHHHHHHHHh-c-
Q 017159 160 AFLEQAGARCIVMPCHISH---AWHGDVSEGCSIPFLHV---------------------------GECVAKELKEA-K- 207 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH---~~~d~L~~~~~vPvl~I---------------------------veat~~~~~~~-g- 207 (376)
+.+...++|.|++...... ..++.+++ .++|++-+ ...+++++.+. |
T Consensus 53 ~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~ 131 (288)
T 1gud_A 53 EDLSNKNYKGIAFAPLSSVNLVMPVARAWK-KGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGA 131 (288)
T ss_dssp HHHHTSSEEEEEECCSSSSTTHHHHHHHHH-TTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHcCCCEEEEeCCChHHHHHHHHHHHH-CCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCC
Confidence 4455678998887543322 23455543 35565422 23456677776 6
Q ss_pred -CCCCcCCCCceEEEeecchh-----hchHHHHHHHHhc-CCceee--cCccccccchHHHHHH-HhcC-ChH----HHH
Q 017159 208 -LKPLEAGSGVRIGVLATDAT-----LSAGFYQEKLQNQ-GFEVVL--PDKATMEHVIIPTIEA-LNHR-DME----GAR 272 (376)
Q Consensus 208 -~k~~~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~-G~evv~--p~~~~q~~~l~~~ie~-lk~G-~~~----~a~ 272 (376)
.+ ||++++.+.. .+..-|.+.++++ |+++.. ......+. -...++. +..+ .++ ...
T Consensus 132 ~~~--------~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ai~~~nD 202 (288)
T 1gud_A 132 EGG--------EVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIK-ALDVATNVLQRNPNIKAIYCAND 202 (288)
T ss_dssp GCE--------EEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHH-HHHHHHHHHHHCTTCCEEEESSH
T ss_pred CCC--------EEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEeecCCccHHH-HHHHHHHHHHhCCCceEEEECCC
Confidence 43 9999975422 1223388888887 876432 22111111 1111222 2222 111 011
Q ss_pred HHHHHHHHHHhhCCC--CEEEECCCccccccCC-CCCC-CCeeeehHHHHHHHHHHHHHh
Q 017159 273 NLLRIGIQLLLVRAV--NAVIIGSDEMQGVLPK-DDPL-LKKCIDPMDALARSTVTWARS 328 (376)
Q Consensus 273 ~~l~~~i~~L~~~ga--DaVILGCTElpll~~~-~~~~-~vpvIDp~~~lA~a~v~~a~~ 328 (376)
.....+++.+.+.|. |.-|.|....+..... ..+. ...+-=+...+++.+++.+..
T Consensus 203 ~~A~g~~~al~~~G~~~dv~vvGfD~~~~~~~~~~~p~~lttv~q~~~~~g~~a~~~l~~ 262 (288)
T 1gud_A 203 TMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVD 262 (288)
T ss_dssp HHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHHTSSCEEEECCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCccEEEEEcCHHHHHHHHHHHHHH
Confidence 222334455555553 6888898888754211 0111 112333455666666665544
No 186
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=50.24 E-value=46 Score=31.51 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=57.1
Q ss_pred cCCeEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 81 QANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 81 ~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
.+++|+|++ |-|. .++.|.+....++. ..+..|+.|+|+....-..++.|...-.....+. ++.- .+.
T Consensus 104 ~~~ri~vl~Sg~g~-----nl~~ll~~~~~g~l~~~I~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r--~~~~---~~~ 173 (302)
T 3o1l_A 104 QKKRVVLMASRESH-----CLADLLHRWHSDELDCDIACVISNHQDLRSMVEWHDIPYYHVPVDPKDK--EPAF---AEV 173 (302)
T ss_dssp SCCEEEEEECSCCH-----HHHHHHHHHHTTCSCSEEEEEEESSSTTHHHHHTTTCCEEECCCCSSCC--HHHH---HHH
T ss_pred CCcEEEEEEeCCch-----hHHHHHHHHHCCCCCcEEEEEEECcHHHHHHHHHcCCCEEEcCCCcCCH--HHHH---HHH
Confidence 467899987 7764 26777776655432 3577888888887544333344432111011111 2211 223
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
.+.|++.++|+||++... ...-+.+-+...-.+||+
T Consensus 174 ~~~l~~~~~DliVlagym-~IL~~~~l~~~~~~~INi 209 (302)
T 3o1l_A 174 SRLVGHHQADVVVLARYM-QILPPQLCREYAHQVINI 209 (302)
T ss_dssp HHHHHHTTCSEEEESSCC-SCCCTTHHHHTTTCEEEE
T ss_pred HHHHHHhCCCEEEHhHhh-hhcCHHHHhhhhCCeEEe
Confidence 456788999999998863 443233333333345554
No 187
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=50.17 E-value=86 Score=28.57 Aligned_cols=19 Identities=5% Similarity=-0.041 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCcEEEEeC
Q 017159 156 RHKRAFLEQAGARCIVMPC 174 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaC 174 (376)
.+.++.|++.|+|.|-+--
T Consensus 34 ~~~~~~l~~~G~D~IElG~ 52 (262)
T 2ekc_A 34 LKAFKEVLKNGTDILEIGF 52 (262)
T ss_dssp HHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 4445678889999987744
No 188
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=49.55 E-value=54 Score=29.96 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=77.0
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc------------------HHHHHHHHHHhcCCCCcCCCCceEE
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV------------------GECVAKELKEAKLKPLEAGSGVRIG 220 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I------------------veat~~~~~~~g~k~~~~~~~~rVG 220 (376)
++.|.+.++|.|+++++. .. +.++ ..++|++-+ ...+++++.+.|++ |||
T Consensus 109 ~~~l~~~~vdgiI~~~~~-~~--~~l~-~~~iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I~ 176 (330)
T 3ctp_A 109 LEVLQSHRVAGIIASRSQ-CE--DEYA-NIDIPVVAFENHILDNIITISSDNYNGGRMAFDHLYEKGCR--------KIL 176 (330)
T ss_dssp HHHHHHTTCSEEEEETCC-CS--GGGT-TCCSCEEEESSCCCTTSCEEEECHHHHHHHHHHHHHHTTCC--------SEE
T ss_pred HHHHHhCCCCEEEECCCC-CH--HHHH-hcCCCEEEEeccCCCCCCEEEeCHHHHHHHHHHHHHHCCCC--------eEE
Confidence 345667899998843332 21 3333 345665532 23456677777764 899
Q ss_pred Eeecchh---h--chHHHHHHHHhcCCcee---ecCccccc---cchHHHHHHHhc--CChHHHHHHHHHHHHHHhhCC-
Q 017159 221 VLATDAT---L--SAGFYQEKLQNQGFEVV---LPDKATME---HVIIPTIEALNH--RDMEGARNLLRIGIQLLLVRA- 286 (376)
Q Consensus 221 lLaT~~T---~--~s~~Y~~~L~~~G~evv---~p~~~~q~---~~l~~~ie~lk~--G~~~~a~~~l~~~i~~L~~~g- 286 (376)
+++.+.. . +..-|.+.++++|+++. .......+ ..+..+++. .. +.+-........+++.+.+.|
T Consensus 177 ~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~ai~~~~d~~A~g~~~al~~~G~ 255 (330)
T 3ctp_A 177 HIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQHDFQVKMLEEDINSMKDI-VNYDGIFVFNDIAAATVMRALKKRGV 255 (330)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSSSCCGGGGGCCCTTGGGG-GGSSEEEESSHHHHHHHHHHHHHTTC
T ss_pred EEeCCccCccHHHHHHHHHHHHHHcCCCcceeEEcCCCCHHHHHHHHHHHhcC-CCCcEEEECCHHHHHHHHHHHHHcCC
Confidence 9976532 1 22337888999998642 22111111 111111111 00 011001122233445555555
Q ss_pred ---CCEEEECCCccccccCCCCCCCCeee-ehHHHHHHHHHHHHHh
Q 017159 287 ---VNAVIIGSDEMQGVLPKDDPLLKKCI-DPMDALARSTVTWARS 328 (376)
Q Consensus 287 ---aDaVILGCTElpll~~~~~~~~vpvI-Dp~~~lA~a~v~~a~~ 328 (376)
-|.-|.|+...+... ...+. +..| =+...+++.+++.+..
T Consensus 256 ~vP~disvvg~D~~~~~~-~~~p~-lttv~~~~~~~g~~a~~~l~~ 299 (330)
T 3ctp_A 256 SIPQEVQIIGFDNSFIGE-LLYPS-LTTINQPIEALAYTIIELLIK 299 (330)
T ss_dssp CTTTTCEEECSBCCTHHH-HSSSC-CBEEECCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECChHHHh-cCCCC-cceEECCHHHHHHHHHHHHHH
Confidence 378899998887531 11221 2333 3456666666666554
No 189
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=49.51 E-value=1.1e+02 Score=30.29 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=44.3
Q ss_pred HcCCcEEEEeCCCchhh-HHHHhccCCCCeecc--------------------------HHHHHHHHHHhcCCCCcCCCC
Q 017159 164 QAGARCIVMPCHISHAW-HGDVSEGCSIPFLHV--------------------------GECVAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 164 ~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~I--------------------------veat~~~~~~~g~k~~~~~~~ 216 (376)
+.++.+|+=+..+.... ...+-+..++|.|+. ..+.++.++..|.+
T Consensus 126 ~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~------- 198 (496)
T 3ks9_A 126 KKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWT------- 198 (496)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCC-------
T ss_pred CCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCc-------
Confidence 34565555554443332 444555566776652 33556666665654
Q ss_pred ceEEEeecchhhc---hHHHHHHHHhcCCceee
Q 017159 217 VRIGVLATDATLS---AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 217 ~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~ 246 (376)
+||++.++...- ...+++.+++.|+++..
T Consensus 199 -~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~ 230 (496)
T 3ks9_A 199 -YVSAVHTEGNYGESGMDAFKELAAQEGLSIAH 230 (496)
T ss_dssp -EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -EEEEEEeccHHHHHHHHHHHHHHHHcCceEEE
Confidence 999999865432 23466778888988763
No 190
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=49.43 E-value=62 Score=30.72 Aligned_cols=89 Identities=9% Similarity=0.123 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHhcCCCCcCCC-CceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEAKLKPLEAGS-GVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~g~k~~~~~~-~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=... |-.++++.+..++||||..+ +.+. .+.+..-+ -. +.+|+++|=
T Consensus 81 l~DTarvls~~-~D~iviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~----l~~gl~va~vGD 154 (307)
T 3tpf_A 81 VKDTARVIGAM-VDFVMMRVNK-HETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKM----QNGIAKVAFIGD 154 (307)
T ss_dssp HHHHHHHHHHH-SSEEEEECSC-HHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHTTCC----GGGCCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecCC-hHHHHHHHHhCCCCEEeCCCCCcCcHHHHHHHHHHHHHhCC----CCCCCEEEEEcC
Confidence 45556778888 9999998874 77788999999999998754 2222 23332100 12 568999997
Q ss_pred chhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
.. --.+.+-..+...|.++.+-.++
T Consensus 155 ~~-~va~Sl~~~~~~~G~~v~~~~P~ 179 (307)
T 3tpf_A 155 SN-NMCNSWLITAAILGFEISIAMPK 179 (307)
T ss_dssp SS-HHHHHHHHHHHHHTCEEEEECCT
T ss_pred CC-ccHHHHHHHHHHcCCEEEEECCC
Confidence 32 22334556667779888765543
No 191
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=49.37 E-value=65 Score=30.28 Aligned_cols=104 Identities=10% Similarity=0.054 Sum_probs=57.8
Q ss_pred cCCeEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 81 QANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 81 ~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
++++|+|+. |-|. .++.|.+....++. ..+..|+.|+|+....-..++.|...-.... ..+++.- .+.
T Consensus 94 ~~~ri~vl~Sg~g~-----~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~--~~r~~~~---~~~ 163 (292)
T 3lou_A 94 ARPKVLIMVSKLEH-----CLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQHGLPFRHFPITA--DTKAQQE---AQW 163 (292)
T ss_dssp SCCEEEEEECSCCH-----HHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCCS--SCHHHHH---HHH
T ss_pred CCCEEEEEEcCCCc-----CHHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCc--CCHHHHH---HHH
Confidence 456899887 7774 26777776655432 3577888888876543333344432101001 1112221 223
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
.+.|++.++|+||++... +..-+++-+...-.+||+
T Consensus 164 ~~~l~~~~~Dlivla~y~-~il~~~~l~~~~~~~iNi 199 (292)
T 3lou_A 164 LDVFETSGAELVILARYM-QVLSPEASARLANRAINI 199 (292)
T ss_dssp HHHHHHHTCSEEEESSCC-SCCCHHHHHHTTTSEEEE
T ss_pred HHHHHHhCCCEEEecCch-hhCCHHHHhhhcCCeEEe
Confidence 456788899999999874 444344444444445554
No 192
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=48.89 E-value=20 Score=36.82 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc-----------hhhHHHHhccCCCCee---ccHH------------HHHHHHHHhcC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHIS-----------HAWHGDVSEGCSIPFL---HVGE------------CVAKELKEAKL 208 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTA-----------H~~~d~L~~~~~vPvl---~Ive------------at~~~~~~~g~ 208 (376)
-.+.++.+++.|||.+.+.=-++ ...+.++.+.+++|+. +|-+ +.++.+.+.|.
T Consensus 282 p~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGa 361 (555)
T 1jvn_A 282 PVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGA 361 (555)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCC
Confidence 45567788889999886652222 1235677777899998 6543 44777777776
Q ss_pred CCCcCCCCceEEEeecchhhc-------------hHHHHHHHHhcCCceeecCcc
Q 017159 209 KPLEAGSGVRIGVLATDATLS-------------AGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 209 k~~~~~~~~rVGlLaT~~T~~-------------s~~Y~~~L~~~G~evv~p~~~ 250 (376)
. +| +++|....+ ..+.++..+++|-+.++.+.+
T Consensus 362 d--------~V-~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD 407 (555)
T 1jvn_A 362 D--------KV-SIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVD 407 (555)
T ss_dssp S--------EE-EECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEEC
T ss_pred C--------EE-EECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEE
Confidence 4 55 588866321 356777777777544444433
No 193
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=48.75 E-value=66 Score=29.78 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh-----hHHHHhccCCCCeec---cHHH-HHHHHHHhcCC
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHA-----WHGDVSEGCSIPFLH---VGEC-VAKELKEAKLK 209 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~-----~~d~L~~~~~vPvl~---Ivea-t~~~~~~~g~k 209 (376)
.+.++..++.||++|-+-+..-.. .+.++++.+++|++- +++. .++.++..|..
T Consensus 75 ~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD 137 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGAD 137 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCC
Confidence 455677889999999877654211 156677788999862 3445 37777777764
No 194
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=48.28 E-value=44 Score=32.10 Aligned_cols=93 Identities=9% Similarity=0.048 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH-------HHH--HHHHh-cC-C-CCcCCCCceEEEe
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC-------VAK--ELKEA-KL-K-PLEAGSGVRIGVL 222 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea-------t~~--~~~~~-g~-k-~~~~~~~~rVGlL 222 (376)
+.+.++-|.+. +|+|||=... |-.++++.+..++||||..+- .+. .+.+. |. . ....-.+.+|+++
T Consensus 90 l~DTarvls~~-~D~iviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~v 167 (328)
T 3grf_A 90 VQDTAEVFSRM-VDICTARLAT-KEMMREMAQHASVPCINALDDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYC 167 (328)
T ss_dssp HHHHHHHHTTT-CSEEEEECSS-HHHHHHHHHHCSSCEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEE
T ss_pred HHHHHHHHHhh-CCEEEEecCC-hhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCCccccccccCCcEEEEe
Confidence 55566778777 9999999874 777899999999999987541 111 12221 20 0 0000124589999
Q ss_pred ecchhhchHHHHHHHHhcCCceeecCc
Q 017159 223 ATDATLSAGFYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 223 aT~~T~~s~~Y~~~L~~~G~evv~p~~ 249 (376)
|=...--.+.+-..+...|.++.+-.+
T Consensus 168 GD~~~~va~Sl~~~~~~~G~~v~~~~P 194 (328)
T 3grf_A 168 GDSMNNVTYDLMRGCALLGMECHVCCP 194 (328)
T ss_dssp SCCSSHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCcchHHHHHHHHHHcCCEEEEECC
Confidence 864111223355566777988876554
No 195
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=48.13 E-value=1.1e+02 Score=29.47 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-...++|||+|. |+.-+.=- +.++-+.+-+.|+. .|.||+=.+-.
T Consensus 151 D~Tl~~L~k~Als~A~AGADiVA-PSdMMDGr---------------V~aIR~aLd~~G~~--------~v~ImsYsaKy 206 (337)
T 1w5q_A 151 DVSIDVLVRQALSHAEAGAQVVA-PSDMMDGR---------------IGAIREALESAGHT--------NVRVMAYSAKY 206 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEE-ECSCCTTH---------------HHHHHHHHHHTTCT--------TCEEEEEEEEB
T ss_pred HHHHHHHHHHHHHHHHcCCCeEe-cccccccH---------------HHHHHHHHHHCCCC--------CceeehhHHHH
Confidence 67778888888888999999654 66655433 33444456667764 68999988888
Q ss_pred chHHHHHHHHhcCCceee--cCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVL--PDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~--p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-.+.|-.... -+..+.+ + +....++.++++...+ ++|||.|..
T Consensus 207 ASafYGPFRdAa~Sap~f~~GDrktYQ--m----------dpaN~~EAlrE~~~Di-~EGAD~vMV 259 (337)
T 1w5q_A 207 ASAYYGPFRDAVGSASNLGKGNRATYQ--M----------DPANSDEALHEVAADL-AEGADMVMV 259 (337)
T ss_dssp CCGGGHHHHHC----------CGGGTS--B----------CTTCSHHHHHHHHHHH-HTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCcccCCCCccccC--C----------CCCChHHHHHHHHhhH-HhCCCEEEE
Confidence 999998765555543221 1221111 1 1111345666665555 579997654
No 196
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=47.62 E-value=1.2e+02 Score=29.04 Aligned_cols=92 Identities=9% Similarity=0.040 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHhcCCCCcCCCCceEEEeecc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
+.+.++-|.+. +|+|||=... |-.++++.+..++||||..+ +.+. .+.+... +...-.+.+|+++|=.
T Consensus 108 l~DTarvLs~~-~D~IviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~~-~G~~l~glkva~vGD~ 184 (339)
T 4a8t_A 108 IEDTSRVLSRL-VDILMARVER-HHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLP-EGKKLEDCKVVFVGDA 184 (339)
T ss_dssp HHHHHHHHHHH-CSEEEEECSS-HHHHHHHHHHCSSCEEECCCSSCCHHHHHHHHHHHHHTCC-TTCCGGGCEEEEESSC
T ss_pred HHHHHHHHHHh-CCEEEEecCc-HHHHHHHHHhCCCCEEECCCCCcCcHHHHHHHHHHHHHhh-cCCCCCCCEEEEECCC
Confidence 55556778888 9999999874 77788999999999998743 2222 2333210 0000134689999875
Q ss_pred hhhchHHHHHHHHhcCCceeecCcc
Q 017159 226 ATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 226 ~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
.-+ .+.+-..+...|.++.+..++
T Consensus 185 ~rv-a~Sl~~~~~~~G~~v~~~~P~ 208 (339)
T 4a8t_A 185 TQV-CFSLGLITTKMGMNFVHFGPE 208 (339)
T ss_dssp CHH-HHHHHHHHHHTTCEEEEECCT
T ss_pred chh-HHHHHHHHHHcCCEEEEECCc
Confidence 222 233556677789988765543
No 197
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=47.39 E-value=54 Score=30.22 Aligned_cols=58 Identities=19% Similarity=0.395 Sum_probs=33.4
Q ss_pred CceEEEeecchhhchHHHHHH-------HHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCC
Q 017159 216 GVRIGVLATDATLSAGFYQEK-------LQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVN 288 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~~~-------L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaD 288 (376)
.++||++-.. +...+|... ++++|+++++-.... .+...+.++.+..+++|
T Consensus 64 ~~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--------------------~~~~~~~~~~l~~~~vd 121 (333)
T 3jvd_A 64 SALVGVIVPD--LSNEYYSESLQTIQQDLKAAGYQMLVAEANS--------------------VQAQDVVMESLISIQAA 121 (333)
T ss_dssp CCEEEEEESC--SSSHHHHHHHHHHHHHHHHHTCEEEEEECCS--------------------HHHHHHHHHHHHHHTCS
T ss_pred CCEEEEEeCC--CcChHHHHHHHHHHHHHHHCCCEEEEECCCC--------------------hHHHHHHHHHHHhCCCC
Confidence 4589988764 334455443 455577666532211 11123344556667899
Q ss_pred EEEECCC
Q 017159 289 AVIIGSD 295 (376)
Q Consensus 289 aVILGCT 295 (376)
+||+..+
T Consensus 122 GiIi~~~ 128 (333)
T 3jvd_A 122 GIIHVPV 128 (333)
T ss_dssp EEEECCC
T ss_pred EEEEcch
Confidence 9999876
No 198
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=47.32 E-value=35 Score=29.62 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=43.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHH
Q 017159 84 TIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLE 163 (376)
Q Consensus 84 ~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~ 163 (376)
++||| ||..|-....++..+....-+-. .++-+.|-...| +.+.+ .++..+
T Consensus 5 ~V~Ii--mgs~SD~~v~~~a~~~l~~~gi~-~ev~V~SaHR~p----------------------~~~~~----~~~~a~ 55 (163)
T 3ors_A 5 KVAVI--MGSSSDWKIMQESCNMLDYFEIP-YEKQVVSAHRTP----------------------KMMVQ----FASEAR 55 (163)
T ss_dssp CEEEE--ESCGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTSH----------------------HHHHH----HHHHTT
T ss_pred eEEEE--ECcHHHHHHHHHHHHHHHHcCCC-EEEEEECCcCCH----------------------HHHHH----HHHHHH
Confidence 56777 56666666677777665543321 223233321111 23333 334466
Q ss_pred HcCCcEEEEeC-CCchhhHHHHhccCCCCeecc
Q 017159 164 QAGARCIVMPC-HISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 164 ~~Gad~IVIaC-NTAH~~~d~L~~~~~vPvl~I 195 (376)
+.|+++|+... -.+| .---+...+..|||++
T Consensus 56 ~~g~~ViIa~AG~aa~-LpgvvA~~t~~PVIgV 87 (163)
T 3ors_A 56 ERGINIIIAGAGGAAH-LPGMVASLTTLPVIGV 87 (163)
T ss_dssp TTTCCEEEEEEESSCC-HHHHHHHHCSSCEEEE
T ss_pred hCCCcEEEEECCchhh-hHHHHHhccCCCEEEe
Confidence 67888554333 3334 3445666678888886
No 199
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=46.64 E-value=49 Score=28.93 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=45.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 83 NTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 83 k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
.++||| ||.-|-....++..+....-+-. .++-+.|-...| +.+. +.++..
T Consensus 13 P~V~Ii--mGS~SD~~v~~~a~~~l~~~gi~-~ev~V~saHR~p----------------------~~l~----~~~~~a 63 (173)
T 4grd_A 13 PLVGVL--MGSSSDWDVMKHAVAILQEFGVP-YEAKVVSAHRMP----------------------DEMF----DYAEKA 63 (173)
T ss_dssp CSEEEE--ESSGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTSH----------------------HHHH----HHHHHH
T ss_pred CeEEEE--eCcHhHHHHHHHHHHHHHHcCCC-EEEEEEccccCH----------------------HHHH----HHHHHH
Confidence 468888 66666666677777666553321 122222222111 2333 333456
Q ss_pred HHcCCcEE-EEeCCCchhhHHHHhccCCCCeecc
Q 017159 163 EQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 163 ~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+..|+++| +++-..+|. ---+...+..|||++
T Consensus 64 ~~~g~~ViIa~AG~aahL-pgvvA~~t~~PVIgV 96 (173)
T 4grd_A 64 RERGLRAIIAGAGGAAHL-PGMLAAKTTVPVLGV 96 (173)
T ss_dssp TTTTCSEEEEEEESSCCH-HHHHHHHCCSCEEEE
T ss_pred HhcCCeEEEEeccccccc-hhhheecCCCCEEEE
Confidence 67899855 444444453 345566678888886
No 200
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=46.60 E-value=50 Score=31.48 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=82.9
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc--HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHH
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV--GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQE 235 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I--veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~ 235 (376)
.++.|+.+|+|-++.- ..|. ++++..+++|+-|+ ....++++++.+.+ ...|++...- ...+-..
T Consensus 117 vA~ll~~~G~d~vit~--DlH~--~qiqgfF~ipvd~l~a~p~l~~~i~~~~~~--------~~vVVspd~G-gv~~A~~ 183 (319)
T 3dah_A 117 VANMLEIAGVERIITM--DLHA--DQIQGFFDIPVDNIYATPILLGDLRKQNYP--------DLLVVSPDVG-GVVRARA 183 (319)
T ss_dssp HHHHHHHHTCCEEEEE--SCSC--GGGGGGCSSCEEEECCHHHHHHHHHTTCCT--------TEEEECCSST-THHHHHH
T ss_pred HHHHHHhcCCCEEEEE--ECCC--hHHhhhcCCceEecccHHHHHHHHHHhCCC--------CcEEEEeCCC-ccHHHHH
Confidence 3466888999987643 3465 67888899999555 56677777765432 4455554321 1111222
Q ss_pred HHHhcCCceeecCccccc-c--chHHHHHHHhcCCh----H---HHHHHHHHHHHHHhhCCCCEEEECCCcc--cc----
Q 017159 236 KLQNQGFEVVLPDKATME-H--VIIPTIEALNHRDM----E---GARNLLRIGIQLLLVRAVNAVIIGSDEM--QG---- 299 (376)
Q Consensus 236 ~L~~~G~evv~p~~~~q~-~--~l~~~ie~lk~G~~----~---~a~~~l~~~i~~L~~~gaDaVILGCTEl--pl---- 299 (376)
..+..|..+.+-...... . ..+.+...++ |.. + .+...+..+++.|.+.|+..|...|||= +.
T Consensus 184 lA~~L~~p~~~i~K~r~~~~~v~~~~i~g~v~-gk~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~ 262 (319)
T 3dah_A 184 LAKQLNCDLAIIDKRRPKANVAEVMNIIGEVE-GRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAAD 262 (319)
T ss_dssp HHHHTTCEEEC--------------------C-CSEEEEEEEEESSCHHHHHHHHHHHHTTCSCEEEEEEEECCCTTHHH
T ss_pred HHHHhCCCEEEEEEEeccCCceEEEEccccCC-CCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEEeecCChHHHH
Confidence 223336555443322111 0 0112222332 221 1 1345677888888899999999999982 21
Q ss_pred -ccCC-CC--------C--------CCCeeeehHHHHHHHHHHHHH
Q 017159 300 -VLPK-DD--------P--------LLKKCIDPMDALARSTVTWAR 327 (376)
Q Consensus 300 -l~~~-~~--------~--------~~vpvIDp~~~lA~a~v~~a~ 327 (376)
+.+. .+ + ..+.++|-+..+|+++.+...
T Consensus 263 ~l~~~~i~~vv~t~tip~~~~~~~~~k~~~lsva~lla~aI~~i~~ 308 (319)
T 3dah_A 263 RIAASALDELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIRR 308 (319)
T ss_dssp HHHTSSCSEEEEESSSCCCHHHHHCTTEEEECCHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeccccCchhhccCCCeEEEEcHHHHHHHHHHHhC
Confidence 1110 10 1 124578999999998876554
No 201
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=46.30 E-value=58 Score=31.18 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=... |-.++++.+..++||||..+ +.+. .+++. |- -.+.+|+++|=
T Consensus 93 l~DTarvLs~~-~D~iviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~-----l~glkva~vGD 165 (323)
T 3gd5_A 93 VRDTARVLGRY-VDGLAIRTFA-QTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGR-----LAGLKLAYVGD 165 (323)
T ss_dssp HHHHHHHHTTT-CSEEEEECSS-HHHHHHHHHHHCSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecCC-hhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCC-----CCCCEEEEECC
Confidence 55566778877 9999999874 77788898888999998755 1111 22322 21 23569999987
Q ss_pred chhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
..-+ .+.+-..+...|+++.+..++
T Consensus 166 ~~rv-a~Sl~~~~~~~G~~v~~~~P~ 190 (323)
T 3gd5_A 166 GNNV-AHSLLLGCAKVGMSIAVATPE 190 (323)
T ss_dssp CCHH-HHHHHHHHHHHTCEEEEECCT
T ss_pred CCcH-HHHHHHHHHHcCCEEEEECCC
Confidence 5322 233445566779888765543
No 202
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=46.24 E-value=32 Score=32.31 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=55.5
Q ss_pred cCCeEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecCCc-chhHHhhhchhhhccccccCc-chHHHHHHHHH
Q 017159 81 QANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCNDPA-LNEELFHASVHSLKSKTVQLD-HIRGAVSQNLR 156 (376)
Q Consensus 81 ~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~p~-ipd~l~~~s~~~~~~~~~~~~-~~~~~i~~~l~ 156 (376)
++++|+|+. |-|.- ++.|.+....+.. ..+..|+.|+|+ +-.+-..++.|... .+.. ..+++.- .
T Consensus 87 ~~~ri~vl~Sg~g~n-----l~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~~gIp~~~---~~~~~~~r~~~~---~ 155 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHC-----LGDLLYRHRLGELDMEVVGIISNHPREALSVSLVGDIPFHY---LPVTPATKAAQE---S 155 (287)
T ss_dssp CCCEEEEEECSCCHH-----HHHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCCTTSCEEE---CCCCGGGHHHHH---H
T ss_pred CCcEEEEEEeCCCcC-----HHHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHHcCCCEEE---EeccCcchhhHH---H
Confidence 467899887 77742 6677776655432 357777888876 43322222333221 0110 1112211 2
Q ss_pred HHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 157 HKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+..+.|++.++|+||++... +..-+.+-+...-.+||+
T Consensus 156 ~~~~~l~~~~~Dlivlagym-~il~~~~l~~~~~~~iNi 193 (287)
T 3nrb_A 156 QIKNIVTQSQADLIVLARYM-QILSDDLSAFLSGRCINI 193 (287)
T ss_dssp HHHHHHHHHTCSEEEESSCC-SCCCHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCEEEhhhhh-hhcCHHHHhhccCCeEEE
Confidence 23456788999999999873 444334444444445554
No 203
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=45.74 E-value=84 Score=27.85 Aligned_cols=104 Identities=10% Similarity=0.134 Sum_probs=49.2
Q ss_pred CCeEEEEc-CCChHHHHHHHHHHHHHhhhCC-CCCCCeEeecCCcch--hHHhhhchhhhccccccCcchHHHHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGKLVWYSAKDA-EECPPFVVCNDPALN--EELFHASVHSLKSKTVQLDHIRGAVSQNLRH 157 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~d-q~~~p~il~s~p~ip--d~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~ 157 (376)
|++|+|+. |-|.. ...+.+...++. ...+..|+.+.|+-+ .+-..++.|...-...... ++++.- .+
T Consensus 3 m~ki~vl~sG~g~~-----~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~~~~-~~~~~~---~~ 73 (212)
T 3av3_A 3 MKRLAVFASGSGTN-----FQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYP-SKAAFE---SE 73 (212)
T ss_dssp CEEEEEECCSSCHH-----HHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSS-SHHHHH---HH
T ss_pred CcEEEEEEECCcHH-----HHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCccccc-chhhhH---HH
Confidence 67899996 66654 444444443332 223444555545433 2222233333211111111 112221 12
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
..+.|++.++|+||++... +..-+++-+.....++|+
T Consensus 74 ~~~~l~~~~~Dliv~a~y~-~il~~~~l~~~~~~~iNi 110 (212)
T 3av3_A 74 ILRELKGRQIDWIALAGYM-RLIGPTLLSAYEGKIVNI 110 (212)
T ss_dssp HHHHHHHTTCCEEEESSCC-SCCCHHHHHHTTTCEEEE
T ss_pred HHHHHHhcCCCEEEEchhh-hhCCHHHHhhhcCCEEEE
Confidence 3456788999999998763 444333434444445544
No 204
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=45.52 E-value=87 Score=30.29 Aligned_cols=189 Identities=11% Similarity=0.013 Sum_probs=101.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh--HH--------------HHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCce
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW--HG--------------DVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVR 218 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~--~d--------------~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~r 218 (376)
..+.++...++|||++=.-..++... .+ ++.+...++.=. .....++.++.|
T Consensus 37 a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~-~~~L~~~~~~~G----------- 104 (349)
T 2wqp_A 37 AFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEED-EIKLKEYVESKG----------- 104 (349)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHH-HHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHH-HHHHHHHHHHhC-----------
Confidence 44455666779999998876665331 00 122222333211 133444444443
Q ss_pred EEEeecchhhchHHHHHHHHhcCCcee-ecCccccccchHHHHHHHhc-CCh----H--HHHHHHHHHHHHHhhCCCCEE
Q 017159 219 IGVLATDATLSAGFYQEKLQNQGFEVV-LPDKATMEHVIIPTIEALNH-RDM----E--GARNLLRIGIQLLLVRAVNAV 290 (376)
Q Consensus 219 VGlLaT~~T~~s~~Y~~~L~~~G~evv-~p~~~~q~~~l~~~ie~lk~-G~~----~--~a~~~l~~~i~~L~~~gaDaV 290 (376)
+-+++|+...++ -+.++++|++++ +++.+.++ .++++.+.+ |.. . .+.+.+..+++.+...|.+.+
T Consensus 105 i~~~st~~d~~s---vd~l~~~~v~~~KI~S~~~~n---~~LL~~va~~gkPviLstGmat~~Ei~~Ave~i~~~G~~ii 178 (349)
T 2wqp_A 105 MIFISTLFSRAA---ALRLQRMDIPAYKIGSGECNN---YPLIKLVASFGKPIILSTGMNSIESIKKSVEIIREAGVPYA 178 (349)
T ss_dssp CEEEEEECSHHH---HHHHHHHTCSCEEECGGGTTC---HHHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHHHTCCEE
T ss_pred CeEEEeeCCHHH---HHHHHhcCCCEEEECcccccC---HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 668888876554 456777888777 44444443 345666532 321 0 135566777777777777888
Q ss_pred EECCC-ccccccCCCC---------CC-CCeeeehH----HHHHHHHHHHHHhccccccccccCCCCCCCCcccchhHHH
Q 017159 291 IIGSD-EMQGVLPKDD---------PL-LKKCIDPM----DALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSALLQ 355 (376)
Q Consensus 291 ILGCT-Elpll~~~~~---------~~-~vpvIDp~----~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~~~ 355 (376)
+|=|| .||--.+..+ .. .+||.||- ..++.+++ +.+..-..-++.....-.+.-..+|=.+.+
T Consensus 179 Llhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~G~~~~~AAv--AlGA~iIEkH~tld~a~~G~D~~~SL~p~e 256 (349)
T 2wqp_A 179 LLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLDNYACLGAV--ALGGSILERHFTDRMDRPGPDIVCSMNPDT 256 (349)
T ss_dssp EEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHHHHH--HHTCCEEEEEBCSCTTCCSTTGGGCBCHHH
T ss_pred EEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCCcHHHHHHHH--HhCCCEEEeCCCccccCCCCChhhhCCHHH
Confidence 88774 4664221111 12 46777653 22334443 333331112233334444566677777888
Q ss_pred HHHHHHHH
Q 017159 356 FKQLWKIL 363 (376)
Q Consensus 356 ~~~~~~~~ 363 (376)
|+++.+..
T Consensus 257 f~~lv~~i 264 (349)
T 2wqp_A 257 FKELKQGA 264 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776553
No 205
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=45.51 E-value=2.2e+02 Score=27.66 Aligned_cols=83 Identities=6% Similarity=0.010 Sum_probs=45.2
Q ss_pred cCCChHHHHHHHHHHHHHhhh-CCCCCCCeEeecCCcch--------hHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 89 GGVSVSSTLNFLGKLVWYSAK-DAEECPPFVVCNDPALN--------EELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 89 GGmGp~AT~~f~~kI~~~~~~-~dq~~~p~il~s~p~ip--------d~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
||.-+.....+|+.|.+.+.+ --..|-+..+.|.-.-| +..++.+-+.+-.+....+. .+ ...+.+
T Consensus 88 ~~l~~~~i~~ifr~Ii~~s~~~Q~~~hsk~~l~sr~~~~~~t~i~i~~~~iG~~~~~~Iigpcsves-~e----~a~~~a 162 (385)
T 3nvt_A 88 GPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVSRKNKKEDTIVTVKGLPIGNGEPVFVFGPCSVES-YE----QVAAVA 162 (385)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTTSTTCCTTSCTTBTTTCCSCCCEEETTEEETSSSCEEEEECSBCCC-HH----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcccccchhhhccccCCCCcEEEECCEEECCCCeEEEEEeCCcCC-HH----HHHHHH
Confidence 789999999999999998853 11234444444432211 11111110000001111111 12 245566
Q ss_pred HHHHHcCCcEEEEeCCC
Q 017159 160 AFLEQAGARCIVMPCHI 176 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNT 176 (376)
+.+.++|||+|.+-...
T Consensus 163 ~~~k~aGa~~vk~q~fk 179 (385)
T 3nvt_A 163 ESIKAKGLKLIRGGAFK 179 (385)
T ss_dssp HHHHHTTCCEEECBSSC
T ss_pred HHHHHcCCCeEEccccc
Confidence 77888999999998854
No 206
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=45.27 E-value=91 Score=29.87 Aligned_cols=107 Identities=16% Similarity=0.227 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-...++|||+|. |+.-+.=- +.++-+.+-+.|+. .|.||+=.+-.
T Consensus 146 D~Tl~~L~k~Als~A~AGADiVA-PSdMMDGr---------------V~aIR~aLd~~G~~--------~v~ImsYsaKy 201 (328)
T 1w1z_A 146 DETVEVLQKMAVSHAEAGADFVS-PSDMMDGR---------------IGAIREALDETDHS--------DVGILSYAAKY 201 (328)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEE-ECSCCTTH---------------HHHHHHHHHHTTCT--------TSEEEEEEEEB
T ss_pred HHHHHHHHHHHHHHHHcCCCeEe-cccccccH---------------HHHHHHHHHhCCCC--------CceeeehhHHH
Confidence 66777888888888999999654 66655433 33444456667764 68999988888
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-.+.|-....-+..+.+ + +....++.++++...+ ++|||.|..
T Consensus 202 ASafYGPFRdAa~Sap~fGDrktYQ--m----------dpaN~~EAlrE~~~Di-~EGAD~vMV 252 (328)
T 1w1z_A 202 ASSFYGPFRDALHSAPQFGDKSTYQ--M----------NPANTEEAMKEVELDI-VEGADIVMV 252 (328)
T ss_dssp CCTTCHHHHHHTTCCCCCSCSTTTS--B----------CTTCSHHHHHHHHHHH-HHTCSEEEE
T ss_pred hhhccchHHHHhccCCCCCCccccC--C----------CCCCHHHHHHHHHhhH-HhCCCEEEE
Confidence 9999988766666543322322211 1 1111345566665555 469997654
No 207
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=44.88 E-value=82 Score=28.74 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc----h-hhHHHHhccCCCCee---ccHHH-HHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 156 RHKRAFLEQAGARCIVMPCHIS----H-AWHGDVSEGCSIPFL---HVGEC-VAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTA----H-~~~d~L~~~~~vPvl---~Ivea-t~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
.+.++..++.||++|=+.+-.- + ..+..+++.+++||+ .|++. -+..+...|.. .|-|.++.-
T Consensus 68 ~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD--------~VlL~~~~l 139 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGAS--------AALLIVALL 139 (254)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCS--------EEEEEHHHH
T ss_pred HHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCC--------EEEECccch
Confidence 4556678889999997754321 1 127788889999943 11222 45667777764 666666544
Q ss_pred hhchHHHHHHHH---hcCCcee
Q 017159 227 TLSAGFYQEKLQ---NQGFEVV 245 (376)
Q Consensus 227 T~~s~~Y~~~L~---~~G~evv 245 (376)
+ ..+++.++ ..|+++.
T Consensus 140 ~---~~l~~l~~~a~~lGl~~l 158 (254)
T 1vc4_A 140 G---ELTGAYLEEARRLGLEAL 158 (254)
T ss_dssp G---GGHHHHHHHHHHHTCEEE
T ss_pred H---HHHHHHHHHHHHCCCeEE
Confidence 3 34555554 5687775
No 208
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=44.25 E-value=69 Score=30.91 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=.. .|-.++++.+..++||||..+ +.+. .+++. |- -.+.+|+++|=
T Consensus 115 l~DTarvLs~y-~D~IviR~~-~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~TI~E~~G~-----l~glkva~vGD 187 (340)
T 4ep1_A 115 VSDTAKVLSHY-IDGIMIRTF-SHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNT-----FKGIKLAYVGD 187 (340)
T ss_dssp TTHHHHHHHHH-CSEEEEECS-CHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecC-ChhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCC-----CCCCEEEEECC
Confidence 45556778888 999999987 477789999999999998654 1111 22222 21 23569999986
Q ss_pred chhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
..- -.+.+-..+...|.++.+..++
T Consensus 188 ~~n-va~Sl~~~~~~~G~~v~~~~P~ 212 (340)
T 4ep1_A 188 GNN-VCHSLLLASAKVGMHMTVATPV 212 (340)
T ss_dssp CCH-HHHHHHHHHHHHTCEEEEECCT
T ss_pred Cch-hHHHHHHHHHHcCCEEEEECCc
Confidence 422 2233555667779888765543
No 209
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=44.00 E-value=45 Score=29.09 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=44.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 83 NTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 83 k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
..+||| ||..|-....++..+....-+-. .++-+.|--..| +.+ .+.++..
T Consensus 12 ~~V~Ii--mGS~SD~~v~~~a~~~L~~~Gi~-~dv~V~SaHR~p----------------------~~l----~~~~~~a 62 (170)
T 1xmp_A 12 SLVGVI--MGSTSDWETMKYACDILDELNIP-YEKKVVSAHRTP----------------------DYM----FEYAETA 62 (170)
T ss_dssp CSEEEE--ESSGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTSH----------------------HHH----HHHHHHT
T ss_pred CcEEEE--ECcHHHHHHHHHHHHHHHHcCCC-EEEEEEeccCCH----------------------HHH----HHHHHHH
Confidence 357777 66666666688777766543322 223233321111 233 2233445
Q ss_pred HHcCCcEEEEe-CCCchhhHHHHhccCCCCeecc
Q 017159 163 EQAGARCIVMP-CHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 163 ~~~Gad~IVIa-CNTAH~~~d~L~~~~~vPvl~I 195 (376)
++.|+++|+.. --.+| .---+...+..|||++
T Consensus 63 ~~~g~~ViIa~AG~aa~-LpgvvA~~t~~PVIgV 95 (170)
T 1xmp_A 63 RERGLKVIIAGAGGAAH-LPGMVAAKTNLPVIGV 95 (170)
T ss_dssp TTTTCCEEEEEEESSCC-HHHHHHTTCCSCEEEE
T ss_pred HhCCCcEEEEECCchhh-hHHHHHhccCCCEEEe
Confidence 66788854333 33333 3456667788898886
No 210
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=43.93 E-value=1e+02 Score=29.42 Aligned_cols=106 Identities=16% Similarity=0.280 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-...++|||+|. |+.-+.-- +.++-+.+-+.|+. .|.||+=.+-.
T Consensus 140 D~Tl~~Lak~Als~A~AGAdiVA-PSdMMDGr---------------V~aIR~aLd~~G~~--------~v~ImsYsaKy 195 (323)
T 1l6s_A 140 DATLENLGKQAVVAAAAGADFIA-PSAAMDGQ---------------VQAIRQALDAAGFK--------DTAIMSYSTKF 195 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEE-ECSCCTTH---------------HHHHHHHHHHTTCT--------TCEEBCCCEEB
T ss_pred HHHHHHHHHHHHHHHHcCCCeEe-cccccccH---------------HHHHHHHHHhCCCC--------CceeeehhHHH
Confidence 67778888888888999999654 66655433 33444456667764 68999988888
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-.+.|-... -+..+.+ + ++...++.++++...+ ++|||.|..
T Consensus 196 ASafYGPFRdAa~Sap~-GDRktYQ--m----------dpaN~~EAlre~~~Di-~EGAD~vMV 245 (323)
T 1l6s_A 196 ASSFYGPFREAAGSALK-GDRKSYQ--M----------NPMNRREAIRESLLDE-AQGADCLMV 245 (323)
T ss_dssp CCSCCHHHHHHHTCCCS-SCCTTTS--B----------CTTCHHHHHHHHHHHH-HTTCSBEEE
T ss_pred hHHhhHHHHHHhcCCCC-CCccccC--C----------CCCCHHHHHHHHHhhH-HhCCceEEE
Confidence 89998876655554332 2222211 1 1112455667665555 579997665
No 211
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=43.35 E-value=1.4e+02 Score=28.90 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-------HHHHHHHH--HHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-------GECVAKEL--KEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-------veat~~~~--~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=+.. |..++++.+..++|||+. ..+.+... .+. |.+ .-.+.+|+++|=
T Consensus 115 l~DTarvLs~~-~D~IviR~~~-~~~~~~la~~s~vPVING~g~~~HPtQaL~Dl~Ti~e~~~~~---~l~gl~ia~vGD 189 (358)
T 4h31_A 115 MKDTARVLGRM-YDGIQYRGFG-QAIVEELGAFAGVPVWNGLTDEFHPTQILADFLTMLEHSQGK---ALADIQFAYLGD 189 (358)
T ss_dssp HHHHHHHHHHH-CSEEEEECSC-HHHHHHHHHHSSSCEEESCCSSCCHHHHHHHHHHHHHTTTTC---CGGGCEEEEESC
T ss_pred hhHHHHHhhcc-CceeEecccc-hhHHHHhhhhccCceECCCCcCCCchHHHHHHHHHHHHhcCC---CcCceEEEecCC
Confidence 55566778888 9999999874 777899999999999983 22333322 221 110 013468999985
Q ss_pred c--hhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 D--ATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~--~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
- .+.. .+-..+...|.++.+..++
T Consensus 190 ~~~~va~--S~~~~~~~~g~~v~~~~P~ 215 (358)
T 4h31_A 190 ARNNVGN--SLMVGAAKMGMDIRLVGPQ 215 (358)
T ss_dssp TTSHHHH--HHHHHHHHHTCEEEEESCG
T ss_pred CCcccch--HHHHHHHhcCceEEEeCCc
Confidence 2 2222 2445667779888876553
No 212
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=43.13 E-value=31 Score=34.23 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh--HHHHhcc-----CCCCeec
Q 017159 158 KRAFLEQAGARCIVMPCHISHAW--HGDVSEG-----CSIPFLH 194 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~--~d~L~~~-----~~vPvl~ 194 (376)
-++.|+++|||.+=++||+.-.. +.+|+++ +++|++.
T Consensus 43 QI~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~~vPLVA 86 (406)
T 4g9p_A 43 QVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVG 86 (406)
T ss_dssp HHHHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCCCCceEe
Confidence 34679999999999999997665 6777665 8899854
No 213
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=42.81 E-value=1.7e+02 Score=29.03 Aligned_cols=42 Identities=7% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecchhhc---hHHHHHHHHhcCCceee
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDATLS---AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~---s~~Y~~~L~~~G~evv~ 246 (376)
.+.++.++..|.+ +||++.++...- ...+++.+++.|+.+..
T Consensus 175 ~a~~~ll~~fgw~--------~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~ 219 (555)
T 2e4u_A 175 KAMAEILRFFNWT--------YVSTVASEGDYGETGIEAFEQEARLRNICIAT 219 (555)
T ss_dssp HHHHHHHHHTTCC--------EEEEEEESSTTHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHcCCe--------EEEEEEeeChHHHHHHHHHHHHHHHCCccEEE
Confidence 3455666655554 999999875322 23467778888987753
No 214
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=42.60 E-value=80 Score=27.90 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCcEEEEeCCCch-------hhHHHHhccCCCCeecc---H-HHHHHHHHHhcCCCCcCCCCceEEEeecc
Q 017159 157 HKRAFLEQAGARCIVMPCHISH-------AWHGDVSEGCSIPFLHV---G-ECVAKELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH-------~~~d~L~~~~~vPvl~I---v-eat~~~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
+.++.++++|+|.|-+-.-+.+ .++.++++.+++|++-- . ..-++.+.+.|.. .| ++++.
T Consensus 36 ~~a~~~~~~Gad~i~v~~~d~~~~~~~~~~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad--------~V-~lg~~ 106 (244)
T 1vzw_A 36 EAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCT--------RV-NLGTA 106 (244)
T ss_dssp HHHHHHHHTTCSEEEEEEHHHHHTSCCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCS--------EE-EECHH
T ss_pred HHHHHHHHcCCCEEEEecCchhhcCCChHHHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCC--------EE-EECch
Confidence 3446688899999977432221 44778888889998631 1 1235666666653 44 47776
Q ss_pred hhhchHHHHHHHHhcCCc
Q 017159 226 ATLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 226 ~T~~s~~Y~~~L~~~G~e 243 (376)
..-......+.++..|..
T Consensus 107 ~l~~p~~~~~~~~~~g~~ 124 (244)
T 1vzw_A 107 ALETPEWVAKVIAEHGDK 124 (244)
T ss_dssp HHHCHHHHHHHHHHHGGG
T ss_pred HhhCHHHHHHHHHHcCCc
Confidence 554445566667766633
No 215
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=42.53 E-value=38 Score=32.24 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=26.9
Q ss_pred CceEEEeecchhhchHHHHHHHHhcCCceeecCcc
Q 017159 216 GVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
.++|+|+|+ |||-+++ ...+..+|++|++.+..
T Consensus 6 ~~~VaViGa-G~MG~gi-A~~~a~~G~~V~l~D~~ 38 (319)
T 3ado_A 6 AGDVLIVGS-GLVGRSW-AMLFASGGFRVKLYDIE 38 (319)
T ss_dssp -CEEEEECC-SHHHHHH-HHHHHHTTCCEEEECSC
T ss_pred CCeEEEECC-cHHHHHH-HHHHHhCCCeEEEEECC
Confidence 358999999 9999985 56677889999998764
No 216
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=42.51 E-value=33 Score=32.31 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=38.6
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-----------HHHHhccCCCCee-----ccHHHHHHHHHHhcCC
Q 017159 158 KRAFLEQAGARCIVMPCHISHAW-----------HGDVSEGCSIPFL-----HVGECVAKELKEAKLK 209 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~-----------~d~L~~~~~vPvl-----~Iveat~~~~~~~g~k 209 (376)
+.++.++.|+|+++++--|+|=. +++|++.+++|++ ++-++-.+.+.+.|..
T Consensus 160 a~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vpLVlHGgSG~~~e~i~~ai~~Gv~ 227 (286)
T 1gvf_A 160 AKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVT 227 (286)
T ss_dssp HHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTTEE
T ss_pred HHHHHHHHCCCEEEeecCccccCcCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHCCCe
Confidence 34556778999999999999952 5667777788876 5666666667776653
No 217
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=42.43 E-value=1.2e+02 Score=29.21 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-...++|||+|. |+.-+.- -+.++-+.+-+.|+. .||.||+=.+-.
T Consensus 144 D~Tl~~La~~Als~A~AGAdiVA-PSdMMDG---------------rV~aIR~aLd~~G~~-------~~v~ImsYsaKy 200 (330)
T 1pv8_A 144 EESRQRLAEVALAYAKAGCQVVA-PSDMMDG---------------RVEAIKEALMAHGLG-------NRVSVMSYSAKF 200 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEE-ECC--CC---------------HHHHHHHHHHHTTCT-------TTCEEBCCCEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCeee-ccccccc---------------HHHHHHHHHHhCCCc-------CCceEeehhHHH
Confidence 67778888888888999999654 6655443 234444556667764 259999998888
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-.+.|-....-+..+. .. +....++.++++...+ ++|||.|+.
T Consensus 201 ASafYGPFRdAa~Sap~~GDRktY---------Qm---dpaN~~EAlre~~~Di-~EGAD~vMV 251 (330)
T 1pv8_A 201 ASCFYGPFRDAAKSSPAFGDRRCY---------QL---PPGARGLALRAVDRDV-REGADMLMV 251 (330)
T ss_dssp CCGGGHHHHHCC----------------------C---CTTCHHHHHHHHHHHH-HTTCSBEEE
T ss_pred hHhhhhHHHHHHhcCCCCCCcccc---------CC---CCCCHHHHHHHHHhhH-HhCCceEEE
Confidence 999998765554433222121111 11 1122456677766555 579997654
No 218
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=42.40 E-value=22 Score=36.17 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCchhhHHH----Hhcc-----CCCCeeccHHHHHHHH
Q 017159 152 SQNLRHKRAFLEQAGARCIVMPCHISHAWHGD----VSEG-----CSIPFLHVGECVAKEL 203 (376)
Q Consensus 152 ~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~----L~~~-----~~vPvl~Iveat~~~~ 203 (376)
.+...+.++.+++.|||+||-+|-.=+.-++. +.+. .++|++|+++-.+.++
T Consensus 434 ~~i~~~k~~~a~~tgAd~IvT~Cp~C~~~l~~~q~~~~k~~g~~~~~ipV~h~~eLLa~Al 494 (514)
T 3kwl_A 434 LLQCAHLRYLGIDLGADFLIAHSLGLFYAFENLSLKASKIYKRDNDNTPTLFLPQIALMAM 494 (514)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESCHHHHHHHTTTHHHHHTTSCSCCCCCCEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCEEEecCHHHHHHHHhHhHHHHHhhCCCCCCCcEeeHHHHHHHHc
Confidence 34455556778889999999999875555554 3322 4799999998876653
No 219
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=42.39 E-value=83 Score=26.78 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHHHcCCcE
Q 017159 90 GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLEQAGARC 169 (376)
Q Consensus 90 GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~~~Gad~ 169 (376)
|+|+..|.+++.++.+.+.. .+|.+|++.- +..++.......+. +++.+.+...++.+...|+..
T Consensus 57 Gi~G~tt~~~l~r~~~~v~~---~~Pd~vvi~~----------G~ND~~~~~~~~~~--~~~~~~l~~ii~~~~~~~~~i 121 (209)
T 4hf7_A 57 GISGQTSYQFLLRFREDVIN---LSPALVVINA----------GTNDVAENTGAYNE--DYTFGNIASMAELAKANKIKV 121 (209)
T ss_dssp ECTTCCHHHHHHHHHHHTGG---GCCSEEEECC----------CHHHHTTSSSSCCH--HHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCcccHHHHHHHHHHHHHh---cCCCEEEEEe----------CCCcCccccccccH--HHHHHHHHHhhHHHhccCceE
Confidence 78888888888887664432 2467776542 11221111111222 566777788888888889998
Q ss_pred EEEe
Q 017159 170 IVMP 173 (376)
Q Consensus 170 IVIa 173 (376)
+++.
T Consensus 122 il~~ 125 (209)
T 4hf7_A 122 ILTS 125 (209)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8763
No 220
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=41.89 E-value=1.3e+02 Score=29.02 Aligned_cols=91 Identities=10% Similarity=0.077 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHhcCCCCc-CCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEAKLKPLE-AGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~g~k~~~-~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=... |-.++++.+..++||||..+ +.+. .+.+.. +.. .-.+.+|+++|=
T Consensus 86 l~DTarvLs~y-~D~IviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~TI~E~~--~~G~~l~glkva~vGD 161 (355)
T 4a8p_A 86 IEDTSRVLSRL-VDILMARVER-HHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHL--PEGKKLEDCKVVFVGD 161 (355)
T ss_dssp HHHHHHHHTTT-CSEEEEECSS-HHHHHHHHHHCSSCEEECCCSSCCHHHHHHHHHHHHHTC--CTTCCGGGCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecCc-HHHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHh--hcCCCCCCCEEEEECC
Confidence 55556778877 9999999874 77788998889999998743 2222 233321 000 013468999987
Q ss_pred chhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
..-+ .+.+-..+...|.++.+..++
T Consensus 162 ~~rv-a~Sl~~~~~~~G~~v~~~~P~ 186 (355)
T 4a8p_A 162 ATQV-CFSLGLITTKMGMNFVHFGPE 186 (355)
T ss_dssp CCHH-HHHHHHHHHHTTCEEEEECCT
T ss_pred Cchh-HHHHHHHHHHcCCEEEEECCC
Confidence 5222 233556677789888765543
No 221
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=41.52 E-value=90 Score=29.85 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=18.9
Q ss_pred ccccCCeEEEEcCCChHHHHHHHHHHHHHh
Q 017159 78 LLNQANTIGIIGGVSVSSTLNFLGKLVWYS 107 (376)
Q Consensus 78 ~~~~~k~IGIIGGmGp~AT~~f~~kI~~~~ 107 (376)
++.+.++||.|||+-......|++-..+..
T Consensus 145 ~~tk~~kIGfVgg~~~p~v~~~~~GF~~G~ 174 (356)
T 3s99_A 145 KMSKKGIAGYIGSVPVPEVVQGINSFMLGA 174 (356)
T ss_dssp HHCSSCEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECCCccHHHHHHHHHHHHHH
Confidence 455678999999985444544544444433
No 222
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=41.45 E-value=65 Score=26.69 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=40.8
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHHHcCCcE
Q 017159 90 GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLEQAGARC 169 (376)
Q Consensus 90 GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~~~Gad~ 169 (376)
|+|...+.+++.++.+.... ..+++|++.- +..+........+. +++.+.+.+.++.+.+.|+..
T Consensus 53 g~~G~~~~~~~~~~~~~~~~---~~pd~vvi~~----------G~ND~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~v 117 (204)
T 3p94_A 53 GISGQTTSEMLVRFRQDVIN---LKPKAVVILA----------GINDIAHNNGVIAL--ENVFGNLVSMAELAKANHIKV 117 (204)
T ss_dssp ECTTCCHHHHHHHHHHHTGG---GCEEEEEEEC----------CHHHHTTTTSCCCH--HHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCcccHHHHHHHHHHHHHh---CCCCEEEEEe----------ecCccccccCCCCH--HHHHHHHHHHHHHHHhCCCeE
Confidence 56666676777766554432 2356666542 11221111111222 677888888888888889998
Q ss_pred EEEeC
Q 017159 170 IVMPC 174 (376)
Q Consensus 170 IVIaC 174 (376)
+++..
T Consensus 118 il~~~ 122 (204)
T 3p94_A 118 IFCSV 122 (204)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 88743
No 223
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=41.30 E-value=1.2e+02 Score=26.79 Aligned_cols=77 Identities=21% Similarity=0.178 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh--------hHHHHhccCCCCeecc-----HHHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 157 HKRAFLEQAGARCIVMPCHISHA--------WHGDVSEGCSIPFLHV-----GECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~--------~~d~L~~~~~vPvl~I-----veat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
+.++.++++|+|.|.+-.-+++. .+.++++.+++|++-. .+. ++.+.+.|.. .| +++
T Consensus 34 ~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~-~~~~~~~Gad--------~V-~lg 103 (253)
T 1thf_D 34 ELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFET-ASELILRGAD--------KV-SIN 103 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHH-HHHHHHTTCS--------EE-EES
T ss_pred HHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHH-HHHHHHcCCC--------EE-EEC
Confidence 34467889999998776554331 1466778889998842 233 5555666653 44 577
Q ss_pred cchhhchHHHHHHHHhcCCc
Q 017159 224 TDATLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~e 243 (376)
+...-....+.+.++.+|.+
T Consensus 104 ~~~l~~p~~~~~~~~~~g~~ 123 (253)
T 1thf_D 104 TAAVENPSLITQIAQTFGSQ 123 (253)
T ss_dssp HHHHHCTHHHHHHHHHHCGG
T ss_pred hHHHhChHHHHHHHHHcCCC
Confidence 76655555677777776653
No 224
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=41.08 E-value=87 Score=27.53 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCcEEEEeCCCc-------hhhHHHHhccCCCCeec--cH--HHHHHHHHHhcCCCCcCCCCceEEEeecc
Q 017159 157 HKRAFLEQAGARCIVMPCHIS-------HAWHGDVSEGCSIPFLH--VG--ECVAKELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTA-------H~~~d~L~~~~~vPvl~--Iv--eat~~~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
+.++.++++|+|.|-+-.-+. ...+.++++.+++|++- ++ ..-++.+.+.|.. .| ++++.
T Consensus 35 ~~a~~~~~~Gad~i~v~~~d~~~~~~~~~~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad--------~V-~lg~~ 105 (244)
T 2y88_A 35 DAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCA--------RV-NVGTA 105 (244)
T ss_dssp HHHHHHHHTTCSEEEEEEHHHHTTSCCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCS--------EE-EECHH
T ss_pred HHHHHHHHcCCCEEEEEcCcccccCCChHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCC--------EE-EECch
Confidence 345568889999998853211 14577888888999863 11 1235666666653 44 57776
Q ss_pred hhhchHHHHHHHHhcCCc
Q 017159 226 ATLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 226 ~T~~s~~Y~~~L~~~G~e 243 (376)
..-......+.++..|..
T Consensus 106 ~l~~p~~~~~~~~~~g~~ 123 (244)
T 2y88_A 106 ALENPQWCARVIGEHGDQ 123 (244)
T ss_dssp HHHCHHHHHHHHHHHGGG
T ss_pred HhhChHHHHHHHHHcCCC
Confidence 554444566666666633
No 225
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=40.92 E-value=72 Score=29.15 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=34.4
Q ss_pred CCceEEEeecchhhchHHHH-------HHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCC
Q 017159 215 SGVRIGVLATDATLSAGFYQ-------EKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAV 287 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~s~~Y~-------~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~ga 287 (376)
..++||++-....+...+|. +.++++|+++++-.... +.+ .-.+.++.+..+++
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---------------~~~----~~~~~~~~l~~~~v 120 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKH---------------SAE----EERQAIQYLLDLRC 120 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTT---------------SHH----HHHHHHHHHHHTTC
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCC---------------ChH----HHHHHHHHHHhCCC
Confidence 34689998775224444554 34556677776543210 100 11223455666788
Q ss_pred CEEEECCCc
Q 017159 288 NAVIIGSDE 296 (376)
Q Consensus 288 DaVILGCTE 296 (376)
|+||+..+.
T Consensus 121 dgiIi~~~~ 129 (338)
T 3dbi_A 121 DAIMIYPRF 129 (338)
T ss_dssp SEEEECCSS
T ss_pred CEEEEeCCC
Confidence 888886654
No 226
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=40.87 E-value=84 Score=28.02 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=35.2
Q ss_pred CceEEEeecchhh--ch-HH---HHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCE
Q 017159 216 GVRIGVLATDATL--SA-GF---YQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNA 289 (376)
Q Consensus 216 ~~rVGlLaT~~T~--~s-~~---Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDa 289 (376)
.++||++-...+- -. .+ .++.++++|+.+++-... ++.+ ...+.++.+..+++|+
T Consensus 13 s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---------------~~~~----~~~~~~~~l~~~~vdG 73 (301)
T 3miz_A 13 SNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTG---------------GSSE----REVEIWKMFQSHRIDG 73 (301)
T ss_dssp CCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECT---------------TCHH----HHHHHHHHHHHTTCSE
T ss_pred CCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCC---------------CChH----HHHHHHHHHHhCCCCE
Confidence 4589988764320 11 11 345667778887764321 0111 1133455566789999
Q ss_pred EEECCCc
Q 017159 290 VIIGSDE 296 (376)
Q Consensus 290 VILGCTE 296 (376)
||+..+.
T Consensus 74 iIi~~~~ 80 (301)
T 3miz_A 74 VLYVTMY 80 (301)
T ss_dssp EEEEEEE
T ss_pred EEEecCC
Confidence 9987754
No 227
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=40.56 E-value=1e+02 Score=30.13 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=46.9
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc-----HHHHHHHHHHhcCCCCcCCCCceEEEeecchh-----h
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV-----GECVAKELKEAKLKPLEAGSGVRIGVLATDAT-----L 228 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I-----veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T-----~ 228 (376)
.+.+....+|.|++.++-.+-. ..+....++ .+.+ ...+++++.+.|+| +|+.++.+.. .
T Consensus 104 i~~lkekrvDgIIi~~~~~ed~-~~i~~~~di-~V~~Dn~~Ggy~A~~~Li~~Ghk--------~Ia~Isgp~~~~~~~~ 173 (371)
T 3qi7_A 104 LQKVKEKRPEIITISAPMGDDK-NQLSQFVDV-NLGVSAEERGKVLAERSKEMGAK--------AFIHYASTDDLKDVNI 173 (371)
T ss_dssp HHHHHHHCTTSEEEESSCCSCH-HHHHHHSSE-EEECCHHHHHHHHHHHHHHTTCS--------CEEEEEETTGGGSHHH
T ss_pred HHHHHhcCCCEEEEeccccccc-hhhcccCce-EEEeChHHHHHHHHHHHHHCCCC--------EEEEEeccccccchhH
Confidence 3456677899887776522211 112122333 3333 33467888888876 9998876432 2
Q ss_pred --chHHHHHHHHhcCCcee
Q 017159 229 --SAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 229 --~s~~Y~~~L~~~G~evv 245 (376)
+-.-|++.++++|++..
T Consensus 174 ~~R~~Gyk~Al~e~Gi~~~ 192 (371)
T 3qi7_A 174 AKRLEMIKETCKNIGLPFV 192 (371)
T ss_dssp HHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHcCCCce
Confidence 22339999999999765
No 228
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=40.28 E-value=31 Score=32.53 Aligned_cols=52 Identities=12% Similarity=0.175 Sum_probs=37.1
Q ss_pred HHHHHHHcCCcEEEEeCCCchhh-----------HHHHhccCCCCee-----ccHHHHHHHHHHhcCC
Q 017159 158 KRAFLEQAGARCIVMPCHISHAW-----------HGDVSEGCSIPFL-----HVGECVAKELKEAKLK 209 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~-----------~d~L~~~~~vPvl-----~Iveat~~~~~~~g~k 209 (376)
+.++.++.|+|+++++--|+|=. +++|++.+++|++ ++-+.-.+.+.+.|..
T Consensus 164 a~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v~vpLVlHGgSG~~~e~i~~ai~~Gv~ 231 (288)
T 3q94_A 164 CKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTS 231 (288)
T ss_dssp HHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHHCSCEEECCCTTCCHHHHHHHHHTTEE
T ss_pred HHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 34556778999999999999953 4566667777765 5556666666666653
No 229
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=40.25 E-value=64 Score=28.90 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=53.5
Q ss_pred ccCCeEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecCCcchh--HHhhhchhhhccccccCcchHHHHHHHH
Q 017159 80 NQANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCNDPALNE--ELFHASVHSLKSKTVQLDHIRGAVSQNL 155 (376)
Q Consensus 80 ~~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~p~ipd--~l~~~s~~~~~~~~~~~~~~~~~i~~~l 155 (376)
..+++|+|+- |-|.- ++.|.+....++. ..+..|+.|+|+-.. +-..++.|...-.....+ +
T Consensus 6 ~~~~ri~vl~SG~gsn-----l~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~~~~---~------ 71 (215)
T 3kcq_A 6 KKELRVGVLISGRGSN-----LEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPLD---I------ 71 (215)
T ss_dssp -CCEEEEEEESSCCHH-----HHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBTTBC---H------
T ss_pred CCCCEEEEEEECCcHH-----HHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcccCC---h------
Confidence 4466888875 77765 6667776654432 345566666666432 222233343211110111 1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
.+..+.|++.++|+||++... +..-+.+-+.....+||+
T Consensus 72 ~~~~~~L~~~~~Dlivlagy~-~IL~~~~l~~~~~~~iNi 110 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAGFM-SILPEKFVTDWHHKIINI 110 (215)
T ss_dssp HHHHHHHHHTTCSEEEESSCC-SCCCHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHhCCCEEEEeCCc-eEeCHHHHhhccCCeEEE
Confidence 223356778999999998763 444344444444455555
No 230
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=40.16 E-value=52 Score=30.86 Aligned_cols=104 Identities=9% Similarity=0.074 Sum_probs=55.7
Q ss_pred cCCeEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecC-CcchhHHhhhchhhhccccccCcchHHHHHHHHHH
Q 017159 81 QANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCND-PALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRH 157 (376)
Q Consensus 81 ~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~-p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~ 157 (376)
++++|+|+. |-|.- ++.|.+....+.. ..+..|+.|+ |+...+-..++.|...-.... ..+++.- .+
T Consensus 88 ~~~ri~vl~Sg~g~n-----l~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~~gIp~~~~~~~~--~~r~~~~---~~ 157 (288)
T 3obi_A 88 TRRKVMLLVSQSDHC-----LADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNK--DTRRQQE---AA 157 (288)
T ss_dssp SCEEEEEEECSCCHH-----HHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTTTTCCEEECCCCT--TTHHHHH---HH
T ss_pred CCcEEEEEEcCCCCC-----HHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHHcCCCEEEeCCCc--ccHHHHH---HH
Confidence 456788886 77753 6667766654432 3577788888 554332222233332100000 1112211 22
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
..+.|++.++|+||++... +..-+.+-+...-.+||+
T Consensus 158 ~~~~l~~~~~Dlivlagy~-~il~~~~l~~~~~~~iNi 194 (288)
T 3obi_A 158 ITALIAQTHTDLVVLARYM-QILSDEMSARLAGRCINI 194 (288)
T ss_dssp HHHHHHHHTCCEEEESSCC-SCCCHHHHHHTTTSEEEE
T ss_pred HHHHHHhcCCCEEEhhhhh-hhCCHHHHhhhcCCeEEe
Confidence 3456788999999999863 444344444444445554
No 231
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=40.12 E-value=92 Score=27.12 Aligned_cols=79 Identities=22% Similarity=0.073 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCeeccH----HHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 156 RHKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFLHVG----ECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl~Iv----eat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
.+.++.+++.|+|.+.+..-+.+ ..+.++++.+++|++-.. ...++.+.+.|.. .-.++
T Consensus 36 ~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad---------~V~i~ 106 (253)
T 1h5y_A 36 VEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGAD---------KVSVN 106 (253)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCS---------EEEES
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCC---------EEEEC
Confidence 44556788999998876533322 125677777889987432 1234566666653 33466
Q ss_pred cchhhchHHHHHHHHhcCCc
Q 017159 224 TDATLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~e 243 (376)
+...-......+..+.+|.+
T Consensus 107 ~~~~~~~~~~~~~~~~~g~~ 126 (253)
T 1h5y_A 107 TAAVRNPQLVALLAREFGSQ 126 (253)
T ss_dssp HHHHHCTHHHHHHHHHHCGG
T ss_pred hHHhhCcHHHHHHHHHcCCC
Confidence 65544455566666666654
No 232
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=39.99 E-value=1.9e+02 Score=27.68 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHH
Q 017159 84 TIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLE 163 (376)
Q Consensus 84 ~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~ 163 (376)
.||.+| ||... ...+++.-...+.+..-..++.+|+.-.+++ +.+.+.+.+.++.+.
T Consensus 151 ligf~g--aP~Tl---a~~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll------------------~~i~~~~~~y~~~qi 207 (368)
T 4exq_A 151 LIGFSG--SPWTL---ACYMVEGGGSDDFRTVKSMAYARPDLMHRIL------------------DVNAQAVAAYLNAQI 207 (368)
T ss_dssp EEEEEE--CHHHH---HHHHHHTBCCSSCHHHHHHHHHCHHHHHHHH------------------HHHHHHHHHHHHHHH
T ss_pred EEEeCC--cHHHH---HHHHHcCCCcchHHHHHHHHHhCHHHHHHHH------------------HHHHHHHHHHHHHHH
Q ss_pred HcCCcEEEEeCCCchh------------hHHHHhccCC-------CCeeccHHHH---HHHHHHhcCCCCcCCCCceEEE
Q 017159 164 QAGARCIVMPCHISHA------------WHGDVSEGCS-------IPFLHVGECV---AKELKEAKLKPLEAGSGVRIGV 221 (376)
Q Consensus 164 ~~Gad~IVIaCNTAH~------------~~d~L~~~~~-------vPvl~Iveat---~~~~~~~g~k~~~~~~~~rVGl 221 (376)
++|||+|-|.-..+.. ++.++-+.+. +|+++...-. .+.+.+.|.. +
T Consensus 208 ~aGad~i~ifDs~~~~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~g~~~~l~~l~~~g~d-----------~ 276 (368)
T 4exq_A 208 EAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGGGLWLEDLAATGVD-----------A 276 (368)
T ss_dssp HHTCSEEEEEETTGGGSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEETTCGGGHHHHHTSSCS-----------E
T ss_pred HhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHHHHHHHHhCCC-----------E
Q ss_pred eecchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEECCC
Q 017159 222 LATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIGSD 295 (376)
Q Consensus 222 LaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILGCT 295 (376)
++...++.-..-++.+ |-.+.+-..-+..... |..++.++.++++++.+...+--.+=+||+
T Consensus 277 i~~d~~~dl~~ak~~~---g~~~~l~Gnldp~~L~---------gt~e~I~~~v~~~l~~~g~~~g~I~n~Ghg 338 (368)
T 4exq_A 277 VGLDWTVNLGRARERV---AGRVALQGNLDPTILF---------APPEAIRAEARAVLDSYGNHPGHVFNLGHG 338 (368)
T ss_dssp EECCTTSCHHHHHHHH---TTSSEEEEEECGGGGG---------SCHHHHHHHHHHHHHHHCSCSCEEEEESSC
T ss_pred EeeCCCCCHHHHHHHh---CCCEEEEECCCHHHhC---------CCHHHHHHHHHHHHHHhCCCCCEEEeCCCC
No 233
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=38.77 E-value=2e+02 Score=27.14 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCcEEEE
Q 017159 155 LRHKRAFLEQAGARCIVM 172 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVI 172 (376)
..+.++.|.++|+|.|=+
T Consensus 32 k~~i~~~L~~~Gvd~IEv 49 (345)
T 1nvm_A 32 VRAIARALDKAKVDSIEV 49 (345)
T ss_dssp HHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 345567788899999966
No 234
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=38.68 E-value=1.5e+02 Score=26.06 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 017159 156 RHKRAFLEQAGARCIVMP 173 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIa 173 (376)
.+.++.+++. +|.|=+.
T Consensus 22 ~~~a~~~~~~-ad~iel~ 38 (248)
T 1geq_A 22 LNFLLALDEY-AGAIELG 38 (248)
T ss_dssp HHHHHHHGGG-BSCEEEE
T ss_pred HHHHHHHHHc-CCEEEEC
Confidence 3344556667 8877555
No 235
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=38.39 E-value=46 Score=28.72 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=44.7
Q ss_pred cccccCCeEEEEc-CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecC---Ccch--hHHhhhchhhhccccccCcchHHH
Q 017159 77 SLLNQANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCND---PALN--EELFHASVHSLKSKTVQLDHIRGA 150 (376)
Q Consensus 77 ~~~~~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~---p~ip--d~l~~~s~~~~~~~~~~~~~~~~~ 150 (376)
..|.+.++|-++| |-+...+.+|..++...-. +....++ +.+. |-++.-| .+... .+
T Consensus 42 ~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~-------~~~~~~~~~~~~~~~~DvvI~iS-------~SG~t---~~ 104 (200)
T 1vim_A 42 KLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGY-------TVYVVGETVTPRITDQDVLVGIS-------GSGET---TS 104 (200)
T ss_dssp HHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTC-------CEEETTSTTCCCCCTTCEEEEEC-------SSSCC---HH
T ss_pred HHHhcCCEEEEEEecHHHHHHHHHHHHHHhcCC-------eEEEeCCccccCCCCCCEEEEEe-------CCCCc---HH
Confidence 4455678899998 6666677777777755321 1111111 1111 1111111 01111 34
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchh
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHISHA 179 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTAH~ 179 (376)
+ .+.++.+.+.|+..|+|.+|.-++
T Consensus 105 ~----i~~~~~ak~~g~~vI~IT~~~~s~ 129 (200)
T 1vim_A 105 V----VNISKKAKDIGSKLVAVTGKRDSS 129 (200)
T ss_dssp H----HHHHHHHHHHTCEEEEEESCTTSH
T ss_pred H----HHHHHHHHHCCCeEEEEECCCCCh
Confidence 3 344566788999999999987554
No 236
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=37.91 E-value=36 Score=30.27 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCeecc-----HHHHHHHHHHhcCCCCcCCCCceEEEe
Q 017159 156 RHKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFLHV-----GECVAKELKEAKLKPLEAGSGVRIGVL 222 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl~I-----veat~~~~~~~g~k~~~~~~~~rVGlL 222 (376)
.+.++.++++|+|.|.+..-++. ..+.+++ .+++|++-. .+. ++.+.+.|.. .| ++
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~-~~~~~~~Gad--------~V-~l 101 (241)
T 1qo2_A 33 VELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS-EFAEHIQIGGGIRSLDY-AEKLRKLGYR--------RQ-IV 101 (241)
T ss_dssp HHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG-GGGGGEEEESSCCSHHH-HHHHHHTTCC--------EE-EE
T ss_pred HHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH-hcCCcEEEECCCCCHHH-HHHHHHCCCC--------EE-EE
Confidence 34456688899999987542221 1145555 678998852 233 3445556653 45 57
Q ss_pred ecchhhchHHHHHHHHhcC
Q 017159 223 ATDATLSAGFYQEKLQNQG 241 (376)
Q Consensus 223 aT~~T~~s~~Y~~~L~~~G 241 (376)
++..--+..++.+. +.+|
T Consensus 102 g~~~l~~p~~~~~~-~~~g 119 (241)
T 1qo2_A 102 SSKVLEDPSFLKSL-REID 119 (241)
T ss_dssp CHHHHHCTTHHHHH-HTTT
T ss_pred CchHhhChHHHHHH-HHcC
Confidence 77654455556666 7777
No 237
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}
Probab=37.85 E-value=1.6e+02 Score=28.57 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCC-------ch-h--hHHHHhccCCCCee
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHI-------SH-A--WHGDVSEGCSIPFL 193 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNT-------AH-~--~~d~L~~~~~vPvl 193 (376)
++++....+-++..+..|+..|+|+.-. +. | +|+.+-.+++-|||
T Consensus 133 ~~V~~AY~EQ~~~Ve~~G~~~ILMASRaLA~~A~~pdDY~~VY~~vL~q~~~PVI 187 (396)
T 4dnh_A 133 DDILAAYESQIEAIEAEGGRIILMASRALAAAAKGPEDYIRVYDRVLSQVKEPVI 187 (396)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEECCCHHHHHHCCSHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEehhHHHHHHhCCHHHHHHHHHHHHHhcCCCEE
Confidence 5677777777888999999999998632 11 1 37777777777765
No 238
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=37.64 E-value=1e+02 Score=29.97 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCC---------CchhhHHHHhccCCCCeeccHHH------HHH--HHHHh-cCCCCcCCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCH---------ISHAWHGDVSEGCSIPFLHVGEC------VAK--ELKEA-KLKPLEAGSG 216 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCN---------TAH~~~d~L~~~~~vPvl~Ivea------t~~--~~~~~-g~k~~~~~~~ 216 (376)
+.+.++-|.+. +|+|||=+. -.|-.++++.+..++||||..+- .+. .+.+. |. + .-.+
T Consensus 115 l~DTarvLs~y-~D~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINag~g~HPtQaLaDl~TI~E~~g~-~--~l~g 190 (359)
T 1zq6_A 115 IAEVARVLGRY-VDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGT-P--DLRG 190 (359)
T ss_dssp HHHHHHHHHHH-CSEEEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEEESSSSCCHHHHHHHHHHHHHHHTS-S--CCTT
T ss_pred HHHHHHHHHHh-CcEEEEeccccccccccccchHHHHHHHHhCCCCEEeCCCCCCcHHHHHHHHHHHHHhCC-C--cccC
Confidence 55566778888 999999988 14667888888899999987652 111 22222 21 0 0124
Q ss_pred ce--EEEeecc---hhhchHHHHHHHHhcCCceeecCcc
Q 017159 217 VR--IGVLATD---ATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 217 ~r--VGlLaT~---~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
.+ |+++|-. +..-.+-+-..+...|.++.+..++
T Consensus 191 lkvvva~vGDl~~~~nrva~Sl~~~~~~~G~~v~~~~P~ 229 (359)
T 1zq6_A 191 KKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPT 229 (359)
T ss_dssp CEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CeeEEEEEecccccccchHHHHHHHHHHcCCEEEEEcCc
Confidence 58 8888761 1222234566677889888765544
No 239
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=37.50 E-value=51 Score=29.10 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=43.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 83 NTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 83 k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
..+||| ||..|-....++..+....-+-. .++-+.|--..| +.+ .+.++..
T Consensus 14 ~~V~Ii--mGS~SD~~v~~~a~~~L~~~Gi~-~dv~V~SaHR~p----------------------~~l----~~~~~~a 64 (183)
T 1o4v_A 14 PRVGII--MGSDSDLPVMKQAAEILEEFGID-YEITIVSAHRTP----------------------DRM----FEYAKNA 64 (183)
T ss_dssp CEEEEE--ESCGGGHHHHHHHHHHHHHTTCE-EEEEECCTTTCH----------------------HHH----HHHHHHT
T ss_pred CeEEEE--eccHHHHHHHHHHHHHHHHcCCC-eEEEEEcccCCH----------------------HHH----HHHHHHH
Confidence 467777 66666666677776655543221 222222211111 233 2333445
Q ss_pred HHcCCcEEEEeC-CCchhhHHHHhccCCCCeeccH
Q 017159 163 EQAGARCIVMPC-HISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 163 ~~~Gad~IVIaC-NTAH~~~d~L~~~~~vPvl~Iv 196 (376)
++.|+++|+... -.+| .---+...+..|||++-
T Consensus 65 ~~~g~~ViIa~AG~aa~-LpgvvA~~t~~PVIgVP 98 (183)
T 1o4v_A 65 EERGIEVIIAGAGGAAH-LPGMVASITHLPVIGVP 98 (183)
T ss_dssp TTTTCCEEEEEEESSCC-HHHHHHHHCSSCEEEEE
T ss_pred HhCCCcEEEEecCcccc-cHHHHHhccCCCEEEee
Confidence 667888543333 3333 24456666788888763
No 240
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=36.68 E-value=88 Score=29.30 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
+.+.++.++++|+|+|.+...|
T Consensus 227 ~~~~a~~l~~~Gvd~i~vsn~~ 248 (336)
T 1f76_A 227 LIQVADSLVRHNIDGVIATNTT 248 (336)
T ss_dssp HHHHHHHHHHTTCSEEEECCCB
T ss_pred HHHHHHHHHHcCCcEEEEeCCc
Confidence 3455678899999999876543
No 241
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=36.59 E-value=1.1e+02 Score=26.20 Aligned_cols=83 Identities=14% Similarity=-0.007 Sum_probs=44.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHH
Q 017159 84 TIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLE 163 (376)
Q Consensus 84 ~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~ 163 (376)
++||| ||.-|-....++..+....-+-. .++-+.|-...| +.+.++. +..+
T Consensus 4 ~V~Ii--mgs~SD~~v~~~a~~~l~~~gi~-~ev~V~saHR~p----------------------~~~~~~~----~~a~ 54 (159)
T 3rg8_A 4 LVIIL--MGSSSDMGHAEKIASELKTFGIE-YAIRIGSAHKTA----------------------EHVVSML----KEYE 54 (159)
T ss_dssp EEEEE--ESSGGGHHHHHHHHHHHHHTTCE-EEEEECCTTTCH----------------------HHHHHHH----HHHH
T ss_pred eEEEE--ECcHHHHHHHHHHHHHHHHcCCC-EEEEEEcccCCH----------------------HHHHHHH----HHhh
Confidence 57777 66666666677776655543221 123223321111 3333333 3345
Q ss_pred Hc-CCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 164 QA-GARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 164 ~~-Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+. |+++|+....-+-..---+...+..|||++
T Consensus 55 ~~~~~~ViIa~AG~aa~LpgvvA~~t~~PVIgV 87 (159)
T 3rg8_A 55 ALDRPKLYITIAGRSNALSGFVDGFVKGATIAC 87 (159)
T ss_dssp TSCSCEEEEEECCSSCCHHHHHHHHSSSCEEEC
T ss_pred hcCCCcEEEEECCchhhhHHHHHhccCCCEEEe
Confidence 54 688765555443333456666788898886
No 242
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=36.51 E-value=2.2e+02 Score=27.16 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHHH--HHHhcCCCCcCCCCceEEEeecc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAKE--LKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~~--~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
+.+.++-|.+. +|+|||=.. .|-.++++.+..++||||... +.+.. +++..-++ -.+.+|+++|-.
T Consensus 90 l~DTarvLs~~-~D~IviR~~-~~~~~~~lA~~s~vPVINa~~~~~HPtQ~LaDl~Ti~e~~g~~---l~gl~va~vGD~ 164 (335)
T 1dxh_A 90 MKDTARVLGRM-YDAIEYRGF-KQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREHSDKP---LHDISYAYLGDA 164 (335)
T ss_dssp HHHHHHHHHHH-CSEEEEECS-CHHHHHHHHHHSSSCEEEEECSSCCHHHHHHHHHHHHHTCSSC---GGGCEEEEESCC
T ss_pred HHHHHHHHHhh-CCEEEEecC-ChhHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHcCCC---cCCeEEEEecCC
Confidence 45556778888 899999987 477899999999999998643 22222 23321000 134689999984
Q ss_pred --hhhchHHHHHHHHhcCCceeecCccc
Q 017159 226 --ATLSAGFYQEKLQNQGFEVVLPDKAT 251 (376)
Q Consensus 226 --~T~~s~~Y~~~L~~~G~evv~p~~~~ 251 (376)
.+.. -+-..+...|.++.+..++.
T Consensus 165 ~~~va~--Sl~~~~~~~G~~v~~~~P~~ 190 (335)
T 1dxh_A 165 RNNMGN--SLLLIGAKLGMDVRIAAPKA 190 (335)
T ss_dssp SSHHHH--HHHHHHHHTTCEEEEECCGG
T ss_pred ccchHH--HHHHHHHHcCCEEEEECCcc
Confidence 3333 34455777899988766543
No 243
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=36.15 E-value=57 Score=31.43 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhch--HHHH---HHHHhcCCceeecC
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSA--GFYQ---EKLQNQGFEVVLPD 248 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s--~~Y~---~~L~~~G~evv~p~ 248 (376)
++...+.++..|. +|+.|++-+...+. ++++ +.|++.|+++.+.+
T Consensus 21 ~~~l~~~l~~~g~--------~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~ 70 (387)
T 3bfj_A 21 ISVVGERCQLLGG--------KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFD 70 (387)
T ss_dssp GGGHHHHHHHTTC--------SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCC--------CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEEC
Confidence 3445555665543 38888877766665 5555 44666788875543
No 244
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=35.87 E-value=2.2e+02 Score=27.15 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH-------HHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC-------VAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea-------t~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=.. .|-.++++.+..++||||..+. .+. .+++. |. -.+.+|+++|-
T Consensus 103 l~DTarvLs~~-~D~iviR~~-~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~vGD 175 (325)
T 1vlv_A 103 LEDTARVLGRM-VDAIMFRGY-KQETVEKLAEYSGVPVYNGLTDEFHPTQALADLMTIEENFGR-----LKGVKVVFMGD 175 (325)
T ss_dssp HHHHHHHHHTT-CSEEEEESS-CHHHHHHHHHHHCSCEEESCCSSCCHHHHHHHHHHHHHHHSC-----STTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEECC-ChHHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCC-----cCCcEEEEECC
Confidence 45556778877 899999987 4778899998889999996431 111 12222 21 13468999998
Q ss_pred chhhchHHHHHHHHhcCCceeecCccc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKAT 251 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~~ 251 (376)
...--.+-+-..+...|.++.+..++.
T Consensus 176 ~~~rva~Sl~~~~~~~G~~v~~~~P~~ 202 (325)
T 1vlv_A 176 TRNNVATSLMIACAKMGMNFVACGPEE 202 (325)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEESCGG
T ss_pred CCcCcHHHHHHHHHHCCCEEEEECCcc
Confidence 311122334556777899988766543
No 245
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=35.72 E-value=2.2e+02 Score=27.49 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=71.5
Q ss_pred EEEeecchhhchHHHHHHHHhcCCcee-ecCccccccchHHHHHHHhc-CCh----H--HHHHHHHHHHHHHhhCCCCEE
Q 017159 219 IGVLATDATLSAGFYQEKLQNQGFEVV-LPDKATMEHVIIPTIEALNH-RDM----E--GARNLLRIGIQLLLVRAVNAV 290 (376)
Q Consensus 219 VGlLaT~~T~~s~~Y~~~L~~~G~evv-~p~~~~q~~~l~~~ie~lk~-G~~----~--~a~~~l~~~i~~L~~~gaDaV 290 (376)
+.+++|+.-.++ -+.|+++|++++ +++.+.++ .++++.+.+ |.. . .+.+.+..+++.+.+.|.+.+
T Consensus 92 i~~~st~fD~~s---vd~l~~~~v~~~KI~S~~~~N---~pLL~~va~~gKPviLstGmstl~Ei~~Ave~i~~~g~~vi 165 (350)
T 3g8r_A 92 FKAICTPFDEES---VDLIEAHGIEIIKIASCSFTD---WPLLERIARSDKPVVASTAGARREDIDKVVSFMLHRGKDLT 165 (350)
T ss_dssp CEEEEEECSHHH---HHHHHHTTCCEEEECSSSTTC---HHHHHHHHTSCSCEEEECTTCCHHHHHHHHHHHHTTTCCEE
T ss_pred CcEEeccCCHHH---HHHHHHcCCCEEEECcccccC---HHHHHHHHhhCCcEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence 568888876554 466788888877 44445553 355666543 321 0 135567777777777788878
Q ss_pred EECCC-ccccccCCCC---------CC-CCeeeehH------HHHHHHHHHHHHhccccccccccCCCCCCCCcccchhH
Q 017159 291 IIGSD-EMQGVLPKDD---------PL-LKKCIDPM------DALARSTVTWARSNKKLTLLLDSQSSAKQCPREQSSAL 353 (376)
Q Consensus 291 ILGCT-Elpll~~~~~---------~~-~vpvIDp~------~~lA~a~v~~a~~~~~~~l~~~~~~~~~~~~~~~s~~~ 353 (376)
+|=|| .||.-.+..+ .. .+|+-+|- ...+.+++ +.+..-..-++..... .+.-..+|-.+
T Consensus 166 LlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt~g~~~~~~~AAv--AlGA~vIEkH~tldr~-~g~D~~~Sl~P 242 (350)
T 3g8r_A 166 IMHCVAEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHEDPDLMEPIMLAV--AQGATVFEKHVGLPTD-QYGINNYSANP 242 (350)
T ss_dssp EEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECCCSSCCHHHHHHH--HTTCCEEEEEBCCCBT-TBCCCTTCBCH
T ss_pred EEecCCCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCCCCCccHHHHHHH--HcCCCEEEEecCcccC-CCCcccccCCH
Confidence 87775 4553222111 12 36666551 12233333 3332211111122221 23344677778
Q ss_pred HHHHHHHHH
Q 017159 354 LQFKQLWKI 362 (376)
Q Consensus 354 ~~~~~~~~~ 362 (376)
.+|+++.+.
T Consensus 243 ~ef~~lv~~ 251 (350)
T 3g8r_A 243 EQVRRWLAA 251 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 246
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=35.61 E-value=2.4e+02 Score=26.56 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=.. .|-.++++.+..++||||... +.+. .+++. |. -.+.+|+++|-
T Consensus 84 l~DTarvls~~-~D~iviR~~-~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~vGD 156 (307)
T 2i6u_A 84 LQDTAKVLSRY-VDAIVWRTF-GQERLDAMASVATVPVINALSDEFHPCQVLADLQTIAERKGA-----LRGLRLSYFGD 156 (307)
T ss_dssp HHHHHHHHHHH-EEEEEEECS-SHHHHHHHHHHCSSCEEESCCSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecC-ChhHHHHHHhhCCCCEEcCCCCCcCccHHHHHHHHHHHHhCC-----cCCeEEEEECC
Confidence 55556778888 899999987 477899999999999998643 1111 12222 21 13468999998
Q ss_pred c--hhhchHHHHHHHHhcCCceeecCccc
Q 017159 225 D--ATLSAGFYQEKLQNQGFEVVLPDKAT 251 (376)
Q Consensus 225 ~--~T~~s~~Y~~~L~~~G~evv~p~~~~ 251 (376)
- .+.. -+-..+...|.++.+..++.
T Consensus 157 ~~~rva~--Sl~~~~~~~g~~v~~~~P~~ 183 (307)
T 2i6u_A 157 GANNMAH--SLLLGGVTAGIHVTVAAPEG 183 (307)
T ss_dssp TTSHHHH--HHHHHHHHTTCEEEEECCTT
T ss_pred CCcCcHH--HHHHHHHHCCCEEEEECCcc
Confidence 4 3333 34556777899988766543
No 247
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=35.60 E-value=2.3e+02 Score=27.51 Aligned_cols=89 Identities=11% Similarity=0.003 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|++=... |-.++++.+..+|||||... +.+. .+++. |. -.+.+|+++|-
T Consensus 116 l~DTarvLs~~-~D~IviR~~~-~~~~~~lA~~s~vPVINa~~~~~HPtQaLaDl~Ti~E~~G~-----l~glkva~vGD 188 (365)
T 4amu_A 116 IEDTAKVLGRF-YDGIEFRGFA-QSDVDALVKYSGVPVWNGLTDDEHPTQIIADFMTMKEKFGN-----LKNKKIVFIGD 188 (365)
T ss_dssp HHHHHHHHHHH-CSEEEEECSC-HHHHHHHHHHHCSCEEEEECSSCCHHHHHHHHHHHHHHHSS-----CTTCEEEEESS
T ss_pred HHHHHHHHHhh-CcEEEEecCC-hhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHHhCC-----CCCCEEEEECC
Confidence 45556778887 8999998764 66788888888999998632 2221 22222 21 23568999986
Q ss_pred chhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
-..--.+.+-..+...|.++.+..++
T Consensus 189 ~~nnva~Sl~~~~~~lG~~v~~~~P~ 214 (365)
T 4amu_A 189 YKNNVGVSTMIGAAFNGMHVVMCGPD 214 (365)
T ss_dssp TTSHHHHHHHHHHHHTTCEEEEESCG
T ss_pred CCcchHHHHHHHHHHcCCEEEEECCc
Confidence 41111334556677789988776553
No 248
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=35.57 E-value=2e+02 Score=26.99 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=... |-.++++.+..++||||..+ +.+. .+++. |. -.+.+|+++|-
T Consensus 90 l~DTarvls~~-~D~iviR~~~-~~~~~~la~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~gl~ia~vGD 162 (301)
T 2ef0_A 90 VRDVAKNLERF-VEGIAARVFR-HETVEALARHAKVPVVNALSDRAHPLQALADLLTLKEVFGG-----LAGLEVAWVGD 162 (301)
T ss_dssp HHHHHHHHTTT-CSEEEEECSS-HHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred hHHHHHHHHHh-CCEEEEecCC-hHHHHHHHHHCCCCEEeCCCCccCchHHHHHHHHHHHHhCC-----cCCcEEEEECC
Confidence 45556778777 8999999874 77789999999999998643 1111 12222 21 13568999998
Q ss_pred chhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
-.-+ .+-+-..+...|.++.+..++
T Consensus 163 ~~rv-a~Sl~~~~~~~g~~v~~~~P~ 187 (301)
T 2ef0_A 163 GNNV-LNSLLEVAPLAGLKVRVATPK 187 (301)
T ss_dssp CCHH-HHHHHHHHHHHTCEEEEECCT
T ss_pred Cchh-HHHHHHHHHHcCCEEEEECCc
Confidence 4212 233455567779888876654
No 249
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=35.53 E-value=1.8e+02 Score=27.45 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHH--------HH--HHHHHh-cCCCCcCCCCceEEEee
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGEC--------VA--KELKEA-KLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ivea--------t~--~~~~~~-g~k~~~~~~~~rVGlLa 223 (376)
+.+.++-|.+. +|+|||=... |-..+++.+..++||||..+- .+ -.+++. |. -.+.+|+++|
T Consensus 86 l~DTarvls~~-~D~iviR~~~-~~~~~~lA~~~~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~-----l~glkva~vG 158 (306)
T 4ekn_B 86 LIDTIRVISGY-ADIIVLRHPS-EGAARLASEYSQVPIINAGDGSNQHPTQTLLDLYTIMREIGR-----IDGIKIAFVG 158 (306)
T ss_dssp HHHHHHHHHHH-CSEEEEECSS-TTHHHHHHHHCSSCEEESCSSSSCCHHHHHHHHHHHHHHHSC-----STTCEEEEES
T ss_pred HHHHHHHHHHh-CcEEEEEcCC-hHHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCC-----cCCCEEEEEc
Confidence 45556778887 4999999875 667888888899999998541 11 122322 21 2356999999
Q ss_pred cch-hhchHHHHHHHHhc-CCceeecCcc
Q 017159 224 TDA-TLSAGFYQEKLQNQ-GFEVVLPDKA 250 (376)
Q Consensus 224 T~~-T~~s~~Y~~~L~~~-G~evv~p~~~ 250 (376)
=-. .--.+-+-..+... |.++.+..++
T Consensus 159 D~~~~rva~Sl~~~~~~~~G~~v~~~~P~ 187 (306)
T 4ekn_B 159 DLKYGRTVHSLVYALSLFENVEMYFVSPK 187 (306)
T ss_dssp CTTTCHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEECCc
Confidence 631 11123355667788 9888776553
No 250
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=35.51 E-value=55 Score=31.48 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHH---HHHhcCCceeecC
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQE---KLQNQGFEVVLPD 248 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~---~L~~~G~evv~p~ 248 (376)
++...+.+++.|.+ |+.|++-+...+.+++++ .|++.|+++.+.+
T Consensus 19 ~~~l~~~l~~~g~~--------~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~ 66 (386)
T 1rrm_A 19 VGALTDEVKRRGYQ--------KALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYD 66 (386)
T ss_dssp GGGHHHHHHHHTCC--------EEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCC--------EEEEEECcchhhchHHHHHHHHHHHcCCeEEEEC
Confidence 44455556655533 888887766656555554 4566788876443
No 251
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=35.42 E-value=27 Score=33.28 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=37.4
Q ss_pred HHHHHHcCCcEEEEeCCCchhh-------------HHHHhccCCCCee-----ccHHHHHHHHHHhcC
Q 017159 159 RAFLEQAGARCIVMPCHISHAW-------------HGDVSEGCSIPFL-----HVGECVAKELKEAKL 208 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~-------------~d~L~~~~~vPvl-----~Iveat~~~~~~~g~ 208 (376)
.++.++.|+|+++++--|+|=. +++|++.+++|++ ++.+..++.+.+.|-
T Consensus 159 ~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg 226 (305)
T 1rvg_A 159 RIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGG 226 (305)
T ss_dssp HHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhcc
Confidence 3556678999999999999953 4567788889987 566666776666653
No 252
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=35.25 E-value=2.2e+02 Score=26.89 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=.. .|-.++++.+..++||||..+ +.+. .+.+. |. -.+.+|+++|-
T Consensus 91 l~DTarvls~~-~D~iviR~~-~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~vGD 163 (315)
T 1pvv_A 91 IADTARVLSRY-VDAIMARVY-DHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGT-----IKGVKVVYVGD 163 (315)
T ss_dssp HHHHHHHHTTT-CSEEEEECS-SHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CcEEEEecC-chHHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHhCC-----cCCcEEEEECC
Confidence 45556778777 899999987 477889999999999998643 1211 12222 21 13568999988
Q ss_pred chhhchHHHHHHHHhcCCceeecCccc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKAT 251 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~~ 251 (376)
-.- -.+-+-..+...|.++.+..++.
T Consensus 164 ~~r-va~Sl~~~~~~~g~~v~~~~P~~ 189 (315)
T 1pvv_A 164 GNN-VAHSLMIAGTKLGADVVVATPEG 189 (315)
T ss_dssp CCH-HHHHHHHHHHHTTCEEEEECCTT
T ss_pred Ccc-hHHHHHHHHHHCCCEEEEECCcc
Confidence 422 22335556777899988766543
No 253
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=35.09 E-value=2.7e+02 Score=25.64 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=16.1
Q ss_pred eEEE-eecchhhchHHHHHHHHhcCCcee
Q 017159 218 RIGV-LATDATLSAGFYQEKLQNQGFEVV 245 (376)
Q Consensus 218 rVGl-LaT~~T~~s~~Y~~~L~~~G~evv 245 (376)
++-| ++|-.--.+.-..+.++++|+..+
T Consensus 91 ~iiId~sT~~p~~~~~~a~~~~~~G~~~l 119 (300)
T 3obb_A 91 TLVLECSTIAPTSARKIHAAARERGLAML 119 (300)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 4444 444333334446677788888766
No 254
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=35.08 E-value=1.2e+02 Score=27.23 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 017159 155 LRHKRAFLEQAGARCIVMP 173 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIa 173 (376)
..+.++.|++.|+|.|=+.
T Consensus 34 ~~~~~~~l~~~Gad~ielg 52 (262)
T 1rd5_A 34 TAEALRLLDGCGADVIELG 52 (262)
T ss_dssp HHHHHHHHHHTTCSSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 3444566888999998764
No 255
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=34.73 E-value=2.1e+02 Score=24.99 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh---hHHHHhccCCCC-----eeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchh
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHA---WHGDVSEGCSIP-----FLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDAT 227 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~---~~d~L~~~~~vP-----vl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T 227 (376)
.+.++.|.+.|..++++..|+... +.+.++ ..+++ ++.-..+++..+++.. +.+++.++|+.+
T Consensus 23 ~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~-~lg~~~~~~~i~~~~~~~~~~l~~~~-------~~~~v~viG~~~- 93 (263)
T 1zjj_A 23 RELIEFLKERGIPFAFLTNNSTKTPEMYREKLL-KMGIDVSSSIIITSGLATRLYMSKHL-------DPGKIFVIGGEG- 93 (263)
T ss_dssp HHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHH-TTTCCCCGGGEEEHHHHHHHHHHHHS-------CCCCEEEESCHH-
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH-HCCCCCChhhEEecHHHHHHHHHHhC-------CCCEEEEEcCHH-
Confidence 344566788899888777766432 345554 34664 6666667777776642 224899998853
Q ss_pred hchHHHHHHHHhcCCceee
Q 017159 228 LSAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 228 ~~s~~Y~~~L~~~G~evv~ 246 (376)
..+.++++|++...
T Consensus 94 -----l~~~l~~~G~~~~~ 107 (263)
T 1zjj_A 94 -----LVKEMQALGWGIVT 107 (263)
T ss_dssp -----HHHHHHHHTSCBCC
T ss_pred -----HHHHHHHcCCeecc
Confidence 35567788887653
No 256
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=34.71 E-value=1.1e+02 Score=28.78 Aligned_cols=61 Identities=18% Similarity=0.100 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCcEEEEeCC------Cc-----------hhhHHHHhccCCCCeec---c--HHHHHHHHHHhcCCCCcCC
Q 017159 157 HKRAFLEQAGARCIVMPCH------IS-----------HAWHGDVSEGCSIPFLH---V--GECVAKELKEAKLKPLEAG 214 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCN------TA-----------H~~~d~L~~~~~vPvl~---I--veat~~~~~~~g~k~~~~~ 214 (376)
+.++.++++|||+|++.-. |. -..+.++++.+++||+. | ...+++.+ ..|.
T Consensus 161 e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kal-alGA------ 233 (336)
T 1ypf_A 161 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSI-RFGA------ 233 (336)
T ss_dssp HHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHH-HTTC------
T ss_pred HHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHH-HcCC------
Confidence 4567788999999999311 10 11256677777899885 2 23334433 4565
Q ss_pred CCceEEEeecchh
Q 017159 215 SGVRIGVLATDAT 227 (376)
Q Consensus 215 ~~~rVGlLaT~~T 227 (376)
....+||...
T Consensus 234 ---daV~iGr~~l 243 (336)
T 1ypf_A 234 ---TMVMIGSLFA 243 (336)
T ss_dssp ---SEEEESGGGT
T ss_pred ---CEEEeChhhh
Confidence 3455787664
No 257
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=34.58 E-value=1e+02 Score=25.38 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=41.6
Q ss_pred cCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHHHcCCc
Q 017159 89 GGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLEQAGAR 168 (376)
Q Consensus 89 GGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~~~Gad 168 (376)
.|+|...+.+.+.++.+..... .+++|++.-- ..+.. ...+. +++.+.+.+.++.+.+.|++
T Consensus 40 ~g~~G~~~~~~~~~~~~~~~~~---~pd~Vii~~G----------~ND~~---~~~~~--~~~~~~l~~li~~~~~~~~~ 101 (190)
T 1ivn_A 40 ASISGDTSQQGLARLPALLKQH---QPRWVLVELG----------GNDGL---RGFQP--QQTEQTLRQILQDVKAANAE 101 (190)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHH---CCSEEEEECC----------TTTTS---SSCCH--HHHHHHHHHHHHHHHHTTCE
T ss_pred cCCCCchHHHHHHHHHHHHHhc---CCCEEEEEee----------ccccc---cCCCH--HHHHHHHHHHHHHHHHcCCC
Confidence 3777777777777766554321 3567765421 11110 01122 66777888888889888999
Q ss_pred EEEEeC
Q 017159 169 CIVMPC 174 (376)
Q Consensus 169 ~IVIaC 174 (376)
.+++..
T Consensus 102 vil~~~ 107 (190)
T 1ivn_A 102 PLLMQI 107 (190)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 887743
No 258
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=34.35 E-value=1.3e+02 Score=26.12 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=40.5
Q ss_pred HHHHHHcCCcEEEEeCCCc--------hhhHHHHhccCCCCeec---cH-HHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 159 RAFLEQAGARCIVMPCHIS--------HAWHGDVSEGCSIPFLH---VG-ECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTA--------H~~~d~L~~~~~vPvl~---Iv-eat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
++.+++.|+|.|.+-.-+. -..+.++++.+++|++- +- ..-+..+.+.|.. -.++|+..
T Consensus 160 ~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~---------~v~vgsal 230 (253)
T 1h5y_A 160 AKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGAD---------AVLAASLF 230 (253)
T ss_dssp HHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCS---------EEEESHHH
T ss_pred HHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCc---------HHHHHHHH
Confidence 4557788999997643221 12366777777888773 22 1334444455542 34455533
Q ss_pred hhc---hHHHHHHHHhcCCce
Q 017159 227 TLS---AGFYQEKLQNQGFEV 244 (376)
Q Consensus 227 T~~---s~~Y~~~L~~~G~ev 244 (376)
.-. ..-..+.+++.|+++
T Consensus 231 ~~~~~~~~~~~~~l~~~g~~~ 251 (253)
T 1h5y_A 231 HFRVLSIAQVKRYLKERGVEV 251 (253)
T ss_dssp HTTSSCHHHHHHHHHHTTCBC
T ss_pred HcCCCCHHHHHHHHHHcCCCC
Confidence 211 122344556666654
No 259
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=34.04 E-value=1.5e+02 Score=25.07 Aligned_cols=76 Identities=12% Similarity=0.014 Sum_probs=44.7
Q ss_pred EEEEc-CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhcc-ccccCcchHHHHHHHHHHHHHHH
Q 017159 85 IGIIG-GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKS-KTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 85 IGIIG-GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~-~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
+-++. |+++..+..++.++.+..... ..+++|++.-- ..+... .....+. +++.+.+.+.++.+
T Consensus 44 ~~v~n~g~~G~~~~~~~~~~~~~~~~~--~~pd~vvi~~G----------~ND~~~~~~~~~~~--~~~~~~l~~~i~~~ 109 (240)
T 3mil_A 44 MDILQRGFKGYTSRWALKILPEILKHE--SNIVMATIFLG----------ANDACSAGPQSVPL--PEFIDNIRQMVSLM 109 (240)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHC--CCEEEEEEECC----------TTTTSSSSTTCCCH--HHHHHHHHHHHHHH
T ss_pred eEEEecCcCcccHHHHHHHHHHHhccc--CCCCEEEEEee----------cCcCCccCCCCCCH--HHHHHHHHHHHHHH
Confidence 44444 677777777777776544432 35666665421 111100 0011122 67778888888999
Q ss_pred HHcCCcEEEEeC
Q 017159 163 EQAGARCIVMPC 174 (376)
Q Consensus 163 ~~~Gad~IVIaC 174 (376)
.+.|+.++++..
T Consensus 110 ~~~~~~vil~~~ 121 (240)
T 3mil_A 110 KSYHIRPIIIGP 121 (240)
T ss_dssp HHTTCEEEEECC
T ss_pred HHcCCeEEEEcC
Confidence 999998888764
No 260
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=33.87 E-value=2.8e+02 Score=25.34 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
..+.++.+.++|+|++-.....
T Consensus 39 a~~~a~~l~~~Ga~~vk~~~fk 60 (262)
T 1zco_A 39 IMKVAEFLAEVGIKVLRGGAFK 60 (262)
T ss_dssp HHHHHHHHHHTTCCEEECBSSC
T ss_pred HHHHHHHHHHcCCCEEEEEecc
Confidence 5556677888999988777655
No 261
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=33.59 E-value=1.3e+02 Score=27.69 Aligned_cols=54 Identities=20% Similarity=0.154 Sum_probs=27.3
Q ss_pred HHHHhccCCCCeeccH----------HHHHHHHHHhcCCCCcCCCCceEEEeecchhhc-hHHHHHHHHhcCCce
Q 017159 181 HGDVSEGCSIPFLHVG----------ECVAKELKEAKLKPLEAGSGVRIGVLATDATLS-AGFYQEKLQNQGFEV 244 (376)
Q Consensus 181 ~d~L~~~~~vPvl~Iv----------eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~-s~~Y~~~L~~~G~ev 244 (376)
..++++..++|++-|. +.-++.+.+.|.. |++.-+.+.+ ...|.+.+.++|++.
T Consensus 83 v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~d----------Gviv~Dl~~ee~~~~~~~~~~~gl~~ 147 (271)
T 1ujp_A 83 VREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGAT----------GVILPDLPPDEDPGLVRLAQEIGLET 147 (271)
T ss_dssp HHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCC----------EEECTTCCGGGCHHHHHHHHHHTCEE
T ss_pred HHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCC----------EEEecCCCHHHHHHHHHHHHHcCCce
Confidence 5566666677766642 1223344554432 4444444433 233556666666543
No 262
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=33.50 E-value=31 Score=33.47 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=20.9
Q ss_pred ceEEEeecchhhchHHHHH---HHHhcCCceeec
Q 017159 217 VRIGVLATDATLSAGFYQE---KLQNQGFEVVLP 247 (376)
Q Consensus 217 ~rVGlLaT~~T~~s~~Y~~---~L~~~G~evv~p 247 (376)
+|+.|++-+...+.+++++ .|++.|+++.+.
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~ 65 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVY 65 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEE
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEE
Confidence 4888887776666655554 466778887554
No 263
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=33.43 E-value=1.9e+02 Score=26.21 Aligned_cols=61 Identities=18% Similarity=0.393 Sum_probs=32.4
Q ss_pred CCceEEEeecchhhchHHHH-------HHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCC
Q 017159 215 SGVRIGVLATDATLSAGFYQ-------EKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAV 287 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~s~~Y~-------~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~ga 287 (376)
..++||++... +...+|. +.++++|+++++.+.. ++. +...+.++.+..+++
T Consensus 57 ~~~~Igvi~~~--~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---------------~~~----~~~~~~~~~l~~~~v 115 (340)
T 1qpz_A 57 HTKSIGLLATS--SEAAYFAEIIEAVEKNCFQKGYTLILGNAW---------------NNL----EKQRAYLSMMAQKRV 115 (340)
T ss_dssp CCSEEEEEESC--SCSHHHHHHHHHHHHHHHHTTCEEEEEECT---------------TCH----HHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCC--CCChHHHHHHHHHHHHHHHcCCEEEEEeCC---------------CCH----HHHHHHHHHHHcCCC
Confidence 34589988753 2344554 3455668777653211 011 111233445556778
Q ss_pred CEEEECCCc
Q 017159 288 NAVIIGSDE 296 (376)
Q Consensus 288 DaVILGCTE 296 (376)
|+||+..++
T Consensus 116 dgiI~~~~~ 124 (340)
T 1qpz_A 116 DGLLVMCSE 124 (340)
T ss_dssp SEEEECCSC
T ss_pred CEEEEeCCC
Confidence 888876544
No 264
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=33.30 E-value=1.3e+02 Score=28.40 Aligned_cols=88 Identities=14% Similarity=0.159 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccC-CCCeeccHH-H-------HHH--HHHHh-cCCCCcCCCCceEEEe
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGC-SIPFLHVGE-C-------VAK--ELKEA-KLKPLEAGSGVRIGVL 222 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~-~vPvl~Ive-a-------t~~--~~~~~-g~k~~~~~~~~rVGlL 222 (376)
+.+.++-|.+. +|+|||=... |-..+++.+.. ++||||..+ . .+. .+++. |. -.+.+|+++
T Consensus 88 l~DTarvls~~-~D~iviR~~~-~~~~~~la~~~~~vPVINag~G~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~v 160 (310)
T 3csu_A 88 LADTISVISTY-VDAIVMRHPQ-EGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGR-----LDNLHVAMV 160 (310)
T ss_dssp HHHHHHHHTTT-CSEEEEEESS-TTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHHHHSC-----SSSCEEEEE
T ss_pred HHHHHHHHHHh-CCEEEEECCC-hhHHHHHHHhcCCCCEEcCccCCCCCchHHHHHHHHHHHHhCC-----cCCcEEEEE
Confidence 55556778777 8999999874 77788888888 999999865 1 111 12222 21 135689999
Q ss_pred ecc---hhhchHHHHHHHHhc-CCceeecCccc
Q 017159 223 ATD---ATLSAGFYQEKLQNQ-GFEVVLPDKAT 251 (376)
Q Consensus 223 aT~---~T~~s~~Y~~~L~~~-G~evv~p~~~~ 251 (376)
|-- .+. +-+-..+... |.++.+..++.
T Consensus 161 GD~~~~rva--~Sl~~~~~~~~g~~v~~~~P~~ 191 (310)
T 3csu_A 161 GDLKYGRTV--HSLTQALAKFDGNRFYFIAPDA 191 (310)
T ss_dssp SCTTTCHHH--HHHHHHHHTSSSCEEEEECCGG
T ss_pred CCCCCCchH--HHHHHHHHhCCCCEEEEECCcc
Confidence 963 232 3355567778 99988766543
No 265
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=33.21 E-value=1.9e+02 Score=27.98 Aligned_cols=108 Identities=13% Similarity=0.168 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhh
Q 017159 149 GAVSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATL 228 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~ 228 (376)
++-++.+.+.+-...++|||+|. |+.-+.=- |.++-+++-+.|+. .|+||+=.+-.
T Consensus 159 D~Tl~~Lak~Als~A~AGADiVA-PSdMMDGr---------------V~aIR~aLd~~G~~--------~v~IMsYsaKy 214 (356)
T 3obk_A 159 DLTVHQLCKQAITLARAGADMVC-PSDMMDGR---------------VSAIRESLDMEGCT--------DTSILAYSCKY 214 (356)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEE-ECSCCTTH---------------HHHHHHHHHHTTCT--------TSEEEEEEEEB
T ss_pred HHHHHHHHHHHHHHHHcCCCeEe-ccccccCH---------------HHHHHHHHHHCCCC--------CcceehhHHHH
Confidence 67778888888889999999654 66554432 33444455566764 58999988888
Q ss_pred chHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 229 SAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 229 ~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
.|.+|...-++.|-.. |...+... + .. +....++.++++...+ ++|||.|..
T Consensus 215 ASafYGPFRdAa~Sa~--p~~GDRkt-----Y-Qm---dpaN~~EAlrE~~lDi-~EGAD~vMV 266 (356)
T 3obk_A 215 ASSFYGPFRDALDSHM--VGGTDKKT-----Y-QM---DPSNSREAEREAEADA-SEGADMLMV 266 (356)
T ss_dssp CCSTTHHHHHHHTCCC--STTCCSTT-----T-SB---CTTCSHHHHHHHHHHH-HTTCSEEEE
T ss_pred hhhccchhhHHhcCCC--CCCCCccc-----c-CC---CCCCHHHHHHHHHhhH-hcCCCEEEe
Confidence 8999887655555431 22111210 0 00 1111355666665555 579997665
No 266
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=32.83 E-value=1.5e+02 Score=26.06 Aligned_cols=79 Identities=16% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch-----h---hHHHHhccCCCCeecc--H--HHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 156 RHKRAFLEQAGARCIVMPCHISH-----A---WHGDVSEGCSIPFLHV--G--ECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH-----~---~~d~L~~~~~vPvl~I--v--eat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
.+.++.++++|+|.|.+---++. . .+.++++.+++|++-. + ..-++.+.+.|.. .| +++
T Consensus 34 ~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad--------~V-~lg 104 (252)
T 1ka9_F 34 VEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGAD--------KV-SVN 104 (252)
T ss_dssp HHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCS--------EE-EEC
T ss_pred HHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCC--------EE-EEC
Confidence 34456688899998876432221 1 1577788889999852 0 2345556666653 34 577
Q ss_pred cchhhchHHHHHHHHhcCCc
Q 017159 224 TDATLSAGFYQEKLQNQGFE 243 (376)
Q Consensus 224 T~~T~~s~~Y~~~L~~~G~e 243 (376)
+..--......+..+..|.+
T Consensus 105 ~~~l~~p~~~~~~~~~~~~~ 124 (252)
T 1ka9_F 105 SAAVRRPELIRELADHFGAQ 124 (252)
T ss_dssp HHHHHCTHHHHHHHHHHCGG
T ss_pred hHHHhCcHHHHHHHHHcCCC
Confidence 75544455567777666643
No 267
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=32.72 E-value=1.7e+02 Score=24.06 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=46.2
Q ss_pred EEEEc-CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHHH
Q 017159 85 IGIIG-GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFLE 163 (376)
Q Consensus 85 IGIIG-GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L~ 163 (376)
+-++. |.|...+.+++.++.+.... ..+++|++.-- ..|...... .........+. +++.+.+.+.++.+.
T Consensus 56 ~~~~n~g~~G~~~~~~~~~~~~~~~~---~~pd~vvi~~G-~ND~~~~~~--~~~~~~~~~~~--~~~~~~l~~~i~~~~ 127 (216)
T 3rjt_A 56 IRVVNVGTSGNTVADVARRWEDDVMA---LQPDYVSLMIG-VNDVWRQFD--MPLVVERHVGI--DEYRDTLRHLVATTK 127 (216)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHTGG---GCCSEEEEECC-HHHHHHHHH--STTCGGGCCCH--HHHHHHHHHHHHHHG
T ss_pred eEEEECCCCCccHHHHHHHHHhHHhh---cCCCEEEEEee-ccccchhhc--cccccccCCCH--HHHHHHHHHHHHHHH
Confidence 33444 78888888887777655432 24677776522 112111100 00000001122 678888888999998
Q ss_pred HcCCcEEEEe
Q 017159 164 QAGARCIVMP 173 (376)
Q Consensus 164 ~~Gad~IVIa 173 (376)
+.|+..+++.
T Consensus 128 ~~~~~vil~~ 137 (216)
T 3rjt_A 128 PRVREMFLLS 137 (216)
T ss_dssp GGSSEEEEEC
T ss_pred hcCCeEEEEC
Confidence 8899999884
No 268
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=32.68 E-value=3e+02 Score=26.55 Aligned_cols=88 Identities=9% Similarity=0.045 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=.. .|-.++++.+..++||||... +.+. .+++. |. -.+.+|+++|-
T Consensus 112 l~DTarvLs~~-~D~IviR~~-~~~~~~~lA~~s~vPVINa~~~~~HPtQaLaDl~Ti~E~~g~-----l~gl~va~vGD 184 (359)
T 2w37_A 112 TSDTAKVLGSM-FDGIEFRGF-KQSDAEILARDSGVPVWNGLTDEWHPTQMLADFMTVKENFGK-----LQGLTLTFMGD 184 (359)
T ss_dssp HHHHHHHHHHH-CSEEEEESS-CHHHHHHHHHHSSSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-cCEEEEecC-ChHHHHHHHHhCCCCEEcCCCCCCCccHHHHHHHHHHHHhCC-----cCCeEEEEECC
Confidence 55556778888 899999987 477899999999999998643 1211 12222 21 13468999998
Q ss_pred c--hhhchHHHHHHHHhcCCceeecCccc
Q 017159 225 D--ATLSAGFYQEKLQNQGFEVVLPDKAT 251 (376)
Q Consensus 225 ~--~T~~s~~Y~~~L~~~G~evv~p~~~~ 251 (376)
- .+..| +-..+...|+++.+..++.
T Consensus 185 ~~~rva~S--l~~~~~~lG~~v~~~~P~~ 211 (359)
T 2w37_A 185 GRNNVANS--LLVTGAILGVNIHIVAPKA 211 (359)
T ss_dssp TTSHHHHH--HHHHHHHHTCEEEEECCGG
T ss_pred CccchHHH--HHHHHHHcCCEEEEECCcc
Confidence 4 33333 4445667799888766543
No 269
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=32.19 E-value=1.7e+02 Score=26.69 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=13.4
Q ss_pred HHHHHHHHcCCcEEEEe
Q 017159 157 HKRAFLEQAGARCIVMP 173 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIa 173 (376)
+.++.++++|+|+|.+.
T Consensus 180 ~~a~~l~~~G~d~i~v~ 196 (311)
T 1ep3_A 180 PIAKAVEAAGADGLTMI 196 (311)
T ss_dssp HHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 34567889999999884
No 270
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=32.05 E-value=1.9e+02 Score=25.68 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=54.8
Q ss_pred CeEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecCCcchh--HHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 83 NTIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCNDPALNE--ELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 83 k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~p~ipd--~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
++|+|+- |-|.- ++.|.+....++. ..+..|+.|+|+... +-..++.|.+.-.....+ ++++.- .+.
T Consensus 8 ~ri~vl~SG~gsn-----l~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~~~~~-~r~~~d---~~~ 78 (209)
T 4ds3_A 8 NRVVIFISGGGSN-----MEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFA-SKEAHE---DAI 78 (209)
T ss_dssp EEEEEEESSCCHH-----HHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCGGGSS-SHHHHH---HHH
T ss_pred ccEEEEEECCcHH-----HHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCccccC-CHHHHH---HHH
Confidence 4688875 77765 6667776654432 345666666676532 222223333211111111 112221 233
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
.+.|++.++|+||++... +..=+++-+.....+||+
T Consensus 79 ~~~l~~~~~Dliv~agy~-~il~~~~l~~~~~~~iNi 114 (209)
T 4ds3_A 79 LAALDVLKPDIICLAGYM-RLLSGRFIAPYEGRILNI 114 (209)
T ss_dssp HHHHHHHCCSEEEESSCC-SCCCHHHHGGGTTCEEEE
T ss_pred HHHHHhcCCCEEEEeccc-cCcCHHHHhhccCCeEEE
Confidence 466788999999999874 555445555555556655
No 271
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=32.00 E-value=1.1e+02 Score=29.59 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCcEEEE
Q 017159 157 HKRAFLEQAGARCIVM 172 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVI 172 (376)
+.++.++++|||+|++
T Consensus 206 ~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 206 EAALDLISVGADCLKV 221 (404)
T ss_dssp HHHHHHHTTTCSEEEE
T ss_pred HHHHHHHhcCCCEEEE
Confidence 3456678899999999
No 272
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=31.84 E-value=14 Score=36.22 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=19.0
Q ss_pred CCeEEEEc-CCChHHHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGK 102 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~k 102 (376)
||+|-||| |++.++++.++.+
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~ 22 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQA 22 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHH
Confidence 88999999 9999999988765
No 273
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=31.78 E-value=65 Score=27.04 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=44.8
Q ss_pred cccccCCeEEEEc-CCChHHHHHHHHHHHHHhhh----CCCCCCCeEeecCCcch--hHHhhhchhhhccccccCcchHH
Q 017159 77 SLLNQANTIGIIG-GVSVSSTLNFLGKLVWYSAK----DAEECPPFVVCNDPALN--EELFHASVHSLKSKTVQLDHIRG 149 (376)
Q Consensus 77 ~~~~~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~----~dq~~~p~il~s~p~ip--d~l~~~s~~~~~~~~~~~~~~~~ 149 (376)
..|.+.+.|-++| |.+..++.++..++.+.-.. .|. +.+ .+. |-++.-| .+... .
T Consensus 32 ~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~-~~~-------~~~~~d~vI~iS-------~sG~t---~ 93 (186)
T 1m3s_A 32 DHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEI-LTP-------PLAEGDLVIIGS-------GSGET---K 93 (186)
T ss_dssp HHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTST-TCC-------CCCTTCEEEEEC-------SSSCC---H
T ss_pred HHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCcc-ccc-------CCCCCCEEEEEc-------CCCCc---H
Confidence 3455678899998 76666777777777553211 121 111 111 1111111 00111 3
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
++ .+.++.+.+.|+..|+|.++..++.
T Consensus 94 ~~----~~~~~~ak~~g~~vi~IT~~~~s~l 120 (186)
T 1m3s_A 94 SL----IHTAAKAKSLHGIVAALTINPESSI 120 (186)
T ss_dssp HH----HHHHHHHHHTTCEEEEEESCTTSHH
T ss_pred HH----HHHHHHHHHCCCEEEEEECCCCCch
Confidence 33 4455678889999999999865543
No 274
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=31.77 E-value=1.8e+02 Score=26.06 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=49.2
Q ss_pred CCeEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecCCcch--hHHhhhchhhhccccccCcchHHHHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCNDPALN--EELFHASVHSLKSKTVQLDHIRGAVSQNLRH 157 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~p~ip--d~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~ 157 (376)
|++|++++ |.|.. ...+.+...++.. ..+-.|+.+.|+-+ .+-..++.|...-...... ++++.-+ +
T Consensus 22 ~~rI~~l~SG~g~~-----~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~~~~~-~r~~~~~---~ 92 (229)
T 3auf_A 22 MIRIGVLISGSGTN-----LQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAYP-SRTAFDA---A 92 (229)
T ss_dssp CEEEEEEESSCCHH-----HHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECCGGGSS-SHHHHHH---H
T ss_pred CcEEEEEEeCCcHH-----HHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEECccccc-chhhccH---H
Confidence 56899995 66654 4445544433321 23444555545432 2222233333210101111 1122222 2
Q ss_pred HHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 158 KRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
..+.|++.++|+||++... ...=+++-+.....+||+
T Consensus 93 ~~~~l~~~~~Dliv~agy~-~IL~~~~l~~~~~~~iNi 129 (229)
T 3auf_A 93 LAERLQAYGVDLVCLAGYM-RLVRGPMLTAFPNRILNI 129 (229)
T ss_dssp HHHHHHHTTCSEEEESSCC-SCCCHHHHHHSTTCEEEE
T ss_pred HHHHHHhcCCCEEEEcChh-HhCCHHHHhhccCCEEEE
Confidence 3456788999999998763 444334444444445554
No 275
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=31.70 E-value=3.1e+02 Score=25.25 Aligned_cols=24 Identities=13% Similarity=-0.000 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhCCCCEEEECCCc
Q 017159 273 NLLRIGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 273 ~~l~~~i~~L~~~gaDaVILGCTE 296 (376)
+.+.+.++.+.+.|+|.|.|+=|+
T Consensus 159 ~~~~~~~~~~~~~G~d~i~l~DT~ 182 (302)
T 2ftp_A 159 RQVAWVARELQQMGCYEVSLGDTI 182 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC
Confidence 456666777778899999887443
No 276
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=31.65 E-value=1.2e+02 Score=26.71 Aligned_cols=61 Identities=23% Similarity=0.479 Sum_probs=34.7
Q ss_pred CCceEEEeecchhhchHHHHH-------HHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCC
Q 017159 215 SGVRIGVLATDATLSAGFYQE-------KLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAV 287 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~s~~Y~~-------~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~ga 287 (376)
..++|||+.... ...+|.. .++++|+++++-... ++. +...+.++.+..+++
T Consensus 7 ~~~~Igvv~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---------------~~~----~~~~~~~~~l~~~~v 65 (291)
T 3egc_A 7 RSNVVGLIVSDI--ENVFFAEVASGVESEARHKGYSVLLANTA---------------EDI----VREREAVGQFFERRV 65 (291)
T ss_dssp CCCEEEEEESCT--TSHHHHHHHHHHHHHHHHTTCEEEEEECT---------------TCH----HHHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCC--cchHHHHHHHHHHHHHHHCCCEEEEEeCC---------------CCH----HHHHHHHHHHHHCCC
Confidence 346899987642 3444443 455567777654321 011 112334455667889
Q ss_pred CEEEECCCc
Q 017159 288 NAVIIGSDE 296 (376)
Q Consensus 288 DaVILGCTE 296 (376)
|+||+..+.
T Consensus 66 dgiIi~~~~ 74 (291)
T 3egc_A 66 DGLILAPSE 74 (291)
T ss_dssp SEEEECCCS
T ss_pred CEEEEeCCC
Confidence 999987764
No 277
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=31.59 E-value=1.6e+02 Score=27.27 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.+++|.+.|+|.|++++.|.-.+ ++...+.. .+||+ |+ .+.+ ++++++.|..
T Consensus 30 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad----- 104 (297)
T 3flu_A 30 LRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGAD----- 104 (297)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS-----
T ss_pred HHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC-----
Confidence 45556788899999999999887553 22222222 47766 32 2333 3345555543
Q ss_pred CCceEEEeecchhh---ch---HHHHHHHHhcCCceeecCc
Q 017159 215 SGVRIGVLATDATL---SA---GFYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 215 ~~~rVGlLaT~~T~---~s---~~Y~~~L~~~G~evv~p~~ 249 (376)
-+ ++.+++-. +. .+|+...++.++.+++-+.
T Consensus 105 ---av-lv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 141 (297)
T 3flu_A 105 ---YT-LSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNV 141 (297)
T ss_dssp ---EE-EEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ---EE-EECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 23 34444311 12 2466666666888876654
No 278
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=31.50 E-value=1.3e+02 Score=24.37 Aligned_cols=73 Identities=16% Similarity=0.039 Sum_probs=45.6
Q ss_pred eEEEEc-CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 84 TIGIIG-GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 84 ~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
.+-++. |.+...+.+++.++.+.... ..+++|++.-- ..+.. ...+. +++.+.+.+.++.+
T Consensus 38 ~~~v~n~g~~G~~~~~~~~~~~~~~~~---~~pd~vvi~~G----------~ND~~---~~~~~--~~~~~~~~~~i~~~ 99 (185)
T 3hp4_A 38 DIVLINASISGETSGGALRRLDALLEQ---YEPTHVLIELG----------ANDGL---RGFPV--KKMQTNLTALVKKS 99 (185)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHHHHH---HCCSEEEEECC----------HHHHH---TTCCH--HHHHHHHHHHHHHH
T ss_pred cEEEEECCcCCccHHHHHHHHHHHHhh---cCCCEEEEEee----------cccCC---CCcCH--HHHHHHHHHHHHHH
Confidence 355554 77777777777777665432 25677766521 11110 01222 67778888888999
Q ss_pred HHcCCcEEEEeC
Q 017159 163 EQAGARCIVMPC 174 (376)
Q Consensus 163 ~~~Gad~IVIaC 174 (376)
.+.|+..+++..
T Consensus 100 ~~~~~~vvl~~~ 111 (185)
T 3hp4_A 100 QAANAMTALMEI 111 (185)
T ss_dssp HHTTCEEEEECC
T ss_pred HHcCCeEEEEeC
Confidence 999999888753
No 279
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=30.72 E-value=1e+02 Score=30.42 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=45.2
Q ss_pred cCCcEEEEeCCC--chhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcC
Q 017159 165 AGARCIVMPCHI--SHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQG 241 (376)
Q Consensus 165 ~Gad~IVIaCNT--AH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G 241 (376)
.|+|++|+.-.- .|+.+.+.++ .++|+++..+...+.+.. . +.|+|-||.| |--+.+....|++.|
T Consensus 76 ~~a~~vv~s~~i~~~~~~~~~a~~-~~i~vl~~~~~l~~~~~~--~--------~vI~VTGTnGKTTTt~ml~~iL~~~G 144 (475)
T 1p3d_A 76 EGASVVVVSSAIKDDNPELVTSKQ-KRIPVIQRAQMLAEIMRF--R--------HGIAVAGTHGKTTTTAMISMIYTQAK 144 (475)
T ss_dssp TTCSEEEECTTSCTTCHHHHHHHH-TTCCEEEHHHHHHHHHHT--S--------EEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHH-cCCcEEEHHHHHHHHhcC--C--------CEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 489988886432 1454544443 389999988866554432 1 3799999987 333456778888888
Q ss_pred Cc
Q 017159 242 FE 243 (376)
Q Consensus 242 ~e 243 (376)
..
T Consensus 145 ~~ 146 (475)
T 1p3d_A 145 LD 146 (475)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 280
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=30.71 E-value=1.3e+02 Score=26.38 Aligned_cols=20 Identities=10% Similarity=0.263 Sum_probs=13.0
Q ss_pred HHHHHhhCCCCEEEECCCcc
Q 017159 278 GIQLLLVRAVNAVIIGSDEM 297 (376)
Q Consensus 278 ~i~~L~~~gaDaVILGCTEl 297 (376)
.++.+..+++|+||+..+..
T Consensus 57 ~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 57 LIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp HHHHHHHTCCSEEEECCSCT
T ss_pred HHHHHHHhCCCEEEEeCCCh
Confidence 34445567889888866543
No 281
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=30.54 E-value=2.4e+02 Score=26.85 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=57.6
Q ss_pred HHHHH-HcCCcEEEEeCCCchhh------------HHHHhccCCCCeeccH--------HHHHHHHHHhcCCCCcCCCCc
Q 017159 159 RAFLE-QAGARCIVMPCHISHAW------------HGDVSEGCSIPFLHVG--------ECVAKELKEAKLKPLEAGSGV 217 (376)
Q Consensus 159 ~~~L~-~~Gad~IVIaCNTAH~~------------~d~L~~~~~vPvl~Iv--------eat~~~~~~~g~k~~~~~~~~ 217 (376)
++.+. +.|||+|-|.+-...+. .+.+++.+++|+. |- .++++++.+.|. ..
T Consensus 86 A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPls-IDg~~~~T~~~eV~eaAleaga-------g~ 157 (323)
T 4djd_D 86 AQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLV-VVGCGDVEKDHEVLEAVAEAAA-------GE 157 (323)
T ss_dssp HHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEE-EECCSCHHHHHHHHHHHHHHTT-------TS
T ss_pred HHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEE-EECCCCCCCCHHHHHHHHHhcC-------CC
Confidence 34444 89999999976544443 5667777788853 22 244555555442 11
Q ss_pred eEEEeecchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCC--CEEEECCC
Q 017159 218 RIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAV--NAVIIGSD 295 (376)
Q Consensus 218 rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~ga--DaVILGCT 295 (376)
+--|-+..+- +-.-.-....++|..+++-... + + +.+++.++.+.+.|+ +-|||-+.
T Consensus 158 ~~lINsv~~~-~~~~m~~laa~~g~~vVlmh~~--d--~----------------~~~~~l~~~a~~~GI~~e~IIlDPg 216 (323)
T 4djd_D 158 NLLLGNAEQE-NYKSLTAACMVHKHNIIARSPL--D--I----------------NICKQLNILINEMNLPLDHIVIDPS 216 (323)
T ss_dssp CCEEEEEBTT-BCHHHHHHHHHHTCEEEEECSS--C--H----------------HHHHHHHHHHHTTTCCGGGEEEECC
T ss_pred CCeEEECCcc-cHHHHHHHHHHhCCeEEEEccc--h--H----------------HHHHHHHHHHHHcCCCHHHEEEeCC
Confidence 2122232221 1112234556678877763211 1 1 123344455666787 66777654
Q ss_pred ccc
Q 017159 296 EMQ 298 (376)
Q Consensus 296 Elp 298 (376)
=.|
T Consensus 217 ~g~ 219 (323)
T 4djd_D 217 IGG 219 (323)
T ss_dssp CCC
T ss_pred Ccc
Confidence 443
No 282
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=30.48 E-value=1.8e+02 Score=28.64 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=44.5
Q ss_pred CCcEEEEeCCC--chhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcCC
Q 017159 166 GARCIVMPCHI--SHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQGF 242 (376)
Q Consensus 166 Gad~IVIaCNT--AH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G~ 242 (376)
++|.||+.--- .|+.+.+.++ .++|+++-.+...+.+..... +.|+|-||.| |--+.+....|++.|.
T Consensus 71 ~~d~vV~spgi~~~~p~~~~a~~-~gi~v~~~~e~l~~~~~~~~~--------~vI~VTGTnGKTTTt~ml~~iL~~~G~ 141 (469)
T 1j6u_A 71 DPDLVIKTPAVRDDNPEIVRARM-ERVPIENRLHYFRDTLKREKK--------EEFAVTGTDGKTTTTAMVAHVLKHLRK 141 (469)
T ss_dssp CCSEEEECTTCCTTCHHHHHHHH-TTCCEEEHHHHHHHHHHHHCC--------CEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCcCCCCHHHHHHHH-cCCcEEEHHHHHHHHHhccCC--------CEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 56766554332 3566666554 489999988776554331112 3899999987 3334567778888887
Q ss_pred ce
Q 017159 243 EV 244 (376)
Q Consensus 243 ev 244 (376)
.+
T Consensus 142 ~~ 143 (469)
T 1j6u_A 142 SP 143 (469)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 283
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=30.43 E-value=3.1e+02 Score=24.86 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecchh-----hchHHHHHHHHhcCCce---eecCccccccchHHHHHH-HhcC-
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDAT-----LSAGFYQEKLQNQGFEV---VLPDKATMEHVIIPTIEA-LNHR- 266 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T-----~~s~~Y~~~L~~~G~ev---v~p~~~~q~~~l~~~ie~-lk~G- 266 (376)
..+++++.+.|.+. +.+..++|++++.+.. .+..-|.+.++++|... +.......+. ....++. +.+.
T Consensus 127 ~~a~~~L~~~g~~~-~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~ 204 (350)
T 3h75_A 127 YRMLKELLHKLGPV-PAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLVYGEWNRER-AYRQAQQLLKRYP 204 (350)
T ss_dssp HHHHHHHHHHHCCC-CSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHH-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhhhh-cCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEeeCCCcHHH-HHHHHHHHHHhCC
Confidence 44567777765110 0011258999865421 12233788888888621 1222211211 1111222 2222
Q ss_pred ChH----HHHHHHHHHHHHHhhCCC----CEEEECCCccccc
Q 017159 267 DME----GARNLLRIGIQLLLVRAV----NAVIIGSDEMQGV 300 (376)
Q Consensus 267 ~~~----~a~~~l~~~i~~L~~~ga----DaVILGCTElpll 300 (376)
+++ ........+++.+.+.|. |..|.|+-..+..
T Consensus 205 ~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~~ 246 (350)
T 3h75_A 205 KTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNSSPEA 246 (350)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCHHH
T ss_pred CcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecCCCHHH
Confidence 111 112233445555666553 6888888887754
No 284
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=30.34 E-value=3.4e+02 Score=25.31 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCch
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHISH 178 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTAH 178 (376)
+.+.+.+.++...++|||+|-|.-..+.
T Consensus 188 i~~~~~~~~~~qi~aGad~i~i~D~~a~ 215 (348)
T 4ay7_A 188 ATEASIIYANAMVEAGADVIAIADPVAS 215 (348)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEECGGGS
T ss_pred HHHHHHHHHHHHHhcCCCcceeeccccc
Confidence 4445555566667799999988764443
No 285
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=30.19 E-value=89 Score=31.72 Aligned_cols=89 Identities=16% Similarity=0.109 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCcEEEE-eCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHH
Q 017159 155 LRHKRAFLEQAGARCIVM-PCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFY 233 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVI-aCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y 233 (376)
....++.|++.|++.|.. |-...-+++|.+.+.-++.++....+-.....+.|+-. ..++-..+++|.++=....+
T Consensus 14 a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr---~tG~pgv~~~TsGpG~~N~~ 90 (578)
T 3lq1_A 14 LAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAK---ASKRPVVLLCTSGTAAANYF 90 (578)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHH---HHCCCEEEEECSSHHHHTTH
T ss_pred HHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHH---hhCCCEEEEECCchhhhhhh
Confidence 333467789999997754 55544567899987557887777666544433333310 11223446777776444444
Q ss_pred HHHHHhc--CCceee
Q 017159 234 QEKLQNQ--GFEVVL 246 (376)
Q Consensus 234 ~~~L~~~--G~evv~ 246 (376)
....+++ ++.+++
T Consensus 91 ~gia~A~~d~vPll~ 105 (578)
T 3lq1_A 91 PAVAEANLSQIPLIV 105 (578)
T ss_dssp HHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcCCCeEE
Confidence 4443332 444443
No 286
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=29.63 E-value=1.3e+02 Score=27.77 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=25.1
Q ss_pred HHcCCcEEEEeCCCchhh---HHHHhccC----CCCeeccHHH---HHHHHHHhc
Q 017159 163 EQAGARCIVMPCHISHAW---HGDVSEGC----SIPFLHVGEC---VAKELKEAK 207 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~~---~d~L~~~~----~vPvl~Ivea---t~~~~~~~g 207 (376)
++..+|+++|++-+...+ ...+++.. ..|+---.+. .++.+++.|
T Consensus 69 ~~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 123 (312)
T 3o9z_A 69 RGEGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTG 123 (312)
T ss_dssp TTCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHC
T ss_pred cCCCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 467899999998764332 44555532 3455433333 344444543
No 287
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=29.50 E-value=3e+02 Score=24.46 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHcCCcEE--EEeCCCchh--------hHHHHhccCCCCee----------------ccHHHHHHHHHHhcCCCCc
Q 017159 159 RAFLEQAGARCI--VMPCHISHA--------WHGDVSEGCSIPFL----------------HVGECVAKELKEAKLKPLE 212 (376)
Q Consensus 159 ~~~L~~~Gad~I--VIaCNTAH~--------~~d~L~~~~~vPvl----------------~Iveat~~~~~~~g~k~~~ 212 (376)
++...+.|+|.| .+-...... -+-++....++|++ +.++..++.+.+.|..
T Consensus 105 v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad--- 181 (273)
T 2qjg_A 105 VEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGAD--- 181 (273)
T ss_dssp HHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCS---
T ss_pred HHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCC---
Q ss_pred CCCCceEEEeecchhhchHHHHHHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEE
Q 017159 213 AGSGVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVII 292 (376)
Q Consensus 213 ~~~~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVIL 292 (376)
+++|.++..-..+++..+..++.++.-. |......+.+.+.+..+.+.|++.|..
T Consensus 182 --------~i~~~~~~~~~~l~~i~~~~~ipvva~G-----------------Gi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 182 --------IVKTSYTGDIDSFRDVVKGCPAPVVVAG-----------------GPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp --------EEEECCCSSHHHHHHHHHHCSSCEEEEC-----------------CSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred --------EEEECCCCCHHHHHHHHHhCCCCEEEEe-----------------CCCCCCHHHHHHHHHHHHHcCCcEEEe
Q ss_pred C
Q 017159 293 G 293 (376)
Q Consensus 293 G 293 (376)
|
T Consensus 237 g 237 (273)
T 2qjg_A 237 G 237 (273)
T ss_dssp C
T ss_pred e
No 288
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=29.36 E-value=1e+02 Score=28.75 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++..--.. .+|.++.+.+++||+
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 142 (306)
T 1o5k_A 98 KLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIV 142 (306)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 3445677899999977653221 137788888888864
No 289
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=29.36 E-value=1.8e+02 Score=26.96 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.+.++++.+.|+|.|++++.|.-.+
T Consensus 35 l~~lv~~li~~Gv~gl~v~GtTGE~~ 60 (301)
T 1xky_A 35 TTKLVNYLIDNGTTAIVVGGTTGESP 60 (301)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGG
T ss_pred HHHHHHHHHHcCCCEEEECccccChh
Confidence 45556788899999999998876543
No 290
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=29.26 E-value=1.2e+02 Score=28.35 Aligned_cols=37 Identities=8% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++..--.. .+|.++.+.+++||+
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 142 (301)
T 1xky_A 98 DLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVM 142 (301)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3445678899999877553211 136778888888864
No 291
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=28.96 E-value=1.6e+02 Score=27.40 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.+.+++|.+.|+|.|++++.|.-.+
T Consensus 38 l~~lv~~li~~Gv~gi~v~GttGE~~ 63 (304)
T 3l21_A 38 AARLANHLVDQGCDGLVVSGTTGESP 63 (304)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGG
T ss_pred HHHHHHHHHHcCCCEEEeCccccchh
Confidence 45556788899999999999887653
No 292
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=28.82 E-value=4.9e+02 Score=26.68 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=17.5
Q ss_pred cCCeEEEEc-CCChHHHHHHHHHH
Q 017159 81 QANTIGIIG-GVSVSSTLNFLGKL 103 (376)
Q Consensus 81 ~~k~IGIIG-GmGp~AT~~f~~kI 103 (376)
+.+.|-||| |.+.++++..+.+.
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~~ 413 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGVR 413 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHC
Confidence 356899999 88888887776653
No 293
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=28.76 E-value=1.2e+02 Score=29.36 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCCcCCCCceEEEeecchhhc-hHHHH---HHHHhcCCceeecC
Q 017159 196 GECVAKELKEAKLKPLEAGSGVRIGVLATDATLS-AGFYQ---EKLQNQGFEVVLPD 248 (376)
Q Consensus 196 veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~-s~~Y~---~~L~~~G~evv~p~ 248 (376)
++...+.++..|. +|+.|+....++. .++++ +.|++.|+++.+.+
T Consensus 31 l~~l~~~l~~~g~--------~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~ 79 (407)
T 1vlj_A 31 IPKIGEEIKNAGI--------RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVS 79 (407)
T ss_dssp GGGHHHHHHHTTC--------CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCC--------CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEec
Confidence 3445555665543 3888888744443 34554 44666788876554
No 294
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=28.47 E-value=1.6e+02 Score=28.81 Aligned_cols=94 Identities=21% Similarity=0.157 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhh-HHHHh------------------ccCCCCeecc-------HHHHHHHHH
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHISHAW-HGDVS------------------EGCSIPFLHV-------GECVAKELK 204 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~------------------~~~~vPvl~I-------veat~~~~~ 204 (376)
++......++.|++.|+++++++--|--+. .|++. ....+|++-+ ++..++.+.
T Consensus 66 Ll~~a~~Ia~~L~~~~~e~~IlgDttYGACCVDe~aA~~v~aD~lVHyGHsCL~~~~~lpvlYVf~~~~iD~~~~~~~~~ 145 (378)
T 3lzd_A 66 LRREAEELAGFLEENNIEVFLHGEINYGACDPADREAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVVEALKENI 145 (378)
T ss_dssp GHHHHHHHHHHHHTTTCEEEEECSCCCCTTSCCHHHHHHTTCSEEEEEECCCCSCCCSSCEEEEECCCCCCCHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCceEEEEcCCcccCcccCHHHHhhcCCCEEEEcCCCcCCcccCCCEEEEeccCCCCHHHHHHHHH
Confidence 444445556667668899998865443333 33222 1234666544 233343433
Q ss_pred HhcCCCCcCCCCceEEEeecchh-hchHHHHHHHHhcCCceeecCc
Q 017159 205 EAKLKPLEAGSGVRIGVLATDAT-LSAGFYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 205 ~~g~k~~~~~~~~rVGlLaT~~T-~~s~~Y~~~L~~~G~evv~p~~ 249 (376)
+. ++ ...++|+|++|-.= -...-..+.|++.|.+++++..
T Consensus 146 ~~-~~----~~~~~i~L~~tiq~~~~l~~~~~~L~~~g~~v~i~~~ 186 (378)
T 3lzd_A 146 GE-IK----KLGRKIIVTTTAQHIHQLKEAKEFLESEGFEVSIGRG 186 (378)
T ss_dssp HH-HH----TTCSEEEEEECGGGGGGHHHHHHHHHHTTCEEECCCC
T ss_pred Hh-cc----CcCCeEEEEEcHHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 32 11 11358999998542 2223356778889999988764
No 295
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=28.23 E-value=2.4e+02 Score=26.56 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCCcCCCCceEEEeecchhhch------HHHHHHHHhcCCceee
Q 017159 197 ECVAKELKEAKLKPLEAGSGVRIGVLATDATLSA------GFYQEKLQNQGFEVVL 246 (376)
Q Consensus 197 eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s------~~Y~~~L~~~G~evv~ 246 (376)
.+.++.++..|.+ +|+++..+...-. ..+.+.+++.|+++..
T Consensus 143 ~a~~~~~~~~~w~--------~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~ 190 (441)
T 1jdp_A 143 EMMLALFRHHHWS--------RAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSI 190 (441)
T ss_dssp HHHHHHHHHHTCC--------EEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhcCCc--------EEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEE
Confidence 3445555555554 9999988654222 2356777888987753
No 296
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=28.06 E-value=1.8e+02 Score=26.82 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.++++.+.|+|.+++.+.|.-.+ ++...+.. .+||+ |+ .+.+ ++++++.|..
T Consensus 24 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad----- 98 (291)
T 3tak_A 24 LEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGAD----- 98 (291)
T ss_dssp HHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCS-----
T ss_pred HHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC-----
Confidence 45556788899999999999887543 22222222 47766 22 2233 3445555653
Q ss_pred CCceEEEeecchhh---ch---HHHHHHHHhcCCceeecCc
Q 017159 215 SGVRIGVLATDATL---SA---GFYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 215 ~~~rVGlLaT~~T~---~s---~~Y~~~L~~~G~evv~p~~ 249 (376)
-| ++.+++-. +. .+|+...++.++.+++-+.
T Consensus 99 ---av-lv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3tak_A 99 ---AA-LLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNV 135 (291)
T ss_dssp ---EE-EEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ---EE-EEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 23 34444421 12 2466666666888876654
No 297
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=28.02 E-value=2.2e+02 Score=27.23 Aligned_cols=40 Identities=15% Similarity=-0.013 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch-------hhHHHHhccCCCCeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISH-------AWHGDVSEGCSIPFLH 194 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH-------~~~d~L~~~~~vPvl~ 194 (376)
..+.++.|++.|+|+|-+.+-+.+ .+..++++.+++||+.
T Consensus 253 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~ 299 (364)
T 1vyr_A 253 ALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 299 (364)
T ss_dssp HHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEE
Confidence 455667899999999999875421 2355666666677664
No 298
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=28.00 E-value=1.1e+02 Score=28.36 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=59.8
Q ss_pred HHHHcCCcEEEEeCC------Cchhh-HHHHhccCCCCeeccHHH-----------------HHHHHHHhcCCCCcCCCC
Q 017159 161 FLEQAGARCIVMPCH------ISHAW-HGDVSEGCSIPFLHVGEC-----------------VAKELKEAKLKPLEAGSG 216 (376)
Q Consensus 161 ~L~~~Gad~IVIaCN------TAH~~-~d~L~~~~~vPvl~Ivea-----------------t~~~~~~~g~k~~~~~~~ 216 (376)
..++.|||-|=+|+| |.++. +..+++.+++||.=|+.+ -++.+++.|.. .
T Consensus 16 ~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~Gad------G 89 (256)
T 1twd_A 16 TAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFP------G 89 (256)
T ss_dssp HHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCS------E
T ss_pred HHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCC------E
Confidence 356799999999987 44444 777888889998887643 35556666653 3
Q ss_pred ceEEEeecchhhchHHHHHHHHhc-CCceeec
Q 017159 217 VRIGVLATDATLSAGFYQEKLQNQ-GFEVVLP 247 (376)
Q Consensus 217 ~rVGlLaT~~T~~s~~Y~~~L~~~-G~evv~p 247 (376)
-.+|+|..++++....-++.++.. |.++..-
T Consensus 90 vV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTFH 121 (256)
T 1twd_A 90 LVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFH 121 (256)
T ss_dssp EEECCBCTTSSBCHHHHHHHHHHHTTSEEEEC
T ss_pred EEEeeECCCCCcCHHHHHHHHHHhCCCcEEEE
Confidence 478999999999998888888664 6666543
No 299
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=27.88 E-value=1.5e+02 Score=26.45 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=33.2
Q ss_pred CceEEEeecchh---hchHHHHH-------HHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhC
Q 017159 216 GVRIGVLATDAT---LSAGFYQE-------KLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVR 285 (376)
Q Consensus 216 ~~rVGlLaT~~T---~~s~~Y~~-------~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~ 285 (376)
.++||++-.... +...+|.. .++++|+.+++-..... .+...+.++.+..+
T Consensus 22 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-------------------~~~~~~~~~~l~~~ 82 (305)
T 3huu_A 22 TLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENS-------------------GDLYHEVKTMIQSK 82 (305)
T ss_dssp CCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSH-------------------HHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCC-------------------hHHHHHHHHHHHhC
Confidence 458998866511 34445543 34556777765432110 11123344556667
Q ss_pred CCCEEEECCCc
Q 017159 286 AVNAVIIGSDE 296 (376)
Q Consensus 286 gaDaVILGCTE 296 (376)
++|+||+..++
T Consensus 83 ~vdgiIi~~~~ 93 (305)
T 3huu_A 83 SVDGFILLYSL 93 (305)
T ss_dssp CCSEEEESSCB
T ss_pred CCCEEEEeCCc
Confidence 78888876544
No 300
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=27.88 E-value=1.1e+02 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++..--.. .+|.++.+.+++||+
T Consensus 102 ~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPii 146 (304)
T 3cpr_A 102 ELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPIC 146 (304)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3445678899999877543211 136778888888864
No 301
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=27.79 E-value=91 Score=29.61 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++..--.. .+|.+|.+.+++||+
T Consensus 120 ~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPii 164 (332)
T 2r8w_A 120 ALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLA 164 (332)
T ss_dssp HHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3445677899999977653221 136777788888864
No 302
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=27.75 E-value=71 Score=29.98 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCchhh-HHHHhccCCCCeeccHHHHHHHHHHh-cCCCCcCCCCceEEEeecchh
Q 017159 150 AVSQNLRHKRAFLEQAGARCIVMPCHISHAW-HGDVSEGCSIPFLHVGECVAKELKEA-KLKPLEAGSGVRIGVLATDAT 227 (376)
Q Consensus 150 ~i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~-~d~L~~~~~vPvl~Iveat~~~~~~~-g~k~~~~~~~~rVGlLaT~~T 227 (376)
.+.+.+.+.++.+.++|||+|.+.--.+... -+..++ +..|.+ ..+++.+++. |. .+-+. +.++
T Consensus 176 ~i~~~~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~e-f~~p~~---k~i~~~i~~~~g~---------~~i~~-~~g~ 241 (338)
T 2eja_A 176 ILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGE-YVYPYV---NYLISELKDFSDT---------PVIYF-FRGS 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHH-HTHHHH---HHHHHHHHHHCCC---------CEEEE-ESSH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecCccccCCHHHHHH-HhHHHH---HHHHHHHhhcCCC---------CEEEE-cCCc
Confidence 3444555556666789999998876554433 222332 233432 3445555554 32 34334 3454
Q ss_pred hchHHHHHHHHhcCCceeecCc
Q 017159 228 LSAGFYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 228 ~~s~~Y~~~L~~~G~evv~p~~ 249 (376)
..++. .+.+.|++++-++.
T Consensus 242 --~~~l~-~l~~~g~d~~~~d~ 260 (338)
T 2eja_A 242 --SSFID-LAVDYRADALSVDW 260 (338)
T ss_dssp --HHHHH-HHTTSCCSEEECCT
T ss_pred --HHHHH-HHHHcCCCEEEeCC
Confidence 33444 46777888887653
No 303
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=27.68 E-value=1.2e+02 Score=28.39 Aligned_cols=83 Identities=12% Similarity=0.001 Sum_probs=0.0
Q ss_pred EEEEc--CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 85 IGIIG--GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 85 IGIIG--GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
|-+.| |-++.=|.+=.+++++.+.+.-....|+|.-- +...... ..+.++..
T Consensus 52 l~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv------------------g~~~t~~--------ai~la~~A 105 (307)
T 3s5o_A 52 FVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGS------------------GCESTQA--------TVEMTVSM 105 (307)
T ss_dssp EEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEEC------------------CCSSHHH--------HHHHHHHH
T ss_pred EEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEec------------------CCCCHHH--------HHHHHHHH
Q ss_pred HHcCCcEEEEeCCCchh----------hHHHHhccCCCCee
Q 017159 163 EQAGARCIVMPCHISHA----------WHGDVSEGCSIPFL 193 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~----------~~d~L~~~~~vPvl 193 (376)
++.|||++++.+--... +|.++.+.+++||+
T Consensus 106 ~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPii 146 (307)
T 3s5o_A 106 AQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVV 146 (307)
T ss_dssp HHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEE
No 304
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=27.29 E-value=1.7e+02 Score=27.06 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.+.+++|.+.|+|.|++++.|.-.+
T Consensus 25 l~~lv~~li~~Gv~gl~v~GttGE~~ 50 (292)
T 3daq_A 25 LKAHVNFLLENNAQAIIVNGTTAESP 50 (292)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGGTGG
T ss_pred HHHHHHHHHHcCCCEEEECccccccc
Confidence 45556788899999999999887553
No 305
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=27.19 E-value=1.2e+02 Score=28.82 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++..--.. .+|.+|.+.+++||+
T Consensus 117 ~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPii 161 (343)
T 2v9d_A 117 ELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVM 161 (343)
T ss_dssp HHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3445677899999977543211 137788888888864
No 306
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=27.18 E-value=68 Score=30.45 Aligned_cols=88 Identities=9% Similarity=0.095 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=... |-.++++.+..++||||... +.+. .+.+. |- -.+.+|+++|=
T Consensus 90 l~DTarvls~~-~D~iviR~~~-~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~-----l~glkva~vGD 162 (309)
T 4f2g_A 90 VEDSAQVISRM-VDIIMIRTFE-QDIIQRFAENSRVPVINGLTNEYHPCQVLADIFTYYEHRGP-----IRGKTVAWVGD 162 (309)
T ss_dssp HHHHHHHHHHH-CSEEEEECSC-HHHHHHHHHTCSSCEEEEECSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEecCC-HHHHHHHHHhCCCCEEECCCCccCcHHHHHHHHHHHHHhCC-----CCCCEEEEECC
Confidence 45556778888 9999999874 77889999999999998642 1111 22222 21 23568999997
Q ss_pred chhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
..- -.+.+-..+...|.++.+-.++
T Consensus 163 ~~~-va~Sl~~~~~~~G~~v~~~~P~ 187 (309)
T 4f2g_A 163 ANN-MLYTWIQAARILDFKLQLSTPP 187 (309)
T ss_dssp CCH-HHHHHHHHHHHHTCEEEEECCG
T ss_pred Ccc-hHHHHHHHHHHcCCEEEEECCc
Confidence 432 2334555677779888766543
No 307
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=26.87 E-value=1.8e+02 Score=27.27 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.++++.+.|+|.|++++.|.-.+ ++...+.. .+||+ |+ .+.+ ++++++.|..
T Consensus 46 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gad----- 120 (314)
T 3qze_A 46 LAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGAD----- 120 (314)
T ss_dssp HHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS-----
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC-----
Confidence 45556788899999999998887543 22222222 47866 22 2333 3344455543
Q ss_pred CCceEEEeecchhhc---h---HHHHHHHHhcCCceeecCc
Q 017159 215 SGVRIGVLATDATLS---A---GFYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~---s---~~Y~~~L~~~G~evv~p~~ 249 (376)
-| ++.+++-.+ . .+|+...++.++.+++-+.
T Consensus 121 ---av-lv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 157 (314)
T 3qze_A 121 ---AC-LLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNV 157 (314)
T ss_dssp ---EE-EEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred ---EE-EEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 23 344443211 2 3466666667888877654
No 308
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=26.86 E-value=73 Score=30.66 Aligned_cols=40 Identities=8% Similarity=0.013 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch-------hhHHHHhccCCCCeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISH-------AWHGDVSEGCSIPFLH 194 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH-------~~~d~L~~~~~vPvl~ 194 (376)
..+.++.|++.|+|+|.+..-|.+ .+..++++.+++||+.
T Consensus 252 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~ 298 (365)
T 2gou_A 252 YTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIY 298 (365)
T ss_dssp HHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEE
Confidence 455667899999999998775421 1234455555555543
No 309
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=26.84 E-value=1.3e+02 Score=27.81 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCcEEEEeCCC---ch-----hhHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHI---SH-----AWHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNT---AH-----~~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++..-- .+ .+|+++.+.+++||+
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPii 131 (291)
T 3tak_A 87 ELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLI 131 (291)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 34466788999998765422 11 137788888888864
No 310
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=26.82 E-value=1.2e+02 Score=28.20 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh---------hHHHHhccC---CCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISHA---------WHGDVSEGC---SIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~---------~~d~L~~~~---~vPvl 193 (376)
+.++..++.|||++++..--... +|.++.+.+ ++||+
T Consensus 89 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPii 137 (294)
T 3b4u_A 89 DQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDIL 137 (294)
T ss_dssp HHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEE
Confidence 34456788999999775432211 367777777 78853
No 311
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=26.81 E-value=1.5e+02 Score=27.74 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.+.+++|.+.|+|.|++++.|.-.+
T Consensus 47 l~~lv~~li~~Gv~Gi~v~GtTGE~~ 72 (315)
T 3na8_A 47 LGRSIERLIDGGVHAIAPLGSTGEGA 72 (315)
T ss_dssp HHHHHHHHHHTTCSEEECSSGGGTGG
T ss_pred HHHHHHHHHHcCCCEEEECccccChh
Confidence 45556788899999999999887543
No 312
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=26.80 E-value=1.5e+02 Score=26.30 Aligned_cols=75 Identities=17% Similarity=0.030 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCeec-----cHHHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 157 HKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFLH-----VGECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl~-----Iveat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
+.++.+++.|||.|.+..-++. ..+.++++.+++|++- -.+. ++.+.+.|.. -.+++
T Consensus 34 ~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~-i~~~~~~Gad---------~v~lg 103 (266)
T 2w6r_A 34 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEH-FLEAFLAGAD---------KALAA 103 (266)
T ss_dssp HHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHH-HHHHHHHTCS---------EEECC
T ss_pred HHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHH-HHHHHHcCCc---------Hhhhh
Confidence 3445678899999998653321 2367888888999884 2233 3345556653 33466
Q ss_pred cchh-h--chHHHHHHHHhcC
Q 017159 224 TDAT-L--SAGFYQEKLQNQG 241 (376)
Q Consensus 224 T~~T-~--~s~~Y~~~L~~~G 241 (376)
+..- . ....+.+.++.+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~g 124 (266)
T 2w6r_A 104 SVFHFREIDMRELKEYLKKHG 124 (266)
T ss_dssp CCC------CHHHHHHCC---
T ss_pred HHHHhCCCCHHHHHHHHHHcC
Confidence 6543 2 4455666655556
No 313
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=26.77 E-value=2.2e+02 Score=28.09 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc
Q 017159 155 LRHKRAFLEQAGARCIVMPCHIS 177 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTA 177 (376)
+.+.++.++++|+|.|+ ..||.
T Consensus 285 i~~iA~~a~~aGaDgIi-v~Ntt 306 (415)
T 3i65_A 285 KKEIADVLLETNIDGMI-ISNTT 306 (415)
T ss_dssp HHHHHHHHHHHTCSEEE-ECCCB
T ss_pred HHHHHHHHHHcCCcEEE-EeCCC
Confidence 45666788999999886 55653
No 314
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=26.64 E-value=3.1e+02 Score=23.97 Aligned_cols=78 Identities=18% Similarity=0.036 Sum_probs=44.3
Q ss_pred HHHHHHHcCCcEEEEeCCCc--h------hhHHHHhccCCCCeeccH----HHHHHHHHHhcCCCCcCCCCceEEEeecc
Q 017159 158 KRAFLEQAGARCIVMPCHIS--H------AWHGDVSEGCSIPFLHVG----ECVAKELKEAKLKPLEAGSGVRIGVLATD 225 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTA--H------~~~d~L~~~~~vPvl~Iv----eat~~~~~~~g~k~~~~~~~~rVGlLaT~ 225 (376)
.++.+++.|++.|++...+. + ..+.++++.+++|++-.. ..-+..+.+.|.. -.++|+.
T Consensus 156 ~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gad---------gv~vGsa 226 (253)
T 1thf_D 156 WVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGAD---------AALAASV 226 (253)
T ss_dssp HHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCS---------EEEESHH
T ss_pred HHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCh---------HHHHHHH
Confidence 34557779999887754321 1 136778888899988642 2444555566542 3345553
Q ss_pred hhhchH----HHHHHHHhcCCcee
Q 017159 226 ATLSAG----FYQEKLQNQGFEVV 245 (376)
Q Consensus 226 ~T~~s~----~Y~~~L~~~G~evv 245 (376)
. +... -..+.+.+.|+.+.
T Consensus 227 l-~~~~~~~~~~~~~l~~~g~~~~ 249 (253)
T 1thf_D 227 F-HFREIDVRELKEYLKKHGVNVR 249 (253)
T ss_dssp H-HTTCSCHHHHHHHHHHTTCCCC
T ss_pred H-HcCCCCHHHHHHHHHHcCCccc
Confidence 3 3332 13344666677654
No 315
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=26.54 E-value=1.2e+02 Score=26.83 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
+.+.++.++++|+|+| -+||
T Consensus 134 ~~~~a~~a~eaGad~I--~tst 153 (225)
T 1mzh_A 134 IKKAVEICIEAGADFI--KTST 153 (225)
T ss_dssp HHHHHHHHHHHTCSEE--ECCC
T ss_pred HHHHHHHHHHhCCCEE--EECC
Confidence 4455677888999999 5555
No 316
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=26.53 E-value=1.9e+02 Score=26.56 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA 179 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~ 179 (376)
+.+.++++.+.|+|.|++++.|.-.
T Consensus 24 l~~lv~~li~~Gv~gl~~~GttGE~ 48 (291)
T 3a5f_A 24 LSELIEWHIKSKTDAIIVCGTTGEA 48 (291)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGGTG
T ss_pred HHHHHHHHHHcCCCEEEECccccCh
Confidence 4555678888999999999887644
No 317
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=26.35 E-value=1.9e+02 Score=26.81 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.+.+++|.+.|+|.|++++.|.-.+
T Consensus 34 l~~lv~~li~~Gv~Gl~v~GtTGE~~ 59 (303)
T 2wkj_A 34 LRRLVQFNIQQGIDGLYVGGSTGEAF 59 (303)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGG
T ss_pred HHHHHHHHHHcCCCEEEECeeccChh
Confidence 45556788899999999998876543
No 318
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=26.32 E-value=1.1e+02 Score=30.25 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=44.5
Q ss_pred cCCcEEEEeCCC--chhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch-hhchHHHHHHHHhcC
Q 017159 165 AGARCIVMPCHI--SHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA-TLSAGFYQEKLQNQG 241 (376)
Q Consensus 165 ~Gad~IVIaCNT--AH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~-T~~s~~Y~~~L~~~G 241 (376)
.|+|++|+.-.- .|+.+.+.++ .++|+++..+...+.+.. .+.|+|-||.| |--+.+....|++.|
T Consensus 77 ~~a~~vv~s~~i~~~~p~~~~a~~-~~ipvl~~~~~l~~~~~~----------~~vI~VTGTnGKTTTt~ml~~iL~~~G 145 (491)
T 2f00_A 77 RDASVVVVSSAISADNPEIVAAHE-ARIPVIRRAEMLAELMRF----------RHGIAIAGTHGKTTTTAMVSSIYAEAG 145 (491)
T ss_dssp TTCSEEEECTTCCTTCHHHHHHHH-TTCCEEEHHHHHHHHHTT----------SEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHH-cCCcEEEHHHHHHHHHcC----------CCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 489988886432 1454544443 389999988865544321 13799999987 333456778888888
Q ss_pred Cc
Q 017159 242 FE 243 (376)
Q Consensus 242 ~e 243 (376)
..
T Consensus 146 ~~ 147 (491)
T 2f00_A 146 LD 147 (491)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 319
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=26.32 E-value=34 Score=32.14 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=23.1
Q ss_pred HHHcCCcEEEEeCCCchhh---HHHHhccC----CCCeeccHHHH
Q 017159 162 LEQAGARCIVMPCHISHAW---HGDVSEGC----SIPFLHVGECV 199 (376)
Q Consensus 162 L~~~Gad~IVIaCNTAH~~---~d~L~~~~----~vPvl~Iveat 199 (376)
|++..+|+|+|++-+...+ ...+++.. ..|+-.=++++
T Consensus 71 l~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea 115 (390)
T 4h3v_A 71 LERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEA 115 (390)
T ss_dssp TTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHH
T ss_pred hcCCCCCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccchhHH
Confidence 4567899999998664333 45565543 34655444443
No 320
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=26.13 E-value=1.9e+02 Score=27.28 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh---H-------HHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW---H-------GDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~---~-------d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.+++|.+.|+|.|++++.|.-.. . +.+.+.. .+||+ |+ .+.+ ++++.+.|..
T Consensus 57 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad----- 131 (332)
T 2r8w_A 57 FSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGAD----- 131 (332)
T ss_dssp HHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCS-----
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC-----
Confidence 45556788889999999999886553 1 2222222 47875 32 2333 3445555653
Q ss_pred CCceEEEeecchhhc---hH---HHHHHHHhcCCceeecCc
Q 017159 215 SGVRIGVLATDATLS---AG---FYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~---s~---~Y~~~L~~~G~evv~p~~ 249 (376)
-.++.+++-.+ .+ +|+...++-++.+++-+.
T Consensus 132 ----avlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 168 (332)
T 2r8w_A 132 ----ALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNN 168 (332)
T ss_dssp ----EEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred ----EEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 23444554211 22 355656666777776654
No 321
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=26.07 E-value=1.1e+02 Score=28.69 Aligned_cols=80 Identities=15% Similarity=0.045 Sum_probs=44.4
Q ss_pred CceEEEeecchhhchHHHHHHHHhcCCceeecCccccccchHHHHHH----HhcCChHHHHHHHHHHHHHHhhCCCCEEE
Q 017159 216 GVRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKATMEHVIIPTIEA----LNHRDMEGARNLLRIGIQLLLVRAVNAVI 291 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~~q~~~l~~~ie~----lk~G~~~~a~~~l~~~i~~L~~~gaDaVI 291 (376)
.+||+|..|.+|--+...-+.+.+.|++.++...-..........+. +..|-+.--.--++.+.+.|.+.|.+ |
T Consensus 195 vgkIaV~~GgGtsG~~~~i~~a~~~GvDt~ITGe~~~~~~~~~A~E~ginVI~AGHyATEt~Gv~aL~~~Le~~Gle--v 272 (278)
T 3rxy_A 195 LGKIAVVHGAGTNGGYAVARAYFDHGVRTVLYIHIAPEEAERLRREGGGNLIVTGHIASDLVGINRYVQALEERGVE--V 272 (278)
T ss_dssp CCSEEECCSSSSCCHHHHHHHHHHTTCCEEEESCCCHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHHHTTCE--E
T ss_pred CCEEEEEcCCCCCCcHHHHHHHHHcCCCEEEEecCchHHHHHHHHHcCCeEEEeccchHhHHHHHHHHHHHHHcCCe--e
Confidence 47899999988866544445556679999998764433211111110 12233311111234444555578988 4
Q ss_pred ECCCcc
Q 017159 292 IGSDEM 297 (376)
Q Consensus 292 LGCTEl 297 (376)
+.|..+
T Consensus 273 i~~sGl 278 (278)
T 3rxy_A 273 VRMSGL 278 (278)
T ss_dssp EECTTC
T ss_pred eccCCC
Confidence 477653
No 322
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=26.06 E-value=1.8e+02 Score=26.96 Aligned_cols=26 Identities=8% Similarity=-0.091 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.+.++++.+.|+|.|++++.|.-.+
T Consensus 30 l~~lv~~li~~Gv~gl~v~GttGE~~ 55 (301)
T 3m5v_A 30 YARLIKRQIENGIDAVVPVGTTGESA 55 (301)
T ss_dssp HHHHHHHHHHTTCCEEECSSTTTTGG
T ss_pred HHHHHHHHHHcCCCEEEECccccChh
Confidence 45556788899999999999887543
No 323
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=26.04 E-value=2.3e+02 Score=24.86 Aligned_cols=60 Identities=22% Similarity=0.366 Sum_probs=32.9
Q ss_pred CceEEEeecchhhchHHHH-------HHHHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCC
Q 017159 216 GVRIGVLATDATLSAGFYQ-------EKLQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVN 288 (376)
Q Consensus 216 ~~rVGlLaT~~T~~s~~Y~-------~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaD 288 (376)
.++||++... +...+|. +.++++|+++++-... ++.+ ...+.++.+..+++|
T Consensus 20 ~~~Ig~i~~~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---------------~~~~----~~~~~~~~l~~~~vd 78 (293)
T 2iks_A 20 TRSIGLVIPD--LENTSYTRIANYLERQARQRGYQLLIACSE---------------DQPD----NEMRCIEHLLQRQVD 78 (293)
T ss_dssp CCEEEEEESC--SCSHHHHHHHHHHHHHHHHTTCEEEEEECT---------------TCHH----HHHHHHHHHHHTTCS
T ss_pred CcEEEEEeCC--CcCcHHHHHHHHHHHHHHHCCCEEEEEcCC---------------CCHH----HHHHHHHHHHHcCCC
Confidence 4589988753 3344444 3445567776653211 1111 112334556677899
Q ss_pred EEEECCCc
Q 017159 289 AVIIGSDE 296 (376)
Q Consensus 289 aVILGCTE 296 (376)
+||+..+.
T Consensus 79 gii~~~~~ 86 (293)
T 2iks_A 79 AIIVSTSL 86 (293)
T ss_dssp EEEECCSS
T ss_pred EEEEeCCC
Confidence 99987654
No 324
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=26.00 E-value=1.6e+02 Score=27.17 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcC-CcEEEEeCCC
Q 017159 155 LRHKRAFLEQAG-ARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~G-ad~IVIaCNT 176 (376)
+.+.++.++++| +|+|++..-|
T Consensus 176 ~~~~a~~~~~aG~~d~i~v~~~~ 198 (314)
T 2e6f_A 176 FDTAAAVLNEFPLVKFVTCVNSV 198 (314)
T ss_dssp HHHHHHHHHTCTTEEEEEECCCE
T ss_pred HHHHHHHHHhcCCceEEEEeCCC
Confidence 344567788999 9999877644
No 325
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=26.00 E-value=1e+02 Score=28.58 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=24.7
Q ss_pred HHHHHHHHcCCcEEEEeCCC---chh-----hHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHI---SHA-----WHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNT---AH~-----~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++..-- .+. +|+++.+.+++||+
T Consensus 93 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPii 137 (297)
T 3flu_A 93 ALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMI 137 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 34466788999998766422 111 37788888888864
No 326
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=25.97 E-value=1.2e+02 Score=28.42 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCc--------hhhHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHIS--------HAWHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTA--------H~~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++..--. -.+|+++.+.+++||+
T Consensus 109 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 153 (314)
T 3qze_A 109 ALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQI 153 (314)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEE
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 344667889999987765311 1137788888888864
No 327
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=25.92 E-value=2.4e+02 Score=27.09 Aligned_cols=22 Identities=9% Similarity=-0.106 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
..+.++.|++.|+|+|-+..-+
T Consensus 257 ~~~la~~le~~Gvd~i~v~~~~ 278 (377)
T 2r14_A 257 AFYLAGELDRRGLAYLHFNEPD 278 (377)
T ss_dssp HHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEeCCc
Confidence 4556778999999999887654
No 328
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=25.76 E-value=1.7e+02 Score=28.16 Aligned_cols=74 Identities=8% Similarity=0.001 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeeccH---HHHHHHHHHhcCCCCcCCCCceEEEeecchhhch
Q 017159 155 LRHKRAFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHVG---ECVAKELKEAKLKPLEAGSGVRIGVLATDATLSA 230 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~Iv---eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s 230 (376)
..+.++.|+++|+|+|-+.+-+. ..+..++++.+++||+... .+.++.+.+.|. ..-|+ +|......-
T Consensus 244 ~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~g~-------aD~V~-iGR~~lanP 315 (362)
T 4ab4_A 244 FTYVARELGKRGIAFICSREREADDSIGPLIKEAFGGPYIVNERFDKASANAALASGK-------ADAVA-FGVPFIANP 315 (362)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTS-------CSEEE-ESHHHHHCT
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCC-------ccEEE-ECHHhHhCc
Confidence 45567789999999998877652 1357788888888887542 233444444431 11233 666554444
Q ss_pred HHHHHH
Q 017159 231 GFYQEK 236 (376)
Q Consensus 231 ~~Y~~~ 236 (376)
.+..+.
T Consensus 316 dl~~k~ 321 (362)
T 4ab4_A 316 DLPARL 321 (362)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 444433
No 329
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=25.54 E-value=2.1e+02 Score=23.71 Aligned_cols=100 Identities=10% Similarity=-0.096 Sum_probs=0.0
Q ss_pred cccccCCeEEEEc-CCChHHHHHHHHHHHHHhhhCCCCCCCeEeec-CCcchhHHhhhc----hhhhccccccCcchHHH
Q 017159 77 SLLNQANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCN-DPALNEELFHAS----VHSLKSKTVQLDHIRGA 150 (376)
Q Consensus 77 ~~~~~~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s-~p~ipd~l~~~s----~~~~~~~~~~~~~~~~~ 150 (376)
..|.+.+.|=++| |.+..++.++..++.. -..++..++ ++.........- .-..-+.......
T Consensus 34 ~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~-------~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~---- 102 (187)
T 3sho_A 34 EAICRADHVIVVGMGFSAAVAVFLGHGLNS-------LGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRD---- 102 (187)
T ss_dssp HHHHHCSEEEEECCGGGHHHHHHHHHHHHH-------TTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHH----
T ss_pred HHHHhCCEEEEEecCchHHHHHHHHHHHHh-------cCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHH----
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCC
Q 017159 151 VSQNLRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIP 191 (376)
Q Consensus 151 i~~~l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vP 191 (376)
+.+.++.+.+.|+..|+|.+|.-++..+.-.-.+.+|
T Consensus 103 ----~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 139 (187)
T 3sho_A 103 ----TVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAA 139 (187)
T ss_dssp ----HHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECC
T ss_pred ----HHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEec
No 330
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=25.46 E-value=90 Score=29.24 Aligned_cols=45 Identities=11% Similarity=-0.062 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHc-CCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 149 GAVSQNLRHKRAFLEQA-GARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 149 ~~i~~~l~~~~~~L~~~-Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+-+..++++.++.+.+. |+..+..+|++ ..+++.+.+ +++.++++
T Consensus 213 ef~~p~~k~i~~~i~~~~g~~~i~~~~g~-~~~l~~l~~-~g~d~~~~ 258 (338)
T 2eja_A 213 EYVYPYVNYLISELKDFSDTPVIYFFRGS-SSFIDLAVD-YRADALSV 258 (338)
T ss_dssp HHTHHHHHHHHHHHHHHCCCCEEEEESSH-HHHHHHHTT-SCCSEEEC
T ss_pred HHhHHHHHHHHHHHhhcCCCCEEEEcCCc-HHHHHHHHH-cCCCEEEe
Confidence 34666777777778776 89999999998 667888765 46777775
No 331
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=25.24 E-value=2e+02 Score=26.39 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh---H-------HHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW---H-------GDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~---~-------d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.++++.+.|+|.|++++.|.-.. . +...+.. .+||+ |+ .+.+ ++++++.|..
T Consensus 23 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad----- 97 (289)
T 2yxg_A 23 LEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGAD----- 97 (289)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCS-----
T ss_pred HHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC-----
Confidence 45556788899999999998876543 1 2222222 47875 32 2233 3445555653
Q ss_pred CCceEEEeecchhh---chH---HHHHHHHhcCCceeecCc
Q 017159 215 SGVRIGVLATDATL---SAG---FYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 215 ~~~rVGlLaT~~T~---~s~---~Y~~~L~~~G~evv~p~~ 249 (376)
-.++.+++-. +.+ +|+...++.++.+++-+.
T Consensus 98 ----avlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 134 (289)
T 2yxg_A 98 ----AVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNV 134 (289)
T ss_dssp ----EEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred ----EEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2334454421 122 355556666777776553
No 332
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=25.19 E-value=2e+02 Score=27.01 Aligned_cols=86 Identities=8% Similarity=0.034 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.+++|.+.|+|.|++++.|.-.+ ++...+.. ++||+ |+ .+.+ ++++.+.|..
T Consensus 45 l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad----- 119 (315)
T 3si9_A 45 FCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGAD----- 119 (315)
T ss_dssp HHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS-----
T ss_pred HHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC-----
Confidence 45556788899999999999886543 12222222 47765 22 2333 3345555543
Q ss_pred CCceEEEeecchhh---ch---HHHHHHHHhcCCceeecCc
Q 017159 215 SGVRIGVLATDATL---SA---GFYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 215 ~~~rVGlLaT~~T~---~s---~~Y~~~L~~~G~evv~p~~ 249 (376)
-| ++.+++-. +. .+|+...++.++.+++-+.
T Consensus 120 ---av-lv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 156 (315)
T 3si9_A 120 ---AV-LVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNI 156 (315)
T ss_dssp ---EE-EEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred ---EE-EECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeC
Confidence 23 34444321 12 2456666666888877654
No 333
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=25.15 E-value=2.1e+02 Score=26.23 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCC--------------------------------chhhHHHHhccC--CCCeecc---
Q 017159 153 QNLRHKRAFLEQAGARCIVMPCHI--------------------------------SHAWHGDVSEGC--SIPFLHV--- 195 (376)
Q Consensus 153 ~~l~~~~~~L~~~Gad~IVIaCNT--------------------------------AH~~~d~L~~~~--~vPvl~I--- 195 (376)
+.+.+.++.++++|+|+|++..-| +-.++.++++.+ ++||+..
T Consensus 172 ~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI 251 (311)
T 1jub_A 172 VHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGI 251 (311)
T ss_dssp HHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSC
T ss_pred HHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCC
Q ss_pred --HHHHHHHHHHhcCCCCcCCCCceEEEeecchhh-chHHHHHHHHh
Q 017159 196 --GECVAKELKEAKLKPLEAGSGVRIGVLATDATL-SAGFYQEKLQN 239 (376)
Q Consensus 196 --veat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~-~s~~Y~~~L~~ 239 (376)
.+.+.+.+ ..|. ....+||.... .-.++++..+.
T Consensus 252 ~~~~da~~~l-~~GA---------d~V~vg~~~l~~~p~~~~~i~~~ 288 (311)
T 1jub_A 252 ETGQDAFEHL-LCGA---------TMLQIGTALHKEGPAIFDRIIKE 288 (311)
T ss_dssp CSHHHHHHHH-HHTC---------SEEEECHHHHHHCTHHHHHHHHH
T ss_pred CCHHHHHHHH-HcCC---------CEEEEchHHHhcCcHHHHHHHHH
No 334
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=25.03 E-value=1.6e+02 Score=27.57 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC--CCCee-ccH----HHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC--SIPFL-HVG----ECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~--~vPvl-~Iv----eat---~~~~~~~g~k~~~~~ 214 (376)
+.+.+++|.+.|+|.|++++.|.-.+ ++...+.. .+||+ |+. +.+ ++++.+.|..
T Consensus 34 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad----- 108 (318)
T 3qfe_A 34 QERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGAN----- 108 (318)
T ss_dssp HHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCS-----
T ss_pred HHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCC-----
Confidence 45556789899999999999887543 22222222 57866 332 222 4455555653
Q ss_pred CCceEEEeecc-hh---h-chH---HHHHHHHhcCCceeecCcc
Q 017159 215 SGVRIGVLATD-AT---L-SAG---FYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 215 ~~~rVGlLaT~-~T---~-~s~---~Y~~~L~~~G~evv~p~~~ 250 (376)
-.++.++ +- . +.+ +|+...++.++.+++-+.+
T Consensus 109 ----avlv~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P 148 (318)
T 3qfe_A 109 ----YVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFP 148 (318)
T ss_dssp ----EEEECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEECC
T ss_pred ----EEEEeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 3344555 22 1 223 3556566668888766543
No 335
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=24.97 E-value=1.1e+02 Score=26.94 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=18.5
Q ss_pred CCceEEEeecchhhchHHHH-------HHHHhcCCceeec
Q 017159 215 SGVRIGVLATDATLSAGFYQ-------EKLQNQGFEVVLP 247 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~s~~Y~-------~~L~~~G~evv~p 247 (376)
..++||++.... ...+|. +.++++|+++.+-
T Consensus 6 ~s~~Igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~~ 43 (276)
T 3jy6_A 6 SSKLIAVIVANI--DDYFSTELFKGISSILESRGYIGVLF 43 (276)
T ss_dssp CCCEEEEEESCT--TSHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCcEEEEEeCCC--CchHHHHHHHHHHHHHHHCCCEEEEE
Confidence 346899887642 344444 3455667777654
No 336
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=24.90 E-value=1.1e+02 Score=28.50 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=25.3
Q ss_pred HHcCCcEEEEeCCCchhh---HHHHhccC----CCCeeccHHH---HHHHHHHhc
Q 017159 163 EQAGARCIVMPCHISHAW---HGDVSEGC----SIPFLHVGEC---VAKELKEAK 207 (376)
Q Consensus 163 ~~~Gad~IVIaCNTAH~~---~d~L~~~~----~vPvl~Ivea---t~~~~~~~g 207 (376)
.+..+|+++|++.+...+ ...+++.. ..|+-.-.+. .++.+++.|
T Consensus 70 ~~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 124 (318)
T 3oa2_A 70 SATALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETD 124 (318)
T ss_dssp TTTSCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHT
T ss_pred cCCCCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 367899999998764332 44555532 4565443333 344444443
No 337
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=24.80 E-value=3.5e+02 Score=23.69 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=24.1
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
.+.|++.++|+||++... +..=+++-+.....++|+
T Consensus 73 ~~~l~~~~~Dliv~a~y~-~il~~~~l~~~~~~~iNi 108 (216)
T 2ywr_A 73 ALELKKKGVELVVLAGFM-RILSHNFLKYFPNKVINI 108 (216)
T ss_dssp HHHHHHTTCCEEEESSCC-SCCCHHHHTTSTTCEEEE
T ss_pred HHHHHhcCCCEEEEeCch-hhCCHHHHhhccCCeEEE
Confidence 456788999999988763 555455555555566665
No 338
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=24.69 E-value=2.1e+02 Score=26.43 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA 179 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~ 179 (376)
+.+.++++.+.|+|.|++++.|.-.
T Consensus 23 l~~lv~~li~~Gv~gl~~~GttGE~ 47 (294)
T 2ehh_A 23 LGNLIEFHVDNGTDAILVCGTTGES 47 (294)
T ss_dssp HHHHHHHHHTTTCCEEEESSTTTTG
T ss_pred HHHHHHHHHHCCCCEEEECccccCh
Confidence 4555678889999999999887654
No 339
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=24.60 E-value=1.2e+02 Score=27.62 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHHHHHcCCcEEEEeC
Q 017159 146 HIRGAVSQNLRHKRAFLEQAGARCIVMPC 174 (376)
Q Consensus 146 ~~~~~i~~~l~~~~~~L~~~Gad~IVIaC 174 (376)
+.|+++.+.+ +.+.+.|||.+=|++
T Consensus 153 P~~~el~~~~----~~~~~~gaDIvKia~ 177 (258)
T 4h3d_A 153 PKKEEIVSRL----CRMQELGADLPKIAV 177 (258)
T ss_dssp CCHHHHHHHH----HHHHHTTCSEEEEEE
T ss_pred CCHHHHHHHH----HHHHHhCCCEEEEEE
Confidence 3457766655 457788999875555
No 340
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=24.59 E-value=1.9e+02 Score=27.00 Aligned_cols=86 Identities=12% Similarity=0.220 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.++++.+.|+|.|++++.|.-.. ++...+.. ++||+ |+ .+.+ ++++.+.|..
T Consensus 31 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad----- 105 (309)
T 3fkr_A 31 QKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAA----- 105 (309)
T ss_dssp HHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS-----
T ss_pred HHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCC-----
Confidence 45556788899999999998887543 22222322 58877 33 2333 3344555543
Q ss_pred CCceEEEeecchh------hchH---HHHHHHHhcCCceeecCc
Q 017159 215 SGVRIGVLATDAT------LSAG---FYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 215 ~~~rVGlLaT~~T------~~s~---~Y~~~L~~~G~evv~p~~ 249 (376)
-.++.+++- -+.+ +|+...++.++.+++-+.
T Consensus 106 ----avlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~ 145 (309)
T 3fkr_A 106 ----MVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDA 145 (309)
T ss_dssp ----EEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred ----EEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 233444542 1233 355555666888876554
No 341
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=24.54 E-value=2.2e+02 Score=26.43 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.++++.+.|+|.|++++.|.-.. ++...+.. .+||+ |+ .+.+ ++++++.|..
T Consensus 39 l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gad----- 113 (304)
T 3cpr_A 39 GREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGAD----- 113 (304)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCS-----
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCC-----
Confidence 45556788899999999998876443 22222222 47875 32 2333 3344445543
Q ss_pred CCceEEEeecchhh---chH---HHHHHHHhcCCceeecCc
Q 017159 215 SGVRIGVLATDATL---SAG---FYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 215 ~~~rVGlLaT~~T~---~s~---~Y~~~L~~~G~evv~p~~ 249 (376)
-.++.+++-. +.+ +|+...++-++.+++-+.
T Consensus 114 ----avlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 150 (304)
T 3cpr_A 114 ----GLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDI 150 (304)
T ss_dssp ----EEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ----EEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2334454421 223 355555556777776553
No 342
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=24.49 E-value=1.2e+02 Score=24.94 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=16.9
Q ss_pred EEEeecchhhchHHHHHHHHhcCCceeecC
Q 017159 219 IGVLATDATLSAGFYQEKLQNQGFEVVLPD 248 (376)
Q Consensus 219 VGlLaT~~T~~s~~Y~~~L~~~G~evv~p~ 248 (376)
+-|++|.+|- +.|++.|+++....
T Consensus 51 f~i~AT~GTa------~~L~~~Gi~v~~v~ 74 (143)
T 2yvq_A 51 FKLFATEATS------DWLNANNVPATPVA 74 (143)
T ss_dssp CEEEEEHHHH------HHHHHTTCCCEEEC
T ss_pred CEEEECchHH------HHHHHcCCeEEEEE
Confidence 3489999882 35677898886554
No 343
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=24.44 E-value=2.3e+02 Score=27.34 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.+.++++.+.|+|.|++++.|.-..
T Consensus 82 l~~lv~~li~~Gv~Gl~v~GTTGE~~ 107 (360)
T 4dpp_A 82 YDDLVNIQIQNGAEGVIVGGTTGEGQ 107 (360)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGG
T ss_pred HHHHHHHHHHcCCCEEEecccccChh
Confidence 45556788899999999999887543
No 344
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=24.39 E-value=68 Score=30.73 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc---hhhHHHHhccCCCC-----eeccHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 155 LRHKRAFLEQAGARCIVMPCHIS---HAWHGDVSEGCSIP-----FLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTA---H~~~d~L~~~~~vP-----vl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
..+.++.|++.|..++++.-|+. ....+.+++.+++| |+.-..+++..+. ..++|-++|+.+
T Consensus 34 a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~~~~i~ts~~~~~~~~~----------~~~~v~viG~~~ 103 (352)
T 3kc2_A 34 ASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVSPLQIIQSHTPYKSLVN----------KYSRILAVGTPS 103 (352)
T ss_dssp HHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCCGGGEECTTGGGGGGTT----------TCSEEEEESSTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCChhhEeehHHHHHHHHh----------cCCEEEEECCHH
Confidence 34455678889999988877753 33466776556665 3333333333221 235899999974
Q ss_pred hhchHHHHHHHHhcCCceee
Q 017159 227 TLSAGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 227 T~~s~~Y~~~L~~~G~evv~ 246 (376)
..+.++++|++.+.
T Consensus 104 ------l~~~l~~~G~~~v~ 117 (352)
T 3kc2_A 104 ------VRGVAEGYGFQDVV 117 (352)
T ss_dssp ------HHHHHHHHTCSEEE
T ss_pred ------HHHHHHhCCCeEec
Confidence 46678888999875
No 345
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=24.26 E-value=2.2e+02 Score=27.31 Aligned_cols=75 Identities=9% Similarity=-0.019 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc-hhhHHHHhccCCCCeeccH---HHHHHHHHHhcCCCCcCCCCceEEEeecchhhch
Q 017159 155 LRHKRAFLEQAGARCIVMPCHIS-HAWHGDVSEGCSIPFLHVG---ECVAKELKEAKLKPLEAGSGVRIGVLATDATLSA 230 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTA-H~~~d~L~~~~~vPvl~Iv---eat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s 230 (376)
..+.++.|+++|+|+|-+..-+. ..+..++++.+++||+... .+.++++.+.|. ..-|+ +|......-
T Consensus 252 ~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~Ggit~e~a~~~l~~G~-------aD~V~-iGR~~ladP 323 (361)
T 3gka_A 252 FGHVARELGRRRIAFLFARESFGGDAIGQQLKAAFGGPFIVNENFTLDSAQAALDAGQ-------ADAVA-WGKLFIANP 323 (361)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSTTCCHHHHHHHHCSCEEEESSCCHHHHHHHHHTTS-------CSEEE-ESHHHHHCT
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCC-------ccEEE-ECHHhHhCc
Confidence 45566789999999998877652 1357788888888887542 233444444431 11233 666555554
Q ss_pred HHHHHHH
Q 017159 231 GFYQEKL 237 (376)
Q Consensus 231 ~~Y~~~L 237 (376)
.+..+..
T Consensus 324 dl~~k~~ 330 (361)
T 3gka_A 324 DLPRRFK 330 (361)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 346
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=24.05 E-value=2.6e+02 Score=27.85 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-----hHHHHhccC-CCCeec--c-HHHHHHHHHHhcCC
Q 017159 157 HKRAFLEQAGARCIVMPCHISHA-----WHGDVSEGC-SIPFLH--V-GECVAKELKEAKLK 209 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~-----~~d~L~~~~-~vPvl~--I-veat~~~~~~~g~k 209 (376)
+.++.+.++|+|+|.+-++--|. .++++++.+ ++||+. + -.+.++.+.+.|.+
T Consensus 258 ~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad 319 (514)
T 1jcn_A 258 YRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVD 319 (514)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCC
Confidence 34456778999999984432222 267777777 788873 2 23345666667754
No 347
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.91 E-value=1.9e+02 Score=26.95 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC-CCCee-cc----HHHH---HHHHHHhcCCCCcCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC-SIPFL-HV----GECV---AKELKEAKLKPLEAGS 215 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~-~vPvl-~I----veat---~~~~~~~g~k~~~~~~ 215 (376)
+.+.++++.+.|+|.|++++.|.-.+ ++...+.. ++||+ |+ .+.+ ++++.+.|..
T Consensus 31 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad------ 104 (313)
T 3dz1_A 31 IDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAA------ 104 (313)
T ss_dssp HHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCS------
T ss_pred HHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCC------
Confidence 45556788899999999999887543 22223333 57776 33 2223 3445555653
Q ss_pred CceEEEeecchhhc--hH---HHHHHHHhcC--CceeecCc
Q 017159 216 GVRIGVLATDATLS--AG---FYQEKLQNQG--FEVVLPDK 249 (376)
Q Consensus 216 ~~rVGlLaT~~T~~--s~---~Y~~~L~~~G--~evv~p~~ 249 (376)
-+ ++.+++... .+ +|+...++.+ +.+++-+.
T Consensus 105 --av-lv~~P~~~~s~~~l~~~f~~va~a~~~~lPiilYn~ 142 (313)
T 3dz1_A 105 --GV-MIAPPPSLRTDEQITTYFRQATEAIGDDVPWVLQDY 142 (313)
T ss_dssp --EE-EECCCTTCCSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred --EE-EECCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence 23 344554221 22 4566666656 78776654
No 348
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=23.77 E-value=3.7e+02 Score=23.55 Aligned_cols=103 Identities=12% Similarity=0.119 Sum_probs=48.8
Q ss_pred CeEEEEc-CCChHHHHHHHHHHHHHhhhCCC-CCCCeEeecCCcchh--HHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 83 NTIGIIG-GVSVSSTLNFLGKLVWYSAKDAE-ECPPFVVCNDPALNE--ELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 83 k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq-~~~p~il~s~p~ipd--~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
++|+|+- |-|.- ++.|.+....+.. ..+-.|+.+.+.-.. +-..++.|...-...... ++++.-+ +.
T Consensus 1 ~riaVl~SG~Gs~-----L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~-~r~~~~~---~~ 71 (209)
T 1meo_A 1 ARVAVLISGTGSN-----LQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYK-NRVEFDS---AI 71 (209)
T ss_dssp CEEEEEESSSCTT-----HHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSS-SHHHHHH---HH
T ss_pred CeEEEEEECCchH-----HHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECccccC-chhhhhH---HH
Confidence 3677765 77754 7777776654433 234444444443221 122223333210100011 1122222 23
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
.+.|++.++|+||++... ...=+++-+.....+||+
T Consensus 72 ~~~l~~~~~Dliv~a~y~-~il~~~~l~~~~~~~iNi 107 (209)
T 1meo_A 72 DLVLEEFSIDIVCLAGFM-RILSGPFVQKWNGKMLNI 107 (209)
T ss_dssp HHHHHHTTCCEEEEESCC-SCCCHHHHHHTTTSEEEE
T ss_pred HHHHHhcCCCEEEEcchh-hhCCHHHHhhhcCCEEEE
Confidence 456778999999998863 333233333333444444
No 349
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=23.74 E-value=1.1e+02 Score=28.19 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++.+--.. .+|.++.+.+++||+
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPii 131 (292)
T 2ojp_A 87 SLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQI 131 (292)
T ss_dssp HHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3445677899999877553211 137788888888864
No 350
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=23.70 E-value=94 Score=28.68 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh---------hHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISHA---------WHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~---------~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++..--... +|.++.+.+++||+
T Consensus 81 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPii 126 (286)
T 2r91_A 81 ALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVF 126 (286)
T ss_dssp HHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 34456788999998775433222 36778888888864
No 351
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=23.63 E-value=3.2e+02 Score=24.72 Aligned_cols=76 Identities=16% Similarity=0.068 Sum_probs=39.5
Q ss_pred HHHHHHhcCCCCcC------CCCceEEEeecchhhchHHHH-------HHHHhcCCceeecCccccccchHHHHHHHhcC
Q 017159 200 AKELKEAKLKPLEA------GSGVRIGVLATDATLSAGFYQ-------EKLQNQGFEVVLPDKATMEHVIIPTIEALNHR 266 (376)
Q Consensus 200 ~~~~~~~g~k~~~~------~~~~rVGlLaT~~T~~s~~Y~-------~~L~~~G~evv~p~~~~q~~~l~~~ie~lk~G 266 (376)
.+.+.+.|+.|... ...++||++-... ...+|. +.++++|+.+++-....
T Consensus 46 ~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--------------- 108 (344)
T 3kjx_A 46 LAAAKELGYVPNKIAGALASNRVNLVAVIIPSL--SNMVFPEVLTGINQVLEDTELQPVVGVTDY--------------- 108 (344)
T ss_dssp HHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCS--SSSSHHHHHHHHHHHHTSSSSEEEEEECTT---------------
T ss_pred HHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCC--CcHHHHHHHHHHHHHHHHCCCEEEEEeCCC---------------
Confidence 34466678876432 2346799886542 233443 33445577765532210
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCEEEECCCc
Q 017159 267 DMEGARNLLRIGIQLLLVRAVNAVIIGSDE 296 (376)
Q Consensus 267 ~~~~a~~~l~~~i~~L~~~gaDaVILGCTE 296 (376)
+. +...+.++.+..+++|+||+..++
T Consensus 109 ~~----~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 109 LP----EKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp CH----HHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CH----HHHHHHHHHHHhCCCCEEEEECCC
Confidence 10 111233445566778888776554
No 352
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=23.62 E-value=3.6e+02 Score=23.39 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=33.6
Q ss_pred CCceEEEeecchhhchHHHH-------HHHHhcCCc-eeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCC
Q 017159 215 SGVRIGVLATDATLSAGFYQ-------EKLQNQGFE-VVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRA 286 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~s~~Y~-------~~L~~~G~e-vv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~g 286 (376)
..++||++-... ...+|. +.++++|++ +++..... +.+ .-.+.++.+..++
T Consensus 9 ~~~~Igvi~~~~--~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---------------~~~----~~~~~~~~l~~~~ 67 (277)
T 3hs3_A 9 KSKMIGIIIPDL--NNRFYAQIIDGIQEVIQKEGYTALISFSTNS---------------DVK----KYQNAIINFENNN 67 (277)
T ss_dssp CCCEEEEEESCT--TSHHHHHHHHHHHHHHHHTTCEEEEEECSSC---------------CHH----HHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCC--CChhHHHHHHHHHHHHHHCCCCEEEEEeCCC---------------ChH----HHHHHHHHHHhCC
Confidence 346899887642 344444 445667888 55433211 111 1133445566789
Q ss_pred CCEEEECC
Q 017159 287 VNAVIIGS 294 (376)
Q Consensus 287 aDaVILGC 294 (376)
+|+||+..
T Consensus 68 vdgiIi~~ 75 (277)
T 3hs3_A 68 VDGIITSA 75 (277)
T ss_dssp CSEEEEEC
T ss_pred CCEEEEcc
Confidence 99999876
No 353
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=23.59 E-value=2.3e+02 Score=28.13 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=44.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchhHHhhhchhhhccccccCcchHHHHHHHHHHHHHHH
Q 017159 83 NTIGIIGGVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNEELFHASVHSLKSKTVQLDHIRGAVSQNLRHKRAFL 162 (376)
Q Consensus 83 k~IGIIGGmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~~~L 162 (376)
.++||| ||..|-....++.......-+-. .++-+.|....| +. +.+.++..
T Consensus 266 ~~V~Ii--~gs~SD~~~~~~a~~~l~~~gi~-~~v~V~saHR~p----------------------~~----~~~~~~~~ 316 (425)
T 2h31_A 266 CRVVVL--MGSTSDLGHCEKIKKACGNFGIP-CELRVTSAHKGP----------------------DE----TLRIKAEY 316 (425)
T ss_dssp CEEEEE--ESCGGGHHHHHHHHHHHHHTTCC-EEEEECCTTTCH----------------------HH----HHHHHHHH
T ss_pred CeEEEE--ecCcccHHHHHHHHHHHHHcCCc-eEEeeeeccCCH----------------------HH----HHHHHHHH
Confidence 467777 66666666677776655543221 223222322111 22 33334556
Q ss_pred HHcCCc-EE-EEeCCCchhhHHHHhccCCCCeeccH
Q 017159 163 EQAGAR-CI-VMPCHISHAWHGDVSEGCSIPFLHVG 196 (376)
Q Consensus 163 ~~~Gad-~I-VIaCNTAH~~~d~L~~~~~vPvl~Iv 196 (376)
+..|+. +| ++|--.+|- ---+...+..|||++-
T Consensus 317 ~~~g~~~viIa~AG~~a~L-pgvva~~t~~PVIgvP 351 (425)
T 2h31_A 317 EGDGIPTVFVAVAGRSNGL-GPVMSGNTAYPVISCP 351 (425)
T ss_dssp HTTCCCEEEEEECCSSCCH-HHHHHHHCSSCEEECC
T ss_pred HHCCCCeEEEEEcCcccch-HhHHhccCCCCEEEee
Confidence 778995 33 333333342 4456666788988864
No 354
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=23.44 E-value=1.7e+02 Score=27.10 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 017159 155 LRHKRAFLEQAGARCIVMP 173 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIa 173 (376)
+.+.++.+.+.|||.|.++
T Consensus 161 ~~~~~~~~~~~G~d~i~l~ 179 (302)
T 2ftp_A 161 VAWVARELQQMGCYEVSLG 179 (302)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 4445566788999999988
No 355
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=23.40 E-value=37 Score=32.04 Aligned_cols=88 Identities=10% Similarity=0.113 Sum_probs=58.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHH-HhccCCCCeeccHH--------HHHH--HHHHh-cCCCCcCCCCceEEEe
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGD-VSEGCSIPFLHVGE--------CVAK--ELKEA-KLKPLEAGSGVRIGVL 222 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~-L~~~~~vPvl~Ive--------at~~--~~~~~-g~k~~~~~~~~rVGlL 222 (376)
+.+.++-|.+.++|+|||=... |-.+++ +.+..++||||-.+ +.+. .+++. |. -.+.+|+++
T Consensus 79 l~DTarvls~~~~D~iviR~~~-~~~~~~~la~~~~vPVINAG~g~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~v 152 (291)
T 3d6n_B 79 FFDTLKTFEGLGFDYVVFRVPF-VFFPYKEIVKSLNLRLVNAGDGTHQHPSQGLIDFFTIKEHFGE-----VKDLRVLYV 152 (291)
T ss_dssp HHHHHHHHHHTTCSEEEEEESS-CCCSCHHHHHTCSSEEEEEEETTTBCHHHHHHHHHHHHHHHSC-----CTTCEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEcCC-hHHHHHHHHHhCCCCEEeCccCCCcCcHHHHHHHHHHHHHhCC-----cCCcEEEEE
Confidence 5566678999999999999874 666777 88888999999322 1111 12222 21 235689999
Q ss_pred ec---chhhchHHHHHHHHhcCCceeecCcc
Q 017159 223 AT---DATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 223 aT---~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
|- ..+..| +-..+...|.++.+..++
T Consensus 153 GDl~~~rva~S--l~~~~~~~g~~v~~~~P~ 181 (291)
T 3d6n_B 153 GDIKHSRVFRS--GAPLLNMFGAKIGVCGPK 181 (291)
T ss_dssp SCCTTCHHHHH--HHHHHHHTTCEEEEESCG
T ss_pred CCCCCCchHHH--HHHHHHHCCCEEEEECCc
Confidence 87 333333 455677789988876654
No 356
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=23.26 E-value=72 Score=32.55 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=46.5
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhcc-CCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHH
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEG-CSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEK 236 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~-~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~ 236 (376)
++.|++.|++.+ .+|+...-++++.+.+. -++.++....+-.....+.|+-. ..++...+++|.++=....+...
T Consensus 11 v~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr---~tgk~~v~~~tsGpG~~N~~~gl 87 (590)
T 1v5e_A 11 MKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSK---FGGNLGVTVGSGGPGASHLINGL 87 (590)
T ss_dssp HHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHH---TTCCCCEEEECTTHHHHTTHHHH
T ss_pred HHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHH---HHCCCEEEEeCcChHHHHHHHHH
Confidence 466888999976 67777767778988764 46777777766655544444410 12233456778775444444433
No 357
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=23.11 E-value=3e+02 Score=26.44 Aligned_cols=39 Identities=10% Similarity=-0.160 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCch------hhHHHHhccCCCCeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISH------AWHGDVSEGCSIPFLH 194 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH------~~~d~L~~~~~vPvl~ 194 (376)
..+.++.|++.|+|+|-+.+-+.+ . ..++++.+++||+.
T Consensus 268 ~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~ir~~~~iPvi~ 312 (379)
T 3aty_A 268 TKHLCKKIEPLSLAYLHYLRGDMVNQQIGDV-VAWVRGSYSGVKIS 312 (379)
T ss_dssp HHHHHHHHGGGCCSEEEEECSCTTSCCCCCH-HHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHhCCCEEEEcCCCcCCCCccHH-HHHHHHHCCCcEEE
Confidence 445567899999999999875421 2 45555566666554
No 358
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=23.09 E-value=2.1e+02 Score=27.15 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.+++|.+.|+|.|++++.|.-.. ++.+.+.. .+||+ |+ .+.+ ++++.+.|..
T Consensus 54 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad----- 128 (343)
T 2v9d_A 54 TAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGAD----- 128 (343)
T ss_dssp HHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCS-----
T ss_pred HHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC-----
Confidence 45556788899999999998876543 22222222 58875 22 2333 3445555653
Q ss_pred CCceEEEeecchhh---chH---HHHHHHHhcCCceeecCc
Q 017159 215 SGVRIGVLATDATL---SAG---FYQEKLQNQGFEVVLPDK 249 (376)
Q Consensus 215 ~~~rVGlLaT~~T~---~s~---~Y~~~L~~~G~evv~p~~ 249 (376)
-.++.+++-. +.+ +|+...++.++.+++-+.
T Consensus 129 ----avlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 165 (343)
T 2v9d_A 129 ----GIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNF 165 (343)
T ss_dssp ----EEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred ----EEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3334455422 122 355555556777776553
No 359
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=23.03 E-value=1.6e+02 Score=29.35 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh-----hHHHHhccC-CCCeec---cHHHHHHHHHHhcCC
Q 017159 157 HKRAFLEQAGARCIVMPCHISHA-----WHGDVSEGC-SIPFLH---VGECVAKELKEAKLK 209 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~-----~~d~L~~~~-~vPvl~---Iveat~~~~~~~g~k 209 (376)
+.++.|.++|+|+|+|-+...|. +++++++.+ ++|++- .-.+.++.+.+.|.+
T Consensus 232 ~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD 293 (490)
T 4avf_A 232 ERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGAD 293 (490)
T ss_dssp HHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCS
T ss_pred HHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCC
Confidence 34556778899999987655442 256666666 677632 122345566666654
No 360
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=23.02 E-value=2.8e+02 Score=24.96 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=23.6
Q ss_pred HHHHHcCCcEEEEeCCCchhh--HHHHhc-cCCCCeecc
Q 017159 160 AFLEQAGARCIVMPCHISHAW--HGDVSE-GCSIPFLHV 195 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~--~d~L~~-~~~vPvl~I 195 (376)
+.+.+.++|+|+++||..... +.++++ ...+|+++.
T Consensus 187 ~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 225 (356)
T 3ipc_A 187 SKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAKLVSG 225 (356)
T ss_dssp HHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred HHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCcEEEe
Confidence 345668999999999865443 455543 356677654
No 361
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=23.02 E-value=1.1e+02 Score=30.84 Aligned_cols=84 Identities=8% Similarity=-0.014 Sum_probs=51.0
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHH
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKL 237 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L 237 (376)
++.|++.|++.+ .+|+.+.-++++.+.+.-++.++....+-.....+.|+-. ..+ ...++.|.++=....+....
T Consensus 10 ~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar---~tg-~~v~~~TsGpG~~N~~~gia 85 (566)
T 2vbi_A 10 AERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYAR---SNG-AAAAVVTFSVGAISAMNALG 85 (566)
T ss_dssp HHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHH---HHS-CEEEEECTTTTHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHh---hcC-CeEEEEeCCCCHHHHHHHHH
Confidence 466888999966 6777777778999987556888877776655544444410 112 45567787764444444333
Q ss_pred Hhc--CCceee
Q 017159 238 QNQ--GFEVVL 246 (376)
Q Consensus 238 ~~~--G~evv~ 246 (376)
+++ ++.+++
T Consensus 86 ~A~~~~vPll~ 96 (566)
T 2vbi_A 86 GAYAENLPVIL 96 (566)
T ss_dssp HHHHTTCCEEE
T ss_pred HHHhhCCCEEE
Confidence 332 454443
No 362
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=23.00 E-value=1.9e+02 Score=26.84 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA 179 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~ 179 (376)
+.+.++++.+.|+|.|++++.|.-.
T Consensus 23 l~~lv~~li~~Gv~gi~v~GttGE~ 47 (297)
T 2rfg_A 23 LAGLVDWQIKHGAHGLVPVGTTGES 47 (297)
T ss_dssp HHHHHHHHHHTTCSEEECSSGGGTG
T ss_pred HHHHHHHHHHcCCCEEEECccccch
Confidence 4555678889999999998877644
No 363
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=22.96 E-value=4.2e+02 Score=23.83 Aligned_cols=13 Identities=15% Similarity=0.003 Sum_probs=8.7
Q ss_pred eEEEEcCC-ChHHH
Q 017159 84 TIGIIGGV-SVSST 96 (376)
Q Consensus 84 ~IGIIGGm-Gp~AT 96 (376)
+||++.-+ |+.|.
T Consensus 9 kIG~~~plsG~~a~ 22 (353)
T 4gnr_A 9 KIGFNFEESGSLAA 22 (353)
T ss_dssp EEEEEECCSSTTHH
T ss_pred EEEEEeCCcCchhH
Confidence 79999855 55543
No 364
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=22.91 E-value=2.2e+02 Score=26.41 Aligned_cols=25 Identities=4% Similarity=0.137 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA 179 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~ 179 (376)
+.+.+++|.+.|+|.|++++.|.-.
T Consensus 35 l~~lv~~li~~Gv~gl~v~GtTGE~ 59 (306)
T 1o5k_A 35 YERLVRYQLENGVNALIVLGTTGES 59 (306)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGGTG
T ss_pred HHHHHHHHHHcCCCEEEeCccccch
Confidence 4555678889999999999887644
No 365
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=22.74 E-value=69 Score=32.63 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=49.7
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHH
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKL 237 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L 237 (376)
++.|++.|++.| .+|....-++++.+.+.-++.++....+-.....+.|+-. ..++...+++|.++=....+....
T Consensus 19 ~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar---~tg~p~v~~~TsGpG~~N~~~gv~ 95 (590)
T 1ybh_A 19 VEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYAR---SSGKPGICIATSGPGATNLVSGLA 95 (590)
T ss_dssp HHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHH---HHSSCEEEEECTTHHHHTTHHHHH
T ss_pred HHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHH---HHCCCEEEEeccCchHHHHHHHHH
Confidence 466888999977 5566555567899976556777777666544444444310 112234567787765444444444
Q ss_pred Hhc--CCceee
Q 017159 238 QNQ--GFEVVL 246 (376)
Q Consensus 238 ~~~--G~evv~ 246 (376)
+++ ++.+++
T Consensus 96 ~A~~~~vPll~ 106 (590)
T 1ybh_A 96 DALLDSVPLVA 106 (590)
T ss_dssp HHHHHTCCEEE
T ss_pred HHHhhCCCEEE
Confidence 332 555544
No 366
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=22.73 E-value=5.2e+02 Score=24.91 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=13.6
Q ss_pred HHHHHhhCCCCEEEECCC
Q 017159 278 GIQLLLVRAVNAVIIGSD 295 (376)
Q Consensus 278 ~i~~L~~~gaDaVILGCT 295 (376)
++..+.++++|.+||-+.
T Consensus 134 a~~~f~~~~~d~~VlEvG 151 (437)
T 3nrs_A 134 ALQLFKQAKLDVVILEVG 151 (437)
T ss_dssp HHHHHHHTCCSEEEEECS
T ss_pred HHHHHHhCCCCEEEEEcC
Confidence 445566789999999664
No 367
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=22.70 E-value=84 Score=32.11 Aligned_cols=86 Identities=13% Similarity=0.056 Sum_probs=49.6
Q ss_pred HHHHHHHcCCcEEE-EeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHH
Q 017159 158 KRAFLEQAGARCIV-MPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEK 236 (376)
Q Consensus 158 ~~~~L~~~Gad~IV-IaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~ 236 (376)
.++.|++.|++.|+ +|-...-++++.+.+.-++.++....+-.....+.|+-. ..++-..+++|.++=....+...
T Consensus 37 lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr---~tgkpgv~~~TsGpG~~N~~~gi 113 (604)
T 2x7j_A 37 FIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAK---AKQRPVLLICTSGTAAANFYPAV 113 (604)
T ss_dssp HHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHH---HHTSCEEEEECSSHHHHTTHHHH
T ss_pred HHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHH---hhCCCEEEEECChhHHHHHHHHH
Confidence 35678999999875 444444556899976556888877776554444444310 11223456888776444444433
Q ss_pred HHhc--CCceee
Q 017159 237 LQNQ--GFEVVL 246 (376)
Q Consensus 237 L~~~--G~evv~ 246 (376)
.+++ ++.+++
T Consensus 114 a~A~~~~vPlv~ 125 (604)
T 2x7j_A 114 VEAHYSRVPIIV 125 (604)
T ss_dssp HHHHHHTCCEEE
T ss_pred HHHhhcCCCEEE
Confidence 3332 444443
No 368
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=22.66 E-value=1.2e+02 Score=30.66 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=51.9
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHH
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKL 237 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L 237 (376)
++.|++.|++.+ .+|....-++++.+.+.-++.++...++-.....+.|+-. ..+ ...+++|.++=....+....
T Consensus 10 ~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar---~tg-~~v~~~TsGpG~~N~~~gia 85 (568)
T 2wvg_A 10 AERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYAR---AKG-AAAAVVTYSVGALSAFDAIG 85 (568)
T ss_dssp HHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHH---HHS-CEEEEECTTTTHHHHHHHHH
T ss_pred HHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHH---hhC-CeEEEEeCCCCHHHHHHHHH
Confidence 466888999976 6677666677999987556778877776655544444410 112 45678888875444444443
Q ss_pred Hhc--CCceee
Q 017159 238 QNQ--GFEVVL 246 (376)
Q Consensus 238 ~~~--G~evv~ 246 (376)
+++ ++.+++
T Consensus 86 ~A~~~~vPll~ 96 (568)
T 2wvg_A 86 GAYAENLPVIL 96 (568)
T ss_dssp HHHHTTCCEEE
T ss_pred HHhhhCCCEEE
Confidence 332 454443
No 369
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=22.50 E-value=3.6e+02 Score=23.68 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=50.4
Q ss_pred eEEEEc-CCChHHHHHHHHHHHHHhhhCCCC-CCCeEeecCCcch--hHHhhhchhhhccccccCcchHHHHHHHHHHHH
Q 017159 84 TIGIIG-GVSVSSTLNFLGKLVWYSAKDAEE-CPPFVVCNDPALN--EELFHASVHSLKSKTVQLDHIRGAVSQNLRHKR 159 (376)
Q Consensus 84 ~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq~-~~p~il~s~p~ip--d~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~~ 159 (376)
+|+|++ |-|. .++.|.+....+... .+-.|+.+.|+-. .+-..++.|...-...... ++++.- .+..
T Consensus 2 ri~vl~Sg~gs-----nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~~~~~-~r~~~~---~~~~ 72 (212)
T 1jkx_A 2 NIVVLISGNGS-----NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFD-SREAYD---RELI 72 (212)
T ss_dssp EEEEEESSCCH-----HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCS-SHHHHH---HHHH
T ss_pred EEEEEEECCcH-----HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCccccc-chhhcc---HHHH
Confidence 688887 7774 377777776654432 3444554544432 2222233333211100111 112221 2234
Q ss_pred HHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 160 AFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 160 ~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
+.|++.++|+||++... +..=+.+-+.....++|+
T Consensus 73 ~~l~~~~~Dliv~agy~-~il~~~~l~~~~~~~iNi 107 (212)
T 1jkx_A 73 HEIDMYAPDVVVLAGFM-RILSPAFVSHYAGRLLNI 107 (212)
T ss_dssp HHHGGGCCSEEEESSCC-SCCCHHHHHHTTTSEEEE
T ss_pred HHHHhcCCCEEEEeChh-hhCCHHHHhhccCCEEEE
Confidence 56788999999998763 443333334444445544
No 370
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=22.50 E-value=99 Score=31.44 Aligned_cols=85 Identities=13% Similarity=-0.010 Sum_probs=50.0
Q ss_pred HHHHHHcCCcEEE-EeCCCchhhHHHHhcc-CCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHH
Q 017159 159 RAFLEQAGARCIV-MPCHISHAWHGDVSEG-CSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEK 236 (376)
Q Consensus 159 ~~~L~~~Gad~IV-IaCNTAH~~~d~L~~~-~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~ 236 (376)
++.|++.|++.|+ +|-...-++++.+.+. -++.++...++-.....+.|+-. ..++-..+++|.++=....+...
T Consensus 11 ~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr---~tg~p~v~~~TsGpG~~N~~~gv 87 (589)
T 2pgn_A 11 VEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNY---VKDRSAAVGAWHCVGNLLLHAAM 87 (589)
T ss_dssp HHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHH---HHTSCCEEEEEEGGGGGGCHHHH
T ss_pred HHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHH---HHCCCEEEEEecCchHHHHHHHH
Confidence 4678899999774 4444445568999765 45777777666544444444310 11223557888887555555555
Q ss_pred HHhc--CCceee
Q 017159 237 LQNQ--GFEVVL 246 (376)
Q Consensus 237 L~~~--G~evv~ 246 (376)
.+++ ++.+++
T Consensus 88 ~~A~~~~vPll~ 99 (589)
T 2pgn_A 88 QEARTGRIPAVH 99 (589)
T ss_dssp HHHHHTTCCEEE
T ss_pred HHHHhcCCCEEE
Confidence 4443 444443
No 371
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=22.48 E-value=1e+02 Score=29.42 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
+.+.++.++++|+|+|.+-+-|
T Consensus 146 ~~~~a~~l~~aG~d~I~V~~r~ 167 (350)
T 3b0p_A 146 LAQSVEAMAEAGVKVFVVHARS 167 (350)
T ss_dssp HHHHHHHHHHTTCCEEEEECSC
T ss_pred HHHHHHHHHHcCCCEEEEecCc
Confidence 4455678899999999998765
No 372
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=22.42 E-value=2.1e+02 Score=25.55 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=69.6
Q ss_pred HHHHHHHcCCcEEEEeCCCch--------hhHHHHhccCCCCee-----ccHHHHHHHHHHhcCCCCcCCCCceEEEeec
Q 017159 158 KRAFLEQAGARCIVMPCHISH--------AWHGDVSEGCSIPFL-----HVGECVAKELKEAKLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTAH--------~~~d~L~~~~~vPvl-----~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT 224 (376)
.++.+.+.|+|-+.+-=-++. .+.+++.+.+.+|+- .-. +.++.+...|.. ||. ++|
T Consensus 36 ~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i~~~~~~pl~vGGGIrs~-e~~~~~l~~Gad--------kVi-i~t 105 (243)
T 4gj1_A 36 KFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSK-EEVKALLDCGVK--------RVV-IGS 105 (243)
T ss_dssp HHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHHHHHCCSEEEEESSCCCH-HHHHHHHHTTCS--------EEE-ECT
T ss_pred HHHHHHHCCCCEEEEEecCcccccchhHHHHHHHHHHhcCCCeEeccccccH-HHHHHHHHcCCC--------EEE-Ecc
Confidence 345678889998876533322 236677777888862 223 345556667764 774 899
Q ss_pred chhhchHHHHHHHHhcCCceeecCcccc---ccchHHHHHHHhcCChHHHHHHHHHHHHHHhhCCCCEEEEC
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKATM---EHVIIPTIEALNHRDMEGARNLLRIGIQLLLVRAVNAVIIG 293 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~~q---~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~~gaDaVILG 293 (376)
.+--...+..+..+.+|-+.++..-+.. +..+. ++ |-.+.+...+.+.++.+.+.|+.-+|+-
T Consensus 106 ~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~--~~----gw~~~~~~~~~~~~~~~~~~g~~eil~t 171 (243)
T 4gj1_A 106 MAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVA--VN----AWQEASDKKLMEVLDFYSNKGLKHILCT 171 (243)
T ss_dssp TTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------------CCBHHHHHHHHHTTTCCEEEEE
T ss_pred ccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEE--ec----CceecccchHHHHHHHHhhcCCcEEEee
Confidence 8877778888888888877655443321 11110 11 1111122224555666777788877764
No 373
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=22.29 E-value=4.8e+02 Score=24.35 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCch
Q 017159 153 QNLRHKRAFLEQAGARCIVMPCHISH 178 (376)
Q Consensus 153 ~~l~~~~~~L~~~Gad~IVIaCNTAH 178 (376)
+.+.+.++.+.++|||.||+-|-|..
T Consensus 111 ~~M~~dI~~~~~~GAdGvVfG~L~~d 136 (287)
T 3iwp_A 111 EVMKADIRLAKLYGADGLVFGALTED 136 (287)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCBCTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeCCC
Confidence 44677788899999999999996654
No 374
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.29 E-value=2.5e+02 Score=24.74 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=34.6
Q ss_pred CCceEEEeecc---hhhchHHHHHH-------HHhcCCceeecCccccccchHHHHHHHhcCChHHHHHHHHHHHHHHhh
Q 017159 215 SGVRIGVLATD---ATLSAGFYQEK-------LQNQGFEVVLPDKATMEHVIIPTIEALNHRDMEGARNLLRIGIQLLLV 284 (376)
Q Consensus 215 ~~~rVGlLaT~---~T~~s~~Y~~~-------L~~~G~evv~p~~~~q~~~l~~~ie~lk~G~~~~a~~~l~~~i~~L~~ 284 (376)
..++|||+-.. ..+...+|... ++++|+.+++-.... ..+...++++.+..
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-------------------~~~~~~~~~~~l~~ 66 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNN-------------------MNDLMDEVYKMIKQ 66 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCS-------------------HHHHHHHHHHHHHT
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCC-------------------ChHHHHHHHHHHHh
Confidence 34689998743 23455555543 455677766543211 01112334455667
Q ss_pred CCCCEEEECCCc
Q 017159 285 RAVNAVIIGSDE 296 (376)
Q Consensus 285 ~gaDaVILGCTE 296 (376)
+++|+||+..++
T Consensus 67 ~~vdGiI~~~~~ 78 (295)
T 3hcw_A 67 RMVDAFILLYSK 78 (295)
T ss_dssp TCCSEEEESCCC
T ss_pred CCcCEEEEcCcc
Confidence 788888886544
No 375
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=22.18 E-value=2.1e+02 Score=26.38 Aligned_cols=86 Identities=8% Similarity=0.043 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.+++|.+.|+|.|++++.|.-.+ ++...+.. .+||+ |+ .+.+ ++++.+.|..
T Consensus 26 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad----- 100 (294)
T 3b4u_A 26 MIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGAR----- 100 (294)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCS-----
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCC-----
Confidence 45556788899999999998876543 22233333 47875 22 2333 3344445543
Q ss_pred CCceEEEeecchhhc----h---HHHHHHHHhc---CCceeecCc
Q 017159 215 SGVRIGVLATDATLS----A---GFYQEKLQNQ---GFEVVLPDK 249 (376)
Q Consensus 215 ~~~rVGlLaT~~T~~----s---~~Y~~~L~~~---G~evv~p~~ 249 (376)
-.++.+++-.+ . .+|+...++. ++.+++-+.
T Consensus 101 ----avlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~ 141 (294)
T 3b4u_A 101 ----NILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNI 141 (294)
T ss_dssp ----EEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred ----EEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 23344554333 2 2455656656 787776553
No 376
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=22.05 E-value=96 Score=30.90 Aligned_cols=22 Identities=5% Similarity=0.074 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
+.+.++.++++|+|.|++-.-|
T Consensus 313 ~~~iA~~~~~aGaDgI~v~ntt 334 (443)
T 1tv5_A 313 KKEIADVLLETNIDGMIISNTT 334 (443)
T ss_dssp HHHHHHHHHHTTCSEEEECCCB
T ss_pred HHHHHHHHHHcCCCEEEEECCC
Confidence 4556778899999988765433
No 377
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=22.00 E-value=1.1e+02 Score=31.03 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=48.8
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHH
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKL 237 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L 237 (376)
++.|++.|++.+ .+|....-++++.+.+ .++.++....+-.....+.|+-. ..++-..+++|.++=....+....
T Consensus 18 ~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~v~~~~E~~Aa~~A~Gyar---~tg~p~v~~~TsGpG~~N~~~~l~ 93 (566)
T 1ozh_A 18 VSQLEAQGVRQVFGIPGAKIDKVFDSLLD-SSIRIIPVRHEANAAFMAAAVGR---ITGKAGVALVTSGPGCSNLITGMA 93 (566)
T ss_dssp HHHHHHHTCCEEEEECCTTTHHHHHHGGG-SSSEEEECSSHHHHHHHHHHHHH---HHSSCEEEEECSTHHHHTTHHHHH
T ss_pred HHHHHHCCCCEEEEcCCCchHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHH---HHCCCEEEEEccChHHHHHHHHHH
Confidence 466888999976 6666666667999976 46888877776555444444310 112234567787764433333333
Q ss_pred Hhc--CCceee
Q 017159 238 QNQ--GFEVVL 246 (376)
Q Consensus 238 ~~~--G~evv~ 246 (376)
+++ ++.+++
T Consensus 94 ~A~~~~vPll~ 104 (566)
T 1ozh_A 94 TANSEGDPVVA 104 (566)
T ss_dssp HHHHHTCCEEE
T ss_pred HHHhcCCCEEE
Confidence 332 444443
No 378
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=21.88 E-value=52 Score=28.79 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=16.8
Q ss_pred ccccCCCcccccccCCeEEEEcCCChHHHH
Q 017159 68 SLLRSKSPDSLLNQANTIGIIGGVSVSSTL 97 (376)
Q Consensus 68 ~~~~~~~~~~~~~~~k~IGIIGGmGp~AT~ 97 (376)
+.......+.+...|.+||||| .|..++.
T Consensus 9 ~~~~~~~~~~~~m~mmkI~IIG-~G~mG~~ 37 (220)
T 4huj_A 9 SGVDLGTENLYFQSMTTYAIIG-AGAIGSA 37 (220)
T ss_dssp --------CTTGGGSCCEEEEE-CHHHHHH
T ss_pred ccccccccchhhhcCCEEEEEC-CCHHHHH
Confidence 3455566677776788999998 7887774
No 379
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}
Probab=21.84 E-value=3.8e+02 Score=25.94 Aligned_cols=82 Identities=17% Similarity=0.101 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHc-CCcEEEEeCCCchhh------HHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceE
Q 017159 147 IRGAVSQNLRHKRAFLEQA-GARCIVMPCHISHAW------HGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRI 219 (376)
Q Consensus 147 ~~~~i~~~l~~~~~~L~~~-Gad~IVIaCNTAH~~------~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rV 219 (376)
+|..-.+.+++.+...... |+ .|+..|.|-|.- ++++.+. -++-++.+...| .++
T Consensus 92 DW~~a~ELIrRs~aeA~~~pg~-~ia~G~GTDqL~~~~~~~l~~V~~A--------Y~EQ~~~Ve~~G---------~~~ 153 (396)
T 4dnh_A 92 GWPEARELIRRSLAEARGRPDA-LIACGAGTDHLAPGPDVSIDDILAA--------YESQIEAIEAEG---------GRI 153 (396)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSC-CEEEEECCTTSCCCTTCCHHHHHHH--------HHHHHHHHHHTT---------CCE
T ss_pred CcHHHHHHHHHHHHHHhcCCCC-eeeeccCcCCCCCCCCCCHHHHHHH--------HHHHHHHHHHcC---------CeE
Confidence 4688888888777666555 54 488889998832 2222221 233444555554 378
Q ss_pred EEeecchhhc--------hHHHHHHHHhcCCceee
Q 017159 220 GVLATDATLS--------AGFYQEKLQNQGFEVVL 246 (376)
Q Consensus 220 GlLaT~~T~~--------s~~Y~~~L~~~G~evv~ 246 (376)
-++|+++-.+ ..+|.+.|.+..-.|++
T Consensus 154 ILMASRaLA~~A~~pdDY~~VY~~vL~q~~~PVIL 188 (396)
T 4dnh_A 154 ILMASRALAAAAKGPEDYIRVYDRVLSQVKEPVII 188 (396)
T ss_dssp EECCCHHHHHHCCSHHHHHHHHHHHHHHCSSCEEE
T ss_pred EEehhHHHHHHhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999976433 35688999887766664
No 380
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=21.82 E-value=1.1e+02 Score=30.78 Aligned_cols=84 Identities=8% Similarity=-0.112 Sum_probs=49.0
Q ss_pred HHHHHHcCCcEEE-EeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHH
Q 017159 159 RAFLEQAGARCIV-MPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKL 237 (376)
Q Consensus 159 ~~~L~~~Gad~IV-IaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L 237 (376)
++.|++.|++.|+ +|-...-.+++.+.+. ++.++...++-.....+.|+-. ..++-..+++|.++=....+....
T Consensus 17 ~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~GyAr---~tg~pgv~~~TsGpG~~N~~~~i~ 92 (568)
T 2c31_A 17 IDALKMNDIDTMYGVVGIPITNLARMWQDD-GQRFYSFRHEQHAGYAASIAGY---IEGKPGVCLTVSAPGFLNGVTSLA 92 (568)
T ss_dssp HHHHHHTTCCEEEECCCTTTHHHHHHHHHT-TCEEEECSSHHHHHHHHHHHHH---HHSSCEEEEECSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCCccHHHHHHHHhC-CCcEEEeCcHHHHHHHHHHHHH---HhCCCEEEEEcCCccHHHHHHHHH
Confidence 4678899999775 4444444568888653 6888877776655444443310 112235678888875555554444
Q ss_pred Hhc--CCceee
Q 017159 238 QNQ--GFEVVL 246 (376)
Q Consensus 238 ~~~--G~evv~ 246 (376)
+++ ++.+++
T Consensus 93 ~A~~~~vPll~ 103 (568)
T 2c31_A 93 HATTNCFPMIL 103 (568)
T ss_dssp HHHHHTCCEEE
T ss_pred HHHhcCCCEEE
Confidence 333 454443
No 381
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=21.75 E-value=1.8e+02 Score=26.73 Aligned_cols=26 Identities=4% Similarity=0.038 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~ 180 (376)
+.+.++++.+.|+|.|++++.|.-.+
T Consensus 21 l~~lv~~li~~Gv~gl~v~GttGE~~ 46 (286)
T 2r91_A 21 FANHVKNITSKGVDVVFVAGTTGLGP 46 (286)
T ss_dssp HHHHHHHHHHTTCCEEEETSTTTTGG
T ss_pred HHHHHHHHHHCCCCEEEECccccChh
Confidence 45556788899999999998876543
No 382
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=21.60 E-value=2.2e+02 Score=28.48 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCcEEEEe----CCCchhh---HHHHhccCCCCe-------eccHHHHHHHHHHhcCC
Q 017159 154 NLRHKRAFLEQAGARCIVMP----CHISHAW---HGDVSEGCSIPF-------LHVGECVAKELKEAKLK 209 (376)
Q Consensus 154 ~l~~~~~~L~~~Gad~IVIa----CNTAH~~---~d~L~~~~~vPv-------l~Iveat~~~~~~~g~k 209 (376)
++.+.++.+.++|||.|.|+ .-+.+.+ +..+++.+++|+ .++.-+...++.+.|.+
T Consensus 159 ~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN~laAv~AGa~ 228 (464)
T 2nx9_A 159 TWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVDVELHLHCHSTAGLADMTLLKAIEAGVD 228 (464)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 45666677889999999997 3333333 566777778875 55666666666677764
No 383
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=21.58 E-value=2.5e+02 Score=25.44 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=24.9
Q ss_pred ceEEEeecchhhchHHHHHHHHhcCCceeecCcc
Q 017159 217 VRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 217 ~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
++|||+|. |+|-.. +...|.+.|++|++.+..
T Consensus 16 ~~I~VIG~-G~mG~~-iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 16 KHVTVIGG-GLMGAG-IAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CEEEEECC-SHHHHH-HHHHHHHTTCEEEEECSC
T ss_pred CEEEEECC-CHHHHH-HHHHHHhCCCeEEEEECC
Confidence 58999999 888776 455667789999987754
No 384
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=21.44 E-value=3.2e+02 Score=27.64 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCcEEEEeCCCc-------h-hhHHHHhccCCCCeecc-----HHHHHHHHHHhcCCCCcCCCCceEEEee
Q 017159 157 HKRAFLEQAGARCIVMPCHIS-------H-AWHGDVSEGCSIPFLHV-----GECVAKELKEAKLKPLEAGSGVRIGVLA 223 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTA-------H-~~~d~L~~~~~vPvl~I-----veat~~~~~~~g~k~~~~~~~~rVGlLa 223 (376)
+.++.+++.||+.|++-+-+. . ..+.++.+.+++|||-- .+-..+.....|. .-.++|
T Consensus 456 e~a~~~~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~---------~gvivg 526 (555)
T 1jvn_A 456 ELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRA---------DACLGA 526 (555)
T ss_dssp HHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCC---------SEEEES
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCC---------hHHHHH
Confidence 456778999999998755321 1 13678888889999852 2333332222343 123445
Q ss_pred cchh---hchHHHHHHHHhcCCceeec
Q 017159 224 TDAT---LSAGFYQEKLQNQGFEVVLP 247 (376)
Q Consensus 224 T~~T---~~s~~Y~~~L~~~G~evv~p 247 (376)
+... +.-.-..+.+.+.|+.+..+
T Consensus 527 ~a~~~~~~~~~e~~~~l~~~gi~~r~~ 553 (555)
T 1jvn_A 527 GMFHRGEFTVNDVKEYLLEHGLKVRMD 553 (555)
T ss_dssp HHHHTTSCCHHHHHHHHHHTTCCCCCC
T ss_pred HHHHcCCCCHHHHHHHHHHCCCccccC
Confidence 4322 22222445567778876653
No 385
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=21.43 E-value=97 Score=29.55 Aligned_cols=88 Identities=13% Similarity=0.141 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeeccHH-------HHHH--HHHHh-cCCCCcCCCCceEEEeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHVGE-------CVAK--ELKEA-KLKPLEAGSGVRIGVLAT 224 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~Ive-------at~~--~~~~~-g~k~~~~~~~~rVGlLaT 224 (376)
+.+.++-|.+. +|+|||=.. .|-.++++.+..++||||... +.+. .+++. |. -.+.+|+++|-
T Consensus 91 l~DTarvls~~-~D~iviR~~-~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-----l~gl~va~vGD 163 (321)
T 1oth_A 91 LTDTARVLSSM-ADAVLARVY-KQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSS-----LKGLTLSWIGD 163 (321)
T ss_dssp HHHHHHHHHHH-CSEEEEECS-CHHHHHHHHHHCSSCEEESCCSSCCHHHHHHHHHHHHHHHSC-----CTTCEEEEESC
T ss_pred HHHHHHHHHHh-CCEEEEeCC-ChhHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHHHhCC-----cCCcEEEEECC
Confidence 45556778888 899999887 477888999889999999643 1111 12222 21 13568999987
Q ss_pred chhhchHHHHHHHHhcCCceeecCcc
Q 017159 225 DATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 225 ~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
-.-+ .+-+-..+...|.++.+..++
T Consensus 164 ~~~v-a~Sl~~~~~~~G~~v~~~~P~ 188 (321)
T 1oth_A 164 GNNI-LHSIMMSAAKFGMHLQAATPK 188 (321)
T ss_dssp SSHH-HHHHHTTTGGGTCEEEEECCT
T ss_pred chhh-HHHHHHHHHHcCCeEEEECCc
Confidence 3211 222344456678888776554
No 386
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=21.37 E-value=1.7e+02 Score=28.21 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCcEEEEeCCCchh-----hHHHHhccC-CCCeec
Q 017159 156 RHKRAFLEQAGARCIVMPCHISHA-----WHGDVSEGC-SIPFLH 194 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH~-----~~d~L~~~~-~vPvl~ 194 (376)
.+.++.+.++|+|+|++-++.-|. .++.+++.+ ++||+.
T Consensus 102 ~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~ 146 (361)
T 3r2g_A 102 LQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMA 146 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEE
Confidence 344567888999999986543322 245555554 556553
No 387
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=21.32 E-value=1e+02 Score=29.81 Aligned_cols=22 Identities=5% Similarity=0.140 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI 176 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT 176 (376)
+.+.++.++++|||.|++-..|
T Consensus 236 ~~~ia~~~~~aGadgi~v~ntt 257 (367)
T 3zwt_A 236 KEDIASVVKELGIDGLIVTNTT 257 (367)
T ss_dssp HHHHHHHHHHHTCCEEEECCCB
T ss_pred HHHHHHHHHHcCCCEEEEeCCC
Confidence 4556677899999998765333
No 388
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=21.14 E-value=2.2e+02 Score=26.25 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchh
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHA 179 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~ 179 (376)
+.+.++++.+.|+|.|++++.|.-.
T Consensus 24 l~~lv~~li~~Gv~gl~~~GttGE~ 48 (292)
T 2ojp_A 24 LKKLIDYHVASGTSAIVSVGTTGES 48 (292)
T ss_dssp HHHHHHHHHHHTCCEEEESSTTTTG
T ss_pred HHHHHHHHHHcCCCEEEECccccch
Confidence 4555678888999999999887654
No 389
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=21.10 E-value=1e+02 Score=28.54 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCcEEEEeCCCchh---------hHHHHhccCCCCee
Q 017159 157 HKRAFLEQAGARCIVMPCHISHA---------WHGDVSEGCSIPFL 193 (376)
Q Consensus 157 ~~~~~L~~~Gad~IVIaCNTAH~---------~~d~L~~~~~vPvl 193 (376)
+.++..++.|||++++..--... +|.++.+.+++||+
T Consensus 82 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPii 127 (288)
T 2nuw_A 82 ELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLY 127 (288)
T ss_dssp HHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 34456788999998775432211 36788888888864
No 390
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=21.10 E-value=3.5e+02 Score=23.95 Aligned_cols=104 Identities=11% Similarity=0.059 Sum_probs=52.1
Q ss_pred CCeEEEEc-CCChHHHHHHHHHHHHHhhhCCCCCCCeEeecCCcchh--HHhhhchhhhccccccCcchHHHHHHHHHHH
Q 017159 82 ANTIGIIG-GVSVSSTLNFLGKLVWYSAKDAEECPPFVVCNDPALNE--ELFHASVHSLKSKTVQLDHIRGAVSQNLRHK 158 (376)
Q Consensus 82 ~k~IGIIG-GmGp~AT~~f~~kI~~~~~~~dq~~~p~il~s~p~ipd--~l~~~s~~~~~~~~~~~~~~~~~i~~~l~~~ 158 (376)
.++|+|+. |-|.- ++.|.+...++-...+..|+.+.|+... +-..++.|.+.-.....+. +++.- .+.
T Consensus 5 ~~riavl~SG~Gsn-----l~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~~~~~~-r~~~d---~~~ 75 (215)
T 3tqr_A 5 PLPIVVLISGNGTN-----LQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQADIPTHIIPHEEFPS-RTDFE---STL 75 (215)
T ss_dssp CEEEEEEESSCCHH-----HHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHTTCCEEECCGGGSSS-HHHHH---HHH
T ss_pred CcEEEEEEeCCcHH-----HHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCccccCc-hhHhH---HHH
Confidence 34688874 67765 6666666654411235555666665432 2222233332111011111 12211 233
Q ss_pred HHHHHHcCCcEEEEeCCCchhhHHHHhccCCCCeecc
Q 017159 159 RAFLEQAGARCIVMPCHISHAWHGDVSEGCSIPFLHV 195 (376)
Q Consensus 159 ~~~L~~~Gad~IVIaCNTAH~~~d~L~~~~~vPvl~I 195 (376)
.+.|++.++|+||++... +..-+++-+.....+||+
T Consensus 76 ~~~l~~~~~Dliv~agy~-~il~~~~l~~~~~~~iNi 111 (215)
T 3tqr_A 76 QKTIDHYDPKLIVLAGFM-RKLGKAFVSHYSGRMINI 111 (215)
T ss_dssp HHHHHTTCCSEEEESSCC-SCCCHHHHHHTTTSEEEE
T ss_pred HHHHHhcCCCEEEEccch-hhCCHHHHhhccCCeEEe
Confidence 466888999999998864 444344444444445554
No 391
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=20.96 E-value=1.1e+02 Score=30.98 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=52.4
Q ss_pred HHHHHHcCCcEE-EEeCCCchhhHHHHhccCCCCeeccHHHHHHHHHHhcCCCCcCCCCceEEEeecchhhchHHHHHHH
Q 017159 159 RAFLEQAGARCI-VMPCHISHAWHGDVSEGCSIPFLHVGECVAKELKEAKLKPLEAGSGVRIGVLATDATLSAGFYQEKL 237 (376)
Q Consensus 159 ~~~L~~~Gad~I-VIaCNTAH~~~d~L~~~~~vPvl~Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~s~~Y~~~L 237 (376)
++.|++.|++.+ .+|....-++++.+.+.-++.++....+-.....+.|+-. ..+ ...++.|.++-....+....
T Consensus 32 ~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr---~tG-~~v~~~tsGpG~~N~~~gi~ 107 (570)
T 2vbf_A 32 LDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYAR---TKK-AAAFLTTFGVGELSAINGLA 107 (570)
T ss_dssp HHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHH---HHS-CEEEEEETTHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHH---HhC-CeEEEEcCCCCHHHHHHHHH
Confidence 467888999976 6666666677999987556777777766555444444310 112 45678888876555555444
Q ss_pred Hhc--CCceeec
Q 017159 238 QNQ--GFEVVLP 247 (376)
Q Consensus 238 ~~~--G~evv~p 247 (376)
+++ ++.+++-
T Consensus 108 ~A~~~~vPlv~i 119 (570)
T 2vbf_A 108 GSYAENLPVVEI 119 (570)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHhhhCCCEEEE
Confidence 332 4544443
No 392
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=20.93 E-value=64 Score=28.52 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=13.2
Q ss_pred HHHHHHhcCCceeecCccccc
Q 017159 233 YQEKLQNQGFEVVLPDKATME 253 (376)
Q Consensus 233 Y~~~L~~~G~evv~p~~~~q~ 253 (376)
-.+.++++|+.+.+++....+
T Consensus 195 Ta~~l~~~G~~v~va~~~~~e 215 (229)
T 3p9z_A 195 TALYLQEQGIPSYIAKKPSLE 215 (229)
T ss_dssp HHHHHHHTTCCEEECSSSSHH
T ss_pred HHHHHHHcCCCceeCCCCCHH
Confidence 355677778887776655433
No 393
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=20.84 E-value=2.7e+02 Score=25.08 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=25.2
Q ss_pred ceEEEeecchhhchHHHHHHHHhcCCceeecCcc
Q 017159 217 VRIGVLATDATLSAGFYQEKLQNQGFEVVLPDKA 250 (376)
Q Consensus 217 ~rVGlLaT~~T~~s~~Y~~~L~~~G~evv~p~~~ 250 (376)
++|||+|. ++|-.+ +-..+...|++|++.+..
T Consensus 5 ~kV~VIGa-G~mG~~-iA~~la~~G~~V~l~d~~ 36 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQ-IAFQTAFHGFAVTAYDIN 36 (283)
T ss_dssp CEEEEECC-SHHHHH-HHHHHHHTTCEEEEECSS
T ss_pred CEEEEECC-CHHHHH-HHHHHHhCCCeEEEEeCC
Confidence 48999998 788776 456677889999987653
No 394
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=20.79 E-value=4.2e+02 Score=23.06 Aligned_cols=51 Identities=4% Similarity=-0.195 Sum_probs=26.1
Q ss_pred HHHHHHhhCCC--CEEEECCCccccccCCCC-CCCCe--eeehHHHHHHHHHHHHHh
Q 017159 277 IGIQLLLVRAV--NAVIIGSDEMQGVLPKDD-PLLKK--CIDPMDALARSTVTWARS 328 (376)
Q Consensus 277 ~~i~~L~~~ga--DaVILGCTElpll~~~~~-~~~vp--vIDp~~~lA~a~v~~a~~ 328 (376)
.+++.+.+.|. |..|.|+...+....... +. +. +--+...+++.+++.+..
T Consensus 203 g~~~al~~~g~~~dv~vig~d~~~~~~~~~~~~~-lt~tv~~~~~~~g~~a~~~l~~ 258 (303)
T 3d02_A 203 GAGRAVKEKRAKNKVAVYGMMIPSQAASLIKSGD-ITEGITYDPATAGYALAAVAST 258 (303)
T ss_dssp HHHHHHHHTTCTTTCEEEECCCHHHHHHHHHHTS-SCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHH
Confidence 34455656665 788889887662211111 11 22 222345566666665544
No 395
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=20.74 E-value=2.1e+02 Score=26.31 Aligned_cols=85 Identities=7% Similarity=0.035 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCchhh----------HHHHhccC--CCCee-cc----HHHH---HHHHHHhcCCCCcCC
Q 017159 155 LRHKRAFLEQAGARCIVMPCHISHAW----------HGDVSEGC--SIPFL-HV----GECV---AKELKEAKLKPLEAG 214 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNTAH~~----------~d~L~~~~--~vPvl-~I----veat---~~~~~~~g~k~~~~~ 214 (376)
+.+.++++.+.|+|.|++++.|.-.. ++.+.+.. .+||+ |+ .+.+ ++++.+.|..
T Consensus 23 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad----- 97 (292)
T 2vc6_A 23 LHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGAD----- 97 (292)
T ss_dssp HHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS-----
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCC-----
Confidence 45556788889999999988776443 12222222 47875 22 2333 3344445542
Q ss_pred CCceEEEeecchhh---chH---HHHHHHHhcCCceeecC
Q 017159 215 SGVRIGVLATDATL---SAG---FYQEKLQNQGFEVVLPD 248 (376)
Q Consensus 215 ~~~rVGlLaT~~T~---~s~---~Y~~~L~~~G~evv~p~ 248 (376)
-.++.+++-. +.+ +|+...++-++.+++-+
T Consensus 98 ----avlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (292)
T 2vc6_A 98 ----GVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYN 133 (292)
T ss_dssp ----EEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred ----EEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 2344444321 123 35566666678777654
No 396
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=20.67 E-value=2.4e+02 Score=25.88 Aligned_cols=26 Identities=8% Similarity=-0.011 Sum_probs=20.1
Q ss_pred HHHHHHHHHH-cCCcEEEEeCCCchhh
Q 017159 155 LRHKRAFLEQ-AGARCIVMPCHISHAW 180 (376)
Q Consensus 155 l~~~~~~L~~-~Gad~IVIaCNTAH~~ 180 (376)
+.+.++++.+ .|+|.|++++.|.-.+
T Consensus 26 l~~lv~~li~~~Gv~gl~~~GttGE~~ 52 (293)
T 1f6k_A 26 LRQIIRHNIDKMKVDGLYVGGSTGENF 52 (293)
T ss_dssp HHHHHHHHHHTSCCSEEEESSGGGTGG
T ss_pred HHHHHHHHHhhCCCcEEEeCccccchh
Confidence 4555678888 9999999998876543
No 397
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=20.64 E-value=4e+02 Score=23.18 Aligned_cols=51 Identities=18% Similarity=0.044 Sum_probs=30.3
Q ss_pred HHHHHHHcCCcEEEEeCCCc--h------hhHHHHhccCCCCeeccH----HHHHHHHHHhcC
Q 017159 158 KRAFLEQAGARCIVMPCHIS--H------AWHGDVSEGCSIPFLHVG----ECVAKELKEAKL 208 (376)
Q Consensus 158 ~~~~L~~~Gad~IVIaCNTA--H------~~~d~L~~~~~vPvl~Iv----eat~~~~~~~g~ 208 (376)
.++.+++.|++.|++...+. + ..+.++++.+++|++-.. ..-++.+.+.|.
T Consensus 157 ~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Ga 219 (252)
T 1ka9_F 157 WAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGA 219 (252)
T ss_dssp HHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 34557778999887753221 1 136777888889987542 133444555554
No 398
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=20.64 E-value=1.1e+02 Score=28.90 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCC-ch-------hhHHHHhccCCCCeec
Q 017159 155 LRHKRAFLEQAGARCIVMPCHI-SH-------AWHGDVSEGCSIPFLH 194 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIaCNT-AH-------~~~d~L~~~~~vPvl~ 194 (376)
+.+.++.+...|.|+|.|. .| .+ .+++.+++.+++|++=
T Consensus 55 ~~~~~~~~~~sGtDai~VG-S~~vt~~~~~~~~~v~~ik~~~~lPvil 101 (286)
T 3vk5_A 55 AVEKAAELTRLGFAAVLLA-STDYESFESHMEPYVAAVKAATPLPVVL 101 (286)
T ss_dssp HHHHHHHHHHTTCSCEEEE-CSCCSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHhcCCCEEEEc-cCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 3344556778999999999 44 33 2367778878899774
No 399
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=20.56 E-value=2.2e+02 Score=28.48 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEEEeCCCch-----hhHHHHhccC-CCCeec---cHHHHHHHHHHhcCCCCcCCCCceEEEeecch
Q 017159 156 RHKRAFLEQAGARCIVMPCHISH-----AWHGDVSEGC-SIPFLH---VGECVAKELKEAKLKPLEAGSGVRIGVLATDA 226 (376)
Q Consensus 156 ~~~~~~L~~~Gad~IVIaCNTAH-----~~~d~L~~~~-~vPvl~---Iveat~~~~~~~g~k~~~~~~~~rVGlLaT~~ 226 (376)
.+.++.|.++|+|+|+|-+...| -+++++++.+ ++|++- .-...++.+.+.|.+ -|-+=++++
T Consensus 233 ~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD--------~I~Vg~g~G 304 (496)
T 4fxs_A 233 EERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVS--------AVKVGIGPG 304 (496)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCS--------EEEECSSCC
T ss_pred HHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCC--------EEEECCCCC
Q ss_pred hh
Q 017159 227 TL 228 (376)
Q Consensus 227 T~ 228 (376)
..
T Consensus 305 s~ 306 (496)
T 4fxs_A 305 SI 306 (496)
T ss_dssp TT
T ss_pred cC
No 400
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=20.39 E-value=2.6e+02 Score=25.54 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 017159 155 LRHKRAFLEQAGARCIVMP 173 (376)
Q Consensus 155 l~~~~~~L~~~Gad~IVIa 173 (376)
+.+.++.+.+.|||.|.++
T Consensus 157 ~~~~~~~~~~~G~d~i~l~ 175 (295)
T 1ydn_A 157 VASVTEQLFSLGCHEVSLG 175 (295)
T ss_dssp HHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEec
Confidence 3444566778899988888
No 401
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=20.02 E-value=4.1e+02 Score=24.49 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=47.3
Q ss_pred HcCCcEEEEeCCCchhh------HHHHhccCCCCeec---cHHH-HHHHHHHhcCCCCcCCCCceEEEeecchhhc-hHH
Q 017159 164 QAGARCIVMPCHISHAW------HGDVSEGCSIPFLH---VGEC-VAKELKEAKLKPLEAGSGVRIGVLATDATLS-AGF 232 (376)
Q Consensus 164 ~~Gad~IVIaCNTAH~~------~d~L~~~~~vPvl~---Ivea-t~~~~~~~g~k~~~~~~~~rVGlLaT~~T~~-s~~ 232 (376)
++||.+|-+-|-. ++| +.++++.+++|++- |+++ -+.+++..|.. -|.|++.--+-+ -.-
T Consensus 74 ~~GA~aiSVLTd~-~~F~Gs~~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~~GAD--------aILLI~a~L~~~~l~~ 144 (258)
T 4a29_A 74 ERYAVGLSITTEE-KYFNGSYETLRKIASSVSIPILMSDFIVKESQIDDAYNLGAD--------TVLLIVKILTERELES 144 (258)
T ss_dssp TTTCSEEEEECCS-TTTCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHHHTCS--------EEEEEGGGSCHHHHHH
T ss_pred hCCCeEEEEeCCC-CCCCCCHHHHHHHHHhcCCCEeeccccccHHHHHHHHHcCCC--------eeehHHhhcCHHHHHH
Confidence 4799998777765 333 56677889999874 3444 36667777764 576666533221 123
Q ss_pred HHHHHHhcCCceee
Q 017159 233 YQEKLQNQGFEVVL 246 (376)
Q Consensus 233 Y~~~L~~~G~evv~ 246 (376)
+-+...+.|+++++
T Consensus 145 l~~~A~~lGl~~Lv 158 (258)
T 4a29_A 145 LLEYARSYGMEPLI 158 (258)
T ss_dssp HHHHHHHTTCCCEE
T ss_pred HHHHHHHHhHHHHH
Confidence 44555677998876
Done!