Query 017160
Match_columns 376
No_of_seqs 232 out of 2427
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 09:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.8 1.4E-20 4.7E-25 179.9 1.5 177 180-363 126-342 (367)
2 2lnd_A De novo designed protei 13.1 1.2E+02 0.0043 22.0 2.6 20 345-364 86-105 (112)
3 3ivz_A Nitrilase; alpha-beta s 10.7 2E+02 0.0069 25.0 3.8 28 245-274 19-46 (262)
4 3hkx_A Amidase; alpha-beta-BET 10.4 2.1E+02 0.007 25.5 3.8 27 246-274 39-65 (283)
5 3u5e_L 60S ribosomal protein L 9.6 1.2E+02 0.004 26.1 1.6 62 222-297 87-148 (199)
6 3p8k_A Hydrolase, carbon-nitro 8.9 2.1E+02 0.0071 25.4 3.2 27 246-274 39-65 (281)
7 1otf_A 4-oxalocrotonate tautom 7.5 2.9E+02 0.0098 17.7 2.7 22 345-366 14-35 (62)
8 1uf5_A N-carbamyl-D-amino acid 7.5 3.2E+02 0.011 24.2 3.8 27 246-274 24-50 (303)
9 2hjq_A Hypothetical protein YQ 6.9 1.1E+02 0.0038 23.2 0.3 10 2-11 59-68 (111)
10 2w1v_A Nitrilase-2, nitrilase 6.9 2.4E+02 0.0082 24.7 2.6 27 246-274 21-47 (276)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.78 E-value=1.4e-20 Score=179.88 Aligned_cols=177 Identities=17% Similarity=0.155 Sum_probs=115.1
Q ss_pred CCCCCCeEEEecCCchhhHHHhhhcc---------CceEEEccccccccHH---HHHHHhcCceEEecCCC------Ccc
Q 017160 180 EESGRPGAIISNHVSYLDILYHMSSS---------FPSFVAKRSVAKLPLV---GLISKCLGCVYVQRESK------SSD 241 (376)
Q Consensus 180 ~~~~~~~IiVsNH~S~lD~l~l~~~~---------~p~fvak~~l~~~P~~---g~~~~~~g~i~v~R~~~------~~~ 241 (376)
.+.++++|++|||+|.+|++++...+ ...||||+++.+.|+. +.+ +.++||+..|.-. .+.
T Consensus 126 l~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g-~~l~cI~~kk~id~~p~l~r~~ 204 (367)
T 1iuq_A 126 LQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIG-RNLICVYSKKHMFDIPELTETK 204 (367)
T ss_dssp HHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHT-SEEEECCCGGGTTSSGGGHHHH
T ss_pred ccCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhh-hheeeEEecccCCCcchhhhhh
Confidence 35678999999999999999888776 3599999999977766 444 4466888633211 000
Q ss_pred cccchHHHHHHHHHHHhCCCCCeEEEEeCceecCC----CC--ccccccccc----c----CCCc--EEEEEEECCCCCC
Q 017160 242 FKGVSGVVTERVREAHRDKSAPMMMLFPEGTTTNG----DY--LLPFKTGAF----L----ARAP--VLPVILRYPYQRF 305 (376)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~~~~~~lvIFPEGT~sn~----~~--ll~Fk~Gaf----~----~~~p--V~PV~I~y~~~~~ 305 (376)
.+... ...+.+.+.++.+ |..++|||||||+++ +. ..+||+|+| . +++| |+||+|. .+..+
T Consensus 205 ~r~n~-ksl~~~~~~Lk~G-G~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~-t~~im 281 (367)
T 1iuq_A 205 RKANT-RSLKEMALLLRGG-SQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL-CHDIM 281 (367)
T ss_dssp HHHHH-HHHHHHHHHHHHC-CCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE-CGGGS
T ss_pred hHHHH-HHHHHHHHHHHcC-CeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEE-ecccc
Confidence 11111 1223333344432 448999999999995 33 456999998 3 8999 9999999 66665
Q ss_pred CCcccccchhhHHHHHhhccCcEEEEEEcCccCCCCCC------CCCHHHHHHHHHHHHHHhcC
Q 017160 306 SPAWDSISGARHVFFLLCQFVNHIEVTSLPVYHPSQQE------KDDPKLYAENVRRLMASEVW 363 (376)
Q Consensus 306 s~~~~~~~~~~~~~~~l~~~~~~i~V~~lppi~p~~~~------~~~~~~~a~~vr~~ma~~l~ 363 (376)
.|.-..-. .+-......++.|.|+++|||++++.. +++.+.+++.+++.|++.++
T Consensus 282 ppp~~ve~---~~g~~r~i~~~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l~e~v~~~I~~~y~ 342 (367)
T 1iuq_A 282 PPPSQVEI---EIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYN 342 (367)
T ss_dssp CCC-------------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccc---cccccceeecccEEEEECCccchhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 54210000 000000123578999999999876532 22245688999999988774
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=13.13 E-value=1.2e+02 Score=22.03 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHHhcCC
Q 017160 345 DDPKLYAENVRRLMASEVWI 364 (376)
Q Consensus 345 ~~~~~~a~~vr~~ma~~l~l 364 (376)
.||+++.++||+-+..+..+
T Consensus 86 tdpeeltqrvreflktagsl 105 (112)
T 2lnd_A 86 TDPEELTQRVREFLKTAGSL 105 (112)
T ss_dssp CCHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHhcccc
Confidence 47999999999998887766
No 3
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=10.68 E-value=2e+02 Score=25.05 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHhCCCCCeEEEEeCceec
Q 017160 245 VSGVVTERVREAHRDKSAPMMMLFPEGTTT 274 (376)
Q Consensus 245 ~~~~~~~~l~~~~~~~~~~~lvIFPEGT~s 274 (376)
..+.+.+.++++.+++ .-|++|||-..+
T Consensus 19 N~~~~~~~i~~A~~~g--adlvvfPE~~~~ 46 (262)
T 3ivz_A 19 NYSKAEKLIKEASKQG--AQLVVLPELFDT 46 (262)
T ss_dssp HHHHHHHHHHHHHHTT--CSEEECCTTTTT
T ss_pred HHHHHHHHHHHHHHCC--CCEEEeCCCccc
Confidence 3445566666665554 369999997654
No 4
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=10.37 E-value=2.1e+02 Score=25.46 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHhCCCCCeEEEEeCceec
Q 017160 246 SGVVTERVREAHRDKSAPMMMLFPEGTTT 274 (376)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~lvIFPEGT~s 274 (376)
.+.+.+.++++.+++ .-|++|||-..+
T Consensus 39 ~~~~~~~i~~A~~~g--adlvvfPE~~l~ 65 (283)
T 3hkx_A 39 LDLIDDAAARASEQG--AQLLLTPELFGF 65 (283)
T ss_dssp HHHHHHHHHHHHHTT--CSEEECCTTGGG
T ss_pred HHHHHHHHHHHHHCC--CCEEEcCCCccc
Confidence 445556666666554 369999997765
No 5
>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L
Probab=9.65 E-value=1.2e+02 Score=26.12 Aligned_cols=62 Identities=15% Similarity=0.331 Sum_probs=33.1
Q ss_pred HHHHHhcCceEEecCCCCcccccchHHHHHHHHHHHhCCCCCeEEEEeCceecCCCCccccccccccCCCcEEEEE
Q 017160 222 GLISKCLGCVYVQRESKSSDFKGVSGVVTERVREAHRDKSAPMMMLFPEGTTTNGDYLLPFKTGAFLARAPVLPVI 297 (376)
Q Consensus 222 g~~~~~~g~i~v~R~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvIFPEGT~sn~~~ll~Fk~Gaf~~~~pV~PV~ 297 (376)
....+.+| |.||........++. +.-.++|+++.. -|++||-.. ...+.|+-...-+|+|+.
T Consensus 87 ~k~A~tiG-I~VD~RR~nks~Esl-~~NVqrLk~y~s-----klilFPrk~-------~~~kkGatq~~g~vmPi~ 148 (199)
T 3u5e_L 87 AAYARTIG-IAVDHRRQNRNQEIF-DANVQRLKEYQS-----KIIVFPRNG-------KAPEAEQVLSAAATFPIA 148 (199)
T ss_dssp HHHHHHTT-BCCCTTCCCCBHHHH-HHHHHHHHHHHH-----TEEECCSSS-------CCCCCCCCCCSTTTSCCC
T ss_pred HHHhcccC-eeeccccccccHHHH-HHHHHHHHHHHh-----heeEecccc-------cccccccccccccccccc
Confidence 44555555 677765443333332 233467777765 499999432 233555544444555543
No 6
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=8.87 E-value=2.1e+02 Score=25.41 Aligned_cols=27 Identities=11% Similarity=0.136 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhCCCCCeEEEEeCceec
Q 017160 246 SGVVTERVREAHRDKSAPMMMLFPEGTTT 274 (376)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~lvIFPEGT~s 274 (376)
.+.+.+.++++.+. +.-|++|||-..+
T Consensus 39 l~~~~~~i~~A~~~--gadlvvfPE~~l~ 65 (281)
T 3p8k_A 39 ETQITQWFEKNMNA--EVDVVVLPEMWNN 65 (281)
T ss_dssp HHHHHHHHHHHCCT--TCCEEECCSSTTT
T ss_pred HHHHHHHHHHHHhC--CCcEEEcCCCccC
Confidence 34455556555443 4479999997665
No 7
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=7.46 E-value=2.9e+02 Score=17.72 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCC
Q 017160 345 DDPKLYAENVRRLMASEVWISS 366 (376)
Q Consensus 345 ~~~~~~a~~vr~~ma~~l~l~~ 366 (376)
+..+.+++.+.+.+.+.+|++.
T Consensus 14 e~k~~l~~~i~~~l~~~lg~p~ 35 (62)
T 1otf_A 14 EQKETLIRQVSEAMANSLDAPL 35 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHhCcCc
Confidence 4567899999999999999964
No 8
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=7.45 E-value=3.2e+02 Score=24.17 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhCCCCCeEEEEeCceec
Q 017160 246 SGVVTERVREAHRDKSAPMMMLFPEGTTT 274 (376)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~lvIFPEGT~s 274 (376)
.+.+.+.++++.+++ .-|++|||...+
T Consensus 24 ~~~~~~~i~~a~~~g--adlvv~PE~~~~ 50 (303)
T 1uf5_A 24 VVRLLDMLTKAASRG--ANFIVFPELALT 50 (303)
T ss_dssp HHHHHHHHHHHHHTT--CSEEECCTTTTS
T ss_pred HHHHHHHHHHHHhcC--CCEEEecccccc
Confidence 445556666665544 369999997654
No 9
>2hjq_A Hypothetical protein YQBF; two-domain, structure, BSU26130, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.140.3.2 d.344.1.1
Probab=6.91 E-value=1.1e+02 Score=23.21 Aligned_cols=10 Identities=60% Similarity=0.767 Sum_probs=6.6
Q ss_pred hhhhccCCcc
Q 017160 2 ESELKDLNSK 11 (376)
Q Consensus 2 ~~~~~~~~~~ 11 (376)
|||||+||..
T Consensus 59 Es~LK~m~Ka 68 (111)
T 2hjq_A 59 ESELKGMNKA 68 (111)
T ss_dssp HHHHHTCCHH
T ss_pred HHHHhhhhhh
Confidence 6777777654
No 10
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=6.89 E-value=2.4e+02 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHhCCCCCeEEEEeCceec
Q 017160 246 SGVVTERVREAHRDKSAPMMMLFPEGTTT 274 (376)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~lvIFPEGT~s 274 (376)
.+.+.+.++++.+.+ .-|++|||...+
T Consensus 21 ~~~~~~~i~~a~~~g--adlvv~PE~~~~ 47 (276)
T 2w1v_A 21 LTRACSLVREAAKQG--ANIVSLPECFNS 47 (276)
T ss_dssp HHHHHHHHHHHHHTT--CSEEECCTTTTS
T ss_pred HHHHHHHHHHHHHCC--CCEEEcCCCccc
Confidence 445556666665544 469999997654
Done!