Query 017161
Match_columns 376
No_of_seqs 484 out of 3044
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0729 26S proteasome regulat 100.0 6.3E-91 1.4E-95 630.1 26.1 367 10-376 19-385 (435)
2 COG1222 RPT1 ATP-dependent 26S 100.0 3.9E-85 8.4E-90 614.7 30.7 347 26-376 13-359 (406)
3 KOG0728 26S proteasome regulat 100.0 9E-71 2E-75 495.0 24.3 335 33-376 21-355 (404)
4 KOG0652 26S proteasome regulat 100.0 1.7E-67 3.6E-72 476.3 22.3 344 28-376 19-379 (424)
5 KOG0726 26S proteasome regulat 100.0 6.4E-67 1.4E-71 478.5 20.7 341 16-376 53-393 (440)
6 KOG0727 26S proteasome regulat 100.0 2.3E-65 5.1E-70 460.5 23.0 327 34-376 37-363 (408)
7 PTZ00454 26S protease regulato 100.0 2.3E-55 5E-60 434.6 31.1 326 35-376 28-353 (398)
8 PTZ00361 26 proteosome regulat 100.0 1.1E-53 2.3E-58 425.5 29.8 300 73-376 92-391 (438)
9 KOG0651 26S proteasome regulat 100.0 5.2E-54 1.1E-58 396.7 16.7 290 82-376 51-340 (388)
10 KOG0730 AAA+-type ATPase [Post 100.0 6.6E-53 1.4E-57 422.1 19.4 225 149-376 415-639 (693)
11 PRK03992 proteasome-activating 100.0 5.8E-51 1.2E-55 404.2 31.8 327 34-376 13-339 (389)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-51 2.2E-56 408.6 21.7 225 149-376 492-720 (802)
13 TIGR01242 26Sp45 26S proteasom 100.0 9.8E-49 2.1E-53 385.9 31.8 326 35-376 5-330 (364)
14 KOG0736 Peroxisome assembly fa 100.0 3.2E-47 6.9E-52 384.7 21.4 217 158-376 662-882 (953)
15 KOG0734 AAA+-type ATPase conta 100.0 2.2E-47 4.7E-52 372.9 17.0 212 161-376 297-508 (752)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 1.2E-46 2.6E-51 372.6 19.0 210 163-376 185-398 (802)
17 KOG0731 AAA+-type ATPase conta 100.0 1.6E-44 3.4E-49 371.5 20.4 216 160-376 303-520 (774)
18 KOG0735 AAA+-type ATPase [Post 100.0 8.6E-43 1.9E-47 349.8 20.9 214 160-376 659-872 (952)
19 TIGR03689 pup_AAA proteasome A 100.0 7.7E-42 1.7E-46 344.8 27.6 248 102-354 119-380 (512)
20 COG0465 HflB ATP-dependent Zn 100.0 6.6E-43 1.4E-47 354.1 19.2 217 159-376 141-357 (596)
21 KOG0738 AAA+-type ATPase [Post 100.0 4.6E-43 1E-47 332.3 16.4 214 158-376 202-419 (491)
22 KOG0739 AAA+-type ATPase [Post 100.0 6E-43 1.3E-47 321.7 15.7 216 155-376 120-337 (439)
23 COG1223 Predicted ATPase (AAA+ 100.0 2.7E-40 5.8E-45 299.3 16.0 209 160-376 113-321 (368)
24 TIGR01243 CDC48 AAA family ATP 100.0 2E-39 4.3E-44 345.6 22.0 217 158-376 443-659 (733)
25 KOG0737 AAA+-type ATPase [Post 100.0 1.5E-39 3.2E-44 308.1 15.7 210 162-376 86-298 (386)
26 COG0464 SpoVK ATPases of the A 100.0 3.3E-39 7.1E-44 330.3 19.5 214 160-376 234-449 (494)
27 TIGR01241 FtsH_fam ATP-depende 100.0 7E-38 1.5E-42 320.2 20.2 218 158-376 45-262 (495)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 2.2E-36 4.8E-41 305.4 20.2 208 162-376 222-431 (489)
29 CHL00176 ftsH cell division pr 100.0 1.9E-36 4.2E-41 314.5 19.4 215 161-376 176-390 (638)
30 PLN00020 ribulose bisphosphate 100.0 4.1E-35 8.9E-40 280.6 17.2 207 163-376 110-338 (413)
31 KOG0730 AAA+-type ATPase [Post 100.0 6.4E-35 1.4E-39 292.9 17.4 208 163-376 180-388 (693)
32 KOG0732 AAA+-type ATPase conta 100.0 6.6E-35 1.4E-39 307.5 15.9 214 160-376 257-476 (1080)
33 PRK10733 hflB ATP-dependent me 100.0 5.2E-34 1.1E-38 298.9 20.2 215 161-376 145-359 (644)
34 KOG0741 AAA+-type ATPase [Post 100.0 4.6E-35 1E-39 286.4 10.9 214 160-376 211-442 (744)
35 TIGR01243 CDC48 AAA family ATP 100.0 3.9E-33 8.4E-38 297.4 20.3 212 162-376 172-383 (733)
36 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.5E-33 9.8E-38 304.4 17.1 178 190-376 1618-1844(2281)
37 KOG0740 AAA+-type ATPase [Post 100.0 4.3E-33 9.4E-38 272.5 14.7 215 156-376 141-358 (428)
38 KOG0743 AAA+-type ATPase [Post 99.9 1.1E-23 2.3E-28 205.3 15.6 200 161-370 194-399 (457)
39 PF00004 AAA: ATPase family as 99.9 1.1E-22 2.4E-27 170.6 13.7 130 205-338 1-132 (132)
40 CHL00181 cbbX CbbX; Provisiona 99.9 4.4E-21 9.5E-26 183.0 16.0 176 168-356 23-213 (287)
41 TIGR02881 spore_V_K stage V sp 99.9 9.3E-21 2E-25 178.7 16.6 177 167-357 5-196 (261)
42 KOG0744 AAA+-type ATPase [Post 99.9 1.1E-21 2.3E-26 183.3 8.3 187 166-354 140-342 (423)
43 PF05496 RuvB_N: Holliday junc 99.8 3E-20 6.6E-25 168.0 16.7 185 160-373 16-214 (233)
44 TIGR02880 cbbX_cfxQ probable R 99.8 1.1E-20 2.3E-25 180.2 14.3 175 169-356 23-212 (284)
45 KOG0742 AAA+-type ATPase [Post 99.8 6.7E-20 1.4E-24 175.8 13.9 201 163-375 350-578 (630)
46 COG0542 clpA ATP-binding subun 99.8 1.9E-19 4.1E-24 187.8 12.0 270 21-354 387-707 (786)
47 TIGR02639 ClpA ATP-dependent C 99.8 1.3E-18 2.8E-23 185.7 16.5 189 161-374 175-385 (731)
48 KOG0735 AAA+-type ATPase [Post 99.8 1.5E-18 3.2E-23 175.9 15.2 175 199-374 428-609 (952)
49 PRK00080 ruvB Holliday junctio 99.8 3.5E-18 7.6E-23 166.4 17.3 187 159-374 16-216 (328)
50 COG2256 MGS1 ATPase related to 99.8 2.1E-18 4.5E-23 166.1 14.2 172 160-372 16-204 (436)
51 KOG0736 Peroxisome assembly fa 99.8 2E-18 4.4E-23 176.3 14.9 196 169-374 402-598 (953)
52 TIGR00635 ruvB Holliday juncti 99.8 7.6E-18 1.6E-22 162.1 16.8 180 166-374 2-195 (305)
53 COG0464 SpoVK ATPases of the A 99.8 6.8E-18 1.5E-22 173.1 17.0 186 186-376 2-187 (494)
54 TIGR00763 lon ATP-dependent pr 99.8 4E-18 8.8E-23 182.9 15.7 167 168-352 320-505 (775)
55 PRK11034 clpA ATP-dependent Cl 99.8 7.3E-18 1.6E-22 178.8 14.9 177 162-363 180-373 (758)
56 PLN03025 replication factor C 99.8 1.8E-17 3.9E-22 160.7 16.0 178 157-372 2-192 (319)
57 PRK14956 DNA polymerase III su 99.8 1.8E-17 3.9E-22 166.1 15.7 179 158-373 8-215 (484)
58 COG2255 RuvB Holliday junction 99.7 1.9E-17 4.1E-22 153.0 14.5 183 162-373 20-216 (332)
59 PRK04195 replication factor C 99.7 3.6E-17 7.9E-22 167.1 18.2 185 156-372 2-194 (482)
60 PRK07003 DNA polymerase III su 99.7 3.4E-17 7.4E-22 170.0 16.5 179 158-373 6-213 (830)
61 PRK12323 DNA polymerase III su 99.7 2.1E-17 4.6E-22 169.6 12.8 179 158-373 6-218 (700)
62 PRK12402 replication factor C 99.7 1.8E-16 3.8E-21 154.3 18.6 185 156-372 3-218 (337)
63 PRK14962 DNA polymerase III su 99.7 1E-16 2.3E-21 162.3 16.1 178 158-372 4-210 (472)
64 TIGR03345 VI_ClpV1 type VI sec 99.7 1E-16 2.2E-21 172.9 16.4 189 161-375 180-391 (852)
65 PRK10865 protein disaggregatio 99.7 9.1E-17 2E-21 173.6 16.0 188 160-373 170-380 (857)
66 CHL00095 clpC Clp protease ATP 99.7 2.8E-17 6E-22 177.5 11.7 165 169-354 510-734 (821)
67 PHA02544 44 clamp loader, smal 99.7 2E-16 4.3E-21 153.0 15.6 165 155-352 8-173 (316)
68 PRK07940 DNA polymerase III su 99.7 1.4E-16 3E-21 158.0 13.9 179 166-375 3-208 (394)
69 PRK13342 recombination factor 99.7 2.7E-16 5.8E-21 157.7 16.2 173 158-372 2-188 (413)
70 PRK14960 DNA polymerase III su 99.7 2.1E-16 4.6E-21 162.6 15.5 177 159-372 6-211 (702)
71 PRK07994 DNA polymerase III su 99.7 2.7E-16 5.9E-21 163.4 16.3 178 159-373 7-213 (647)
72 PRK14949 DNA polymerase III su 99.7 3.7E-16 8.1E-21 165.1 16.4 185 158-373 6-213 (944)
73 PRK14961 DNA polymerase III su 99.7 3.4E-16 7.4E-21 154.4 15.2 184 158-372 6-212 (363)
74 PRK14958 DNA polymerase III su 99.7 2.3E-16 4.9E-21 161.4 14.0 178 158-372 6-212 (509)
75 CHL00095 clpC Clp protease ATP 99.7 3.3E-16 7.2E-21 169.2 16.0 188 162-375 173-382 (821)
76 TIGR03346 chaperone_ClpB ATP-d 99.7 4.6E-16 9.9E-21 168.6 17.0 189 160-374 165-376 (852)
77 KOG0989 Replication factor C, 99.7 2.5E-16 5.5E-21 146.9 12.6 183 155-372 23-222 (346)
78 PRK11034 clpA ATP-dependent Cl 99.7 2.8E-16 6E-21 166.8 14.2 164 169-353 459-667 (758)
79 TIGR02902 spore_lonB ATP-depen 99.7 1.8E-16 3.8E-21 163.4 11.9 212 129-370 26-295 (531)
80 PRK06645 DNA polymerase III su 99.7 1.1E-15 2.4E-20 155.7 16.5 187 156-373 9-222 (507)
81 PRK14964 DNA polymerase III su 99.7 1.7E-15 3.6E-20 153.3 16.0 177 159-372 4-209 (491)
82 PRK14963 DNA polymerase III su 99.7 2.1E-15 4.6E-20 153.9 16.9 177 160-373 6-210 (504)
83 PRK07764 DNA polymerase III su 99.7 1.4E-15 3E-20 162.7 16.0 178 158-372 5-213 (824)
84 COG0466 Lon ATP-dependent Lon 99.7 1.1E-15 2.4E-20 156.1 13.8 168 167-352 322-508 (782)
85 PRK08691 DNA polymerase III su 99.6 1.7E-15 3.7E-20 157.1 15.1 184 158-372 6-212 (709)
86 PRK05896 DNA polymerase III su 99.6 1.6E-15 3.5E-20 155.8 14.8 179 157-372 5-212 (605)
87 PRK14957 DNA polymerase III su 99.6 2.9E-15 6.4E-20 153.5 16.5 178 158-372 6-212 (546)
88 PRK00440 rfc replication facto 99.6 2.8E-15 6E-20 144.7 15.6 181 155-373 4-196 (319)
89 PRK14951 DNA polymerase III su 99.6 1.6E-15 3.5E-20 157.3 14.6 185 157-372 5-217 (618)
90 PRK05563 DNA polymerase III su 99.6 4.3E-15 9.4E-20 153.8 16.9 176 160-372 8-212 (559)
91 KOG2004 Mitochondrial ATP-depe 99.6 1.4E-15 3E-20 154.8 12.6 173 162-352 405-596 (906)
92 PRK14952 DNA polymerase III su 99.6 4.3E-15 9.3E-20 153.5 16.4 176 160-372 5-211 (584)
93 PRK14959 DNA polymerase III su 99.6 3E-15 6.5E-20 154.5 15.2 178 158-372 6-212 (624)
94 PRK07133 DNA polymerase III su 99.6 3.3E-15 7.2E-20 156.3 15.7 185 157-372 7-211 (725)
95 TIGR02639 ClpA ATP-dependent C 99.6 1.8E-15 3.9E-20 161.7 14.0 165 169-354 455-664 (731)
96 TIGR00362 DnaA chromosomal rep 99.6 6.4E-15 1.4E-19 147.5 17.0 183 162-372 104-302 (405)
97 PRK05342 clpX ATP-dependent pr 99.6 5.3E-15 1.1E-19 147.4 15.9 178 170-349 73-322 (412)
98 TIGR02397 dnaX_nterm DNA polym 99.6 5.7E-15 1.2E-19 144.9 15.9 179 157-372 3-210 (355)
99 PRK06893 DNA replication initi 99.6 6.8E-15 1.5E-19 136.1 15.1 180 159-372 7-195 (229)
100 PRK14969 DNA polymerase III su 99.6 2.6E-15 5.6E-20 154.4 13.3 178 158-372 6-212 (527)
101 PRK00149 dnaA chromosomal repl 99.6 5.8E-15 1.3E-19 149.7 15.7 186 161-372 115-314 (450)
102 PRK14970 DNA polymerase III su 99.6 6.4E-15 1.4E-19 145.6 15.5 184 157-372 6-201 (367)
103 PRK06305 DNA polymerase III su 99.6 8.5E-15 1.9E-19 148.0 16.3 178 158-372 7-214 (451)
104 PRK13341 recombination factor 99.6 5.3E-15 1.1E-19 156.4 15.3 174 157-372 17-209 (725)
105 PRK14965 DNA polymerase III su 99.6 4.2E-15 9E-20 154.5 14.3 177 159-372 7-212 (576)
106 TIGR03345 VI_ClpV1 type VI sec 99.6 1.5E-15 3.2E-20 163.9 11.2 164 169-354 567-782 (852)
107 PRK08727 hypothetical protein; 99.6 3E-14 6.5E-19 132.2 17.0 174 160-372 11-196 (233)
108 PRK10787 DNA-binding ATP-depen 99.6 9.2E-15 2E-19 156.3 15.4 167 168-353 322-507 (784)
109 PRK14953 DNA polymerase III su 99.6 1E-14 2.2E-19 148.4 15.1 185 157-372 5-212 (486)
110 PF00308 Bac_DnaA: Bacterial d 99.6 2.9E-14 6.3E-19 131.0 15.6 182 163-372 3-200 (219)
111 PRK08084 DNA replication initi 99.6 4E-14 8.6E-19 131.6 16.6 174 161-372 15-201 (235)
112 PRK08903 DnaA regulatory inact 99.6 4.6E-14 1E-18 130.2 16.4 171 160-372 10-191 (227)
113 PRK06647 DNA polymerase III su 99.6 2E-14 4.3E-19 148.6 15.2 183 159-372 7-212 (563)
114 PRK08451 DNA polymerase III su 99.6 3.3E-14 7.1E-19 145.2 16.2 178 158-372 4-210 (535)
115 PRK09111 DNA polymerase III su 99.6 4.2E-14 9.1E-19 146.9 17.3 187 156-373 12-226 (598)
116 PRK14086 dnaA chromosomal repl 99.6 3.1E-14 6.7E-19 146.5 15.8 183 162-371 282-479 (617)
117 TIGR00382 clpX endopeptidase C 99.6 2.6E-14 5.5E-19 142.0 14.6 179 170-350 79-329 (413)
118 TIGR03420 DnaA_homol_Hda DnaA 99.6 5.6E-14 1.2E-18 129.1 15.8 172 163-372 10-193 (226)
119 TIGR02928 orc1/cdc6 family rep 99.6 5.2E-14 1.1E-18 138.7 16.4 166 166-353 13-213 (365)
120 PRK14948 DNA polymerase III su 99.6 4.2E-14 9.1E-19 147.7 16.3 184 158-372 6-214 (620)
121 TIGR00390 hslU ATP-dependent p 99.6 1.1E-14 2.4E-19 143.2 11.0 177 170-348 14-342 (441)
122 KOG2028 ATPase related to the 99.6 1.9E-14 4.2E-19 136.9 11.8 174 159-373 129-329 (554)
123 PTZ00112 origin recognition co 99.6 6.3E-14 1.4E-18 146.7 16.4 188 165-375 752-973 (1164)
124 PRK10865 protein disaggregatio 99.6 7.4E-14 1.6E-18 151.2 17.4 167 167-354 567-781 (857)
125 PRK14955 DNA polymerase III su 99.6 3E-14 6.5E-19 142.2 13.1 183 159-372 7-220 (397)
126 PF05673 DUF815: Protein of un 99.6 1.4E-13 3E-18 126.4 16.2 169 158-359 17-214 (249)
127 PRK14088 dnaA chromosomal repl 99.6 5.1E-14 1.1E-18 142.1 14.5 184 161-372 98-297 (440)
128 PRK14954 DNA polymerase III su 99.6 8.3E-14 1.8E-18 144.9 16.3 183 159-372 7-220 (620)
129 cd00009 AAA The AAA+ (ATPases 99.6 1.3E-13 2.8E-18 115.9 14.6 140 172-337 2-150 (151)
130 PRK05201 hslU ATP-dependent pr 99.5 1.8E-14 4E-19 141.7 10.6 177 170-348 17-344 (443)
131 TIGR02640 gas_vesic_GvpN gas v 99.5 6.2E-14 1.3E-18 132.3 13.9 136 201-352 20-198 (262)
132 PRK12422 chromosomal replicati 99.5 1.4E-13 3.1E-18 138.7 16.5 187 162-371 105-304 (445)
133 PRK00411 cdc6 cell division co 99.5 2.2E-13 4.8E-18 135.6 17.6 188 166-375 28-246 (394)
134 PRK05642 DNA replication initi 99.5 5.4E-13 1.2E-17 123.9 18.4 147 202-372 45-200 (234)
135 TIGR03346 chaperone_ClpB ATP-d 99.5 1.3E-13 2.9E-18 149.5 16.0 165 168-353 565-777 (852)
136 PRK14950 DNA polymerase III su 99.5 2.3E-13 5E-18 142.1 15.4 183 159-372 7-213 (585)
137 PRK14971 DNA polymerase III su 99.5 2.6E-13 5.6E-18 141.8 15.4 178 158-372 7-214 (614)
138 TIGR02903 spore_lon_C ATP-depe 99.5 7.5E-13 1.6E-17 138.6 17.2 183 161-370 147-385 (615)
139 TIGR01650 PD_CobS cobaltochela 99.5 9.9E-14 2.1E-18 133.2 8.6 142 200-355 62-236 (327)
140 PRK14087 dnaA chromosomal repl 99.5 1.2E-12 2.6E-17 132.4 16.8 154 202-372 141-311 (450)
141 PRK06620 hypothetical protein; 99.5 7.4E-13 1.6E-17 121.3 13.6 164 160-372 8-181 (214)
142 COG2812 DnaX DNA polymerase II 99.5 2E-13 4.2E-18 138.1 10.5 182 160-372 8-212 (515)
143 PHA02244 ATPase-like protein 99.5 1.8E-12 3.8E-17 126.0 16.4 131 201-348 118-269 (383)
144 PRK07471 DNA polymerase III su 99.5 2.2E-12 4.8E-17 127.0 16.7 178 162-373 13-231 (365)
145 PRK05564 DNA polymerase III su 99.4 2.3E-12 4.9E-17 124.8 14.9 169 166-372 2-182 (313)
146 PRK09112 DNA polymerase III su 99.4 2.7E-12 5.9E-17 125.7 15.6 180 162-373 17-233 (351)
147 KOG1969 DNA replication checkp 99.4 5.6E-12 1.2E-16 129.1 16.7 197 155-372 258-502 (877)
148 TIGR00678 holB DNA polymerase 99.4 3.8E-12 8.2E-17 114.1 13.9 146 200-374 12-185 (188)
149 PRK13407 bchI magnesium chelat 99.4 5.7E-13 1.2E-17 129.3 8.6 162 162-352 2-216 (334)
150 COG0714 MoxR-like ATPases [Gen 99.4 4.1E-12 8.8E-17 123.8 13.8 151 170-352 26-203 (329)
151 COG0593 DnaA ATPase involved i 99.4 8.7E-12 1.9E-16 122.9 15.5 153 201-370 112-276 (408)
152 PRK09087 hypothetical protein; 99.4 5E-12 1.1E-16 116.7 12.3 168 158-372 11-187 (226)
153 KOG0991 Replication factor C, 99.4 3.4E-12 7.5E-17 115.2 10.5 158 157-352 16-185 (333)
154 KOG1051 Chaperone HSP104 and r 99.3 2.2E-11 4.8E-16 129.4 16.7 129 169-316 563-710 (898)
155 PRK07399 DNA polymerase III su 99.3 1.9E-11 4.1E-16 118.2 14.6 174 166-373 2-214 (314)
156 CHL00081 chlI Mg-protoporyphyr 99.3 4.9E-12 1.1E-16 123.2 10.4 165 162-352 11-232 (350)
157 PF07728 AAA_5: AAA domain (dy 99.3 1.5E-12 3.3E-17 110.6 5.9 112 204-330 1-139 (139)
158 TIGR00602 rad24 checkpoint pro 99.3 2.1E-11 4.5E-16 127.2 15.1 177 155-354 71-289 (637)
159 smart00382 AAA ATPases associa 99.3 1.7E-11 3.7E-16 101.9 11.4 126 202-339 2-147 (148)
160 COG0470 HolB ATPase involved i 99.3 1.7E-11 3.6E-16 118.5 12.9 149 169-349 2-178 (325)
161 COG0542 clpA ATP-binding subun 99.3 2.3E-11 4.9E-16 127.8 14.2 172 161-357 163-351 (786)
162 PRK11331 5-methylcytosine-spec 99.3 3.1E-11 6.8E-16 120.2 14.1 144 167-338 174-357 (459)
163 PF07724 AAA_2: AAA domain (Cd 99.3 6.7E-12 1.4E-16 110.9 8.2 115 201-317 2-130 (171)
164 PRK05707 DNA polymerase III su 99.3 3.6E-11 7.7E-16 116.9 14.0 148 200-372 20-195 (328)
165 COG1474 CDC6 Cdc6-related prot 99.3 6.1E-11 1.3E-15 116.8 14.6 163 168-354 17-205 (366)
166 TIGR02030 BchI-ChlI magnesium 99.3 1.7E-11 3.6E-16 119.3 10.4 158 166-352 2-219 (337)
167 PRK08058 DNA polymerase III su 99.3 3.2E-11 7E-16 117.5 12.4 149 166-350 3-180 (329)
168 COG2607 Predicted ATPase (AAA+ 99.3 1.3E-10 2.8E-15 105.6 15.0 170 159-359 51-246 (287)
169 PF00158 Sigma54_activat: Sigm 99.3 1.7E-11 3.8E-16 108.0 9.0 123 170-317 1-144 (168)
170 PRK04132 replication factor C 99.2 9.2E-11 2E-15 125.3 14.5 146 202-372 564-723 (846)
171 PF01078 Mg_chelatase: Magnesi 99.2 1.6E-11 3.5E-16 110.5 6.9 145 166-341 1-204 (206)
172 TIGR02442 Cob-chelat-sub cobal 99.2 4.3E-11 9.4E-16 126.1 11.0 157 166-351 2-213 (633)
173 COG1224 TIP49 DNA helicase TIP 99.2 2.4E-10 5.2E-15 109.0 14.5 65 166-238 37-103 (450)
174 PRK13531 regulatory ATPase Rav 99.2 1.4E-10 3E-15 116.6 13.5 154 170-351 22-193 (498)
175 PF06068 TIP49: TIP49 C-termin 99.2 2.6E-10 5.6E-15 110.2 14.4 87 262-368 279-378 (398)
176 COG3829 RocR Transcriptional r 99.2 3.7E-11 8.1E-16 120.4 8.3 157 162-346 239-424 (560)
177 smart00763 AAA_PrkA PrkA AAA d 99.2 5.2E-10 1.1E-14 108.8 14.6 164 169-354 52-329 (361)
178 KOG2035 Replication factor C, 99.2 8.8E-10 1.9E-14 102.1 15.1 185 156-372 1-220 (351)
179 PF13177 DNA_pol3_delta2: DNA 99.2 2.4E-10 5.2E-15 100.2 10.9 134 172-339 1-161 (162)
180 PRK08116 hypothetical protein; 99.2 2.9E-10 6.3E-15 107.6 12.2 130 201-349 113-257 (268)
181 PRK11608 pspF phage shock prot 99.2 1.3E-10 2.9E-15 113.1 10.1 151 167-346 5-184 (326)
182 COG1220 HslU ATP-dependent pro 99.2 1.9E-10 4.1E-15 109.0 10.3 85 263-349 252-346 (444)
183 PRK06871 DNA polymerase III su 99.1 9.4E-10 2E-14 106.5 15.4 144 173-351 7-178 (325)
184 TIGR02974 phageshock_pspF psp 99.1 1.5E-10 3.2E-15 112.8 9.8 149 170-346 1-177 (329)
185 COG1219 ClpX ATP-dependent pro 99.1 3E-10 6.4E-15 107.0 10.5 128 170-297 63-201 (408)
186 TIGR01817 nifA Nif-specific re 99.1 9.9E-11 2.1E-15 121.3 7.9 130 162-317 190-341 (534)
187 PRK15424 propionate catabolism 99.1 1.3E-10 2.7E-15 119.6 8.4 154 165-346 216-406 (538)
188 PRK12377 putative replication 99.1 7.6E-10 1.6E-14 103.4 12.7 101 202-317 101-206 (248)
189 PF07726 AAA_3: ATPase family 99.1 2.9E-11 6.3E-16 100.5 2.6 107 204-330 1-129 (131)
190 PRK06964 DNA polymerase III su 99.1 5.3E-10 1.1E-14 109.0 11.7 133 200-351 19-203 (342)
191 COG2204 AtoC Response regulato 99.1 5E-10 1.1E-14 112.1 11.7 154 165-346 138-319 (464)
192 KOG0990 Replication factor C, 99.1 2.8E-10 6.1E-15 107.3 8.9 167 152-353 25-204 (360)
193 COG1221 PspF Transcriptional r 99.1 1.5E-10 3.1E-15 114.0 7.3 154 164-345 74-253 (403)
194 TIGR02329 propionate_PrpR prop 99.1 1.8E-10 3.9E-15 118.5 8.2 155 164-346 208-391 (526)
195 PRK07993 DNA polymerase III su 99.1 1.3E-09 2.8E-14 106.2 13.8 163 173-373 7-197 (334)
196 PRK08181 transposase; Validate 99.1 1.3E-09 2.8E-14 103.0 13.4 101 201-317 105-209 (269)
197 PRK10820 DNA-binding transcrip 99.1 4.2E-10 9.1E-15 116.1 10.7 156 162-345 198-381 (520)
198 TIGR00368 Mg chelatase-related 99.1 4.1E-10 8.8E-15 115.0 10.2 148 164-342 188-394 (499)
199 PRK05022 anaerobic nitric oxid 99.1 4.5E-10 9.8E-15 115.7 10.2 153 166-346 185-365 (509)
200 PRK15429 formate hydrogenlyase 99.1 1.2E-09 2.7E-14 116.4 13.8 155 164-346 372-554 (686)
201 PRK08769 DNA polymerase III su 99.1 3E-09 6.6E-14 102.8 14.8 165 173-373 9-201 (319)
202 PRK07952 DNA replication prote 99.1 1.7E-09 3.8E-14 100.7 12.7 100 203-317 100-205 (244)
203 PRK11388 DNA-binding transcrip 99.1 1.1E-09 2.3E-14 116.1 12.6 154 164-345 321-499 (638)
204 PF14532 Sigma54_activ_2: Sigm 99.0 1.9E-10 4.1E-15 97.9 5.0 106 171-316 1-109 (138)
205 smart00350 MCM minichromosome 99.0 6.6E-10 1.4E-14 114.4 9.3 135 203-353 237-401 (509)
206 KOG0741 AAA+-type ATPase [Post 99.0 1.3E-09 2.8E-14 108.5 10.5 143 202-350 538-684 (744)
207 TIGR00764 lon_rel lon-related 99.0 4.6E-09 9.9E-14 110.1 15.3 53 162-229 12-64 (608)
208 PRK06835 DNA replication prote 99.0 2.6E-09 5.6E-14 103.8 12.0 110 202-326 183-303 (329)
209 PRK06090 DNA polymerase III su 99.0 6.1E-09 1.3E-13 100.6 14.1 144 173-350 8-178 (319)
210 COG3604 FhlA Transcriptional r 99.0 9.2E-10 2E-14 109.3 7.7 155 164-346 219-401 (550)
211 PF01637 Arch_ATPase: Archaeal 99.0 7E-09 1.5E-13 94.7 12.6 179 171-374 2-228 (234)
212 PF03215 Rad17: Rad17 cell cyc 99.0 1.1E-08 2.3E-13 105.0 15.1 198 154-372 5-255 (519)
213 PRK06526 transposase; Provisio 99.0 2.7E-09 5.8E-14 100.2 9.7 101 201-317 97-201 (254)
214 KOG1942 DNA helicase, TBP-inte 99.0 1.7E-08 3.7E-13 94.2 14.5 87 262-368 297-397 (456)
215 PRK08699 DNA polymerase III su 99.0 5E-09 1.1E-13 101.8 11.5 131 200-350 19-183 (325)
216 KOG0745 Putative ATP-dependent 98.9 8.4E-09 1.8E-13 100.7 12.3 95 203-297 227-330 (564)
217 TIGR02031 BchD-ChlD magnesium 98.9 4.9E-09 1.1E-13 109.6 11.6 134 203-352 17-174 (589)
218 COG1484 DnaC DNA replication p 98.9 1.2E-08 2.6E-13 95.9 12.3 117 173-317 88-209 (254)
219 PF01695 IstB_IS21: IstB-like 98.9 2.6E-09 5.6E-14 95.1 7.4 102 200-317 45-150 (178)
220 TIGR03015 pepcterm_ATPase puta 98.9 1.1E-08 2.4E-13 96.3 12.2 158 203-375 44-233 (269)
221 COG1239 ChlI Mg-chelatase subu 98.9 1.8E-08 4E-13 98.7 13.1 163 165-354 14-234 (423)
222 PRK06921 hypothetical protein; 98.9 1.7E-08 3.7E-13 95.4 12.5 105 201-317 116-225 (266)
223 PF13173 AAA_14: AAA domain 98.9 2E-08 4.3E-13 84.3 11.5 120 203-343 3-126 (128)
224 PRK09183 transposase/IS protei 98.9 8.8E-09 1.9E-13 97.1 10.3 103 200-317 100-206 (259)
225 PRK09862 putative ATP-dependen 98.9 8.2E-09 1.8E-13 105.3 10.4 147 165-342 188-391 (506)
226 KOG2227 Pre-initiation complex 98.9 3.5E-08 7.5E-13 97.5 13.2 186 168-375 150-363 (529)
227 PRK08939 primosomal protein Dn 98.8 2.9E-08 6.4E-13 95.6 11.2 102 201-317 155-261 (306)
228 PLN03210 Resistant to P. syrin 98.8 7.3E-08 1.6E-12 108.5 14.8 176 163-373 179-388 (1153)
229 TIGR02915 PEP_resp_reg putativ 98.8 1.9E-08 4.1E-13 101.8 8.4 153 166-346 137-317 (445)
230 PF03969 AFG1_ATPase: AFG1-lik 98.7 3.1E-08 6.7E-13 97.5 8.8 107 199-321 59-173 (362)
231 PTZ00111 DNA replication licen 98.7 5.1E-08 1.1E-12 104.4 10.9 135 200-351 490-656 (915)
232 PRK05917 DNA polymerase III su 98.7 2.7E-07 5.8E-12 87.8 13.3 131 175-339 4-154 (290)
233 PRK13765 ATP-dependent proteas 98.7 6.2E-08 1.3E-12 101.6 9.7 54 159-227 22-75 (637)
234 PRK10923 glnG nitrogen regulat 98.7 7.6E-08 1.7E-12 98.2 9.6 153 166-346 136-316 (469)
235 cd01120 RecA-like_NTPases RecA 98.7 2.3E-07 5E-12 79.6 11.1 111 205-319 2-139 (165)
236 COG0606 Predicted ATPase with 98.7 6.7E-09 1.5E-13 103.1 1.3 48 164-226 175-222 (490)
237 PF12775 AAA_7: P-loop contain 98.7 4E-08 8.8E-13 93.2 6.5 138 201-353 32-194 (272)
238 PF00931 NB-ARC: NB-ARC domain 98.6 5E-07 1.1E-11 85.8 13.5 167 174-373 2-195 (287)
239 PRK11361 acetoacetate metaboli 98.6 1.8E-07 3.9E-12 94.9 10.8 153 166-346 141-321 (457)
240 PF05729 NACHT: NACHT domain 98.6 6.1E-07 1.3E-11 77.5 12.3 140 204-354 2-165 (166)
241 PF12774 AAA_6: Hydrolytic ATP 98.6 4.8E-07 1E-11 83.7 12.0 127 201-348 31-176 (231)
242 PF13401 AAA_22: AAA domain; P 98.6 2.4E-07 5.1E-12 77.3 8.9 73 201-273 3-99 (131)
243 KOG1514 Origin recognition com 98.6 4.4E-07 9.6E-12 93.6 12.0 157 204-375 424-612 (767)
244 PF05621 TniB: Bacterial TniB 98.5 1.2E-06 2.7E-11 83.2 12.9 160 202-375 61-256 (302)
245 KOG2170 ATPase of the AAA+ sup 98.5 2.3E-06 5.1E-11 80.5 14.0 184 169-373 83-322 (344)
246 PRK15115 response regulator Gl 98.5 6.9E-07 1.5E-11 90.5 11.5 150 169-346 135-312 (444)
247 KOG1970 Checkpoint RAD17-RFC c 98.5 3.7E-06 8E-11 84.8 15.7 187 151-356 65-284 (634)
248 TIGR01818 ntrC nitrogen regula 98.5 3.4E-07 7.4E-12 93.2 8.6 158 168-352 134-322 (463)
249 COG3283 TyrR Transcriptional r 98.5 2.3E-07 4.9E-12 89.0 6.4 161 161-346 197-377 (511)
250 PRK07132 DNA polymerase III su 98.5 2.7E-06 5.8E-11 81.7 13.5 124 201-350 17-160 (299)
251 COG1485 Predicted ATPase [Gene 98.5 9.2E-07 2E-11 85.1 10.0 137 199-363 62-207 (367)
252 PRK07276 DNA polymerase III su 98.5 2E-06 4.4E-11 82.0 12.4 143 173-349 7-172 (290)
253 PRK05818 DNA polymerase III su 98.5 1.4E-06 3.1E-11 81.4 10.9 121 200-339 5-147 (261)
254 TIGR02237 recomb_radB DNA repa 98.4 7E-07 1.5E-11 81.1 8.7 116 198-316 8-149 (209)
255 PRK11823 DNA repair protein Ra 98.4 3.3E-06 7.2E-11 85.7 12.1 114 198-315 76-206 (446)
256 KOG2680 DNA helicase TIP49, TB 98.4 4E-06 8.8E-11 78.9 11.6 76 262-357 289-376 (454)
257 cd01124 KaiC KaiC is a circadi 98.4 6.6E-06 1.4E-10 73.0 12.4 103 205-318 2-141 (187)
258 PF13191 AAA_16: AAA ATPase do 98.3 7.8E-07 1.7E-11 78.5 6.2 59 170-238 2-63 (185)
259 KOG2383 Predicted ATPase [Gene 98.3 2.9E-06 6.3E-11 82.6 10.2 138 200-367 112-274 (467)
260 PF00910 RNA_helicase: RNA hel 98.3 1.5E-06 3.3E-11 70.7 7.0 23 205-227 1-23 (107)
261 PRK10365 transcriptional regul 98.3 1.1E-06 2.3E-11 88.9 7.2 150 169-346 140-317 (441)
262 cd01121 Sms Sms (bacterial rad 98.3 4.5E-06 9.7E-11 82.6 11.1 114 198-315 78-208 (372)
263 COG1116 TauB ABC-type nitrate/ 98.3 4E-06 8.6E-11 77.4 9.4 29 198-226 25-53 (248)
264 cd03216 ABC_Carb_Monos_I This 98.3 5.3E-06 1.1E-10 72.6 9.9 108 197-318 21-143 (163)
265 cd00983 recA RecA is a bacter 98.3 4.5E-06 9.6E-11 80.8 9.8 119 198-316 51-191 (325)
266 TIGR02012 tigrfam_recA protein 98.3 5.7E-06 1.2E-10 80.0 10.4 119 198-316 51-191 (321)
267 PRK08533 flagellar accessory p 98.2 1.5E-05 3.2E-10 73.9 12.2 110 198-317 20-163 (230)
268 PRK09361 radB DNA repair and r 98.2 5.6E-06 1.2E-10 76.1 9.3 118 198-317 19-162 (225)
269 cd03238 ABC_UvrA The excision 98.2 1.1E-05 2.5E-10 71.5 10.7 119 198-337 17-162 (176)
270 cd03283 ABC_MutS-like MutS-lik 98.2 8.3E-06 1.8E-10 73.9 9.7 110 196-320 19-151 (199)
271 cd03247 ABCC_cytochrome_bd The 98.2 1.4E-05 3.1E-10 70.7 10.6 109 197-320 23-160 (178)
272 KOG1968 Replication factor C, 98.2 6.5E-06 1.4E-10 88.8 9.7 199 156-371 308-522 (871)
273 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 4.1E-06 9E-11 78.0 7.1 56 251-320 147-202 (254)
274 cd03228 ABCC_MRP_Like The MRP 98.2 8.7E-06 1.9E-10 71.7 8.9 109 197-320 23-158 (171)
275 COG1618 Predicted nucleotide k 98.2 2E-05 4.2E-10 68.1 10.6 26 201-226 4-29 (179)
276 TIGR01618 phage_P_loop phage n 98.2 5.9E-06 1.3E-10 75.8 7.7 97 202-300 12-130 (220)
277 cd01394 radB RadB. The archaea 98.2 1.4E-05 3.1E-10 73.0 10.4 141 198-340 15-188 (218)
278 KOG0478 DNA replication licens 98.1 1E-05 2.2E-10 83.4 9.7 134 202-349 462-623 (804)
279 cd03246 ABCC_Protease_Secretio 98.1 1.7E-05 3.6E-10 70.0 10.0 107 198-318 24-157 (173)
280 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 1.5E-05 3.3E-10 68.3 9.4 104 197-319 21-129 (144)
281 COG1373 Predicted ATPase (AAA+ 98.1 4E-05 8.7E-10 76.7 13.3 129 197-346 33-161 (398)
282 cd03223 ABCD_peroxisomal_ALDP 98.1 2E-05 4.4E-10 69.1 10.0 105 197-318 22-149 (166)
283 cd03222 ABC_RNaseL_inhibitor T 98.1 2.2E-05 4.8E-10 69.8 10.3 106 199-318 22-133 (177)
284 COG5271 MDN1 AAA ATPase contai 98.1 8.5E-06 1.8E-10 90.3 8.7 141 201-356 1542-1707(4600)
285 PRK06067 flagellar accessory p 98.1 3.8E-05 8.3E-10 71.1 12.0 39 198-236 21-62 (234)
286 PRK08118 topology modulation p 98.1 1.6E-05 3.5E-10 70.0 8.9 100 204-353 3-102 (167)
287 TIGR00416 sms DNA repair prote 98.1 3.5E-05 7.6E-10 78.3 12.3 115 198-316 90-221 (454)
288 TIGR02858 spore_III_AA stage I 98.1 9.5E-06 2E-10 76.9 7.6 114 203-337 112-256 (270)
289 PRK13406 bchD magnesium chelat 98.1 6.6E-06 1.4E-10 85.8 7.0 125 203-343 26-173 (584)
290 PF00493 MCM: MCM2/3/5 family 98.1 2.1E-06 4.5E-11 83.9 3.0 132 201-354 56-223 (331)
291 PHA00729 NTP-binding motif con 98.1 5.7E-06 1.2E-10 75.9 5.6 25 203-227 18-42 (226)
292 KOG2228 Origin recognition com 98.0 4.2E-05 9.1E-10 73.2 11.1 161 169-352 25-219 (408)
293 cd00267 ABC_ATPase ABC (ATP-bi 98.0 3.1E-05 6.8E-10 67.0 9.6 109 198-320 21-143 (157)
294 cd03214 ABC_Iron-Siderophores_ 98.0 2.2E-05 4.8E-10 69.7 8.8 110 197-319 20-160 (180)
295 COG1136 SalX ABC-type antimicr 98.0 4.4E-05 9.6E-10 70.1 10.7 65 253-337 152-216 (226)
296 KOG1051 Chaperone HSP104 and r 98.0 7.1E-05 1.5E-09 80.5 13.5 162 167-354 185-365 (898)
297 PF14516 AAA_35: AAA-like doma 98.0 0.00025 5.3E-09 69.3 15.9 162 200-373 29-232 (331)
298 PRK09376 rho transcription ter 98.0 3.9E-05 8.4E-10 75.7 10.0 112 203-314 170-317 (416)
299 PRK09354 recA recombinase A; P 98.0 2.5E-05 5.4E-10 76.3 8.7 118 198-315 56-195 (349)
300 COG2274 SunT ABC-type bacterio 98.0 4.1E-05 8.9E-10 81.6 11.0 65 251-337 617-681 (709)
301 COG4178 ABC-type uncharacteriz 98.0 1.6E-05 3.5E-10 82.2 7.5 107 197-318 414-575 (604)
302 TIGR03877 thermo_KaiC_1 KaiC d 98.0 9.5E-05 2.1E-09 68.7 11.7 39 198-236 17-58 (237)
303 cd03230 ABC_DR_subfamily_A Thi 98.0 3.8E-05 8.2E-10 67.7 8.6 107 198-318 22-156 (173)
304 cd01128 rho_factor Transcripti 98.0 0.00011 2.5E-09 68.8 12.2 116 200-315 14-165 (249)
305 PF13207 AAA_17: AAA domain; P 97.9 6.8E-06 1.5E-10 67.7 3.4 30 205-234 2-31 (121)
306 cd01393 recA_like RecA is a b 97.9 3.9E-05 8.5E-10 70.4 8.6 118 198-316 15-168 (226)
307 PF05707 Zot: Zonular occluden 97.9 1.3E-05 2.7E-10 72.3 5.1 120 205-339 3-146 (193)
308 COG1120 FepC ABC-type cobalami 97.9 7.1E-05 1.5E-09 70.1 10.1 54 251-317 146-199 (258)
309 cd01131 PilT Pilus retraction 97.9 5.7E-05 1.2E-09 68.3 9.2 67 204-270 3-83 (198)
310 cd03280 ABC_MutS2 MutS2 homolo 97.9 9.2E-05 2E-09 66.9 10.6 105 199-317 24-151 (200)
311 cd01123 Rad51_DMC1_radA Rad51_ 97.9 4.1E-05 8.8E-10 70.7 8.4 118 198-316 15-169 (235)
312 COG4555 NatA ABC-type Na+ tran 97.9 7.2E-05 1.6E-09 67.0 9.4 49 257-319 147-195 (245)
313 COG1131 CcmA ABC-type multidru 97.9 6.8E-05 1.5E-09 72.0 10.1 53 255-320 148-200 (293)
314 KOG2543 Origin recognition com 97.9 0.00021 4.5E-09 69.6 13.3 159 169-351 7-192 (438)
315 COG1126 GlnQ ABC-type polar am 97.9 9.4E-05 2E-09 67.0 10.2 52 251-316 144-195 (240)
316 COG3284 AcoR Transcriptional a 97.9 2.8E-05 6.1E-10 79.9 7.6 127 202-345 336-489 (606)
317 cd01129 PulE-GspE PulE/GspE Th 97.9 0.00012 2.6E-09 69.3 11.4 93 165-271 57-159 (264)
318 COG4619 ABC-type uncharacteriz 97.9 6.1E-05 1.3E-09 65.7 8.4 30 197-226 24-53 (223)
319 PRK07261 topology modulation p 97.9 4.4E-05 9.4E-10 67.4 7.8 31 204-234 2-32 (171)
320 cd03232 ABC_PDR_domain2 The pl 97.9 0.00011 2.3E-09 66.0 10.4 107 198-318 29-169 (192)
321 cd03213 ABCG_EPDR ABCG transpo 97.9 8.7E-05 1.9E-09 66.8 9.7 107 198-318 31-172 (194)
322 PRK06581 DNA polymerase III su 97.9 0.00026 5.6E-09 65.4 12.8 135 202-356 15-165 (263)
323 cd03215 ABC_Carb_Monos_II This 97.9 8.1E-05 1.8E-09 66.2 9.4 107 198-318 22-165 (182)
324 PRK13539 cytochrome c biogenes 97.9 0.00014 3E-09 66.0 10.9 61 258-340 142-202 (207)
325 TIGR01420 pilT_fam pilus retra 97.9 7.3E-05 1.6E-09 73.4 9.6 71 201-271 121-205 (343)
326 TIGR03878 thermo_KaiC_2 KaiC d 97.9 0.00014 3E-09 68.6 11.1 38 198-235 32-72 (259)
327 PF06745 KaiC: KaiC; InterPro 97.8 6.7E-05 1.5E-09 69.0 8.7 108 198-315 15-159 (226)
328 PRK04296 thymidine kinase; Pro 97.8 0.00013 2.8E-09 65.5 10.3 70 204-273 4-90 (190)
329 COG1122 CbiO ABC-type cobalt t 97.8 1.8E-05 4E-10 73.4 4.9 49 258-319 153-201 (235)
330 COG2884 FtsE Predicted ATPase 97.8 0.00015 3.3E-09 64.3 10.2 55 253-321 147-201 (223)
331 PRK00131 aroK shikimate kinase 97.8 1.6E-05 3.4E-10 69.5 4.1 34 200-233 2-35 (175)
332 PF13671 AAA_33: AAA domain; P 97.8 6E-05 1.3E-09 63.7 7.5 36 205-242 2-37 (143)
333 cd03281 ABC_MSH5_euk MutS5 hom 97.8 0.00014 3.1E-09 66.5 10.5 110 203-323 30-160 (213)
334 TIGR01359 UMP_CMP_kin_fam UMP- 97.8 0.00023 5E-09 63.0 11.6 34 205-240 2-35 (183)
335 PF04665 Pox_A32: Poxvirus A32 97.8 0.00036 7.8E-09 64.8 13.0 133 200-351 11-169 (241)
336 PRK04841 transcriptional regul 97.8 0.00049 1.1E-08 75.7 16.4 151 202-373 32-218 (903)
337 PF06309 Torsin: Torsin; Inte 97.8 9.7E-05 2.1E-09 61.5 8.2 52 169-226 26-77 (127)
338 cd03226 ABC_cobalt_CbiO_domain 97.8 0.00011 2.4E-09 66.5 9.4 48 258-319 141-188 (205)
339 cd03229 ABC_Class3 This class 97.8 0.00011 2.3E-09 65.2 9.1 109 198-319 22-163 (178)
340 cd03243 ABC_MutS_homologs The 97.8 0.00011 2.3E-09 66.6 9.2 26 199-224 26-51 (202)
341 PF00437 T2SE: Type II/IV secr 97.8 3.8E-05 8.2E-10 72.6 6.5 99 162-271 98-207 (270)
342 cd03217 ABC_FeS_Assembly ABC-t 97.8 0.00011 2.3E-09 66.4 9.2 107 198-318 22-165 (200)
343 COG3854 SpoIIIAA ncharacterize 97.8 0.00014 3E-09 66.4 9.6 71 203-273 138-230 (308)
344 COG1124 DppF ABC-type dipeptid 97.8 9.7E-05 2.1E-09 68.0 8.6 52 253-317 151-202 (252)
345 PRK13541 cytochrome c biogenes 97.8 0.00024 5.2E-09 63.8 11.2 30 197-226 21-50 (195)
346 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 0.00015 3.2E-09 66.2 10.0 49 258-319 155-203 (218)
347 COG1119 ModF ABC-type molybden 97.8 0.00013 2.8E-09 67.3 9.3 63 251-325 179-241 (257)
348 cd01122 GP4d_helicase GP4d_hel 97.8 0.00013 2.9E-09 68.8 9.9 38 198-235 26-67 (271)
349 COG4608 AppF ABC-type oligopep 97.8 0.0001 2.2E-09 68.9 8.6 107 197-316 34-169 (268)
350 COG1241 MCM2 Predicted ATPase 97.8 4.4E-05 9.5E-10 80.2 6.8 133 203-352 320-483 (682)
351 TIGR03880 KaiC_arch_3 KaiC dom 97.8 0.00029 6.2E-09 64.7 11.5 110 198-316 12-153 (224)
352 PRK13538 cytochrome c biogenes 97.8 0.00019 4E-09 65.0 10.0 51 257-321 143-193 (204)
353 PRK13540 cytochrome c biogenes 97.8 0.00022 4.8E-09 64.3 10.3 50 258-321 142-191 (200)
354 cd03269 ABC_putative_ATPase Th 97.7 0.00021 4.7E-09 64.8 10.1 48 257-318 142-189 (210)
355 cd00984 DnaB_C DnaB helicase C 97.7 0.00018 3.8E-09 66.7 9.5 38 198-235 9-50 (242)
356 TIGR03864 PQQ_ABC_ATP ABC tran 97.7 0.00032 6.9E-09 65.0 11.2 51 257-320 146-196 (236)
357 COG1127 Ttg2A ABC-type transpo 97.7 0.00021 4.5E-09 65.7 9.5 55 252-319 154-208 (263)
358 PRK04328 hypothetical protein; 97.7 0.00039 8.5E-09 65.1 11.8 38 198-235 19-59 (249)
359 PRK05973 replicative DNA helic 97.7 0.00063 1.4E-08 63.2 13.0 38 198-235 60-100 (237)
360 PRK15455 PrkA family serine pr 97.7 3.6E-05 7.9E-10 79.1 5.1 62 166-235 74-137 (644)
361 TIGR02211 LolD_lipo_ex lipopro 97.7 0.00024 5.2E-09 64.9 10.1 30 197-226 26-55 (221)
362 PRK13543 cytochrome c biogenes 97.7 0.00032 7E-09 64.0 10.9 51 257-321 151-201 (214)
363 PHA02774 E1; Provisional 97.7 0.00022 4.7E-09 73.5 10.6 58 198-270 430-488 (613)
364 COG1066 Sms Predicted ATP-depe 97.7 0.00039 8.6E-09 68.4 11.9 101 198-298 89-205 (456)
365 TIGR03881 KaiC_arch_4 KaiC dom 97.7 0.00047 1E-08 63.5 11.9 38 198-235 16-56 (229)
366 TIGR01166 cbiO cobalt transpor 97.7 9E-05 2E-09 66.2 6.9 30 197-226 13-42 (190)
367 cd00046 DEXDc DEAD-like helica 97.7 0.00031 6.6E-09 57.7 9.7 24 203-226 1-24 (144)
368 COG5271 MDN1 AAA ATPase contai 97.7 7.8E-05 1.7E-09 83.1 7.4 134 203-351 889-1046(4600)
369 PRK11176 lipid transporter ATP 97.7 0.00019 4E-09 75.4 10.3 30 197-226 364-393 (582)
370 TIGR01188 drrA daunorubicin re 97.7 0.0002 4.2E-09 69.1 9.6 48 257-318 138-185 (302)
371 PRK13537 nodulation ABC transp 97.7 0.00016 3.4E-09 70.0 8.8 48 257-318 152-199 (306)
372 PRK11174 cysteine/glutathione 97.7 0.00014 3.1E-09 76.3 9.3 30 197-226 371-400 (588)
373 cd03227 ABC_Class2 ABC-type Cl 97.7 0.00026 5.7E-09 61.8 9.5 106 201-320 20-144 (162)
374 TIGR02782 TrbB_P P-type conjug 97.7 0.00013 2.8E-09 70.3 8.1 71 201-271 131-214 (299)
375 PRK09519 recA DNA recombinatio 97.7 0.00019 4.1E-09 76.8 10.1 118 198-315 56-195 (790)
376 PF03266 NTPase_1: NTPase; In 97.7 3.1E-05 6.7E-10 68.3 3.5 23 204-226 1-23 (168)
377 PRK05800 cobU adenosylcobinami 97.7 0.0002 4.4E-09 63.2 8.6 107 204-317 3-126 (170)
378 TIGR00960 3a0501s02 Type II (G 97.7 0.00025 5.4E-09 64.6 9.6 47 258-318 153-199 (216)
379 cd03292 ABC_FtsE_transporter F 97.7 0.00032 7E-09 63.7 10.2 29 198-226 23-51 (214)
380 cd03233 ABC_PDR_domain1 The pl 97.7 0.00029 6.2E-09 63.8 9.8 108 198-317 29-180 (202)
381 PF13604 AAA_30: AAA domain; P 97.7 0.00014 3E-09 65.7 7.7 34 202-235 18-54 (196)
382 PRK09544 znuC high-affinity zi 97.7 0.00015 3.3E-09 68.0 8.2 30 197-226 25-54 (251)
383 PRK11629 lolD lipoprotein tran 97.7 0.00028 6E-09 65.2 9.9 49 258-319 160-208 (233)
384 cd03268 ABC_BcrA_bacitracin_re 97.7 0.0003 6.4E-09 63.8 9.9 49 257-319 140-188 (208)
385 TIGR02238 recomb_DMC1 meiotic 97.7 0.0002 4.4E-09 69.4 9.2 117 198-315 92-244 (313)
386 PRK06762 hypothetical protein; 97.7 0.00015 3.3E-09 63.2 7.6 40 202-241 2-41 (166)
387 cd03262 ABC_HisP_GlnQ_permease 97.7 0.00022 4.8E-09 64.8 9.0 48 258-319 150-197 (213)
388 cd03259 ABC_Carb_Solutes_like 97.7 0.00027 5.8E-09 64.3 9.5 48 258-318 145-192 (213)
389 TIGR03796 NHPM_micro_ABC1 NHPM 97.7 0.00021 4.5E-09 76.9 10.0 30 197-226 500-529 (710)
390 PRK10790 putative multidrug tr 97.6 0.00023 4.9E-09 74.9 10.0 30 197-226 362-391 (592)
391 smart00534 MUTSac ATPase domai 97.6 0.00046 9.9E-09 61.6 10.6 101 205-318 2-123 (185)
392 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.6 0.00029 6.2E-09 64.9 9.5 30 197-226 43-72 (224)
393 TIGR01189 ccmA heme ABC export 97.6 0.00046 1E-08 62.1 10.6 30 197-226 21-50 (198)
394 cd03293 ABC_NrtD_SsuB_transpor 97.6 0.00031 6.7E-09 64.3 9.6 48 258-318 146-193 (220)
395 cd03231 ABC_CcmA_heme_exporter 97.6 0.00011 2.3E-09 66.5 6.4 51 257-321 139-189 (201)
396 COG1117 PstB ABC-type phosphat 97.6 0.00035 7.6E-09 63.2 9.5 27 198-224 29-55 (253)
397 PLN03187 meiotic recombination 97.6 0.00019 4.2E-09 70.2 8.6 117 198-315 122-274 (344)
398 cd03266 ABC_NatA_sodium_export 97.6 0.00047 1E-08 62.9 10.7 47 258-318 151-197 (218)
399 cd03301 ABC_MalK_N The N-termi 97.6 0.00038 8.2E-09 63.3 10.1 48 258-318 145-192 (213)
400 cd03218 ABC_YhbG The ABC trans 97.6 0.00033 7.1E-09 64.6 9.7 47 258-318 148-194 (232)
401 cd00544 CobU Adenosylcobinamid 97.6 0.00027 5.8E-09 62.4 8.6 107 205-317 2-126 (169)
402 COG2804 PulE Type II secretory 97.6 0.00033 7.1E-09 70.8 10.2 95 163-271 233-337 (500)
403 KOG0480 DNA replication licens 97.6 0.00028 6.1E-09 72.5 9.8 163 169-353 346-543 (764)
404 PRK13536 nodulation factor exp 97.6 0.00025 5.5E-09 69.5 9.2 49 257-319 186-234 (340)
405 TIGR03797 NHPM_micro_ABC2 NHPM 97.6 0.00026 5.7E-09 75.8 10.1 30 197-226 474-503 (686)
406 TIGR01288 nodI ATP-binding ABC 97.6 0.00027 5.8E-09 68.1 9.2 48 257-318 149-196 (303)
407 TIGR03740 galliderm_ABC gallid 97.6 0.0005 1.1E-08 63.0 10.5 49 257-319 138-186 (223)
408 cd03278 ABC_SMC_barmotin Barmo 97.6 0.00069 1.5E-08 61.2 11.2 55 260-336 134-188 (197)
409 PHA02624 large T antigen; Prov 97.6 0.00017 3.7E-09 74.5 8.0 121 198-338 427-561 (647)
410 TIGR03608 L_ocin_972_ABC putat 97.6 0.0004 8.8E-09 62.7 9.8 47 258-318 149-195 (206)
411 TIGR03375 type_I_sec_LssB type 97.6 0.00027 5.9E-09 75.8 10.0 62 254-337 612-673 (694)
412 PRK04301 radA DNA repair and r 97.6 0.00029 6.3E-09 68.4 9.3 117 198-315 98-251 (317)
413 cd03265 ABC_DrrA DrrA is the A 97.6 0.00048 1E-08 63.0 10.2 29 198-226 22-50 (220)
414 TIGR02655 circ_KaiC circadian 97.6 0.00055 1.2E-08 70.3 11.6 112 198-318 17-168 (484)
415 TIGR02525 plasmid_TraJ plasmid 97.6 0.00043 9.3E-09 68.5 10.3 69 203-271 150-235 (372)
416 PRK13657 cyclic beta-1,2-gluca 97.6 0.00034 7.3E-09 73.6 10.1 29 198-226 357-385 (588)
417 PRK04040 adenylate kinase; Pro 97.6 0.00062 1.3E-08 61.1 10.4 37 202-238 2-38 (188)
418 cd03250 ABCC_MRP_domain1 Domai 97.6 0.00065 1.4E-08 61.4 10.7 29 198-226 27-55 (204)
419 cd03225 ABC_cobalt_CbiO_domain 97.6 0.00011 2.5E-09 66.6 5.6 46 259-318 150-195 (211)
420 COG4618 ArpD ABC-type protease 97.6 0.00035 7.7E-09 70.3 9.4 80 254-354 483-565 (580)
421 TIGR02788 VirB11 P-type DNA tr 97.6 0.00029 6.3E-09 68.1 8.7 76 196-271 138-228 (308)
422 cd03287 ABC_MSH3_euk MutS3 hom 97.6 0.00048 1E-08 63.5 9.7 105 200-319 29-156 (222)
423 cd03263 ABC_subfamily_A The AB 97.6 0.00048 1E-08 62.9 9.8 48 258-320 148-195 (220)
424 PRK11650 ugpC glycerol-3-phosp 97.6 0.0005 1.1E-08 67.8 10.5 49 257-318 148-196 (356)
425 TIGR02673 FtsE cell division A 97.6 0.00042 9.1E-09 63.0 9.3 30 197-226 23-52 (214)
426 PRK13947 shikimate kinase; Pro 97.6 6.4E-05 1.4E-09 65.8 3.7 31 204-234 3-33 (171)
427 TIGR00767 rho transcription te 97.6 0.00052 1.1E-08 68.1 10.4 116 199-314 165-316 (415)
428 TIGR02857 CydD thiol reductant 97.6 0.00036 7.8E-09 72.4 9.9 30 197-226 343-372 (529)
429 PRK11160 cysteine/glutathione 97.6 0.00027 5.8E-09 74.2 8.9 30 197-226 361-390 (574)
430 COG0703 AroK Shikimate kinase 97.6 0.00024 5.2E-09 62.4 7.1 32 203-234 3-34 (172)
431 PRK12723 flagellar biosynthesi 97.6 0.00076 1.6E-08 67.1 11.6 26 201-226 173-198 (388)
432 PRK10584 putative ABC transpor 97.6 0.00052 1.1E-08 63.1 9.8 30 197-226 31-60 (228)
433 cd03239 ABC_SMC_head The struc 97.6 0.00098 2.1E-08 59.2 11.2 100 204-318 24-159 (178)
434 TIGR02533 type_II_gspE general 97.5 0.00065 1.4E-08 69.7 11.4 95 163-271 217-321 (486)
435 PRK03839 putative kinase; Prov 97.5 6.5E-05 1.4E-09 66.6 3.6 31 204-234 2-32 (180)
436 cd03224 ABC_TM1139_LivF_branch 97.5 0.00042 9.1E-09 63.4 9.0 45 260-318 149-193 (222)
437 cd03254 ABCC_Glucan_exporter_l 97.5 0.00084 1.8E-08 61.7 11.1 29 198-226 25-53 (229)
438 TIGR02236 recomb_radA DNA repa 97.5 0.00042 9.1E-09 67.0 9.4 117 198-315 91-245 (310)
439 PRK13635 cbiO cobalt transport 97.5 0.00015 3.2E-09 69.2 6.2 50 257-319 154-203 (279)
440 PF07693 KAP_NTPase: KAP famil 97.5 0.0015 3.3E-08 63.1 13.3 80 260-354 171-265 (325)
441 PRK11248 tauB taurine transpor 97.5 0.00055 1.2E-08 64.3 9.9 49 258-319 143-191 (255)
442 cd03258 ABC_MetN_methionine_tr 97.5 0.00032 6.9E-09 64.7 8.2 30 197-226 26-55 (233)
443 TIGR02688 conserved hypothetic 97.5 0.00069 1.5E-08 67.6 10.8 79 200-297 207-289 (449)
444 cd00464 SK Shikimate kinase (S 97.5 7.9E-05 1.7E-09 63.8 3.8 37 204-242 1-37 (154)
445 cd03298 ABC_ThiQ_thiamine_tran 97.5 0.00013 2.8E-09 66.3 5.4 30 197-226 19-48 (211)
446 PRK10908 cell division protein 97.5 0.00062 1.4E-08 62.3 9.9 30 197-226 23-52 (222)
447 TIGR01846 type_I_sec_HlyB type 97.5 0.00043 9.2E-09 74.3 10.2 30 197-226 478-507 (694)
448 PRK13648 cbiO cobalt transport 97.5 0.00079 1.7E-08 63.7 10.9 29 198-226 31-59 (269)
449 TIGR01184 ntrCD nitrate transp 97.5 0.00015 3.2E-09 67.1 5.7 48 258-318 129-176 (230)
450 PRK13695 putative NTPase; Prov 97.5 0.0013 2.8E-08 57.9 11.6 23 204-226 2-24 (174)
451 cd03369 ABCC_NFT1 Domain 2 of 97.5 0.00073 1.6E-08 61.2 10.2 29 198-226 30-58 (207)
452 COG3842 PotA ABC-type spermidi 97.5 0.00013 2.8E-09 71.3 5.5 27 199-225 28-54 (352)
453 TIGR02204 MsbA_rel ABC transpo 97.5 0.00044 9.6E-09 72.4 9.9 30 197-226 361-390 (576)
454 PRK11247 ssuB aliphatic sulfon 97.5 0.00051 1.1E-08 64.7 9.3 29 198-226 34-62 (257)
455 cd03282 ABC_MSH4_euk MutS4 hom 97.5 0.00071 1.5E-08 61.5 9.9 104 200-320 27-154 (204)
456 TIGR02655 circ_KaiC circadian 97.5 0.00078 1.7E-08 69.3 11.4 77 198-274 259-366 (484)
457 cd03296 ABC_CysA_sulfate_impor 97.5 0.00028 6.2E-09 65.4 7.5 29 198-226 24-52 (239)
458 COG4988 CydD ABC-type transpor 97.5 0.00079 1.7E-08 69.0 11.1 54 251-319 464-517 (559)
459 TIGR02203 MsbA_lipidA lipid A 97.5 0.00053 1.2E-08 71.7 10.4 29 198-226 354-382 (571)
460 COG4650 RtcR Sigma54-dependent 97.5 0.00028 6E-09 66.6 7.2 88 196-298 202-308 (531)
461 TIGR00968 3a0106s01 sulfate AB 97.5 0.00015 3.3E-09 67.2 5.6 29 198-226 22-50 (237)
462 TIGR02868 CydC thiol reductant 97.5 0.00073 1.6E-08 70.1 11.3 30 197-226 356-385 (529)
463 PRK13644 cbiO cobalt transport 97.5 0.00053 1.2E-08 65.1 9.4 50 257-320 150-199 (274)
464 cd03235 ABC_Metallic_Cations A 97.5 0.00048 1E-08 62.7 8.7 47 259-319 148-194 (213)
465 cd03251 ABCC_MsbA MsbA is an e 97.5 0.0011 2.3E-08 61.2 11.2 49 257-320 152-200 (234)
466 PTZ00035 Rad51 protein; Provis 97.5 0.00048 1E-08 67.4 9.2 116 198-314 114-265 (337)
467 PRK13632 cbiO cobalt transport 97.5 0.00083 1.8E-08 63.6 10.6 29 198-226 31-59 (271)
468 cd03237 ABC_RNaseL_inhibitor_d 97.5 0.00097 2.1E-08 62.4 10.9 50 256-318 128-177 (246)
469 PRK13546 teichoic acids export 97.5 0.00076 1.6E-08 63.8 10.3 30 197-226 45-74 (264)
470 cd03261 ABC_Org_Solvent_Resist 97.5 0.00055 1.2E-08 63.3 9.2 29 198-226 22-50 (235)
471 PRK09452 potA putrescine/sperm 97.5 0.00024 5.1E-09 70.6 7.1 30 197-226 35-64 (375)
472 cd03244 ABCC_MRP_domain2 Domai 97.5 0.0012 2.5E-08 60.4 11.2 29 198-226 26-54 (221)
473 TIGR02239 recomb_RAD51 DNA rep 97.5 0.00035 7.5E-09 67.8 8.0 117 198-315 92-244 (316)
474 cd03253 ABCC_ATM1_transporter 97.5 0.00098 2.1E-08 61.5 10.7 49 257-320 151-199 (236)
475 PRK00625 shikimate kinase; Pro 97.5 9.4E-05 2E-09 65.5 3.7 31 204-234 2-32 (173)
476 TIGR01842 type_I_sec_PrtD type 97.5 0.00057 1.2E-08 71.2 10.2 30 197-226 339-368 (544)
477 KOG3347 Predicted nucleotide k 97.5 8.6E-05 1.9E-09 63.3 3.2 32 202-233 7-38 (176)
478 PRK10789 putative multidrug tr 97.5 0.00065 1.4E-08 71.2 10.6 29 198-226 337-365 (569)
479 TIGR03522 GldA_ABC_ATP gliding 97.5 0.00047 1E-08 66.4 8.8 47 257-318 147-193 (301)
480 PLN02200 adenylate kinase fami 97.5 0.00027 5.8E-09 65.7 6.8 41 199-241 40-80 (234)
481 TIGR02538 type_IV_pilB type IV 97.5 0.00086 1.9E-08 70.2 11.2 94 164-271 292-395 (564)
482 COG1134 TagH ABC-type polysacc 97.5 0.00074 1.6E-08 62.3 9.4 107 198-318 49-208 (249)
483 cd03264 ABC_drug_resistance_li 97.5 0.00096 2.1E-08 60.5 10.3 48 257-319 144-191 (211)
484 PRK09302 circadian clock prote 97.5 0.0013 2.9E-08 68.0 12.6 129 198-337 27-200 (509)
485 cd00227 CPT Chloramphenicol (C 97.5 0.0001 2.2E-09 65.1 3.8 37 202-238 2-38 (175)
486 PRK13640 cbiO cobalt transport 97.5 0.00064 1.4E-08 64.9 9.5 50 258-320 158-207 (282)
487 PRK13948 shikimate kinase; Pro 97.5 0.00025 5.3E-09 63.3 6.2 35 200-234 8-42 (182)
488 PRK10247 putative ABC transpor 97.5 0.0009 1.9E-08 61.5 10.1 29 197-225 28-56 (225)
489 TIGR01192 chvA glucan exporter 97.5 0.00066 1.4E-08 71.4 10.4 30 197-226 356-385 (585)
490 PRK10895 lipopolysaccharide AB 97.5 0.00075 1.6E-08 62.6 9.7 30 197-226 24-53 (241)
491 COG1102 Cmk Cytidylate kinase 97.5 0.00017 3.7E-09 62.3 4.8 28 205-232 3-30 (179)
492 COG4987 CydC ABC-type transpor 97.5 0.0013 2.8E-08 66.8 11.7 29 198-226 360-388 (573)
493 PRK13900 type IV secretion sys 97.4 0.00016 3.5E-09 70.6 5.2 72 200-271 158-245 (332)
494 PRK14532 adenylate kinase; Pro 97.4 0.0001 2.2E-09 65.8 3.5 36 204-241 2-37 (188)
495 PF00448 SRP54: SRP54-type pro 97.4 0.00069 1.5E-08 61.2 8.9 107 202-321 1-131 (196)
496 cd03248 ABCC_TAP TAP, the Tran 97.4 0.00038 8.3E-09 63.9 7.4 29 198-226 36-64 (226)
497 cd03245 ABCC_bacteriocin_expor 97.4 0.00036 7.8E-09 63.8 7.1 46 258-318 155-200 (220)
498 cd03267 ABC_NatA_like Similar 97.4 0.001 2.2E-08 61.7 10.3 49 258-319 168-216 (236)
499 TIGR03410 urea_trans_UrtE urea 97.4 0.0011 2.3E-08 61.0 10.3 48 259-319 147-194 (230)
500 cd01130 VirB11-like_ATPase Typ 97.4 0.00019 4.1E-09 64.1 5.1 72 200-271 23-110 (186)
No 1
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-91 Score=630.14 Aligned_cols=367 Identities=85% Similarity=1.339 Sum_probs=362.1
Q ss_pred cccCCCCCCChhhHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceee
Q 017161 10 KDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVA 89 (376)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (376)
+++++..+|+|.+++.+|.|+.++|+.+|+++|++|+++..+++.+.|+||+|||+|||+.|++..+.+.+++++||+|+
T Consensus 19 ~d~~~~~~l~e~di~~lk~yg~~pya~~ik~~e~di~~l~~ki~~~~gikesdtglapp~~wdl~~dkq~mq~eqplqva 98 (435)
T KOG0729|consen 19 EDDKPINPLDEGDIALLKSYGQGPYAAQIKKVEADIEDLLKKINELTGIKESDTGLAPPALWDLAADKQRMQEEQPLQVA 98 (435)
T ss_pred hhccCCCccchhhHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHhhCccccccCCCChHHHHHhhhHHHhcccCCceeh
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCccc
Q 017161 90 RCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYND 169 (376)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d 169 (376)
+|.++|+.+..+.+|+|+++++++|+|+++..+++.+|++|++|+++++.|+++.+||+++||++++|.++++|+++|.|
T Consensus 99 rctkii~~~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty~d 178 (435)
T KOG0729|consen 99 RCTKIISGNSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSD 178 (435)
T ss_pred eeeeecCCCCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCccccc
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHH
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARM 249 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~ 249 (376)
+||+.++++.|++.++.|+.||+.|..+|+.||+|||+|||||||||++|+|+|+..+++|+++-+++++++|+|++.+.
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarm 258 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 258 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 017161 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329 (376)
Q Consensus 250 ~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gR 329 (376)
+|++|++|+..+.|||||||||++++.|.+++.++++++|++|++|++++|||++++|+.|+++||+|+.|||||+||||
T Consensus 259 vrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgr 338 (435)
T KOG0729|consen 259 VRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGR 338 (435)
T ss_pred HHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 330 fd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+|+.++|.+||.+.|..||++|.+.|++.+++.|+.||++|++.|||
T Consensus 339 ldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstga 385 (435)
T KOG0729|consen 339 LDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGA 385 (435)
T ss_pred cccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcch
Confidence 99999999999999999999999999999999999999999999997
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-85 Score=614.72 Aligned_cols=347 Identities=54% Similarity=0.880 Sum_probs=317.3
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCCCCeEE
Q 017161 26 LKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYV 105 (376)
Q Consensus 26 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (376)
++.+...+|...+.+.+..+.+...++..+......+..+++...|+...+.....+++|++||+|.++++++ +++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~----~~i 88 (406)
T COG1222 13 LESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDG----RAI 88 (406)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCc----eEE
Confidence 3334444555545554444444444433332222222334455678888888888899999999999999875 499
Q ss_pred EeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhh
Q 017161 106 INVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVE 185 (376)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~ 185 (376)
|+.+++++|+|++.+.++...|+||++|++++.+++++..||+..||.++.|.+++.|+++|+||||+++|+++|+++|+
T Consensus 89 Vks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VE 168 (406)
T COG1222 89 VKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVE 168 (406)
T ss_pred EEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEE
Q 017161 186 LPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIV 265 (376)
Q Consensus 186 ~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl 265 (376)
+|++||++|.++|++||+|||||||||||||+||||+|++++++|+++.+|+|+++|+|++.+.+|++|..|+.++||||
T Consensus 169 LPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsII 248 (406)
T COG1222 169 LPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSII 248 (406)
T ss_pred ccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHH
Q 017161 266 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345 (376)
Q Consensus 266 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~ 345 (376)
||||||+++++|.+.+++++.++|++|++||++||||++.++|.||+|||+++.|||||+||||||+.|+||+||.++|.
T Consensus 249 FiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~ 328 (406)
T COG1222 249 FIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRA 328 (406)
T ss_pred EEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 346 QIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 346 ~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+||++|+++|++..++||+.||+.|+|||||
T Consensus 329 ~Il~IHtrkM~l~~dvd~e~la~~~~g~sGA 359 (406)
T COG1222 329 EILKIHTRKMNLADDVDLELLARLTEGFSGA 359 (406)
T ss_pred HHHHHHhhhccCccCcCHHHHHHhcCCCchH
Confidence 9999999999999999999999999999998
No 3
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-71 Score=495.03 Aligned_cols=335 Identities=48% Similarity=0.795 Sum_probs=324.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccc
Q 017161 33 PYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIA 112 (376)
Q Consensus 33 ~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (376)
||.++++++|.++.+.....++|..++.. .+.+++...+..++.+++...||.+.+.+++ ++++|++....
T Consensus 21 y~~~ki~~~~~~v~~kt~nlrrleaqrne-----ln~kvr~lreel~~lqe~gsyvgev~k~m~k----~kVLVKvhpeg 91 (404)
T KOG0728|consen 21 YYLQKIEELQLQVAEKTQNLRRLEAQRNE-----LNAKVRLLREELQLLQEPGSYVGEVVKAMGK----KKVLVKVHPEG 91 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHhcCcchHHHHHHhcCc----ceEEEEEcCCC
Confidence 68899999999999999999999865533 4478889999999999999999999999876 57999999999
Q ss_pred eEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchh
Q 017161 113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPE 192 (376)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~ 192 (376)
+|+|.+...++..++.+|.+|++...+|.+...||.+.||.++.|.+++.|+.+|+-|||++.++++|++.|++|.+||+
T Consensus 92 Kyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPE 171 (404)
T KOG0728|consen 92 KYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 171 (404)
T ss_pred cEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcc
Q 017161 193 KFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272 (376)
Q Consensus 193 ~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~ 272 (376)
+|..+|+..|+|+|||||||||||+||+++|+...+.|+++++++++++|+|++.+.+|++|-+|+.++|||||+||||+
T Consensus 172 LF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeids 251 (404)
T KOG0728|consen 172 LFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 251 (404)
T ss_pred HHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
+++.|.++++++++++|+++++||+++|||....++.||++||+.+.|||||+||||+|+.|+||+|+.+.|.+||++|.
T Consensus 252 igs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 252 IGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHHHCCCCCCC
Q 017161 353 RTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 353 ~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
++|++.+++++..+|..++|.|||
T Consensus 332 rkmnl~rgi~l~kiaekm~gasga 355 (404)
T KOG0728|consen 332 RKMNLTRGINLRKIAEKMPGASGA 355 (404)
T ss_pred hhhchhcccCHHHHHHhCCCCccc
Confidence 999999999999999999999998
No 4
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-67 Score=476.30 Aligned_cols=344 Identities=42% Similarity=0.712 Sum_probs=318.9
Q ss_pred HhCCChhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCC-----C--
Q 017161 28 TYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNS-----E-- 100 (376)
Q Consensus 28 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-- 100 (376)
+.+...+..+++.|.++|+-+++++.++. ++.+ +....+..+.+.++.++..|+.|+.++++++-+. +
T Consensus 19 ~mste~i~~rtrlldnEirI~~sev~ri~--he~~---~~~ekIkeN~EkIk~Nk~LPYLV~NvvE~ld~~~~~~~e~sg 93 (424)
T KOG0652|consen 19 SMSTEEIISRTRLLDNEIRIMKSEVQRIN--HELQ---AMKEKIKENTEKIKVNKQLPYLVSNVVELLDMDPNDDEEDSG 93 (424)
T ss_pred hccHHHHHHHHHHhhhHHHHHHHHHHHhh--hHHH---HHHHHHHhhHHHhhccccCchHHhhHHHHhcCCcccchhccC
Confidence 34555778889999999999999988875 3221 1224588899999999999999999999986211 0
Q ss_pred ----------CCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccc
Q 017161 101 ----------DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDV 170 (376)
Q Consensus 101 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di 170 (376)
.+-++|+.++-..|++.+-..+++..++||+.|++++.+|-+..+||...|..+..|.+++.|...|+||
T Consensus 94 ~n~~ld~qrkgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDi 173 (424)
T KOG0652|consen 94 ANIDLDSQRKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDI 173 (424)
T ss_pred CcccccccccceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCccccccc
Confidence 2335677888888877776779999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHH
Q 017161 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMV 250 (376)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~ 250 (376)
||++.++++|.++|.+|+.|++.|+++|+.||+|+|+|||||||||++|||+|.+.++.|+.+.++.+++.|+|++.+.+
T Consensus 174 GGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLV 253 (424)
T KOG0652|consen 174 GGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLV 253 (424)
T ss_pred ccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCc
Q 017161 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (376)
Q Consensus 251 ~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRf 330 (376)
|+.|..|+..+|+||||||+|+++.+|+++...++.++|++|++||+++|||.+...+.||++||+.+.|||+|+|.||+
T Consensus 254 RDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRL 333 (424)
T KOG0652|consen 254 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRL 333 (424)
T ss_pred HHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 331 DRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 331 d~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|+.|+||.|+.+.|.+|+++|.++|++..+++|++||+.|++|+||
T Consensus 334 DRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGA 379 (424)
T KOG0652|consen 334 DRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGA 379 (424)
T ss_pred cccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCch
Confidence 9999999999999999999999999999999999999999999997
No 5
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-67 Score=478.49 Aligned_cols=341 Identities=43% Similarity=0.712 Sum_probs=308.8
Q ss_pred CCCChhhHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeec
Q 017161 16 RPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKII 95 (376)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (376)
.|...|.+.+||- ++|+..-.-.++.-...+++.+..+. .+....+.......|+.||++.++|
T Consensus 53 ~p~~~C~lrlLk~-------~RIkDyLLMEEEFI~NQe~~k~~e~~---------~ee~r~~vd~lRGtPmsvg~leEii 116 (440)
T KOG0726|consen 53 TPHTQCKLKLLKL-------ERIKDYLLMEEEFIRNQERLKPQEEK---------QEEERSKVDDLRGTPMSVGTLEEII 116 (440)
T ss_pred ccchhHHHHHHHH-------HHHHHHHHHHHHHHhhccccCCchhh---------hHHHHhHHHhhcCCccccccHHHHh
Confidence 4667777777773 34444333333333334444433222 2223234444478999999999999
Q ss_pred CCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHH
Q 017161 96 SPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKE 175 (376)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~ 175 (376)
++++ ++|+.+.+..|+|++.++++...++||+.|-+++...+++..|...+||.++.|.+++.|..+|.||||++.
T Consensus 117 dd~h----aivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~ 192 (440)
T KOG0726|consen 117 DDNH----AIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLES 192 (440)
T ss_pred cCCc----eEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcccccHHH
Confidence 9865 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHH
Q 017161 176 QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQ 255 (376)
Q Consensus 176 ~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~ 255 (376)
++++|++.+++|+.||++|+.+|++||+||+|||+||||||+||+|+|++..++|+++.+++++++|.|++.+.+|++|+
T Consensus 193 QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~ 272 (440)
T KOG0726|consen 193 QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFR 272 (440)
T ss_pred HHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEE
Q 017161 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVE 335 (376)
Q Consensus 256 ~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~ 335 (376)
.|..++|||+||||||+++.+|++.++++..++|+++++||+++|||++++.|.||++||+.+.|||||+||||+|+.|+
T Consensus 273 vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIe 352 (440)
T KOG0726|consen 273 VAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352 (440)
T ss_pred HHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 336 FGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 336 ~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|+.||...++.||.+|+..|.+..+|+++.+...-+.+|||
T Consensus 353 f~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGA 393 (440)
T KOG0726|consen 353 FPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGA 393 (440)
T ss_pred cCCCchhhhceeEEEeecccchhccccHHHHhhcccccccc
Confidence 99999999999999999999999999999999999999997
No 6
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-65 Score=460.51 Aligned_cols=327 Identities=42% Similarity=0.716 Sum_probs=309.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccce
Q 017161 34 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAK 113 (376)
Q Consensus 34 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (376)
+.++++-++.+...++++.+.|+ +|- ....++..+ .++.|+.+|++.+.++.+ ..+|...++++
T Consensus 37 le~~le~l~vqe~yik~e~~~lk--re~---------~~aqeevkr-iqsvplvigqfle~vdqn----t~ivgsttgsn 100 (408)
T KOG0727|consen 37 LERELELLEVQEDYIKDEQRNLK--REL---------LHAQEEVKR-IQSVPLVIGQFLEAVDQN----TAIVGSTTGSN 100 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHH-HhccchHHHHHHHhhhcc----CceeecccCCc
Confidence 46778888888888888888887 443 333444444 479999999999998875 48999999999
Q ss_pred EEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhh
Q 017161 114 FVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEK 193 (376)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~ 193 (376)
|+|++-+.++.+.++|+++|++++.+-.+...||+..|++++++...++|+++|.||||++-+++++++++++|+.|.++
T Consensus 101 y~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~l 180 (408)
T KOG0727|consen 101 YYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADL 180 (408)
T ss_pred eEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCccc
Q 017161 194 FVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAI 273 (376)
Q Consensus 194 ~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l 273 (376)
|+++|+.||+|||+|||||||||+||+|+|+...+.|+++.+++++++|.|++.+.+|++|..|+.++|+||||||||++
T Consensus 181 y~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 181 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred HHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 017161 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
+.+|.+.+++.+.++|+.|++||++||||+...|+.||++||+.+.|||+|+||||+|+.|+||+||..+++-+|...+.
T Consensus 261 atkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tits 340 (408)
T KOG0727|consen 261 ATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITS 340 (408)
T ss_pred hhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHHHCCCCCCC
Q 017161 354 TMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 354 ~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+|++.+++|++.+..+.+..|||
T Consensus 341 km~ls~~vdle~~v~rpdkis~a 363 (408)
T KOG0727|consen 341 KMNLSDEVDLEDLVARPDKISGA 363 (408)
T ss_pred cccCCcccCHHHHhcCccccchh
Confidence 99999999999999998888886
No 7
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.3e-55 Score=434.59 Aligned_cols=326 Identities=42% Similarity=0.715 Sum_probs=301.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceE
Q 017161 35 STSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKF 114 (376)
Q Consensus 35 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (376)
..+++.++.+++.+..+.+++. ++. .++..+..++ +.+|+.||++.++++++ +++|+.+.+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~ 91 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLK--REL---------IRAKEEVKRI-QSVPLVIGQFLEMIDSN----YGIVSSTSGSNY 91 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHH-hCCCceEEEEEEEEcCC----EEEEEcCCCCEE
Confidence 4566777777777777777766 222 2234444444 78999999999999864 699999999999
Q ss_pred EEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhh
Q 017161 115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKF 194 (376)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~ 194 (376)
+|++.+.++...+++|++|+++..++.+...+|...++.+..|.+++.|+++|+||||++.++++|++++.+|+.+|+.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~ 171 (398)
T PTZ00454 92 YVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELY 171 (398)
T ss_pred EEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccc
Q 017161 195 VKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIG 274 (376)
Q Consensus 195 ~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~ 274 (376)
..+|+.+|+++|||||||||||++|+++|++++.+|+.+.++++..+|.|++...++++|..|+..+|+||||||+|.++
T Consensus 172 ~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~ 251 (398)
T PTZ00454 172 EQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIA 251 (398)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 275 GARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
.+|.+..++.+.+.++.+.+++++++++....+++||+|||+++.+||+++||||||+.|+|++|+.++|..||+.++.+
T Consensus 252 ~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 252 TKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred cccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 98877777778889999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHCCCCCCC
Q 017161 355 MNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 355 ~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+++..++++..+|..|+|||||
T Consensus 332 ~~l~~dvd~~~la~~t~g~sga 353 (398)
T PTZ00454 332 MNLSEEVDLEDFVSRPEKISAA 353 (398)
T ss_pred CCCCcccCHHHHHHHcCCCCHH
Confidence 9999999999999999999996
No 8
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.1e-53 Score=425.49 Aligned_cols=300 Identities=46% Similarity=0.777 Sum_probs=285.7
Q ss_pred hhhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCC
Q 017161 73 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152 (376)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~ 152 (376)
...++....++.|+.||++.++++++ +++|+++.+.+|+|++.+.++...++||++|+++..+..+...+|...|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~ 167 (438)
T PTZ00361 92 AELKKVDDLRGSPLSVGTLEEIIDEN----HAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDP 167 (438)
T ss_pred HHHHHHHHhhCCCcEEEEEEEEeCCC----eEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccch
Confidence 34444455578999999999999864 69999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 153 SVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 153 ~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
.+..|.+++.|+.+|+||+|+++++++|++++.+|+.+|++|..+|+.+|+++|||||||||||++|+++|++++.+|+.
T Consensus 168 ~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 168 LVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred hhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 017161 233 VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (376)
Q Consensus 233 v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~ 312 (376)
+.++++.++|.|++...++.+|..|..+.|+||||||||+++.+|.+..++++.+.+++++++|++++++....++.||+
T Consensus 248 V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ 327 (438)
T PTZ00361 248 VVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIM 327 (438)
T ss_pred EecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEE
Confidence 99999999999999999999999999999999999999999999887777788899999999999999998888999999
Q ss_pred EeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 313 tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|||+++.+|++++||||||+.|+|+.||.++|.+||+.++.++.+..+++++.+|..|+|||||
T Consensus 328 ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgA 391 (438)
T PTZ00361 328 ATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGA 391 (438)
T ss_pred ecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHH
Confidence 9999999999999999999999999999999999999999999998999999999999999996
No 9
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-54 Score=396.73 Aligned_cols=290 Identities=45% Similarity=0.796 Sum_probs=278.3
Q ss_pred hcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCccccccccc
Q 017161 82 EEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEE 161 (376)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (376)
++....++.+.+.+++ .+++|+.+.+..|+|+....++.++|..|.+|+++-....+...||..+| .+..|..+.
T Consensus 51 qsvg~~~gevlk~l~~----~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~ 125 (388)
T KOG0651|consen 51 QSVGQIIGEVLKQLED----EKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHED 125 (388)
T ss_pred hhcCchhHHHHhhccc----cceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhcC
Confidence 4555567777777665 46999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
..+++|+.++|+-+++.++++.|++|+.+|++|.+.|+++|++++||||||+|||++|+++|..+++.|+.+..+++.++
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 242 ~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
|+|++.+.+|+.|..|+.+.|||||+||||++++.|....+..+.++|++|++|+++|+||+..++|.+|+|||+|+.||
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD 285 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence 99999999999999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 322 ~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|+|+||||+|+.+++|+|+...|..|++.|...+.....+|++.+.++++||.||
T Consensus 286 paLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~ga 340 (388)
T KOG0651|consen 286 PALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGA 340 (388)
T ss_pred hhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChH
Confidence 9999999999999999999999999999999999988899999999999999996
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-53 Score=422.14 Aligned_cols=225 Identities=46% Similarity=0.815 Sum_probs=214.0
Q ss_pred CCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC
Q 017161 149 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA 228 (376)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~ 228 (376)
.+.|+.......+.|+++|+||||+++++++|++.|.+|++||+.|.++|+.||+|||||||||||||++||++|++.+.
T Consensus 415 ~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 415 GIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred cCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 34566666667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCe
Q 017161 229 CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (376)
Q Consensus 229 ~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 308 (376)
+|+.+.+++++++|+|++++.++++|+.|+..+||||||||||+++..|++..+ .-..+.+.+||++|||+....+|
T Consensus 495 nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcE
Confidence 999999999999999999999999999999999999999999999999974332 55678899999999999999999
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 309 ~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+||++||+|+.||+||+||||||+.|++++||.+.|.+||+.+++++++.+++|+++||..|+|||||
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGA 639 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 11
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.8e-51 Score=404.20 Aligned_cols=327 Identities=46% Similarity=0.795 Sum_probs=299.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccce
Q 017161 34 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAK 113 (376)
Q Consensus 34 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (376)
+..++++++.+++.+..+.+.+. ...+....+......+|+.+|++.+.++++ +++|....+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~v~~~~g~~ 76 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLE------------RELERLKSELEKLKSPPLIVATVLEVLDDG----RVVVKSSGGPQ 76 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhCCCceEEEEEEEeCCC----eEEEEECCCCE
Confidence 35677777777777777777666 223344444454567999999999999874 48888888999
Q ss_pred EEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhh
Q 017161 114 FVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEK 193 (376)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~ 193 (376)
|+++....+....+++|.+|.++...+.+...+|...++.+..+.+.+.|+++|+||+|+++++++|++++..|+.+|+.
T Consensus 77 ~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~ 156 (389)
T PRK03992 77 FLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPEL 156 (389)
T ss_pred EEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCccc
Q 017161 194 FVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAI 273 (376)
Q Consensus 194 ~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l 273 (376)
|..+|+.+|+++|||||||||||++|+++|++++.+|+.++++++...|.|++...++.+|..|+...|+||||||+|.+
T Consensus 157 ~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l 236 (389)
T PRK03992 157 FEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAI 236 (389)
T ss_pred HHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 017161 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
++.|.+...+++.++++.+.+++.+++++...+++.||+|||+++.+|++++||||||+.|+|++|+.++|.+||+.+++
T Consensus 237 ~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 237 AAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred hcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 99887766667888999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHHHCCCCCCC
Q 017161 354 TMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 354 ~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
++.+..++++..||..|+||+||
T Consensus 317 ~~~~~~~~~~~~la~~t~g~sga 339 (389)
T PRK03992 317 KMNLADDVDLEELAELTEGASGA 339 (389)
T ss_pred cCCCCCcCCHHHHHHHcCCCCHH
Confidence 99998889999999999999986
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-51 Score=408.61 Aligned_cols=225 Identities=44% Similarity=0.748 Sum_probs=214.6
Q ss_pred CCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC
Q 017161 149 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA 228 (376)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~ 228 (376)
.+.|+..+..+...|+++|+||||++++..+|..+|.+|.++|++|+.+|+..|.|||||||||||||+||||+|++.+.
T Consensus 492 ~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 492 KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence 34577778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCe
Q 017161 229 CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (376)
Q Consensus 229 ~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 308 (376)
+|+.|.+++|+++|+|++++.+|.+|+.|+.++||||||||+|++.+.|++.. .....+.+.+||.+|||...+.+|
T Consensus 572 NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV 648 (802)
T KOG0733|consen 572 NFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGV 648 (802)
T ss_pred ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999999999997654 556679999999999999999999
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc--cCCCCCcccHHHHHHHCC--CCCCC
Q 017161 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR--TMNCERDIRFELLARLCP--NSTGN 376 (376)
Q Consensus 309 ~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~--~~~~~~~vdl~~lA~~t~--g~sGa 376 (376)
.||+|||+|+.+|||++||||||..+++++|+.++|..||+.+++ +..+..+|||++||+.+. |||||
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGA 720 (802)
T KOG0733|consen 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGA 720 (802)
T ss_pred EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchh
Confidence 999999999999999999999999999999999999999999999 777889999999999766 99998
No 13
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=9.8e-49 Score=385.87 Aligned_cols=326 Identities=48% Similarity=0.822 Sum_probs=301.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceE
Q 017161 35 STSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKF 114 (376)
Q Consensus 35 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (376)
..++++++.+++.+..+.+.+. + ......+.....+..|+.+|++.+.+++. ++++..+.+.+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 68 (364)
T TIGR01242 5 DVRIRKLEDEKRSLEKEKIRLE--R----------ELERLRSEIERLRSPPLIVGTVLEVLDDN----RVVVKSSTGPNF 68 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--H----------HHHHHHHHHHHHhCCCeEEEEEEEEecCC----EEEEEeCCCCEE
Confidence 4678888888888888888776 2 23344455555678999999999999863 588999999999
Q ss_pred EEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhh
Q 017161 115 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKF 194 (376)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~ 194 (376)
++++...++...+++|++|.++...+.+...+|...++.+..+.+.+.|.++|+||+|+++++++|++++..|+.+++.|
T Consensus 69 ~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~ 148 (364)
T TIGR01242 69 VVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELF 148 (364)
T ss_pred EEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccc
Q 017161 195 VKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIG 274 (376)
Q Consensus 195 ~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~ 274 (376)
..+|+.+|+++|||||||||||++|+++|++++.+|+.+.++++...+.|++...++.+|..++...|+||||||+|.++
T Consensus 149 ~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~ 228 (364)
T TIGR01242 149 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIA 228 (364)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 275 GARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
..+.+...+++.+.++.+.+++.+++++...+++.||+|||+++.+|++++||||||+.|+|+.|+.++|.+||+.+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 229 AKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK 308 (364)
T ss_pred cccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence 88877666778889999999999999988788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHCCCCCCC
Q 017161 355 MNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 355 ~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+.+..++++..||+.|+||+||
T Consensus 309 ~~l~~~~~~~~la~~t~g~sg~ 330 (364)
T TIGR01242 309 MKLAEDVDLEAIAKMTEGASGA 330 (364)
T ss_pred CCCCccCCHHHHHHHcCCCCHH
Confidence 9988889999999999999985
No 14
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-47 Score=384.74 Aligned_cols=217 Identities=42% Similarity=0.760 Sum_probs=203.2
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
...+.|+++|+||||++++|.+|.+.|.+|++||++|.+ |+++..|||||||||||||++|||+|.++...|+.|.++|
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE 740 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 740 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH
Confidence 345789999999999999999999999999999999977 8999999999999999999999999999999999999999
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC--CCCCeEEEEEeC
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--ARGNIKVLMATN 315 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--~~~~v~VI~tTn 315 (376)
++++|+|+++..+|++|+.|+..+||||||||+|+++++|+.++.+|. -+.+...|||.++||+. +...|+||+|||
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDVFVIGATN 819 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc-cHHHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence 999999999999999999999999999999999999999976544332 35688999999999997 566899999999
Q ss_pred CCCCCCccccCCCCcceEEEecCC-CHHHHHHHHHHHhccCCCCCcccHHHHHHHCC-CCCCC
Q 017161 316 RPDTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTRTMNCERDIRFELLARLCP-NSTGN 376 (376)
Q Consensus 316 ~~~~ld~allr~gRfd~~i~~~~P-d~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~-g~sGa 376 (376)
||+.|||+|+||||||..+++.++ |.+.+..+|+..++++.++.+||+.+||+.|+ +||||
T Consensus 820 RPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGA 882 (953)
T KOG0736|consen 820 RPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGA 882 (953)
T ss_pred CccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchh
Confidence 999999999999999999999988 67899999999999999999999999999987 89997
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-47 Score=372.86 Aligned_cols=212 Identities=43% Similarity=0.733 Sum_probs=202.7
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
...+++|+|+-|+++++++|.++|++ +++|+.|.++|=+-|+||||.||||||||+||||+|.+.+.||+...++++-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34578999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 241 ~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
.|+|.+.+.+|++|..|+.++||||||||||+++++|.... .....+++.|||.+||||..+.+++||++||.|+.|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 99999999999999999999999999999999999985432 226789999999999999999999999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 321 d~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|+||.||||||+.|.+|.||...|.+||+.|+.++.+..+||+..||+-|+||+||
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGA 508 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGA 508 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999998
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-46 Score=372.59 Aligned_cols=210 Identities=38% Similarity=0.695 Sum_probs=196.7
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhh
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~ 242 (376)
++++|.||||++..+.+|.+.+.. ++||+.|.++|+.||+|||||||||||||+||+|+|++++.+|+.++++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 478999999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC----CCeEEEEEeCCCC
Q 017161 243 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR----GNIKVLMATNRPD 318 (376)
Q Consensus 243 ~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~----~~v~VI~tTn~~~ 318 (376)
.|++++.+|++|..|+..+|||+||||||+++++|...+ ..--++...+||+.||++... ..|+||+|||+|+
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq---reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ---REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHH---HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999985421 222345667999999987544 5699999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 319 ~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
.|||+|+|+||||+.|.+..|+..+|.+||+..++++.++.++|+..||++|+||.||
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGA 398 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGA 398 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccch
Confidence 9999999999999999999999999999999999999999999999999999999998
No 17
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-44 Score=371.53 Aligned_cols=216 Identities=44% Similarity=0.785 Sum_probs=206.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
+....++|.|+.|+++++++|+|+|.+ |++|+.|.++|.+.|+|+||+||||||||+||||+|.+.+.||+.+++++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 455669999999999999999999986 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFD-DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 240 ~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
..++|.+...++++|..|+.++|||||+||||+++..|+. ...+++.+...+|.|||.+||||....+|+|+++||+++
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 9999999999999999999999999999999999999953 344678888999999999999999999999999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCCC
Q 017161 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGN 376 (376)
Q Consensus 319 ~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~sGa 376 (376)
.||+||+||||||+.|.++.|+..+|.+||+.|+++.+++ .+++|..||.+|+||+||
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~ga 520 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGA 520 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHH
Confidence 9999999999999999999999999999999999999996 789999999999999997
No 18
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-43 Score=349.84 Aligned_cols=214 Identities=40% Similarity=0.680 Sum_probs=205.6
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
.+.....|+||||+.++++.|++.+++|-++|.+|.+.+++.+.|+|||||||||||+||.++|..++..|+.|.+++++
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 34455899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 240 ~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
++|+|.++..+|++|..|+..+|||+||||+|+++++|+.+++|... +...|||.+|||.....+|.|+++|.||+.
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTD---RVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTD---RVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchH---HHHHHHHHhhccccccceEEEEEecCCccc
Confidence 99999999999999999999999999999999999999888777654 777899999999999999999999999999
Q ss_pred CCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 320 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 320 ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+||||+||||+|+.++.++|+..+|.+||+.....+..+.++|++.+|.+|+|||||
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchh
Confidence 999999999999999999999999999999999999999999999999999999998
No 19
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=7.7e-42 Score=344.84 Aligned_cols=248 Identities=40% Similarity=0.643 Sum_probs=204.5
Q ss_pred CeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHH
Q 017161 102 AKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMR 181 (376)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~ 181 (376)
++++|....+.++++.+...+....+++|.++.++..+......+|. ..+..+..++.|+++|+||+|+++++++++
T Consensus 119 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~p~v~~~dIgGl~~~i~~i~ 195 (512)
T TIGR03689 119 GRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPK---AEVEDLVLEEVPDVTYADIGGLDSQIEQIR 195 (512)
T ss_pred CeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCH---hHHhcceeecCCCCCHHHcCChHHHHHHHH
Confidence 35555555566666666666666666666666665544433333332 224556678899999999999999999999
Q ss_pred HHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc----------eEEEechhhhHhhhchhhHHHH
Q 017161 182 EVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------FIRVIGSELVQKYVGEGARMVR 251 (376)
Q Consensus 182 ~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~----------~i~v~~~el~~~~~g~~~~~~~ 251 (376)
+.+.+|+.+|++|..+|+++|+++|||||||||||++|+++|++++.+ |+.+.++++..+|.|++++.++
T Consensus 196 ~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir 275 (512)
T TIGR03689 196 DAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIR 275 (512)
T ss_pred HHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHH
Confidence 999999999999999999999999999999999999999999987543 6778888999999999999999
Q ss_pred HHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCC
Q 017161 252 ELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRP 327 (376)
Q Consensus 252 ~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~ 327 (376)
.+|+.++. +.|+||||||+|+++..|+.+.+ +....+.+.+|++.++++...++++||+|||+++.|||+++||
T Consensus 276 ~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRp 353 (512)
T TIGR03689 276 LIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRP 353 (512)
T ss_pred HHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCc
Confidence 99999876 37999999999999988754221 2222455679999999998888999999999999999999999
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 328 GRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 328 gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
||||+.|+|+.|+.++|.+||+.++..
T Consensus 354 GRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 354 GRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999999864
No 20
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-43 Score=354.06 Aligned_cols=217 Identities=43% Similarity=0.779 Sum_probs=209.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
.+....++|.|+.|++++++++.+.|.. +++|..|..+|.+.|+|+||+||||||||+|||++|.+.+.||+.++++++
T Consensus 141 ~~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~F 219 (596)
T COG0465 141 LEDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 219 (596)
T ss_pred cccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhh
Confidence 3446789999999999999999999975 999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 239 ~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+..|+|.+...+|++|..|++++||||||||||+++.+|+.+..+++.+..+++.|+|.+||||..+..|+||++||+|+
T Consensus 220 VemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpd 299 (596)
T COG0465 220 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPD 299 (596)
T ss_pred hhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999999987777788999999999999999999888999999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 319 ~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
.+||||+||||||+.|.++.||...|.+|++.|+++..++.++|+..+|+.|+||+||
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGA 357 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGA 357 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999998
No 21
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-43 Score=332.27 Aligned_cols=214 Identities=37% Similarity=0.598 Sum_probs=200.4
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
.+...|.+.|+||.|+.++++-|+++|.+|+..|+.|+.+ ..|-+|||++||||||||+||||+|.+++.+|+.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 3457889999999999999999999999999999999874 478899999999999999999999999999999999999
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-CC---eEEEEE
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR-GN---IKVLMA 313 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~---v~VI~t 313 (376)
+.++|-|++++.+|-+|++|+.++|++|||||||+|+++|+.. +.++...+.-.+||.+|||.... .+ |+|+++
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 9999999999999999999999999999999999999999543 56777778888999999998543 23 899999
Q ss_pred eCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 314 Tn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
||.||.||.||+| ||...|++|+|+.++|..++++.++...+..+++++.||..++|||||
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGa 419 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGA 419 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChH
Confidence 9999999999999 999999999999999999999999999999999999999999999997
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-43 Score=321.70 Aligned_cols=216 Identities=37% Similarity=0.642 Sum_probs=197.4
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
....+.++|++.|+||.|++.+++.|+++|.+|++.|.+|.. +-.|.+++||||||||||++||+|+|.+.+.+|+.|+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 344577899999999999999999999999999999999976 3467899999999999999999999999999999999
Q ss_pred chhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC-CCCeEEEEE
Q 017161 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMA 313 (376)
Q Consensus 235 ~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~v~VI~t 313 (376)
.++|+++|+|++++.++++|++|+.++||||||||||.+++.|.++ .+....+.--++|-+|+|... ..+++|+++
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgA 275 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGA 275 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEec
Confidence 9999999999999999999999999999999999999999988654 345556667799999999865 457999999
Q ss_pred eCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCCC
Q 017161 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGN 376 (376)
Q Consensus 314 Tn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~sGa 376 (376)
||-|+.||.|++| ||+..|++|+|+...|..+|+.|+...... .+-|+.+|+++|+|||||
T Consensus 276 TNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 276 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred CCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcC
Confidence 9999999999999 999999999999999999999999876644 567999999999999997
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.7e-40 Score=299.31 Aligned_cols=209 Identities=37% Similarity=0.615 Sum_probs=194.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
+..++++++|++|++++++..+-.+++ +.+|+.|..| .|++||+|||||||||++|+++|++++.+++.+.+.++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 567889999999999999998877776 8999999887 489999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 240 ~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
..++|++.+.++++|+.|+..+|||+||||+|+++-.|....- .-++......||.+|||+..+.+|+.|++||+++.
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQel--RGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~ 266 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL--RGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL 266 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh--cccHHHHHHHHHHhccCcccCCceEEEeecCChhh
Confidence 9999999999999999999999999999999999887754322 23466788899999999999999999999999999
Q ss_pred CCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 320 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 320 ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|||++++ ||...|+|.+|+.++|.+|++.++++++++-+.++..+|..|.||||.
T Consensus 267 LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgR 321 (368)
T COG1223 267 LDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGR 321 (368)
T ss_pred cCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCch
Confidence 9999999 999999999999999999999999999999899999999999999983
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2e-39 Score=345.62 Aligned_cols=217 Identities=48% Similarity=0.808 Sum_probs=203.8
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
...+.|.++|++|+|++.+++.|++.+.+|+.+++.|.++|+.+|+++|||||||||||++|+++|++++.+|+.+.+++
T Consensus 443 ~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~ 522 (733)
T TIGR01243 443 VLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPE 522 (733)
T ss_pred hhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+.++|+|++++.++.+|..|+...||||||||+|++++.|+... ......+.+.+|+.+++++....+++||+|||++
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~ 600 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRP 600 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999999885432 2234567888999999999888899999999999
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 318 ~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+.||++++||||||+.+++++|+.++|.+||+.+++++++..+++++.||+.|+|||||
T Consensus 601 ~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sga 659 (733)
T TIGR01243 601 DILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGA 659 (733)
T ss_pred hhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999996
No 25
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=308.14 Aligned_cols=210 Identities=38% Similarity=0.662 Sum_probs=193.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcC-CCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG-IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
.-.++|+||+|++.+++.+++.|.+|+.+|++|..-+ +.+++|+|||||||||||++|+|+|.+.++.|+.|.++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 3457899999999999999999999999999997544 578999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--eEEEEEeCCCC
Q 017161 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN--IKVLMATNRPD 318 (376)
Q Consensus 241 ~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~--v~VI~tTn~~~ 318 (376)
+|+|++++.++.+|..|..-+||||||||+|.+.+.|. ++.++.....=.+++...||+.++.+ |+|++|||+|.
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF 242 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc
Confidence 99999999999999999999999999999999999882 23344444445699999999987765 99999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 319 ~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
.||.|++| |+.+.+++++|+.++|.+||+..+++-++++++|+.++|++|+||||.
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGS 298 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGS 298 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHH
Confidence 99999999 999999999999999999999999999999999999999999999984
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-39 Score=330.28 Aligned_cols=214 Identities=48% Similarity=0.794 Sum_probs=201.4
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
...+.++|++++|++.+++.+++.+..|+.+++.|...++.+++++|||||||||||+||+++|++++.+|+.+.+++++
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 240 ~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
++|+|++++.++.+|..|+..+||||||||+|++++.|+... +....+.+.+++.++++.....+|+||+|||+++.
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ 390 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEecCCCccc
Confidence 999999999999999999999999999999999999986543 22236888999999999999999999999999999
Q ss_pred CCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCC--CCcccHHHHHHHCCCCCCC
Q 017161 320 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC--ERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 320 ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~--~~~vdl~~lA~~t~g~sGa 376 (376)
+|++++||||||+.++|++||..+|.+||+.+++.... ..++++..+|+.|+||+||
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sga 449 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGA 449 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999996654 4789999999999999996
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=7e-38 Score=320.18 Aligned_cols=218 Identities=45% Similarity=0.800 Sum_probs=204.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
..++.|.++|+||+|++++++++++++.. +.+++.|..+|..+|+++|||||||||||++|+++|++++.+|+.+++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 34557889999999999999999999886 89999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+...+.|.+...++.+|..|+..+||||||||||.++..+.....+.+.+..+.+.+++.+++++....+++||+|||++
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~ 203 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 203 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCCh
Confidence 99999999999999999999999999999999999998886654555677788999999999999888899999999999
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 318 ~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+.|||+++||||||+.++++.|+.++|.+||+.+++...+..++++..+|+.|.||+||
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sga 262 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGA 262 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999998887889999999999999986
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.2e-36 Score=305.41 Aligned_cols=208 Identities=26% Similarity=0.445 Sum_probs=181.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
.++.+|++|+|++.+++.+++.... .+..+..+|+++|+|+|||||||||||++|+++|++++.+|+.++++.+.++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 4678899999999999999876643 2344577899999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 242 ~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
++|+++..++.+|..|+..+||||||||||.++..+... +......+.+..++..++. ...+++||+|||+++.||
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 999999999999999999999999999999998754322 1233445666677777763 356799999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC--CcccHHHHHHHCCCCCCC
Q 017161 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE--RDIRFELLARLCPNSTGN 376 (376)
Q Consensus 322 ~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~--~~vdl~~lA~~t~g~sGa 376 (376)
++++|+||||+.++++.|+.++|.+||+.|+++.... .+.+++.||+.|+|||||
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGA 431 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHH
Confidence 9999999999999999999999999999999887543 478999999999999997
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.9e-36 Score=314.52 Aligned_cols=215 Identities=44% Similarity=0.776 Sum_probs=202.2
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
..+.++|+||+|++++++++.+.+.. +.+++.|..+|...|+++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34578999999999999999998876 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 241 ~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
.+.|.+...++.+|..|+...||||||||+|.++..|+....+.+.+.++++.+||.+++++....+++||+|||+++.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 99998888999999999999999999999999998887666666788889999999999999888899999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 321 d~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|++++||||||+.+.+++|+.++|.+||+.+++...+..++++..+|+.|+||+||
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sga 390 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGA 390 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999998878889999999999999986
No 30
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=4.1e-35 Score=280.60 Aligned_cols=207 Identities=19% Similarity=0.202 Sum_probs=166.5
Q ss_pred CCCCcccc-cCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 163 PDVTYNDV-GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 163 ~~~~~~di-~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
...+|+++ +|+--...-+.+++...-+ ......|+++|.+++||||||||||++|+++|++++.+|+.++++++.++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 34567777 6665555444444432111 12233689999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHc-----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCC------------CC
Q 017161 242 YVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------------DA 304 (376)
Q Consensus 242 ~~g~~~~~~~~lf~~a~~-----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~------------~~ 304 (376)
|+|++++.+|++|..|+. .+||||||||||++++.|.+. +.....+....+||+.+|+. ..
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~ 265 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEE 265 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCcccccccccccccc
Confidence 999999999999999975 579999999999999988532 22222333345777777652 34
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCC----CCCC
Q 017161 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPN----STGN 376 (376)
Q Consensus 305 ~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g----~sGa 376 (376)
..+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++.+++ .+++..|+..++| |+||
T Consensus 266 ~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GA 338 (413)
T PLN00020 266 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGA 338 (413)
T ss_pred CCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhH
Confidence 567999999999999999999999999964 6899999999999999999886 5789999999987 6665
No 31
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-35 Score=292.95 Aligned_cols=208 Identities=43% Similarity=0.730 Sum_probs=196.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhh
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~ 242 (376)
++++ ++++|+..++..+++.+.+|+.+|..|..+|+++|+++|+|||||||||.+++++|++.++.++.++++++++++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6667 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHcCC-CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 243 VGEGARMVRELFQMARSKK-ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 243 ~g~~~~~~~~lf~~a~~~~-psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
.|+++..+|..|+.|...+ |++|||||+|+++++|.... .-..+...+++..+++....++++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~----~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD----DVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc----hHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 99999999999999885432 134567778888899888889999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 322 ~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
++++| ||||+.+++..|+..+|.+|++.+++++++..++++..+|..|.||+||
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGa 388 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGA 388 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHH
Confidence 99999 9999999999999999999999999999999889999999999999997
No 32
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-35 Score=307.49 Aligned_cols=214 Identities=40% Similarity=0.679 Sum_probs=192.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCceEEEe
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVI 234 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~v~ 234 (376)
.-...++|++|||++.++.+|++.|-.|+.+|+.|.++++.||+|+|+|||||||||+.|+++|..+ ...|+.-.
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 3455789999999999999999999999999999999999999999999999999999999999977 45677788
Q ss_pred chhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 017161 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (376)
Q Consensus 235 ~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT 314 (376)
+.+..++|+|+.++.++.+|+.|+...|+|||+||||-+++.|+......+.. ....||..|+|+..++.|+||+||
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~S---IvSTLLaLmdGldsRgqVvvigAT 413 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHAS---IVSTLLALMDGLDSRGQVVVIGAT 413 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhh---HHHHHHHhccCCCCCCceEEEccc
Confidence 89999999999999999999999999999999999999999986544333443 344566668888899999999999
Q ss_pred CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCCC
Q 017161 315 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGN 376 (376)
Q Consensus 315 n~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~sGa 376 (376)
|+++.+||||+||||||+.++|++|+.+.|.+|+.+|.+++.-. ...-+..||..|.||.||
T Consensus 414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~ga 476 (1080)
T KOG0732|consen 414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGA 476 (1080)
T ss_pred CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchH
Confidence 99999999999999999999999999999999999999998733 234578999999999997
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=5.2e-34 Score=298.85 Aligned_cols=215 Identities=46% Similarity=0.798 Sum_probs=201.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
.....+|+++.|.+..++++.+.+.. +.++..|..++...+++++|+||||||||++++++|++++.+|+.++++++..
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 34556899999999999999999987 67888888899999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 241 ~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
.+.|.+...++.+|..++..+||||||||+|+++..|.....+++.+..+++.++|.+++++....+++||+|||+++.|
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~l 303 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 303 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhc
Confidence 99999999999999999999999999999999999887655566777888999999999999888899999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 321 d~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|++++||||||+.+.|++|+.++|.+||+.|++...+..++++..+|+.|+|||||
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sga 359 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGA 359 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHH
Confidence 99999999999999999999999999999999999998899999999999999996
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-35 Score=286.41 Aligned_cols=214 Identities=39% Similarity=0.628 Sum_probs=187.3
Q ss_pred ccCCCCCccc--ccCcHHHHHHH-HHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC-ceEEEec
Q 017161 160 EEKPDVTYND--VGGCKEQIEKM-REVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-CFIRVIG 235 (376)
Q Consensus 160 ~~~~~~~~~d--i~G~~~~~~~l-~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~-~~i~v~~ 235 (376)
-..|+..|++ |||++.....| +++...-..-|+..+++|++..+|+|||||||||||++||.+..-+++ .--.|++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3467888886 78999777655 667777788899999999999999999999999999999999998865 3456899
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHc--------CCCeEEEEcCCcccccCCCCCC--CCCCHHHHHHHHHHHHHhcCCCCC
Q 017161 236 SELVQKYVGEGARMVRELFQMARS--------KKACIVFFDEVDAIGGARFDDG--VGGDNEVQRTMLEIVNQLDGFDAR 305 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~--------~~psIl~iDEiD~l~~~r~~~~--~~~~~~~~~~l~~ll~~ld~~~~~ 305 (376)
++++++|+|+++..+|.+|..|.. ..--||+|||||+++.+|++.. ++.+ .....|||..|||.+..
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVh---D~VVNQLLsKmDGVeqL 367 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVH---DTVVNQLLSKMDGVEQL 367 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCcc---HHHHHHHHHhcccHHhh
Confidence 999999999999999999999853 1123999999999999997543 2333 35677899999999999
Q ss_pred CCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC----CCCcccHHHHHHHCCCCCCC
Q 017161 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 306 ~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~----~~~~vdl~~lA~~t~g~sGa 376 (376)
.|++||+.|||.+.+|.||+|||||...+++.+||+..|.+||++|+++|. +..+||+.+||.+|.+||||
T Consensus 368 NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGA 442 (744)
T KOG0741|consen 368 NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGA 442 (744)
T ss_pred hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchh
Confidence 999999999999999999999999999999999999999999999998764 45789999999999999998
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.9e-33 Score=297.41 Aligned_cols=212 Identities=49% Similarity=0.834 Sum_probs=194.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
.+.++|+||+|++++++.|++++.+|+.+|++|.++|+.+++++|||||||||||++|+++|++++.+|+.++++++..+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 242 ~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
+.|+....++.+|+.+....|+||||||+|.++++|.......+ .+...+|+..++++...+.++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~---~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVE---KRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHH---HHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 99999999999999999999999999999999988754322222 344556667777777778899999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 322 ~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
++++|+|||++.++++.|+.++|.+||+.+.+.+.+..+++++.+|..|+||+||
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHH
Confidence 9999999999999999999999999999999999988889999999999999985
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=4.5e-33 Score=304.38 Aligned_cols=178 Identities=20% Similarity=0.343 Sum_probs=151.5
Q ss_pred chhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhh---------------------------
Q 017161 190 HPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY--------------------------- 242 (376)
Q Consensus 190 ~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~--------------------------- 242 (376)
.+....++|+.+|+||||+||||||||+||||+|+++++||+.+++++++.++
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 34566789999999999999999999999999999999999999999998654
Q ss_pred --------------hchhhH--HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC---
Q 017161 243 --------------VGEGAR--MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--- 303 (376)
Q Consensus 243 --------------~g~~~~--~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--- 303 (376)
++.+.+ .++.+|+.|+..+||||||||||+++... ....++.+|+++|+|..
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~~ 1768 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCERC 1768 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccccC
Confidence 122222 38899999999999999999999997642 11234778889998763
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHH--hccCCCCCc-ccHHHHHHHCCCCCCC
Q 017161 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH--TRTMNCERD-IRFELLARLCPNSTGN 376 (376)
Q Consensus 304 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~--~~~~~~~~~-vdl~~lA~~t~g~sGa 376 (376)
...+|+||||||+|+.|||||+||||||+.|.++.|+..+|.+++.++ .+++.+..+ +|++.+|+.|+||+||
T Consensus 1769 s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 456899999999999999999999999999999999999999999865 455666543 6899999999999997
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-33 Score=272.49 Aligned_cols=215 Identities=35% Similarity=0.613 Sum_probs=193.9
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEec
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~ 235 (376)
....+..+++.|+|+.|++.+++.+.+++.+|+..|++|..+. .+++++||.||||+|||+|++|+|.++++.|+.+++
T Consensus 141 ~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSa 219 (428)
T KOG0740|consen 141 NEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISA 219 (428)
T ss_pred HHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccH
Confidence 3345677889999999999999999999999999999998765 567899999999999999999999999999999999
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC--CCCeEEEEE
Q 017161 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA--RGNIKVLMA 313 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~VI~t 313 (376)
+.+.++|+|+++..++.+|..|+..+|+||||||+|.++.+|.+. .++...+...+++.++++... .++|+||+|
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~---e~e~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN---EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc---ccccchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 999999999999999999999999999999999999999999543 345556778888888887643 457999999
Q ss_pred eCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHCCCCCCC
Q 017161 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-CERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 314 Tn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~-~~~~vdl~~lA~~t~g~sGa 376 (376)
||+|+.+|.+++| ||...+++|+|+.+.|..+|+..+...+ ...+.|++.||+.|+||+|.
T Consensus 297 TN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgs 358 (428)
T KOG0740|consen 297 TNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGS 358 (428)
T ss_pred CCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccc
Confidence 9999999999999 9999999999999999999999998763 33567999999999999984
No 38
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-23 Score=205.32 Aligned_cols=200 Identities=23% Similarity=0.309 Sum_probs=161.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
-..+.+|+.++-..+.+++|.+-+..+++.++.|.+.|....+|.|||||||||||+++.|+|+.++..++-+..++..
T Consensus 194 f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~- 272 (457)
T KOG0743|consen 194 FPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK- 272 (457)
T ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-
Confidence 3445899999999999999999999999999999999999999999999999999999999999999988888776652
Q ss_pred hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCC--CC--HHHHHHHHHHHHHhcCCCCCC--CeEEEEEe
Q 017161 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG--GD--NEVQRTMLEIVNQLDGFDARG--NIKVLMAT 314 (376)
Q Consensus 241 ~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~--~~--~~~~~~l~~ll~~ld~~~~~~--~v~VI~tT 314 (376)
.... ++.++..+... |||+|+|||+-+.-+...... .. ....-+|.-||+-+||+.+.. -.+||+||
T Consensus 273 ----~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 273 ----LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred ----CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEec
Confidence 2233 67776665544 799999999987654332211 11 123467889999999997765 68899999
Q ss_pred CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHC
Q 017161 315 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLC 370 (376)
Q Consensus 315 n~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t 370 (376)
|.++.|||||+||||+|.+|+++.-+..+-+.+++.++.--. +..-+.+|.+..
T Consensus 346 Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~ 399 (457)
T KOG0743|consen 346 NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLI 399 (457)
T ss_pred CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHh
Confidence 999999999999999999999999999999999999986532 122344554433
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.89 E-value=1.1e-22 Score=170.56 Aligned_cols=130 Identities=39% Similarity=0.693 Sum_probs=112.7
Q ss_pred eeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCC-CeEEEEcCCcccccCCCCCCCC
Q 017161 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKK-ACIVFFDEVDAIGGARFDDGVG 283 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~-psIl~iDEiD~l~~~r~~~~~~ 283 (376)
+||+||||||||++|+.+|+.++.+++.++++++...+.++..+.++.+|..+.... |+||||||+|.+++.. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999998889999999999999998887 9999999999998876 122
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCCCccccCCCCcceEEEecC
Q 017161 284 GDNEVQRTMLEIVNQLDGFDAR-GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (376)
Q Consensus 284 ~~~~~~~~l~~ll~~ld~~~~~-~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~ 338 (376)
........+..|+..++..... .+++||+|||.++.++++++| +||+..+++++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3455556666777777766554 569999999999999999998 89999999874
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=4.4e-21 Score=182.98 Aligned_cols=176 Identities=24% Similarity=0.348 Sum_probs=139.4
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCC---ceeeecCCCChHHHHHHHHHHhc-------CCceEEEechh
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK---GVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSE 237 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~---~vLL~GppGtGKT~LakalA~~l-------~~~~i~v~~~e 237 (376)
++++|+++++++|++++.+ +..+..+.+.|+.++. +++|+||||||||++|+++|..+ ..+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999877 5556778888886653 58999999999999999999865 23689999999
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+...++|++....+.+|..+.. +||||||++.+...+.. .....+.+..|+.+++. ...+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMEN-----QRDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcH
Confidence 9999999888778888887643 59999999998654321 12235556666665542 24668888887642
Q ss_pred -----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC
Q 017161 318 -----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN 356 (376)
Q Consensus 318 -----~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~ 356 (376)
..++|+|++ ||+..|.|+.++.+++.+|+..++....
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 245799999 9999999999999999999999997654
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=9.3e-21 Score=178.68 Aligned_cols=177 Identities=21% Similarity=0.325 Sum_probs=133.8
Q ss_pred cccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCC---CceeeecCCCChHHHHHHHHHHhc-------CCceEEEech
Q 017161 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPP---KGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGS 236 (376)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~---~~vLL~GppGtGKT~LakalA~~l-------~~~~i~v~~~ 236 (376)
+++++|++++|++|++++..+..+ ......|+.++ .+++|+||||||||++|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998775444 33345666543 468999999999999999999864 3478889999
Q ss_pred hhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 237 el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
++...++|+....++++|..+. ++||||||+|.+.... ........+..++..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999888899998875 3599999999985311 1111223344455555532 455666666543
Q ss_pred C-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCC
Q 017161 317 P-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC 357 (376)
Q Consensus 317 ~-----~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~ 357 (376)
. ..++|+|++ ||+..+.|+.++.+++.+|++.++...+.
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~ 196 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREY 196 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 2 247889999 99999999999999999999999976543
No 42
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.1e-21 Score=183.31 Aligned_cols=187 Identities=26% Similarity=0.377 Sum_probs=154.0
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcC-CCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEec
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG-IDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIG 235 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~ 235 (376)
-|+.++--...++++..++...+...+.-.... +...+-+|||||||||||+|+||+|..+ ....+.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 477888888899999888865443332222111 2445679999999999999999999986 345789999
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHc-----CCCeEEEEcCCcccccCCCC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCeE
Q 017161 236 SELVQKYVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFD-DGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~-----~~psIl~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 309 (376)
..++++|++++.+.+..+|+.... +.--.++|||+++++..|.. .+.....+.-++...+|.|+|.+....||+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 999999999999999999988754 22346779999999988843 334456678899999999999999999999
Q ss_pred EEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 310 VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
+++|+|-.+.+|.|+.. |-|-..++.+|+...|.+|++..+..
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999987743
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=3e-20 Score=168.02 Aligned_cols=185 Identities=23% Similarity=0.308 Sum_probs=126.9
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
+..++.+++|++|++..+..++-++... ...-.+..++|||||||+||||||+.+|++++.+|...+++.+-
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa--------~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAA--------KKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHH--------HCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHH--------HhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 4567779999999999999988777641 11123456899999999999999999999999999988876541
Q ss_pred HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc-----CCCC--------CC
Q 017161 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GFDA--------RG 306 (376)
Q Consensus 240 ~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld-----~~~~--------~~ 306 (376)
. ...+..++... ....||||||||.+ +..+|..|+..++... |-.. ..
T Consensus 88 k------~~dl~~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 K------AGDLAAILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred h------HHHHHHHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 12223333333 34569999999999 7888999988887432 1111 13
Q ss_pred CeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 017161 307 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 307 ~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~ 373 (376)
+..+|+||++...|.+.|+. ||.....+..++.++..+|++...+.+++. .+....+||+++.|-
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 58899999999999999999 999999999999999999999988888876 333567899988874
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=1.1e-20 Score=180.21 Aligned_cols=175 Identities=22% Similarity=0.338 Sum_probs=140.4
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCC---CCceeeecCCCChHHHHHHHHHHhcC-------CceEEEechhh
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---PKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRVIGSEL 238 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~---~~~vLL~GppGtGKT~LakalA~~l~-------~~~i~v~~~el 238 (376)
+++|+++++++|++++.+ +..+..+.+.|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 599999999999999987 67788888899875 34899999999999999999998652 37999999999
Q ss_pred hHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-
Q 017161 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP- 317 (376)
Q Consensus 239 ~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~- 317 (376)
...+.|.+...++.+|..+.. ++|||||++.+.+.+.+ .....+.+..|+++++. ...+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----QRDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc--cchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcHH
Confidence 999999888888888888754 59999999998643311 11234555566555542 34678888887643
Q ss_pred -C---CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC
Q 017161 318 -D---TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN 356 (376)
Q Consensus 318 -~---~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~ 356 (376)
+ .++|+|++ ||+..|.|+.++.+++..|++.++++..
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 2 35899999 9999999999999999999999998754
No 45
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.7e-20 Score=175.78 Aligned_cols=201 Identities=23% Similarity=0.355 Sum_probs=147.0
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhh
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~ 242 (376)
+.-.+++|+-.......|++..... .+ .+..-.+-+++++|||||||||++|+-+|...|..+-.+.+.++.- .
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aT-aN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-l 423 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIAT-AN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-L 423 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHh-cc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-c
Confidence 3344777777666666666554321 00 1111234468999999999999999999999999988887766522 1
Q ss_pred hchhhHHHHHHHHHHHcC-CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 243 VGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 243 ~g~~~~~~~~lf~~a~~~-~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
-.+....+..+|+.+... ..-+|||||.|+++..|. .+..+......|..||-.-. +....++++.+||+|..+|
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn--ktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN--KTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc--hhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchh
Confidence 223456788999999764 345899999999999883 34456666667777664321 3455688899999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-----------------------c----ccHHHHHHHCCCCC
Q 017161 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-----------------------D----IRFELLARLCPNST 374 (376)
Q Consensus 322 ~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~-----------------------~----vdl~~lA~~t~g~s 374 (376)
.++-. |||..++||+|..++|..+|..|+.++-+.+ . --+.+.|+.|+|||
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99999 9999999999999999999999886532110 0 11467899999999
Q ss_pred C
Q 017161 375 G 375 (376)
Q Consensus 375 G 375 (376)
|
T Consensus 578 G 578 (630)
T KOG0742|consen 578 G 578 (630)
T ss_pred H
Confidence 8
No 46
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=187.76 Aligned_cols=270 Identities=21% Similarity=0.336 Sum_probs=182.7
Q ss_pred hhHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCC
Q 017161 21 DDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSE 100 (376)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (376)
|++++..+.... .+..+.+++.++..++.++..+. +++| +.+ -..........+ -.+....+.+..
T Consensus 387 DeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~--~e~~-~~~----k~~~~~~~~~~~---~~~~~~~~~~~~--- 452 (786)
T COG0542 387 DEAGARVRLEID-KPEELDELERELAQLEIEKEALE--REQD-EKE----KKLIDEIIKLKE---GRIPELEKELEA--- 452 (786)
T ss_pred HHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHh--hhhh-HHH----HHHHHHHHHHhh---hhhhhHHHHHhh---
Confidence 678888888887 89999999999999999999998 6553 000 001111111110 000000000000
Q ss_pred CCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHH
Q 017161 101 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKM 180 (376)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l 180 (376)
. |....++. +|+....++...+..+++..+....-.+ -.-|+|+++++..+
T Consensus 453 --~--v~~~~Ia~-vv~~~TgIPv~~l~~~e~~kll~le~~L------------------------~~rViGQd~AV~av 503 (786)
T COG0542 453 --E--VDEDDIAE-VVARWTGIPVAKLLEDEKEKLLNLERRL------------------------KKRVIGQDEAVEAV 503 (786)
T ss_pred --c--cCHHHHHH-HHHHHHCCChhhhchhhHHHHHHHHHHH------------------------hcceeChHHHHHHH
Confidence 0 22233333 3444444444444433332221111111 12399999999999
Q ss_pred HHHhhcccCchhhhHhcCCCCC----CceeeecCCCChHHHHHHHHHHhcC---CceEEEechhhhHhh-----hchhhH
Q 017161 181 REVVELPMLHPEKFVKLGIDPP----KGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQKY-----VGEGAR 248 (376)
Q Consensus 181 ~~~i~~~l~~~~~~~~~g~~~~----~~vLL~GppGtGKT~LakalA~~l~---~~~i~v~~~el~~~~-----~g~~~~ 248 (376)
.++|.. .+.|+..| .++||.||+|+|||-||+++|..+. ..++++++|+++.++ +|.+..
T Consensus 504 s~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPG 575 (786)
T COG0542 504 SDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPG 575 (786)
T ss_pred HHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCC
Confidence 999987 66676543 4688999999999999999999985 899999999997753 454444
Q ss_pred HH-----HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCC------CeEEEEEeCCC
Q 017161 249 MV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG------NIKVLMATNRP 317 (376)
Q Consensus 249 ~~-----~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~------~v~VI~tTn~~ 317 (376)
++ ..+.+..+.+++|||+||||++. ++++.+.|+|.|+.-.-.+..+ |++||+|||--
T Consensus 576 YVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~G 644 (786)
T COG0542 576 YVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAG 644 (786)
T ss_pred CceeccccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccc
Confidence 43 34666777888999999999998 9999999999998644333333 68999999941
Q ss_pred ----------------------------CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 318 ----------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 318 ----------------------------~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
..+.|+|++ |+|.+|.|.+.+.+...+|+...+..
T Consensus 645 s~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 645 SEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred hHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 134577788 99999999999999999999887753
No 47
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.79 E-value=1.3e-18 Score=185.72 Aligned_cols=189 Identities=23% Similarity=0.342 Sum_probs=149.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCce
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 230 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~~ 230 (376)
...+-.+++++|.++.+..+.+.+.. ....+++|+||||||||++|+++|..+ +..+
T Consensus 175 ~~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~ 241 (731)
T TIGR02639 175 KAKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKI 241 (731)
T ss_pred HHhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeE
Confidence 34566888999999999988877754 345689999999999999999999986 6778
Q ss_pred EEEechhhh--HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCe
Q 017161 231 IRVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (376)
Q Consensus 231 i~v~~~el~--~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 308 (376)
+.+++..+. .+|.|+.+..++.+|+.+....++||||||+|.+.+.+.. .+++.+.++.|...+. ++.+
T Consensus 242 ~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~~~~~~~~~L~~~l~-------~g~i 312 (731)
T TIGR02639 242 YSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SGGSMDASNLLKPALS-------SGKL 312 (731)
T ss_pred EEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CCccHHHHHHHHHHHh-------CCCe
Confidence 999988887 4788999999999999998888999999999999875422 2233445555554432 5789
Q ss_pred EEEEEeCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC----CCC-CcccHHHHHHHCCCCC
Q 017161 309 KVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLARLCPNST 374 (376)
Q Consensus 309 ~VI~tTn~~-----~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~----~~~-~~vdl~~lA~~t~g~s 374 (376)
.+|++||.. ..+|++|.| ||. .|.++.|+.+++.+||+.....+ ++. .+..+..++.++..|-
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 999999963 357999999 995 79999999999999999766442 221 3445677888777764
No 48
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-18 Score=175.91 Aligned_cols=175 Identities=20% Similarity=0.256 Sum_probs=140.4
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIG 274 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~ 274 (376)
+..+.++||+||+|||||.|+++++.++ -+.+..++|+.+.........+.++.+|..|.+++|+||+||++|.++
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 3456789999999999999999999986 456778999999887777888899999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcC-C-CCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 275 GARFDDGVGGDNEVQRTMLEIVNQLDG-F-DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~ld~-~-~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
+.. +..++.+......+..+++++-. + ..+..+.||++.+....++|.|.+|++|+.++.++.|+..+|.+||+..+
T Consensus 508 ~~s-~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 508 SAS-SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIF 586 (952)
T ss_pred ccC-cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHH
Confidence 832 22233344555556666655422 2 23345789999999999999999999999999999999999999999988
Q ss_pred ccCCCC-CcccHHHHHHHCCCCC
Q 017161 353 RTMNCE-RDIRFELLARLCPNST 374 (376)
Q Consensus 353 ~~~~~~-~~vdl~~lA~~t~g~s 374 (376)
.+.... ..-|++.+|..|+||.
T Consensus 587 s~~~~~~~~~dLd~ls~~TEGy~ 609 (952)
T KOG0735|consen 587 SKNLSDITMDDLDFLSVKTEGYL 609 (952)
T ss_pred HhhhhhhhhHHHHHHHHhcCCcc
Confidence 765522 1224555999999996
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.79 E-value=3.5e-18 Score=166.37 Aligned_cols=187 Identities=20% Similarity=0.263 Sum_probs=137.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
..+..+.+|++++|+++.++.+..++... ...-.++.+++||||||||||++|+++|++++..+..++++.+
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~--------~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~ 87 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAA--------KKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHH--------HhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc
Confidence 34566779999999999999999888641 1112456789999999999999999999999988877766543
Q ss_pred hHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc-------CCC------CC
Q 017161 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-------GFD------AR 305 (376)
Q Consensus 239 ~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld-------~~~------~~ 305 (376)
. ....+..++... ..+++|||||||.+ ....+..+..+++... +.. ..
T Consensus 88 ~------~~~~l~~~l~~l--~~~~vl~IDEi~~l-----------~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 88 E------KPGDLAAILTNL--EEGDVLFIDEIHRL-----------SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred c------ChHHHHHHHHhc--ccCCEEEEecHhhc-----------chHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 1 112233344332 35679999999998 3334455555554321 000 11
Q ss_pred CCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCC
Q 017161 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNST 374 (376)
Q Consensus 306 ~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~s 374 (376)
..+.+|++||++..++++|++ ||...+.|+.|+.+++.+|++......++. ++..+..|++.|.|..
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p 216 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP 216 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc
Confidence 347789999999999999998 999999999999999999999988776654 2334788999998863
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.78 E-value=2.1e-18 Score=166.06 Aligned_cols=172 Identities=30% Similarity=0.443 Sum_probs=131.1
Q ss_pred ccCCCCCcccccCcHHHHH---HHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEech
Q 017161 160 EEKPDVTYNDVGGCKEQIE---KMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~---~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~ 236 (376)
..-++.++++++|++..+. -|+.+|+. ....+++|||||||||||||+.+|..++..|..+++.
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 3446779999999988763 55666654 3445799999999999999999999999999999874
Q ss_pred hhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 017161 237 ELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (376)
Q Consensus 237 el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~ 312 (376)
. .+.+.++.+++.|+. +...|||+|||+.+ +...|..++-.++ ++.+++|+
T Consensus 83 ~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE-------~G~iilIG 137 (436)
T COG2256 83 T-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVE-------NGTIILIG 137 (436)
T ss_pred c-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhhhhhhhhhc-------CCeEEEEe
Confidence 3 355678888888854 23479999999999 5666777776654 56788888
Q ss_pred Ee--CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh--ccCCCC------CcccHHHHHHHCCC
Q 017161 313 AT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT--RTMNCE------RDIRFELLARLCPN 372 (376)
Q Consensus 313 tT--n~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~--~~~~~~------~~vdl~~lA~~t~g 372 (376)
|| |..-.+++||++ |+ +++++.+.+.++..++++..+ ...++. ++..++.|+..+.|
T Consensus 138 ATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 138 ATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred ccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 76 455789999999 77 789999999999999998843 222222 23346677777776
No 51
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2e-18 Score=176.28 Aligned_cols=196 Identities=21% Similarity=0.316 Sum_probs=159.7
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhH
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGAR 248 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~ 248 (376)
..-+.+..+..+..++. |-+.|. ..++.....+||+|+||||||++++++|.+++.+++.++|.+++....+..+.
T Consensus 402 ~~~~~~~~~~~l~~vl~-p~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~et 477 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLS-PQKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTET 477 (953)
T ss_pred CCccchHHHHHHHHHhC-cccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHH
Confidence 34555555555554443 222222 12333445799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCccccCC
Q 017161 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-DARGNIKVLMATNRPDTLDPALLRP 327 (376)
Q Consensus 249 ~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~-~~~~~v~VI~tTn~~~~ld~allr~ 327 (376)
.+..+|..|+.+.|+||||-++|.++..+.. +.+-..+..+..++. .+-+ .+...++||++|+..+.+++.+++
T Consensus 478 kl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~- 552 (953)
T KOG0736|consen 478 KLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS- 552 (953)
T ss_pred HHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH-
Confidence 9999999999999999999999999854422 445555555555555 2333 356789999999999999999999
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCC
Q 017161 328 GRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNST 374 (376)
Q Consensus 328 gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~s 374 (376)
.|-+.|.++.|+.++|.+||++++....+..++.+..+|++|.||+
T Consensus 553 -~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 553 -LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFS 598 (953)
T ss_pred -hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCC
Confidence 8888999999999999999999999999999999999999999997
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.77 E-value=7.6e-18 Score=162.10 Aligned_cols=180 Identities=19% Similarity=0.251 Sum_probs=130.3
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhch
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGE 245 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~ 245 (376)
+|++++|+++.++.|+.++..... .-..+.+++||||||||||++|+++|++++..+..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 689999999999999998864211 1234567999999999999999999999988876665543211
Q ss_pred hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcC-------C------CCCCCeEEEE
Q 017161 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG-------F------DARGNIKVLM 312 (376)
Q Consensus 246 ~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~-------~------~~~~~v~VI~ 312 (376)
...+...+... ..+.+|||||++.+ ....+..+..+++.... . .....+.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l-----------~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhh-----------CHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11122222222 34579999999998 34455556555543220 0 0123478899
Q ss_pred EeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCC
Q 017161 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNST 374 (376)
Q Consensus 313 tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~s 374 (376)
+||++..+++++++ ||...+.+++|+.+++.++++..+...+.. .+..++.|++.+.|+.
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 99999999999999 998899999999999999999888755443 2334678999988864
No 53
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.8e-18 Score=173.08 Aligned_cols=186 Identities=47% Similarity=0.746 Sum_probs=166.4
Q ss_pred cccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEE
Q 017161 186 LPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIV 265 (376)
Q Consensus 186 ~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl 265 (376)
.|+.+++.|..+++.++++++++||||||||++++++|.. +..+..+++++...++.|.....++.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678999999999999999999999999999999999999 776788999999999999999999999999999999999
Q ss_pred EEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHH
Q 017161 266 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345 (376)
Q Consensus 266 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~ 345 (376)
++|++|.+.+.+.... .....+...+++..++++. ...+.+++.||++..+++++++||||++.+.+..|+...+.
T Consensus 81 ~~d~~~~~~~~~~~~~---~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSSDQ---GEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccccc---cchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 9999999999886522 2233455556666677766 44488889999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 346 QIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 346 ~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+|+..+.+.+....+.++..+|..+.||+||
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 187 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGA 187 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHH
Confidence 9999999999988889999999999999986
No 54
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.77 E-value=4e-18 Score=182.94 Aligned_cols=167 Identities=25% Similarity=0.370 Sum_probs=127.1
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh--------
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-------- 239 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~-------- 239 (376)
+++.|++++++.|.+++...... +-..+.+++|+||||||||++|+++|+.++.+|+++++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 35899999999999987653211 112334799999999999999999999999999999765432
Q ss_pred -HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHh--cCCC--------CCCCe
Q 017161 240 -QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL--DGFD--------ARGNI 308 (376)
Q Consensus 240 -~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--d~~~--------~~~~v 308 (376)
..|+|.....+.+.|..+....| ||||||||.+.+.. +.+....|+++|+.. ..|. ..+++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-------RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-------CCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24666666777778888766666 89999999997532 112345666666431 1121 12578
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 309 ~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
++|+|||.++.++++|++ || ..|+|+.|+.+++.+|++.++
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 999999999999999999 99 589999999999999998876
No 55
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.76 E-value=7.3e-18 Score=178.76 Aligned_cols=177 Identities=24% Similarity=0.376 Sum_probs=138.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCceE
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFI 231 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~~i 231 (376)
...-.++.++|.++.++++.+++.. ....++||+||||||||++|+++|... +..++
T Consensus 180 a~~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~ 246 (758)
T PRK11034 180 ARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_pred HHcCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE
Confidence 3455677899999999999988865 345678999999999999999999864 55666
Q ss_pred EEechhhh--HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeE
Q 017161 232 RVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (376)
Q Consensus 232 ~v~~~el~--~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 309 (376)
.++...++ .+|.|+.+..++.+|..+....++||||||||.+++.+.. .++..+..+.|..++. .+.+.
T Consensus 247 ~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L~-------~g~i~ 317 (758)
T PRK11034 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLLS-------SGKIR 317 (758)
T ss_pred eccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHHh-------CCCeE
Confidence 66666665 4578888999999999988888899999999999876522 2233444455554443 57899
Q ss_pred EEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccH
Q 017161 310 VLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRF 363 (376)
Q Consensus 310 VI~tTn~~~-----~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl 363 (376)
||++|+..+ ..|++|.| ||+ .|.++.|+.+++..||+.+...+....++++
T Consensus 318 vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i 373 (758)
T PRK11034 318 VIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRY 373 (758)
T ss_pred EEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCc
Confidence 999999864 57999999 995 8999999999999999988776665555543
No 56
>PLN03025 replication factor C subunit; Provisional
Probab=99.75 E-value=1.8e-17 Score=160.73 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=131.6
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC-----CceE
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACFI 231 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~-----~~~i 231 (376)
.|+++++|.++++++|++++++.|+.++.. ....++|||||||||||++|+++|+++. ..++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 478999999999999999999999988764 1223699999999999999999999873 2355
Q ss_pred EEechhhhHhhhchhhHHHHHHHHHH-H------cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 017161 232 RVIGSELVQKYVGEGARMVRELFQMA-R------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (376)
Q Consensus 232 ~v~~~el~~~~~g~~~~~~~~lf~~a-~------~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 304 (376)
.++.++... ...+++..... . ...+.|++|||+|.+ ....++.|...++..
T Consensus 69 eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~----- 126 (319)
T PLN03025 69 ELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIY----- 126 (319)
T ss_pred eeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhcc-----
Confidence 555544311 12333332221 1 134579999999998 566677777776542
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 305 ~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
...+.+|++||....+.++|++ |+ ..+.|+.|+.++...+++..++..++. .+..+..|+..+.|
T Consensus 127 ~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 127 SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3456688899998899999998 77 689999999999999999888765543 33457777777765
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.8e-17 Score=166.10 Aligned_cols=179 Identities=18% Similarity=0.259 Sum_probs=134.8
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------- 229 (376)
+.+++++.+|++++|++.++..|+.++.. + +.+..+||+||+|||||++|+++|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 45678999999999999999999999875 1 234568999999999999999999988653
Q ss_pred ----------------eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 230 ----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
++.+++.. ..+...+|++...+. .+...|+||||+|.+ +.+.+
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~ 138 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSF 138 (484)
T ss_pred CCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHH
Confidence 22222110 112233455444433 345669999999999 56667
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.|+..+++ +..++++|++|+.+..|.+++++ |+ ..+.|..++.++..+.++..+...++. .+..+..||+
T Consensus 139 NALLKtLEE-----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 139 NALLKTLEE-----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK 210 (484)
T ss_pred HHHHHHhhc-----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777666643 45789999999999999999999 88 678999999999999998888766553 3446788888
Q ss_pred HCCCC
Q 017161 369 LCPNS 373 (376)
Q Consensus 369 ~t~g~ 373 (376)
.+.|-
T Consensus 211 ~S~Gd 215 (484)
T PRK14956 211 KGDGS 215 (484)
T ss_pred HcCCh
Confidence 88873
No 58
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.9e-17 Score=152.97 Aligned_cols=183 Identities=20% Similarity=0.272 Sum_probs=142.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
.++..|++.+|+++++++|+=+++. .+..-....++|||||||.||||||..+|++++..+-..+++-+-.
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~A--------Ak~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKA--------AKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHH--------HHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC-
Confidence 4577899999999999999988876 3333456678999999999999999999999999998888776622
Q ss_pred hhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc-------CCCC------CCCe
Q 017161 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-------GFDA------RGNI 308 (376)
Q Consensus 242 ~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld-------~~~~------~~~v 308 (376)
..-+-.++... ...+|+|||||+++ ++.+...|.-.++.+. |... ....
T Consensus 91 -----~gDlaaiLt~L--e~~DVLFIDEIHrl-----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 91 -----PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred -----hhhHHHHHhcC--CcCCeEEEehhhhc-----------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 22233333333 34479999999999 5667777777666432 2211 2357
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 017161 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 309 ~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~ 373 (376)
.+|+||.+...|...|+. ||.....+...+.++..+|+....+.+++. .+....+||+++.|.
T Consensus 153 TLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 153 TLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred eEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 899999999999999999 999999999999999999999999888776 334567888888774
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=99.75 E-value=3.6e-17 Score=167.07 Aligned_cols=185 Identities=28% Similarity=0.369 Sum_probs=136.7
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEec
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~ 235 (376)
++|++++.|.++++|+|++++++.|+.++.... .| .+++++|||||||||||++|+++|++++..++.+++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 478999999999999999999999999997522 12 347889999999999999999999999999999998
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHc------CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeE
Q 017161 236 SELVQKYVGEGARMVRELFQMARS------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~------~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 309 (376)
++.... ..++.+...+.. ..+.||+|||+|.+... .+......+..++. ..+..
T Consensus 73 sd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-------~d~~~~~aL~~~l~-------~~~~~ 132 (482)
T PRK04195 73 SDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-------EDRGGARAILELIK-------KAKQP 132 (482)
T ss_pred cccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-------cchhHHHHHHHHHH-------cCCCC
Confidence 765321 122222222211 25679999999998542 13334455555554 23445
Q ss_pred EEEEeCCCCCCCc-cccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 310 VLMATNRPDTLDP-ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 310 VI~tTn~~~~ld~-allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
+|+++|.+..+.+ .|++ |+ ..+.|+.|+..+...+++..+...++. .+..++.|++.+.|
T Consensus 133 iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 133 IILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred EEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7888999888877 5655 44 789999999999999999988765543 33457788887765
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=3.4e-17 Score=170.01 Aligned_cols=179 Identities=17% Similarity=0.245 Sum_probs=136.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------- 229 (376)
..+++++.+|++|+|++.+++.|+.++.. | +.+..+||+||+|||||++++++|+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC 73 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC 73 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC
Confidence 45678999999999999999999999864 1 345568999999999999999999988642
Q ss_pred ----------------eEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 230 ----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
++.++... ..+...++++++.+.. ....||||||+|.+ +...+
T Consensus 74 G~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~ 136 (830)
T PRK07003 74 GVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAF 136 (830)
T ss_pred cccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHH
Confidence 12222110 1123345666665432 34569999999999 56667
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.|+..|++ ...++.+|++||.+..|.+.|++ || ..+.|..++.++..++|+..+...++. .+..+..|++
T Consensus 137 NALLKtLEE-----PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 137 NAMLKTLEE-----PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred HHHHHHHHh-----cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777765 35688999999999999999999 88 889999999999999999888765543 3345778888
Q ss_pred HCCCC
Q 017161 369 LCPNS 373 (376)
Q Consensus 369 ~t~g~ 373 (376)
.+.|-
T Consensus 209 ~A~Gs 213 (830)
T PRK07003 209 AAQGS 213 (830)
T ss_pred HcCCC
Confidence 88773
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=2.1e-17 Score=169.59 Aligned_cols=179 Identities=17% Similarity=0.243 Sum_probs=134.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------- 229 (376)
..+++++.+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~ 73 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI 73 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence 45678999999999999999999999975 1345678999999999999999999988751
Q ss_pred ---------------------eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCC
Q 017161 230 ---------------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGG 284 (376)
Q Consensus 230 ---------------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~ 284 (376)
++.++... ..+...++++.+.+. .....|+||||+|.+
T Consensus 74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------- 136 (700)
T PRK12323 74 TAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------- 136 (700)
T ss_pred CCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------
Confidence 11221110 112344555555543 345679999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-cccH
Q 017161 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRF 363 (376)
Q Consensus 285 ~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~-~vdl 363 (376)
+...++.|+..|++ ...++++|++||.+..|.+.|++ || ..+.|..++.++..+.|+..+...++.- +..+
T Consensus 137 s~~AaNALLKTLEE-----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL 208 (700)
T PRK12323 137 TNHAFNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNAL 208 (700)
T ss_pred CHHHHHHHHHhhcc-----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHH
Confidence 55666666665553 46788999999999999999999 88 8899999999999999988876555442 2346
Q ss_pred HHHHHHCCCC
Q 017161 364 ELLARLCPNS 373 (376)
Q Consensus 364 ~~lA~~t~g~ 373 (376)
..|++.+.|-
T Consensus 209 ~~IA~~A~Gs 218 (700)
T PRK12323 209 RLLAQAAQGS 218 (700)
T ss_pred HHHHHHcCCC
Confidence 7788888773
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.73 E-value=1.8e-16 Score=154.34 Aligned_cols=185 Identities=20% Similarity=0.311 Sum_probs=133.2
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC-----Cce
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACF 230 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~-----~~~ 230 (376)
++|.+++.+.+|++++|.+.+++.|..++.. ....+++|+||||||||++|+++++++. ..+
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~ 69 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccce
Confidence 4789999999999999999999999998864 1223699999999999999999999873 346
Q ss_pred EEEechhhhHhh-------------hch-------hhHHHHHHHHHHHc-----CCCeEEEEcCCcccccCCCCCCCCCC
Q 017161 231 IRVIGSELVQKY-------------VGE-------GARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGD 285 (376)
Q Consensus 231 i~v~~~el~~~~-------------~g~-------~~~~~~~lf~~a~~-----~~psIl~iDEiD~l~~~r~~~~~~~~ 285 (376)
+.++++++.... .+. ....++.+...... ..+.+|+|||+|.+ .
T Consensus 70 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~ 138 (337)
T PRK12402 70 TEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------R 138 (337)
T ss_pred EEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------C
Confidence 778877654221 111 11223333323222 23459999999988 4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHH
Q 017161 286 NEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFE 364 (376)
Q Consensus 286 ~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~ 364 (376)
...+..+..+++.. ..++.+|++++.+..+.+.|.+ |+ ..+.+.+|+.++...+++..++..++. .+..++
T Consensus 139 ~~~~~~L~~~le~~-----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 139 EDAQQALRRIMEQY-----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHHHHHHHhc-----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 45566676666543 2345567777777778888887 76 678999999999999999988766544 344677
Q ss_pred HHHHHCCC
Q 017161 365 LLARLCPN 372 (376)
Q Consensus 365 ~lA~~t~g 372 (376)
.|++.+.|
T Consensus 211 ~l~~~~~g 218 (337)
T PRK12402 211 LIAYYAGG 218 (337)
T ss_pred HHHHHcCC
Confidence 88887765
No 63
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1e-16 Score=162.29 Aligned_cols=178 Identities=17% Similarity=0.256 Sum_probs=129.3
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC---------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--------- 228 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~--------- 228 (376)
+.++++|.+|++++|++.+++.|+.++.. + +.+.++|||||||||||++|+++|+.+++
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~-----------~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc 71 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKK-----------N-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC 71 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC
Confidence 34678899999999999999999888865 1 34567999999999999999999998764
Q ss_pred ---------------ceEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 229 ---------------CFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 229 ---------------~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
.++.++++. ..+...++.+.+.+.. ....||||||+|.+ ....+
T Consensus 72 ~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a~ 134 (472)
T PRK14962 72 NECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEAF 134 (472)
T ss_pred cccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHHH
Confidence 233333321 1122345555555432 34569999999998 34445
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
..|+..+.. ..+++++|++|+.+..+++++++ |+ ..+.|.+|+.++...+++..+...++. .+..+..|++
T Consensus 135 ~~LLk~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~ 206 (472)
T PRK14962 135 NALLKTLEE-----PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK 206 (472)
T ss_pred HHHHHHHHh-----CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555443 34578888888888899999999 88 689999999999999999888654432 3335778888
Q ss_pred HCCC
Q 017161 369 LCPN 372 (376)
Q Consensus 369 ~t~g 372 (376)
.+.|
T Consensus 207 ~s~G 210 (472)
T PRK14962 207 RASG 210 (472)
T ss_pred HhCC
Confidence 7765
No 64
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=1e-16 Score=172.91 Aligned_cols=189 Identities=20% Similarity=0.269 Sum_probs=143.8
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCce
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 230 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~~ 230 (376)
...+-++++++|.+..++++.+.+.. ....+++|+||||||||++|+.+|..+ +..+
T Consensus 180 ~~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i 246 (852)
T TIGR03345 180 QAREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRL 246 (852)
T ss_pred HhcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeE
Confidence 44567889999999988888776654 334579999999999999999999975 3557
Q ss_pred EEEechhhhH--hhhchhhHHHHHHHHHHHc-CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 017161 231 IRVIGSELVQ--KYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (376)
Q Consensus 231 i~v~~~el~~--~~~g~~~~~~~~lf~~a~~-~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 307 (376)
+.++...+.. .+.|+.+..++.+|..+.. ..++||||||+|.+.+.+... +..+..+.|...+ .++.
T Consensus 247 ~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~n~Lkp~l-------~~G~ 316 (852)
T TIGR03345 247 LSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGDAANLLKPAL-------ARGE 316 (852)
T ss_pred EEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---ccccHHHHhhHHh-------hCCC
Confidence 7777777653 5788999999999998864 567899999999998765321 1222333333333 3678
Q ss_pred eEEEEEeCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCC----C-CcccHHHHHHHCCCCCC
Q 017161 308 IKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC----E-RDIRFELLARLCPNSTG 375 (376)
Q Consensus 308 v~VI~tTn~~-----~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~----~-~~vdl~~lA~~t~g~sG 375 (376)
+.+|+||+.. -.+|++|.| || ..|.++.|+.+++..||+.+.+.+.. . .+..+..++.++.+|-+
T Consensus 317 l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 317 LRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred eEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 9999999864 348999999 99 58999999999999998766654332 1 34567888999988853
No 65
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.71 E-value=9.1e-17 Score=173.64 Aligned_cols=188 Identities=24% Similarity=0.313 Sum_probs=144.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCc
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~ 229 (376)
+...+-.+++++|.+..++.+.+.+.. ....+++|+||||||||++|+++|..+ +.+
T Consensus 170 ~~~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~ 236 (857)
T PRK10865 170 ERAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 236 (857)
T ss_pred HHHhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCE
Confidence 345566788999999988888887765 345679999999999999999999987 678
Q ss_pred eEEEechhhh--HhhhchhhHHHHHHHHHHH-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 017161 230 FIRVIGSELV--QKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (376)
Q Consensus 230 ~i~v~~~el~--~~~~g~~~~~~~~lf~~a~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 306 (376)
++.++...+. .+|.|+.+..++.+|..+. ...++||||||+|.+.+.+.. .+..+.++.|...+ .++
T Consensus 237 ~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d~~~~lkp~l-------~~g 306 (857)
T PRK10865 237 VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPAL-------ARG 306 (857)
T ss_pred EEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchhHHHHhcchh-------hcC
Confidence 8888888876 4578889999999998754 457889999999999876532 22344555554443 367
Q ss_pred CeEEEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-----cccHHHHHHHCCCC
Q 017161 307 NIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-----DIRFELLARLCPNS 373 (376)
Q Consensus 307 ~v~VI~tTn~~~-----~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~-----~vdl~~lA~~t~g~ 373 (376)
.+.+|+||+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+...+.... +..+...+.++.+|
T Consensus 307 ~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 307 ELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred CCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 899999999876 48999999 996 688999999999999988776554332 22344555666655
No 66
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.71 E-value=2.8e-17 Score=177.51 Aligned_cols=165 Identities=25% Similarity=0.384 Sum_probs=123.5
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCC----CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH-
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ- 240 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~- 240 (376)
.|+|++.+++.+..++.. .+.|+. |...+||+||+|||||++|+++|..+ ..++++++++++..
T Consensus 510 ~v~GQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRR--------ARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEK 581 (821)
T ss_pred cCcChHHHHHHHHHHHHH--------HhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccc
Confidence 489999999999999875 333432 22358999999999999999999987 46899999988743
Q ss_pred ----hhhchhhHH-----HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC------CC
Q 017161 241 ----KYVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------AR 305 (376)
Q Consensus 241 ----~~~g~~~~~-----~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------~~ 305 (376)
+.+|....+ .+.+....+.++.+||+|||+|.+ ++++++.|+++++...-.+ +-
T Consensus 582 ~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred ccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEec
Confidence 223322111 234556666777799999999998 8899999999987632111 12
Q ss_pred CCeEEEEEeCCCCC-------------------------------------CCccccCCCCcceEEEecCCCHHHHHHHH
Q 017161 306 GNIKVLMATNRPDT-------------------------------------LDPALLRPGRLDRKVEFGLPDLESRTQIF 348 (376)
Q Consensus 306 ~~v~VI~tTn~~~~-------------------------------------ld~allr~gRfd~~i~~~~Pd~~~r~~Il 348 (376)
.+++||+|||.... +.|+|++ |+|.++.|.+.+.++..+|+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHH
Confidence 57899999985311 2356677 99999999999999999999
Q ss_pred HHHhcc
Q 017161 349 KIHTRT 354 (376)
Q Consensus 349 ~~~~~~ 354 (376)
+..+..
T Consensus 729 ~~~l~~ 734 (821)
T CHL00095 729 EIMLKN 734 (821)
T ss_pred HHHHHH
Confidence 887754
No 67
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.71 E-value=2e-16 Score=153.01 Aligned_cols=165 Identities=22% Similarity=0.326 Sum_probs=123.3
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
..+|.++++|.++++++|.+.+++.++.++.. | ..+..+||+||||+|||++|+++|++++..++.++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~ 75 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVN 75 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEec
Confidence 35789999999999999999999999999863 2 23556777999999999999999999998999998
Q ss_pred chhhhHhhhchhhHHHHHHHHHHH-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 017161 235 GSELVQKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (376)
Q Consensus 235 ~~el~~~~~g~~~~~~~~lf~~a~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~t 313 (376)
+++ . . .......+........ ...+.+|+|||+|.+. ..+.+..+..+++.. ..++.+|++
T Consensus 76 ~~~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt 137 (316)
T PHA02544 76 GSD-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIIT 137 (316)
T ss_pred cCc-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEE
Confidence 876 1 1 1111111222211111 1356799999999872 334556666666543 356788999
Q ss_pred eCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 314 Tn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
||.+..+.+++++ || ..+.|+.|+.+++..+++.++
T Consensus 138 ~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 138 ANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred cCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHH
Confidence 9999999999999 88 578999999999988876543
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.70 E-value=1.4e-16 Score=157.99 Aligned_cols=179 Identities=21% Similarity=0.319 Sum_probs=128.2
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCce---------------
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF--------------- 230 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~--------------- 230 (376)
.|++|+|++.+++.|+.++.....+ +...+.+.+..+||+||+|+|||++|+++|..+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 5889999999999999999874432 2223445678899999999999999999999764431
Q ss_pred --------EEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 017161 231 --------IRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (376)
Q Consensus 231 --------i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (376)
..+.. +- ..-+...+|++++.+.. ....|+||||+|.+ +...++.|+..|++
T Consensus 80 ~~~~hpD~~~i~~-~~----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAP-EG----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecc-cc----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhhc
Confidence 11111 00 01123346777776653 34469999999999 56667777776654
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCC
Q 017161 299 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 375 (376)
Q Consensus 299 ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sG 375 (376)
+..++++|.+|+.++.+.|++++ |+ ..+.|++|+.++..+++... .+++ ......++..+.|..|
T Consensus 144 -----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~ 208 (394)
T PRK07940 144 -----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIG 208 (394)
T ss_pred -----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHH
Confidence 34566677777779999999999 88 79999999999988877632 2333 2345678888888654
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.70 E-value=2.7e-16 Score=157.73 Aligned_cols=173 Identities=30% Similarity=0.437 Sum_probs=129.0
Q ss_pred ccccCCCCCcccccCcHHHHHH---HHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEK---MREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~---l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
+.+..++.++++++|++..+.. |+.++.. ....+++|+||||||||++|+++|+.++..|+.++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3466778899999999999777 8888754 23457999999999999999999999999999998
Q ss_pred chhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEE
Q 017161 235 GSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (376)
Q Consensus 235 ~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~V 310 (376)
+... +...++.++..+. .....||||||+|.+ ....+..|+..++ .+.+++
T Consensus 69 a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le-------~~~iil 123 (413)
T PRK13342 69 AVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVE-------DGTITL 123 (413)
T ss_pred cccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhh-------cCcEEE
Confidence 7543 2233445555543 335679999999998 4556666665553 245667
Q ss_pred EEEeC--CCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC-----CCCCcccHHHHHHHCCC
Q 017161 311 LMATN--RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM-----NCERDIRFELLARLCPN 372 (376)
Q Consensus 311 I~tTn--~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~-----~~~~~vdl~~lA~~t~g 372 (376)
|++|+ ....+++++++ |+ ..+.|++|+.++...+++..+... .+. +..++.|++.+.|
T Consensus 124 I~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G 188 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG 188 (413)
T ss_pred EEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC
Confidence 76653 34578999999 88 789999999999999999877542 232 2346778888766
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.1e-16 Score=162.58 Aligned_cols=177 Identities=17% Similarity=0.224 Sum_probs=134.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc---------
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~--------- 229 (376)
.+++++.+|++|+|++.+++.|+.++.. | +.+..+||+||+|||||++|+++|+.+++.
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~-----------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER-----------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 4678889999999999999999999974 1 345788999999999999999999988652
Q ss_pred ---------------eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHH
Q 017161 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (376)
Q Consensus 230 ---------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (376)
++.++++. ..+...+|++...+. .++..|+||||+|.+ +...++
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~N 136 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFN 136 (702)
T ss_pred cCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHH
Confidence 22222221 112334555555442 245579999999998 566677
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHH
Q 017161 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (376)
Q Consensus 291 ~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~ 369 (376)
.|+..+++ ..+++.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+.+.++. .+..+..||+.
T Consensus 137 ALLKtLEE-----PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 137 ALLKTLEE-----PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHHHHHhc-----CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77776664 34677888899988889899987 88 789999999999999999888766554 33457788888
Q ss_pred CCC
Q 017161 370 CPN 372 (376)
Q Consensus 370 t~g 372 (376)
+.|
T Consensus 209 S~G 211 (702)
T PRK14960 209 AQG 211 (702)
T ss_pred cCC
Confidence 876
No 71
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=2.7e-16 Score=163.37 Aligned_cols=178 Identities=21% Similarity=0.307 Sum_probs=135.1
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc---------
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~--------- 229 (376)
.+++++.+|++|+|++.+++.|+..+.. | +.+..+||+||+|||||++|+++|+.+++.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 4567889999999999999999998875 1 334568999999999999999999988652
Q ss_pred ---------------eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHH
Q 017161 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (376)
Q Consensus 230 ---------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (376)
++.+++.. ..+...+|++...+. .+...|+||||+|.+ +...++
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~N 137 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFN 137 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHH
Confidence 12222211 012233455544432 345569999999999 667788
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHH
Q 017161 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (376)
Q Consensus 291 ~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~ 369 (376)
.|+..|++ +.+++++|++|+.+..|.+.+++ |+ ..+.|..++.++....|+..++..++. .+..+..|++.
T Consensus 138 ALLKtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~ 209 (647)
T PRK07994 138 ALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARA 209 (647)
T ss_pred HHHHHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88777775 46788899999999999999999 87 899999999999999999888655543 33457788888
Q ss_pred CCCC
Q 017161 370 CPNS 373 (376)
Q Consensus 370 t~g~ 373 (376)
+.|-
T Consensus 210 s~Gs 213 (647)
T PRK07994 210 ADGS 213 (647)
T ss_pred cCCC
Confidence 8874
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=3.7e-16 Score=165.05 Aligned_cols=185 Identities=18% Similarity=0.202 Sum_probs=133.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceE-----E
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI-----R 232 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i-----~ 232 (376)
..+++++.+|++|+|++.+++.|+.++.. | +.+..+||+||||||||++|+++|+.+++... +
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~-----------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pC 73 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQ-----------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPC 73 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCC
Confidence 34678889999999999999999998864 1 33556799999999999999999999865310 0
Q ss_pred Eec---hhhhHhh------h----chhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHH
Q 017161 233 VIG---SELVQKY------V----GEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (376)
Q Consensus 233 v~~---~el~~~~------~----g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (376)
..| -.+.... + ..+...+|++...+. .+...|+||||+|.+ +.+.++.|+..
T Consensus 74 g~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKt 142 (944)
T PRK14949 74 GVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKT 142 (944)
T ss_pred CCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHH
Confidence 001 0110000 0 012233555554443 244569999999999 67777877777
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 017161 296 VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 296 l~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~ 373 (376)
|++ +.+++++|++|+.+..|.+.|++ |+ ..+.|..++.++....|+..+...++. .+..+..|++.+.|-
T Consensus 143 LEE-----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd 213 (944)
T PRK14949 143 LEE-----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS 213 (944)
T ss_pred Hhc-----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 764 46678888889999999999999 88 789999999999999998887654433 233577888888873
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=3.4e-16 Score=154.40 Aligned_cols=184 Identities=17% Similarity=0.222 Sum_probs=130.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEE-----
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR----- 232 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~----- 232 (376)
..+++.|.+|++|+|++..++.++.++.. | +.+..+||+||||+|||++|+++|+.+.+....
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc 73 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPC 73 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 45678899999999999999999988864 1 345568999999999999999999987532100
Q ss_pred ---EechhhhHh----------hhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHH
Q 017161 233 ---VIGSELVQK----------YVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (376)
Q Consensus 233 ---v~~~el~~~----------~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (376)
..|.++... ........++.+...+.. ....|++|||+|.+ +...++.++..
T Consensus 74 ~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~naLLk~ 142 (363)
T PRK14961 74 RKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSFNALLKT 142 (363)
T ss_pred CCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHHHHHHHH
Confidence 001111000 000122345566555432 23459999999998 45556666655
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 296 VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 296 l~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
+.. +..++.+|++|+.++.+.+++++ |+ ..+.|++|+.++..++++..++..+.. .+..+..||+.+.|
T Consensus 143 lEe-----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 143 LEE-----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred Hhc-----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 553 35677788888888889999988 87 789999999999999999888766542 33456778888876
No 74
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=2.3e-16 Score=161.39 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=133.8
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------- 229 (376)
..+++++.+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 46788999999999999999999999965 1345578999999999999999999988653
Q ss_pred ----------------eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 230 ----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
++.+++.. ..+...+|++...+. .+...|++|||+|.+ +...+
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~ 136 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSF 136 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHH
Confidence 33333221 122334566555443 244569999999999 56667
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.|+..|++ +..++.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+...++. .+..+..|++
T Consensus 137 naLLk~LEe-----pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 137 NALLKTLEE-----PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HHHHHHHhc-----cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777666664 35678888888989889989998 77 678899999999888888888766654 3345677888
Q ss_pred HCCC
Q 017161 369 LCPN 372 (376)
Q Consensus 369 ~t~g 372 (376)
.+.|
T Consensus 209 ~s~G 212 (509)
T PRK14958 209 AANG 212 (509)
T ss_pred HcCC
Confidence 8776
No 75
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.69 E-value=3.3e-16 Score=169.17 Aligned_cols=188 Identities=27% Similarity=0.369 Sum_probs=146.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCceE
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFI 231 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~~i 231 (376)
...-.++.++|.++.++++.+++.. +...+++|+||||||||++|+++|..+ +..++
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~ 239 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVI 239 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3455688899999999999998865 456689999999999999999999975 46789
Q ss_pred EEechhhh--HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeE
Q 017161 232 RVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (376)
Q Consensus 232 ~v~~~el~--~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 309 (376)
.+++..++ .+|.|+.+..++.+|+.+....++||||||||.+.+.+... ++.+..+.|...+ .++.+.
T Consensus 240 ~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~a~lLkp~l-------~rg~l~ 309 (821)
T CHL00095 240 TLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAIDAANILKPAL-------ARGELQ 309 (821)
T ss_pred EeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---CcccHHHHhHHHH-------hCCCcE
Confidence 99998887 46889999999999999988888999999999998765321 2233444444333 257789
Q ss_pred EEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc----cCCCC-CcccHHHHHHHCCCCCC
Q 017161 310 VLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR----TMNCE-RDIRFELLARLCPNSTG 375 (376)
Q Consensus 310 VI~tTn~~~-----~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~----~~~~~-~~vdl~~lA~~t~g~sG 375 (376)
+|++|+..+ ..|++|.+ ||. .+.++.|+.++...|++.... ..++. .+..+..++.++.+|.+
T Consensus 310 ~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 310 CIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 999999753 57899999 994 689999999999999875432 12221 33457788888888864
No 76
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.69 E-value=4.6e-16 Score=168.63 Aligned_cols=189 Identities=22% Similarity=0.299 Sum_probs=144.8
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCc
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~ 229 (376)
+...+-.++.++|.+..++.+.+.+.. +...+++|+||||||||++++++|..+ +.+
T Consensus 165 ~~~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~ 231 (852)
T TIGR03346 165 ERAREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKR 231 (852)
T ss_pred HHhhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCe
Confidence 345566788999999998888887754 345678999999999999999999975 567
Q ss_pred eEEEechhhh--HhhhchhhHHHHHHHHHHHc-CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 017161 230 FIRVIGSELV--QKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (376)
Q Consensus 230 ~i~v~~~el~--~~~~g~~~~~~~~lf~~a~~-~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 306 (376)
++.++...+. .+|.|+.+..++.+|..+.. ..++||||||+|.+.+.+.. .+..+..+.|... ...+
T Consensus 232 ~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---~~~~d~~~~Lk~~-------l~~g 301 (852)
T TIGR03346 232 LLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---EGAMDAGNMLKPA-------LARG 301 (852)
T ss_pred EEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---cchhHHHHHhchh-------hhcC
Confidence 8888888775 46888889999999998865 46899999999999764422 1223333333322 2467
Q ss_pred CeEEEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc-----ccHHHHHHHCCCCC
Q 017161 307 NIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD-----IRFELLARLCPNST 374 (376)
Q Consensus 307 ~v~VI~tTn~~~-----~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~-----vdl~~lA~~t~g~s 374 (376)
.+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+...+..... ..+..++.++.+|-
T Consensus 302 ~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 302 ELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred ceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 899999999763 57999999 995 6899999999999999988766554333 35667788887774
No 77
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.68 E-value=2.5e-16 Score=146.87 Aligned_cols=183 Identities=18% Similarity=0.232 Sum_probs=133.1
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCce----
Q 017161 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF---- 230 (376)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~---- 230 (376)
...|.+++.+.+|+++.|++.+++.|+.++.. ....++|||||||||||+.|+++|+++..+-
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~ 89 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPC 89 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCcccccc
Confidence 34689999999999999999999999999864 2345799999999999999999999986621
Q ss_pred --EEEechhhhHhhhchhhHHHHHHHHHHHc---------CCC-eEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 017161 231 --IRVIGSELVQKYVGEGARMVRELFQMARS---------KKA-CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (376)
Q Consensus 231 --i~v~~~el~~~~~g~~~~~~~~lf~~a~~---------~~p-sIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (376)
...+.++.....++ ...+. -|..... ++| -|++|||.|.+ ..+.+.+|...++.
T Consensus 90 rvl~lnaSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~ 155 (346)
T KOG0989|consen 90 RVLELNASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED 155 (346)
T ss_pred chhhhcccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc
Confidence 22222222211111 11111 1222221 122 59999999998 67778888777654
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 299 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 299 ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
....+.+|..||..+.|.+.+.+ |+ ..+.|+....+.....|+.++.+-++. .+-.+..||+.++|
T Consensus 156 -----~s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 156 -----FSRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred -----cccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 35678899999999999999998 88 677888888888888888888766655 33357788888876
No 78
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=2.8e-16 Score=166.81 Aligned_cols=164 Identities=21% Similarity=0.321 Sum_probs=124.7
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCC----CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH----
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGI----DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ---- 240 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~---- 240 (376)
.|+|++++++.|.+++... ..|+ +|..++||+||||||||++|+++|..++.+|++++++++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 3899999999999999752 2233 23356999999999999999999999999999999988743
Q ss_pred -hhhchhhHHH-----HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC------CCCCe
Q 017161 241 -KYVGEGARMV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNI 308 (376)
Q Consensus 241 -~~~g~~~~~~-----~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------~~~~v 308 (376)
..+|.....+ ..+....+.+..+||||||||.+ ++++++.|+++|+...-.+ .-.++
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 3444322211 22334445667799999999998 7889999999987532111 12478
Q ss_pred EEEEEeCCC-------------------------CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 017161 309 KVLMATNRP-------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 309 ~VI~tTn~~-------------------------~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
+||+|||.- ..+.|+|+. |+|.++.|++++.++..+|+...+.
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 899999932 135578888 9999999999999999999987764
No 79
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.68 E-value=1.8e-16 Score=163.39 Aligned_cols=212 Identities=19% Similarity=0.302 Sum_probs=141.7
Q ss_pred CCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeee
Q 017161 129 EGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCY 208 (376)
Q Consensus 129 ~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~ 208 (376)
.+.++.+++.+......|..-..-+.+..+.+++++.+|++++|++..++.++.++.. ..+.++||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~ 92 (531)
T TIGR02902 26 QTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIY 92 (531)
T ss_pred cCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEE
Confidence 3455566555544443333333334455677888999999999999999999876532 345689999
Q ss_pred cCCCChHHHHHHHHHHhc----------CCceEEEechhh-------hHhhhchhhH-------H---------HHHHHH
Q 017161 209 GPPGTGKTLLARAVANRT----------DACFIRVIGSEL-------VQKYVGEGAR-------M---------VRELFQ 255 (376)
Q Consensus 209 GppGtGKT~LakalA~~l----------~~~~i~v~~~el-------~~~~~g~~~~-------~---------~~~lf~ 255 (376)
||||||||++|+++++.+ +.+|+.++|... ....++.... . -...+.
T Consensus 93 Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~ 172 (531)
T TIGR02902 93 GPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT 172 (531)
T ss_pred CCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh
Confidence 999999999999998642 468899987631 1111111000 0 001122
Q ss_pred HHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc---------CCC--------------CCCCeEEE-
Q 017161 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD---------GFD--------------ARGNIKVL- 311 (376)
Q Consensus 256 ~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld---------~~~--------------~~~~v~VI- 311 (376)
.+ ...+|||||++.+ +...|+.|+.+|+.-. +.. ...++.+|
T Consensus 173 ~a---~gG~L~IdEI~~L-----------~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ 238 (531)
T TIGR02902 173 RA---HGGVLFIDEIGEL-----------HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIG 238 (531)
T ss_pred cc---CCcEEEEechhhC-----------CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEE
Confidence 22 3359999999999 7888999998886521 000 01234455
Q ss_pred EEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHC
Q 017161 312 MATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 370 (376)
Q Consensus 312 ~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t 370 (376)
+||+.++.++|++++ |+ ..+.|++++.+++.+|++..+++.++. ++..++.|++.+
T Consensus 239 ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~ 295 (531)
T TIGR02902 239 ATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA 295 (531)
T ss_pred EecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh
Confidence 556679999999999 88 578899999999999999999877643 223345555544
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.1e-15 Score=155.67 Aligned_cols=187 Identities=15% Similarity=0.196 Sum_probs=136.9
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceE----
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI---- 231 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i---- 231 (376)
..+..++++.+|++++|++.+++.|+.++.. + +.+.++||+||||||||++|+++|+.+++...
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~ 76 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITEN 76 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccC
Confidence 3456788999999999999999999988764 1 44678999999999999999999998865311
Q ss_pred --------EEechhhhHh----------hhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 232 --------RVIGSELVQK----------YVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 232 --------~v~~~el~~~----------~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
+-+|..+... ....+...++.+++.+.. ....|++|||+|.+ +...+
T Consensus 77 ~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a~ 145 (507)
T PRK06645 77 TTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGAF 145 (507)
T ss_pred cCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHHH
Confidence 1111111110 011234556777776653 34569999999988 44555
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.|+..+++ +...+++|++|+.++.+.+++++ |+ ..++|..++.++...+++..++..+.. .+..+..|++
T Consensus 146 naLLk~LEe-----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 146 NALLKTLEE-----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred HHHHHHHhh-----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666555543 45678888888889999999998 87 678999999999999999999876654 2345778888
Q ss_pred HCCCC
Q 017161 369 LCPNS 373 (376)
Q Consensus 369 ~t~g~ 373 (376)
.+.|.
T Consensus 218 ~s~Gs 222 (507)
T PRK06645 218 KSEGS 222 (507)
T ss_pred HcCCC
Confidence 88773
No 81
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.7e-15 Score=153.31 Aligned_cols=177 Identities=16% Similarity=0.260 Sum_probs=133.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC----------
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---------- 228 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~---------- 228 (376)
..++++.+|+||+|++.+++.|+.++.. | +.+.++||+||+|+|||++|+.+|+.+++
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 4568889999999999999999988865 2 44678999999999999999999987643
Q ss_pred --------------ceEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHH
Q 017161 229 --------------CFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (376)
Q Consensus 229 --------------~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (376)
.++.+++++ ..+...+|++.+.+.. ..+.|++|||+|.+ +.+.++
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~N 134 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFN 134 (491)
T ss_pred ccHHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHH
Confidence 223333321 1233456666666543 34569999999998 555566
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHH
Q 017161 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (376)
Q Consensus 291 ~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~ 369 (376)
.|+..|++ +...+.+|++|+.++.+.+.+++ |+ ..+.|..++.++....+...+.+.+.. ++..+..|++.
T Consensus 135 aLLK~LEe-----Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~ 206 (491)
T PRK14964 135 ALLKTLEE-----PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN 206 (491)
T ss_pred HHHHHHhC-----CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66655553 45678888899988899999998 77 779999999999999999888766544 34457788888
Q ss_pred CCC
Q 017161 370 CPN 372 (376)
Q Consensus 370 t~g 372 (376)
+.|
T Consensus 207 s~G 209 (491)
T PRK14964 207 SSG 209 (491)
T ss_pred cCC
Confidence 876
No 82
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.1e-15 Score=153.95 Aligned_cols=177 Identities=19% Similarity=0.286 Sum_probs=128.5
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc----------
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 229 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~---------- 229 (376)
+++++.+|++|+|++.+++.|+.++.. -..+..+|||||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 578899999999999999999999875 1344567999999999999999999987531
Q ss_pred -------------eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHH
Q 017161 230 -------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292 (376)
Q Consensus 230 -------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l 292 (376)
++.++... ..+...++++...+. ...+.||||||+|.+ +...++.|
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naL 136 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNAL 136 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHH
Confidence 22333211 112334555544433 245669999999977 34444544
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCC
Q 017161 293 LEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCP 371 (376)
Q Consensus 293 ~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~ 371 (376)
+..+.. ...++++|++|+.+..+.+.+.+ |+ ..+.|..|+.++...+++..+...++. .+..+..|++.+.
T Consensus 137 Lk~LEe-----p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 137 LKTLEE-----PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD 208 (504)
T ss_pred HHHHHh-----CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 444433 34567888888999999999998 77 589999999999999999988766654 3335778888877
Q ss_pred CC
Q 017161 372 NS 373 (376)
Q Consensus 372 g~ 373 (376)
|-
T Consensus 209 Gd 210 (504)
T PRK14963 209 GA 210 (504)
T ss_pred CC
Confidence 63
No 83
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=1.4e-15 Score=162.70 Aligned_cols=178 Identities=21% Similarity=0.244 Sum_probs=131.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------- 229 (376)
+.+++.+.+|++|+|++.+++.|+.++.. + +.+..+||+||+|||||++|+++|+.+++.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 45789999999999999999999999864 1 344568999999999999999999988642
Q ss_pred ------------------eEEEechhhhHhhhchhhHHHHHHHHHH----HcCCCeEEEEcCCcccccCCCCCCCCCCHH
Q 017161 230 ------------------FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNE 287 (376)
Q Consensus 230 ------------------~i~v~~~el~~~~~g~~~~~~~~lf~~a----~~~~psIl~iDEiD~l~~~r~~~~~~~~~~ 287 (376)
++.++.... .+...+|++.+.+ ......|+||||+|.+ +.+
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~ 135 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQ 135 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHH
Confidence 111111100 1123344443332 2345679999999999 667
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHH
Q 017161 288 VQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELL 366 (376)
Q Consensus 288 ~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~l 366 (376)
.++.|+.+|++ ...++++|++|+.++.|.+.|++ |+ ..+.|..++.++..++|+..++..++. .+..+..|
T Consensus 136 a~NaLLK~LEE-----pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lL 207 (824)
T PRK07764 136 GFNALLKIVEE-----PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLV 207 (824)
T ss_pred HHHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 78888877775 35678888888988889999998 77 789999999999999999888765554 22345667
Q ss_pred HHHCCC
Q 017161 367 ARLCPN 372 (376)
Q Consensus 367 A~~t~g 372 (376)
++.+.|
T Consensus 208 a~~sgG 213 (824)
T PRK07764 208 IRAGGG 213 (824)
T ss_pred HHHcCC
Confidence 777665
No 84
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-15 Score=156.10 Aligned_cols=168 Identities=23% Similarity=0.345 Sum_probs=132.1
Q ss_pred cccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh-------
Q 017161 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV------- 239 (376)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~------- 239 (376)
=.|--|+++++++|.+++..-... +-....-+.|+||||+|||+|++++|+.++..|++++...+.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 346889999999999998652111 112234577889999999999999999999999999865442
Q ss_pred --HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHh--cCC--------CCCCC
Q 017161 240 --QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL--DGF--------DARGN 307 (376)
Q Consensus 240 --~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--d~~--------~~~~~ 307 (376)
..|+|.....+-+-...|....| +++|||||.++..- .|++ ..+|++.|+-- ..| ...++
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~-----rGDP--aSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF-----RGDP--ASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC-----CCCh--HHHHHhhcCHhhcCchhhccccCccchhh
Confidence 34899988888888888888888 99999999996532 2343 35666666421 112 12458
Q ss_pred eEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 308 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 308 v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
|++|+|+|..+.++.+|+. |+ .+|+++-.+.++..+|-+.|+
T Consensus 467 VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 9999999999999999999 99 899999999999999999887
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=1.7e-15 Score=157.14 Aligned_cols=184 Identities=17% Similarity=0.225 Sum_probs=133.8
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEE-----
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR----- 232 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~----- 232 (376)
..+++++.+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++|+++|+.+++....
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pC 73 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC 73 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCC
Confidence 45678899999999999999999999875 1345679999999999999999999987543110
Q ss_pred ---EechhhhHh----------hhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHH
Q 017161 233 ---VIGSELVQK----------YVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (376)
Q Consensus 233 ---v~~~el~~~----------~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (376)
-.|..+... ....+...+++++..+. .....||||||+|.+ +...++.|+..
T Consensus 74 g~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~NALLKt 142 (709)
T PRK08691 74 GVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAFNAMLKT 142 (709)
T ss_pred cccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHHHHHHHH
Confidence 000000000 01123345667666543 234569999999987 55556666666
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 296 VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 296 l~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
|.+ ..+++.+|++|+.+..+.+.+++ |+ ..+.|+.++.++...+|+..+...++. .+..+..|++.+.|
T Consensus 143 LEE-----Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G 212 (709)
T PRK08691 143 LEE-----PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG 212 (709)
T ss_pred HHh-----CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 654 35678889999999999999987 88 678888999999999999988876654 33357788888776
No 86
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=1.6e-15 Score=155.81 Aligned_cols=179 Identities=13% Similarity=0.214 Sum_probs=132.9
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc-------
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~------- 229 (376)
.+.++++|.+|++++|++.+++.|+.++.. | +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~ 72 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC 72 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 467788999999999999999999998864 1 345679999999999999999999987431
Q ss_pred -----------------eEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHH
Q 017161 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (376)
Q Consensus 230 -----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~ 288 (376)
++.+++.. ..+...+|.+...+.. ....|++|||+|.+ +...
T Consensus 73 Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~~A 135 (605)
T PRK05896 73 CNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------STSA 135 (605)
T ss_pred CcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CHHH
Confidence 11222111 0122345666555443 23459999999998 4556
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHH
Q 017161 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (376)
Q Consensus 289 ~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA 367 (376)
++.|+..|++ +..++++|++|+.+..+.+++++ |+ ..+.|+.|+..+...+++..+...+.. .+..+..|+
T Consensus 136 ~NaLLKtLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 136 WNALLKTLEE-----PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred HHHHHHHHHh-----CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6777777665 45678888888889999999998 87 579999999999999998887665532 233567888
Q ss_pred HHCCC
Q 017161 368 RLCPN 372 (376)
Q Consensus 368 ~~t~g 372 (376)
+++.|
T Consensus 208 ~lS~G 212 (605)
T PRK05896 208 DLADG 212 (605)
T ss_pred HHcCC
Confidence 88876
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.9e-15 Score=153.47 Aligned_cols=178 Identities=16% Similarity=0.253 Sum_probs=131.0
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC---------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--------- 228 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~--------- 228 (376)
..+++++.+|++|+|++.+++.|..++.. + +.+..+||+||+|||||++|+++|+.+.+
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC 73 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 45678889999999999999999998864 1 34556899999999999999999998754
Q ss_pred ---------------ceEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 229 ---------------CFIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 229 ---------------~~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
.++.+++.. ..+...++.+...+. .....|+||||+|.+ +...+
T Consensus 74 g~C~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~ 136 (546)
T PRK14957 74 NKCENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSF 136 (546)
T ss_pred cccHHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHH
Confidence 122222211 011223344444433 244569999999998 56677
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.|+..|++ +.+.+.+|++|+.+..+.+.+++ |+ ..++|..++.++....++..++..++. .+..+..|++
T Consensus 137 naLLK~LEe-----pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 137 NALLKTLEE-----PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HHHHHHHhc-----CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777764 35677788888888888888888 88 899999999999998898887766544 3345677888
Q ss_pred HCCC
Q 017161 369 LCPN 372 (376)
Q Consensus 369 ~t~g 372 (376)
.+.|
T Consensus 209 ~s~G 212 (546)
T PRK14957 209 HAKG 212 (546)
T ss_pred HcCC
Confidence 8876
No 88
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.65 E-value=2.8e-15 Score=144.70 Aligned_cols=181 Identities=22% Similarity=0.317 Sum_probs=128.7
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC-----Cc
Q 017161 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----AC 229 (376)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~-----~~ 229 (376)
..+|.+++.|.+|+++.|.+++++.++.++.. ....+++||||||||||++++++++++. ..
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 35799999999999999999999999999864 1123589999999999999999999863 23
Q ss_pred eEEEechhhhHhhhchhhHHHHHHH-HHHHc-----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 017161 230 FIRVIGSELVQKYVGEGARMVRELF-QMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (376)
Q Consensus 230 ~i~v~~~el~~~~~g~~~~~~~~lf-~~a~~-----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 303 (376)
++.+++++.. ....++..+ ..+.. ..+.+|+|||+|.+ ..+.+..+..+++..
T Consensus 71 ~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~~---- 129 (319)
T PRK00440 71 FLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEMY---- 129 (319)
T ss_pred eEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhcC----
Confidence 4444433221 111122221 22221 23469999999988 444556666665432
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 017161 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 304 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~ 373 (376)
..++.+|+++|.+..+.+++.+ |+. .++|++|+.++...+++.+++..++. .+..+..|++.+.|-
T Consensus 130 -~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 130 -SQNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred -CCCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 3346677788888888888888 774 68999999999999999998776653 334678888887763
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.6e-15 Score=157.28 Aligned_cols=185 Identities=17% Similarity=0.224 Sum_probs=133.0
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCce------
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF------ 230 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~------ 230 (376)
.+.+++++.+|++|+|++.+++.|+.++.. -+.+..+||+||+|||||++|+++|+.+++.-
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~ 72 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGG 72 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccC
Confidence 356788899999999999999999999875 13456689999999999999999999886421
Q ss_pred -------EEEechhhhH----------hhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 231 -------IRVIGSELVQ----------KYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 231 -------i~v~~~el~~----------~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
.+-+|..+.. .....+...+|++...+.. ....|++|||+|.+ +...+
T Consensus 73 ~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-----------s~~a~ 141 (618)
T PRK14951 73 ITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-----------TNTAF 141 (618)
T ss_pred CCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------CHHHH
Confidence 0001111100 0001123356666665542 33469999999998 55556
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.|+..|++ ....+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+...++. .+..+..|++
T Consensus 142 NaLLKtLEE-----PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~ 213 (618)
T PRK14951 142 NAMLKTLEE-----PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR 213 (618)
T ss_pred HHHHHhccc-----CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666555543 45678888888888889889998 87 889999999999999999888766554 2335778888
Q ss_pred HCCC
Q 017161 369 LCPN 372 (376)
Q Consensus 369 ~t~g 372 (376)
.+.|
T Consensus 214 ~s~G 217 (618)
T PRK14951 214 AARG 217 (618)
T ss_pred HcCC
Confidence 8776
No 90
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=4.3e-15 Score=153.80 Aligned_cols=176 Identities=20% Similarity=0.321 Sum_probs=131.3
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc----------
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 229 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~---------- 229 (376)
.++++.+|++|+|++.+++.|+.++.. -+.+..+|||||+|||||++|+.+|+.+++.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 567889999999999999999999875 1345678999999999999999999987532
Q ss_pred --------------eEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHH
Q 017161 230 --------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRT 291 (376)
Q Consensus 230 --------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~ 291 (376)
++.+++. .+.+...++++...+.. ....|++|||+|.+ ....++.
T Consensus 76 C~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~na 138 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFNA 138 (559)
T ss_pred cHHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHH
Confidence 2222221 11234456666666542 34569999999998 4445555
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHC
Q 017161 292 MLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 370 (376)
Q Consensus 292 l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t 370 (376)
|+..+++ +..++++|++|+.++.+.+.+++ |+ ..+.|..|+..+...+++..++..++. .+..+..||+.+
T Consensus 139 LLKtLEe-----pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 139 LLKTLEE-----PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred HHHHhcC-----CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5555442 45678888888889999999998 87 578899999999999999988776654 334567788877
Q ss_pred CC
Q 017161 371 PN 372 (376)
Q Consensus 371 ~g 372 (376)
.|
T Consensus 211 ~G 212 (559)
T PRK05563 211 EG 212 (559)
T ss_pred CC
Confidence 76
No 91
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-15 Score=154.84 Aligned_cols=173 Identities=24% Similarity=0.397 Sum_probs=135.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh--
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-- 239 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~-- 239 (376)
...+--+|--|++++++++.+++..-.. .|-..++-+.|+||||+|||++++++|+.++..|++++...+.
T Consensus 405 Ak~iLdeDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDv 477 (906)
T KOG2004|consen 405 AKEILDEDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDV 477 (906)
T ss_pred HHHhhcccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccH
Confidence 3334446789999999999999865211 1333455677999999999999999999999999999865543
Q ss_pred -------HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CC--------
Q 017161 240 -------QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF-------- 302 (376)
Q Consensus 240 -------~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~-------- 302 (376)
..|+|.....+-+.+..+....| +++|||||.++. +..+++ ..+|+++|+--+ .|
T Consensus 478 AeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-----g~qGDP--asALLElLDPEQNanFlDHYLdVp 549 (906)
T KOG2004|consen 478 AEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-----GHQGDP--ASALLELLDPEQNANFLDHYLDVP 549 (906)
T ss_pred HhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-----CCCCCh--HHHHHHhcChhhccchhhhccccc
Confidence 24889888888888888888888 999999999973 112343 466777764211 11
Q ss_pred CCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 303 DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 303 ~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
-..+.|++|||+|..+.++++|+. |+ ..|+++-+..++...|-+.|+
T Consensus 550 ~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 550 VDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred cchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 123579999999999999999999 98 799999999999999999888
No 92
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.3e-15 Score=153.55 Aligned_cols=176 Identities=20% Similarity=0.281 Sum_probs=130.3
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc----------
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------- 229 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~---------- 229 (376)
+++++.+|++|+|++.+++.|+.++.. | +.+..+||+||+|||||++|+++|+.+++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 678899999999999999999999875 2 344568999999999999999999987642
Q ss_pred ----------------eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 230 ----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
++.+++.. ..+...++++...+. .....|++|||+|.+ +...+
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~ 135 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGF 135 (584)
T ss_pred cHHHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHH
Confidence 11122111 012233444443332 234569999999998 56667
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.|+..|++ ...++++|++|+.+..+.++|++ |+ ..+.|..++.++..+++..+++..++. .+..+..|++
T Consensus 136 NALLK~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 136 NALLKIVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHHHHHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777666664 45688889999989999999998 76 789999999999999999888776643 3335667777
Q ss_pred HCCC
Q 017161 369 LCPN 372 (376)
Q Consensus 369 ~t~g 372 (376)
.+.|
T Consensus 208 ~s~G 211 (584)
T PRK14952 208 AGGG 211 (584)
T ss_pred HcCC
Confidence 7766
No 93
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3e-15 Score=154.48 Aligned_cols=178 Identities=15% Similarity=0.226 Sum_probs=129.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------- 229 (376)
+.+++++.+|++|+|++.+++.|+.++.. + +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 56788999999999999999999999864 1 234679999999999999999999988652
Q ss_pred ----------------eEEEechhhhHhhhchhhHHHHHHHHHH----HcCCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 230 ----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a----~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
++.+++.. ..+...++.+...+ ......||||||+|.+ +.+.+
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~ 136 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAF 136 (624)
T ss_pred cccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHH
Confidence 23332211 01112233332222 2344569999999998 55566
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.|+..|++ ...++++|++|+.+..+.+.|++ |+ ..+.|+.++.++...+|+..+...++. .+..++.||+
T Consensus 137 naLLk~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 137 NALLKTLEE-----PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred HHHHHHhhc-----cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666554 34578888999988888888988 87 578999999999999998877765542 3345777888
Q ss_pred HCCC
Q 017161 369 LCPN 372 (376)
Q Consensus 369 ~t~g 372 (376)
.+.|
T Consensus 209 ~s~G 212 (624)
T PRK14959 209 RAAG 212 (624)
T ss_pred HcCC
Confidence 8776
No 94
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=3.3e-15 Score=156.27 Aligned_cols=185 Identities=18% Similarity=0.299 Sum_probs=134.8
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEE---E
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR---V 233 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~---v 233 (376)
.+.++++|.+|++|+|++.+++.|+.++.. | +.+..+|||||+|+|||++|+++|+.+.+.-.. -
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~ 74 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------N-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE 74 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC
Confidence 456788999999999999999999999975 1 345678999999999999999999987653210 0
Q ss_pred echhhh---Hh----hhc-----hhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 017161 234 IGSELV---QK----YVG-----EGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (376)
Q Consensus 234 ~~~el~---~~----~~g-----~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (376)
.|.... .. +.+ .+...+|++.+.+.. ....|++|||+|.+ ....++.|+..|.
T Consensus 75 pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLKtLE 143 (725)
T PRK07133 75 PCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLKTLE 143 (725)
T ss_pred chhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHHHhh
Confidence 111110 00 000 123446676666553 44569999999998 4555666666655
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 298 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 298 ~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
+ +...+++|++|+.++.|.+++++ |+ ..+.|.+|+.++...++...+...++. .+..+..||+++.|
T Consensus 144 E-----PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G 211 (725)
T PRK07133 144 E-----PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG 211 (725)
T ss_pred c-----CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 4 45678888888899999999999 88 589999999999999998877665543 22346778888876
No 95
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.64 E-value=1.8e-15 Score=161.70 Aligned_cols=165 Identities=22% Similarity=0.358 Sum_probs=125.8
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCC----CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh---
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--- 241 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~--- 241 (376)
.|+|++++++.+.+++.. .+.|+. |...+||+||||||||++|+++|..++.++++++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 488999999999888865 344543 23358999999999999999999999999999999987542
Q ss_pred --hhchhhH-----HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC------CCCCe
Q 017161 242 --YVGEGAR-----MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNI 308 (376)
Q Consensus 242 --~~g~~~~-----~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------~~~~v 308 (376)
.+|.... ..+.+....+.+..+||+|||||.+ ++++++.|+++++...-.+ +-.++
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 2333211 1233455556677899999999988 7889999999987532111 12468
Q ss_pred EEEEEeCCCC-------------------------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 309 KVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 309 ~VI~tTn~~~-------------------------~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
+||+|||... .+.|.|+. |||.++.|.+.+.++..+|++..+..
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 8999998631 24677777 99999999999999999999988753
No 96
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.63 E-value=6.4e-15 Score=147.50 Aligned_cols=183 Identities=23% Similarity=0.402 Sum_probs=120.1
Q ss_pred CCCCCccc-ccCcHHH--HHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCceEEE
Q 017161 162 KPDVTYND-VGGCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 233 (376)
Q Consensus 162 ~~~~~~~d-i~G~~~~--~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~v 233 (376)
.+..+|++ ++|.... ...++++...| + ....+++||||+|+|||+|++++++++ +..++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 45668888 5564443 33333333221 1 224569999999999999999999976 5678899
Q ss_pred echhhhHhhhchhhH-HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 017161 234 IGSELVQKYVGEGAR-MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (376)
Q Consensus 234 ~~~el~~~~~g~~~~-~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~ 312 (376)
++.++...+...... ....+....+ .+++|+|||++.+.+ ....+..++.+++.+.. .+.. +|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~---------~~~~~~~l~~~~n~~~~---~~~~-iii 237 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG---------KERTQEEFFHTFNALHE---NGKQ-IVL 237 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC---------CHHHHHHHHHHHHHHHH---CCCC-EEE
Confidence 988877665433211 1122222222 357999999999854 33456667777766531 2333 445
Q ss_pred EeC-CCC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 313 ATN-RPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 313 tTn-~~~---~ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
|+| .|. .+++.+++ ||. ..+.+++|+.++|..|++..+...++. ++..++.||+.+.+
T Consensus 238 ts~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 238 TSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS 302 (405)
T ss_pred ecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 555 443 46688888 886 479999999999999999998765543 33457778887664
No 97
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.63 E-value=5.3e-15 Score=147.44 Aligned_cols=178 Identities=25% Similarity=0.291 Sum_probs=119.5
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhc--CC-CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH-hhhch
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKL--GI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGE 245 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~--g~-~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~-~~~g~ 245 (376)
|+|++.+++.|..++..+++........ .. .+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 8999999999988775432221110000 11 23568999999999999999999999999999999988754 46676
Q ss_pred hh-HHHHHHHHHH----HcCCCeEEEEcCCcccccCCCCCCC---CCCHHHHHHHHHHHHHhc------C--CCCCCCeE
Q 017161 246 GA-RMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGV---GGDNEVQRTMLEIVNQLD------G--FDARGNIK 309 (376)
Q Consensus 246 ~~-~~~~~lf~~a----~~~~psIl~iDEiD~l~~~r~~~~~---~~~~~~~~~l~~ll~~ld------~--~~~~~~v~ 309 (376)
.. ..+..++..+ ....++||||||||.+...+.+++. -+...+|+.|+++|+.-. + ..+..+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 43 3344444332 2346789999999999776432211 123468888988885311 0 01112345
Q ss_pred EEEEeCCCC----------------------------------------------------CCCccccCCCCcceEEEec
Q 017161 310 VLMATNRPD----------------------------------------------------TLDPALLRPGRLDRKVEFG 337 (376)
Q Consensus 310 VI~tTn~~~----------------------------------------------------~ld~allr~gRfd~~i~~~ 337 (376)
+|+|+|-.. .+.|+|+. |+|.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 555555300 03455555 999999999
Q ss_pred CCCHHHHHHHHH
Q 017161 338 LPDLESRTQIFK 349 (376)
Q Consensus 338 ~Pd~~~r~~Il~ 349 (376)
+++.+...+|+.
T Consensus 311 ~L~~~~L~~Il~ 322 (412)
T PRK05342 311 ELDEEALVRILT 322 (412)
T ss_pred CCCHHHHHHHHH
Confidence 999999999997
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.63 E-value=5.7e-15 Score=144.89 Aligned_cols=179 Identities=22% Similarity=0.357 Sum_probs=129.6
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc-------
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~------- 229 (376)
.+.+++++.+|++++|++.+++.|++++.. | ..+..+|||||||+|||++|+++|..+.+.
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 70 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEP 70 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 356788899999999999999999998864 1 345679999999999999999999987432
Q ss_pred -----------------eEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHH
Q 017161 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (376)
Q Consensus 230 -----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~ 288 (376)
++.+++.. ......++.+++.+.. ....|++|||+|.+ +...
T Consensus 71 c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-----------~~~~ 133 (355)
T TIGR02397 71 CNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-----------SKSA 133 (355)
T ss_pred CCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-----------CHHH
Confidence 22222211 1123345667666543 23459999999988 3344
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHH
Q 017161 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (376)
Q Consensus 289 ~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA 367 (376)
++.++..+ +. +..++++|++|+.++.+.+++++ |+ ..++|++|+.++...++..+++..++. .+..+..|+
T Consensus 134 ~~~Ll~~l---e~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~ 205 (355)
T TIGR02397 134 FNALLKTL---EE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIA 205 (355)
T ss_pred HHHHHHHH---hC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44444444 32 34577888888988888899998 77 678999999999999999988766643 233466677
Q ss_pred HHCCC
Q 017161 368 RLCPN 372 (376)
Q Consensus 368 ~~t~g 372 (376)
..+.|
T Consensus 206 ~~~~g 210 (355)
T TIGR02397 206 RAADG 210 (355)
T ss_pred HHcCC
Confidence 77765
No 99
>PRK06893 DNA replication initiation factor; Validated
Probab=99.63 E-value=6.8e-15 Score=136.14 Aligned_cols=180 Identities=14% Similarity=0.229 Sum_probs=113.1
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
+.-.++.+|++++|.+... .+..+... +.. .....++||||||||||+|++++|+++ +....++..
T Consensus 7 ~~~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL-LLDSLRKN-------FID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH-HHHHHHHH-------hhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 3445677899987655432 22222211 111 123458999999999999999999975 334444444
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
..... ....++... ....+|+|||++.+.+ +...+..++.+++.+. ..+..++|.|+|
T Consensus 76 ~~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~---~~~~~illits~ 133 (229)
T PRK06893 76 SKSQY--------FSPAVLENL--EQQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIK---EQGKTLLLISAD 133 (229)
T ss_pred HHhhh--------hhHHHHhhc--ccCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHH---HcCCcEEEEeCC
Confidence 32110 111222222 2446999999999853 4455667888887653 233444455554
Q ss_pred -CCCCCC---ccccCCCCcceEEEecCCCHHHHHHHHHHHhcc--CCCCCcccHHHHHHHCCC
Q 017161 316 -RPDTLD---PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLARLCPN 372 (376)
Q Consensus 316 -~~~~ld---~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~--~~~~~~vdl~~lA~~t~g 372 (376)
.|..++ +.|+++.++...+.++.|+.++|.+|++..+.. +.++++ -++.|+++++|
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~-v~~~L~~~~~~ 195 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDE-VANFLLKRLDR 195 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhccC
Confidence 465544 889985555679999999999999999987754 444333 46778887765
No 100
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=2.6e-15 Score=154.44 Aligned_cols=178 Identities=19% Similarity=0.250 Sum_probs=131.5
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCce-------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF------- 230 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~------- 230 (376)
..+++++.+|++|+|++.+++.|..++.. -+.+..+||+||+|+|||++|+++|+.+++..
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pc 73 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPC 73 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 34677888999999999999999999875 13455689999999999999999999886521
Q ss_pred -----------------EEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 231 -----------------IRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 231 -----------------i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
+.+++. ...+...++++...+.. ....|+||||+|.+ +.+.+
T Consensus 74 g~C~~C~~i~~~~~~d~~ei~~~------~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~ 136 (527)
T PRK14969 74 GVCSACLEIDSGRFVDLIEVDAA------SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAF 136 (527)
T ss_pred CCCHHHHHHhcCCCCceeEeecc------ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHH
Confidence 111111 01223456666666543 33469999999998 55556
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.|+..+++ +..++.+|++|+.+..+.+.+++ |+ ..+.|..++.++....+...+...++. .+..+..|++
T Consensus 137 naLLK~LEe-----pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~ 208 (527)
T PRK14969 137 NAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLAR 208 (527)
T ss_pred HHHHHHHhC-----CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666554 45678888888888888888888 77 789999999999998888887655543 2345677888
Q ss_pred HCCC
Q 017161 369 LCPN 372 (376)
Q Consensus 369 ~t~g 372 (376)
.+.|
T Consensus 209 ~s~G 212 (527)
T PRK14969 209 AAAG 212 (527)
T ss_pred HcCC
Confidence 8776
No 101
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.62 E-value=5.8e-15 Score=149.69 Aligned_cols=186 Identities=24% Similarity=0.377 Sum_probs=122.2
Q ss_pred cCCCCCcccc-cCcHH--HHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCceEE
Q 017161 161 EKPDVTYNDV-GGCKE--QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIR 232 (376)
Q Consensus 161 ~~~~~~~~di-~G~~~--~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~ 232 (376)
-.+..+|++. +|... +...++++...| | ....+++||||||||||+|++++++++ +..+++
T Consensus 115 l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~y 183 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVY 183 (450)
T ss_pred CCCCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 3466788884 44333 444444444321 1 223569999999999999999999987 566888
Q ss_pred EechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 017161 233 VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (376)
Q Consensus 233 v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~ 312 (376)
+++.++...+..........-|.... ..+++|+|||++.+.+ ....+..++.+++.+. ..+..+||+
T Consensus 184 i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~---------~~~~~~~l~~~~n~l~---~~~~~iiit 250 (450)
T PRK00149 184 VTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAG---------KERTQEEFFHTFNALH---EAGKQIVLT 250 (450)
T ss_pred EEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcC---------CHHHHHHHHHHHHHHH---HCCCcEEEE
Confidence 99988877665443221112222221 2467999999999854 3345667777776653 123334444
Q ss_pred EeCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 313 ATNRPDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 313 tTn~~~~---ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
++..|.. +++.+++ ||. ..+.+..|+.++|..|++..+...++. ++..++.||+.+.|
T Consensus 251 s~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~ 314 (450)
T PRK00149 251 SDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS 314 (450)
T ss_pred CCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC
Confidence 4444443 6788888 886 589999999999999999998754432 33347778877665
No 102
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.4e-15 Score=145.58 Aligned_cols=184 Identities=18% Similarity=0.247 Sum_probs=129.2
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEec-
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG- 235 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~- 235 (376)
.+.++++|.+|++++|++.+++.++..+.. | ..+.++|||||||+|||++|+++|+.+........+
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 73 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNE 73 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 456789999999999999999999999965 2 345789999999999999999999987542111000
Q ss_pred ------hhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 017161 236 ------SELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (376)
Q Consensus 236 ------~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 305 (376)
.++ ......+...++.++..+.. ..+.||+|||+|.+ ....++.++..+ +. +.
T Consensus 74 ~~~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l-----------~~~~~~~ll~~l---e~--~~ 136 (367)
T PRK14970 74 DFSFNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML-----------SSAAFNAFLKTL---EE--PP 136 (367)
T ss_pred CCCcceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc-----------CHHHHHHHHHHH---hC--CC
Confidence 000 00011123456666665542 34569999999987 333344444443 32 34
Q ss_pred CCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 306 ~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
..+++|++|+.+..+.+++.+ |+ ..+.++.|+.++...++...+...++. ++..++.|+..+.|
T Consensus 137 ~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 137 AHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred CceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 456777788888899999988 66 578999999999999998888766643 33456777777765
No 103
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=8.5e-15 Score=148.00 Aligned_cols=178 Identities=18% Similarity=0.280 Sum_probs=128.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------- 229 (376)
..+++.+.+|++|+|++.++..|+.++.. | +.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEP 74 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCC
Confidence 45678889999999999999999999965 1 345679999999999999999999987432
Q ss_pred -----------------eEEEechhhhHhhhchhhHHHHHHHHHH----HcCCCeEEEEcCCcccccCCCCCCCCCCHHH
Q 017161 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (376)
Q Consensus 230 -----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a----~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~ 288 (376)
++.+++... .+...++.+.+.. ......|++|||+|.+ ..+.
T Consensus 75 c~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t~~~ 137 (451)
T PRK06305 75 CNQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------TKEA 137 (451)
T ss_pred CcccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------CHHH
Confidence 222222110 0112333333222 2245679999999998 4555
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHH
Q 017161 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (376)
Q Consensus 289 ~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA 367 (376)
++.|+..++. +.+++++|++|+.+..+.+++++ |+ ..++|..++.++...++...++..+.. .+..++.|+
T Consensus 138 ~n~LLk~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 138 FNSLLKTLEE-----PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred HHHHHHHhhc-----CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666665553 34577888888888999999998 77 679999999999999998887765543 334577888
Q ss_pred HHCCC
Q 017161 368 RLCPN 372 (376)
Q Consensus 368 ~~t~g 372 (376)
+.+.|
T Consensus 210 ~~s~g 214 (451)
T PRK06305 210 RAAQG 214 (451)
T ss_pred HHcCC
Confidence 88776
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.62 E-value=5.3e-15 Score=156.44 Aligned_cols=174 Identities=26% Similarity=0.319 Sum_probs=123.8
Q ss_pred cccccCCCCCcccccCcHHHHH---HHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEE
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIE---KMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~---~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v 233 (376)
.+.+..++.++++++|++..+. .++.++.. ....+++||||||||||++|+++|+.++..|+.+
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~l 83 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSL 83 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceee
Confidence 3556778899999999999885 56666653 2345799999999999999999999999999888
Q ss_pred echhhhHhhhchhhHHHHHHHHHH-----HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCe
Q 017161 234 IGSELVQKYVGEGARMVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (376)
Q Consensus 234 ~~~el~~~~~g~~~~~~~~lf~~a-----~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 308 (376)
++.... ...++..+..+ ......+|||||+|.+ +...+..|+..+. .+.+
T Consensus 84 na~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE-------~g~I 138 (725)
T PRK13341 84 NAVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVE-------NGTI 138 (725)
T ss_pred hhhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhc-------CceE
Confidence 765321 11223333332 1234569999999998 4555666665443 3557
Q ss_pred EEEEEeCC--CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc---------CCCCCcccHHHHHHHCCC
Q 017161 309 KVLMATNR--PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT---------MNCERDIRFELLARLCPN 372 (376)
Q Consensus 309 ~VI~tTn~--~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~---------~~~~~~vdl~~lA~~t~g 372 (376)
++|++|+. ...+++++++ |+ ..+.|++++.+++..+++..+.. +.++ +-.++.|++.++|
T Consensus 139 iLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~-deaL~~La~~s~G 209 (725)
T PRK13341 139 TLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE-PEAEKHLVDVANG 209 (725)
T ss_pred EEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC-HHHHHHHHHhCCC
Confidence 77776643 3568899998 65 57899999999999999988762 2222 2346778877765
No 105
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=4.2e-15 Score=154.53 Aligned_cols=177 Identities=20% Similarity=0.324 Sum_probs=133.0
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc---------
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------- 229 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~--------- 229 (376)
.+++++.+|++|+|++.+++.|+.++.. | +.+..+|||||+|+|||++|+++|+.+++.
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 4678889999999999999999999865 2 345678999999999999999999987542
Q ss_pred ---------------eEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHH
Q 017161 230 ---------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQR 290 (376)
Q Consensus 230 ---------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~ 290 (376)
++.+++.. ..+...++++...+.. ....|++|||+|.+ +...++
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~n 137 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFN 137 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHH
Confidence 22222211 1123345666555432 23459999999998 556677
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHH
Q 017161 291 TMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (376)
Q Consensus 291 ~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~ 369 (376)
.|+..|++ +..++++|++|+.++.|.+.|++ |+ ..+.|..++..+....+...++..++. .+..+..|++.
T Consensus 138 aLLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~ 209 (576)
T PRK14965 138 ALLKTLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARK 209 (576)
T ss_pred HHHHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 77777764 45688899999999999999998 77 688999999999888888877766543 33457778888
Q ss_pred CCC
Q 017161 370 CPN 372 (376)
Q Consensus 370 t~g 372 (376)
+.|
T Consensus 210 a~G 212 (576)
T PRK14965 210 GDG 212 (576)
T ss_pred cCC
Confidence 776
No 106
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.62 E-value=1.5e-15 Score=163.92 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=121.9
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCC---CCC-ceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHh
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID---PPK-GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK 241 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~---~~~-~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~ 241 (376)
.|+|++.+++.+.+++... ..|+. .|. .+||+||||||||.+|+++|..+ ...+++++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 4999999999999999752 22332 233 48999999999999999999988 457899999887543
Q ss_pred -----hhchhhHHH-----HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC------C
Q 017161 242 -----YVGEGARMV-----RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA------R 305 (376)
Q Consensus 242 -----~~g~~~~~~-----~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~------~ 305 (376)
.+|....++ ..+....+.++++||+||||+.+ ++++++.|+++++...-.+. -
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEec
Confidence 222221111 12445556688899999999987 88899999999876421111 2
Q ss_pred CCeEEEEEeCCCC-----------------------------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 306 GNIKVLMATNRPD-----------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 306 ~~v~VI~tTn~~~-----------------------------~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
.+++||+|||... .+.|+|++ |++ .|.|.+++.++..+|+...+..
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 4789999999521 24577777 997 8999999999999999887744
No 107
>PRK08727 hypothetical protein; Validated
Probab=99.60 E-value=3e-14 Score=132.20 Aligned_cols=174 Identities=17% Similarity=0.280 Sum_probs=114.1
Q ss_pred ccCCCCCccccc-CcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 160 EEKPDVTYNDVG-GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 160 ~~~~~~~~~di~-G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
.-.+..+|++.+ |.......+..... + .....++|+||+|||||+|+.++++++ +....++..
T Consensus 11 ~~~~~~~f~~f~~~~~n~~~~~~~~~~------------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 11 RYPSDQRFDSYIAAPDGLLAQLQALAA------------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCCcCChhhccCCcHHHHHHHHHHHh------------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 344556777754 44444444443321 1 123569999999999999999998764 555566665
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
.++.. .+...+.... ...+|+|||++.+.. ....+..++.+++... ..+..||+|+|
T Consensus 78 ~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~---------~~~~~~~lf~l~n~~~----~~~~~vI~ts~ 134 (233)
T PRK08727 78 QAAAG--------RLRDALEALE--GRSLVALDGLESIAG---------QREDEVALFDFHNRAR----AAGITLLYTAR 134 (233)
T ss_pred HHhhh--------hHHHHHHHHh--cCCEEEEeCcccccC---------ChHHHHHHHHHHHHHH----HcCCeEEEECC
Confidence 54332 2223333333 346999999998853 3345667777777653 12344666666
Q ss_pred C-CCC---CCccccCCCCc--ceEEEecCCCHHHHHHHHHHHhcc--CCCCCcccHHHHHHHCCC
Q 017161 316 R-PDT---LDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLARLCPN 372 (376)
Q Consensus 316 ~-~~~---ld~allr~gRf--d~~i~~~~Pd~~~r~~Il~~~~~~--~~~~~~vdl~~lA~~t~g 372 (376)
. |.. ++++|++ || ...+.++.|+.+++..|++.++.. +.++ +..++.|+++++|
T Consensus 135 ~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~-~e~~~~La~~~~r 196 (233)
T PRK08727 135 QMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD-EAAIDWLLTHGER 196 (233)
T ss_pred CChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhCCC
Confidence 4 544 4789998 86 468899999999999999987654 4443 3356788888775
No 108
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.60 E-value=9.2e-15 Score=156.28 Aligned_cols=167 Identities=18% Similarity=0.296 Sum_probs=123.1
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh--------
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV-------- 239 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~-------- 239 (376)
.++.|++++++.|.+++..... .+-.....++|+||||||||++++.+|+.++.+|++++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 3589999999999988864211 1112345699999999999999999999999999998866532
Q ss_pred -HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc------CC----CCCCCe
Q 017161 240 -QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF----DARGNI 308 (376)
Q Consensus 240 -~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld------~~----~~~~~v 308 (376)
..|.|.....+...+..+....| ||+|||+|.+.... .+ +.+..|+++++.-. .+ -..+++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~-----~g--~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM-----RG--DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc-----CC--CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 23555555555555555544455 89999999996432 11 23567777775311 11 123789
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 017161 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 309 ~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
++|+|+|.. .++++|++ || ..|.|..++.++..+|.+.|+-
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhh
Confidence 999999987 59999999 99 5899999999999999998883
No 109
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1e-14 Score=148.43 Aligned_cols=185 Identities=19% Similarity=0.257 Sum_probs=129.7
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc-------
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~------- 229 (376)
.+..++++.+|++++|++.+++.|+.++.. + +.+..+|||||+|+|||++|+.+|..+++.
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~p 72 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKL-----------Q-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEP 72 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCC
Confidence 356678899999999999999999999965 1 344568899999999999999999987531
Q ss_pred e-EEEechhhhH----------hhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHH
Q 017161 230 F-IRVIGSELVQ----------KYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLE 294 (376)
Q Consensus 230 ~-i~v~~~el~~----------~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ 294 (376)
+ .+.+|..+.. .....+...++.+...+.. ..+.|++|||+|.+ +...++.|+.
T Consensus 73 c~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~naLLk 141 (486)
T PRK14953 73 CGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAFNALLK 141 (486)
T ss_pred CCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHHHHHHH
Confidence 0 0011111100 0001122334555544432 34569999999988 4445566655
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 295 IVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 295 ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
.+.. +...+++|++|+.++.+.+++++ |+ ..+.|++|+.++...++..+++..++. .+..+..||..+.|
T Consensus 142 ~LEe-----pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 142 TLEE-----PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred HHhc-----CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5543 34567777788888888889988 77 579999999999999999988876654 23346778888776
No 110
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.59 E-value=2.9e-14 Score=131.03 Aligned_cols=182 Identities=24% Similarity=0.427 Sum_probs=114.2
Q ss_pred CCCCccccc-C--cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCceEEEe
Q 017161 163 PDVTYNDVG-G--CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVI 234 (376)
Q Consensus 163 ~~~~~~di~-G--~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~v~ 234 (376)
|..+|++.+ | ...+...++.....+ + .....++||||+|+|||+|++++++++ +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 567888864 4 334444444444321 1 122458999999999999999999864 56788999
Q ss_pred chhhhHhhhchhhH-HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 017161 235 GSELVQKYVGEGAR-MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (376)
Q Consensus 235 ~~el~~~~~g~~~~-~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~t 313 (376)
+.++...+...... .+..+.... ....+|+||+++.+.+ ....+..+..+++.+. ..+.. +|+|
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~---~~~k~-li~t 136 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAG---------KQRTQEELFHLFNRLI---ESGKQ-LILT 136 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHH---HTTSE-EEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcC---------chHHHHHHHHHHHHHH---hhCCe-EEEE
Confidence 88887766543322 122222222 2456999999999943 4567888888888764 23444 4555
Q ss_pred e-CCCCC---CCccccCCCCcce--EEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 314 T-NRPDT---LDPALLRPGRLDR--KVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 314 T-n~~~~---ld~allr~gRfd~--~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
+ ..|.. +++.|.+ ||.. .+.+..|+.+.|.+|++..+...++. ++.-++.|++.+++
T Consensus 137 s~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 137 SDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp ESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS
T ss_pred eCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC
Confidence 5 44544 5678888 7755 89999999999999999988766554 22235667777653
No 111
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.59 E-value=4e-14 Score=131.56 Aligned_cols=174 Identities=17% Similarity=0.239 Sum_probs=115.6
Q ss_pred cCCCCCccccc--CcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC---CceEEEec
Q 017161 161 EKPDVTYNDVG--GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIG 235 (376)
Q Consensus 161 ~~~~~~~~di~--G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~---~~~i~v~~ 235 (376)
-.++.+|++.+ +...++..++.+... ....+++||||+|||||+|++++++++. .....+..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 45566777765 456677777766543 2335799999999999999999998753 34455555
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
...... ..++.+.... ..+|+|||++.+.+ +...+..+..+++.+. ..++..+|+|++
T Consensus 82 ~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~---e~g~~~li~ts~ 139 (235)
T PRK08084 82 DKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRIL---ESGRTRLLITGD 139 (235)
T ss_pred HHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHH---HcCCCeEEEeCC
Confidence 443211 1112222221 25999999999843 4566777878877653 234444555555
Q ss_pred C-CCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhcc--CCCCCcccHHHHHHHCCC
Q 017161 316 R-PDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLARLCPN 372 (376)
Q Consensus 316 ~-~~~---ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~--~~~~~~vdl~~lA~~t~g 372 (376)
. |.. +.|.|++ |+. ..+.+.+|+.+++.++++..+.. +.++++ -++.|+++++|
T Consensus 140 ~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~-v~~~L~~~~~~ 201 (235)
T PRK08084 140 RPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPED-VGRFLLKRLDR 201 (235)
T ss_pred CChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhhcC
Confidence 4 444 5799999 875 79999999999999999886654 444333 46778887765
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.59 E-value=4.6e-14 Score=130.18 Aligned_cols=171 Identities=18% Similarity=0.214 Sum_probs=115.5
Q ss_pred ccCCCCCccccc--CcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEe
Q 017161 160 EEKPDVTYNDVG--GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (376)
Q Consensus 160 ~~~~~~~~~di~--G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~ 234 (376)
...++.+|+++. +...++..+++++. +.....+++|+||+|||||+||+++++++ +..++.++
T Consensus 10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 10 GPPPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCCChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 345566788855 45666667666654 23456789999999999999999999975 66788888
Q ss_pred chhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 017161 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (376)
Q Consensus 235 ~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT 314 (376)
+.++... +. ......+|+|||+|.+ +...+..+..+++... ..+..++|+++
T Consensus 78 ~~~~~~~------------~~--~~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~---~~~~~~vl~~~ 129 (227)
T PRK08903 78 AASPLLA------------FD--FDPEAELYAVDDVERL-----------DDAQQIALFNLFNRVR---AHGQGALLVAG 129 (227)
T ss_pred hHHhHHH------------Hh--hcccCCEEEEeChhhc-----------CchHHHHHHHHHHHHH---HcCCcEEEEeC
Confidence 8765322 11 1224569999999987 3345677777776653 23344455555
Q ss_pred CCC---CCCCccccCCCCc--ceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 315 NRP---DTLDPALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 315 n~~---~~ld~allr~gRf--d~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
+.+ ..+.+.|++ || ...+.+++|+.+++..++..+....++. ++.-+..|++..+|
T Consensus 130 ~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g 191 (227)
T PRK08903 130 PAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR 191 (227)
T ss_pred CCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 542 235577776 66 4799999999999999998876554433 22346667776655
No 113
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2e-14 Score=148.58 Aligned_cols=183 Identities=19% Similarity=0.239 Sum_probs=128.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCce-------E
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF-------I 231 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~-------i 231 (376)
..+++|.+|++|+|++.+++.|+.++.. | +.+..+|||||+|+|||++|+++|+.+.+.- -
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 4567889999999999999999999974 1 3456799999999999999999999875420 0
Q ss_pred -EEechhhhHh-------hhc---hhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 017161 232 -RVIGSELVQK-------YVG---EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 296 (376)
Q Consensus 232 -~v~~~el~~~-------~~g---~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 296 (376)
+.+|-.+... +-| .+...++++...+. .....|++|||+|.+ +...++.|+..+
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~naLLK~L 143 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFNALLKTI 143 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHHHHHHhh
Confidence 0001111000 011 12234455543332 345569999999998 455555555544
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 297 NQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 297 ~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
.+ +...+++|++|+.+..+.++|++ |+ ..++|..++.++...+++..++..++. .+..+..||+.+.|
T Consensus 144 Ee-----pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G 212 (563)
T PRK06647 144 EE-----PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG 212 (563)
T ss_pred cc-----CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 42 45678888888888899999998 87 578999999999999999888665543 33456778877776
No 114
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.3e-14 Score=145.19 Aligned_cols=178 Identities=20% Similarity=0.242 Sum_probs=132.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------- 229 (376)
+.+++++.+|++|+|++.+++.|+.++.. | +.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 45678999999999999999999999864 2 345668999999999999999999987321
Q ss_pred ----------------eEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 230 ----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
++.+++.. ..+...++++...+.. ...-|++|||+|.+ +.+.+
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~ 134 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAF 134 (535)
T ss_pred cccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHH
Confidence 12222111 0123455665554322 23359999999998 66777
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.|+..+.+ +..++.+|++|+.+..+.+++++ |+ ..++|..++.++....+...++..++. .+..+..||+
T Consensus 135 NALLK~LEE-----pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 135 NALLKTLEE-----PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred HHHHHHHhh-----cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777777765 35667788888888999999999 86 689999999999999998888765543 3345778888
Q ss_pred HCCC
Q 017161 369 LCPN 372 (376)
Q Consensus 369 ~t~g 372 (376)
.+.|
T Consensus 207 ~s~G 210 (535)
T PRK08451 207 SGNG 210 (535)
T ss_pred HcCC
Confidence 7776
No 115
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.2e-14 Score=146.88 Aligned_cols=187 Identities=17% Similarity=0.229 Sum_probs=136.3
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEe-
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI- 234 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~- 234 (376)
....+++.+.+|++|+|++.+++.|..++.. | +.+..+||+||+|+|||++|+++|+.+++.....+
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~ 79 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDG 79 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccC
Confidence 4456788999999999999999999998875 2 45678999999999999999999998865422111
Q ss_pred ------------chhhhHhh----------hchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHH
Q 017161 235 ------------GSELVQKY----------VGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (376)
Q Consensus 235 ------------~~el~~~~----------~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~ 288 (376)
|..+.... ...+...+|++...+.. ....|+||||+|.+ +...
T Consensus 80 ~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a 148 (598)
T PRK09111 80 GPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAA 148 (598)
T ss_pred CCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHH
Confidence 10111000 01123456777666643 33569999999998 5556
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHH
Q 017161 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (376)
Q Consensus 289 ~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA 367 (376)
++.|+..|++ +..++++|++|+.++.+.+.+++ |+ ..+.|..|+.++...+++..+++.+.. .+..++.|+
T Consensus 149 ~naLLKtLEe-----Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa 220 (598)
T PRK09111 149 FNALLKTLEE-----PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA 220 (598)
T ss_pred HHHHHHHHHh-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666654 35678888888888888889988 87 689999999999999999888766544 234567778
Q ss_pred HHCCCC
Q 017161 368 RLCPNS 373 (376)
Q Consensus 368 ~~t~g~ 373 (376)
+.+.|.
T Consensus 221 ~~a~Gd 226 (598)
T PRK09111 221 RAAEGS 226 (598)
T ss_pred HHcCCC
Confidence 877764
No 116
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=3.1e-14 Score=146.49 Aligned_cols=183 Identities=19% Similarity=0.317 Sum_probs=123.3
Q ss_pred CCCCCccccc-CcHHH--HHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCceEEE
Q 017161 162 KPDVTYNDVG-GCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 233 (376)
Q Consensus 162 ~~~~~~~di~-G~~~~--~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~v 233 (376)
.+..+|++++ |.... ...++.++.. .+ ...+.++|||++|||||+|++++++++ +..++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~----------~~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi 350 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEA----------PA-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV 350 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhC----------cc-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 4567888864 44332 2333443332 11 122359999999999999999999976 5678899
Q ss_pred echhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 017161 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (376)
Q Consensus 234 ~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~t 313 (376)
++.+++..+.........+.|... ...+++|+||||+.+.+ ....+..|+.+++.+.. . +..||+|
T Consensus 351 taeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~g---------ke~tqeeLF~l~N~l~e---~-gk~IIIT 416 (617)
T PRK14086 351 SSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLED---------KESTQEEFFHTFNTLHN---A-NKQIVLS 416 (617)
T ss_pred eHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccC---------CHHHHHHHHHHHHHHHh---c-CCCEEEe
Confidence 998888776554332222234332 23467999999999854 44556778888887641 2 2335667
Q ss_pred eCCC----CCCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCC
Q 017161 314 TNRP----DTLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCP 371 (376)
Q Consensus 314 Tn~~----~~ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~ 371 (376)
+|.+ ..+++.|++ ||. ..+.+..||.+.|..||+.++...++. ++.-++.||.+..
T Consensus 417 Sd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~ 479 (617)
T PRK14086 417 SDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRIS 479 (617)
T ss_pred cCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcc
Confidence 7764 457889999 774 577999999999999999988765544 2233567777655
No 117
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.58 E-value=2.6e-14 Score=141.98 Aligned_cols=179 Identities=23% Similarity=0.298 Sum_probs=120.1
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHh----cCC-CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH-hhh
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVK----LGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYV 243 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~----~g~-~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~-~~~ 243 (376)
|+|++++++.+..++....+....... -++ ....++||+||||||||++|+++|..++.+|..+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 899999999998887432222100000 011 12358999999999999999999999999999999887753 466
Q ss_pred chh-hHHHHHHHHHH----HcCCCeEEEEcCCcccccCCCCCCCC---CCHHHHHHHHHHHHHhc------C--CCCCCC
Q 017161 244 GEG-ARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVG---GDNEVQRTMLEIVNQLD------G--FDARGN 307 (376)
Q Consensus 244 g~~-~~~~~~lf~~a----~~~~psIl~iDEiD~l~~~r~~~~~~---~~~~~~~~l~~ll~~ld------~--~~~~~~ 307 (376)
|.. ...+..++..+ ....++||||||+|.+..++..++.. ....+|+.|+++|+... + ..+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 33444444322 23456799999999998754332211 12368888888884210 0 111235
Q ss_pred eEEEEEeCCC---------------------------C-----------------------CCCccccCCCCcceEEEec
Q 017161 308 IKVLMATNRP---------------------------D-----------------------TLDPALLRPGRLDRKVEFG 337 (376)
Q Consensus 308 v~VI~tTn~~---------------------------~-----------------------~ld~allr~gRfd~~i~~~ 337 (376)
.++|+|+|-. + .+.|+|+. |+|.++.|.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecC
Confidence 6788887751 0 03355555 999999999
Q ss_pred CCCHHHHHHHHHH
Q 017161 338 LPDLESRTQIFKI 350 (376)
Q Consensus 338 ~Pd~~~r~~Il~~ 350 (376)
+.+.++..+|+..
T Consensus 317 pL~~~~L~~Il~~ 329 (413)
T TIGR00382 317 KLDEEALIAILTK 329 (413)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999876
No 118
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.58 E-value=5.6e-14 Score=129.11 Aligned_cols=172 Identities=23% Similarity=0.317 Sum_probs=115.7
Q ss_pred CCCCccccc--CcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechh
Q 017161 163 PDVTYNDVG--GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE 237 (376)
Q Consensus 163 ~~~~~~di~--G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~e 237 (376)
.+.+|+++. +....++.+++++.. ..+.+++|+||+|||||++|+++++.+ +.+++.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 344566654 567788888877642 346789999999999999999999876 56788899888
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR- 316 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~- 316 (376)
+.... ..++.... .+.+|+|||+|.+.. +...+..+..+++.+.. .+. .+|+|++.
T Consensus 77 ~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~---~~~-~iIits~~~ 133 (226)
T TIGR03420 77 LAQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVRE---AGG-RLLIAGRAA 133 (226)
T ss_pred HHHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCC-eEEEECCCC
Confidence 75432 22232222 235999999999832 22346677777765431 222 45556653
Q ss_pred CCCCC---ccccCCCCc--ceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 317 PDTLD---PALLRPGRL--DRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 317 ~~~ld---~allr~gRf--d~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
+..++ +.+.+ |+ ...+.+++|+.+++..+++.+....++. ++--+..|+..++|
T Consensus 134 ~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g 193 (226)
T TIGR03420 134 PAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR 193 (226)
T ss_pred hHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 33332 66776 65 4789999999999999999877654433 22345677776554
No 119
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.57 E-value=5.2e-14 Score=138.70 Aligned_cols=166 Identities=22% Similarity=0.324 Sum_probs=114.1
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC---------CceEEEech
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---------ACFIRVIGS 236 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~---------~~~i~v~~~ 236 (376)
..+++.|.+++++.|..++...+. | ..+.+++|+||||||||++++++++++. ..++.++|.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 345799999999999998864221 2 3456799999999999999999998652 467788875
Q ss_pred hhhH----------hhh--ch--------hhHHHHHHHHHHH-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHH
Q 017161 237 ELVQ----------KYV--GE--------GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (376)
Q Consensus 237 el~~----------~~~--g~--------~~~~~~~lf~~a~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (376)
.... ... |. ....+..++.... ...+.||+|||+|.+... . +..+.++
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~---~~~L~~l 152 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D---DDLLYQL 152 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C---cHHHHhH
Confidence 4321 111 11 1223344555443 355779999999999621 1 1234444
Q ss_pred HHHhcC-CCCCCCeEEEEEeCCCC---CCCccccCCCCcc-eEEEecCCCHHHHHHHHHHHhc
Q 017161 296 VNQLDG-FDARGNIKVLMATNRPD---TLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 296 l~~ld~-~~~~~~v~VI~tTn~~~---~ld~allr~gRfd-~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
+...+. .....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..+.
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 433111 11235788999999875 57888877 774 6799999999999999998886
No 120
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.2e-14 Score=147.70 Aligned_cols=184 Identities=17% Similarity=0.232 Sum_probs=131.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEE-----
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR----- 232 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~----- 232 (376)
+.+++++.+|++++|++.++..|+.++.. + +.+.++|||||+|+|||++|+++|+.+.+....
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~ 73 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE 73 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC
Confidence 45678889999999999999999999875 1 234579999999999999999999988652110
Q ss_pred --Eechh--hh-----------HhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHH
Q 017161 233 --VIGSE--LV-----------QKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 293 (376)
Q Consensus 233 --v~~~e--l~-----------~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 293 (376)
-.|.. .+ ......+...+|++...+.. ....|+||||+|.+ +.+.++.|+
T Consensus 74 ~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~naLL 142 (620)
T PRK14948 74 PCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFNALL 142 (620)
T ss_pred CCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHHHHH
Confidence 00100 00 00112334567777766643 33469999999998 555666666
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 294 EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 294 ~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
..|++ ....+++|++|+.+..+-++|++ |+ ..+.|..++.++....+...+.+.++. ....+..|++.+.|
T Consensus 143 K~LEe-----Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 143 KTLEE-----PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHhc-----CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 66553 45678888888888889999998 87 678999999988888887777654433 22347778887776
No 121
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.57 E-value=1.1e-14 Score=143.19 Aligned_cols=177 Identities=28% Similarity=0.393 Sum_probs=126.2
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhcC-CCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH-hhhc-hh
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKLG-IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EG 246 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~-~~~g-~~ 246 (376)
|+|++++++.+.-++........+...+. --+|+++||+||||||||++|+++|..++.+|+.+++..+.. .|+| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 89999999999888865332221111111 124689999999999999999999999999999999887764 5666 44
Q ss_pred hHHHHHHHHHH---------------------------------------------------------------------
Q 017161 247 ARMVRELFQMA--------------------------------------------------------------------- 257 (376)
Q Consensus 247 ~~~~~~lf~~a--------------------------------------------------------------------- 257 (376)
+..++.+|..|
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 55555555544
Q ss_pred ----------------------------------------------------------------------HcCCCeEEEE
Q 017161 258 ----------------------------------------------------------------------RSKKACIVFF 267 (376)
Q Consensus 258 ----------------------------------------------------------------------~~~~psIl~i 267 (376)
+.....||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0012349999
Q ss_pred cCCcccccCCCCCC-CCCCHHHHHHHHHHHHHh-----cCCCCCCCeEEEEEeC----CCCCCCccccCCCCcceEEEec
Q 017161 268 DEVDAIGGARFDDG-VGGDNEVQRTMLEIVNQL-----DGFDARGNIKVLMATN----RPDTLDPALLRPGRLDRKVEFG 337 (376)
Q Consensus 268 DEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l-----d~~~~~~~v~VI~tTn----~~~~ld~allr~gRfd~~i~~~ 337 (376)
||||+++.+....+ .-....+|+.|+.+++-- .+.-...++++||+.- .|+.|-|.|.- ||...+.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 99999997652211 223455888887776531 0112346788888654 46777788876 999999999
Q ss_pred CCCHHHHHHHH
Q 017161 338 LPDLESRTQIF 348 (376)
Q Consensus 338 ~Pd~~~r~~Il 348 (376)
.++.++-.+||
T Consensus 332 ~L~~edL~rIL 342 (441)
T TIGR00390 332 ALTTDDFERIL 342 (441)
T ss_pred CCCHHHHHHHh
Confidence 99999999988
No 122
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.56 E-value=1.9e-14 Score=136.89 Aligned_cols=174 Identities=28% Similarity=0.417 Sum_probs=122.5
Q ss_pred cccCCCCCcccccCcHHHHHH---HHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc---eEE
Q 017161 159 VEEKPDVTYNDVGGCKEQIEK---MREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIR 232 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~---l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~---~i~ 232 (376)
.+.-++.+++|.+|++..+.+ |+.+|+. ..-.+++||||||||||+||+.++.....+ |+.
T Consensus 129 aermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfve 195 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVE 195 (554)
T ss_pred hhhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEE
Confidence 345667788999998877654 3444432 233479999999999999999999987655 655
Q ss_pred EechhhhHhhhchhhHHHHHHHHHHHc-----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 017161 233 VIGSELVQKYVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (376)
Q Consensus 233 v~~~el~~~~~g~~~~~~~~lf~~a~~-----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 307 (376)
+++.. .....+|.+|+.++. +...|||||||+.+ +...|.+++-.++ .+.
T Consensus 196 lSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----------NksQQD~fLP~VE-------~G~ 250 (554)
T KOG2028|consen 196 LSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----------NKSQQDTFLPHVE-------NGD 250 (554)
T ss_pred Eeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----------hhhhhhcccceec-------cCc
Confidence 55432 244567888888764 45679999999998 4445555554432 577
Q ss_pred eEEEEEe--CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc--------CCCCC------cccHHHHHHHCC
Q 017161 308 IKVLMAT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT--------MNCER------DIRFELLARLCP 371 (376)
Q Consensus 308 v~VI~tT--n~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~--------~~~~~------~vdl~~lA~~t~ 371 (376)
+.+|++| |..-.|+.+|++ |+ +++.+...+.+....||..-... .+++. +--++.||..|+
T Consensus 251 I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd 327 (554)
T KOG2028|consen 251 ITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD 327 (554)
T ss_pred eEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcC
Confidence 8888876 445678999999 77 78888989999999999874431 12211 123577888887
Q ss_pred CC
Q 017161 372 NS 373 (376)
Q Consensus 372 g~ 373 (376)
|-
T Consensus 328 GD 329 (554)
T KOG2028|consen 328 GD 329 (554)
T ss_pred ch
Confidence 74
No 123
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.56 E-value=6.3e-14 Score=146.73 Aligned_cols=188 Identities=18% Similarity=0.264 Sum_probs=129.5
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCceEEEe
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVI 234 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~~i~v~ 234 (376)
...+.|.|.++++++|..++...+. |-.++..++|+|+||||||++++.+..++ ...++.|+
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 3446799999999999999875322 22233345799999999999999998765 25578899
Q ss_pred chhhhHh----------hhc-------hhhHHHHHHHHHHH--cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHH
Q 017161 235 GSELVQK----------YVG-------EGARMVRELFQMAR--SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (376)
Q Consensus 235 ~~el~~~----------~~g-------~~~~~~~~lf~~a~--~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (376)
|..+... ..+ .....+..+|.... .....||+|||||.+... .+..|+.|
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnL 892 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTL 892 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHH
Confidence 8543211 101 12234556666542 234579999999999532 25667777
Q ss_pred HHHhcCCCCCCCeEEEEEeCC---CCCCCccccCCCCcce-EEEecCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHC
Q 017161 296 VNQLDGFDARGNIKVLMATNR---PDTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRTMN-CERDIRFELLARLC 370 (376)
Q Consensus 296 l~~ld~~~~~~~v~VI~tTn~---~~~ld~allr~gRfd~-~i~~~~Pd~~~r~~Il~~~~~~~~-~~~~vdl~~lA~~t 370 (376)
++... .....+.||+++|. ++.|+|.+++ ||.. .+.|++++.+++.+||+..+.... +-.+..++.+|+++
T Consensus 893 FR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV 968 (1164)
T PTZ00112 893 FDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV 968 (1164)
T ss_pred HHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 77543 23457889999986 5667888887 6643 588999999999999999887532 22333477788866
Q ss_pred CCCCC
Q 017161 371 PNSTG 375 (376)
Q Consensus 371 ~g~sG 375 (376)
...+|
T Consensus 969 Aq~SG 973 (1164)
T PTZ00112 969 ANVSG 973 (1164)
T ss_pred hhcCC
Confidence 65554
No 124
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=7.4e-14 Score=151.16 Aligned_cols=167 Identities=25% Similarity=0.365 Sum_probs=121.7
Q ss_pred cccccCcHHHHHHHHHHhhcccCchhhhHhcCCCC----CCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhh
Q 017161 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP----PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (376)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~----~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~ 239 (376)
...|+|++.+++.+...+.. ...|+.. ...+||+||+|||||++|+++|..+ +.++++++++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRR--------SRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHH--------HHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 34589999999999999975 2333322 2468999999999999999999976 4679999998875
Q ss_pred Hh-----hhchhhHH-----HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC------
Q 017161 240 QK-----YVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ 303 (376)
Q Consensus 240 ~~-----~~g~~~~~-----~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------ 303 (376)
.. .+|..... -..+....+....++|+|||++.+ ++.+++.++++++.-.-.+
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceEE
Confidence 43 22221111 112333344555689999999988 7889999999987532111
Q ss_pred CCCCeEEEEEeCCC-------------------------CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 304 ARGNIKVLMATNRP-------------------------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 304 ~~~~v~VI~tTn~~-------------------------~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
+-.+++||+|||.. ..+.|+|+. |+|.++.|.+++.+....|++.++..
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 12357799999972 234578888 99999999999999999999877754
No 125
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=3e-14 Score=142.22 Aligned_cols=183 Identities=15% Similarity=0.201 Sum_probs=125.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEE------
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR------ 232 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~------ 232 (376)
.+++++.+|++|+|++.+++.|+.++.. | +.+..+|||||||||||++|+++|+.+.+.-..
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 4578889999999999999999998874 2 345679999999999999999999988652100
Q ss_pred ----Eechh------hhH-------hhhc---hhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHH
Q 017161 233 ----VIGSE------LVQ-------KYVG---EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (376)
Q Consensus 233 ----v~~~e------l~~-------~~~g---~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~ 288 (376)
-.|.. +.. .+-+ .+...++++.+.+. .....|+||||+|.+ +...
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-----------~~~~ 143 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML-----------SIAA 143 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-----------CHHH
Confidence 00000 000 0011 11344555544442 123459999999998 4445
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHH
Q 017161 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (376)
Q Consensus 289 ~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA 367 (376)
++.++..++. +...+++|++|+.+..+.+++++ |+ ..++|..++.++...+++..++..+.. .+..++.|+
T Consensus 144 ~~~LLk~LEe-----p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 144 FNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred HHHHHHHHhc-----CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5555555543 34567777777778888888888 77 478999999999888888887655432 333567777
Q ss_pred HHCCC
Q 017161 368 RLCPN 372 (376)
Q Consensus 368 ~~t~g 372 (376)
..+.|
T Consensus 216 ~~s~g 220 (397)
T PRK14955 216 RKAQG 220 (397)
T ss_pred HHcCC
Confidence 77776
No 126
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.55 E-value=1.4e-13 Score=126.39 Aligned_cols=169 Identities=23% Similarity=0.324 Sum_probs=122.8
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEe
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~ 234 (376)
.+....++.+++++|.+.+++.|.+....++. | .|..++||||++|||||+++|++.+++ +..++.|.
T Consensus 17 ~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~ 87 (249)
T PF05673_consen 17 PIKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS 87 (249)
T ss_pred ecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC
Confidence 34556678999999999999999998876433 3 477899999999999999999999976 56677776
Q ss_pred chhhhHhhhchhhHHHHHHHHHHH-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCC--CCCCCeEEE
Q 017161 235 GSELVQKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DARGNIKVL 311 (376)
Q Consensus 235 ~~el~~~~~g~~~~~~~~lf~~a~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~--~~~~~v~VI 311 (376)
..++. .+..++...+ ...+.|||+||+-- . .+....+.|..+| +|- ....||+|.
T Consensus 88 k~~L~---------~l~~l~~~l~~~~~kFIlf~DDLsF--e--------~~d~~yk~LKs~L---eGgle~~P~Nvliy 145 (249)
T PF05673_consen 88 KEDLG---------DLPELLDLLRDRPYKFILFCDDLSF--E--------EGDTEYKALKSVL---EGGLEARPDNVLIY 145 (249)
T ss_pred HHHhc---------cHHHHHHHHhcCCCCEEEEecCCCC--C--------CCcHHHHHHHHHh---cCccccCCCcEEEE
Confidence 65552 2344555544 33567999999642 1 1233334454444 432 346789999
Q ss_pred EEeCCCCCCCc-----------------------cccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC
Q 017161 312 MATNRPDTLDP-----------------------ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER 359 (376)
Q Consensus 312 ~tTn~~~~ld~-----------------------allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~ 359 (376)
+|+|+-..+.. +|-. ||...+.|..|+.++-.+|++.++...++.-
T Consensus 146 ATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 146 ATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred EecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 99997433221 2223 9999999999999999999999998777653
No 127
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=5.1e-14 Score=142.07 Aligned_cols=184 Identities=21% Similarity=0.329 Sum_probs=118.8
Q ss_pred cCCCCCccccc-CcHHH--HHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCceEE
Q 017161 161 EKPDVTYNDVG-GCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIR 232 (376)
Q Consensus 161 ~~~~~~~~di~-G~~~~--~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~ 232 (376)
-.+..+|++.+ |-... ...++++... .| ...+++||||+|||||+|++++++++ +..+++
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~----------~~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~y 165 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKN----------PG--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhC----------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 35667888865 54332 2233333321 11 13469999999999999999999975 456788
Q ss_pred EechhhhHhhhchhh-HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 017161 233 VIGSELVQKYVGEGA-RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (376)
Q Consensus 233 v~~~el~~~~~g~~~-~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI 311 (376)
+++.++...+..... ..+.. |.......+.+|+|||++.+.+ ....+..++.+++.+. ..+..+||
T Consensus 166 i~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~---------~~~~q~elf~~~n~l~---~~~k~iIi 232 (440)
T PRK14088 166 ITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG---------KTGVQTELFHTFNELH---DSGKQIVI 232 (440)
T ss_pred EEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC---------cHHHHHHHHHHHHHHH---HcCCeEEE
Confidence 888887766543321 11222 3322233577999999998854 3345566777776653 22334444
Q ss_pred EEeCCCCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhcc--CCCCCcccHHHHHHHCCC
Q 017161 312 MATNRPDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLARLCPN 372 (376)
Q Consensus 312 ~tTn~~~~---ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~--~~~~~~vdl~~lA~~t~g 372 (376)
++.+.|.. +.+.+.+ ||. ..+.+.+||.+.|..|++..+.. +.++++ .++.||+.+.|
T Consensus 233 tsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~e-v~~~Ia~~~~~ 297 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEE-VLNFVAENVDD 297 (440)
T ss_pred ECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHhcccc
Confidence 44455544 5567887 764 58899999999999999998864 444444 47788887765
No 128
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.3e-14 Score=144.95 Aligned_cols=183 Identities=14% Similarity=0.220 Sum_probs=128.2
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEE------
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR------ 232 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~------ 232 (376)
.+++++.+|++|+|++.+++.|+.++.. | +-+..+||+||+|||||++|+++|+.+.+.-..
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 3567889999999999999999998864 1 445679999999999999999999988662100
Q ss_pred -------Eech---hhhH-------hhhc---hhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHH
Q 017161 233 -------VIGS---ELVQ-------KYVG---EGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (376)
Q Consensus 233 -------v~~~---el~~-------~~~g---~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~ 288 (376)
-.|. .+.. .+-+ .+...++++.+.+. ....-|++|||+|.+ +...
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-----------t~~a 143 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-----------STAA 143 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------CHHH
Confidence 0000 0000 0011 11344555554442 234459999999998 4455
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHH
Q 017161 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (376)
Q Consensus 289 ~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA 367 (376)
++.|+..|++ +...+++|++|+.+..+.++|++ |+ ..++|..++.++...++...++..++. .+..++.|+
T Consensus 144 ~naLLK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 144 FNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6666666554 34567777777878888899988 76 789999999999988888877755532 334577888
Q ss_pred HHCCC
Q 017161 368 RLCPN 372 (376)
Q Consensus 368 ~~t~g 372 (376)
.++.|
T Consensus 216 ~~s~G 220 (620)
T PRK14954 216 RKAQG 220 (620)
T ss_pred HHhCC
Confidence 88876
No 129
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.55 E-value=1.3e-13 Score=115.94 Aligned_cols=140 Identities=43% Similarity=0.667 Sum_probs=97.0
Q ss_pred CcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhchhhH
Q 017161 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGAR 248 (376)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~~~~ 248 (376)
|.+.++..+...+.. ....+++|+||||||||++++.+++.+ +.+++.+++.+...........
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 556666777666643 356789999999999999999999998 8889999888765543322211
Q ss_pred H---HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCC--CCCc
Q 017161 249 M---VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF-DARGNIKVLMATNRPD--TLDP 322 (376)
Q Consensus 249 ~---~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~-~~~~~v~VI~tTn~~~--~ld~ 322 (376)
. ....+..+....+.+|+|||++.+ .......+.+++...... ....++.+|+++|... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSL-----------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhh-----------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 122233444567889999999987 334455566666554321 0136788999999876 6778
Q ss_pred cccCCCCcceEEEec
Q 017161 323 ALLRPGRLDRKVEFG 337 (376)
Q Consensus 323 allr~gRfd~~i~~~ 337 (376)
.+.+ ||+..+.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 8887 998777765
No 130
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.55 E-value=1.8e-14 Score=141.73 Aligned_cols=177 Identities=27% Similarity=0.391 Sum_probs=126.8
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhcCC-CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH-hhhc-hh
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGI-DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVG-EG 246 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~-~~~g-~~ 246 (376)
|+|++++++.+..++...+....+...+.. ..|+++||+||||||||++|+++|..++.+|+.++++++.. .|+| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 999999999999888543222111111110 12589999999999999999999999999999999998875 5777 44
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 017161 247 ARMVRELFQMAR-------------------------------------------------------------------- 258 (376)
Q Consensus 247 ~~~~~~lf~~a~-------------------------------------------------------------------- 258 (376)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 555666665550
Q ss_pred --c--------------------------------------------------------------------CCCeEEEEc
Q 017161 259 --S--------------------------------------------------------------------KKACIVFFD 268 (376)
Q Consensus 259 --~--------------------------------------------------------------------~~psIl~iD 268 (376)
. ....|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 123499999
Q ss_pred CCcccccCCCCCC-CCCCHHHHHHHHHHHHHhc-----CCCCCCCeEEEEEeC----CCCCCCccccCCCCcceEEEecC
Q 017161 269 EVDAIGGARFDDG-VGGDNEVQRTMLEIVNQLD-----GFDARGNIKVLMATN----RPDTLDPALLRPGRLDRKVEFGL 338 (376)
Q Consensus 269 EiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~ld-----~~~~~~~v~VI~tTn----~~~~ld~allr~gRfd~~i~~~~ 338 (376)
|||+++......+ .-+...+|+.|+.+++--. +.-+..++++||+.- .|+.|-|.|.. ||...+.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCC
Confidence 9999987643211 2224558888877765310 112346788888653 46777888887 9999999999
Q ss_pred CCHHHHHHHH
Q 017161 339 PDLESRTQIF 348 (376)
Q Consensus 339 Pd~~~r~~Il 348 (376)
++.++-.+||
T Consensus 335 L~~~dL~~IL 344 (443)
T PRK05201 335 LTEEDFVRIL 344 (443)
T ss_pred CCHHHHHHHh
Confidence 9999999988
No 131
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.55 E-value=6.2e-14 Score=132.32 Aligned_cols=136 Identities=29% Similarity=0.418 Sum_probs=99.4
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh------hhHhhhchhhHHH-H--------------------HH
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE------LVQKYVGEGARMV-R--------------------EL 253 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e------l~~~~~g~~~~~~-~--------------------~l 253 (376)
...+++|+||||||||++|+++|..++.+++.+++.. ++..+.+.....+ . .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3568999999999999999999999999999997754 3333322111111 1 12
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc----CC-------CCCCCeEEEEEeCCC-----
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GF-------DARGNIKVLMATNRP----- 317 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld----~~-------~~~~~v~VI~tTn~~----- 317 (376)
+..+. ...+|+||||+.+ +++++..|+.+|++-. +. ....++.||+|+|..
T Consensus 100 ~~A~~--~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAVR--EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHH--cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22222 2359999999997 7889999999886521 10 122467899999975
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 318 ~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
..++++|++ || ..+.++.|+.++-.+|++.++
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 356889999 98 789999999999999999875
No 132
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=1.4e-13 Score=138.73 Aligned_cols=187 Identities=14% Similarity=0.261 Sum_probs=120.6
Q ss_pred CCCCCccccc-CcHHH--HHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 162 KPDVTYNDVG-GCKEQ--IEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 162 ~~~~~~~di~-G~~~~--~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
.|..+|++.+ |.... ...++++...+-. .+-...++++||||+|+|||+|++++++++ +..++++++
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~-------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ-------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc-------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 5667888864 54433 2344444332100 000123579999999999999999999976 678888888
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
.++...+.......-...|.... ..+.+|+|||++.+.+ ....+..+..+++.+. ..+. .+|+|++
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~---------k~~~qeelf~l~N~l~---~~~k-~IIlts~ 243 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSG---------KGATQEEFFHTFNSLH---TEGK-LIVISST 243 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcC---------ChhhHHHHHHHHHHHH---HCCC-cEEEecC
Confidence 77766543322111112233322 3456999999999843 3445677777777653 1233 4566665
Q ss_pred C-C---CCCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCC
Q 017161 316 R-P---DTLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCP 371 (376)
Q Consensus 316 ~-~---~~ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~ 371 (376)
. | ..++++|++ ||. ..+.+.+|+.++|..|++..+...++. ++.-++.||....
T Consensus 244 ~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~ 304 (445)
T PRK12422 244 CAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALS 304 (445)
T ss_pred CCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Confidence 5 4 457789998 885 789999999999999999988766543 2223555666554
No 133
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=2.2e-13 Score=135.62 Aligned_cols=188 Identities=19% Similarity=0.287 Sum_probs=122.3
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCceEEEechhhh-
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELV- 239 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~v~~~el~- 239 (376)
..+.+.|.++.+++|...+...+. + ..+.+++||||||||||++++.+++++ +..++.+++....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 445689999999999988854211 1 345679999999999999999999876 4678888875432
Q ss_pred ---------Hhhhc--------hhhHHHHHHHHHHH-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcC
Q 017161 240 ---------QKYVG--------EGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (376)
Q Consensus 240 ---------~~~~g--------~~~~~~~~lf~~a~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~ 301 (376)
....+ .....+..+..... ...+.||+|||+|.+.... .. ..+..++..++.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~---~~l~~l~~~~~~ 168 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GN---DVLYSLLRAHEE 168 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------Cc---hHHHHHHHhhhc
Confidence 11111 01222333333333 2456899999999996211 11 334444444332
Q ss_pred CCCCCCeEEEEEeCCC---CCCCccccCCCCcc-eEEEecCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHHCCCCC
Q 017161 302 FDARGNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTM---NCERDIRFELLARLCPNST 374 (376)
Q Consensus 302 ~~~~~~v~VI~tTn~~---~~ld~allr~gRfd-~~i~~~~Pd~~~r~~Il~~~~~~~---~~~~~vdl~~lA~~t~g~s 374 (376)
.. ..++.+|+++|.. +.+++.+.+ ||. ..+.|++++.++..+|++.+++.- ..-.+..++.+++.+.+.+
T Consensus 169 ~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 169 YP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred cC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 21 2378899999875 356777766 553 578999999999999999887531 1112334677777775544
Q ss_pred C
Q 017161 375 G 375 (376)
Q Consensus 375 G 375 (376)
|
T Consensus 246 G 246 (394)
T PRK00411 246 G 246 (394)
T ss_pred C
Confidence 3
No 134
>PRK05642 DNA replication initiation factor; Validated
Probab=99.53 E-value=5.4e-13 Score=123.85 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=101.3
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARF 278 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~ 278 (376)
...++||||+|||||+|++++++++ +...++++..++.... ..+.+..... .+|+|||++.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~--- 111 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAG--- 111 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcC---
Confidence 3679999999999999999999764 5677888887775431 1222333322 5999999998843
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhc
Q 017161 279 DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 279 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~---~ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
.+..+..+..+++.+. ..+..+||+++..|. ...|.|++ ||. ..+.+..|+.+++..+++..+.
T Consensus 112 ------~~~~~~~Lf~l~n~~~---~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 112 ------KADWEEALFHLFNRLR---DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred ------ChHHHHHHHHHHHHHH---hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 3455677888887653 234444554444443 34688998 874 6788899999999999996665
Q ss_pred cCCCC-CcccHHHHHHHCCC
Q 017161 354 TMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 354 ~~~~~-~~vdl~~lA~~t~g 372 (376)
..++. ++.-++.|++++++
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~ 200 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR 200 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC
Confidence 44332 23346778877665
No 135
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=1.3e-13 Score=149.52 Aligned_cols=165 Identities=27% Similarity=0.412 Sum_probs=123.2
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCC----CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~ 240 (376)
..|+|++.+++.+.+.+.. ...|+. |...+||+||+|||||++|+++|..+ +.++++++++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~--------~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRR--------SRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHH--------HhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 4599999999999999976 223332 34569999999999999999999976 56899999988644
Q ss_pred h-----hhchhhHH-----HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC------C
Q 017161 241 K-----YVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------A 304 (376)
Q Consensus 241 ~-----~~g~~~~~-----~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------~ 304 (376)
. .+|..... -+.+....+.+..+||+||||+.+ ++++++.|+++|+.-.-.+ +
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEe
Confidence 2 22222111 123444556667789999999988 8999999999997532111 1
Q ss_pred CCCeEEEEEeCCCC-------------------------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 017161 305 RGNIKVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 305 ~~~v~VI~tTn~~~-------------------------~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
-.+++||+|||... .+.|+|+. |+|.++.|.+++.+...+|+...+.
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 24688999999721 13467777 9999999999999999999987764
No 136
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.3e-13 Score=142.06 Aligned_cols=183 Identities=16% Similarity=0.243 Sum_probs=125.6
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEE-----E
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR-----V 233 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~-----v 233 (376)
.+++.+.+|++|+|++.+++.|+.++.. | +.+..+|||||+|+|||++|+++|+.+++.... +
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4678999999999999999999988864 1 234568999999999999999999987542210 0
Q ss_pred echhhhHhh--------------hchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHH
Q 017161 234 IGSELVQKY--------------VGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (376)
Q Consensus 234 ~~~el~~~~--------------~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (376)
..+.....+ ...+...++++...+.. ....||||||+|.+ +.+.++.|+..
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a~naLLk~ 143 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAAFNALLKT 143 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHHHHHHHHH
Confidence 000100000 01122334554443332 33469999999988 44555666555
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 296 VNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 296 l~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
++. ...++++|++++..+.+.+.+++ |+ ..+.|..++..+...++...+...++. .+..+..|++.+.|
T Consensus 144 LEe-----pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 144 LEE-----PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred Hhc-----CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 543 34567788888888888888887 77 578899999999999998887665543 23346778877776
No 137
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.6e-13 Score=141.77 Aligned_cols=178 Identities=16% Similarity=0.248 Sum_probs=131.9
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------- 229 (376)
+.+++++.+|++|+|++.+++.|+.++.. | ..+..+|||||+|+|||++|+++|..+.+.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 45678899999999999999999999864 1 345679999999999999999999987532
Q ss_pred -----------------eEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHH
Q 017161 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (376)
Q Consensus 230 -----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~ 288 (376)
++.+++.. ..+...++.+...+.. ...-|++|||+|.+ +.+.
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a 137 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAA 137 (614)
T ss_pred CCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHH
Confidence 11121110 0113445666655532 23459999999998 5566
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-cccHHHHH
Q 017161 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLA 367 (376)
Q Consensus 289 ~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~-~vdl~~lA 367 (376)
++.|+..|++ ...++++|++|+....+-++|++ |+ ..++|..++.++...++...+...++.- ...+..|+
T Consensus 138 ~naLLK~LEe-----pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La 209 (614)
T PRK14971 138 FNAFLKTLEE-----PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA 209 (614)
T ss_pred HHHHHHHHhC-----CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7777766664 34567788888888899999998 77 6799999999999999988887766542 23477888
Q ss_pred HHCCC
Q 017161 368 RLCPN 372 (376)
Q Consensus 368 ~~t~g 372 (376)
..+.|
T Consensus 210 ~~s~g 214 (614)
T PRK14971 210 QKADG 214 (614)
T ss_pred HHcCC
Confidence 88776
No 138
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=7.5e-13 Score=138.64 Aligned_cols=183 Identities=25% Similarity=0.364 Sum_probs=121.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCce
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 230 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~~ 230 (376)
..++.+|++++|++..++.+...+.. ..+.+++|+||||||||++|+++++.. +.+|
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 34567899999999999988776643 235679999999999999999998754 4578
Q ss_pred EEEechhhh-------HhhhchhhHH----HHHHHHH----------HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 231 IRVIGSELV-------QKYVGEGARM----VRELFQM----------ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 231 i~v~~~el~-------~~~~g~~~~~----~~~lf~~----------a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
+.+++..+. ...++..... .+..+.. .......+|||||++.+ +...|
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHH
Confidence 999887641 1111211000 0000000 00112359999999988 78888
Q ss_pred HHHHHHHHHhcC------C---------------C--CCCCeEEEEE-eCCCCCCCccccCCCCcceEEEecCCCHHHHH
Q 017161 290 RTMLEIVNQLDG------F---------------D--ARGNIKVLMA-TNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345 (376)
Q Consensus 290 ~~l~~ll~~ld~------~---------------~--~~~~v~VI~t-Tn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~ 345 (376)
..++.++..-.- + . ...++++|++ |+.++.++++|++ ||. .+.|++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 888888865210 0 0 1123555554 5568889999998 885 6789999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHHHHC
Q 017161 346 QIFKIHTRTMNCE-RDIRFELLARLC 370 (376)
Q Consensus 346 ~Il~~~~~~~~~~-~~vdl~~lA~~t 370 (376)
.|++..+...+.. .+.-++.|++.+
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys 385 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT 385 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC
Confidence 9999998865432 222345555543
No 139
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.47 E-value=9.9e-14 Score=133.19 Aligned_cols=142 Identities=19% Similarity=0.234 Sum_probs=107.0
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh--hhchhhH----------HHHHHHHHHHcCCCeEEEE
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--YVGEGAR----------MVRELFQMARSKKACIVFF 267 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~--~~g~~~~----------~~~~lf~~a~~~~psIl~i 267 (376)
...++++|.||||||||++++.+|..++.+++++++...... .+|...- .....+..|.. .+.++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEe
Confidence 346789999999999999999999999999999998776554 3443211 01122333433 4578999
Q ss_pred cCCcccccCCCCCCCCCCHHHHHHHHHHHHH-----hc----CCCCCCCeEEEEEeCCCC------------CCCccccC
Q 017161 268 DEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ-----LD----GFDARGNIKVLMATNRPD------------TLDPALLR 326 (376)
Q Consensus 268 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~-----ld----~~~~~~~v~VI~tTn~~~------------~ld~allr 326 (376)
||+|.. .++++..|..+|+. +. .+....++.||+|+|..+ .++.|++.
T Consensus 141 DEin~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 999987 78888888888873 11 122445788999999854 45789999
Q ss_pred CCCcceEEEecCCCHHHHHHHHHHHhccC
Q 017161 327 PGRLDRKVEFGLPDLESRTQIFKIHTRTM 355 (376)
Q Consensus 327 ~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~ 355 (376)
||-..+.+..|+.+.-.+|+.......
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~~~ 236 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAKGF 236 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhccCC
Confidence 998888999999999999998776443
No 140
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=1.2e-12 Score=132.36 Aligned_cols=154 Identities=17% Similarity=0.286 Sum_probs=109.5
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc-----CCceEEEechhhhHhhhchhhH---HHHHHHHHHHcCCCeEEEEcCCccc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQKYVGEGAR---MVRELFQMARSKKACIVFFDEVDAI 273 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~v~~~el~~~~~g~~~~---~~~~lf~~a~~~~psIl~iDEiD~l 273 (376)
..+++|||++|||||+|++++++++ +..++++++.++...+...... .+..+.... ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999954 4677889988887776543222 222222222 34569999999988
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC----CCCCccccCCCCcc--eEEEecCCCHHHHHHH
Q 017161 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP----DTLDPALLRPGRLD--RKVEFGLPDLESRTQI 347 (376)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~----~~ld~allr~gRfd--~~i~~~~Pd~~~r~~I 347 (376)
.+ ....+..+..+++.+.. .+. .+|+|+|.+ ..+++.|.+ ||. ..+.+.+|+.++|.+|
T Consensus 219 ~~---------k~~~~e~lf~l~N~~~~---~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 219 SY---------KEKTNEIFFTIFNNFIE---NDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred cC---------CHHHHHHHHHHHHHHHH---cCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 43 45677888888887642 222 466676653 346788888 885 5888999999999999
Q ss_pred HHHHhccCCC---CCcccHHHHHHHCCC
Q 017161 348 FKIHTRTMNC---ERDIRFELLARLCPN 372 (376)
Q Consensus 348 l~~~~~~~~~---~~~vdl~~lA~~t~g 372 (376)
++..++..++ -++.-++.||..+.|
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~g 311 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSD 311 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCC
Confidence 9999876543 123346777777665
No 141
>PRK06620 hypothetical protein; Validated
Probab=99.47 E-value=7.4e-13 Score=121.26 Aligned_cols=164 Identities=18% Similarity=0.299 Sum_probs=104.9
Q ss_pred ccCCCCCccccc-Cc--HHHHHHHHHHhhcccCchhhhHhcCCCC-CCceeeecCCCChHHHHHHHHHHhcCCceEEEec
Q 017161 160 EEKPDVTYNDVG-GC--KEQIEKMREVVELPMLHPEKFVKLGIDP-PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (376)
Q Consensus 160 ~~~~~~~~~di~-G~--~~~~~~l~~~i~~~l~~~~~~~~~g~~~-~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~ 235 (376)
...+..+|++++ |- ..+...++++... ++..+ ...++||||||||||||++++++..+..++. .
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~ 75 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--D 75 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--h
Confidence 345566777753 32 3455555555432 22223 2679999999999999999999987753322 1
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
... . ...+ ....+++|||||.+ . +..+..+++.+. ..+..++|+++.
T Consensus 76 ~~~-----~------~~~~-----~~~d~lliDdi~~~-----------~---~~~lf~l~N~~~---e~g~~ilits~~ 122 (214)
T PRK06620 76 IFF-----N------EEIL-----EKYNAFIIEDIENW-----------Q---EPALLHIFNIIN---EKQKYLLLTSSD 122 (214)
T ss_pred hhh-----c------hhHH-----hcCCEEEEeccccc-----------h---HHHHHHHHHHHH---hcCCEEEEEcCC
Confidence 110 0 1111 12359999999954 1 135666666654 345566666665
Q ss_pred CCCC--CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccC--CCCCcccHHHHHHHCCC
Q 017161 316 RPDT--LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTM--NCERDIRFELLARLCPN 372 (376)
Q Consensus 316 ~~~~--ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~~--~~~~~vdl~~lA~~t~g 372 (376)
.|.. + |+|++ |+. ..+.+..|+.+.+..+++.++... .++++ -++.|+++++|
T Consensus 123 ~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~e-v~~~L~~~~~~ 181 (214)
T PRK06620 123 KSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQ-IIDFLLVNLPR 181 (214)
T ss_pred Cccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHccC
Confidence 5543 5 88888 875 379999999999999998887644 34333 46778877765
No 142
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.46 E-value=2e-13 Score=138.14 Aligned_cols=182 Identities=20% Similarity=0.291 Sum_probs=136.7
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceE-----EEe
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI-----RVI 234 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i-----~v~ 234 (376)
.++++.+|++++|++.+...|+.++.. -+-..++||.||.|||||++||.+|..+++.-- +..
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 467889999999999999999999976 244568999999999999999999998866531 111
Q ss_pred c---hhhhHh----------hhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 017161 235 G---SELVQK----------YVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (376)
Q Consensus 235 ~---~el~~~----------~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (376)
| -++... -...+-..+|++.+.+. ...+-|++|||+|.+ +.... ..||.
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~af---NALLK 141 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAF---NALLK 141 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHH---HHHhc
Confidence 1 111110 11223445677766654 245569999999998 44444 44455
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCC
Q 017161 298 QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLARLCPN 372 (376)
Q Consensus 298 ~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~-~vdl~~lA~~t~g 372 (376)
.++ .+..+|++|++|..+..+++.+++ |+ ..+.|...+.++....|...+.+-++.- +-.+..||+..+|
T Consensus 142 TLE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 142 TLE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred ccc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 444 467899999999999999999999 88 6788999999999999999998777663 3457788888877
No 143
>PHA02244 ATPase-like protein
Probab=99.46 E-value=1.8e-12 Score=126.01 Aligned_cols=131 Identities=22% Similarity=0.279 Sum_probs=89.3
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhc---hhhHHH-HHHHHHHHcCCCeEEEEcCCcccccC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVG---EGARMV-RELFQMARSKKACIVFFDEVDAIGGA 276 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g---~~~~~~-~~lf~~a~~~~psIl~iDEiD~l~~~ 276 (376)
...+++|+||||||||++|+++|..++.+|+.++...-.....| ...... ..++...+ ...+++|||++.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a--- 192 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK--KGGLFFIDEIDAS--- 192 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh--cCCEEEEeCcCcC---
Confidence 45679999999999999999999999999999884311111111 111111 12222222 3469999999988
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHh-----cC-CCCCCCeEEEEEeCCC-----------CCCCccccCCCCcceEEEecCC
Q 017161 277 RFDDGVGGDNEVQRTMLEIVNQL-----DG-FDARGNIKVLMATNRP-----------DTLDPALLRPGRLDRKVEFGLP 339 (376)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l-----d~-~~~~~~v~VI~tTn~~-----------~~ld~allr~gRfd~~i~~~~P 339 (376)
+++++..|..++..- ++ +....++.+|+|+|.+ ..++++++. || ..++++.|
T Consensus 193 --------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp 261 (383)
T PHA02244 193 --------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYD 261 (383)
T ss_pred --------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCC
Confidence 677888887777531 11 1234678999999973 567899999 99 57999999
Q ss_pred CHHHHHHHH
Q 017161 340 DLESRTQIF 348 (376)
Q Consensus 340 d~~~r~~Il 348 (376)
+..+ ..|.
T Consensus 262 ~~~E-~~i~ 269 (383)
T PHA02244 262 EKIE-HLIS 269 (383)
T ss_pred cHHH-HHHh
Confidence 8433 3443
No 144
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=2.2e-12 Score=127.01 Aligned_cols=178 Identities=19% Similarity=0.159 Sum_probs=125.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceE----------
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI---------- 231 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i---------- 231 (376)
..+.++++|+|++.+++.|.+++.. | +.+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 5677899999999999999999875 2 45667999999999999999999997632110
Q ss_pred -----EEechh--hhHh-------hh-----ch--------hhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCC
Q 017161 232 -----RVIGSE--LVQK-------YV-----GE--------GARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDD 280 (376)
Q Consensus 232 -----~v~~~e--l~~~-------~~-----g~--------~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~ 280 (376)
.-.|.. .+.. ++ +. ....+|++...+. ...+.|++|||+|.+
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m------- 153 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM------- 153 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-------
Confidence 000000 0000 00 10 1233555544433 356779999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc
Q 017161 281 GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD 360 (376)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~ 360 (376)
+...++.|+..+++ +..++++|++|+.++.+.|.+++ |+ ..+.|++|+.++..+++...... ..+
T Consensus 154 ----~~~aanaLLK~LEe-----pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~ 218 (365)
T PRK07471 154 ----NANAANALLKVLEE-----PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPD 218 (365)
T ss_pred ----CHHHHHHHHHHHhc-----CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCH
Confidence 77788888877765 35677888999999999999988 87 78999999999999999876422 122
Q ss_pred ccHHHHHHHCCCC
Q 017161 361 IRFELLARLCPNS 373 (376)
Q Consensus 361 vdl~~lA~~t~g~ 373 (376)
..+..+++.+.|-
T Consensus 219 ~~~~~l~~~s~Gs 231 (365)
T PRK07471 219 DPRAALAALAEGS 231 (365)
T ss_pred HHHHHHHHHcCCC
Confidence 2235677777774
No 145
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=2.3e-12 Score=124.78 Aligned_cols=169 Identities=10% Similarity=0.193 Sum_probs=120.3
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------eEEEechh
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------FIRVIGSE 237 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~--------~i~v~~~e 237 (376)
+|++|+|++.+++.++.++.. | +.+..+||+||+|+|||++|+++|..+.+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------N-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------C-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 588999999999999999864 1 445678999999999999999999976332 22222110
Q ss_pred hhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 017161 238 LVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~t 313 (376)
.. .-+...++++...+. ....-|++||++|.+ +.+.++.|+..|++ +..++++|.+
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 00 012234566555432 234569999999998 66677777776664 4667888888
Q ss_pred eCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCC
Q 017161 314 TNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPN 372 (376)
Q Consensus 314 Tn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g 372 (376)
|+.++.+-|++++ |+ ..+.|..|+.++...++...... + .......++..+.|
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 8889999999999 77 69999999999988888765542 2 12235566666665
No 146
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=2.7e-12 Score=125.74 Aligned_cols=180 Identities=15% Similarity=0.167 Sum_probs=124.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc-------eEEE-
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------FIRV- 233 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------~i~v- 233 (376)
..+..+++|+|++.+++.|..++.. | +.+..+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 4667889999999999999999975 2 345679999999999999999999987541 1100
Q ss_pred ---echh--hhH-h----h--hc----h---------hhHHHHHHHHHH----HcCCCeEEEEcCCcccccCCCCCCCCC
Q 017161 234 ---IGSE--LVQ-K----Y--VG----E---------GARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGG 284 (376)
Q Consensus 234 ---~~~e--l~~-~----~--~g----~---------~~~~~~~lf~~a----~~~~psIl~iDEiD~l~~~r~~~~~~~ 284 (376)
.|.. .+. . + +. . +...+|.+.... ..+...|++|||+|.+
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------- 153 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------- 153 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------
Confidence 0110 000 0 0 00 0 122344433332 2345569999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHH
Q 017161 285 DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFE 364 (376)
Q Consensus 285 ~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~ 364 (376)
+...++.|+..+++ +..++++|..|+.++.+.|.+++ |+ ..+.|++|+.++...++.......+++ +..+.
T Consensus 154 ~~~aanaLLk~LEE-----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~ 224 (351)
T PRK09112 154 NRNAANAILKTLEE-----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITE 224 (351)
T ss_pred CHHHHHHHHHHHhc-----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHH
Confidence 67777777777764 34567777788889999999998 88 799999999999999998754332221 22356
Q ss_pred HHHHHCCCC
Q 017161 365 LLARLCPNS 373 (376)
Q Consensus 365 ~lA~~t~g~ 373 (376)
.+++.+.|-
T Consensus 225 ~i~~~s~G~ 233 (351)
T PRK09112 225 ALLQRSKGS 233 (351)
T ss_pred HHHHHcCCC
Confidence 777777764
No 147
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.41 E-value=5.6e-12 Score=129.15 Aligned_cols=197 Identities=22% Similarity=0.274 Sum_probs=136.3
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhH----hc-------------------CCCCCCceeeecCC
Q 017161 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFV----KL-------------------GIDPPKGVLCYGPP 211 (376)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~----~~-------------------g~~~~~~vLL~Gpp 211 (376)
..+|++++.+..|.|+.|.+..-+.+..|+.. ..+..|. ++ +-++.+-+||+|||
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~--WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQ--WDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHHHHHHh--hcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 34899999999999999999999999888863 3444443 11 11233568899999
Q ss_pred CChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHH--------cCCCeEEEEcCCcccccCCCCCCCC
Q 017161 212 GTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR--------SKKACIVFFDEVDAIGGARFDDGVG 283 (376)
Q Consensus 212 GtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~--------~~~psIl~iDEiD~l~~~r~~~~~~ 283 (376)
|.||||||+.+|++.|..++.|++++-.. ...++.....|. ...|.+|++||||--
T Consensus 336 GlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---------- 399 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---------- 399 (877)
T ss_pred CCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC----------
Confidence 99999999999999999999999987532 222222222221 267889999999854
Q ss_pred CCHHHHHHHHHHHHH----hcCCCCC------------CCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHH
Q 017161 284 GDNEVQRTMLEIVNQ----LDGFDAR------------GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQI 347 (376)
Q Consensus 284 ~~~~~~~~l~~ll~~----ld~~~~~------------~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~I 347 (376)
.....++++.++.. ..|-... =...|||.+|... -|+|+.---|..++.|.+|...-..+-
T Consensus 400 -~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~R 476 (877)
T KOG1969|consen 400 -PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVER 476 (877)
T ss_pred -cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHH
Confidence 46667777777762 1111110 0245999999543 577763325888999999999888888
Q ss_pred HHHHhccCCCCCc-ccHHHHHHHCCC
Q 017161 348 FKIHTRTMNCERD-IRFELLARLCPN 372 (376)
Q Consensus 348 l~~~~~~~~~~~~-vdl~~lA~~t~g 372 (376)
|+..+..-++.-+ -.+..|+.+|.+
T Consensus 477 L~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 477 LNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred HHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 8887766555422 235555555543
No 148
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.41 E-value=3.8e-12 Score=114.06 Aligned_cols=146 Identities=22% Similarity=0.280 Sum_probs=103.2
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCc------------------------eEEEechhhhHhhhchhhHHHHHHHH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------------------------FIRVIGSELVQKYVGEGARMVRELFQ 255 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~------------------------~i~v~~~el~~~~~g~~~~~~~~lf~ 255 (376)
+.+..+|||||+|+|||++|+++++.+... +..+.... . .-+...++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 345679999999999999999999987432 11111100 0 012245555555
Q ss_pred HHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcc
Q 017161 256 MARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLD 331 (376)
Q Consensus 256 ~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd 331 (376)
.+.. ....|++|||+|.+ +...++.|+..++. ...++.+|++|+.+..+.+++++ |+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~i~s--r~- 147 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLEE-----PPPNTLFILITPSPEKLLPTIRS--RC- 147 (188)
T ss_pred HHccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhChHHHHh--hc-
Confidence 5543 34569999999998 55556666655543 34567788888888999999998 77
Q ss_pred eEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCC
Q 017161 332 RKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNST 374 (376)
Q Consensus 332 ~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~s 374 (376)
..+.|++|+.++...++... +++ +..++.|+..+.|--
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGGSP 185 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCCCc
Confidence 68999999999999998876 343 345888999988754
No 149
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.40 E-value=5.7e-13 Score=129.35 Aligned_cols=162 Identities=23% Similarity=0.365 Sum_probs=108.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-------CC--ceEE
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DA--CFIR 232 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-------~~--~~i~ 232 (376)
+.+..|.+|+|++++++.+.-+... ....++||+|+||||||++|+++|..+ +. .+..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 3567899999999999988754422 112589999999999999999999987 22 2221
Q ss_pred Eech---------hhhHh---------------hhch---------hhHHH-HHHHHHHHcCCCeEEEEcCCcccccCCC
Q 017161 233 VIGS---------ELVQK---------------YVGE---------GARMV-RELFQMARSKKACIVFFDEVDAIGGARF 278 (376)
Q Consensus 233 v~~~---------el~~~---------------~~g~---------~~~~~-~~lf~~a~~~~psIl~iDEiD~l~~~r~ 278 (376)
+.+. ++... .+|. +...+ ...+..| ...+||+||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl----- 140 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLL----- 140 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhC-----
Confidence 1111 00000 1110 00000 0011111 1249999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCCC-CCCccccCCCCcceEEEecCCCH-HHHHHHH
Q 017161 279 DDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPDL-ESRTQIF 348 (376)
Q Consensus 279 ~~~~~~~~~~~~~l~~ll~~l------d~~--~~~~~v~VI~tTn~~~-~ld~allr~gRfd~~i~~~~Pd~-~~r~~Il 348 (376)
++..+..|.+.+++- +|. ....++++|+|+|..+ .+.++++. ||...+.++.|.. ++|.+|+
T Consensus 141 ------~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il 212 (334)
T PRK13407 141 ------EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVI 212 (334)
T ss_pred ------CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 788899999988753 221 1234688888888754 58899999 9999999998866 8999999
Q ss_pred HHHh
Q 017161 349 KIHT 352 (376)
Q Consensus 349 ~~~~ 352 (376)
....
T Consensus 213 ~~~~ 216 (334)
T PRK13407 213 RRRD 216 (334)
T ss_pred HHhh
Confidence 8754
No 150
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.39 E-value=4.1e-12 Score=123.84 Aligned_cols=151 Identities=30% Similarity=0.348 Sum_probs=107.9
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh--hhchhh
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--YVGEGA 247 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~--~~g~~~ 247 (376)
+.|.++++..+..++. ..+++||.||||||||++|+++|..++.+|+++.+...... ..|...
T Consensus 26 ~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 6677777766665554 35789999999999999999999999999999998754322 222211
Q ss_pred HHHH------------HHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc------C-CCCCCCe
Q 017161 248 RMVR------------ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------G-FDARGNI 308 (376)
Q Consensus 248 ~~~~------------~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld------~-~~~~~~v 308 (376)
-... -+|.... +|+++|||+.. ++.++..|++.|++.. . +.-....
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f 155 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPF 155 (329)
T ss_pred HhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCC
Confidence 1100 0111111 49999999987 7899999999998732 2 2344678
Q ss_pred EEEEEeC-----CCCCCCccccCCCCcceEEEecCC-CHHHHHHHHHHHh
Q 017161 309 KVLMATN-----RPDTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHT 352 (376)
Q Consensus 309 ~VI~tTn-----~~~~ld~allr~gRfd~~i~~~~P-d~~~r~~Il~~~~ 352 (376)
+||+|+| ....++.++++ ||...+.++.| +..+...++....
T Consensus 156 ~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 156 IVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCc
Confidence 8889989 44678999999 99999999999 4555555554443
No 151
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.38 E-value=8.7e-12 Score=122.93 Aligned_cols=153 Identities=24% Similarity=0.383 Sum_probs=108.7
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc-----CCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCccccc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 275 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~ 275 (376)
+-..++||||.|+|||+|++|++++. +..++.+....+...++......-.+-|..-. .-.+++||||+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45679999999999999999999976 44678888888877776654443334455554 446999999999965
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC-CCCC---CCccccCCCCcce--EEEecCCCHHHHHHHHH
Q 017161 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN-RPDT---LDPALLRPGRLDR--KVEFGLPDLESRTQIFK 349 (376)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn-~~~~---ld~allr~gRfd~--~i~~~~Pd~~~r~~Il~ 349 (376)
....+..++.+++.+. ..++ .||.|+. .|.. +.|.|++ ||.. .+.+.+|+.+.|..||+
T Consensus 190 ---------k~~~qeefFh~FN~l~---~~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 190 ---------KERTQEEFFHTFNALL---ENGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ---------ChhHHHHHHHHHHHHH---hcCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHH
Confidence 4455778888887764 2334 4555554 4544 5588998 8865 88899999999999999
Q ss_pred HHhccCCCC-CcccHHHHHHHC
Q 017161 350 IHTRTMNCE-RDIRFELLARLC 370 (376)
Q Consensus 350 ~~~~~~~~~-~~vdl~~lA~~t 370 (376)
......++. ++.-+..||...
T Consensus 255 kka~~~~~~i~~ev~~~la~~~ 276 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRL 276 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHh
Confidence 866554443 222345555543
No 152
>PRK09087 hypothetical protein; Validated
Probab=99.37 E-value=5e-12 Score=116.75 Aligned_cols=168 Identities=21% Similarity=0.224 Sum_probs=105.1
Q ss_pred ccccCCCCCcccccC---cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 158 TVEEKPDVTYNDVGG---CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 158 ~~~~~~~~~~~di~G---~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
.+...+..+|++++. ...+...++++. + .+...++||||+|||||||+++++...+..+ ++
T Consensus 11 ~~~~~~~~~~~~Fi~~~~N~~a~~~l~~~~-------------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~ 74 (226)
T PRK09087 11 NFSHDPAYGRDDLLVTESNRAAVSLVDHWP-------------N-WPSPVVVLAGPVGSGKTHLASIWREKSDALL--IH 74 (226)
T ss_pred CCCCCCCCChhceeecCchHHHHHHHHhcc-------------c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCEE--ec
Confidence 344556678888763 233333322211 1 1234599999999999999999998876543 33
Q ss_pred chhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 017161 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (376)
Q Consensus 235 ~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT 314 (376)
...+...+ +..... .+|+|||++.+.. + +..+..+++.+. ..+..+||+++
T Consensus 75 ~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~---------~---~~~lf~l~n~~~---~~g~~ilits~ 125 (226)
T PRK09087 75 PNEIGSDA-----------ANAAAE---GPVLIEDIDAGGF---------D---ETGLFHLINSVR---QAGTSLLMTSR 125 (226)
T ss_pred HHHcchHH-----------HHhhhc---CeEEEECCCCCCC---------C---HHHHHHHHHHHH---hCCCeEEEECC
Confidence 33322211 111111 3899999997621 1 355777776654 23444444444
Q ss_pred CCCC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 315 NRPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 315 n~~~---~ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
..|. ...+.|++ ||. ..+++..|+.+.|.+|++.++...++. ++.-++.|++++++
T Consensus 126 ~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 126 LWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred CChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence 4443 23688988 775 699999999999999999998765443 33346778877664
No 153
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.37 E-value=3.4e-12 Score=115.20 Aligned_cols=158 Identities=18% Similarity=0.272 Sum_probs=107.6
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC-----ceE
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-----CFI 231 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~-----~~i 231 (376)
.|++++++..+.||+|.++.++.+.-+... |- -.+++|.|||||||||.+.++|+++-. .++
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~-----------gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKE-----------GN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHc-----------CC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 499999999999999999999999877764 32 347999999999999999999998622 334
Q ss_pred EEechhhhHhhhchhhHHHHHH---HHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 017161 232 RVIGSELVQKYVGEGARMVREL---FQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (376)
Q Consensus 232 ~v~~~el~~~~~g~~~~~~~~l---f~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 304 (376)
.+++++- .+-..+|.- |..-+- +...||++||.|++ ....|+.|-.-++..
T Consensus 83 ELNASde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiy----- 140 (333)
T KOG0991|consen 83 ELNASDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIY----- 140 (333)
T ss_pred hccCccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHH-----
Confidence 5555442 122333332 332221 33459999999998 455677776666553
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 305 ~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
.....+..++|..+.+-..+.+ |+ -.+.|...+..+...-+....
T Consensus 141 S~ttRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~ 185 (333)
T KOG0991|consen 141 SNTTRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVA 185 (333)
T ss_pred cccchhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHH
Confidence 3445688899988887777776 66 344455555555444444333
No 154
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.2e-11 Score=129.40 Aligned_cols=129 Identities=26% Similarity=0.416 Sum_probs=101.2
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCC---CCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH--
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ-- 240 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~---~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~-- 240 (376)
.|+|+++++..|-++|... +.|+ ++.-.++|.||.|+|||-||+++|..+ ...|++++++++.+
T Consensus 563 ~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 4999999999999999873 3233 356679999999999999999999976 56799999998644
Q ss_pred hhhchh-----hHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC------CCeE
Q 017161 241 KYVGEG-----ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR------GNIK 309 (376)
Q Consensus 241 ~~~g~~-----~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~------~~v~ 309 (376)
+..|.. ......+.+..+..+.+||+|||||.. ++.++..|+++++...-.+.. .|++
T Consensus 635 kligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred hccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 222221 223456778888888999999999997 899999999999875433333 4799
Q ss_pred EEEEeCC
Q 017161 310 VLMATNR 316 (376)
Q Consensus 310 VI~tTn~ 316 (376)
||+|+|.
T Consensus 704 ~IMTsn~ 710 (898)
T KOG1051|consen 704 FIMTSNV 710 (898)
T ss_pred EEEeccc
Confidence 9999884
No 155
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=1.9e-11 Score=118.17 Aligned_cols=174 Identities=17% Similarity=0.226 Sum_probs=122.8
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCce---------------
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF--------------- 230 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~--------------- 230 (376)
.|++|+|++.+++.++.++.. | +-+..+||+||+|+||+++|.++|+.+.+.-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 578999999999999999975 2 3467899999999999999999999763221
Q ss_pred ---EEEechhhh-H-----h---hhc--------hhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCH
Q 017161 231 ---IRVIGSELV-Q-----K---YVG--------EGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDN 286 (376)
Q Consensus 231 ---i~v~~~el~-~-----~---~~g--------~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~ 286 (376)
+.+...... . . ..| -....+|++.+.+.. ....|++||++|.+ +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 111110000 0 0 000 011245565555432 44579999999998 67
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 017161 287 EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELL 366 (376)
Q Consensus 287 ~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~l 366 (376)
..++.|+..|++ +. +.++|.+|+.++.|-|.+++ |+ ..+.|+.|+.++..++|......-. .+.+...+
T Consensus 139 ~aaNaLLK~LEE-----Pp-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l 207 (314)
T PRK07399 139 AAANALLKTLEE-----PG-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPEL 207 (314)
T ss_pred HHHHHHHHHHhC-----CC-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHH
Confidence 778888888775 33 56788888999999999999 87 8899999999999999987643211 12234677
Q ss_pred HHHCCCC
Q 017161 367 ARLCPNS 373 (376)
Q Consensus 367 A~~t~g~ 373 (376)
+..+.|-
T Consensus 208 ~~~a~Gs 214 (314)
T PRK07399 208 LALAQGS 214 (314)
T ss_pred HHHcCCC
Confidence 7777764
No 156
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.34 E-value=4.9e-12 Score=123.20 Aligned_cols=165 Identities=21% Similarity=0.279 Sum_probs=110.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC-------CceEEEe
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-------ACFIRVI 234 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~-------~~~i~v~ 234 (376)
.+...|.+|+|+++.+..|.-.+.. +...++||.|++|||||++|++++..+. .+|....
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 5567899999999999998877765 2346899999999999999999988652 2332000
Q ss_pred ------chhhhHhh-------------------hchhhHH------HHHHHHHHH---------cCCCeEEEEcCCcccc
Q 017161 235 ------GSELVQKY-------------------VGEGARM------VRELFQMAR---------SKKACIVFFDEVDAIG 274 (376)
Q Consensus 235 ------~~el~~~~-------------------~g~~~~~------~~~lf~~a~---------~~~psIl~iDEiD~l~ 274 (376)
++++.... .|.++.. +...|.... .....+||+||++.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 00011000 0111111 011111110 111349999999998
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHh------cCCC--CCCCeEEEEEeCCCC-CCCccccCCCCcceEEEecCCC-HHHH
Q 017161 275 GARFDDGVGGDNEVQRTMLEIVNQL------DGFD--ARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPD-LESR 344 (376)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~l------d~~~--~~~~v~VI~tTn~~~-~ld~allr~gRfd~~i~~~~Pd-~~~r 344 (376)
++..|..|++.+..- +|.. ...++++|+|.|..+ .+.++++. ||...+.+..|+ .+.+
T Consensus 157 ----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 ----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred ----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 788999999988652 2221 234677888888654 68999999 999999999997 5999
Q ss_pred HHHHHHHh
Q 017161 345 TQIFKIHT 352 (376)
Q Consensus 345 ~~Il~~~~ 352 (376)
.+|++...
T Consensus 225 ~~il~~~~ 232 (350)
T CHL00081 225 VKIVEQRT 232 (350)
T ss_pred HHHHHhhh
Confidence 99998754
No 157
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.33 E-value=1.5e-12 Score=110.62 Aligned_cols=112 Identities=32% Similarity=0.428 Sum_probs=74.8
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh--hhchhhHH-------HHHHHHHHHcCCCeEEEEcCCcccc
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--YVGEGARM-------VRELFQMARSKKACIVFFDEVDAIG 274 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~--~~g~~~~~-------~~~lf~~a~~~~psIl~iDEiD~l~ 274 (376)
+|+|+||||||||++|+.+|..++.+++.+.++..... ..|...-. -..+...++ .+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 48999999999999999999999999999988764321 11111000 000011111 4679999999987
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCC-------C-CCC------CeEEEEEeCCCC----CCCccccCCCCc
Q 017161 275 GARFDDGVGGDNEVQRTMLEIVNQLDGF-------D-ARG------NIKVLMATNRPD----TLDPALLRPGRL 330 (376)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~-------~-~~~------~v~VI~tTn~~~----~ld~allr~gRf 330 (376)
+++++..|+.+++.-... . ... ++.+|+|+|..+ .++++|++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 688888888888642111 0 111 489999999988 89999999 87
No 158
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=2.1e-11 Score=127.15 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=111.8
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEE-E
Q 017161 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR-V 233 (376)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~-v 233 (376)
..+|.+++.|.+++++.|.++.++.++.++... .++..+.+.++|+||||||||++++++|+.++..++. .
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 357999999999999999999999999998651 2233445569999999999999999999988654422 1
Q ss_pred ech---h----------hhHhh--hchhhHHHHHHHHHHH----------cCCCeEEEEcCCcccccCCCCCCCCCCHHH
Q 017161 234 IGS---E----------LVQKY--VGEGARMVRELFQMAR----------SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (376)
Q Consensus 234 ~~~---e----------l~~~~--~g~~~~~~~~lf~~a~----------~~~psIl~iDEiD~l~~~r~~~~~~~~~~~ 288 (376)
+.. . +...+ +......++.++..+. .....|||||||+.++.. ....
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~ 214 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRA 214 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHH
Confidence 110 0 00000 1112233445555443 234569999999987531 2223
Q ss_pred HHHHHH-HHHHhcCCCCCCCeEEEEEeCC-CC--------------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 289 QRTMLE-IVNQLDGFDARGNIKVLMATNR-PD--------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 289 ~~~l~~-ll~~ld~~~~~~~v~VI~tTn~-~~--------------~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
++.++. +.. ..+.+.+|++++. +. .|.+++++..|+ ..|.|.+.+.....+.|+..+
T Consensus 215 lq~lLr~~~~------e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 215 LHEILRWKYV------SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHHHHHHHhh------cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHH
Confidence 333333 221 2344555555542 11 134677753355 589999999999777777766
Q ss_pred cc
Q 017161 353 RT 354 (376)
Q Consensus 353 ~~ 354 (376)
..
T Consensus 288 ~~ 289 (637)
T TIGR00602 288 TI 289 (637)
T ss_pred Hh
Confidence 54
No 159
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.32 E-value=1.7e-11 Score=101.89 Aligned_cols=126 Identities=30% Similarity=0.444 Sum_probs=82.3
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCc---eEEEechhhhHh--------------hhchhhHHHHHHHHHHHcCCCeE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSELVQK--------------YVGEGARMVRELFQMARSKKACI 264 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~---~i~v~~~el~~~--------------~~g~~~~~~~~lf~~a~~~~psI 264 (376)
+..++|+||||||||++++.+|..+... ++.+++...... .........+.++..+....+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999998765 777776654322 12234456678888888877899
Q ss_pred EEEcCCcccccCCCCCCCCCCHHHHHHHHHH--HHHhcCCCCCCCeEEEEEeCC-CCCCCccccCCCCcceEEEecCC
Q 017161 265 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEI--VNQLDGFDARGNIKVLMATNR-PDTLDPALLRPGRLDRKVEFGLP 339 (376)
Q Consensus 265 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l--l~~ld~~~~~~~v~VI~tTn~-~~~ld~allr~gRfd~~i~~~~P 339 (376)
|++||++.+... ......... ...........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDA----------EQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCH----------HHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999998532 111211110 000001123456788999996 3333444444 88888877654
No 160
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.7e-11 Score=118.46 Aligned_cols=149 Identities=23% Similarity=0.374 Sum_probs=107.0
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC---------------------
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--------------------- 227 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~--------------------- 227 (376)
++.|.+.+...+..++... + +.+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 5677888888888877631 1 2233699999999999999999999875
Q ss_pred ---CceEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 017161 228 ---ACFIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (376)
Q Consensus 228 ---~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 300 (376)
..++.++.++..... .....++++-..... +..-|++|||+|.+ +.+.++.+...+.+
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc--
Confidence 356666665543221 123345554444332 34569999999999 66777777777664
Q ss_pred CCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHH
Q 017161 301 GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349 (376)
Q Consensus 301 ~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~ 349 (376)
+..++.+|++||.+..+-+.+++ |+ ..+.|++|+...+....+
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 56788999999999999999999 87 788888766655555444
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.3e-11 Score=127.77 Aligned_cols=172 Identities=25% Similarity=0.362 Sum_probs=136.6
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCce
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACF 230 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~~ 230 (376)
....-.++-++|.++.++++.+.+.. +..++-+|.|+||+|||.++..+|.+. +...
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i 229 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRI 229 (786)
T ss_pred HHhcCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEE
Confidence 34556677899999999999999976 344567899999999999999999864 5677
Q ss_pred EEEechhhhH--hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCe
Q 017161 231 IRVIGSELVQ--KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (376)
Q Consensus 231 i~v~~~el~~--~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 308 (376)
+.++...++. +|-|+.+..++.+........+.||||||||.+.+.....+ + ..+..+.|.-.|. ++.+
T Consensus 230 ~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RGeL 300 (786)
T COG0542 230 YSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RGEL 300 (786)
T ss_pred EEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cCCe
Confidence 8888888764 68999999999999999988899999999999987542211 1 3455566665554 5678
Q ss_pred EEEEEeCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCC
Q 017161 309 KVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNC 357 (376)
Q Consensus 309 ~VI~tTn~~-----~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~ 357 (376)
.+|++|..- =.-|+||-| || ..|.+..|+.++-..||+-.-..+..
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 899988753 245899999 99 78999999999999999866554433
No 162
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.30 E-value=3.1e-11 Score=120.21 Aligned_cols=144 Identities=23% Similarity=0.354 Sum_probs=90.3
Q ss_pred cccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC--ce-----EEEec----
Q 017161 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CF-----IRVIG---- 235 (376)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~-----i~v~~---- 235 (376)
++++.+.+..++.+...+. ..++++|+||||||||++|+.+|..+.. .+ +.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4566677777766655553 3578999999999999999999998743 11 22221
Q ss_pred hhhhHhhhch--h----hHHHHHHHHHHHc--CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHH---------
Q 017161 236 SELVQKYVGE--G----ARMVRELFQMARS--KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ--------- 298 (376)
Q Consensus 236 ~el~~~~~g~--~----~~~~~~lf~~a~~--~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~--------- 298 (376)
.+++..+.-. + ...+.+++..|.. ..|++||||||+.... ..+...++.+++.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhccccccccccce
Confidence 1222222111 1 1123444556654 3578999999988632 2223333444331
Q ss_pred --------hcCCCCCCCeEEEEEeCCCC----CCCccccCCCCcceEEEecC
Q 017161 299 --------LDGFDARGNIKVLMATNRPD----TLDPALLRPGRLDRKVEFGL 338 (376)
Q Consensus 299 --------ld~~~~~~~v~VI~tTn~~~----~ld~allr~gRfd~~i~~~~ 338 (376)
...|.-..|+.||+|+|..+ .+|.||+| ||. .|++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 01244567899999999986 89999999 994 455654
No 163
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.30 E-value=6.7e-12 Score=110.94 Aligned_cols=115 Identities=26% Similarity=0.314 Sum_probs=72.2
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCC----ceEEEechhhhHhhhchhhHHHHHHHHHH----HcCCCeEEEEcCCcc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDA----CFIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDA 272 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~----~~i~v~~~el~~~~~g~~~~~~~~lf~~a----~~~~psIl~iDEiD~ 272 (376)
|-..+||.||+|||||.+|+++|..+.. +++.++++++... ++....+..++..+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3457899999999999999999999986 9999999998761 11111122222111 011112999999999
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCC
Q 017161 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNIKVLMATNRP 317 (376)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------~~~~v~VI~tTn~~ 317 (376)
+.+.......-....+++.|+++++.-.-.+ +-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9432100000001278888888887532111 23579999999964
No 164
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=3.6e-11 Score=116.88 Aligned_cols=148 Identities=21% Similarity=0.271 Sum_probs=103.8
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCc------------------------eEEEechhhhHhhhchhhHHHHHHHH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------------------------FIRVIGSELVQKYVGEGARMVRELFQ 255 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~------------------------~i~v~~~el~~~~~g~~~~~~~~lf~ 255 (376)
+.+..+||+||+|+|||++|+++|..+.+. ++.+...+- .+ .-+...+|++..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 446689999999999999999999977432 111211000 00 012345666555
Q ss_pred HHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcc
Q 017161 256 MAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLD 331 (376)
Q Consensus 256 ~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd 331 (376)
.+. ....-|++||++|.+ +.+.++.|+..|++ +.+++++|++|+.++.|.|.+++ |+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc- 157 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RC- 157 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hc-
Confidence 543 244569999999999 77788888887775 46788999999999999999999 88
Q ss_pred eEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCC
Q 017161 332 RKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPN 372 (376)
Q Consensus 332 ~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g 372 (376)
..+.|++|+.++..+.+...... ..+.+...+++++.|
T Consensus 158 ~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 158 QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 66999999999988888765421 122233455666665
No 165
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=6.1e-11 Score=116.76 Aligned_cols=163 Identities=21% Similarity=0.395 Sum_probs=116.8
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc-----eEEEechhhhHhh
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-----FIRVIGSELVQKY 242 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-----~i~v~~~el~~~~ 242 (376)
+.+.+.++++.++..++...+. | ..|.++++|||||||||.+++.++.++... +++|+|..+...+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--------~-~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--------G-ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--------C-CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 4489999999999988765332 2 345569999999999999999999987433 7899987653321
Q ss_pred ---------------hchh-hHHHHHHHHHHHc-CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 017161 243 ---------------VGEG-ARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (376)
Q Consensus 243 ---------------~g~~-~~~~~~lf~~a~~-~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 305 (376)
.|.+ ......+++.... ....||+|||+|.+.... +..|..|+...... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-----------~~~LY~L~r~~~~~--~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-----------GEVLYSLLRAPGEN--K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-----------chHHHHHHhhcccc--c
Confidence 1111 2223334444333 556799999999996542 16777777655433 5
Q ss_pred CCeEEEEEeCCC---CCCCccccCCCCcc-eEEEecCCCHHHHHHHHHHHhcc
Q 017161 306 GNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 306 ~~v~VI~tTn~~---~~ld~allr~gRfd-~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
.++.+|+.+|.. +.+||.+.+ ++. ..|.|++.+.++...|++...+.
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 678899999985 578888887 443 46899999999999999887753
No 166
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.28 E-value=1.7e-11 Score=119.35 Aligned_cols=158 Identities=23% Similarity=0.267 Sum_probs=104.6
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-------CCceE-------
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DACFI------- 231 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-------~~~~i------- 231 (376)
.|..|+|+++++..|.-.+.. +...+++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 467899999999887655543 224679999999999999999999876 22221
Q ss_pred --EEechhh----------------hH--------hhhchh--hHH--------HHHHHHHHHcCCCeEEEEcCCccccc
Q 017161 232 --RVIGSEL----------------VQ--------KYVGEG--ARM--------VRELFQMARSKKACIVFFDEVDAIGG 275 (376)
Q Consensus 232 --~v~~~el----------------~~--------~~~g~~--~~~--------~~~lf~~a~~~~psIl~iDEiD~l~~ 275 (376)
+.+|... .. ...|.. ... -..++..| ...+||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC--
Confidence 0001100 00 111110 000 00111112 2259999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCCC-CCCccccCCCCcceEEEecCCCH-HHHH
Q 017161 276 ARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLPDL-ESRT 345 (376)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~l------d~~--~~~~~v~VI~tTn~~~-~ld~allr~gRfd~~i~~~~Pd~-~~r~ 345 (376)
++..|..|++++..- +|. ....++++|+|+|..+ .+.++++. ||...+.++.|+. ++|.
T Consensus 144 ---------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 144 ---------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 788899999988652 121 1234678888888654 68999999 9999999999976 8899
Q ss_pred HHHHHHh
Q 017161 346 QIFKIHT 352 (376)
Q Consensus 346 ~Il~~~~ 352 (376)
+|++...
T Consensus 213 eIL~~~~ 219 (337)
T TIGR02030 213 EIVERRT 219 (337)
T ss_pred HHHHhhh
Confidence 9998743
No 167
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=3.2e-11 Score=117.48 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=108.3
Q ss_pred CcccccC-cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc---------------
Q 017161 166 TYNDVGG-CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--------------- 229 (376)
Q Consensus 166 ~~~di~G-~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~--------------- 229 (376)
.|+.|.| ++.+++.|+..+.. -+.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4677877 88899999988864 1456678999999999999999999976322
Q ss_pred ---------eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 017161 230 ---------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 296 (376)
Q Consensus 230 ---------~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 296 (376)
+..+... .. .-+...++++...+. ....-|++|||+|.+ +.+.++.|+..|
T Consensus 71 ~~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 1111110 00 011234555554443 233459999999998 667777777776
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHH
Q 017161 297 NQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 350 (376)
Q Consensus 297 ~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~ 350 (376)
++ +..++++|++|+.+..|.|++++ |+ ..++|++|+.++...+++.
T Consensus 135 EE-----Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE-----PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC-----CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 64 56788888899999999999999 87 7899999999988777754
No 168
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.27 E-value=1.3e-10 Score=105.57 Aligned_cols=170 Identities=21% Similarity=0.304 Sum_probs=122.5
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
+...+++.+.+|+|.+.+++.|.+..+.++. | .|..+|||||..|||||+|+||+.+++ +..++.|+.
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 4456678899999999999999887765322 3 466899999999999999999999987 556777777
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHc-CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcC-C-CCCCCeEEEE
Q 017161 236 SELVQKYVGEGARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG-F-DARGNIKVLM 312 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~-~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~-~-~~~~~v~VI~ 312 (376)
.++.. +-.++...+. ....|||+|++-.= .+......|...| +| + ....||+|.+
T Consensus 122 ~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe----------~gd~~yK~LKs~L---eG~ve~rP~NVl~YA 179 (287)
T COG2607 122 EDLAT---------LPDLVELLRARPEKFILFCDDLSFE----------EGDDAYKALKSAL---EGGVEGRPANVLFYA 179 (287)
T ss_pred HHHhh---------HHHHHHHHhcCCceEEEEecCCCCC----------CCchHHHHHHHHh---cCCcccCCCeEEEEE
Confidence 66632 2344444443 34569999996321 2333444554444 33 2 3456899999
Q ss_pred EeCCCCCCCcc--------------------ccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC
Q 017161 313 ATNRPDTLDPA--------------------LLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER 359 (376)
Q Consensus 313 tTn~~~~ld~a--------------------llr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~ 359 (376)
|+|+-..++.. +--..||...+.|.+++.++-..|+..+++..+++-
T Consensus 180 TSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 180 TSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 99986544321 111249999999999999999999999999998874
No 169
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.26 E-value=1.7e-11 Score=107.98 Aligned_cols=123 Identities=24% Similarity=0.419 Sum_probs=84.9
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHh-----
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----- 241 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~----- 241 (376)
|+|.+..++++++.+... ...+.+|||+|++||||+++|+++.+.. +.+|+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 578888888888888652 2345789999999999999999999965 579999999876433
Q ss_pred hhchhh-------HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCCC----CCCe
Q 017161 242 YVGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDA----RGNI 308 (376)
Q Consensus 242 ~~g~~~-------~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~----~~~v 308 (376)
.+|... ..-..+|..|..+ +||||||+.+ +..+|..|+++|+.-. .... ..++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 233211 1112567777665 9999999999 8899999999998632 1111 2379
Q ss_pred EEEEEeCCC
Q 017161 309 KVLMATNRP 317 (376)
Q Consensus 309 ~VI~tTn~~ 317 (376)
.||++|+..
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 999999963
No 170
>PRK04132 replication factor C small subunit; Provisional
Probab=99.24 E-value=9.2e-11 Score=125.34 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=113.9
Q ss_pred CCceeeec--CCCChHHHHHHHHHHhc-----CCceEEEechhhhHhhhchhhHHHHHHHHHHHcC------CCeEEEEc
Q 017161 202 PKGVLCYG--PPGTGKTLLARAVANRT-----DACFIRVIGSELVQKYVGEGARMVRELFQMARSK------KACIVFFD 268 (376)
Q Consensus 202 ~~~vLL~G--ppGtGKT~LakalA~~l-----~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~------~psIl~iD 268 (376)
.-+-+..| |++.||||+|+++|+++ +..++.+++++... ...++++...+... ...|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 34567779 99999999999999997 56799999987421 23455554433221 23699999
Q ss_pred CCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHH
Q 017161 269 EVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIF 348 (376)
Q Consensus 269 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il 348 (376)
|+|.+ +...|+.|..++++ +.+++.+|++||.+..+.++|++ |+ ..+.|++|+.++....+
T Consensus 638 EaD~L-----------t~~AQnALLk~lEe-----p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 638 EADAL-----------TQDAQQALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred CcccC-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHH
Confidence 99999 67788888888775 35688999999999999999999 87 88999999999999889
Q ss_pred HHHhccCCCC-CcccHHHHHHHCCC
Q 017161 349 KIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 349 ~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
+..+.+.++. .+..+..||+.+.|
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 8887755543 34467888888877
No 171
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.23 E-value=1.6e-11 Score=110.49 Aligned_cols=145 Identities=23% Similarity=0.302 Sum_probs=69.1
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC-----------------
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA----------------- 228 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~----------------- 228 (376)
.|.||.|++.+++.|.-+... ..++||+||||||||++|+++..-+..
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 378999999999998876653 468999999999999999999985410
Q ss_pred -----------ceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 017161 229 -----------CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (376)
Q Consensus 229 -----------~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (376)
+|....-+--....+|.+....-..+..|.. .||||||+-.+ +..+...|.+-++
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef-----------~~~vld~Lr~ple 131 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF-----------DRSVLDALRQPLE 131 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS------------HHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc-----------CHHHHHHHHHHHH
Confidence 1111100000011122211100011222322 39999999887 7777888887776
Q ss_pred HhcC--------CCCCCCeEEEEEeCCC-----------------------CCCCccccCCCCcceEEEecCCCH
Q 017161 298 QLDG--------FDARGNIKVLMATNRP-----------------------DTLDPALLRPGRLDRKVEFGLPDL 341 (376)
Q Consensus 298 ~ld~--------~~~~~~v~VI~tTn~~-----------------------~~ld~allr~gRfd~~i~~~~Pd~ 341 (376)
.-.- +....++.+|+|+|.- ..+.-.|+. |||..+.++..+.
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~ 204 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSY 204 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 5321 1123468899999841 234445555 7777776665543
No 172
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.22 E-value=4.3e-11 Score=126.09 Aligned_cols=157 Identities=22% Similarity=0.302 Sum_probs=106.3
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-------------------
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------------------- 226 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l------------------- 226 (376)
.|.+|+|++.++..|.-+... ....+|||+|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 467899999999877655543 122579999999999999999999887
Q ss_pred ----------------CCceEEEechhhhHhhhchh--hHHH--------HHHHHHHHcCCCeEEEEcCCcccccCCCCC
Q 017161 227 ----------------DACFIRVIGSELVQKYVGEG--ARMV--------RELFQMARSKKACIVFFDEVDAIGGARFDD 280 (376)
Q Consensus 227 ----------------~~~~i~v~~~el~~~~~g~~--~~~~--------~~lf~~a~~~~psIl~iDEiD~l~~~r~~~ 280 (376)
..+|+.+.+.......+|.. ...+ ..++..| ...|||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-------
Confidence 24555554433222222321 0001 0111111 2249999999999
Q ss_pred CCCCCHHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCC-CCCCccccCCCCcceEEEecCCC-HHHHHHHHHH
Q 017161 281 GVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRP-DTLDPALLRPGRLDRKVEFGLPD-LESRTQIFKI 350 (376)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~l------d~~--~~~~~v~VI~tTn~~-~~ld~allr~gRfd~~i~~~~Pd-~~~r~~Il~~ 350 (376)
+...+..|+++++.- +|. ....++.+|+|+|.. ..+.++|+. ||+..+.++.|. .+++.+++..
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 788899999988742 111 123468899999964 368889999 999999998774 5777888765
Q ss_pred H
Q 017161 351 H 351 (376)
Q Consensus 351 ~ 351 (376)
.
T Consensus 213 ~ 213 (633)
T TIGR02442 213 R 213 (633)
T ss_pred H
Confidence 3
No 173
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.22 E-value=2.4e-10 Score=109.04 Aligned_cols=65 Identities=35% Similarity=0.549 Sum_probs=48.8
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC--CceEEEechhh
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSEL 238 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~--~~~i~v~~~el 238 (376)
.-+.++|+.++-+..-=.+.+ -+-|-...+++|+.||||||||.||-++|+++| .||..++++++
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~m--------ik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKM--------IKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred cCCcccchHHHHHhhhHHHHH--------HHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 345688988776654333332 222556789999999999999999999999985 78888887765
No 174
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.21 E-value=1.4e-10 Score=116.58 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=97.0
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEechh-hhHhhhchh
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSE-LVQKYVGEG 246 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~e-l~~~~~g~~ 246 (376)
|+|.+++++.+..++. ...++||+||||||||++|++++..++. +|..+.+.. .....+|..
T Consensus 22 i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 22 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred ccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 7788888877776663 3678999999999999999999997643 344333221 112223321
Q ss_pred -hHHH--HHHHHHHHcC---CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc----CCC-CCCCeEEEEEeC
Q 017161 247 -ARMV--RELFQMARSK---KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GFD-ARGNIKVLMATN 315 (376)
Q Consensus 247 -~~~~--~~lf~~a~~~---~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld----~~~-~~~~v~VI~tTn 315 (376)
-... ...|.....+ ...++|+|||..+ ++..+..|++++++-. +-. .....++++|||
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 0000 1122222211 2349999999876 7889999999997633 111 111234566667
Q ss_pred CCC---CCCccccCCCCcceEEEecCCC-HHHHHHHHHHH
Q 017161 316 RPD---TLDPALLRPGRLDRKVEFGLPD-LESRTQIFKIH 351 (376)
Q Consensus 316 ~~~---~ld~allr~gRfd~~i~~~~Pd-~~~r~~Il~~~ 351 (376)
... ...++++. ||-..+.+++|+ .++-.+|+...
T Consensus 156 ~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 156 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 432 23358888 998899999997 46667888764
No 175
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.21 E-value=2.6e-10 Score=110.20 Aligned_cols=87 Identities=26% Similarity=0.356 Sum_probs=55.6
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC------------CCCCCccccCCCC
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------PDTLDPALLRPGR 329 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~------------~~~ld~allr~gR 329 (376)
|.||||||++.| +-+...-|...++. .-.-+||+|||+ |..++..|+. |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs------~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALES------ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTS------TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcC------CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 669999999998 77777766666542 334568899995 4567778888 7
Q ss_pred cceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 330 LDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 330 fd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+ ..|...+++.++..+|++..++.-++. .+-.++.|++
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ 378 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTK 378 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHH
Confidence 7 788899999999999999999876654 2223444443
No 176
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.20 E-value=3.7e-11 Score=120.43 Aligned_cols=157 Identities=25% Similarity=0.416 Sum_probs=112.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el 238 (376)
....+|++|+|.+.++.++.+.+.. ..+.+..|||.|.+||||..+|+++.+.+ +.||+.++|..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 4457899999999999999888865 44667889999999999999999999865 789999999765
Q ss_pred hHh-----hhc--------hhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCC
Q 017161 239 VQK-----YVG--------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD 303 (376)
Q Consensus 239 ~~~-----~~g--------~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~ 303 (376)
-.. .+| ....--..+|+.|..+ .||||||..+ +...|..|++.|++-. .+.
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecC
Confidence 332 122 1111023456666555 9999999988 7889999999998632 111
Q ss_pred ----CCCCeEEEEEeCCC--C-----CCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 304 ----ARGNIKVLMATNRP--D-----TLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 304 ----~~~~v~VI~tTn~~--~-----~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
-.-+|.||+|||+. + .+-..|.- |+ .++.+..|...+|.+
T Consensus 374 ~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RL-NV~~i~iPPLReR~e 424 (560)
T COG3829 374 GTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RL-NVIPITIPPLRERKE 424 (560)
T ss_pred CCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--ee-ceeeecCCCcccCcc
Confidence 12369999999974 2 22222322 33 367777888777765
No 177
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.17 E-value=5.2e-10 Score=108.82 Aligned_cols=164 Identities=19% Similarity=0.186 Sum_probs=106.9
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCC-CCCceeeecCCCChHHHHHHHHHHhcCC-------ceEEEec----h
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID-PPKGVLCYGPPGTGKTLLARAVANRTDA-------CFIRVIG----S 236 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~-~~~~vLL~GppGtGKT~LakalA~~l~~-------~~i~v~~----~ 236 (376)
++.|+++++.++.+++.... .|.. ..+.++|+||||||||+||+++|+.++. +++.+.. +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 79999999999998887622 2333 3467899999999999999999998865 7787766 4
Q ss_pred hhhHhhhchhhHHHHHHHHHH-----------------------------------------------------------
Q 017161 237 ELVQKYVGEGARMVRELFQMA----------------------------------------------------------- 257 (376)
Q Consensus 237 el~~~~~g~~~~~~~~lf~~a----------------------------------------------------------- 257 (376)
.+....++-....+|..|...
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi 203 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDI 203 (361)
T ss_pred CCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccH
Confidence 332221111111111111000
Q ss_pred ---------------HcC--------------CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc----CC--
Q 017161 258 ---------------RSK--------------KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GF-- 302 (376)
Q Consensus 258 ---------------~~~--------------~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld----~~-- 302 (376)
... ...|+-|+|+.+. +.+.+..|+..+++.. +.
T Consensus 204 ~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~-----------~~~~l~~LL~~~qE~~v~~~~~~~ 272 (361)
T smart00763 204 SELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA-----------DIKFLHPLLTATQEGNIKGTGGFA 272 (361)
T ss_pred HHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC-----------CHHHHHHHhhhhhcceEecCCccc
Confidence 000 1137777777766 6677777777776532 11
Q ss_pred CCCCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCC-CHHHHHHHHHHHhcc
Q 017161 303 DARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLP-DLESRTQIFKIHTRT 354 (376)
Q Consensus 303 ~~~~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~P-d~~~r~~Il~~~~~~ 354 (376)
.-.-+.+||++||.. .....+|++ ||. .+.++.| +..+-.+|.+..+..
T Consensus 273 ~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 273 MIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred ccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 112246788999976 355789999 996 8888877 667888888887754
No 178
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.16 E-value=8.8e-10 Score=102.06 Aligned_cols=185 Identities=14% Similarity=0.210 Sum_probs=132.9
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-C--CceEE
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-D--ACFIR 232 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-~--~~~i~ 232 (376)
++|++++.+.+++.+.+..+....++....- ..-.++++|||+|+||.|.+.++.+++ | ..-.+
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklk 67 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLK 67 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchhee
Confidence 3688999999999999999998888876642 112479999999999999999999875 2 11111
Q ss_pred Eechhh-------------hH--------hhhchhhHH-HHHHHHHHHc---------CCCeEEEEcCCcccccCCCCCC
Q 017161 233 VIGSEL-------------VQ--------KYVGEGARM-VRELFQMARS---------KKACIVFFDEVDAIGGARFDDG 281 (376)
Q Consensus 233 v~~~el-------------~~--------~~~g~~~~~-~~~lf~~a~~---------~~psIl~iDEiD~l~~~r~~~~ 281 (376)
+....+ .+ ...|...+. +.++.....+ ....+++|.|+|.+
T Consensus 68 i~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-------- 139 (351)
T KOG2035|consen 68 IETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-------- 139 (351)
T ss_pred eeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh--------
Confidence 111110 01 112333332 3444444322 22359999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-Cc
Q 017161 282 VGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RD 360 (376)
Q Consensus 282 ~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~ 360 (376)
..+.|..|-.-++.. .+++.+|..+|....+-+++++ |+ ..+.++.|+.++...++...+.+-++. +.
T Consensus 140 ---T~dAQ~aLRRTMEkY-----s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~ 208 (351)
T KOG2035|consen 140 ---TRDAQHALRRTMEKY-----SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPK 208 (351)
T ss_pred ---hHHHHHHHHHHHHHH-----hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcH
Confidence 677888888777764 4678899999999999999999 77 688999999999999999999876665 33
Q ss_pred ccHHHHHHHCCC
Q 017161 361 IRFELLARLCPN 372 (376)
Q Consensus 361 vdl~~lA~~t~g 372 (376)
--+..||+.++|
T Consensus 209 ~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 209 ELLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHHhcc
Confidence 345677777665
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.16 E-value=2.4e-10 Score=100.16 Aligned_cols=134 Identities=25% Similarity=0.387 Sum_probs=91.5
Q ss_pred CcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc----------------------
Q 017161 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------------------- 229 (376)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~---------------------- 229 (376)
|++++++.|...+.. -+.|..+||+||+|+||+++|+++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788889999988875 2456779999999999999999999976221
Q ss_pred -eEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 017161 230 -FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (376)
Q Consensus 230 -~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 304 (376)
++.+....... .-....++.+...+.. ...-|++||++|.+ +.+.++.|+..|++ +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe-----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE-----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS-----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC-----C
Confidence 22222111100 0123455555555432 34569999999999 78889999988885 5
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCC
Q 017161 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 339 (376)
Q Consensus 305 ~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~P 339 (376)
..++.+|++|+.++.|-|.+++ |+ ..+.|+.+
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 6789999999999999999999 87 66666653
No 180
>PRK08116 hypothetical protein; Validated
Probab=99.16 E-value=2.9e-10 Score=107.65 Aligned_cols=130 Identities=23% Similarity=0.301 Sum_probs=84.1
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhch----hhHHHHHHHHHHHcCCCeEEEEcCCccc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE----GARMVRELFQMARSKKACIVFFDEVDAI 273 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~----~~~~~~~lf~~a~~~~psIl~iDEiD~l 273 (376)
.+.+++|+|++|||||+||.++|+++ +.+++.++.++++..+... .......++.... ...+|+|||++..
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 34579999999999999999999975 7788889988877654321 1111223333332 3359999998653
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-CC----CCccccCCCCc---ceEEEecCCCHHHHH
Q 017161 274 GGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-DT----LDPALLRPGRL---DRKVEFGLPDLESRT 345 (376)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~-~~----ld~allr~gRf---d~~i~~~~Pd~~~r~ 345 (376)
. .....+..+..+++... ..+..+|+|||.+ .. ++..+.+ |+ ...+.+.-||. |.
T Consensus 191 ~---------~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~ 253 (268)
T PRK08116 191 R---------DTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RK 253 (268)
T ss_pred C---------CCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hH
Confidence 1 24556777888887642 2334588899874 22 4566666 64 33566666664 44
Q ss_pred HHHH
Q 017161 346 QIFK 349 (376)
Q Consensus 346 ~Il~ 349 (376)
++.+
T Consensus 254 ~~~~ 257 (268)
T PRK08116 254 EIAK 257 (268)
T ss_pred HHHH
Confidence 4443
No 181
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.16 E-value=1.3e-10 Score=113.07 Aligned_cols=151 Identities=25% Similarity=0.319 Sum_probs=102.2
Q ss_pred cccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHh--
Q 017161 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK-- 241 (376)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~-- 241 (376)
+++++|.+..++.+.+.+... ...+.+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 567999999999999988752 2446789999999999999999998765 579999999876321
Q ss_pred ---hhchhh-------HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC-------
Q 017161 242 ---YVGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA------- 304 (376)
Q Consensus 242 ---~~g~~~-------~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~------- 304 (376)
.+|... ......|..+. ...||||||+.+ +...|..|..+++.-. +..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~-~~~~g~~~~~ 138 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATA-----------PMLVQEKLLRVIEYGE-LERVGGSQPL 138 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhC-----------CHHHHHHHHHHHhcCc-EEeCCCCcee
Confidence 122110 00112333333 349999999999 7888999998886522 111
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 305 ~~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
..++.||+||+.. ..+.+.|+. ||. .+.+..|...+|.+
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 1258899988763 345566666 663 34455565555543
No 182
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.9e-10 Score=109.01 Aligned_cols=85 Identities=28% Similarity=0.346 Sum_probs=62.3
Q ss_pred eEEEEcCCcccccCCCCCC-CCCCHHHHHHHHHHHHHh-----cCCCCCCCeEEEEEe----CCCCCCCccccCCCCcce
Q 017161 263 CIVFFDEVDAIGGARFDDG-VGGDNEVQRTMLEIVNQL-----DGFDARGNIKVLMAT----NRPDTLDPALLRPGRLDR 332 (376)
Q Consensus 263 sIl~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~l-----d~~~~~~~v~VI~tT----n~~~~ld~allr~gRfd~ 332 (376)
.||||||||.++.+...++ .-+...+|+-|+-++.-- -|.-...++++|++. ..|++|-|.|.- ||.-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 4999999999987664332 223456788887776431 122234578888875 358888899876 9999
Q ss_pred EEEecCCCHHHHHHHHH
Q 017161 333 KVEFGLPDLESRTQIFK 349 (376)
Q Consensus 333 ~i~~~~Pd~~~r~~Il~ 349 (376)
.+++...+.++-.+||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999998883
No 183
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=9.4e-10 Score=106.51 Aligned_cols=144 Identities=15% Similarity=0.216 Sum_probs=104.5
Q ss_pred cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc-----------------------
Q 017161 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 229 (376)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~----------------------- 229 (376)
+....+.|...+.. -+.+..+||+||+|+||+++|+++|..+.+.
T Consensus 7 ~~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQ------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45566667666653 1446689999999999999999999976331
Q ss_pred -eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 017161 230 -FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (376)
Q Consensus 230 -~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 304 (376)
++.+...+ .+ .-+...+|++.+.+. .+..-|++||++|.+ +.+.++.|+..|++ +
T Consensus 75 D~~~i~p~~--~~--~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE-----P 134 (325)
T PRK06871 75 DFHILEPID--NK--DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE-----P 134 (325)
T ss_pred CEEEEcccc--CC--CCCHHHHHHHHHHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC-----C
Confidence 11111100 00 012345566544443 344569999999999 77788888888775 6
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHH
Q 017161 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH 351 (376)
Q Consensus 305 ~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~ 351 (376)
..++++|.+|+.++.|-|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 135 p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 7889999999999999999999 88 78899999999988888765
No 184
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.15 E-value=1.5e-10 Score=112.84 Aligned_cols=149 Identities=23% Similarity=0.306 Sum_probs=98.7
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh----
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY---- 242 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~---- 242 (376)
|+|.+..++.+.+.+... .....+|||+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 467888888888877651 2345689999999999999999998755 5799999997653221
Q ss_pred -hchhh-------HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CC----CCCCCe
Q 017161 243 -VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GF----DARGNI 308 (376)
Q Consensus 243 -~g~~~-------~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~----~~~~~v 308 (376)
+|... .....+|..|. ..+||||||+.+ +...|..|+.+++.-. .. ....++
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred HhccccccccCcccccCCchhhCC---CCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 11110 00112344443 359999999999 7889999999886532 00 112468
Q ss_pred EEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 309 KVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 309 ~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
.+|++||.. ..+.+.|+. |+. .+.+..|...+|.+
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~e 177 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQE 177 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhh
Confidence 899999863 234455555 553 34566666666544
No 185
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3e-10 Score=107.00 Aligned_cols=128 Identities=25% Similarity=0.353 Sum_probs=86.4
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHh-cCCC-CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH-hhhchh
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVK-LGID-PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGEG 246 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~-~g~~-~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~-~~~g~~ 246 (376)
++|++.+++.|.=+|-...++-..... -.+. ...++||.||+|||||+||+.+|+.++.||...++..|.. .|+|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 889999988776555332111100000 0011 1247999999999999999999999999999999998876 478875
Q ss_pred h-HHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCC---CCCCHHHHHHHHHHHH
Q 017161 247 A-RMVRELFQMARS----KKACIVFFDEVDAIGGARFDDG---VGGDNEVQRTMLEIVN 297 (376)
Q Consensus 247 ~-~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~---~~~~~~~~~~l~~ll~ 297 (376)
. ..+-.+++.|.. ....||+|||||.++.+..+++ .-+...+|+.|+.+++
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiE 201 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIE 201 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHc
Confidence 4 345555555421 2234999999999987654332 1224678888888775
No 186
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.12 E-value=9.9e-11 Score=121.35 Aligned_cols=130 Identities=22% Similarity=0.383 Sum_probs=91.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el 238 (376)
.+..++++++|.+..++++.+.+... ......|||+|++|||||++|++++... +.+|+.++|..+
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 34467899999999999999988752 2346689999999999999999999875 579999999876
Q ss_pred hHhh-----hchhhHH-------HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC--
Q 017161 239 VQKY-----VGEGARM-------VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-- 304 (376)
Q Consensus 239 ~~~~-----~g~~~~~-------~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~-- 304 (376)
.... +|..... ....|..+ ...+||||||+.+ +...|..|+.++..-. +..
T Consensus 259 ~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~-~~~~~ 323 (534)
T TIGR01817 259 SETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGE-FERVG 323 (534)
T ss_pred CHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCc-EEECC
Confidence 3321 1111000 00112222 2359999999999 7889999999886522 111
Q ss_pred -----CCCeEEEEEeCCC
Q 017161 305 -----RGNIKVLMATNRP 317 (376)
Q Consensus 305 -----~~~v~VI~tTn~~ 317 (376)
..++.+|+||+..
T Consensus 324 ~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRD 341 (534)
T ss_pred CCceEeecEEEEEeCCCC
Confidence 1257899998763
No 187
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.12 E-value=1.3e-10 Score=119.57 Aligned_cols=154 Identities=24% Similarity=0.376 Sum_probs=104.1
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHh-----------cCCceEEE
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR-----------TDACFIRV 233 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~-----------l~~~~i~v 233 (376)
.+|++++|.+..++.+++.+... .....+|||+|++||||+++|+++.+. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46889999999999999988641 234568999999999999999999887 36799999
Q ss_pred echhhhHh-----hhchhhH--------HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 017161 234 IGSELVQK-----YVGEGAR--------MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (376)
Q Consensus 234 ~~~el~~~-----~~g~~~~--------~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 300 (376)
+|..+... .+|.... .-..+|+.|.. ..||||||+.+ +...|..|+.+|+.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 99876332 1221110 01124555443 39999999999 7889999999987532
Q ss_pred C--CC----CCCCeEEEEEeCCC--CC-----CCccccCCCCcceEEEecCCCHHHHHH
Q 017161 301 G--FD----ARGNIKVLMATNRP--DT-----LDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 301 ~--~~----~~~~v~VI~tTn~~--~~-----ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
- .. -..++.||++||.. .. +.+.|.. |+ ..+.+..|...+|.+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL-~~~~I~lPPLReR~e 406 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RL-SILRLQLPPLRERVA 406 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hh-cCCeecCCChhhchh
Confidence 1 11 12357899999864 11 2222322 33 245666777766654
No 188
>PRK12377 putative replication protein; Provisional
Probab=99.12 E-value=7.6e-10 Score=103.39 Aligned_cols=101 Identities=23% Similarity=0.250 Sum_probs=69.4
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhchh--hHHHHHHHHHHHcCCCeEEEEcCCcccccC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG--ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~~--~~~~~~lf~~a~~~~psIl~iDEiD~l~~~ 276 (376)
..+++|+||||||||+||.++|+.+ +..++.+...+++......- ......++... ....+|+|||++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-
Confidence 4689999999999999999999976 66778888888776542211 00112233333 3456999999976522
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+...+..+.++++.-. .....+|+|||..
T Consensus 178 --------s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 178 --------TKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred --------CHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 4456778888887643 2335578899964
No 189
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.11 E-value=2.9e-11 Score=100.53 Aligned_cols=107 Identities=28% Similarity=0.404 Sum_probs=63.4
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEech-hhh-Hhhhchh-----hHH----HHHHHHHHHcCCCeEEEEcCCcc
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELV-QKYVGEG-----ARM----VRELFQMARSKKACIVFFDEVDA 272 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~-el~-~~~~g~~-----~~~----~~~lf~~a~~~~psIl~iDEiD~ 272 (376)
++||+|+||+|||++|+++|..++..|.+|.+. ++. ++..|.. ... -.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999999874 332 2222221 000 01112 13999999998
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhc----C--CCCCCCeEEEEEeCCCC-----CCCccccCCCCc
Q 017161 273 IGGARFDDGVGGDNEVQRTMLEIVNQLD----G--FDARGNIKVLMATNRPD-----TLDPALLRPGRL 330 (376)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~ld----~--~~~~~~v~VI~tTn~~~-----~ld~allr~gRf 330 (376)
. .+.+|..+++.+.+-. | +.-.....||+|-|..+ .|+.+++. ||
T Consensus 74 a-----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A-----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C-----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 7 7889999999998742 2 12234688999999865 67778777 77
No 190
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=5.3e-10 Score=108.97 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=96.6
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCce-------------------------EEEechhhh---------------
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACF-------------------------IRVIGSELV--------------- 239 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~-------------------------i~v~~~el~--------------- 239 (376)
+.+..+||+||+|+||+++|+++|..+.+.. ..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5677899999999999999999999764422 111110000
Q ss_pred ---Hh----h-hchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 017161 240 ---QK----Y-VGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (376)
Q Consensus 240 ---~~----~-~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 307 (376)
.+ . ..-....+|++...+. ....-|++||++|.+ +.+..+.|+..|++ +..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLEE-----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCcC
Confidence 00 0 0012234566555543 234459999999999 67778888777764 6788
Q ss_pred eEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHH
Q 017161 308 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH 351 (376)
Q Consensus 308 v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~ 351 (376)
+++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 88 79999999999999888764
No 191
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.11 E-value=5e-10 Score=112.14 Aligned_cols=154 Identities=24% Similarity=0.395 Sum_probs=110.1
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHh
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK 241 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~ 241 (376)
..+.+++|.+..++++++.+.. -.+....|||+|++||||.++|+++.... +.||+.++|..+-..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k-----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK-----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH-----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 4567899999999999999965 12456689999999999999999999866 679999999765332
Q ss_pred -----hhchhh-------HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCCC---
Q 017161 242 -----YVGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDA--- 304 (376)
Q Consensus 242 -----~~g~~~-------~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~--- 304 (376)
.+|... ..-...|+.|..+ .||||||..+ ..+.|..|+..|++-. ....
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 222111 1112356666555 9999999988 7899999999998632 1211
Q ss_pred -CCCeEEEEEeCCC--C-----CCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 305 -RGNIKVLMATNRP--D-----TLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 305 -~~~v~VI~tTn~~--~-----~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
.-+|.||+|||+. + .+-..|.- |+ .++.+..|...+|.+
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~E 319 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKE 319 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHh--hh-ccceecCCcccccch
Confidence 2368999999974 2 22233333 44 477888888877766
No 192
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.10 E-value=2.8e-10 Score=107.27 Aligned_cols=167 Identities=20% Similarity=0.224 Sum_probs=116.8
Q ss_pred CcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceE
Q 017161 152 PSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (376)
Q Consensus 152 ~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i 231 (376)
+.....|++.+++-..+++++.++.+..+.++... ..-.+.|+|||||||||+...+.|..+-.+.
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~- 90 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPH- 90 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCC-
Confidence 34456689999999999999999999999988643 2223899999999999999999999886541
Q ss_pred EEechhhhHh-----hhch-hhHHHHHHHHHHHc-------CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 017161 232 RVIGSELVQK-----YVGE-GARMVRELFQMARS-------KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (376)
Q Consensus 232 ~v~~~el~~~-----~~g~-~~~~~~~lf~~a~~-------~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (376)
....++.. -.|- ..+.--..|..++. ..+..+++||.|++ ....|+.|-+.+..
T Consensus 91 --~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek 157 (360)
T KOG0990|consen 91 --PTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEK 157 (360)
T ss_pred --CchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHH
Confidence 11111111 1111 11122235555553 26679999999998 67788888876655
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 017161 299 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 299 ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
+ ..++.++..+|.+..+.|++++ ||. .+.|.+.+...-...+..++.
T Consensus 158 ~-----t~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 158 Y-----TANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred h-----ccceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHh
Confidence 4 4567788899999999999998 774 445555565555555555553
No 193
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.10 E-value=1.5e-10 Score=114.03 Aligned_cols=154 Identities=23% Similarity=0.343 Sum_probs=105.3
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHh----cCCceEEEechhhh
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR----TDACFIRVIGSELV 239 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~----l~~~~i~v~~~el~ 239 (376)
...+.+++|.+...+++++.+.. -.+...+||++|++||||+++|+++... ...||+.+||..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34677899999999999999875 1234568999999999999999999853 36799999998774
Q ss_pred Hhh-----hch-------hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc-----CC
Q 017161 240 QKY-----VGE-------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GF 302 (376)
Q Consensus 240 ~~~-----~g~-------~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld-----~~ 302 (376)
... +|. ....-..+|+.|..+ +||+|||..+ ..+.|..++.+|+... +-
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCC
Confidence 431 111 111223456666555 9999999998 7889999999998732 10
Q ss_pred -CCCCCeEEEEEeCCC--CCCCc--cccCCCCcceEEEecCCCHHHHH
Q 017161 303 -DARGNIKVLMATNRP--DTLDP--ALLRPGRLDRKVEFGLPDLESRT 345 (376)
Q Consensus 303 -~~~~~v~VI~tTn~~--~~ld~--allr~gRfd~~i~~~~Pd~~~r~ 345 (376)
....+|.+|+|||.. +.+-. .|.+. |+ .+.+.+|...+|.
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~ 253 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERK 253 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhch
Confidence 123468999999852 22222 44431 33 3345555555553
No 194
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.10 E-value=1.8e-10 Score=118.47 Aligned_cols=155 Identities=23% Similarity=0.372 Sum_probs=103.8
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~ 240 (376)
..+|++++|.+..++.+++.+... .....+|||+|++||||+++|+++.+.. +.+|+.++|..+..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 367889999999999999988641 2345689999999999999999999764 67999999976633
Q ss_pred h-----hhchhhH--------HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcC--CCC-
Q 017161 241 K-----YVGEGAR--------MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FDA- 304 (376)
Q Consensus 241 ~-----~~g~~~~--------~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~--~~~- 304 (376)
. .+|.... .-..+|+.|.. ..||||||+.+ +...|..|+.+|+.-.- ...
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCC
Confidence 2 1221100 11234454443 49999999999 88899999999875321 111
Q ss_pred ---CCCeEEEEEeCCC--CCC-----CccccCCCCcceEEEecCCCHHHHHH
Q 017161 305 ---RGNIKVLMATNRP--DTL-----DPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 305 ---~~~v~VI~tTn~~--~~l-----d~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
..++.+|++||.. +.+ .+.|.. |+. .+.+..|...+|.+
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~e 391 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPG 391 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchh
Confidence 1256899999864 222 223332 332 35566666666554
No 195
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=1.3e-09 Score=106.23 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=110.3
Q ss_pred cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc-----------------------
Q 017161 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 229 (376)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~----------------------- 229 (376)
+....+++...+.. -+.+..+||+||+|+||+++|.++|..+-+.
T Consensus 7 l~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (334)
T PRK07993 7 LRPDYEQLVGSYQA------------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_pred ChHHHHHHHHHHHc------------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 34556666666543 2456789999999999999999999976321
Q ss_pred -eEEEechhhhHhhhchhhHHHHHHHHHH----HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 017161 230 -FIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (376)
Q Consensus 230 -~i~v~~~el~~~~~g~~~~~~~~lf~~a----~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 304 (376)
+..+.. +-... .-+...+|++.+.+ ..+..-|++||++|.+ +.+.++.|+..|++ +
T Consensus 75 D~~~i~p-~~~~~--~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 135 (334)
T PRK07993 75 DYYTLTP-EKGKS--SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE-----P 135 (334)
T ss_pred CEEEEec-ccccc--cCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC-----C
Confidence 111111 00000 01233455554443 3345569999999999 77788888888775 6
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 017161 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 373 (376)
Q Consensus 305 ~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~ 373 (376)
..++++|.+|+.++.|-|.+++ |+ ..+.|++|+.++..+.|.... +.+. .....+++.+.|-
T Consensus 136 p~~t~fiL~t~~~~~lLpTIrS--RC-q~~~~~~~~~~~~~~~L~~~~---~~~~-~~a~~~~~la~G~ 197 (334)
T PRK07993 136 PENTWFFLACREPARLLATLRS--RC-RLHYLAPPPEQYALTWLSREV---TMSQ-DALLAALRLSAGA 197 (334)
T ss_pred CCCeEEEEEECChhhChHHHHh--cc-ccccCCCCCHHHHHHHHHHcc---CCCH-HHHHHHHHHcCCC
Confidence 7889999999999999999999 88 468999999988888775431 2222 2234556666653
No 196
>PRK08181 transposase; Validated
Probab=99.09 E-value=1.3e-09 Score=102.98 Aligned_cols=101 Identities=22% Similarity=0.335 Sum_probs=71.3
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhchh-hHHHHHHHHHHHcCCCeEEEEcCCcccccC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~~-~~~~~~lf~~a~~~~psIl~iDEiD~l~~~ 276 (376)
...+++|+||||||||+||.++++++ +..++.+...+++....... .......+... ..+.+|+|||++....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC-
Confidence 35689999999999999999999754 67788888888877653211 11223334333 3456999999987632
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+...+..++++++...+ . ..+|+|||.+
T Consensus 182 --------~~~~~~~Lf~lin~R~~---~--~s~IiTSN~~ 209 (269)
T PRK08181 182 --------DQAETSVLFELISARYE---R--RSILITANQP 209 (269)
T ss_pred --------CHHHHHHHHHHHHHHHh---C--CCEEEEcCCC
Confidence 45667888899986532 1 2488899975
No 197
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.09 E-value=4.2e-10 Score=116.14 Aligned_cols=156 Identities=21% Similarity=0.339 Sum_probs=105.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el 238 (376)
....+|++++|.+..++.+.+.+... ......|||+|++||||+++|+++.... ..+|+.++|..+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 45678999999999998888877541 1235579999999999999999997754 579999999876
Q ss_pred hHh-----hhchhh-------HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCC-
Q 017161 239 VQK-----YVGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD- 303 (376)
Q Consensus 239 ~~~-----~~g~~~-------~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~- 303 (376)
... .+|... .....+|+.|.. ..||||||+.+ +...|..|+++++.-. ...
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCC
Confidence 432 122111 001123444433 48999999999 7889999999887521 111
Q ss_pred ---CCCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHH
Q 017161 304 ---ARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRT 345 (376)
Q Consensus 304 ---~~~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~ 345 (376)
...++.||+||+.. ..+.+.|.. |+. .+.+..|...+|.
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~ 381 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRP 381 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccCh
Confidence 12357899988764 234455555 553 3666777776665
No 198
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.09 E-value=4.1e-10 Score=115.04 Aligned_cols=148 Identities=23% Similarity=0.313 Sum_probs=95.3
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC----------------
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---------------- 227 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~---------------- 227 (376)
...|++|.|+..+++.+.-.+ ....+++|+||||||||+++++++..+.
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 347899999998876655443 3456899999999999999999997431
Q ss_pred ------------CceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHH
Q 017161 228 ------------ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEI 295 (376)
Q Consensus 228 ------------~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 295 (376)
.||.....+......+|.+...-...+..|.. .+|||||++.+ +..++..|.+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----------~~~~~~~L~~~ 318 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----------KRSVLDALREP 318 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----------CHHHHHHHHHH
Confidence 11211111111111122211111122334433 49999999988 77888999888
Q ss_pred HHHhc----C----CCCCCCeEEEEEeCCC-----C------------------CCCccccCCCCcceEEEecCCCHH
Q 017161 296 VNQLD----G----FDARGNIKVLMATNRP-----D------------------TLDPALLRPGRLDRKVEFGLPDLE 342 (376)
Q Consensus 296 l~~ld----~----~~~~~~v~VI~tTn~~-----~------------------~ld~allr~gRfd~~i~~~~Pd~~ 342 (376)
|+.-. . .....++.+|+++|.. . .+...|+. |||..+.++.++..
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 86421 0 1123478899999962 1 47778888 99999999976543
No 199
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.08 E-value=4.5e-10 Score=115.73 Aligned_cols=153 Identities=22% Similarity=0.370 Sum_probs=104.5
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHh-
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK- 241 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~- 241 (376)
.+.+++|.+..++.+.+.+... ...+.+|||+|++||||+++|+++.... +.+|+.++|..+-..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 6778999999999999998751 2446789999999999999999999864 579999999876432
Q ss_pred ----hhchhhH-------HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCC----C
Q 017161 242 ----YVGEGAR-------MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD----A 304 (376)
Q Consensus 242 ----~~g~~~~-------~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~----~ 304 (376)
.+|.... .....|..|. ...|||||||.+ +.+.|..|+.+++.-. ... .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 1221100 0011344443 348999999999 7888999998886532 111 1
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 305 ~~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
..++.||++||.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchh
Confidence 2368899999864 234444444 442 45566676666654
No 200
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.08 E-value=1.2e-09 Score=116.44 Aligned_cols=155 Identities=25% Similarity=0.416 Sum_probs=105.2
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~ 240 (376)
+..|++++|.+..++.+.+.+... .....+|||+|++|||||++|+++.... +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 357889999999999998888751 1345689999999999999999999864 67999999986532
Q ss_pred h-----hhchh-------hHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCC---
Q 017161 241 K-----YVGEG-------ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD--- 303 (376)
Q Consensus 241 ~-----~~g~~-------~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~--- 303 (376)
. .+|.. .......|..+. ..+||||||+.+ +.+.|..|..+++.-. ...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCC
Confidence 2 22211 011122344443 359999999998 7889999999887532 111
Q ss_pred -CCCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 304 -ARGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 304 -~~~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
...++.+|++|+.. ..+.+.|.. |+ ..+.+..|...+|.+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~ 554 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPE 554 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHh
Confidence 12468899999864 122233333 33 255677777777755
No 201
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=3e-09 Score=102.77 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceE----EEechhhhHh-------
Q 017161 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI----RVIGSELVQK------- 241 (376)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i----~v~~~el~~~------- 241 (376)
+..+.+.+...+.. -+-|..+||+||+|+||+++|.++|..+.+.-. ...+..++..
T Consensus 9 ~~~~~~~l~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDA------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 45666777766653 144667999999999999999999987632110 0011111100
Q ss_pred hh-------c------hhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 017161 242 YV-------G------EGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (376)
Q Consensus 242 ~~-------g------~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 304 (376)
++ | -....+|++.+.+.. +..-|++||++|.+ +...++.|+..|++ +
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 140 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----P 140 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----C
Confidence 00 1 123456666555433 33469999999999 77788888888775 5
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 017161 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 373 (376)
Q Consensus 305 ~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~ 373 (376)
..++++|.+|+.++.|-|.+++ |+ ..+.|+.|+.++....|... +.+. .+...++.++.|.
T Consensus 141 p~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~~-~~a~~~~~l~~G~ 201 (319)
T PRK08769 141 SPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVSE-RAAQEALDAARGH 201 (319)
T ss_pred CCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCCh-HHHHHHHHHcCCC
Confidence 6788899999999999999999 88 78899999998888877642 2221 2234556666654
No 202
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.07 E-value=1.7e-09 Score=100.73 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=70.0
Q ss_pred CceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhchh---hHHHHHHHHHHHcCCCeEEEEcCCcccccC
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG---ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~~---~~~~~~lf~~a~~~~psIl~iDEiD~l~~~ 276 (376)
.+++|+|+||||||+|+.++|+++ +..++.++..++........ ......++.... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999987 77888888888876543321 112233444433 467999999987631
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+......+.++++.-. ..+..+|+|||..
T Consensus 177 --------s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 3444567778887532 2345688999964
No 203
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.06 E-value=1.1e-09 Score=116.06 Aligned_cols=154 Identities=21% Similarity=0.328 Sum_probs=102.5
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~ 240 (376)
..+|++++|.+..++++.+.+... ......|||+|++||||+++|+++.+.. +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 457899999999999988887651 2345679999999999999999999865 47999999976632
Q ss_pred -----hhhchh----hHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCC--CC----C
Q 017161 241 -----KYVGEG----ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF--DA----R 305 (376)
Q Consensus 241 -----~~~g~~----~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~--~~----~ 305 (376)
..+|.. .......|+.| ...+||||||+.+ +...|..|+.+|+.-.-. .. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 222211 00000123333 2359999999998 788999999988642111 11 1
Q ss_pred CCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHH
Q 017161 306 GNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRT 345 (376)
Q Consensus 306 ~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~ 345 (376)
-++.||+||+.. ..+.+.|.. |+ ..+.+..|...+|.
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l-~~~~i~lPpLreR~ 499 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYY--AL-HAFEITIPPLRMRR 499 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhh--hh-ceeEEeCCChhhhh
Confidence 257899999864 122333333 33 25666777777764
No 204
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.05 E-value=1.9e-10 Score=97.93 Aligned_cols=106 Identities=28% Similarity=0.508 Sum_probs=76.0
Q ss_pred cCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC---CceEEEechhhhHhhhchhh
Q 017161 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQKYVGEGA 247 (376)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~---~~~i~v~~~el~~~~~g~~~ 247 (376)
+|....++++++.+... ......|+|+|++||||+++|++++.... .+|+.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 46777888888887651 13456799999999999999999998764 466666665432
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 248 ~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
.++++.+ ....|||+|+|.+ +.+.|..+.+++...+ ..++.+|+++..
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQ 109 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC
T ss_pred ---HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCC
Confidence 3355554 4459999999999 8889999999988743 456678888775
No 205
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.03 E-value=6.6e-10 Score=114.42 Aligned_cols=135 Identities=21% Similarity=0.254 Sum_probs=88.6
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCc-eEEE---echhhhHhhhch---hhHHH-HHHHHHHHcCCCeEEEEcCCcccc
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDAC-FIRV---IGSELVQKYVGE---GARMV-RELFQMARSKKACIVFFDEVDAIG 274 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~-~i~v---~~~el~~~~~g~---~~~~~-~~lf~~a~~~~psIl~iDEiD~l~ 274 (376)
.++||+|+||||||++|++++..+... |... ++..+....... +...+ ...+..| ...+++|||++.+
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l- 312 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLA---DNGVCCIDEFDKM- 312 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEec---CCCEEEEechhhC-
Confidence 379999999999999999999976433 2221 111121110000 00000 0011122 2349999999998
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC-------------CCCccccCCCCcceE
Q 017161 275 GARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLRPGRLDRK 333 (376)
Q Consensus 275 ~~r~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~VI~tTn~~~-------------~ld~allr~gRfd~~ 333 (376)
+...+..|.+.+++-. |. .-..++.||+|+|..+ .|++++++ |||..
T Consensus 313 ----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi 380 (509)
T smart00350 313 ----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLL 380 (509)
T ss_pred ----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeE
Confidence 6778888988886421 21 1134688999999753 58999999 99986
Q ss_pred EEe-cCCCHHHHHHHHHHHhc
Q 017161 334 VEF-GLPDLESRTQIFKIHTR 353 (376)
Q Consensus 334 i~~-~~Pd~~~r~~Il~~~~~ 353 (376)
+.+ +.|+.+...+|.+..+.
T Consensus 381 ~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 381 FVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEecCCCChHHHHHHHHHHHH
Confidence 555 78999999999987553
No 206
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.3e-09 Score=108.53 Aligned_cols=143 Identities=20% Similarity=0.283 Sum_probs=95.0
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhch-hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGE-GARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~-~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~ 280 (376)
-.++||+||||+|||+||..+|...+.||+.+-.++-+-.+... .-..+..+|..|++..-+||++|+|+.+..-
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~---- 613 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY---- 613 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc----
Confidence 34799999999999999999999999999998776654332221 2235789999999999999999999988531
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCCC-ccccCCCCcceEEEecCCCH-HHHHHHHHH
Q 017161 281 GVGGDNEVQRTMLEIVNQLDGFDARG-NIKVLMATNRPDTLD-PALLRPGRLDRKVEFGLPDL-ESRTQIFKI 350 (376)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~ld~~~~~~-~v~VI~tTn~~~~ld-~allr~gRfd~~i~~~~Pd~-~~r~~Il~~ 350 (376)
..-+.+....++..|+-.+..-.+.+ +.+|++||.+.+.|. -.++. .|+..+.+|..+. ++..+++..
T Consensus 614 vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 614 VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 11122222222223333344334444 466667777654332 23444 7888888887755 566666543
No 207
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.02 E-value=4.6e-09 Score=110.06 Aligned_cols=53 Identities=30% Similarity=0.486 Sum_probs=45.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~ 229 (376)
.|..-+++++|+++.++.++.++.. +.+++|+||||||||++++++|+.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4556788999999999999888864 2489999999999999999999988654
No 208
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.01 E-value=2.6e-09 Score=103.80 Aligned_cols=110 Identities=18% Similarity=0.314 Sum_probs=74.1
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhch---hhHHHHHHHHHHHcCCCeEEEEcCCccccc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE---GARMVRELFQMARSKKACIVFFDEVDAIGG 275 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~---~~~~~~~lf~~a~~~~psIl~iDEiD~l~~ 275 (376)
..+++||||+|||||+||.++|+++ +..++.++..+++...... ........+.... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC-
Confidence 3789999999999999999999976 6788888888887654221 1111111233333 34699999997763
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-C----CCCccccC
Q 017161 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-D----TLDPALLR 326 (376)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~-~----~ld~allr 326 (376)
.++..+..++++++..- ..+..+|+|||.. . .+++.+.+
T Consensus 260 --------~t~~~~~~Lf~iin~R~----~~~k~tIiTSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 260 --------ITEFSKSELFNLINKRL----LRQKKMIISTNLSLEELLKTYSERISS 303 (329)
T ss_pred --------CCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH
Confidence 25666788888888643 1233478899863 2 24555655
No 209
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=6.1e-09 Score=100.62 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc-----------------------
Q 017161 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------------- 229 (376)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~----------------------- 229 (376)
+....+.+...+.. -+.+..+||+||.|+||+++|+++|..+.+.
T Consensus 8 l~~~~~~l~~~~~~------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 8 LVPVWQNWKAGLDA------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 45666777776653 2456789999999999999999999976321
Q ss_pred eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 017161 230 FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (376)
Q Consensus 230 ~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 305 (376)
|+.+.... ..+. -+...+|++...+. .+..-|++||++|.+ +...++.|+..|++ +.
T Consensus 76 ~~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp 136 (319)
T PRK06090 76 LHVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE-----PA 136 (319)
T ss_pred EEEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC-----CC
Confidence 12221110 0000 12234555544443 234569999999999 67778888888775 67
Q ss_pred CCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHH
Q 017161 306 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 350 (376)
Q Consensus 306 ~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~ 350 (376)
.++++|.+|+.++.|-|.+++ |+ ..+.|+.|+.++..+.+..
T Consensus 137 ~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 137 PNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 789999999999999999999 88 7899999999998888764
No 210
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.99 E-value=9.2e-10 Score=109.31 Aligned_cols=155 Identities=24% Similarity=0.393 Sum_probs=106.8
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~ 240 (376)
...+..|+|.+.++.++.+.|+. -.+....|||.|.+||||..+|++|.... ..||+.+||..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 45677899999999999999976 23556789999999999999999999865 78999999976643
Q ss_pred hh-----hchhh----H---HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHh--cCCCCC-
Q 017161 241 KY-----VGEGA----R---MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL--DGFDAR- 305 (376)
Q Consensus 241 ~~-----~g~~~----~---~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--d~~~~~- 305 (376)
.. +|.-. . .-+..|+.|..+ .||+|||..+ ..+.|..|+..|++- +.+...
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCc
Confidence 21 22111 1 112345555444 9999999888 788999999999863 222221
Q ss_pred ---CCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 306 ---GNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 306 ---~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
-+|.||+|||+- ..+-..|.- |+ .++.+..|...+|.+
T Consensus 354 ~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RL-sV~Pl~lPPLRER~~ 401 (550)
T COG3604 354 TIKVDVRVIAATNRDLEEMVRDGEFRADLYY--RL-SVFPLELPPLRERPE 401 (550)
T ss_pred eeEEEEEEEeccchhHHHHHHcCcchhhhhh--cc-cccccCCCCcccCCc
Confidence 259999999973 111112222 33 255666777766654
No 211
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.97 E-value=7e-09 Score=94.66 Aligned_cols=179 Identities=18% Similarity=0.339 Sum_probs=99.6
Q ss_pred cCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCce---EEEec-hhh----hHhh
Q 017161 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF---IRVIG-SEL----VQKY 242 (376)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~---i~v~~-~el----~~~~ 242 (376)
.|.++.++.|.+++.. .+...++|+||.|+|||+|++.+.+.....- +.+.. ... ...+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5778888888887764 3457899999999999999999999873211 11111 000 0000
Q ss_pred -------------h-----------------chhhHHHHHHHHHHHcC-CCeEEEEcCCcccc-cCCCCCCCCCCHHHHH
Q 017161 243 -------------V-----------------GEGARMVRELFQMARSK-KACIVFFDEVDAIG-GARFDDGVGGDNEVQR 290 (376)
Q Consensus 243 -------------~-----------------g~~~~~~~~lf~~a~~~-~psIl~iDEiD~l~-~~r~~~~~~~~~~~~~ 290 (376)
. ......+..++...... ...||+|||++.+. ..+ .......
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHH
Confidence 0 11233455566665543 23799999999996 211 1344555
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCC----C--CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC-CC-CCccc
Q 017161 291 TMLEIVNQLDGFDARGNIKVLMATNRP----D--TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM-NC-ERDIR 362 (376)
Q Consensus 291 ~l~~ll~~ld~~~~~~~v~VI~tTn~~----~--~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~-~~-~~~vd 362 (376)
.+..++.. .....++.+|+++... . .-...+.. |+.. +.+++.+.++..++++..++.. ++ .++.+
T Consensus 143 ~l~~~~~~---~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T PF01637_consen 143 SLRSLLDS---LLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDED 216 (234)
T ss_dssp HHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHH
T ss_pred HHHHHHhh---ccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHH
Confidence 55555544 2234555555555432 1 12233444 7866 9999999999999999987765 11 25667
Q ss_pred HHHHHHHCCCCC
Q 017161 363 FELLARLCPNST 374 (376)
Q Consensus 363 l~~lA~~t~g~s 374 (376)
++.+...|.|..
T Consensus 217 ~~~i~~~~gG~P 228 (234)
T PF01637_consen 217 IEEIYSLTGGNP 228 (234)
T ss_dssp HHHHHHHHTT-H
T ss_pred HHHHHHHhCCCH
Confidence 899999998864
No 212
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.97 E-value=1.1e-08 Score=105.03 Aligned_cols=198 Identities=13% Similarity=0.183 Sum_probs=115.6
Q ss_pred ccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEE
Q 017161 154 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (376)
Q Consensus 154 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v 233 (376)
...+|++++.+.+.+||....+-+++++.|++..+ .+..+.+-+||+||||||||++++++|++++..+..-
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 34679999999999999999999999999998521 2334455788999999999999999999998766543
Q ss_pred echhh-------hHhhhch---hh------HHHHHH-HHHHHc-----------CCCeEEEEcCCcccccCCCCCCCCCC
Q 017161 234 IGSEL-------VQKYVGE---GA------RMVREL-FQMARS-----------KKACIVFFDEVDAIGGARFDDGVGGD 285 (376)
Q Consensus 234 ~~~el-------~~~~~g~---~~------~~~~~l-f~~a~~-----------~~psIl~iDEiD~l~~~r~~~~~~~~ 285 (376)
..+.. ...+.+. .. .....+ +..++. ..+.||+|||+=.++... .
T Consensus 77 ~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~ 149 (519)
T PF03215_consen 77 INPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------T 149 (519)
T ss_pred cCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------H
Confidence 21111 0111111 00 011111 111111 246799999987664321 1
Q ss_pred HHHHHHHHHHHHHhcCCCCCC-CeEEEEE-eC------CC--------CCCCccccCCCCcceEEEecCCCHHHHHHHHH
Q 017161 286 NEVQRTMLEIVNQLDGFDARG-NIKVLMA-TN------RP--------DTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349 (376)
Q Consensus 286 ~~~~~~l~~ll~~ld~~~~~~-~v~VI~t-Tn------~~--------~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~ 349 (376)
......|.+++.. ... .+++|+| +. .. ..+++.++...++ ..|.|.+-...-.+..|+
T Consensus 150 ~~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~ 223 (519)
T PF03215_consen 150 SRFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALK 223 (519)
T ss_pred HHHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHH
Confidence 3334444444432 122 5555555 11 11 1456666654444 678888777766655555
Q ss_pred HHhccC--------CCCCccc-HHHHHHHCCC
Q 017161 350 IHTRTM--------NCERDIR-FELLARLCPN 372 (376)
Q Consensus 350 ~~~~~~--------~~~~~vd-l~~lA~~t~g 372 (376)
..+... ..+.... ++.|+..+.|
T Consensus 224 rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G 255 (519)
T PF03215_consen 224 RILKKEARSSSGKNKVPDKQSVLDSIAESSNG 255 (519)
T ss_pred HHHHHHhhhhcCCccCCChHHHHHHHHHhcCc
Confidence 554322 2222222 6777776644
No 213
>PRK06526 transposase; Provisional
Probab=98.96 E-value=2.7e-09 Score=100.19 Aligned_cols=101 Identities=23% Similarity=0.341 Sum_probs=67.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhchh-hHHHHHHHHHHHcCCCeEEEEcCCcccccC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~~-~~~~~~lf~~a~~~~psIl~iDEiD~l~~~ 276 (376)
.+.+++|+||||||||+||.+++.++ +..+..+.+.+++....... ...+...+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 45689999999999999999999865 56666677777665542211 11122222222 3467999999987732
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+...+..+.++++.... . ..+|+|||.+
T Consensus 174 --------~~~~~~~L~~li~~r~~---~--~s~IitSn~~ 201 (254)
T PRK06526 174 --------EPEAANLFFQLVSSRYE---R--ASLIVTSNKP 201 (254)
T ss_pred --------CHHHHHHHHHHHHHHHh---c--CCEEEEcCCC
Confidence 56667788888876431 1 2378899975
No 214
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.96 E-value=1.7e-08 Score=94.25 Aligned_cols=87 Identities=29% Similarity=0.368 Sum_probs=56.8
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-------------CCCCCccccCCC
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-------------PDTLDPALLRPG 328 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~-------------~~~ld~allr~g 328 (376)
|.++||||++.+ +-+...-|...|. +.-.-+||++||+ |..+++.|+.
T Consensus 297 PGVLFIDEVhML-----------DiEcFTyL~kalE------S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHML-----------DIECFTYLHKALE------SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred CcceEeeehhhh-----------hhHHHHHHHHHhc------CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 668888888887 5555444444432 2334568888885 3556677777
Q ss_pred CcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 329 RLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 329 Rfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
|+ .+|..-+.+.++.++|+++..+.-++. .+..|..|+.
T Consensus 358 Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~ 397 (456)
T KOG1942|consen 358 RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAE 397 (456)
T ss_pred he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHh
Confidence 66 566667778899999999888765554 2233444544
No 215
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=5e-09 Score=101.79 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=94.9
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCc-------------------------eEEEechhhhHhhhc-----hhhHH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC-------------------------FIRVIGSELVQKYVG-----EGARM 249 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~-------------------------~i~v~~~el~~~~~g-----~~~~~ 249 (376)
+.+..+||+||+|+|||++|+.+|..+.+. |+.+....-. ...| -+...
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 556789999999999999999999976321 2222221000 0001 12345
Q ss_pred HHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCcccc
Q 017161 250 VRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALL 325 (376)
Q Consensus 250 ~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~all 325 (376)
+|++.+.+.. ...-|+++|+++.+ +...++.++.++++. ..++.+|++|+.++.+.+.++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep-----~~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEP-----PPQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhC-----cCCCEEEEEeCChHhChHHHH
Confidence 6776666543 34459999999998 888899998888774 245678889999999999999
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHH
Q 017161 326 RPGRLDRKVEFGLPDLESRTQIFKI 350 (376)
Q Consensus 326 r~gRfd~~i~~~~Pd~~~r~~Il~~ 350 (376)
+ |+ ..+.|++|+.++..+.|..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 8 77 7889999999998887754
No 216
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.4e-09 Score=100.75 Aligned_cols=95 Identities=36% Similarity=0.490 Sum_probs=72.1
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH-hhhchhh-HHHHHHHHHHH----cCCCeEEEEcCCcccccC
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGEGA-RMVRELFQMAR----SKKACIVFFDEVDAIGGA 276 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~-~~~g~~~-~~~~~lf~~a~----~~~psIl~iDEiD~l~~~ 276 (376)
.+|||.||+|+|||+||+.+|+-++.||...+|..|.+ .|+|+.. ..+..++..|. ..+..|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 47999999999999999999999999999999999977 4888754 44566666552 223459999999999743
Q ss_pred CCCCC---CCCCHHHHHHHHHHHH
Q 017161 277 RFDDG---VGGDNEVQRTMLEIVN 297 (376)
Q Consensus 277 r~~~~---~~~~~~~~~~l~~ll~ 297 (376)
...-. .-+...+|+.|+.|++
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllE 330 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLE 330 (564)
T ss_pred CccccccccccchhHHHHHHHHhc
Confidence 22111 1235678888888876
No 217
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.94 E-value=4.9e-09 Score=109.57 Aligned_cols=134 Identities=21% Similarity=0.317 Sum_probs=93.8
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCC--ceEEEechhhhHhhhchhh--HHHH--------HHHHHHHcCCCeEEEEcCC
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKYVGEGA--RMVR--------ELFQMARSKKACIVFFDEV 270 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~el~~~~~g~~~--~~~~--------~lf~~a~~~~psIl~iDEi 270 (376)
.+|||.|+||||||++|++++..+.. +|+++.........+|... ..+. .++..| ...+||||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence 58999999999999999999998753 5888775322222233210 0000 011111 2249999999
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhc------CCC--CCCCeEEEEEeCCCC---CCCccccCCCCcceEEEec-C
Q 017161 271 DAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GFD--ARGNIKVLMATNRPD---TLDPALLRPGRLDRKVEFG-L 338 (376)
Q Consensus 271 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld------~~~--~~~~v~VI~tTn~~~---~ld~allr~gRfd~~i~~~-~ 338 (376)
+.+ ++..+..|+++|++-. |.. ...++.||+|+|..+ .+.++|+. ||+..+.+. .
T Consensus 94 ~rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 94 NLL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred hhC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 998 7889999999887532 221 124688999999765 78899999 999887775 4
Q ss_pred CCHHHHHHHHHHHh
Q 017161 339 PDLESRTQIFKIHT 352 (376)
Q Consensus 339 Pd~~~r~~Il~~~~ 352 (376)
|+.++|.+|++..+
T Consensus 161 ~~~~er~eil~~~~ 174 (589)
T TIGR02031 161 ASQDLRVEIVRRER 174 (589)
T ss_pred CCHHHHHHHHHHHH
Confidence 57788999998765
No 218
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.92 E-value=1.2e-08 Score=95.87 Aligned_cols=117 Identities=20% Similarity=0.338 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhchhhH-
Q 017161 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGAR- 248 (376)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~~~~- 248 (376)
...+...+...+.. +..+.+++|+||||+|||+||-|+++++ |..++.+..++++......-..
T Consensus 88 ~~~~l~~~~~~~~~------------~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~ 155 (254)
T COG1484 88 DKKALEDLASLVEF------------FERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEG 155 (254)
T ss_pred hHHHHHHHHHHHHH------------hccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcC
Confidence 34555555555533 1267899999999999999999999976 7888999999998764332221
Q ss_pred HH-HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 249 MV-RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 249 ~~-~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
.. ..+.... ....+|+|||+...- .+......+.+++...- ..... |+|||.+
T Consensus 156 ~~~~~l~~~l--~~~dlLIiDDlG~~~---------~~~~~~~~~~q~I~~r~----~~~~~-~~tsN~~ 209 (254)
T COG1484 156 RLEEKLLREL--KKVDLLIIDDIGYEP---------FSQEEADLLFQLISRRY----ESRSL-IITSNLS 209 (254)
T ss_pred chHHHHHHHh--hcCCEEEEecccCcc---------CCHHHHHHHHHHHHHHH----hhccc-eeecCCC
Confidence 11 1122212 234599999987752 24555667777666542 11222 8899975
No 219
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.92 E-value=2.6e-09 Score=95.09 Aligned_cols=102 Identities=22% Similarity=0.357 Sum_probs=66.2
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhchh-hHHHHHHHHHHHcCCCeEEEEcCCccccc
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGG 275 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~~-~~~~~~lf~~a~~~~psIl~iDEiD~l~~ 275 (376)
..+.+++|+||||||||+||.++++++ +.....++.++++....... .......+.... .+.+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee-
Confidence 456789999999999999999999865 78888999999887653221 112233444443 34599999986541
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
.+......+.++++.-.+ +..+|+|||..
T Consensus 122 --------~~~~~~~~l~~ii~~R~~-----~~~tIiTSN~~ 150 (178)
T PF01695_consen 122 --------LSEWEAELLFEIIDERYE-----RKPTIITSNLS 150 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHH-----T-EEEEEESS-
T ss_pred --------ecccccccchhhhhHhhc-----ccCeEeeCCCc
Confidence 245566777888876431 22577799964
No 220
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.92 E-value=1.1e-08 Score=96.33 Aligned_cols=158 Identities=20% Similarity=0.294 Sum_probs=91.2
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCC-ceEE--Ee-----chhhhHh---hhchh------hHHHHHH----HHHHHcCC
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDA-CFIR--VI-----GSELVQK---YVGEG------ARMVREL----FQMARSKK 261 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~-~~i~--v~-----~~el~~~---~~g~~------~~~~~~l----f~~a~~~~ 261 (376)
..++|+||+|+|||++++.+++.+.. .+.. +. ..++... ..|.. ...++.+ ......+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 2211 11 1111111 11211 1112222 22334567
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC--CCCC-C---ccccCCCCcceEEE
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR--PDTL-D---PALLRPGRLDRKVE 335 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~--~~~l-d---~allr~gRfd~~i~ 335 (376)
+.+|+|||++.+ +......+..+.+... .....+.|+++... .+.+ . ..+.+ |+...+.
T Consensus 124 ~~vliiDe~~~l-----------~~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~ 188 (269)
T TIGR03015 124 RALLVVDEAQNL-----------TPELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCH 188 (269)
T ss_pred CeEEEEECcccC-----------CHHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeee
Confidence 789999999987 3334444433322211 11223344444332 1111 1 23445 7778899
Q ss_pred ecCCCHHHHHHHHHHHhccCCCC-----CcccHHHHHHHCCCCCC
Q 017161 336 FGLPDLESRTQIFKIHTRTMNCE-----RDIRFELLARLCPNSTG 375 (376)
Q Consensus 336 ~~~Pd~~~r~~Il~~~~~~~~~~-----~~vdl~~lA~~t~g~sG 375 (376)
+++.+.++..+++...++..+.. .+..++.|++.|.|..+
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~ 233 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR 233 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc
Confidence 99999999999999888654321 23467888999998653
No 221
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.90 E-value=1.8e-08 Score=98.71 Aligned_cols=163 Identities=25% Similarity=0.342 Sum_probs=109.0
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEec---------
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG--------- 235 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~--------- 235 (376)
+.|.-++|++..+..|--.... +.-.|+||.|+.||||||++|++|..+.-.-+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4566699999888766433222 334689999999999999999999977322211111
Q ss_pred ----hhhhHh-------------------hhchhhH-HHHH-----H-------HH---HHHcCCCeEEEEcCCcccccC
Q 017161 236 ----SELVQK-------------------YVGEGAR-MVRE-----L-------FQ---MARSKKACIVFFDEVDAIGGA 276 (376)
Q Consensus 236 ----~el~~~-------------------~~g~~~~-~~~~-----l-------f~---~a~~~~psIl~iDEiD~l~~~ 276 (376)
.+...+ -.|.++. .+.. . |+ .|+.+ ..|+++||+..+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL--- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL--- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc---
Confidence 111111 1222222 1111 0 10 01222 239999999988
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCC-CCCCccccCCCCcceEEEecCC-CHHHHHH
Q 017161 277 RFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRP-DTLDPALLRPGRLDRKVEFGLP-DLESRTQ 346 (376)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l------d~~--~~~~~v~VI~tTn~~-~~ld~allr~gRfd~~i~~~~P-d~~~r~~ 346 (376)
+...+..|+..+..- +|+ ...-++++|+|+|.- ..|-|.|+. ||...+.+..| +.++|.+
T Consensus 157 --------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 157 --------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred --------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 788999999888763 232 345579999999975 568888998 99999999877 7789999
Q ss_pred HHHHHhcc
Q 017161 347 IFKIHTRT 354 (376)
Q Consensus 347 Il~~~~~~ 354 (376)
|++....-
T Consensus 227 Ii~r~~~f 234 (423)
T COG1239 227 IIRRRLAF 234 (423)
T ss_pred HHHHHHHh
Confidence 99877654
No 222
>PRK06921 hypothetical protein; Provisional
Probab=98.90 E-value=1.7e-08 Score=95.43 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=65.0
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc----CCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcc-ccc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA-IGG 275 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~-l~~ 275 (376)
...+++|+||||||||+|+.++|+++ +..++.+...+++....... ......+... ....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 35789999999999999999999975 55667777766655432211 1112222222 3456999999954 212
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
.. ......+..+..+++... ..+..+|+|||.+
T Consensus 193 ~e-----~~t~~~~~~lf~iin~R~----~~~k~tIitsn~~ 225 (266)
T PRK06921 193 KP-----RATEWQIEQMYSVLNYRY----LNHKPILISSELT 225 (266)
T ss_pred Cc-----cCCHHHHHHHHHHHHHHH----HCCCCEEEECCCC
Confidence 11 113444567778887643 1223367888863
No 223
>PF13173 AAA_14: AAA domain
Probab=98.89 E-value=2e-08 Score=84.32 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=74.3
Q ss_pred CceeeecCCCChHHHHHHHHHHhcC--CceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCC
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~--~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~ 280 (376)
+.++|+||.|||||++++.++..+. ..++.+++.+.......... +.+.+.........+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 5689999999999999999999876 77788887766442211111 222222222225679999999987
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccc--cCCCCcceEEEecCCCHHH
Q 017161 281 GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPAL--LRPGRLDRKVEFGLPDLES 343 (376)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~al--lr~gRfd~~i~~~~Pd~~~ 343 (376)
++....+..+.+. ..++.||+|++....+.... .-+||. ..+++.+.+..+
T Consensus 74 -----~~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 74 -----PDWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred -----ccHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 2344555555442 23566777776554442211 123577 477787777655
No 224
>PRK09183 transposase/IS protein; Provisional
Probab=98.89 E-value=8.8e-09 Score=97.07 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=69.7
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhch-hhHHHHHHHHHHHcCCCeEEEEcCCccccc
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE-GARMVRELFQMARSKKACIVFFDEVDAIGG 275 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~-~~~~~~~lf~~a~~~~psIl~iDEiD~l~~ 275 (376)
....+++|+||||||||+|+.+++... +..+..+++.++...+... ....+...+... ...+++++|||++....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 446789999999999999999998764 6677777877776543221 112234445443 24567999999987522
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+.+.+..++++++.... .+ .+|+|||.+
T Consensus 179 ---------~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 179 ---------SQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred ---------ChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 44556778888876532 22 378899875
No 225
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.88 E-value=8.2e-09 Score=105.29 Aligned_cols=147 Identities=22% Similarity=0.313 Sum_probs=94.4
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCce--EEEechhhh---
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF--IRVIGSELV--- 239 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~--i~v~~~el~--- 239 (376)
..|.++.|...+++.+. . .+....+++|+||||||||++++.++..+...- ..+....+.
T Consensus 188 ~d~~~v~Gq~~~~~al~----l-----------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLE----I-----------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhh----e-----------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 36778888877665543 2 224567899999999999999999997542110 001111100
Q ss_pred -----------------------HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 017161 240 -----------------------QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 296 (376)
Q Consensus 240 -----------------------~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 296 (376)
...+|.+...-...+..|..+ +|||||++.+ +...+..|.+.|
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC-----------CHHHHHHHHHHH
Confidence 011222211112345555554 9999999887 678888888887
Q ss_pred HHhc----C----CCCCCCeEEEEEeCCCC---------------------CCCccccCCCCcceEEEecCCCHH
Q 017161 297 NQLD----G----FDARGNIKVLMATNRPD---------------------TLDPALLRPGRLDRKVEFGLPDLE 342 (376)
Q Consensus 297 ~~ld----~----~~~~~~v~VI~tTn~~~---------------------~ld~allr~gRfd~~i~~~~Pd~~ 342 (376)
+.-. . .....++.+|+|+|... .+..+++. |||..+.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 5422 1 11234689999999742 36678888 99999999988654
No 226
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=3.5e-08 Score=97.47 Aligned_cols=186 Identities=20% Similarity=0.245 Sum_probs=126.5
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC----C-ceEEEechhhhH--
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD----A-CFIRVIGSELVQ-- 240 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~----~-~~i~v~~~el~~-- 240 (376)
..+.|.+.....+++++..+ +..+.+..+++.|.||||||.+..-+...+. . ..++++|..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h---------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH---------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhh---------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45899999999999999863 3346678899999999999999987766442 2 346777765321
Q ss_pred ----h----h----hchh-hHHHHHHHHH-HHcC-CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 017161 241 ----K----Y----VGEG-ARMVRELFQM-ARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (376)
Q Consensus 241 ----~----~----~g~~-~~~~~~lf~~-a~~~-~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 305 (376)
+ + .+.+ .......|.. .... .+-++++||+|.++... +.++..++.. .. .+.
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFew-p~-lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEW-PK-LPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhc-cc-CCc
Confidence 1 1 1111 1122233333 2222 36799999999997432 3445444432 21 245
Q ss_pred CCeEEEEEeCCCCCCCccccC----CCCcceEEEecCCCHHHHHHHHHHHhccCCCCC--cccHHHHHHHCCCCCC
Q 017161 306 GNIKVLMATNRPDTLDPALLR----PGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER--DIRFELLARLCPNSTG 375 (376)
Q Consensus 306 ~~v~VI~tTn~~~~ld~allr----~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~--~vdl~~lA~~t~g~sG 375 (376)
.++++|+.+|..+.-|..|-| .+.-...+.|++++.++..+||+..+....... +..++.+|+.+.|.||
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence 678899999988766654432 223346899999999999999999998766543 3457889999999888
No 227
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.81 E-value=2.9e-08 Score=95.65 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=66.5
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhchh-hHHHHHHHHHHHcCCCeEEEEcCCcccccC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~~-~~~~~~lf~~a~~~~psIl~iDEiD~l~~~ 276 (376)
..+|++|+||+|||||+|+.|+|+++ +.....+..++++....... ...+...+.... ...+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 45799999999999999999999987 67778888888766543221 112233444333 44699999997642
Q ss_pred CCCCCCCCCHHHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 277 RFDDGVGGDNEVQR-TMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 277 r~~~~~~~~~~~~~-~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
.++.... .+..+++.- -..+..+|+|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R----~~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYR----MQEELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHH----HHCCCeEEEECCCC
Confidence 1333343 334455431 02345689999964
No 228
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.78 E-value=7.3e-08 Score=108.46 Aligned_cols=176 Identities=22% Similarity=0.321 Sum_probs=104.9
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCce---EEEech---
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF---IRVIGS--- 236 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~---i~v~~~--- 236 (376)
+...+++++|.+..++++...+.. +....+.+.|+|++|+||||||+++++.+...| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 445678899999999999988753 234556789999999999999999998764332 111110
Q ss_pred ---hhhH-----hh---hchhhHHHH-------------HHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHH
Q 017161 237 ---ELVQ-----KY---VGEGARMVR-------------ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM 292 (376)
Q Consensus 237 ---el~~-----~~---~g~~~~~~~-------------~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l 292 (376)
+... .+ .......+. .........++.+|+||+++.. ..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~----------------~~l 311 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ----------------DVL 311 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH----------------HHH
Confidence 0000 00 000000011 1112223356779999998643 112
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccH----HHHHH
Q 017161 293 LEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRF----ELLAR 368 (376)
Q Consensus 293 ~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl----~~lA~ 368 (376)
..+....+.+ ..+..||+||+.. .+++...+++.+.++.|+.++..++|..++.....++ .++ .++++
T Consensus 312 ~~L~~~~~~~--~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~ 383 (1153)
T PLN03210 312 DALAGQTQWF--GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVAL 383 (1153)
T ss_pred HHHHhhCccC--CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH
Confidence 2222222222 2345677888854 3333335678999999999999999998886544332 233 34667
Q ss_pred HCCCC
Q 017161 369 LCPNS 373 (376)
Q Consensus 369 ~t~g~ 373 (376)
.|.|.
T Consensus 384 ~c~GL 388 (1153)
T PLN03210 384 RAGNL 388 (1153)
T ss_pred HhCCC
Confidence 77765
No 229
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.76 E-value=1.9e-08 Score=101.85 Aligned_cols=153 Identities=21% Similarity=0.344 Sum_probs=100.0
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~ 242 (376)
.+.+++|.+..++.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 3456888888888888776531 1345679999999999999999998865 5789999998763321
Q ss_pred h-----chhh-------HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCC----C
Q 017161 243 V-----GEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD----A 304 (376)
Q Consensus 243 ~-----g~~~-------~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~----~ 304 (376)
. |... ......+..| ...+||||||+.+ +...|..+.+++..-. ... .
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCcee
Confidence 1 1100 0001112222 3459999999999 7889999999887531 000 1
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 305 ~~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
..++.+|+||+.. ..+.+.|.. |+ ..+.+..|...+|.+
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDG 317 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchh
Confidence 2367899998864 234444444 44 245667777777765
No 230
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.74 E-value=3.1e-08 Score=97.47 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=65.4
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCC-ceEEEechhhhHhhhch------hhHHHHHHHHHHHcCCCeEEEEcCCc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDA-CFIRVIGSELVQKYVGE------GARMVRELFQMARSKKACIVFFDEVD 271 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~-~~i~v~~~el~~~~~g~------~~~~~~~lf~~a~~~~psIl~iDEiD 271 (376)
..+|+|++||||+|+|||+|.-.+...+.. .-.++...+++...... ...-+..+-..... ...+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 467899999999999999999999988754 22333333333321111 11112222222222 22499999997
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-CCCC
Q 017161 272 AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP-DTLD 321 (376)
Q Consensus 272 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~-~~ld 321 (376)
.- +..-...|..|+..+- ..++++|+|+|++ +.|-
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLY 173 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHc
Confidence 64 3444455556776653 4678899999984 4443
No 231
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.73 E-value=5.1e-08 Score=104.36 Aligned_cols=135 Identities=21% Similarity=0.249 Sum_probs=85.5
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc-------CCceEEEechhhhHhhhch--hhHHH-HHHHHHHHcCCCeEEEEcC
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSELVQKYVGE--GARMV-RELFQMARSKKACIVFFDE 269 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l-------~~~~i~v~~~el~~~~~g~--~~~~~-~~lf~~a~~~~psIl~iDE 269 (376)
+..-+|||.|+||||||.+|+++++.. +.++..+.+..... +.+. +...+ ...+..|. ..+++|||
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDE 565 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDE 565 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcC---CCeEEecc
Confidence 344589999999999999999999854 23444443333211 0110 00000 01112222 24999999
Q ss_pred CcccccCCCCCCCCCCHHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCC-------------CCCCccccCCC
Q 017161 270 VDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRP-------------DTLDPALLRPG 328 (376)
Q Consensus 270 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~VI~tTn~~-------------~~ld~allr~g 328 (376)
++.+ +...|..|.++|++-. |. .-..++.||||+|.. -.|+++|++
T Consensus 566 idkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS-- 632 (915)
T PTZ00111 566 LDKC-----------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT-- 632 (915)
T ss_pred hhhC-----------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--
Confidence 9998 7788899999886522 21 123478999999974 246789999
Q ss_pred CcceEEE-ecCCCHHHHHHHHHHH
Q 017161 329 RLDRKVE-FGLPDLESRTQIFKIH 351 (376)
Q Consensus 329 Rfd~~i~-~~~Pd~~~r~~Il~~~ 351 (376)
|||.++. ++.|+.+.=..|-.+.
T Consensus 633 RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 633 RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred hhcEEEEecCCCChHHHHHHHHHH
Confidence 9998654 4777776555554443
No 232
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=2.7e-07 Score=87.82 Aligned_cols=131 Identities=11% Similarity=0.132 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc----------------eEEEechhh
Q 017161 175 EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC----------------FIRVIGSEL 238 (376)
Q Consensus 175 ~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~----------------~i~v~~~el 238 (376)
...+.|...+.. -+-+..+||+||.|+||+.+|.++|..+-+. +..+.. +-
T Consensus 4 ~~~~~L~~~i~~------------~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p-~~ 70 (290)
T PRK05917 4 AAWEALIQRVRD------------QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP-QG 70 (290)
T ss_pred HHHHHHHHHHHc------------CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec-CC
Confidence 345566666653 1456689999999999999999999976432 111110 00
Q ss_pred hHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 017161 239 VQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (376)
Q Consensus 239 ~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT 314 (376)
.... -+...+|++...+. .+..-|++||++|.+ +.+.++.|+.+|++ +..++++|..|
T Consensus 71 ~~~~--I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~ 132 (290)
T PRK05917 71 KGRL--HSIETPRAIKKQIWIHPYESPYKIYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTS 132 (290)
T ss_pred CCCc--CcHHHHHHHHHHHhhCccCCCceEEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEe
Confidence 0000 12334555544443 244469999999999 77888998888875 57789999999
Q ss_pred CCCCCCCccccCCCCcceEEEecCC
Q 017161 315 NRPDTLDPALLRPGRLDRKVEFGLP 339 (376)
Q Consensus 315 n~~~~ld~allr~gRfd~~i~~~~P 339 (376)
+.++.+.|.+++ |+ ..+.|+++
T Consensus 133 ~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 133 AKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CChhhCcHHHHh--cc-eEEEccch
Confidence 999999999999 87 66677654
No 233
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.69 E-value=6.2e-08 Score=101.56 Aligned_cols=54 Identities=30% Similarity=0.473 Sum_probs=45.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
....|+..|+++.|++++++.|..++.. ..+++|+||||||||+++++++..+.
T Consensus 22 ~~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 22 DIEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ecccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3456678999999999999999887754 24799999999999999999998764
No 234
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.67 E-value=7.6e-08 Score=98.15 Aligned_cols=153 Identities=22% Similarity=0.353 Sum_probs=98.9
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~ 242 (376)
.+.+++|....++.+.+.+.. -......++|.|++|||||++|+++.... +.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~-----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR-----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHH-----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 456788988888888777753 11345679999999999999999999875 5799999998763321
Q ss_pred -----hchhhHH-------HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcC--CC----C
Q 017161 243 -----VGEGARM-------VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD----A 304 (376)
Q Consensus 243 -----~g~~~~~-------~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~--~~----~ 304 (376)
+|..... ....|..+ ....|||||++.+ +...|..|+.++..-.- .. .
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 1111000 00112222 2348999999998 78889999988875321 00 1
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 305 ~~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
..++.+|+||+.. ..+.+.|.. ||. .+.+..|...+|.+
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~ 316 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERRE 316 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchh
Confidence 2357899999863 234555655 552 34555565555543
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.67 E-value=2.3e-07 Score=79.65 Aligned_cols=111 Identities=21% Similarity=0.325 Sum_probs=67.2
Q ss_pred eeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh------------------------hchhhHHHHHHHHHH
Q 017161 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------------------------VGEGARMVRELFQMA 257 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~------------------------~g~~~~~~~~lf~~a 257 (376)
++|+||||+|||+++..++... +.+.+.++........ ........+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999876 4566666554332211 000111122334556
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
....|.+++|||+..+.........+.+....+.+..++.... ..++.+|++++....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCc
Confidence 6778899999999988643211001123444555666665543 346778888876543
No 236
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.7e-09 Score=103.12 Aligned_cols=48 Identities=29% Similarity=0.453 Sum_probs=40.8
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
...|.||.|++.+++.+.-+... ..++|++||||||||++|+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 34788999999999998877643 5789999999999999999887643
No 237
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.65 E-value=4e-08 Score=93.20 Aligned_cols=138 Identities=22% Similarity=0.358 Sum_probs=78.7
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCc---eEEEechhhhHhhhchhhHHHHHHHHHH-----------HcCCCeEEE
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSELVQKYVGEGARMVRELFQMA-----------RSKKACIVF 266 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~---~i~v~~~el~~~~~g~~~~~~~~lf~~a-----------~~~~psIl~ 266 (376)
..+++||.||+|||||++++.+-..+... ...++++... +...+..+.+.. ..++..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 45689999999999999999888766432 2233333221 112222221111 123456999
Q ss_pred EcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC--------CCeEEEEEeCCCC---CCCccccCCCCcceEEE
Q 017161 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR--------GNIKVLMATNRPD---TLDPALLRPGRLDRKVE 335 (376)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~--------~~v~VI~tTn~~~---~ld~allr~gRfd~~i~ 335 (376)
|||+..-.....+ .......|-++++. .|+... .++.+|+|++... .+++.++| .| ..+.
T Consensus 106 iDDlN~p~~d~yg-----tq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~ 176 (272)
T PF12775_consen 106 IDDLNMPQPDKYG-----TQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILN 176 (272)
T ss_dssp EETTT-S---TTS-------HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE
T ss_pred ecccCCCCCCCCC-----CcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEE
Confidence 9999876544322 22233344444443 233222 3688889988642 47788887 67 6899
Q ss_pred ecCCCHHHHHHHHHHHhc
Q 017161 336 FGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 336 ~~~Pd~~~r~~Il~~~~~ 353 (376)
++.|+.+....|+..++.
T Consensus 177 ~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ----TCCHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHh
Confidence 999999999998877665
No 238
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.63 E-value=5e-07 Score=85.76 Aligned_cols=167 Identities=23% Similarity=0.282 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHh--cCCce---EEEechh------hhHh-
Q 017161 174 KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR--TDACF---IRVIGSE------LVQK- 241 (376)
Q Consensus 174 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~--l~~~~---i~v~~~e------l~~~- 241 (376)
+..+++|.+.+.. .. ...+.+.|+|++|+|||+||+.+++. ....| +.++.+. +...
T Consensus 2 e~~~~~l~~~L~~----------~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLD----------NS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHT----------TT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhC----------CC-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 4556667666653 11 45667999999999999999999987 33322 2222221 1111
Q ss_pred --hhch---------hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEE
Q 017161 242 --YVGE---------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (376)
Q Consensus 242 --~~g~---------~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~V 310 (376)
..+. ........+.......+++|+||+++.. . .+.++...+.. ...+..|
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~-------------~---~~~~l~~~~~~--~~~~~ki 132 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE-------------E---DLEELREPLPS--FSSGSKI 132 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH-------------H---HH-------HC--HHSS-EE
T ss_pred cccccccccccccccccccccccchhhhccccceeeeeeeccc-------------c---ccccccccccc--ccccccc
Confidence 1111 1122333333444455899999998754 1 22222221111 1235678
Q ss_pred EEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC----CCCcccHHHHHHHCCCC
Q 017161 311 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN----CERDIRFELLARLCPNS 373 (376)
Q Consensus 311 I~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~----~~~~vdl~~lA~~t~g~ 373 (376)
|+||....... ..- .-+..+.++..+.++..++|..+..... ....-....|++.|.|.
T Consensus 133 lvTTR~~~v~~-~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 133 LVTTRDRSVAG-SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp EEEESCGGGGT-THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred ccccccccccc-ccc---ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88887643211 111 1157899999999999999998875543 11122357899999885
No 239
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.62 E-value=1.8e-07 Score=94.95 Aligned_cols=153 Identities=24% Similarity=0.364 Sum_probs=96.9
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY 242 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~ 242 (376)
.+..+.|.+.....+.+.+... ......++++|++||||+++|+++.... +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 3456788887777776665431 1334579999999999999999998764 5799999998763321
Q ss_pred -----hchhhHH-------HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCC----C
Q 017161 243 -----VGEGARM-------VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD----A 304 (376)
Q Consensus 243 -----~g~~~~~-------~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~----~ 304 (376)
+|..... ....|..| ...+||||||+.+ +...|..++.++..-. ... .
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 1110000 00122222 2359999999999 7888999988886521 111 1
Q ss_pred CCCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 305 RGNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 305 ~~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
..++.||+|||.. ..+.+.+.. |+ ..+.+..|...+|.+
T Consensus 276 ~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l-~~~~i~~ppLreR~~ 321 (457)
T PRK11361 276 KVDIRIIAATNRDLQAMVKEGTFREDLFY--RL-NVIHLILPPLRDRRE 321 (457)
T ss_pred eeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh-ccceecCCChhhchh
Confidence 2357899999863 123333333 33 246677777777654
No 240
>PF05729 NACHT: NACHT domain
Probab=98.61 E-value=6.1e-07 Score=77.47 Aligned_cols=140 Identities=15% Similarity=0.197 Sum_probs=77.6
Q ss_pred ceeeecCCCChHHHHHHHHHHhcC---------CceEEEechhhhHh------------hhchhhHHHHH-HHHHHHcCC
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTD---------ACFIRVIGSELVQK------------YVGEGARMVRE-LFQMARSKK 261 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~---------~~~i~v~~~el~~~------------~~g~~~~~~~~-lf~~a~~~~ 261 (376)
-++|+|+||+|||++++.++..+. ...+.+.+.+.... ........... +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998651 11223333222111 11111111122 222334566
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CCccccCCCCcceEEEecCC
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT--LDPALLRPGRLDRKVEFGLP 339 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~--ld~allr~gRfd~~i~~~~P 339 (376)
..+|+||.+|.+...... .........+.+++.. ....++.+|.|++.... +...+.. ...+.+...
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCC
Confidence 779999999999543210 0011222333344433 12345666766654322 2222222 157889999
Q ss_pred CHHHHHHHHHHHhcc
Q 017161 340 DLESRTQIFKIHTRT 354 (376)
Q Consensus 340 d~~~r~~Il~~~~~~ 354 (376)
+.+++.++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988754
No 241
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.60 E-value=4.8e-07 Score=83.72 Aligned_cols=127 Identities=20% Similarity=0.288 Sum_probs=81.3
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~ 280 (376)
...+..++||+|||||.+++.+|..+|..++..+|++.+. ...+.++|.-+... .+.++|||++.+
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl------- 96 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL------- 96 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-------
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-------
Confidence 3457789999999999999999999999999999988643 23445555444332 359999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhcC---------------CCCCCCeEEEEEeCC----CCCCCccccCCCCcceEEEecCCCH
Q 017161 281 GVGGDNEVQRTMLEIVNQLDG---------------FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDL 341 (376)
Q Consensus 281 ~~~~~~~~~~~l~~ll~~ld~---------------~~~~~~v~VI~tTn~----~~~ld~allr~gRfd~~i~~~~Pd~ 341 (376)
+.++...+.+.+..+.. +.-+.++-+++|.|. ...|++.|+. .| |.+.+..||.
T Consensus 97 ----~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~ 169 (231)
T PF12774_consen 97 ----SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDL 169 (231)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--H
T ss_pred ----hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCH
Confidence 77787777766665421 011234556777774 3567777776 55 8999999998
Q ss_pred HHHHHHH
Q 017161 342 ESRTQIF 348 (376)
Q Consensus 342 ~~r~~Il 348 (376)
....+++
T Consensus 170 ~~I~ei~ 176 (231)
T PF12774_consen 170 SLIAEIL 176 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8755554
No 242
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.60 E-value=2.4e-07 Score=77.34 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=47.6
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc--------CCceEEEechhhhH------h----h----hc--hhhHHHHHHHHH
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT--------DACFIRVIGSELVQ------K----Y----VG--EGARMVRELFQM 256 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l--------~~~~i~v~~~el~~------~----~----~g--~~~~~~~~lf~~ 256 (376)
..+.++++||||+|||++++.++..+ ...++.+.++.... . + .. ........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35679999999999999999999977 67777777665431 1 0 01 123334445555
Q ss_pred HHcCCCeEEEEcCCccc
Q 017161 257 ARSKKACIVFFDEVDAI 273 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l 273 (376)
.......+|+|||+|.+
T Consensus 83 l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHCTEEEEEEETTHHH
T ss_pred HHhcCCeEEEEeChHhc
Confidence 55555569999999997
No 243
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.58 E-value=4.4e-07 Score=93.55 Aligned_cols=157 Identities=20% Similarity=0.282 Sum_probs=103.7
Q ss_pred ceeeecCCCChHHHHHHHHHHhc----------CCceEEEechhhhHh----------hhchh------hHHHHHHHHHH
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGSELVQK----------YVGEG------ARMVRELFQMA 257 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l----------~~~~i~v~~~el~~~----------~~g~~------~~~~~~lf~~a 257 (376)
.++++|-||||||.+++.+...+ ...|+.|++..+.+. +.|+. -..+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68899999999999999998854 356788887665432 22221 11223333311
Q ss_pred -HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCc----cccCCCCcc-
Q 017161 258 -RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP----ALLRPGRLD- 331 (376)
Q Consensus 258 -~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~----allr~gRfd- 331 (376)
....++||+|||+|.+.+.. |.+|..+++... ..+..++||+.+|..+.... .+-+ |++
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~ 568 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGL 568 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccc
Confidence 23567899999999997543 677777776533 23556888888887553222 2223 554
Q ss_pred eEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCC
Q 017161 332 RKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 375 (376)
Q Consensus 332 ~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sG 375 (376)
..+.|.+.+..+..+|+...+.....-..-..+.+|+....-||
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG 612 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG 612 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc
Confidence 47889999999999999999988744333344556665555444
No 244
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.54 E-value=1.2e-06 Score=83.20 Aligned_cols=160 Identities=16% Similarity=0.204 Sum_probs=94.9
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc---------CCceEEEechhh----------hHh----h--hchhhHHHHHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSEL----------VQK----Y--VGEGARMVRELFQM 256 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~~el----------~~~----~--~g~~~~~~~~lf~~ 256 (376)
..++||+|++|.|||++++.++..- ..|++.+.++.- +.. + .......-..+...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999743 246677765421 111 0 01112222334455
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC--C--CCCCccccCCCCcce
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR--P--DTLDPALLRPGRLDR 332 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~--~--~~ld~allr~gRfd~ 332 (376)
.+...+-+|+|||++.++. ++...|+.++.+|..+. +.-++.+|+.... . =.-|+.+-+ ||..
T Consensus 141 lr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~---NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~ 207 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLG---NELQIPIVGVGTREAYRALRTDPQLAS--RFEP 207 (302)
T ss_pred HHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHh---hccCCCeEEeccHHHHHHhccCHHHHh--ccCC
Confidence 5667777999999999754 24445677766666652 2334444444322 1 233677777 8853
Q ss_pred EEEecCC-CHHHHHHHHHHHhccCCCCC--cccH----HHHHHHCCCCCC
Q 017161 333 KVEFGLP-DLESRTQIFKIHTRTMNCER--DIRF----ELLARLCPNSTG 375 (376)
Q Consensus 333 ~i~~~~P-d~~~r~~Il~~~~~~~~~~~--~vdl----~~lA~~t~g~sG 375 (376)
+.+|.= ..++-..++..+-+.+++.. ...- ..|-.+|+|..|
T Consensus 208 -~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 208 -FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred -ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 334322 33455667777777666542 2222 455567888776
No 245
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.52 E-value=2.3e-06 Score=80.50 Aligned_cols=184 Identities=16% Similarity=0.193 Sum_probs=117.0
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhc----
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVG---- 244 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g---- 244 (376)
.+.|+.-+++.+..++...+.++. -+.|-.+-|||++||||.++++.+|+.+-..- -.|.++..|+.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hF 153 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHF 153 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccC
Confidence 378998888888888876444331 13344566899999999999999999652111 11222222211
Q ss_pred -------hh-hHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHH---hcCCCCCCCeEEEEE
Q 017161 245 -------EG-ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ---LDGFDARGNIKVLMA 313 (376)
Q Consensus 245 -------~~-~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~---ld~~~~~~~v~VI~t 313 (376)
.- .+....+...+..++.+|.+|||+|.+ .+....++--+|+. .+|.+. .+.++|+-
T Consensus 154 P~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~f-rkaIFIfL 221 (344)
T KOG2170|consen 154 PHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDF-RKAIFIFL 221 (344)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccc-cceEEEEE
Confidence 11 122233445556778889999999999 67777777777763 333333 34556666
Q ss_pred eCCC-----------------------CCCCc-----------------cccCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 017161 314 TNRP-----------------------DTLDP-----------------ALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 314 Tn~~-----------------------~~ld~-----------------allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
+|.- ..+.| .+....++|.-|.|-+.+......-++.+++
T Consensus 222 SN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~ 301 (344)
T KOG2170|consen 222 SNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELR 301 (344)
T ss_pred cCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHH
Confidence 6621 11222 2223346788899999999999999999999
Q ss_pred cCCCCCccc-HHHHHHHCCCC
Q 017161 354 TMNCERDIR-FELLARLCPNS 373 (376)
Q Consensus 354 ~~~~~~~vd-l~~lA~~t~g~ 373 (376)
+.++..+.+ ++.+|..+.-|
T Consensus 302 ~rg~~~d~~~~erva~~l~ff 322 (344)
T KOG2170|consen 302 KRGLAPDQDFVERVANSLSFF 322 (344)
T ss_pred hcccccchHHHHHHHHhhccc
Confidence 888876654 46666655433
No 246
>PRK15115 response regulator GlrR; Provisional
Probab=98.51 E-value=6.9e-07 Score=90.46 Aligned_cols=150 Identities=24% Similarity=0.386 Sum_probs=92.3
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhh--
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV-- 243 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~-- 243 (376)
.+.|.......+.+.+... ......++|+|++|||||++|+++.... +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~ 203 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV-----------AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLES 203 (444)
T ss_pred cccccCHHHHHHHHHHHhh-----------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHH
Confidence 4666666666555544331 1234579999999999999999998864 57999999987633211
Q ss_pred ---chhhH-------HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCC----CCCC
Q 017161 244 ---GEGAR-------MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD----ARGN 307 (376)
Q Consensus 244 ---g~~~~-------~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~----~~~~ 307 (376)
|.... ....+|..+ ...+|||||||.+ +...|..|..++..-. ... ...+
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~ 269 (444)
T PRK15115 204 ELFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDIDID 269 (444)
T ss_pred HhcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceeeee
Confidence 11000 000112222 2359999999999 7888999998886532 111 1126
Q ss_pred eEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 308 IKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 308 v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
+.+|+||+.. ..+.+.|.. |+ ..+.+..|...+|.+
T Consensus 270 ~rii~~~~~~l~~~~~~~~f~~~l~~--~l-~~~~i~lPpLr~R~e 312 (444)
T PRK15115 270 VRIISATHRDLPKAMARGEFREDLYY--RL-NVVSLKIPALAERTE 312 (444)
T ss_pred EEEEEeCCCCHHHHHHcCCccHHHHH--hh-ceeeecCCChHhccc
Confidence 8899999853 122222222 33 246677787777754
No 247
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.50 E-value=3.7e-06 Score=84.80 Aligned_cols=187 Identities=14% Similarity=0.148 Sum_probs=107.6
Q ss_pred CCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCce
Q 017161 151 DPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (376)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~ 230 (376)
.+.....|++++.+.+.+++.-...-+.++++|+... ..+ ..--..+-+||+||+||||||.++.++.++|..+
T Consensus 65 ~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~----~~~--~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 65 KEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQV----AEF--TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred CccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHH----HHh--ccCCCceEEEEeCCCCCCchhHHHHHHHhhCcee
Confidence 4455678999999999999999999999999998720 000 0112234688999999999999999999998777
Q ss_pred EEEech-------hh------hHhhhchhhHHHHHHHHHH------------HcCCCeEEEEcCCcccccCCCCCCCCCC
Q 017161 231 IRVIGS-------EL------VQKYVGEGARMVRELFQMA------------RSKKACIVFFDEVDAIGGARFDDGVGGD 285 (376)
Q Consensus 231 i~v~~~-------el------~~~~~g~~~~~~~~lf~~a------------~~~~psIl~iDEiD~l~~~r~~~~~~~~ 285 (376)
+.-.-+ .+ ....+..--.........+ ...++.+|++||+=..+..- +
T Consensus 139 ~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------~ 211 (634)
T KOG1970|consen 139 IEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------D 211 (634)
T ss_pred eeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-------h
Confidence 654411 11 1101111111111111222 11345699999986654321 2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC--CCCCCccccC------CCCcceEEEecCCCHHHHHHHHHHHhccCC
Q 017161 286 NEVQRTMLEIVNQLDGFDARGNIKVLMATNR--PDTLDPALLR------PGRLDRKVEFGLPDLESRTQIFKIHTRTMN 356 (376)
Q Consensus 286 ~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~--~~~ld~allr------~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~ 356 (376)
.+.++.+++++...- .-. +||+.|+. ++..++..+. ..|+ ..|.|.+-...-.+..|+..++...
T Consensus 212 ~~~f~evL~~y~s~g----~~P-lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~ 284 (634)
T KOG1970|consen 212 SETFREVLRLYVSIG----RCP-LIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEA 284 (634)
T ss_pred HHHHHHHHHHHHhcC----CCc-EEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhc
Confidence 333444444443321 122 34444443 3333333322 1244 4678877777777777777775443
No 248
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.49 E-value=3.4e-07 Score=93.15 Aligned_cols=158 Identities=17% Similarity=0.277 Sum_probs=97.3
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh--
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY-- 242 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~-- 242 (376)
..++|......++.+.+.. .......+++.|.+||||+++|+++.... +.+|+.++|..+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~-----------~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGR-----------LSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred cceeecCHHHHHHHHHHHH-----------HhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 4588888888887776643 11334579999999999999999998864 5799999987763322
Q ss_pred ---hchhhHH----H---HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcC--CC----CCC
Q 017161 243 ---VGEGARM----V---RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD----ARG 306 (376)
Q Consensus 243 ---~g~~~~~----~---~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~--~~----~~~ 306 (376)
+|..... . ...|. ......||||||+.+ +.+.|..|++++..-.. .. ...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeee
Confidence 1111000 0 01111 123468999999998 78889999988865321 00 112
Q ss_pred CeEEEEEeCCC-------CCCCccccCCCCcc-eEEEecCCC--HHHHHHHHHHHh
Q 017161 307 NIKVLMATNRP-------DTLDPALLRPGRLD-RKVEFGLPD--LESRTQIFKIHT 352 (376)
Q Consensus 307 ~v~VI~tTn~~-------~~ld~allr~gRfd-~~i~~~~Pd--~~~r~~Il~~~~ 352 (376)
++.||+||+.. ..+.+.|+. |+. ..|.+|+.. .++...++..++
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l 322 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFL 322 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHH
Confidence 57889988754 233444444 443 244444443 234444555444
No 249
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.48 E-value=2.3e-07 Score=89.03 Aligned_cols=161 Identities=19% Similarity=0.301 Sum_probs=106.5
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechh
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE 237 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~e 237 (376)
..+...|+.+++.+..++.+.+..... . .-...+||.|.+||||-++|+++.... ..+|+.++|..
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~----------A-mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~ 265 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQKL----------A-MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCAS 265 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHHHh----------h-ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCC
Confidence 345667888888888877776555321 1 123469999999999999999998755 78999999976
Q ss_pred hhHh-----hhchhh--HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCCC----
Q 017161 238 LVQK-----YVGEGA--RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDA---- 304 (376)
Q Consensus 238 l~~~-----~~g~~~--~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~---- 304 (376)
+-.. .+|... .--..+|+.|..+ .+|+|||..+ ++..|..++.+|+.-. ....
T Consensus 266 lPe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~Ev 331 (511)
T COG3283 266 LPEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHEV 331 (511)
T ss_pred CchhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcceE
Confidence 6433 122211 2224578887766 8999999887 8899999999997421 1111
Q ss_pred CCCeEEEEEeCCC--CCCCccccCCCCcc--eEEEecCCCHHHHHH
Q 017161 305 RGNIKVLMATNRP--DTLDPALLRPGRLD--RKVEFGLPDLESRTQ 346 (376)
Q Consensus 305 ~~~v~VI~tTn~~--~~ld~allr~gRfd--~~i~~~~Pd~~~r~~ 346 (376)
.-+|.||+||..+ +.....-.|...|. .++.+..|...+|..
T Consensus 332 ~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~ 377 (511)
T COG3283 332 HVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQ 377 (511)
T ss_pred EEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcc
Confidence 1269999999864 22233323322232 256666776666543
No 250
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=2.7e-06 Score=81.72 Aligned_cols=124 Identities=10% Similarity=0.081 Sum_probs=89.2
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCC-----------c--eEEEe--chhhhHhhhchhhHHHHHHHHHHHc-----C
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDA-----------C--FIRVI--GSELVQKYVGEGARMVRELFQMARS-----K 260 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~-----------~--~i~v~--~~el~~~~~g~~~~~~~~lf~~a~~-----~ 260 (376)
-+..+||+|+.|+||+.+|+.+++.+.+ + +..++ +.. -+...++++.+.... +
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcccC
Confidence 3457889999999999999999998622 1 22222 111 112345555444421 3
Q ss_pred CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCC
Q 017161 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPD 340 (376)
Q Consensus 261 ~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd 340 (376)
..-|++||++|.+ +...++.|+..|++ +..++++|.+|+.++.+-|++++ |+ ..++|.+|+
T Consensus 90 ~~KvvII~~~e~m-----------~~~a~NaLLK~LEE-----Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~ 150 (299)
T PRK07132 90 QKKILIIKNIEKT-----------SNSLLNALLKTIEE-----PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPD 150 (299)
T ss_pred CceEEEEeccccc-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCC
Confidence 5569999999888 56667777777765 56778888888888999999998 77 789999999
Q ss_pred HHHHHHHHHH
Q 017161 341 LESRTQIFKI 350 (376)
Q Consensus 341 ~~~r~~Il~~ 350 (376)
.++....+..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 9888777654
No 251
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.46 E-value=9.2e-07 Score=85.05 Aligned_cols=137 Identities=18% Similarity=0.278 Sum_probs=76.5
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCCce-EEEechhhhHh-------hhchhhHHHHHHHHHHHcCCCeEEEEcCC
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACF-IRVIGSELVQK-------YVGEGARMVRELFQMARSKKACIVFFDEV 270 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~~~-i~v~~~el~~~-------~~g~~~~~~~~lf~~a~~~~psIl~iDEi 270 (376)
..+++|++|||+-|+|||+|.-.+...+...- .++....++.. ..|+..-.-...-+.+. ...||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~--~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA--ETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh--cCCEEEeeee
Confidence 35789999999999999999999998774322 33332333222 12322111111111111 2249999998
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCCCccccCCCCcceEEEecCCCHHHHHHHHH
Q 017161 271 DAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349 (376)
Q Consensus 271 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~-~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~ 349 (376)
..- +-.-.-.+..|++.+- ..+|++++|+|. |+.|-+.=+...|| +| -.++++
T Consensus 140 ~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~F-----LP------~I~li~ 193 (367)
T COG1485 140 EVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERF-----LP------AIDLIK 193 (367)
T ss_pred eec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhh-----HH------HHHHHH
Confidence 653 3333445556776654 458999999997 45544332222233 32 244555
Q ss_pred HHhccCCCCCcccH
Q 017161 350 IHTRTMNCERDIRF 363 (376)
Q Consensus 350 ~~~~~~~~~~~vdl 363 (376)
.++.-++++..+|+
T Consensus 194 ~~~~v~~vD~~~DY 207 (367)
T COG1485 194 SHFEVVNVDGPVDY 207 (367)
T ss_pred HheEEEEecCCccc
Confidence 56555555544443
No 252
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=2e-06 Score=82.01 Aligned_cols=143 Identities=14% Similarity=0.186 Sum_probs=94.0
Q ss_pred cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceE--------EEechhhhHh---
Q 017161 173 CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI--------RVIGSELVQK--- 241 (376)
Q Consensus 173 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i--------~v~~~el~~~--- 241 (376)
+..+++.++.++.. -+.+..+||+|| +||+++|+++|..+.+.-. +-+|..+...
T Consensus 7 q~~~~~~L~~~~~~------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQ------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHc------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45566677777654 145678999996 6899999999986632110 0001111000
Q ss_pred ---hh---ch--hhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeE
Q 017161 242 ---YV---GE--GARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK 309 (376)
Q Consensus 242 ---~~---g~--~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 309 (376)
++ |. ....+|++...+. .+...|++||++|.+ +....+.|+..|++ +..+++
T Consensus 73 D~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE-----Pp~~t~ 136 (290)
T PRK07276 73 DVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE-----PQSEIY 136 (290)
T ss_pred CeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC-----CCCCeE
Confidence 00 11 2245566555443 234469999999998 67778888777765 567789
Q ss_pred EEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHH
Q 017161 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349 (376)
Q Consensus 310 VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~ 349 (376)
+|.+|+.++.+-|.+++ |+ ..+.|+. +.+...+++.
T Consensus 137 ~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 137 IFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 99999999999999999 88 7788865 5555555553
No 253
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=1.4e-06 Score=81.36 Aligned_cols=121 Identities=7% Similarity=0.025 Sum_probs=81.5
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCce------EEEechhhhHh------h---h--chhhHHHHHHHHHHH----
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACF------IRVIGSELVQK------Y---V--GEGARMVRELFQMAR---- 258 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~------i~v~~~el~~~------~---~--g~~~~~~~~lf~~a~---- 258 (376)
.+|..+||+||+|+||..+|.++|..+-+.- .+-+|..+... + . .-+...+|++.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4577899999999999999999998753211 00000001000 0 0 012233444443322
Q ss_pred c-CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEec
Q 017161 259 S-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (376)
Q Consensus 259 ~-~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~ 337 (376)
. ...-|++|+++|.+ +.+..+.|+.+|++ +..++++|.+|+.++.+-|.+++ |+ ..+.|+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RC-VQYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--he-eeeecC
Confidence 1 23569999999998 77778888888775 67889999999999999999999 87 456666
Q ss_pred CC
Q 017161 338 LP 339 (376)
Q Consensus 338 ~P 339 (376)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 65
No 254
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.45 E-value=7e-07 Score=81.08 Aligned_cols=116 Identities=18% Similarity=0.274 Sum_probs=67.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhh-----------------------chhhHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV-----------------------GEGARMVR 251 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~-----------------------g~~~~~~~ 251 (376)
|++...-++|+||||||||+++..++... +...+.++..++....+ .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 77888889999999999999999988643 55677777654111100 01111244
Q ss_pred HHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 252 ~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
.+...+....+++|+||-+.++......+ ......+.+.+++..+..+....++.+|+|...
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~---~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~ 149 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSD---DRISRNRELARQLTLLLSLARKKNLAVVITNQV 149 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCC---ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEccc
Confidence 44445556688999999999885421111 111122233333333332333556777776543
No 255
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.37 E-value=3.3e-06 Score=85.66 Aligned_cols=114 Identities=22% Similarity=0.353 Sum_probs=70.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh------hch--------hhHHHHHHHHHHHcC
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VGE--------GARMVRELFQMARSK 260 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~------~g~--------~~~~~~~lf~~a~~~ 260 (376)
|+.+...++|+|+||+|||+|+..+|... +...++++..+-.... .|. .+..+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 78888889999999999999999998865 5677777765543321 111 112245566667777
Q ss_pred CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 261 ~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
.|.+|+||.+..+.....++..+........+..|..... ..++.+|++++
T Consensus 156 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak----~~~itvilv~h 206 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK----QRGIAVFLVGH 206 (446)
T ss_pred CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH----HcCCEEEEEee
Confidence 8999999999988654322211222222233333433332 34566666654
No 256
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.37 E-value=4e-06 Score=78.87 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=53.0
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC------------CCCCCccccCCCC
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR------------PDTLDPALLRPGR 329 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~------------~~~ld~allr~gR 329 (376)
|.||||||++.+ +-+....|...+.. .-.-++|++||+ |..++-.|+. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~------d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN------DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh------ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 568888888877 55555555555432 223457788885 4566667776 6
Q ss_pred cceEEEecCCCHHHHHHHHHHHhccCCC
Q 017161 330 LDRKVEFGLPDLESRTQIFKIHTRTMNC 357 (376)
Q Consensus 330 fd~~i~~~~Pd~~~r~~Il~~~~~~~~~ 357 (376)
. .+|...+.+.++.++||++.+..-.+
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv 376 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDV 376 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhcc
Confidence 5 57777888999999999999865444
No 257
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.36 E-value=6.6e-06 Score=72.96 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=61.1
Q ss_pred eeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh------hch-----------------------hh-----
Q 017161 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VGE-----------------------GA----- 247 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~------~g~-----------------------~~----- 247 (376)
++++||||||||+++..++... +.+.+.++..+-...+ .|. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887643 5566666543221110 000 00
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 248 ~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
..+..+...+....|.+++||++..+... ........+..++..+.. .++.+|++++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~~ 141 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEecccc
Confidence 11233444455678899999999887532 123334445556655542 2556777776543
No 258
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.35 E-value=7.8e-07 Score=78.48 Aligned_cols=59 Identities=29% Similarity=0.482 Sum_probs=37.6
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc---eEEEechhh
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVIGSEL 238 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~---~i~v~~~el 238 (376)
++|.+++++++...+.. . .-..++.++|+|++|+|||+++++++..+... ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~~-~---------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A---------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T---------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H---------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 67999999999988852 1 12446789999999999999999998865322 666555444
No 259
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.34 E-value=2.9e-06 Score=82.61 Aligned_cols=138 Identities=20% Similarity=0.335 Sum_probs=78.1
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCce--EEEechhhhHhh----------hc------------hhhHHHHHHHH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACF--IRVIGSELVQKY----------VG------------EGARMVRELFQ 255 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~--i~v~~~el~~~~----------~g------------~~~~~~~~lf~ 255 (376)
.+|+|++|||.-|||||+|.-.+...+.... -+|...+++... .| +.-..+.+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~--- 188 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVAD--- 188 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHH---
Confidence 4689999999999999999999886542210 112222222111 00 01111111
Q ss_pred HHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCCCccccCCCCcceEE
Q 017161 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLDPALLRPGRLDRKV 334 (376)
Q Consensus 256 ~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~-~~~ld~allr~gRfd~~i 334 (376)
.. ....++|+|||+..- +-.-.-.|.+|+..+- ..++++++|+|+ |+.|...=+. +..
T Consensus 189 eI-a~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQ-----R~~ 247 (467)
T KOG2383|consen 189 EI-AEEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQ-----REN 247 (467)
T ss_pred HH-hhhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchh-----hhh
Confidence 11 122469999998653 3233334456666553 458999999998 4555432222 223
Q ss_pred EecCCCHHHHHHHHHHHhccCCCCCcccHHHHH
Q 017161 335 EFGLPDLESRTQIFKIHTRTMNCERDIRFELLA 367 (376)
Q Consensus 335 ~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA 367 (376)
.+| -..+|+.++.-..+.+.+|+...+
T Consensus 248 F~P------fI~~L~~rc~vi~ldS~vDYR~~~ 274 (467)
T KOG2383|consen 248 FIP------FIALLEERCKVIQLDSGVDYRRKA 274 (467)
T ss_pred hhh------HHHHHHHhheEEecCCccchhhcc
Confidence 333 255677777777777777777333
No 260
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.33 E-value=1.5e-06 Score=70.67 Aligned_cols=23 Identities=43% Similarity=0.803 Sum_probs=20.7
Q ss_pred eeeecCCCChHHHHHHHHHHhcC
Q 017161 205 VLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l~ 227 (376)
|.||||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998764
No 261
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.32 E-value=1.1e-06 Score=88.86 Aligned_cols=150 Identities=21% Similarity=0.339 Sum_probs=90.8
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhh--
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYV-- 243 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~-- 243 (376)
.+.|.......+.+.+... ......++++|.+||||+++|+++.... +.+|+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~-----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~ 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV-----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES 208 (441)
T ss_pred ceEecCHHHHHHHHHHhhc-----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH
Confidence 3566666666665555431 1334679999999999999999998754 57999999986643221
Q ss_pred ---chhhHH-------HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcC--CC----CCCC
Q 017161 244 ---GEGARM-------VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG--FD----ARGN 307 (376)
Q Consensus 244 ---g~~~~~-------~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~--~~----~~~~ 307 (376)
|..... ...++.. ....+||||||+.+ +...|..++.++..-.- .. ...+
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeec
Confidence 110000 0011122 23569999999999 77888888888764221 10 1125
Q ss_pred eEEEEEeCCCCCCCccccCCCCcce-------EEEecCCCHHHHHH
Q 017161 308 IKVLMATNRPDTLDPALLRPGRLDR-------KVEFGLPDLESRTQ 346 (376)
Q Consensus 308 v~VI~tTn~~~~ld~allr~gRfd~-------~i~~~~Pd~~~r~~ 346 (376)
+.+|+||+..- .....+|+|.. .+.+..|...+|.+
T Consensus 275 ~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~ 317 (441)
T PRK10365 275 VRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRRE 317 (441)
T ss_pred eEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcch
Confidence 67888887631 12223334422 46666777766644
No 262
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.31 E-value=4.5e-06 Score=82.62 Aligned_cols=114 Identities=21% Similarity=0.348 Sum_probs=69.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh------hch--------hhHHHHHHHHHHHcC
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VGE--------GARMVRELFQMARSK 260 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~------~g~--------~~~~~~~lf~~a~~~ 260 (376)
|+.+..-++|+|+||+|||+|+..+|... +...++++..+-.... +|. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 67888889999999999999999998754 3466677665432211 111 112245566666777
Q ss_pred CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 261 ~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
.|.+|+||.|..+.....+...+....+...+..|..... ..++.+|++.+
T Consensus 158 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak----~~~itvilvgh 208 (372)
T cd01121 158 KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK----ERNIPIFIVGH 208 (372)
T ss_pred CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH----HcCCeEEEEee
Confidence 8999999999988644322211222223333333433332 34566666654
No 263
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.29 E-value=4e-06 Score=77.37 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=24.4
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.+...+-|.||+|||||||.+.+|...
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34566678899999999999999999853
No 264
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.29 E-value=5.3e-06 Score=72.61 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=69.8
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEechhh--------hHhhhc-----hhhHHHHHHHHHHHcCC
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSEL--------VQKYVG-----EGARMVRELFQMARSKK 261 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~el--------~~~~~g-----~~~~~~~~lf~~a~~~~ 261 (376)
+.+.+...+.|.||+|+|||||++.++..... --+.++...+ ....++ .+...-+-.+..|....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 34577788999999999999999999986521 1122322211 111111 11223344566666788
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|.++++||- .++.+....+.+.+++.++. ..+..+|++|+..+
T Consensus 101 p~illlDEP----------~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~ 143 (163)
T cd03216 101 ARLLILDEP----------TAALTPAEVERLFKVIRRLR----AQGVAVIFISHRLD 143 (163)
T ss_pred CCEEEEECC----------CcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 999999994 34458888888988888763 12456777888654
No 265
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.27 E-value=4.5e-06 Score=80.85 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=71.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh---cCCceEEEechhhhHh----------------hhchhhHHHHHHHHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK----------------YVGEGARMVRELFQMAR 258 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~---l~~~~i~v~~~el~~~----------------~~g~~~~~~~~lf~~a~ 258 (376)
|++..+-+.++||||||||+||-.++.. .+...+.++..+-... .....+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 6788888999999999999999988754 3666777765432111 01112233333344456
Q ss_pred cCCCeEEEEcCCcccccCC-CCCCCCC-CH-HHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 259 SKKACIVFFDEVDAIGGAR-FDDGVGG-DN-EVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r-~~~~~~~-~~-~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
...+++|++|-+-++.+.. .+...+. .. ...+.+.+.+..+.+.-...++.+|++...
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQv 191 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQL 191 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 6788999999999987632 1111110 11 122344555555544445667777777553
No 266
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.26 E-value=5.7e-06 Score=80.03 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHh----------------hhchhhHHHHHHHHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----------------YVGEGARMVRELFQMAR 258 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~----------------~~g~~~~~~~~lf~~a~ 258 (376)
|++....++|+||||||||+||..++... +...+.++..+.... .....+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67888889999999999999988776643 566667765442221 01112233333444456
Q ss_pred cCCCeEEEEcCCcccccCC-CCCCCCC-CH-HHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 259 SKKACIVFFDEVDAIGGAR-FDDGVGG-DN-EVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r-~~~~~~~-~~-~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
...+.+|+||-+.++.+.. .+...+. .. ...+.+.+++..+.+.-...++.+|+|...
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQv 191 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQI 191 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 6788999999999987632 1111111 11 122334455555554445667878877553
No 267
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.23 E-value=1.5e-05 Score=73.87 Aligned_cols=110 Identities=15% Similarity=0.284 Sum_probs=64.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh------hc------------------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VG------------------------ 244 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~------~g------------------------ 244 (376)
|+++...++|.||||||||+++..++... +...+.+...+-...+ .|
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 56777889999999999999976554433 4555555543211110 00
Q ss_pred -hhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 245 -EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 245 -~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+....+..+...+....|.++++|++-.+... ..++...+.+.+++..+. .. +..+++|++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~------~~d~~~~~~l~~~l~~l~---~~-g~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN------DASEVAVNDLMAFFKRIS---SL-NKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC------CcchHHHHHHHHHHHHHH---hC-CCEEEEEeccc
Confidence 01223344555555567889999999876421 113334456666666553 12 33566677643
No 268
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.23 E-value=5.6e-06 Score=76.12 Aligned_cols=118 Identities=18% Similarity=0.336 Sum_probs=66.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh----hHhhhc-------------------hhhHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL----VQKYVG-------------------EGARMVR 251 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el----~~~~~g-------------------~~~~~~~ 251 (376)
|++...-++|+||||+|||+++..+|... +...+.++...+ ...... +....+.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 77778889999999999999999998744 566777776521 111111 0011122
Q ss_pred HHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 252 ~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
.+..... ..+.+++||-+.++....... .....+..+.+.+++..+..+....++.||+|....
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~ 162 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVY 162 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccce
Confidence 2222222 578899999999886432111 011222233444443333322234567777765543
No 269
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.22 E-value=1.1e-05 Score=71.53 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=70.6
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCCc-------------eEEEechhhhHhh----------hch--hhHHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------------FIRVIGSELVQKY----------VGE--GARMVRE 252 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------------~i~v~~~el~~~~----------~g~--~~~~~~~ 252 (376)
-+.++.-+.|.||+|+|||||.++++...+.. +..+...+++..+ ... .....+-
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl 96 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRV 96 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHH
Confidence 45667779999999999999999997432211 1111111111111 000 1112233
Q ss_pred HHHHHHcCC--CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCc
Q 017161 253 LFQMARSKK--ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (376)
Q Consensus 253 lf~~a~~~~--psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRf 330 (376)
.+..|.... |.++++||-- .+.+......+.+++..+. ..+..||++|+..+. .+ .+
T Consensus 97 ~laral~~~~~p~llLlDEPt----------~~LD~~~~~~l~~~l~~~~----~~g~tvIivSH~~~~-----~~--~~ 155 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPS----------TGLHQQDINQLLEVIKGLI----DLGNTVILIEHNLDV-----LS--SA 155 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHH-----HH--hC
Confidence 445555567 8999999943 3457888888888887653 134567888887643 23 45
Q ss_pred ceEEEec
Q 017161 331 DRKVEFG 337 (376)
Q Consensus 331 d~~i~~~ 337 (376)
|+.+.+.
T Consensus 156 d~i~~l~ 162 (176)
T cd03238 156 DWIIDFG 162 (176)
T ss_pred CEEEEEC
Confidence 6666664
No 270
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.21 E-value=8.3e-06 Score=73.86 Aligned_cols=110 Identities=15% Similarity=0.274 Sum_probs=62.8
Q ss_pred hcCCCCCCceeeecCCCChHHHHHHHHHHh-----cCCce-------------EEEechhhhH----hhhchhhHHHHHH
Q 017161 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANR-----TDACF-------------IRVIGSELVQ----KYVGEGARMVREL 253 (376)
Q Consensus 196 ~~g~~~~~~vLL~GppGtGKT~LakalA~~-----l~~~~-------------i~v~~~el~~----~~~g~~~~~~~~l 253 (376)
.+.+...+.++|.||+|+||||+++.++.. .|.++ ..+...+-+. .+..+ ...+..+
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e-~~~~~~i 97 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAE-LRRLKEI 97 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHH-HHHHHHH
Confidence 334455577899999999999999999863 23321 1111111100 11111 1345666
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l-~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
++.+....|+++++||.-+- .+......+ ..++..+. ..+..+|++|+..+.+
T Consensus 98 L~~~~~~~p~llllDEp~~g----------lD~~~~~~l~~~ll~~l~----~~~~tiiivTH~~~~~ 151 (199)
T cd03283 98 VEKAKKGEPVLFLLDEIFKG----------TNSRERQAASAAVLKFLK----NKNTIGIISTHDLELA 151 (199)
T ss_pred HHhccCCCCeEEEEecccCC----------CCHHHHHHHHHHHHHHHH----HCCCEEEEEcCcHHHH
Confidence 66655458899999996432 244433333 34555553 2256688888876543
No 271
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.18 E-value=1.4e-05 Score=70.74 Aligned_cols=109 Identities=19% Similarity=0.253 Sum_probs=68.3
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcC--CceEEEechhhh------Hh---h----------------hch--hh
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV------QK---Y----------------VGE--GA 247 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~--~~~i~v~~~el~------~~---~----------------~g~--~~ 247 (376)
+.+.++..+.|.||+|+|||||+++++.... .--+.+++..+. .. | ... +.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 3456778899999999999999999998642 111222222110 00 0 000 11
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 248 ~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
...+-.+..|-...|.++++||-- ++.+......+.+++..+. . +..||++|+.++.+
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~----------~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPT----------VGLDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCc----------ccCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 222334555566788999999943 3457888888888888763 2 35677788866543
No 272
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.18 E-value=6.5e-06 Score=88.80 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=125.8
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccC-chhhhHhcCCCCCC--ceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPML-HPEKFVKLGIDPPK--GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~-~~~~~~~~g~~~~~--~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
..|.+++.+....++.|.......+.+++...-. .+..|...+..... .++++||||+|||+.+.++|.+++..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 4688888888888888888777788777765311 22223322222222 36999999999999999999999999999
Q ss_pred EechhhhHhh-----hch--hhHHHHHHH---HH--HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 017161 233 VIGSELVQKY-----VGE--GARMVRELF---QM--ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (376)
Q Consensus 233 v~~~el~~~~-----~g~--~~~~~~~lf---~~--a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 300 (376)
.+.++..+++ ++. ....+...| .. .......||+|||+|.+.. .+......+..++.
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~~--- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLCK--- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHHH---
Confidence 9988654432 111 112233333 00 1112234999999999854 13334444555544
Q ss_pred CCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCC
Q 017161 301 GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCP 371 (376)
Q Consensus 301 ~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~ 371 (376)
.....+|+++|........-+. |-+..+.|+.|+...+..-+...+..-.+. .+-.++++..++.
T Consensus 457 ----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~ 522 (871)
T KOG1968|consen 457 ----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSG 522 (871)
T ss_pred ----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcc
Confidence 2345689999987655543333 555789999999998887777666443322 2234677776664
No 273
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.18 E-value=4.1e-06 Score=77.97 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 251 ~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
|-++..|....|.+++||| +.++.|...+..+.++|.++. ..++.|++.|+....+
T Consensus 147 RV~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l~----~eg~tIl~vtHDL~~v 202 (254)
T COG1121 147 RVLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKELR----QEGKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCcHHh
Confidence 4556677778899999999 566779999999999999885 2378899999976543
No 274
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=8.7e-06 Score=71.69 Aligned_cols=109 Identities=28% Similarity=0.371 Sum_probs=68.2
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEechhhh-------Hh---h-------h--------chhhHH
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELV-------QK---Y-------V--------GEGARM 249 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~el~-------~~---~-------~--------g~~~~~ 249 (376)
+.+.+...+.|.||+|+|||||++.++..... --+.+++..+. .. | . -.+...
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 34567788999999999999999999986421 11222221110 00 0 0 000111
Q ss_pred HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 250 ~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
-+-.+..+....|.++++|| +..+.+......+.+++.++. . +..+|++|+..+.+
T Consensus 103 ~rl~la~al~~~p~llllDE----------P~~gLD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 158 (171)
T cd03228 103 QRIAIARALLRDPPILILDE----------ATSALDPETEALILEALRALA----K-GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHhcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 22334555567889999999 344557888888888888763 2 36688888876544
No 275
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.17 E-value=2e-05 Score=68.07 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
....++++|+||+||||++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34569999999999999999999876
No 276
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.16 E-value=5.9e-06 Score=75.82 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=52.2
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechh--h--------hHhhhchhhHHHHHHHHHHH--cCCCeEEEEcC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE--L--------VQKYVGEGARMVRELFQMAR--SKKACIVFFDE 269 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e--l--------~~~~~g~~~~~~~~lf~~a~--~~~psIl~iDE 269 (376)
|..+||||+||+|||++|+.++.. ..++..+.+. + ...-....-..+.+.+..+. ...+.+||||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 567999999999999999999742 1122222211 0 00000111122233333332 34567999999
Q ss_pred Cccccc------CC-CCC---CCCCCHHHHHHHHHHHHHhc
Q 017161 270 VDAIGG------AR-FDD---GVGGDNEVQRTMLEIVNQLD 300 (376)
Q Consensus 270 iD~l~~------~r-~~~---~~~~~~~~~~~l~~ll~~ld 300 (376)
++.+.. .| ... ...+-..+...+..++..+.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~ 130 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLK 130 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHH
Confidence 998754 11 111 12233445666667776665
No 277
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.16 E-value=1.4e-05 Score=72.98 Aligned_cols=141 Identities=20% Similarity=0.223 Sum_probs=75.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhh----Hhhhc-------------------hhhHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV----QKYVG-------------------EGARMVR 251 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~----~~~~g-------------------~~~~~~~ 251 (376)
|+....-++|+|+||||||+++..+|... +...+.++..... ....+ +....+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 67788889999999999999999998764 4566666543211 11000 0011122
Q ss_pred HHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-----CccccC
Q 017161 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL-----DPALLR 326 (376)
Q Consensus 252 ~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l-----d~allr 326 (376)
.+...+. ..+++|+||-+..+........ .......+.+.+++..+..+....++.||++....... .|..-+
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~ 172 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGH 172 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCc
Confidence 3333333 3478999999988853211110 11122333444444433333345578788876643222 232100
Q ss_pred --CCCcceEEEecCCC
Q 017161 327 --PGRLDRKVEFGLPD 340 (376)
Q Consensus 327 --~gRfd~~i~~~~Pd 340 (376)
....|..|.+....
T Consensus 173 ~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 173 TLEHWSKVILRLEKLR 188 (218)
T ss_pred chhcceeEEEEEEEcC
Confidence 12456677776554
No 278
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.14 E-value=1e-05 Score=83.43 Aligned_cols=134 Identities=25% Similarity=0.310 Sum_probs=78.8
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEE-echhhhH--hhh---chhhHHHHHHHHHHHcCCCeEEEEcCCccccc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV-IGSELVQ--KYV---GEGARMVRELFQMARSKKACIVFFDEVDAIGG 275 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v-~~~el~~--~~~---g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~ 275 (376)
.-++||+|.||||||.+.+.+++-+..-.+.- .++.-+. .|+ +++.+.+-+-=. .......|-+|||+|++
T Consensus 462 ~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGA-LVLSD~GiCCIDEFDKM-- 538 (804)
T KOG0478|consen 462 DINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGA-LVLSDNGICCIDEFDKM-- 538 (804)
T ss_pred cceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCc-EEEcCCceEEchhhhhh--
Confidence 34799999999999999999998763322211 1111100 000 011111100000 00122348899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC-------------CCCccccCCCCcceEE
Q 017161 276 ARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLRPGRLDRKV 334 (376)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~VI~tTn~~~-------------~ld~allr~gRfd~~i 334 (376)
+...+..|.+.+++=. |+ .-+.+.-|||++|... .|+|.|++ |||.++
T Consensus 539 ---------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIy 607 (804)
T KOG0478|consen 539 ---------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIF 607 (804)
T ss_pred ---------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEE
Confidence 5566788888887621 21 1234677999999532 57899999 999765
Q ss_pred -EecCCCHHHHHHHHH
Q 017161 335 -EFGLPDLESRTQIFK 349 (376)
Q Consensus 335 -~~~~Pd~~~r~~Il~ 349 (376)
-++.||+..-+.|-.
T Consensus 608 lllD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 608 LLLDKPDERSDRRLAD 623 (804)
T ss_pred EEecCcchhHHHHHHH
Confidence 447777764444443
No 279
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.14 E-value=1.7e-05 Score=70.04 Aligned_cols=107 Identities=23% Similarity=0.354 Sum_probs=67.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEechhh--------hHh--h-------h--------chhhHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSEL--------VQK--Y-------V--------GEGARMV 250 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~el--------~~~--~-------~--------g~~~~~~ 250 (376)
-+.+...+.|.||+|+|||+|++.++..... --+.+++..+ ... | + -.+...-
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHH
Confidence 3456677999999999999999999986421 1122222111 000 0 0 0111223
Q ss_pred HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 251 ~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+-.+..|....|.++++||- ..+-+......+.+++..+. ..+..+|++|+..+
T Consensus 104 rv~la~al~~~p~~lllDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~ 157 (173)
T cd03246 104 RLGLARALYGNPRILVLDEP----------NSHLDVEGERALNQAIAALK----AAGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHhcCCCEEEEECC----------ccccCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHH
Confidence 34455666688999999994 34458888888888887763 12456788888654
No 280
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.14 E-value=1.5e-05 Score=68.28 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=64.7
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--eEEEechh---hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIGSE---LVQKYVGEGARMVRELFQMARSKKACIVFFDEVD 271 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~--~i~v~~~e---l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD 271 (376)
+.+.+...+.|.||+|+|||||+++++...... -+.++... ++..+ ..+ ..-+-.+..|....|.++++||-.
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G-~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGG-EKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHH-HHHHHHHHHHHhcCCCEEEEeCCc
Confidence 345677789999999999999999999865211 11111100 00001 111 122333455556788899999943
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 272 AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 272 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
.+-+......+.+++.++. ..+|++|+..+.
T Consensus 99 ----------~~LD~~~~~~l~~~l~~~~-------~til~~th~~~~ 129 (144)
T cd03221 99 ----------NHLDLESIEALEEALKEYP-------GTVILVSHDRYF 129 (144)
T ss_pred ----------cCCCHHHHHHHHHHHHHcC-------CEEEEEECCHHH
Confidence 3457777888888887651 357888887543
No 281
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.12 E-value=4e-05 Score=76.72 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=77.4
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccC
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~ 276 (376)
....++ -++|+||.+|||||+++.+.......++.++..++......- .. ....+..+.....+.||||||+.+
T Consensus 33 ~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d-~~~~~~~~~~~~~~yifLDEIq~v--- 106 (398)
T COG1373 33 LDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LD-LLRAYIELKEREKSYIFLDEIQNV--- 106 (398)
T ss_pred cccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HH-HHHHHHHhhccCCceEEEecccCc---
Confidence 333444 799999999999999999988876657777776664433221 11 112222222224469999999886
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHH
Q 017161 277 RFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
++..+.+..+.+... . ++++.+++...-....+-.-+||. ..+.+.+.+..+...
T Consensus 107 ---------~~W~~~lk~l~d~~~----~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 ---------PDWERALKYLYDRGN----L-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---------hhHHHHHHHHHcccc----c-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 446666666654321 1 333333322222222233345785 778888889888865
No 282
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.12 E-value=2e-05 Score=69.08 Aligned_cols=105 Identities=29% Similarity=0.377 Sum_probs=65.2
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--eEEEe--------chh--h-----hHhh----hc--hhhHHHHHH
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVI--------GSE--L-----VQKY----VG--EGARMVREL 253 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~--~i~v~--------~~e--l-----~~~~----~g--~~~~~~~~l 253 (376)
+.+.+...+.|.||+|+|||||++.++...... -+.++ ..+ + .... .. .+...-+-.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHH
Confidence 345677789999999999999999999864210 01111 110 1 0000 00 011222334
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+..|....|.++++||- .++-+...+..+.+++..+ +..+|++|++.+
T Consensus 102 laral~~~p~~lllDEP----------t~~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 102 FARLLLHKPKFVFLDEA----------TSALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHHHcCCCEEEEECC----------ccccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 55555678899999994 3345788888888888764 245788888754
No 283
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.11 E-value=2.2e-05 Score=69.75 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=65.8
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEechh---hhHhh-hchhhHHHHHHHHHHHcCCCeEEEEcCCcc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSE---LVQKY-VGEGARMVRELFQMARSKKACIVFFDEVDA 272 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~e---l~~~~-~g~~~~~~~~lf~~a~~~~psIl~iDEiD~ 272 (376)
+++...+.|.||+|+|||||++.++..... --+.++... +.+.. ...+ ..-+-.+..+....|.++++||-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG-q~qrv~laral~~~p~lllLDEP-- 98 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG-ELQRVAIAAALLRNATFYLFDEP-- 98 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH-HHHHHHHHHHHhcCCCEEEEECC--
Confidence 466778899999999999999999986421 112222211 11110 1111 22233455555678899999994
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
.++.+......+.+++.++. ..++..||++|+..+
T Consensus 99 --------ts~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~ 133 (177)
T cd03222 99 --------SAYLDIEQRLNAARAIRRLS---EEGKKTALVVEHDLA 133 (177)
T ss_pred --------cccCCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHH
Confidence 34457888888888887653 123355778888654
No 284
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.11 E-value=8.5e-06 Score=90.29 Aligned_cols=141 Identities=26% Similarity=0.299 Sum_probs=96.0
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH---hh----hch--hhHHHHH-HHHHHHcCCCeEEEEcCC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ---KY----VGE--GARMVRE-LFQMARSKKACIVFFDEV 270 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~---~~----~g~--~~~~~~~-lf~~a~~~~psIl~iDEi 270 (376)
-.+++||-|.||+|||+|+.++|+.+|..+++++.++-.. -+ .++ ++-.+++ -|-.|.+. ..-+++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehh
Confidence 3578999999999999999999999999999999876422 11 122 2222222 22233222 248999998
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhc---------CCCCCCCeEEEEEeCCC------CCCCccccCCCCcceEEE
Q 017161 271 DAIGGARFDDGVGGDNEVQRTMLEIVNQLD---------GFDARGNIKVLMATNRP------DTLDPALLRPGRLDRKVE 335 (376)
Q Consensus 271 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld---------~~~~~~~v~VI~tTn~~------~~ld~allr~gRfd~~i~ 335 (376)
.-. +..+..-|...|+.-. .|.-..+..|+||-|.. ..|+..++. || ..+.
T Consensus 1621 NLa-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~ 1686 (4600)
T COG5271 1621 NLA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVK 1686 (4600)
T ss_pred hhh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEE
Confidence 765 4445555555554321 23445678888888864 478899999 99 5778
Q ss_pred ecCCCHHHHHHHHHHHhccCC
Q 017161 336 FGLPDLESRTQIFKIHTRTMN 356 (376)
Q Consensus 336 ~~~Pd~~~r~~Il~~~~~~~~ 356 (376)
+...+.++...|.......++
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp~v~ 1707 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYPQVN 1707 (4600)
T ss_pred ecccccchHHHHHHhhCCccC
Confidence 888888888888777665543
No 285
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.10 E-value=3.8e-05 Score=71.06 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEech
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~ 236 (376)
|++.+..++++|+||||||+++.+++... +...+.+...
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 78888999999999999999999997642 5566666543
No 286
>PRK08118 topology modulation protein; Reviewed
Probab=98.09 E-value=1.6e-05 Score=69.96 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=62.4
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCC
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVG 283 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~ 283 (376)
.+++.||||+||||+|+.+++.++.+++.++.--....+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~-------------------------------------- 44 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGV-------------------------------------- 44 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCC--------------------------------------
Confidence 589999999999999999999999998777631100000000
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 017161 284 GDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 284 ~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
...+....+.+++. ..+ +|+-.|....++..+ . ++|..|.+..|...-..++++.+++
T Consensus 45 ~~~~~~~~~~~~~~-------~~~--wVidG~~~~~~~~~l-~--~~d~vi~Ld~p~~~~~~R~~~R~~~ 102 (167)
T PRK08118 45 PKEEQITVQNELVK-------EDE--WIIDGNYGGTMDIRL-N--AADTIIFLDIPRTICLYRAFKRRVQ 102 (167)
T ss_pred CHHHHHHHHHHHhc-------CCC--EEEeCCcchHHHHHH-H--hCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 01122222223222 122 455555555554333 2 6888999999988888888888775
No 287
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.08 E-value=3.5e-05 Score=78.35 Aligned_cols=115 Identities=19% Similarity=0.279 Sum_probs=68.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh------hch--------hhHHHHHHHHHHHcC
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VGE--------GARMVRELFQMARSK 260 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~------~g~--------~~~~~~~lf~~a~~~ 260 (376)
|+.+..-++|+|+||+|||+|+..+|... +...++++..+-.... +|- .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 78888889999999999999999998754 3466777765433221 110 011234555666677
Q ss_pred CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 261 ~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
.|.+++||.|..+.....+...+...++...+..|..... ..++.++++++.
T Consensus 170 ~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak----~~giTvllt~hv 221 (454)
T TIGR00416 170 NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAK----TRGIAIFIVGHV 221 (454)
T ss_pred CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHH----HhCCEEEEEecc
Confidence 8999999999987543211111112223333333333222 345667777653
No 288
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.08 E-value=9.5e-06 Score=76.88 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=65.8
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCC----------ceEEEe-chhhhHhh-------hch------hhHHHHHHHHHHH
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDA----------CFIRVI-GSELVQKY-------VGE------GARMVRELFQMAR 258 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~----------~~i~v~-~~el~~~~-------~g~------~~~~~~~lf~~a~ 258 (376)
.+++|.||+|+|||||+++++..+.. .+..++ ..++...+ +|. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999997632 111111 12332221 110 1112334666777
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-------ccccCCCCcc
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD-------PALLRPGRLD 331 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld-------~allr~gRfd 331 (376)
...|.+|++||+. .. ..+..++..+. .+..||++|+..+..+ ..|+..+-|+
T Consensus 192 ~~~P~villDE~~-------------~~---e~~~~l~~~~~-----~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~ 250 (270)
T TIGR02858 192 SMSPDVIVVDEIG-------------RE---EDVEALLEALH-----AGVSIIATAHGRDVEDLYKRPVFKELIENEAFE 250 (270)
T ss_pred hCCCCEEEEeCCC-------------cH---HHHHHHHHHHh-----CCCEEEEEechhHHHHHHhChHHHHHHhcCceE
Confidence 7899999999952 12 22333444432 2466899998643211 1223345677
Q ss_pred eEEEec
Q 017161 332 RKVEFG 337 (376)
Q Consensus 332 ~~i~~~ 337 (376)
+.+.+.
T Consensus 251 r~i~L~ 256 (270)
T TIGR02858 251 RYVVLS 256 (270)
T ss_pred EEEEEe
Confidence 776664
No 289
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.07 E-value=6.6e-06 Score=85.80 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=84.7
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCC--ceEEEechhhhHhhhchh--hHHH--------HHHHHHHHcCCCeEEEEcCC
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKYVGEG--ARMV--------RELFQMARSKKACIVFFDEV 270 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~el~~~~~g~~--~~~~--------~~lf~~a~~~~psIl~iDEi 270 (376)
.||+|.|++|||||+++++++..+.. +|..+..+--....+|.. +..+ ..++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 68999999999999999999998754 776654433323333332 1111 112222322 49999999
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHh------cCC--CCCCCeEEEEEeCCC---CCCCccccCCCCcceEEEecCC
Q 017161 271 DAIGGARFDDGVGGDNEVQRTMLEIVNQL------DGF--DARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEFGLP 339 (376)
Q Consensus 271 D~l~~~r~~~~~~~~~~~~~~l~~ll~~l------d~~--~~~~~v~VI~tTn~~---~~ld~allr~gRfd~~i~~~~P 339 (376)
..+ ++.++..|.+-+..- +|. ....++++|++-|.. ..|.++++. ||+..+.++.|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 988 778888888887753 222 223467778864432 458889999 99999999988
Q ss_pred CHHH
Q 017161 340 DLES 343 (376)
Q Consensus 340 d~~~ 343 (376)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7653
No 290
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.07 E-value=2.1e-06 Score=83.85 Aligned_cols=132 Identities=27% Similarity=0.337 Sum_probs=73.3
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh-----h---------hHhhhchhhHHHHHHHHHHHcCCCeEEE
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE-----L---------VQKYVGEGARMVRELFQMARSKKACIVF 266 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e-----l---------~~~~~g~~~~~~~~lf~~a~~~~psIl~ 266 (376)
..-++||.|.||||||.|.+.++.-..... ++++.. + ...|.-+. ..+-.|.. .|++
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~lea-----Galvlad~---Gicc 126 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEA-----GALVLADG---GICC 126 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE------HHHHCTT---SEEE
T ss_pred cccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeC-----CchhcccC---ceee
Confidence 345899999999999999998876543222 233222 1 11111111 12333333 4999
Q ss_pred EcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC-------------CCCcccc
Q 017161 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALL 325 (376)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~VI~tTn~~~-------------~ld~all 325 (376)
|||+|.+ +.+....|.+.|++-. |+ .-+.++.|++++|... .+++.|+
T Consensus 127 IDe~dk~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LL 195 (331)
T PF00493_consen 127 IDEFDKM-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLL 195 (331)
T ss_dssp ECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCH
T ss_pred ecccccc-----------cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhH
Confidence 9999998 5556777888777521 10 1123688999999754 4778999
Q ss_pred CCCCcceEEEe-cCCCHHHHHHHHHHHhcc
Q 017161 326 RPGRLDRKVEF-GLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 326 r~gRfd~~i~~-~~Pd~~~r~~Il~~~~~~ 354 (376)
+ |||..+.+ ..|+.+.-..+.+..++.
T Consensus 196 S--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 196 S--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp C--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred h--hcCEEEEeccccccccccccceEEEec
Confidence 9 99988765 677766666666655543
No 291
>PHA00729 NTP-binding motif containing protein
Probab=98.06 E-value=5.7e-06 Score=75.92 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.9
Q ss_pred CceeeecCCCChHHHHHHHHHHhcC
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
.+++|+|+||||||+||.++|..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 292
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.04 E-value=4.2e-05 Score=73.24 Aligned_cols=161 Identities=19% Similarity=0.302 Sum_probs=100.1
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHH---hcCCceEEEechhhhHh----
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN---RTDACFIRVIGSELVQK---- 241 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~---~l~~~~i~v~~~el~~~---- 241 (376)
.+.|..+.-+.+.+++..... ......+++.||.|+|||++...... +.+-.|+.+........
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~---------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL---------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH---------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 377888888888888875322 24567899999999999987665433 56777766554332211
Q ss_pred -----------------hhchhhHHHHHHHHHHHc-----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHh
Q 017161 242 -----------------YVGEGARMVRELFQMARS-----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL 299 (376)
Q Consensus 242 -----------------~~g~~~~~~~~lf~~a~~-----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 299 (376)
..|.....+..++..... +.+.|.++||||-+++ ..-|..+..+++.-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~----------h~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP----------HSRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc----------chhhHHHHHHHHHH
Confidence 122222223333333322 2344666789999864 23345555666554
Q ss_pred cCCCCCCCeEEEEEeCCCCC---CCccccCCCCcceE-EEecCC-CHHHHHHHHHHHh
Q 017161 300 DGFDARGNIKVLMATNRPDT---LDPALLRPGRLDRK-VEFGLP-DLESRTQIFKIHT 352 (376)
Q Consensus 300 d~~~~~~~v~VI~tTn~~~~---ld~allr~gRfd~~-i~~~~P-d~~~r~~Il~~~~ 352 (376)
+ .....+.||+.|.+.+. |.....+ ||... |++.++ ...+-..+++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 3 23557888988887654 4567777 99865 665444 6677777777766
No 293
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=3.1e-05 Score=67.04 Aligned_cols=109 Identities=24% Similarity=0.384 Sum_probs=67.0
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCCc--eEEEechhhh-------Hhhhc-----hhhHHHHHHHHHHHcCCCe
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIGSELV-------QKYVG-----EGARMVRELFQMARSKKAC 263 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~~--~i~v~~~el~-------~~~~g-----~~~~~~~~lf~~a~~~~ps 263 (376)
.+.+...+.|.||+|+|||+|+++++..+... -+.++...+. ...++ .+....+-.+..+-...|.
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPD 100 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCC
Confidence 45667789999999999999999999865321 2233332211 01011 0111222334445556788
Q ss_pred EEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 264 IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 264 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
++++||... +.+......+.+++.++.. . +..+|++|+..+.+
T Consensus 101 i~ilDEp~~----------~lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~ 143 (157)
T cd00267 101 LLLLDEPTS----------GLDPASRERLLELLRELAE---E-GRTVIIVTHDPELA 143 (157)
T ss_pred EEEEeCCCc----------CCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 999999543 3467777788888876531 2 35678888875543
No 294
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.04 E-value=2.2e-05 Score=69.68 Aligned_cols=110 Identities=25% Similarity=0.313 Sum_probs=67.6
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcC--CceEEEechhh--------hH-------------------hhhch--
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSEL--------VQ-------------------KYVGE-- 245 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~--~~~i~v~~~el--------~~-------------------~~~g~-- 245 (376)
+.+.+...+.|.||+|+|||||++.++.... .--+.+++..+ .. .....
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 3456777899999999999999999998652 11122222111 00 00000
Q ss_pred hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 246 ~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
+...-+-.+..|....|.++++||- ..+.+......+.+++..+. ...+..+|++|+.++.
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP----------~~~LD~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~ 160 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEP----------TSHLDIAHQIELLELLRRLA---RERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC----------ccCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 1111223344455678899999994 34457888888888888763 1224567888887653
No 295
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.03 E-value=4.4e-05 Score=70.06 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=45.9
Q ss_pred HHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcce
Q 017161 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDR 332 (376)
Q Consensus 253 lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~ 332 (376)
.+..|..+.|.||+-|| +...-+.+....++.++.++. ...+..||+.|+ |+.+.. ++|+
T Consensus 152 AIARAL~~~P~iilADE----------PTgnLD~~t~~~V~~ll~~~~---~~~g~tii~VTH-----d~~lA~--~~dr 211 (226)
T COG1136 152 AIARALINNPKIILADE----------PTGNLDSKTAKEVLELLRELN---KERGKTIIMVTH-----DPELAK--YADR 211 (226)
T ss_pred HHHHHHhcCCCeEEeeC----------ccccCChHHHHHHHHHHHHHH---HhcCCEEEEEcC-----CHHHHH--hCCE
Confidence 34455567899999999 444557777888888887763 234567888888 455555 7788
Q ss_pred EEEec
Q 017161 333 KVEFG 337 (376)
Q Consensus 333 ~i~~~ 337 (376)
.|.+.
T Consensus 212 ~i~l~ 216 (226)
T COG1136 212 VIELK 216 (226)
T ss_pred EEEEe
Confidence 87764
No 296
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=7.1e-05 Score=80.54 Aligned_cols=162 Identities=26% Similarity=0.344 Sum_probs=111.7
Q ss_pred cccccCc-HHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCceEEEec
Q 017161 167 YNDVGGC-KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIG 235 (376)
Q Consensus 167 ~~di~G~-~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~~i~v~~ 235 (376)
.+-++|. ++.++.+.+.+.. +..++-+|.|.||+|||.++.-+|... +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 3446665 8888888777765 334788999999999999999999864 345666666
Q ss_pred hhhh--HhhhchhhHHHHHHHHHHH-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 017161 236 SELV--QKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLM 312 (376)
Q Consensus 236 ~el~--~~~~g~~~~~~~~lf~~a~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~ 312 (376)
..+. .++.|+.+..+..+...+. .+..-||||||++.+.+.... .+..+..+.|..++ ..+.+.+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~~nlLkp~L-------~rg~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDAANLLKPLL-------ARGGLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHHHHhhHHHH-------hcCCeEEEe
Confidence 6544 3567888889999998887 556679999999999765422 11222223333332 244588898
Q ss_pred EeCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 313 ATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 313 tTn~~-----~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
||..- -.-+|++-| || ..+.++.|+.+.-..||......
T Consensus 322 atT~e~Y~k~iekdPalEr--rw-~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RW-QLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Cc-ceeEeccCcccchhhhhhhhhhh
Confidence 77632 345899999 99 46778889877655566554433
No 297
>PF14516 AAA_35: AAA-like domain
Probab=97.99 E-value=0.00025 Score=69.35 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=90.2
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHh-------h-----------hc----------h---
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK-------Y-----------VG----------E--- 245 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~-------~-----------~g----------~--- 245 (376)
+++..+.|+||..+|||+|...+.+.+ +...+.+++..+... + .+ +
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 356779999999999999999988755 566666665543110 0 00 0
Q ss_pred hhHHHHHHHHH---HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC----CCCCeEEEEEeCCCC
Q 017161 246 GARMVRELFQM---ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD----ARGNIKVLMATNRPD 318 (376)
Q Consensus 246 ~~~~~~~lf~~---a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~----~~~~v~VI~tTn~~~ 318 (376)
+.......|+. .....|-||+|||||.+.. .+.....++.+|..+..-. ...++.+|++.....
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~---------~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~ 179 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFE---------YPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTED 179 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhcc---------CcchHHHHHHHHHHHHHhcccCcccceEEEEEecCccc
Confidence 11111222332 1225688999999999964 2233334444444332111 112344444333222
Q ss_pred CCCccc-cCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 017161 319 TLDPAL-LRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 373 (376)
Q Consensus 319 ~ld~al-lr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~ 373 (376)
.+.... .+|=-+...+.++.-+.++...+++.|--.+. .. .++.|-..|.|.
T Consensus 180 ~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~--~~-~~~~l~~~tgGh 232 (331)
T PF14516_consen 180 YIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS--QE-QLEQLMDWTGGH 232 (331)
T ss_pred ccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC--HH-HHHHHHHHHCCC
Confidence 222111 23323445777888899999998888754432 22 267777777764
No 298
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.98 E-value=3.9e-05 Score=75.73 Aligned_cols=112 Identities=18% Similarity=0.307 Sum_probs=64.6
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCC-----c-eEEEech---h---hhHh---------hhchhhHHHH---HHHHHHH
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDA-----C-FIRVIGS---E---LVQK---------YVGEGARMVR---ELFQMAR 258 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~-----~-~i~v~~~---e---l~~~---------~~g~~~~~~~---~lf~~a~ 258 (376)
.-.+|.||||+|||+|++.+++.... . ++.+... + +... +-......++ .++..|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 45899999999999999999986632 2 2222221 1 1111 1111222222 2333332
Q ss_pred ----cCCCeEEEEcCCcccccCCC--------CCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 017161 259 ----SKKACIVFFDEVDAIGGARF--------DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (376)
Q Consensus 259 ----~~~psIl~iDEiD~l~~~r~--------~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT 314 (376)
.+...+||||||+.++.... ..+.+.++.+...+-.|+..-......+.+.+|+|.
T Consensus 250 ~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 35667999999998854321 112344566666666777665555456677777764
No 299
>PRK09354 recA recombinase A; Provisional
Probab=97.98 E-value=2.5e-05 Score=76.30 Aligned_cols=118 Identities=20% Similarity=0.279 Sum_probs=68.0
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh---cCCceEEEechhhhHh-h---------------hchhhHHHHHHHHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK-Y---------------VGEGARMVRELFQMAR 258 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~---l~~~~i~v~~~el~~~-~---------------~g~~~~~~~~lf~~a~ 258 (376)
|++...-++|+||+|||||+|+-.++.. .+...+.++..+-... + ....+..+..+-..++
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 6788888999999999999999987754 3666677765442211 0 1112223333334456
Q ss_pred cCCCeEEEEcCCcccccC-CCCCCCCC-CH-HHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 259 SKKACIVFFDEVDAIGGA-RFDDGVGG-DN-EVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~-r~~~~~~~-~~-~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
...+.+|+||-+-++.+. ..+...+. +. ...+.+.+.|..+.+.-...++.+|+|..
T Consensus 136 s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQ 195 (349)
T PRK09354 136 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQ 195 (349)
T ss_pred cCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEe
Confidence 678899999999998752 11111110 11 12233334444443333456777777643
No 300
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.98 E-value=4.1e-05 Score=81.60 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCc
Q 017161 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRL 330 (376)
Q Consensus 251 ~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRf 330 (376)
|-.+..|--.+|.|+++||.-+ .-|++..+.+.+-|.++. .+..+|..|+|+..+. ++
T Consensus 617 rlalARaLl~~P~ILlLDEaTS----------aLD~~sE~~I~~~L~~~~-----~~~T~I~IaHRl~ti~-------~a 674 (709)
T COG2274 617 RLALARALLSKPKILLLDEATS----------ALDPETEAIILQNLLQIL-----QGRTVIIIAHRLSTIR-------SA 674 (709)
T ss_pred HHHHHHHhccCCCEEEEeCccc----------ccCHhHHHHHHHHHHHHh-----cCCeEEEEEccchHhh-------hc
Confidence 3345555568899999999644 347788888888887764 3456788888766443 66
Q ss_pred ceEEEec
Q 017161 331 DRKVEFG 337 (376)
Q Consensus 331 d~~i~~~ 337 (376)
|+++.+.
T Consensus 675 drIiVl~ 681 (709)
T COG2274 675 DRIIVLD 681 (709)
T ss_pred cEEEEcc
Confidence 6666654
No 301
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.97 E-value=1.6e-05 Score=82.17 Aligned_cols=107 Identities=25% Similarity=0.357 Sum_probs=69.8
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc-------CCc----eEEEe------------------------chhh---
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT-------DAC----FIRVI------------------------GSEL--- 238 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l-------~~~----~i~v~------------------------~~el--- 238 (376)
+.++++..+++.||+|||||+|.|++|+-. ..| .+.+. -.++
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~v 493 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAV 493 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHH
Confidence 456788899999999999999999999853 111 11111 0001
Q ss_pred ---------hHhh--------hchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcC
Q 017161 239 ---------VQKY--------VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (376)
Q Consensus 239 ---------~~~~--------~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~ 301 (376)
.... +=....+-|-.|..+.-++|.++||||.-+. -+++.+..|.+++..
T Consensus 494 L~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA----------LDe~~e~~l~q~l~~--- 560 (604)
T COG4178 494 LHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA----------LDEETEDRLYQLLKE--- 560 (604)
T ss_pred HHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc----------cChHHHHHHHHHHHh---
Confidence 0000 0001122344566677799999999996543 478888999988875
Q ss_pred CCCCCCeEEEEEeCCCC
Q 017161 302 FDARGNIKVLMATNRPD 318 (376)
Q Consensus 302 ~~~~~~v~VI~tTn~~~ 318 (376)
...++.||..++++.
T Consensus 561 --~lp~~tvISV~Hr~t 575 (604)
T COG4178 561 --ELPDATVISVGHRPT 575 (604)
T ss_pred --hCCCCEEEEeccchh
Confidence 235677888888764
No 302
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.96 E-value=9.5e-05 Score=68.72 Aligned_cols=39 Identities=31% Similarity=0.323 Sum_probs=30.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh---cCCceEEEech
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGS 236 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~---l~~~~i~v~~~ 236 (376)
|++++..+|++||||||||+++..++.+ .+.+.+.+...
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 7888999999999999999999876653 25556555543
No 303
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.95 E-value=3.8e-05 Score=67.74 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=66.1
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEechhhh--------------H---hhhc---------hhhHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELV--------------Q---KYVG---------EGARM 249 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~el~--------------~---~~~g---------~~~~~ 249 (376)
.+.+...+.|.||+|+|||||++.++..... --+.+++..+. + -+.+ .+...
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 4566678999999999999999999985411 01111111000 0 0000 11112
Q ss_pred HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 250 VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 250 ~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
-+-.+..|....|.++++||- ..+-+......+.+++.++. .. +..+|++|+.++
T Consensus 102 qrv~laral~~~p~illlDEP----------t~~LD~~~~~~l~~~l~~~~---~~-g~tiii~th~~~ 156 (173)
T cd03230 102 QRLALAQALLHDPELLILDEP----------TSGLDPESRREFWELLRELK---KE-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCC----------ccCCCHHHHHHHHHHHHHHH---HC-CCEEEEECCCHH
Confidence 233455566688999999994 34458888888988888763 12 345777887654
No 304
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.95 E-value=0.00011 Score=68.77 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=66.6
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCc------eEEEech------hhhHhh--------hchhh-H---HHHHHHH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDAC------FIRVIGS------ELVQKY--------VGEGA-R---MVRELFQ 255 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~------~i~v~~~------el~~~~--------~g~~~-~---~~~~lf~ 255 (376)
-.+..++|.||+|||||+|++.+++..... ++.+... ++.... .+.+. . ....+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 345679999999999999999999977442 3332221 222221 11111 1 1122333
Q ss_pred HH----HcCCCeEEEEcCCcccccC-------CCCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 256 MA----RSKKACIVFFDEVDAIGGA-------RFDD-GVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 256 ~a----~~~~psIl~iDEiD~l~~~-------r~~~-~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
.| ..+...++|+||+..+... .+.. +.|.++.+...+-+++..-..+...+.+.++.|..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~ 165 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATAL 165 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehe
Confidence 33 2356779999999887432 2222 22346666677777776554443466676665543
No 305
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.94 E-value=6.8e-06 Score=67.65 Aligned_cols=30 Identities=37% Similarity=0.631 Sum_probs=26.4
Q ss_pred eeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 205 VLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
++|.|||||||||+|+.+|..++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999987765544
No 306
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.93 E-value=3.9e-05 Score=70.35 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=66.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---C------CceEEEechhhhH-----hh---h----------------c
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---D------ACFIRVIGSELVQ-----KY---V----------------G 244 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~------~~~i~v~~~el~~-----~~---~----------------g 244 (376)
|++...-+.|+||||+|||+++..+|... + ...+.++..+-.. .. . .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 78888889999999999999999998753 2 4556666543110 00 0 0
Q ss_pred hhh---HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 245 EGA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 245 ~~~---~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
... ..++.+........+.+|+||-+..+........ +...+..+.+.+++..+..+....++.||++.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~ 168 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGR-GMLAERARLLSQALRKLLRLADKFNVAVVFTNQV 168 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCC-chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEE
Confidence 011 1122222222256788999999988864321110 0012223445555555554444567777777643
No 307
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.92 E-value=1.3e-05 Score=72.26 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=59.5
Q ss_pred eeeecCCCChHHHHHHHH-HHh---cCCceEEEechhhhHhhhch----h----------------hHHHHHHHHHHHcC
Q 017161 205 VLCYGPPGTGKTLLARAV-ANR---TDACFIRVIGSELVQKYVGE----G----------------ARMVRELFQMARSK 260 (376)
Q Consensus 205 vLL~GppGtGKT~Lakal-A~~---l~~~~i~v~~~el~~~~~g~----~----------------~~~~~~lf~~a~~~ 260 (376)
.+++|.||+|||+.|-.. ... -+..++. +...|.-..+.. . ......... ..
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 78 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRK---LP 78 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTT---SG
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcc---cC
Confidence 578999999999988655 432 2444443 433222111111 0 011111111 11
Q ss_pred CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCC
Q 017161 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 339 (376)
Q Consensus 261 ~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~P 339 (376)
..++|+|||+..+++.|.... ......+ +++.+.. ..++-||++|..+..+|+.+++ +++..+.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~----~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKG----KKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T--------HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCcccc----ccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 467999999999988774311 1122333 4444432 4467799999999999999987 77777766544
No 308
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.92 E-value=7.1e-05 Score=70.08 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 251 ~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+-++..|....|.||++|| +.+.-|-..|-.+++++..+. ...+..||++++.+
T Consensus 146 rv~iArALaQ~~~iLLLDE----------PTs~LDi~~Q~evl~ll~~l~---~~~~~tvv~vlHDl 199 (258)
T COG1120 146 RVLIARALAQETPILLLDE----------PTSHLDIAHQIEVLELLRDLN---REKGLTVVMVLHDL 199 (258)
T ss_pred HHHHHHHHhcCCCEEEeCC----------CccccCHHHHHHHHHHHHHHH---HhcCCEEEEEecCH
Confidence 3455666677888999999 444456777777888887764 34467788888854
No 309
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.91 E-value=5.7e-05 Score=68.30 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=42.3
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCC----ceEEEec-hhhhH---------hhhchhhHHHHHHHHHHHcCCCeEEEEcC
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDA----CFIRVIG-SELVQ---------KYVGEGARMVRELFQMARSKKACIVFFDE 269 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~----~~i~v~~-~el~~---------~~~g~~~~~~~~lf~~a~~~~psIl~iDE 269 (376)
-++|.||+|+||||++++++..+.. ..+.+.. .++.. .-++.....+.+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999987642 2222211 11111 01122222345556666677899999999
Q ss_pred C
Q 017161 270 V 270 (376)
Q Consensus 270 i 270 (376)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 310
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.91 E-value=9.2e-05 Score=66.95 Aligned_cols=105 Identities=12% Similarity=0.210 Sum_probs=55.9
Q ss_pred CCCC-CceeeecCCCChHHHHHHHHHH-----hcCCce---------------EEEechhhhHhhhchhhHHHHHHHHHH
Q 017161 199 IDPP-KGVLCYGPPGTGKTLLARAVAN-----RTDACF---------------IRVIGSELVQKYVGEGARMVRELFQMA 257 (376)
Q Consensus 199 ~~~~-~~vLL~GppGtGKT~LakalA~-----~l~~~~---------------i~v~~~el~~~~~g~~~~~~~~lf~~a 257 (376)
+.++ +.++|.||.|+|||+|.+.++. +.|..+ ..+...+........-..-++++...+
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~ 103 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARIL 103 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHH
Confidence 3444 4599999999999999999982 112111 011111111111111111122222222
Q ss_pred H-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 258 R-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 258 ~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~-~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
. ...|+++++||...- .+......+. .++..+. ..+..+|++|+..
T Consensus 104 ~~~~~p~llllDEp~~g----------lD~~~~~~i~~~~l~~l~----~~~~~vi~~tH~~ 151 (200)
T cd03280 104 QHADPDSLVLLDELGSG----------TDPVEGAALAIAILEELL----ERGALVIATTHYG 151 (200)
T ss_pred HhCCCCcEEEEcCCCCC----------CCHHHHHHHHHHHHHHHH----hcCCEEEEECCHH
Confidence 1 357889999996543 3555555553 4565553 1245678888753
No 311
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.91 E-value=4.1e-05 Score=70.66 Aligned_cols=118 Identities=20% Similarity=0.281 Sum_probs=67.6
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEechhhhH--hh------------------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELVQ--KY------------------------ 242 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~~el~~--~~------------------------ 242 (376)
|++...-+.|+||||||||+++..+|... +...+.++..+-.. .+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 67888889999999999999999998542 24566666543110 00
Q ss_pred -hchhhHHHHHHHHHHHcC-CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 243 -VGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 243 -~g~~~~~~~~lf~~a~~~-~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
..+....+..+-...... .+.+|+||-+.++........ +......+.+.+++..+..+....++.||+|...
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~ 169 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQV 169 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccE
Confidence 000111122233333445 789999999998753211110 0012333455566665554444557777777543
No 312
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.91 E-value=7.2e-05 Score=67.03 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=37.3
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
|.-+.|++++||| +.++-+-...+.+..++.++. +.+..||++|+..+.
T Consensus 147 Alvh~P~i~vlDE----------P~sGLDi~~~r~~~dfi~q~k----~egr~viFSSH~m~E 195 (245)
T COG4555 147 ALVHDPSILVLDE----------PTSGLDIRTRRKFHDFIKQLK----NEGRAVIFSSHIMQE 195 (245)
T ss_pred HHhcCCCeEEEcC----------CCCCccHHHHHHHHHHHHHhh----cCCcEEEEecccHHH
Confidence 4448899999999 455667777888888888865 456778999987543
No 313
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.91 E-value=6.8e-05 Score=72.03 Aligned_cols=53 Identities=23% Similarity=0.405 Sum_probs=40.8
Q ss_pred HHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 255 ~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
..|-.+.|.++|+|| +.++-|+.....+.+++..+. ..++..|+++|+.++.+
T Consensus 148 a~aL~~~P~lliLDE----------Pt~GLDp~~~~~~~~~l~~l~---~~g~~tvlissH~l~e~ 200 (293)
T COG1131 148 ALALLHDPELLILDE----------PTSGLDPESRREIWELLRELA---KEGGVTILLSTHILEEA 200 (293)
T ss_pred HHHHhcCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHH---hCCCcEEEEeCCcHHHH
Confidence 334457799999999 667789999999999998875 23447899999987543
No 314
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.91 E-value=0.00021 Score=69.63 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=94.7
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh-------
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK------- 241 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~------- 241 (376)
.+.+.+.++..+...+-. .+ -.-|..+.|||..|||||.+++.+.+.++.+++.+++-+...-
T Consensus 7 ~v~~Re~qi~~L~~Llg~---~~-------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---NS-------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred CccchHHHHHHHHHHhCC---CC-------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 477888899888877742 11 1346678999999999999999999999999988887664321
Q ss_pred ---h-----hchhh----HHH---HHHHHH---HHcC-CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 017161 242 ---Y-----VGEGA----RMV---RELFQM---ARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF 302 (376)
Q Consensus 242 ---~-----~g~~~----~~~---~~lf~~---a~~~-~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~ 302 (376)
. -|... ..+ -.+|.. +... ..-.|++|.+|.+-. .+.-....+.++-..+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~el~--- 145 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYELL--- 145 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHHHh---
Confidence 1 01100 111 112222 2222 356899999999932 2333344444443333
Q ss_pred CCCCCeEEEEEeCCCCCCCccccCCCCcc-eEEEecCCCHHHHHHHHHHH
Q 017161 303 DARGNIKVLMATNRPDTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIH 351 (376)
Q Consensus 303 ~~~~~v~VI~tTn~~~~ld~allr~gRfd-~~i~~~~Pd~~~r~~Il~~~ 351 (376)
+...+.+|......+. .-+.+.|-++ ..++||.++.++-..|+..-
T Consensus 146 -~~~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 146 -NEPTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred -CCCceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2334444444333221 1122233333 47889999999999988653
No 315
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.90 E-value=9.4e-05 Score=66.99 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 251 ~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
|-.+..|....|.+++|||--+ .-+++.....+..+..+. ..+...|+.|+.
T Consensus 144 RVAIARALaM~P~vmLFDEPTS----------ALDPElv~EVL~vm~~LA----~eGmTMivVTHE 195 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTS----------ALDPELVGEVLDVMKDLA----EEGMTMIIVTHE 195 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCcc----------cCCHHHHHHHHHHHHHHH----HcCCeEEEEech
Confidence 4445556678899999999544 458888888888887764 344556677764
No 316
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.90 E-value=2.8e-05 Score=79.90 Aligned_cols=127 Identities=26% Similarity=0.414 Sum_probs=83.5
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc--CCceEEEechhhhHhhh-----ch--------hhHHHHHHHHHHHcCCCeEEE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT--DACFIRVIGSELVQKYV-----GE--------GARMVRELFQMARSKKACIVF 266 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l--~~~~i~v~~~el~~~~~-----g~--------~~~~~~~lf~~a~~~~psIl~ 266 (376)
.-.+++.|.|||||-.+++++.... ..+|+.++|.-+-...+ |- ..+-.+..++.|..+ .+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccH
Confidence 4579999999999999999998765 67899999876544322 11 111122233334333 999
Q ss_pred EcCCcccccCCCCCCCCCCHHHHHHHHHHHHHh-----cCCCCCCCeEEEEEeCCCCCCCccccCCCCcce-------EE
Q 017161 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQL-----DGFDARGNIKVLMATNRPDTLDPALLRPGRLDR-------KV 334 (376)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l-----d~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~-------~i 334 (376)
+|||..+ .-..|..|++.|.+- .|....-.+.||+||++.= ..+.+.|||-+ ..
T Consensus 413 ldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 9999887 678899999999873 2222233688999999741 23344455532 34
Q ss_pred EecCCCHHHHH
Q 017161 335 EFGLPDLESRT 345 (376)
Q Consensus 335 ~~~~Pd~~~r~ 345 (376)
.+.+|...+|.
T Consensus 479 ~i~lP~lr~R~ 489 (606)
T COG3284 479 VITLPPLRERS 489 (606)
T ss_pred eeccCchhccc
Confidence 55566555554
No 317
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.90 E-value=0.00012 Score=69.28 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=61.0
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC---ceEEEe-chhhhH
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVI-GSELVQ 240 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~---~~i~v~-~~el~~ 240 (376)
.++++++-..++.+.|++++.. +...++|.||+|+||||+++++...+.. .++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 3567787777787777777643 2345899999999999999999877632 233331 112111
Q ss_pred h-----hhc-hhhHHHHHHHHHHHcCCCeEEEEcCCc
Q 017161 241 K-----YVG-EGARMVRELFQMARSKKACIVFFDEVD 271 (376)
Q Consensus 241 ~-----~~g-~~~~~~~~lf~~a~~~~psIl~iDEiD 271 (376)
. .+. +...........+....|++|+++|+.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 0 111 111235666777778899999999984
No 318
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.89 E-value=6.1e-05 Score=65.65 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=26.0
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.++..++|.||+|||||+|.|++|...
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 345677889999999999999999999853
No 319
>PRK07261 topology modulation protein; Provisional
Probab=97.89 E-value=4.4e-05 Score=67.43 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=27.1
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
.++|.|+||+||||||+.++..++.+++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 3789999999999999999999888776554
No 320
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=0.00011 Score=66.00 Aligned_cols=107 Identities=22% Similarity=0.323 Sum_probs=64.6
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcC----CceEEEechhh-----------------hH-----hhh-------c
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSEL-----------------VQ-----KYV-------G 244 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~----~~~i~v~~~el-----------------~~-----~~~-------g 244 (376)
.+.+...+.|.||+|+|||||++.++.... .--+.++...+ .. ... .
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRG 108 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhc
Confidence 456677899999999999999999997320 11111111110 00 000 0
Q ss_pred -hhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 245 -EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 245 -~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
.+...-+-.+..|....|.++++||- .++.+......+.+++..+. ..+..||++|+.++
T Consensus 109 LSgGe~qrv~la~al~~~p~vlllDEP----------~~~LD~~~~~~l~~~l~~~~----~~~~tiiivtH~~~ 169 (192)
T cd03232 109 LSVEQRKRLTIGVELAAKPSILFLDEP----------TSGLDSQAAYNIVRFLKKLA----DSGQAILCTIHQPS 169 (192)
T ss_pred CCHHHhHHHHHHHHHhcCCcEEEEeCC----------CcCCCHHHHHHHHHHHHHHH----HcCCEEEEEEcCCh
Confidence 00111222344455678899999994 34458888888888888764 12456788888654
No 321
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.88 E-value=8.7e-05 Score=66.76 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=65.4
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc--CCc--eEEEechhhh------------Hh---hhc--------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT--DAC--FIRVIGSELV------------QK---YVG-------------- 244 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l--~~~--~i~v~~~el~------------~~---~~g-------------- 244 (376)
.+.+...+.|.||+|+|||+|++.+|... ... -+.+++..+. +. +.+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~ 110 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc
Confidence 45677889999999999999999999875 211 0111111000 00 000
Q ss_pred --hhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 245 --EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 245 --~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
.+...-+-.+..|....|.++++||- .++.+......+.+++.++. .. +..+|++|+.+.
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP----------~~~LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 172 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEP----------TSGLDSSSALQVMSLLRRLA---DT-GRTIICSIHQPS 172 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCC----------CcCCCHHHHHHHHHHHHHHH---hC-CCEEEEEecCch
Confidence 01111222344455578889999994 34458888888888888763 12 456777777653
No 322
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00026 Score=65.40 Aligned_cols=135 Identities=10% Similarity=0.084 Sum_probs=96.1
Q ss_pred CCceeeecCCC-ChHHHHHHHHHHhcCC---------ceEEEechhhhHhh--hchhhHHHHHHHHHHH----cCCCeEE
Q 017161 202 PKGVLCYGPPG-TGKTLLARAVANRTDA---------CFIRVIGSELVQKY--VGEGARMVRELFQMAR----SKKACIV 265 (376)
Q Consensus 202 ~~~vLL~GppG-tGKT~LakalA~~l~~---------~~i~v~~~el~~~~--~g~~~~~~~~lf~~a~----~~~psIl 265 (376)
...+||.|..+ +||..++..++..+.. .++.+.. +-.... ..-+...+|++...+. .+..-|+
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~p-e~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIAR-ETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEec-cccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 45799999998 9999999888876522 2333322 110000 0012334555544443 3455699
Q ss_pred EEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHH
Q 017161 266 FFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRT 345 (376)
Q Consensus 266 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~ 345 (376)
+|+++|.+ ..+..+.|+..|++ +..++.+|..|+.+..+.|.+++ |+ ..+.|+.|+...-.
T Consensus 94 II~~ae~m-----------t~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~ 154 (263)
T PRK06581 94 IIYSAELM-----------NLNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYN 154 (263)
T ss_pred EEechHHh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHH
Confidence 99999999 77788888888775 57788899999999999999999 88 78999999998888
Q ss_pred HHHHHHhccCC
Q 017161 346 QIFKIHTRTMN 356 (376)
Q Consensus 346 ~Il~~~~~~~~ 356 (376)
++....+..+.
T Consensus 155 e~~~~~~~p~~ 165 (263)
T PRK06581 155 ELYSQFIQPIA 165 (263)
T ss_pred HHHHHhccccc
Confidence 87777766554
No 323
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.88 E-value=8.1e-05 Score=66.19 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=65.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEec--------------------hh-----hhHh-hhch----
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIG--------------------SE-----LVQK-YVGE---- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~--------------------~e-----l~~~-~~g~---- 245 (376)
.+.+...+.|.||+|+|||||++.++..... --+.+++ .+ +... .+.+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 4566778999999999999999999986411 0011111 00 0000 0000
Q ss_pred -----hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 246 -----GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 246 -----~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+...-+-.+..|....|.++++|| +..+-+......+.+++..+. ..+..+|++|+..+
T Consensus 102 ~~~LS~G~~qrl~la~al~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~ 165 (182)
T cd03215 102 SSLLSGGNQQKVVLARWLARDPRVLILDE----------PTRGVDVGAKAEIYRLIRELA----DAGKAVLLISSELD 165 (182)
T ss_pred HhhcCHHHHHHHHHHHHHccCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 011112234445557889999999 344568888888988888763 12456788888654
No 324
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.86 E-value=0.00014 Score=66.03 Aligned_cols=61 Identities=20% Similarity=0.134 Sum_probs=42.2
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEec
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG 337 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~ 337 (376)
....|.++++|| +.++.+......+.+++.++. ..+..||++|+..+.++. ++.+.+.
T Consensus 142 l~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~~--------~~~~~~~ 199 (207)
T PRK13539 142 LVSNRPIWILDE----------PTAALDAAAVALFAELIRAHL----AQGGIVIAATHIPLGLPG--------ARELDLG 199 (207)
T ss_pred HhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCchhhcc--------CcEEeec
Confidence 345688999999 444568888888888887753 124568889998776653 3555665
Q ss_pred CCC
Q 017161 338 LPD 340 (376)
Q Consensus 338 ~Pd 340 (376)
.|.
T Consensus 200 ~~~ 202 (207)
T PRK13539 200 PFA 202 (207)
T ss_pred Ccc
Confidence 554
No 325
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.86 E-value=7.3e-05 Score=73.40 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=46.0
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCC----ceEEEe-chhhhH---------hhhchhhHHHHHHHHHHHcCCCeEEE
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDA----CFIRVI-GSELVQ---------KYVGEGARMVRELFQMARSKKACIVF 266 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~----~~i~v~-~~el~~---------~~~g~~~~~~~~lf~~a~~~~psIl~ 266 (376)
+...+++.||+|+||||+++++++.+.. .++.+. ..++.. .-+|.....+...+..+....|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 3466899999999999999999987642 222221 112211 11222222345666777788999999
Q ss_pred EcCCc
Q 017161 267 FDEVD 271 (376)
Q Consensus 267 iDEiD 271 (376)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99983
No 326
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.85 E-value=0.00014 Score=68.57 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=29.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
|+++...++++||||||||+++..+|... +.+.+.++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 67888889999999999999999887642 445555543
No 327
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.85 E-value=6.7e-05 Score=68.96 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=65.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEechhhhHh--------------hh----------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQK--------------YV---------------- 243 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~~el~~~--------------~~---------------- 243 (376)
|++.+..+|+.||||||||+++..++... +.+.+.++..+-... +.
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 78888899999999999999999876532 677777765432111 00
Q ss_pred ---chhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 244 ---GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 244 ---g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
......+..+.+.+....+++++||-+..+.. .. ........+..+...+. ..++.+|+++.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~~-----~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL-YD-----DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-SS-----SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-cC-----CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 01223344445555566778999999999822 11 12334444555555553 34555666665
No 328
>PRK04296 thymidine kinase; Provisional
Probab=97.85 E-value=0.00013 Score=65.55 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=40.3
Q ss_pred ceeeecCCCChHHHHHHHHHHhc---CCceEEEech----hhh---Hhhhchh-----hHHHHHHHHHH--HcCCCeEEE
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS----ELV---QKYVGEG-----ARMVRELFQMA--RSKKACIVF 266 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~----el~---~~~~g~~-----~~~~~~lf~~a--~~~~psIl~ 266 (376)
-.+++||+|+|||+++..++..+ +...+.+... ... ....|.. .....+++..+ ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888765 4444444321 100 0111110 01123333333 335667999
Q ss_pred EcCCccc
Q 017161 267 FDEVDAI 273 (376)
Q Consensus 267 iDEiD~l 273 (376)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999765
No 329
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.85 E-value=1.8e-05 Score=73.39 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=36.0
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
....|.+|++|| +.++-++...+.+++++..+. ..++..+|.+|++.+.
T Consensus 153 La~~P~iliLDE----------Pta~LD~~~~~~l~~~l~~L~---~~~~~tii~~tHd~~~ 201 (235)
T COG1122 153 LAMGPEILLLDE----------PTAGLDPKGRRELLELLKKLK---EEGGKTIIIVTHDLEL 201 (235)
T ss_pred HHcCCCEEEEcC----------CCCCCCHHHHHHHHHHHHHHH---hcCCCeEEEEeCcHHH
Confidence 345688999999 555668889999999988874 2334567778876543
No 330
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.84 E-value=0.00015 Score=64.35 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=40.7
Q ss_pred HHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 253 lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
....|--+.|.+|+-|| ++..-+++....++++++++. .-++.|++||+..+.++
T Consensus 147 aIARAiV~~P~vLlADE----------PTGNLDp~~s~~im~lfeein----r~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 147 AIARAIVNQPAVLLADE----------PTGNLDPDLSWEIMRLFEEIN----RLGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHccCCCeEeecC----------CCCCCChHHHHHHHHHHHHHh----hcCcEEEEEeccHHHHH
Confidence 34445568899999999 455568899999999998875 44667888888654443
No 331
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.84 E-value=1.6e-05 Score=69.50 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=30.0
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCceEEE
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v 233 (376)
.++..++|+|+||||||++|+.+|..++.+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4567899999999999999999999999888743
No 332
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.84 E-value=6e-05 Score=63.73 Aligned_cols=36 Identities=31% Similarity=0.639 Sum_probs=29.5
Q ss_pred eeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhh
Q 017161 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~ 242 (376)
+++.|||||||||+|+.++..++ ...++...+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 68999999999999999999988 5556666665544
No 333
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.83 E-value=0.00014 Score=66.48 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=57.8
Q ss_pred CceeeecCCCChHHHHHHHHHH-----hcCCceE--------------EEechhhhHhhhchhhHHHHHH-HHHHHcCCC
Q 017161 203 KGVLCYGPPGTGKTLLARAVAN-----RTDACFI--------------RVIGSELVQKYVGEGARMVREL-FQMARSKKA 262 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~-----~l~~~~i--------------~v~~~el~~~~~g~~~~~~~~l-f~~a~~~~p 262 (376)
+.++|+||.|+|||++.+.++. ..|.... .+...+-...........++.+ +..+....|
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6799999999999999999983 2232221 1111111111111111112222 122234678
Q ss_pred eEEEEcCCcccccCCCCCCCCCCH-HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCcc
Q 017161 263 CIVFFDEVDAIGGARFDDGVGGDN-EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPA 323 (376)
Q Consensus 263 sIl~iDEiD~l~~~r~~~~~~~~~-~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~a 323 (376)
++++|||+..- .+. +....+..++..+.. .......+|++|+..+.+...
T Consensus 110 slvllDE~~~g----------td~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 110 SLVLIDEFGKG----------TDTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred cEEEeccccCC----------CCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhh
Confidence 99999997543 233 334444455555421 001245688899876554443
No 334
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.83 E-value=0.00023 Score=62.97 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=27.9
Q ss_pred eeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
++|.|||||||||+|+.+|..++.. .++..+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHH
Confidence 6899999999999999999999854 455555554
No 335
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.83 E-value=0.00036 Score=64.82 Aligned_cols=133 Identities=17% Similarity=0.260 Sum_probs=78.2
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCce--EEEechhhhHhh--------hc------hhhHH----HHHHHHHHH-
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACF--IRVIGSELVQKY--------VG------EGARM----VRELFQMAR- 258 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~--i~v~~~el~~~~--------~g------~~~~~----~~~lf~~a~- 258 (376)
+.+-.+++.|++|||||++++.+...+...| +.+-++.....+ +. +.+.. ...+-+.+.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 4455799999999999999999987664322 222222211111 10 00101 111111111
Q ss_pred --c---CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceE
Q 017161 259 --S---KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRK 333 (376)
Q Consensus 259 --~---~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~ 333 (376)
. ..+.+|+|||+.. ...-...+.+++... ..-++.+|.++.....+++.++. -++..
T Consensus 91 ~~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~g----RH~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNNG----RHYNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred hcccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhcc----cccceEEEEEeeecccCCHHHhh--cceEE
Confidence 1 2368999999632 111234566666543 34578899999999999999877 67777
Q ss_pred EEecCCCHHHHHHHHHHH
Q 017161 334 VEFGLPDLESRTQIFKIH 351 (376)
Q Consensus 334 i~~~~Pd~~~r~~Il~~~ 351 (376)
+-+. -+......|++.+
T Consensus 153 i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEec-CcHHHHHHHHHhc
Confidence 7675 4666665555544
No 336
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.82 E-value=0.00049 Score=75.69 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=85.9
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEech--h-----hhHhh---h-----ch---------------hhHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS--E-----LVQKY---V-----GE---------------GARMVR 251 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~--e-----l~~~~---~-----g~---------------~~~~~~ 251 (376)
.+-++|+||+|.|||+++...+...+ ++.-++.. + +.... + +. ....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 45699999999999999999987665 44444332 1 11100 0 00 011222
Q ss_pred HHHHHHHc-CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCc-cccCCCC
Q 017161 252 ELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP-ALLRPGR 329 (376)
Q Consensus 252 ~lf~~a~~-~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~-allr~gR 329 (376)
.++..... ..|.+|+|||++.+- ++.....+..++..+ ..++.+|+++.....+.- .+...
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc--
Confidence 33333332 678999999999881 344555666666543 355556666654222221 11111
Q ss_pred cceEEEec----CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 017161 330 LDRKVEFG----LPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 373 (376)
Q Consensus 330 fd~~i~~~----~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~ 373 (376)
+..+++. ..+.++-.+++...+.. .+ ...+...|.+.|.|.
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gw 218 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGW 218 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCCh
Confidence 2244455 56888888888655432 22 233567788888875
No 337
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.82 E-value=9.7e-05 Score=61.52 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=40.2
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.|.|+.-+.+.+..++...+.++ .-+.|-.+-|+|+||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 48999999999999998755443 11233345589999999999999999974
No 338
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.82 E-value=0.00011 Score=66.51 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=34.6
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
-...|.++++|| +.++-+......+.+++..+. ..+..||++|+.++.
T Consensus 141 l~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~~sH~~~~ 188 (205)
T cd03226 141 LLSGKDLLIFDE----------PTSGLDYKNMERVGELIRELA----AQGKAVIVITHDYEF 188 (205)
T ss_pred HHhCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHH
Confidence 345688999999 444568888899999888763 124568888886543
No 339
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=0.00011 Score=65.17 Aligned_cols=109 Identities=24% Similarity=0.362 Sum_probs=67.0
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCCc--eEEEechhh---------hHh-----------hhc-----------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIGSEL---------VQK-----------YVG----------- 244 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~~--~i~v~~~el---------~~~-----------~~g----------- 244 (376)
-+.+...+.|.||+|+|||||+++++...... -+.+++..+ ... +.+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 45666778899999999999999999754211 111111100 000 000
Q ss_pred hhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 245 EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 245 ~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
.+...-+-.+..|....|.++++|| +..+.+...+..+.+++.++. ...+..+|++|+.++.
T Consensus 102 S~G~~qr~~la~al~~~p~llilDE----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~ 163 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDE----------PTSALDPITRREVRALLKSLQ---AQLGITVVLVTHDLDE 163 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 0112223345556667888999999 444568888899999888764 1224567778876543
No 340
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.81 E-value=0.00011 Score=66.60 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHH
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVAN 224 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~ 224 (376)
+.++..++|.||.|+|||++++.++.
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHH
Confidence 34445799999999999999999993
No 341
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.81 E-value=3.8e-05 Score=72.65 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=61.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc---eEEEe-chh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---FIRVI-GSE 237 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~---~i~v~-~~e 237 (376)
....++++++-.....+.+.+++.. .++..+++++.||+||||||++++++..+... ++.+. ..|
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~-----------~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRS-----------AVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHH-----------CHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred cccccHhhccCchhhHHHHHHHHhh-----------ccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 3445777777666666666666654 12345789999999999999999999977433 33332 222
Q ss_pred hhHhh------h-chhhHHHHHHHHHHHcCCCeEEEEcCCc
Q 017161 238 LVQKY------V-GEGARMVRELFQMARSKKACIVFFDEVD 271 (376)
Q Consensus 238 l~~~~------~-g~~~~~~~~lf~~a~~~~psIl~iDEiD 271 (376)
+.-.. . ........+++..+....|++|++.|+-
T Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 167 LRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 21110 0 1123345677888888999999999985
No 342
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.81 E-value=0.00011 Score=66.43 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEechhh-------------------------------hHhh
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSEL-------------------------------VQKY 242 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~~el-------------------------------~~~~ 242 (376)
.+.++..+.|.||+|+|||||++.++... ..--+.+++..+ ...+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 45677889999999999999999999862 111122221110 0000
Q ss_pred hch--hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 243 VGE--GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 243 ~g~--~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
... +....+-.+..+....|.++++|| +..+-+......+.+++..+. ..+..||++|+.++
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDE----------Pt~~LD~~~~~~l~~~L~~~~----~~~~tiii~sh~~~ 165 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDE----------PDSGLDIDALRLVAEVINKLR----EEGKSVLIITHYQR 165 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHH----HCCCEEEEEecCHH
Confidence 000 111122334455567889999999 344558888888888888763 12456777888765
No 343
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.00014 Score=66.42 Aligned_cols=71 Identities=24% Similarity=0.286 Sum_probs=45.6
Q ss_pred CceeeecCCCChHHHHHHHHHHhcC--------CceEEEec-hhhhHhhhc-------------hhhHHHHHHHHHHHcC
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTD--------ACFIRVIG-SELVQKYVG-------------EGARMVRELFQMARSK 260 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~--------~~~i~v~~-~el~~~~~g-------------~~~~~~~~lf~~a~~~ 260 (376)
.+.|+.|||||||||+.|-+|+-+. ..+..++. +++..-..| +..-+-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 3589999999999999999998652 22333332 233221111 1112223456667889
Q ss_pred CCeEEEEcCCccc
Q 017161 261 KACIVFFDEVDAI 273 (376)
Q Consensus 261 ~psIl~iDEiD~l 273 (376)
.|.|+++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999998643
No 344
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.80 E-value=9.7e-05 Score=67.95 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 253 lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
.+..|....|.+|++||.-+. -|..+|..++.+|..+. ...+..+|+.|+..
T Consensus 151 aIARAL~~~PklLIlDEptSa----------LD~siQa~IlnlL~~l~---~~~~lt~l~IsHdl 202 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSA----------LDVSVQAQILNLLLELK---KERGLTYLFISHDL 202 (252)
T ss_pred HHHHHhccCCCEEEecCchhh----------hcHHHHHHHHHHHHHHH---HhcCceEEEEeCcH
Confidence 445566678999999995443 47888999988888775 23456677888754
No 345
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.80 E-value=0.00024 Score=63.84 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=25.7
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+-+.++..+.|.||+|+|||||+++++...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 21 ITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345677789999999999999999999863
No 346
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.80 E-value=0.00015 Score=66.20 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=35.5
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
....|.++++|| +.++-+......+.+++.++. ...+..||++|+..+.
T Consensus 155 l~~~p~lllLDE----------P~~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~ 203 (218)
T cd03255 155 LANDPKIILADE----------PTGNLDSETGKEVMELLRELN---KEAGTTIVVVTHDPEL 203 (218)
T ss_pred HccCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHH---HhcCCeEEEEECCHHH
Confidence 345688999999 444568888889999888763 1135678888887654
No 347
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00013 Score=67.29 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCcccc
Q 017161 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALL 325 (376)
Q Consensus 251 ~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~all 325 (376)
+-+|..|.-..|-+++||| +.++.+......+.+.+.++-. ..+...+|+.|+..+.+.|.+-
T Consensus 179 rvLiaRALv~~P~LLiLDE----------P~~GLDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 179 RVLIARALVKDPELLILDE----------PAQGLDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFT 241 (257)
T ss_pred HHHHHHHHhcCCCEEEecC----------ccccCChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccc
Confidence 3456667778899999999 3444566666667766666542 2345667888898888877544
No 348
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.79 E-value=0.00013 Score=68.82 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=29.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~ 235 (376)
|+.+...++|.|+||+|||+++..+|... +...+.++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 67778889999999999999999887753 555555554
No 349
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.77 E-value=0.0001 Score=68.93 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=66.3
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcCCce--EEEechhh-------------------------hHhhhch--hh
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACF--IRVIGSEL-------------------------VQKYVGE--GA 247 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~--i~v~~~el-------------------------~~~~~g~--~~ 247 (376)
+.+.....+-|.|.+||||||++|.+.+...... +.+.+.++ ..+|..+ +.
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 3456778899999999999999999998653221 22222211 0111111 11
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 248 RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 248 ~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
+.-|-.+..|....|.+|+.||.-+.+ +..+|..++.||..++. .-++..++.|+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~---~~~lt~lFIsHD 169 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQE---ELGLTYLFISHD 169 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHH---HhCCeEEEEEEE
Confidence 222334555667889999999976653 66777878888776642 234445555554
No 350
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.77 E-value=4.4e-05 Score=80.23 Aligned_cols=133 Identities=27% Similarity=0.284 Sum_probs=80.3
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEE-EechhhhHhhhchhhHHHHHHH-----HHH---HcCCCeEEEEcCCccc
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIR-VIGSELVQKYVGEGARMVRELF-----QMA---RSKKACIVFFDEVDAI 273 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~-v~~~el~~~~~g~~~~~~~~lf-----~~a---~~~~psIl~iDEiD~l 273 (376)
-++||.|.||||||.|.+.+++.+....+. -.++.- .|-+...+++-+ -.| ....+.|.+|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 479999999999999999999876333221 111111 111111111111 000 0123459999999998
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhc------CC--CCCCCeEEEEEeCCCC-------------CCCccccCCCCcce
Q 017161 274 GGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVLMATNRPD-------------TLDPALLRPGRLDR 332 (376)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~VI~tTn~~~-------------~ld~allr~gRfd~ 332 (376)
+...+..+.+.+.+-. |+ .-+.++-|+||+|... .|+++|++ |||.
T Consensus 396 -----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDL 462 (682)
T COG1241 396 -----------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDL 462 (682)
T ss_pred -----------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCe
Confidence 6667777888776621 11 1124577899999753 56789999 9998
Q ss_pred EEEe-cCCCHHHHHHHHHHHh
Q 017161 333 KVEF-GLPDLESRTQIFKIHT 352 (376)
Q Consensus 333 ~i~~-~~Pd~~~r~~Il~~~~ 352 (376)
.+.+ ..|+.+.=..|..+.+
T Consensus 463 ifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 463 IFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred eEEecCCCCccchHHHHHHHH
Confidence 7666 4566554444444333
No 351
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.77 E-value=0.00029 Score=64.72 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=64.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh--------------hch---------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY--------------VGE--------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~--------------~g~--------------- 245 (376)
|+++...+++.|+||+|||+++..++... +.+.+.++..+-.... .+.
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 77888889999999999999999887642 5565556543322110 000
Q ss_pred hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 246 ~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
.......+...+....++.++||-+..+... .+.+......+..++..+. ..++.++++++.
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk----~~~~tvll~s~~ 153 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLR----ETGVTTILTSEA 153 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHH----hCCCEEEEEEcc
Confidence 0011112223334556789999998876221 1123444556667777664 235566666654
No 352
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.76 E-value=0.00019 Score=65.03 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
|....|.++++||- ..+-+......+.+++..+. ..+..||++|+..+.++
T Consensus 143 al~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 143 LWLTRAPLWILDEP----------FTAIDKQGVARLEALLAQHA----EQGGMVILTTHQDLPVA 193 (204)
T ss_pred HHhcCCCEEEEeCC----------CccCCHHHHHHHHHHHHHHH----HCCCEEEEEecChhhhc
Confidence 33467889999994 44558888888888888763 12346888898777665
No 353
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.75 E-value=0.00022 Score=64.31 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=35.8
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
....|.++++|| +.++.+......+.+++..+. ..+..||++|+....++
T Consensus 142 l~~~p~~lilDE----------P~~~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 142 WMSKAKLWLLDE----------PLVALDELSLLTIITKIQEHR----AKGGAVLLTSHQDLPLN 191 (200)
T ss_pred HhcCCCEEEEeC----------CCcccCHHHHHHHHHHHHHHH----HcCCEEEEEeCCchhcc
Confidence 345688999999 344568888888888888753 12456888888776555
No 354
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=0.00021 Score=64.80 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=34.7
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.++++|| +.++.+......+.+++..+. ..+..||++|+.++
T Consensus 142 al~~~p~~lllDE----------P~~~LD~~~~~~~~~~l~~~~----~~~~tii~~sH~~~ 189 (210)
T cd03269 142 AVIHDPELLILDE----------PFSGLDPVNVELLKDVIRELA----RAGKTVILSTHQME 189 (210)
T ss_pred HHhcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHH----HCCCEEEEECCCHH
Confidence 3345688999999 444568888888988888763 12456888888654
No 355
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.73 E-value=0.00018 Score=66.72 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~ 235 (376)
|+.+..-++|.|+||+|||+++..++... +.+.+.++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 78888889999999999999999887643 666666653
No 356
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.73 E-value=0.00032 Score=64.96 Aligned_cols=51 Identities=25% Similarity=0.327 Sum_probs=35.6
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
|....|.++++||- .++.+......+.+++..+. ...+..||++|+..+.+
T Consensus 146 al~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~ 196 (236)
T TIGR03864 146 ALLHRPALLLLDEP----------TVGLDPASRAAIVAHVRALC---RDQGLSVLWATHLVDEI 196 (236)
T ss_pred HHhcCCCEEEEcCC----------ccCCCHHHHHHHHHHHHHHH---HhCCCEEEEEecChhhH
Confidence 33456889999994 44568888888888887753 11245678888876654
No 357
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.73 E-value=0.00021 Score=65.73 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 252 ELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 252 ~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
-.+..|-...|.|||+|| +.++-++-....+.+|+..+. ..-+..+|+.|+..+.
T Consensus 154 vaLARAialdPell~~DE----------PtsGLDPI~a~~~~~LI~~L~---~~lg~T~i~VTHDl~s 208 (263)
T COG1127 154 VALARAIALDPELLFLDE----------PTSGLDPISAGVIDELIRELN---DALGLTVIMVTHDLDS 208 (263)
T ss_pred HHHHHHHhcCCCEEEecC----------CCCCCCcchHHHHHHHHHHHH---HhhCCEEEEEECChHH
Confidence 345556668899999999 566778888888888887764 2235567777876543
No 358
>PRK04328 hypothetical protein; Provisional
Probab=97.73 E-value=0.00039 Score=65.15 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=29.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh---cCCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~---l~~~~i~v~~ 235 (376)
|+++...+|++||||||||+|+..++.. .+.+.+.++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 6888889999999999999998877653 2445555543
No 359
>PRK05973 replicative DNA helicase; Provisional
Probab=97.72 E-value=0.00063 Score=63.19 Aligned_cols=38 Identities=29% Similarity=0.266 Sum_probs=30.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
|+.+...++|.|+||+|||+++-.++... |.+.+.++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 77888889999999999999999887643 555555553
No 360
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.72 E-value=3.6e-05 Score=79.11 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=45.8
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCC-CCCCceeeecCCCChHHHHHHHHHHhcC-CceEEEec
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGI-DPPKGVLCYGPPGTGKTLLARAVANRTD-ACFIRVIG 235 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~LakalA~~l~-~~~i~v~~ 235 (376)
-|+|+.|+++++++|.+++... ..|+ .....++|.||||+|||+||+++|+.+. .+++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~A--------a~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHA--------AQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHH--------HHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4678999999999999888441 1122 2335688999999999999999999762 35555544
No 361
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.72 E-value=0.00024 Score=64.95 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=25.6
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.++..+.|.||+|+|||||+++++...
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677789999999999999999999853
No 362
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.72 E-value=0.00032 Score=64.00 Aligned_cols=51 Identities=18% Similarity=0.046 Sum_probs=35.6
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
+....|.++++||- .++-+......+.+++..+. ..+..||++|+..+.+.
T Consensus 151 al~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 151 LWLSPAPLWLLDEP----------YANLDLEGITLVNRMISAHL----RGGGAALVTTHGAYAAP 201 (214)
T ss_pred HHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH----hCCCEEEEEecChhhhh
Confidence 33457889999994 34458888888888887753 12345788888766544
No 363
>PHA02774 E1; Provisional
Probab=97.72 E-value=0.00022 Score=73.47 Aligned_cols=58 Identities=24% Similarity=0.445 Sum_probs=39.3
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCCceEE-EechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCC
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR-VIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEV 270 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~-v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEi 270 (376)
|++...+++||||||||||++|.++++.++...+. ++... .| .++.+... .|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~F----------wLqpl~d~--ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HF----------WLQPLADA--KIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---cc----------ccchhccC--CEEEEecC
Confidence 44444689999999999999999999998654433 55311 11 12333322 49999997
No 364
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00039 Score=68.42 Aligned_cols=101 Identities=22% Similarity=0.322 Sum_probs=73.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc--CCceEEEechhhhHhhhch--------------hhHHHHHHHHHHHcCC
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT--DACFIRVIGSELVQKYVGE--------------GARMVRELFQMARSKK 261 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l--~~~~i~v~~~el~~~~~g~--------------~~~~~~~lf~~a~~~~ 261 (376)
|+-+..-+||-|.||.|||||+-.+|..+ ..+.++|++.+-.+..... .+..+..+.+.+...+
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 56777789999999999999998888866 3378899988765443211 2334677888888999
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (376)
|++++||-|..+.....++..+.-..+...-.+|+..
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 9999999999998776555555545555555555543
No 365
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.71 E-value=0.00047 Score=63.45 Aligned_cols=38 Identities=34% Similarity=0.352 Sum_probs=29.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
|+++...++|+||||+|||+++..++... +...+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 78888899999999999999999876532 445555553
No 366
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.70 E-value=9e-05 Score=66.24 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=25.6
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.+...+.|.||+|+|||||+++++...
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677789999999999999999999853
No 367
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.70 E-value=0.00031 Score=57.74 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.8
Q ss_pred CceeeecCCCChHHHHHHHHHHhc
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l 226 (376)
++++++||+|+|||+++-.++...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988888765
No 368
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.70 E-value=7.8e-05 Score=83.10 Aligned_cols=134 Identities=19% Similarity=0.293 Sum_probs=91.1
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh--Hhhhch----hhHH---HHHHHHHHHcCCCeEEEEcCCccc
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV--QKYVGE----GARM---VRELFQMARSKKACIVFFDEVDAI 273 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~--~~~~g~----~~~~---~~~lf~~a~~~~psIl~iDEiD~l 273 (376)
..+||.||+.+|||+++..+|..++..|++++-.+.. +.|+|. .... -..++-.|.+.. .-|++||+.-.
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 3599999999999999999999999999999976542 344443 1111 122333343333 38999998765
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhcC---------CCCCCCeEEEEEeCCC------CCCCccccCCCCcceEEEecC
Q 017161 274 GGARFDDGVGGDNEVQRTMLEIVNQLDG---------FDARGNIKVLMATNRP------DTLDPALLRPGRLDRKVEFGL 338 (376)
Q Consensus 274 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~---------~~~~~~v~VI~tTn~~------~~ld~allr~gRfd~~i~~~~ 338 (376)
..++..+|.+||+.-.. ..+..+..++||-|.| ..|..|++. || ..++|.-
T Consensus 968 -----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFdd 1033 (4600)
T COG5271 968 -----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDD 1033 (4600)
T ss_pred -----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhccc
Confidence 56678888888764221 1234567777777876 357789998 98 4566665
Q ss_pred CCHHHHHHHHHHH
Q 017161 339 PDLESRTQIFKIH 351 (376)
Q Consensus 339 Pd~~~r~~Il~~~ 351 (376)
-..++...||+..
T Consensus 1034 ipedEle~ILh~r 1046 (4600)
T COG5271 1034 IPEDELEEILHGR 1046 (4600)
T ss_pred CcHHHHHHHHhcc
Confidence 5666777777543
No 369
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.70 E-value=0.00019 Score=75.40 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=26.1
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+-++++..+.|.||+|+|||||++.+++..
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345677889999999999999999999864
No 370
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.70 E-value=0.0002 Score=69.07 Aligned_cols=48 Identities=19% Similarity=0.399 Sum_probs=35.7
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++.++.....+.+++..+. ..+..||++|+..+
T Consensus 138 al~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~~~----~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 138 SLIHQPDVLFLDE----------PTTGLDPRTRRAIWDYIRALK----EEGVTILLTTHYME 185 (302)
T ss_pred HHhcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHH
Confidence 4446788999999 555678999999999988764 12456788888654
No 371
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.69 E-value=0.00016 Score=69.96 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=36.7
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|..+.|.+|++|| +.++.++..+..+.+++.++. ..+..||++|+..+
T Consensus 152 aL~~~P~lllLDE----------Pt~gLD~~~~~~l~~~l~~l~----~~g~till~sH~l~ 199 (306)
T PRK13537 152 ALVNDPDVLVLDE----------PTTGLDPQARHLMWERLRSLL----ARGKTILLTTHFME 199 (306)
T ss_pred HHhCCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHH
Confidence 4446789999999 566779999999999998873 22556888888654
No 372
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.69 E-value=0.00014 Score=76.34 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=26.5
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788889999999999999999999865
No 373
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.69 E-value=0.00026 Score=61.77 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---------------CCceEEEechh-hhHhhhchhhHHH---HHHHHHHHcCC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---------------DACFIRVIGSE-LVQKYVGEGARMV---RELFQMARSKK 261 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---------------~~~~i~v~~~e-l~~~~~g~~~~~~---~~lf~~a~~~~ 261 (376)
.++..++.||.|+|||+++++++-.+ +...-.+...- +...-...+.+.. ...+..+....
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~ 99 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKP 99 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCC
Confidence 34589999999999999999986432 21111111000 0000011112211 11121111137
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
|++++|||...- .+......+.+.+.++. . . +..+|++|+.++..
T Consensus 100 ~~llllDEp~~g----------ld~~~~~~l~~~l~~~~--~-~-~~~vii~TH~~~~~ 144 (162)
T cd03227 100 RPLYILDEIDRG----------LDPRDGQALAEAILEHL--V-K-GAQVIVITHLPELA 144 (162)
T ss_pred CCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH--h-c-CCEEEEEcCCHHHH
Confidence 889999997653 35555566666555432 1 2 45688899876543
No 374
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.69 E-value=0.00013 Score=70.27 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=47.6
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcC-----CceEEEe-chhhhHh-------hhchhhHHHHHHHHHHHcCCCeEEEE
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTD-----ACFIRVI-GSELVQK-------YVGEGARMVRELFQMARSKKACIVFF 267 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~-----~~~i~v~-~~el~~~-------~~g~~~~~~~~lf~~a~~~~psIl~i 267 (376)
..+++++.||+|+||||++++++..+. ...+.+. ..|+.-. ........+.+++..+....|+.|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 357899999999999999999998762 2222222 1122100 01112225667888888899999999
Q ss_pred cCCc
Q 017161 268 DEVD 271 (376)
Q Consensus 268 DEiD 271 (376)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9974
No 375
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.69 E-value=0.00019 Score=76.78 Aligned_cols=118 Identities=18% Similarity=0.243 Sum_probs=68.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh---cCCceEEEechhhhHh----h------------hchhhHHHHHHHHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELVQK----Y------------VGEGARMVRELFQMAR 258 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~---l~~~~i~v~~~el~~~----~------------~g~~~~~~~~lf~~a~ 258 (376)
|++....++|+||||||||+|+..++.. .+...+.++..+-... . ....+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 6788888999999999999999765543 3556666665442220 0 0111222222333345
Q ss_pred cCCCeEEEEcCCcccccC-CCCCCCCC-CHHHH-HHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 259 SKKACIVFFDEVDAIGGA-RFDDGVGG-DNEVQ-RTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~-r~~~~~~~-~~~~~-~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
...+.+|+||-+.++.+. ..++..+. ....+ +.+.++|..+..+-...++.+|+|-.
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQ 195 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQ 195 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 678999999999999862 22211111 12222 33345555554444456777777643
No 376
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.68 E-value=3.1e-05 Score=68.26 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.2
Q ss_pred ceeeecCCCChHHHHHHHHHHhc
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l 226 (376)
+++|+|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47999999999999999999877
No 377
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.68 E-value=0.0002 Score=63.19 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=61.1
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhh-----------------chhhHHHHHHHHHHHcCCCeEEE
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYV-----------------GEGARMVRELFQMARSKKACIVF 266 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~-----------------g~~~~~~~~lf~~a~~~~psIl~ 266 (376)
.+++.|+||+|||++|..++..++.+.+.+........-. -+....+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 4899999999999999999999887766665443221100 00011233333221 23356899
Q ss_pred EcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
||-+..+..+...... .......+.+++..+.. .+..+|+++|..
T Consensus 82 ID~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~----~~~tvVlVs~Ev 126 (170)
T PRK05800 82 VDCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQ----LPAKIILVTNEV 126 (170)
T ss_pred ehhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHc----CCCCEEEEEcCC
Confidence 9999888654322100 13334455566666542 233456666643
No 378
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.68 E-value=0.00025 Score=64.65 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=34.4
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
-...|.++++|| +.++-+......+.+++.++. ..+..||++|+.++
T Consensus 153 l~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~~~tii~vsH~~~ 199 (216)
T TIGR00960 153 IVHKPPLLLADE----------PTGNLDPELSRDIMRLFEEFN----RRGTTVLVATHDIN 199 (216)
T ss_pred HhcCCCEEEEeC----------CCCcCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 335688999999 445568888888988888763 12456888888754
No 379
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.68 E-value=0.00032 Score=63.73 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=25.3
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45677789999999999999999999864
No 380
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=0.00029 Score=63.80 Aligned_cols=108 Identities=22% Similarity=0.290 Sum_probs=63.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcC-----CceEEEechhhh-------------------------Hhh-----
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACFIRVIGSELV-------------------------QKY----- 242 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~-----~~~i~v~~~el~-------------------------~~~----- 242 (376)
.+.++..+.|.||+|+|||||++.++.... .--+.+++..+. ...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 108 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL 108 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhh
Confidence 456777899999999999999999998643 111112111100 000
Q ss_pred -------hch--hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 017161 243 -------VGE--GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (376)
Q Consensus 243 -------~g~--~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~t 313 (376)
... +...-+-.+..|-...|.++++|| +..+.+...+..+.+++.++.. ..+..+||.+
T Consensus 109 ~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~~--~~~~t~ii~~ 176 (202)
T cd03233 109 RCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDN----------STRGLDSSTALEILKCIRTMAD--VLKTTTFVSL 176 (202)
T ss_pred hhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcC----------CCccCCHHHHHHHHHHHHHHHH--hCCCEEEEEE
Confidence 000 011112234444456788999999 4445688888889888887631 1233455666
Q ss_pred eCCC
Q 017161 314 TNRP 317 (376)
Q Consensus 314 Tn~~ 317 (376)
++..
T Consensus 177 ~h~~ 180 (202)
T cd03233 177 YQAS 180 (202)
T ss_pred cCCH
Confidence 6643
No 381
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.67 E-value=0.00014 Score=65.67 Aligned_cols=34 Identities=32% Similarity=0.413 Sum_probs=24.6
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
.+.++|.||||||||++++.++..+ +..++.+..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3468889999999999999988755 445555543
No 382
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.67 E-value=0.00015 Score=67.98 Aligned_cols=30 Identities=37% Similarity=0.556 Sum_probs=25.9
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.++..+.|.||+|+|||||++.++..+
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677889999999999999999999853
No 383
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=0.00028 Score=65.22 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=34.8
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
....|.++++||- .++-+......+.+++.++. ...+..||++|+..+.
T Consensus 160 l~~~p~lllLDEP----------t~~LD~~~~~~l~~~l~~~~---~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 160 LVNNPRLVLADEP----------TGNLDARNADSIFQLLGELN---RLQGTAFLVVTHDLQL 208 (233)
T ss_pred HhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHH
Confidence 3456889999993 44568888888888888763 1234568888887643
No 384
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.67 E-value=0.0003 Score=63.79 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=34.6
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
|....|.++++|| +.++-+......+.+++.++.. .+..+|++|+.++.
T Consensus 140 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~ 188 (208)
T cd03268 140 ALLGNPDLLILDE----------PTNGLDPDGIKELRELILSLRD----QGITVLISSHLLSE 188 (208)
T ss_pred HHhcCCCEEEECC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHH
Confidence 3345688999999 4445688888888888887641 23567888886553
No 385
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.67 E-value=0.0002 Score=69.36 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=66.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh---------cCCceEEEechhh---------hHhhhc---------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR---------TDACFIRVIGSEL---------VQKYVG--------------- 244 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~---------l~~~~i~v~~~el---------~~~~~g--------------- 244 (376)
|+....-+.|+||||||||+++..+|-. .+...++++..+- ...+--
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 6788888999999999999999887742 2345666665431 111000
Q ss_pred hhh---HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 245 EGA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 245 ~~~---~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
..+ ..+..+........+.+|+||-|-+++.....+ .+.-.+-++.+.+++..+..+....++.||+|..
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNq 244 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQ 244 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECc
Confidence 011 112222223344578899999999886543221 1112222334555555555444456676666543
No 386
>PRK06762 hypothetical protein; Provisional
Probab=97.67 E-value=0.00015 Score=63.23 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=32.1
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
|.-++|+|+|||||||+|+.++..++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 3468899999999999999999998666666776665543
No 387
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.66 E-value=0.00022 Score=64.76 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=34.7
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
....|.++++|| +..+.+......+.+++.++.. .+..||++|+.++.
T Consensus 150 l~~~p~llllDE----------P~~~LD~~~~~~l~~~l~~~~~----~~~tvi~~sh~~~~ 197 (213)
T cd03262 150 LAMNPKVMLFDE----------PTSALDPELVGEVLDVMKDLAE----EGMTMVVVTHEMGF 197 (213)
T ss_pred HhcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHH
Confidence 335688999999 4445688888999999887641 23457888887653
No 388
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=0.00027 Score=64.30 Aligned_cols=48 Identities=15% Similarity=0.269 Sum_probs=34.1
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
....|.++++|| +.++-+......+.+++.++. ...+..||++|+.++
T Consensus 145 l~~~p~~lllDE----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~ 192 (213)
T cd03259 145 LAREPSLLLLDE----------PLSALDAKLREELREELKELQ---RELGITTIYVTHDQE 192 (213)
T ss_pred HhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEecCHH
Confidence 345688999999 444568888888988888763 122456788888654
No 389
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.65 E-value=0.00021 Score=76.88 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=26.2
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+-++++..+.|.||+|+|||||++.+++.+
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345778889999999999999999999864
No 390
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.65 E-value=0.00023 Score=74.94 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=26.3
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+-++++..+.|.|++|+|||||++.+++.+
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 346778889999999999999999999865
No 391
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.65 E-value=0.00046 Score=61.64 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=53.2
Q ss_pred eeeecCCCChHHHHHHHHHH-----hcCCce--------------EEEechhhhHhhhchhhHHHHHHHHHHH-cCCCeE
Q 017161 205 VLCYGPPGTGKTLLARAVAN-----RTDACF--------------IRVIGSELVQKYVGEGARMVRELFQMAR-SKKACI 264 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~-----~l~~~~--------------i~v~~~el~~~~~g~~~~~~~~lf~~a~-~~~psI 264 (376)
++|+||.|+|||+++|.++- +.|.+. ..+...+......+.....++++...+. ...|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 223221 1122222222111122222222222222 247899
Q ss_pred EEEcCCcccccCCCCCCCCCCHHHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 265 VFFDEVDAIGGARFDDGVGGDNEVQRT-MLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 265 l~iDEiD~l~~~r~~~~~~~~~~~~~~-l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+++||...- .++..... +..++..+. ...+..+|++|+..+
T Consensus 82 lllDEp~~g----------~d~~~~~~~~~~~l~~l~---~~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRG----------TSTYDGVAIAAAVLEYLL---EKIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCC----------CCHHHHHHHHHHHHHHHH---hcCCCeEEEEecHHH
Confidence 999997543 24443333 344555442 122456788888753
No 392
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.65 E-value=0.00029 Score=64.88 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.8
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.+...+.|.||+|+|||||+++++...
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677789999999999999999999853
No 393
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.64 E-value=0.00046 Score=62.09 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=25.6
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.+...+.|.||+|+|||||++.++...
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 21 FTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677789999999999999999999853
No 394
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.00031 Score=64.26 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=34.3
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
-...|.++++|| +.++-+......+.+++.++. ...+..||++|+.++
T Consensus 146 l~~~p~lllLDE----------Pt~~LD~~~~~~~~~~l~~~~---~~~~~tiii~sH~~~ 193 (220)
T cd03293 146 LAVDPDVLLLDE----------PFSALDALTREQLQEELLDIW---RETGKTVLLVTHDID 193 (220)
T ss_pred HHcCCCEEEECC----------CCCCCCHHHHHHHHHHHHHHH---HHcCCEEEEEecCHH
Confidence 335688999999 445568888899999887752 122456788888765
No 395
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.64 E-value=0.00011 Score=66.54 Aligned_cols=51 Identities=14% Similarity=-0.009 Sum_probs=35.6
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
|....|.++++||- .++-+......+.+++.++. ..+..+|++|+.+..+.
T Consensus 139 al~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~----~~g~tiii~sH~~~~~~ 189 (201)
T cd03231 139 LLLSGRPLWILDEP----------TTALDKAGVARFAEAMAGHC----ARGGMVVLTTHQDLGLS 189 (201)
T ss_pred HHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCchhhh
Confidence 34467889999994 44568888888888887653 12445788888765444
No 396
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00035 Score=63.24 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.0
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVAN 224 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~ 224 (376)
.++..+-.-|.||+||||||+.|++-+
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHh
Confidence 455666788999999999999999976
No 397
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.64 E-value=0.00019 Score=70.19 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=67.1
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEechh------hhHh--hhch---------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSE------LVQK--YVGE--------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~~e------l~~~--~~g~--------------- 245 (376)
|+....-+.|+||||||||+|+..+|-.. +...++++... +.+. .+|.
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 67778889999999999999999887321 24566666533 1100 0000
Q ss_pred -hh---HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 246 -GA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 246 -~~---~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
.+ ..+..+........+.+|+||-|-+++.....+. +.-.+-++.+.+++..+..+....++.||+|..
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNq 274 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQ 274 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 01 1122222233446688999999998865432221 112233455666666554444455676776643
No 398
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.63 E-value=0.00047 Score=62.87 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=34.0
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
-...|.++++||- .++-+......+.+++..+. ..+..||++|+..+
T Consensus 151 l~~~p~illlDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tii~~tH~~~ 197 (218)
T cd03266 151 LVHDPPVLLLDEP----------TTGLDVMATRALREFIRQLR----ALGKCILFSTHIMQ 197 (218)
T ss_pred HhcCCCEEEEcCC----------CcCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 3457889999994 44568888888988888763 12456888888654
No 399
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.63 E-value=0.00038 Score=63.26 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=34.3
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
....|.++++|| +.++-+...+..+.+++..+. ...+..||++|+.++
T Consensus 145 l~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tvi~~sH~~~ 192 (213)
T cd03301 145 IVREPKVFLMDE----------PLSNLDAKLRVQMRAELKRLQ---QRLGTTTIYVTHDQV 192 (213)
T ss_pred HhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEeCCHH
Confidence 345688999999 444568888888888887763 122456888888654
No 400
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.63 E-value=0.00033 Score=64.56 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=34.5
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
-...|.+|++|| +.++.+......+.+++.++. ..+..||++|+.++
T Consensus 148 l~~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~----~~~~tii~~sH~~~ 194 (232)
T cd03218 148 LATNPKFLLLDE----------PFAGVDPIAVQDIQKIIKILK----DRGIGVLITDHNVR 194 (232)
T ss_pred HhcCCCEEEecC----------CcccCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 345688999999 445568888899999888764 12456888888764
No 401
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.63 E-value=0.00027 Score=62.36 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=62.3
Q ss_pred eeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh----h-------------hchhhHHHHHHHHHHHcCCCeEEEE
Q 017161 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK----Y-------------VGEGARMVRELFQMARSKKACIVFF 267 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~----~-------------~g~~~~~~~~lf~~a~~~~psIl~i 267 (376)
+|+.|++|+|||++|..++...+.+.+++....-... . ..+....+.+.+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887767766654432111 0 111222233333221 24669999
Q ss_pred cCCcccccCCCCCCCCC-CHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 268 DEVDAIGGARFDDGVGG-DNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 268 DEiD~l~~~r~~~~~~~-~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
|-+..+..+-....... .......+.+++..+.. .++.+|+++|..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~viVsnEv 126 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN----KPGTLILVSNEV 126 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc----CCCcEEEEECCc
Confidence 99988876553321110 12334555566666542 344466677753
No 402
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.63 E-value=0.00033 Score=70.80 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=64.7
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEE-ec------
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV-IG------ 235 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v-~~------ 235 (376)
-..++++++........+++++.. |..-+|+.||+|+||||...++.+.++.+...| ..
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 356788999999999999988864 334477889999999999999999886554422 11
Q ss_pred --hhhhHhhhchh-hHHHHHHHHHHHcCCCeEEEEcCCc
Q 017161 236 --SELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVD 271 (376)
Q Consensus 236 --~el~~~~~g~~-~~~~~~lf~~a~~~~psIl~iDEiD 271 (376)
+.+.+--+... .-.....+.....+.|+||++.||-
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 11211111111 1123445566677899999999984
No 403
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.63 E-value=0.00028 Score=72.53 Aligned_cols=163 Identities=17% Similarity=0.129 Sum_probs=92.1
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEe-------------c
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI-------------G 235 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~-------------~ 235 (376)
.|-|.+.++.-|.-.+-.-.. ...-....++..-+|+|.|.||+|||-+++++++-+-...+... -
T Consensus 346 sIyGhe~VK~GilL~LfGGv~-K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvk 424 (764)
T KOG0480|consen 346 SIYGHELVKAGILLSLFGGVH-KSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVK 424 (764)
T ss_pred cccchHHHHhhHHHHHhCCcc-ccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEe
Confidence 456666666554322211000 00002233444557999999999999999999986643332211 1
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc------CC--CCCCC
Q 017161 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGN 307 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~ 307 (376)
.+-...|.-+.... -. ....|-+|||+|++ +..-+..+.+.+++=. |+ .-+.+
T Consensus 425 D~esgdf~iEAGAL-----mL---ADnGICCIDEFDKM-----------d~~dqvAihEAMEQQtISIaKAGv~aTLnAR 485 (764)
T KOG0480|consen 425 DEESGDFTIEAGAL-----ML---ADNGICCIDEFDKM-----------DVKDQVAIHEAMEQQTISIAKAGVVATLNAR 485 (764)
T ss_pred cCCCCceeeecCcE-----EE---ccCceEEechhccc-----------ChHhHHHHHHHHHhheehheecceEEeecch
Confidence 11111111111110 01 12349999999998 4444667777776521 11 11235
Q ss_pred eEEEEEeCCCC-------------CCCccccCCCCcceE-EEecCCCHHHHHHHHHHHhc
Q 017161 308 IKVLMATNRPD-------------TLDPALLRPGRLDRK-VEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 308 v~VI~tTn~~~-------------~ld~allr~gRfd~~-i~~~~Pd~~~r~~Il~~~~~ 353 (376)
..||||+|... .+++++++ |||.. |-++-|++..-..|-++.+.
T Consensus 486 tSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 486 TSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred hhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHH
Confidence 66889998642 56789999 99974 45578887766666655553
No 404
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.62 E-value=0.00025 Score=69.53 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=36.8
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
|....|.+|++|| +.++-|+..+..+.+++.++. ..+..||++|+..+.
T Consensus 186 aL~~~P~lLiLDE----------Pt~gLD~~~r~~l~~~l~~l~----~~g~tilisSH~l~e 234 (340)
T PRK13536 186 ALINDPQLLILDE----------PTTGLDPHARHLIWERLRSLL----ARGKTILLTTHFMEE 234 (340)
T ss_pred HHhcCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHHH
Confidence 3446789999999 556679999999999998874 124568888887643
No 405
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.62 E-value=0.00026 Score=75.81 Aligned_cols=30 Identities=37% Similarity=0.538 Sum_probs=26.4
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+.|.|++|||||||++.+++..
T Consensus 474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346788889999999999999999999864
No 406
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.61 E-value=0.00027 Score=68.14 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=35.2
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++-+......+.+++.++. ..+..||++|+..+
T Consensus 149 al~~~p~lllLDE----------Pt~gLD~~~~~~l~~~l~~~~----~~g~til~~sH~~~ 196 (303)
T TIGR01288 149 ALINDPQLLILDE----------PTTGLDPHARHLIWERLRSLL----ARGKTILLTTHFME 196 (303)
T ss_pred HHhcCCCEEEEeC----------CCcCCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHH
Confidence 3346788999999 455668888999999888763 12456788888754
No 407
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.61 E-value=0.0005 Score=63.04 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=35.4
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
|....|.++++|| +.++.+......+.+++..+. ..+..||++|+.++.
T Consensus 138 al~~~p~llllDE----------P~~~LD~~~~~~l~~~L~~~~----~~~~tiii~sH~~~~ 186 (223)
T TIGR03740 138 ALLNHPKLLILDE----------PTNGLDPIGIQELRELIRSFP----EQGITVILSSHILSE 186 (223)
T ss_pred HHhcCCCEEEECC----------CccCCCHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHH
Confidence 3446788999999 444568888889998888763 124568888887653
No 408
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.61 E-value=0.00069 Score=61.20 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEe
Q 017161 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF 336 (376)
Q Consensus 260 ~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~ 336 (376)
..|.++++||-.. +.+......+.+++..+. . +..||++|+.++.+ + ..|+.+.+
T Consensus 134 ~~~~illlDEP~~----------~LD~~~~~~l~~~l~~~~----~-~~tiIiitH~~~~~-----~--~~d~v~~~ 188 (197)
T cd03278 134 RPSPFCVLDEVDA----------ALDDANVERFARLLKEFS----K-ETQFIVITHRKGTM-----E--AADRLYGV 188 (197)
T ss_pred CCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHhc----c-CCEEEEEECCHHHH-----h--hcceEEEE
Confidence 3557999999543 457888888888888764 1 24578888876533 2 45555544
No 409
>PHA02624 large T antigen; Provisional
Probab=97.61 E-value=0.00017 Score=74.55 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=72.3
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCC
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r 277 (376)
|++..+.++|+||||||||+++.++++.++...+.++++.-... |...-.....+.+||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 56666789999999999999999999999777777875543221 222111122489999985432211
Q ss_pred C--CCCCCCCHHHHHHHHHHHHHhcCC-C------CCCC-----eEEEEEeCCCCCCCccccCCCCcceEEEecC
Q 017161 278 F--DDGVGGDNEVQRTMLEIVNQLDGF-D------ARGN-----IKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (376)
Q Consensus 278 ~--~~~~~~~~~~~~~l~~ll~~ld~~-~------~~~~-----v~VI~tTn~~~~ld~allr~gRfd~~i~~~~ 338 (376)
. .++.+.+ -+..|=+.+||- . .... -..|+|||. ..|+..+.- ||...+.|..
T Consensus 495 ~~Lp~G~~~d-----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQGMN-----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCcccccc-----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 1 1111222 122344556654 0 0111 236778884 456777777 8888888863
No 410
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.61 E-value=0.0004 Score=62.69 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=34.0
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
....|.++++||- .++.+......+.+++.++. ..+..+|++|+.++
T Consensus 149 l~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~----~~~~tii~~sh~~~ 195 (206)
T TIGR03608 149 ILKDPPLILADEP----------TGSLDPKNRDEVLDLLLELN----DEGKTIIIVTHDPE 195 (206)
T ss_pred HHcCCCEEEEeCC----------cCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeCCHH
Confidence 3456889999994 44568888899999988764 12456777888764
No 411
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.61 E-value=0.00027 Score=75.78 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=41.2
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceE
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRK 333 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~ 333 (376)
+..|--..|.|+++||.-+ +-|.+....+.+.+..+. .+..+|..|++++.+ + .+|++
T Consensus 612 lARall~~p~iliLDE~Ts----------~LD~~te~~i~~~l~~~~-----~~~T~iiItHrl~~~-----~--~~D~i 669 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTS----------AMDNRSEERFKDRLKRWL-----AGKTLVLVTHRTSLL-----D--LVDRI 669 (694)
T ss_pred HHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHh-----CCCEEEEEecCHHHH-----H--hCCEE
Confidence 3334457788999999543 457888888888777653 245577788877532 3 56676
Q ss_pred EEec
Q 017161 334 VEFG 337 (376)
Q Consensus 334 i~~~ 337 (376)
+.+.
T Consensus 670 ivl~ 673 (694)
T TIGR03375 670 IVMD 673 (694)
T ss_pred EEEe
Confidence 6663
No 412
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.61 E-value=0.00029 Score=68.40 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=65.1
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEechhh------hHh--hhch---------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSEL------VQK--YVGE--------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~~el------~~~--~~g~--------------- 245 (376)
|++.+.-++|+||||||||+++..+|... +...++++..+- .+. ..|.
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 67888889999999999999999998652 235666665441 000 0000
Q ss_pred -hh---HHHHHHHHHHHc-CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 246 -GA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 246 -~~---~~~~~lf~~a~~-~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
.. ..+..+...... ..+.+|+||-|-++........ +...+-++.+.+++..+..+....++.||+|..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 00 112222222333 5677999999998764321111 111122343445554444333455677777654
No 413
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=0.00048 Score=62.99 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.1
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||+++++..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45667789999999999999999999853
No 414
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.59 E-value=0.00055 Score=70.34 Aligned_cols=112 Identities=25% Similarity=0.250 Sum_probs=68.4
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh----cCCceEEEechhhhHhh--------------h----------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR----TDACFIRVIGSELVQKY--------------V---------------- 243 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~----l~~~~i~v~~~el~~~~--------------~---------------- 243 (376)
|+.+...+||.||||||||++|..++.+ .+.+.+.+...+-...+ .
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~ 96 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEG 96 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhcc
Confidence 7888999999999999999999988543 25666666644321110 0
Q ss_pred ------chhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 244 ------GEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 244 ------g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
-.....+..+........+..++||-+..+.... .......+.+..++..+. ..++.+|++++..
T Consensus 97 ~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~-----~~~~~~r~~l~~Li~~L~----~~g~TvLLtsh~~ 167 (484)
T TIGR02655 97 QDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQY-----DAVSVVRREIFRLVARLK----QIGVTTVMTTERI 167 (484)
T ss_pred ccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhc-----CchHHHHHHHHHHHHHHH----HCCCEEEEEecCc
Confidence 0112233445555666778899999777664211 011234455666666653 2356677777654
Q ss_pred C
Q 017161 318 D 318 (376)
Q Consensus 318 ~ 318 (376)
+
T Consensus 168 ~ 168 (484)
T TIGR02655 168 E 168 (484)
T ss_pred c
Confidence 3
No 415
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.58 E-value=0.00043 Score=68.54 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=45.8
Q ss_pred CceeeecCCCChHHHHHHHHHHhcC-----CceEEEec-hhhh-----------HhhhchhhHHHHHHHHHHHcCCCeEE
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTD-----ACFIRVIG-SELV-----------QKYVGEGARMVRELFQMARSKKACIV 265 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~-----~~~i~v~~-~el~-----------~~~~g~~~~~~~~lf~~a~~~~psIl 265 (376)
..+|++||+|+||||++++++..+. ...+.+.- .++. +..+|.....+......+....|++|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4689999999999999999988762 23333321 1221 11122222235566777778899999
Q ss_pred EEcCCc
Q 017161 266 FFDEVD 271 (376)
Q Consensus 266 ~iDEiD 271 (376)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999974
No 416
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.58 E-value=0.00034 Score=73.62 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.++++..+.|.|++|+|||||++.+++..
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45778889999999999999999999864
No 417
>PRK04040 adenylate kinase; Provisional
Probab=97.58 E-value=0.00062 Score=61.08 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=27.7
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
++.++++|+|||||||+++.++..+...+..++..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 4568999999999999999999998322333444443
No 418
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.58 E-value=0.00065 Score=61.37 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=25.6
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.++++..+.|.||+|+|||||++.++...
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 45677889999999999999999999864
No 419
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.57 E-value=0.00011 Score=66.64 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=33.9
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
...|.++++|| +.++-+......+.+++.++.. . +..||++|+.++
T Consensus 150 ~~~p~llllDE----------Pt~~LD~~~~~~~~~~l~~~~~---~-~~tvi~~sH~~~ 195 (211)
T cd03225 150 AMDPDILLLDE----------PTAGLDPAGRRELLELLKKLKA---E-GKTIIIVTHDLD 195 (211)
T ss_pred hcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHH
Confidence 35678999999 4445688888889888887641 2 456888888654
No 420
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.57 E-value=0.00035 Score=70.33 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=48.0
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceE
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRK 333 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~ 333 (376)
+..|-.+.|.++++||= ++.-|.+-...|..-+..+. ..++++|..|++|..|. ..|++
T Consensus 483 LARAlYG~P~lvVLDEP----------NsNLD~~GE~AL~~Ai~~~k----~rG~~vvviaHRPs~L~-------~~Dki 541 (580)
T COG4618 483 LARALYGDPFLVVLDEP----------NSNLDSEGEAALAAAILAAK----ARGGTVVVIAHRPSALA-------SVDKI 541 (580)
T ss_pred HHHHHcCCCcEEEecCC----------CCCcchhHHHHHHHHHHHHH----HcCCEEEEEecCHHHHh-------hccee
Confidence 34455578999999994 33446666777777776654 44567888889875432 23333
Q ss_pred EEecCC---CHHHHHHHHHHHhcc
Q 017161 334 VEFGLP---DLESRTQIFKIHTRT 354 (376)
Q Consensus 334 i~~~~P---d~~~r~~Il~~~~~~ 354 (376)
..+..= ..-.|.+++...++.
T Consensus 542 lvl~~G~~~~FG~r~eVLa~~~~~ 565 (580)
T COG4618 542 LVLQDGRIAAFGPREEVLAKVLRP 565 (580)
T ss_pred eeecCChHHhcCCHHHHHHHhcCC
Confidence 333211 112366667666653
No 421
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.57 E-value=0.00029 Score=68.15 Aligned_cols=76 Identities=20% Similarity=0.345 Sum_probs=49.3
Q ss_pred hcCCCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEe-chhhhHh---h---------hchhhHHHHHHHHHHHcC
Q 017161 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVI-GSELVQK---Y---------VGEGARMVRELFQMARSK 260 (376)
Q Consensus 196 ~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~-~~el~~~---~---------~g~~~~~~~~lf~~a~~~ 260 (376)
.+-+....++++.||+|+||||++++++..+.. ..+.+. ..++.-. . .+...-.+.+++..+...
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcC
Confidence 344567789999999999999999999987632 122221 1111100 0 011122356677778889
Q ss_pred CCeEEEEcCCc
Q 017161 261 KACIVFFDEVD 271 (376)
Q Consensus 261 ~psIl~iDEiD 271 (376)
.|.+|++||+-
T Consensus 218 ~pd~ii~gE~r 228 (308)
T TIGR02788 218 RPDRIILGELR 228 (308)
T ss_pred CCCeEEEeccC
Confidence 99999999974
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.57 E-value=0.00048 Score=63.48 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=56.9
Q ss_pred CCCCceeeecCCCChHHHHHHHHHH-h----cCCc--------------eEEEechhhhH----hhhchhhHHHHHHHHH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVAN-R----TDAC--------------FIRVIGSELVQ----KYVGEGARMVRELFQM 256 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~-~----l~~~--------------~i~v~~~el~~----~~~g~~~~~~~~lf~~ 256 (376)
.+...++|.||.|+|||++.+.++. . .|.. |.++...+-.. .|..+ -..+..+++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e-~~~~~~il~~ 107 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVE-LSETSHILSN 107 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHH-HHHHHHHHHh
Confidence 4456789999999999999999987 2 1211 11121111111 11111 1223444444
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
+ ..+++++|||+.+-.. ..+.......+++.+.. ..+..+|++|+..+.
T Consensus 108 ~--~~~sLvllDE~~~gT~---------~~d~~~i~~~il~~l~~---~~~~~~i~~TH~~~l 156 (222)
T cd03287 108 C--TSRSLVILDELGRGTS---------THDGIAIAYATLHYLLE---EKKCLVLFVTHYPSL 156 (222)
T ss_pred C--CCCeEEEEccCCCCCC---------hhhHHHHHHHHHHHHHh---ccCCeEEEEcccHHH
Confidence 3 4578999999754211 12222323344444431 235678889997654
No 423
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.57 E-value=0.00048 Score=62.91 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=34.9
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
....|.++++||- .++.+......+.+++..+. . +..||++|+.++.+
T Consensus 148 l~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sH~~~~~ 195 (220)
T cd03263 148 LIGGPSVLLLDEP----------TSGLDPASRRAIWDLILEVR----K-GRSIILTTHSMDEA 195 (220)
T ss_pred HhcCCCEEEECCC----------CCCCCHHHHHHHHHHHHHHh----c-CCEEEEEcCCHHHH
Confidence 3457889999994 44558888888988888764 2 25688888876543
No 424
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.0005 Score=67.84 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=34.5
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++||- .++-|...+..+.+++..+. ...++.+|++|+..+
T Consensus 148 AL~~~P~llLLDEP----------~s~LD~~~r~~l~~~l~~l~---~~~g~tii~vTHd~~ 196 (356)
T PRK11650 148 AIVREPAVFLFDEP----------LSNLDAKLRVQMRLEIQRLH---RRLKTTSLYVTHDQV 196 (356)
T ss_pred HHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 44467899999993 44457888888888877653 123567888888754
No 425
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.56 E-value=0.00042 Score=63.01 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=25.6
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.+...+.|.||+|+|||||+++++...
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677789999999999999999999854
No 426
>PRK13947 shikimate kinase; Provisional
Probab=97.56 E-value=6.4e-05 Score=65.83 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=28.1
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
+++|.|+||||||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999986544
No 427
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.56 E-value=0.00052 Score=68.08 Aligned_cols=116 Identities=17% Similarity=0.278 Sum_probs=65.2
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCCc------eEEEech------hhhHhh--------hchhhHH----HHHHH
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDAC------FIRVIGS------ELVQKY--------VGEGARM----VRELF 254 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~~------~i~v~~~------el~~~~--------~g~~~~~----~~~lf 254 (376)
+..+..++|.||||||||+|++.+++..... ++.+... ++.... .+++... ...+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 3455679999999999999999999975322 2222211 111111 1111111 11222
Q ss_pred HHH----HcCCCeEEEEcCCcccccCCC-------C-CCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 017161 255 QMA----RSKKACIVFFDEVDAIGGARF-------D-DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (376)
Q Consensus 255 ~~a----~~~~psIl~iDEiD~l~~~r~-------~-~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT 314 (376)
+.| ..+...+|||||++.++.... . .+.|-++.+...+-.|+..-......+.+.+|+|.
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s~G~~~~~~~~~~~~~~~a~~~~~~GSiT~~~Tv 316 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 316 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCCCCcChhhhcccHHHHhhcCCCCCCcchhheEEE
Confidence 222 235567999999998743211 1 12344666666667777665544455666666554
No 428
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.56 E-value=0.00036 Score=72.39 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=26.0
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345777889999999999999999999854
No 429
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.56 E-value=0.00027 Score=74.21 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=26.3
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345778889999999999999999999864
No 430
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00024 Score=62.39 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=28.9
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
.+++|.|++|+||||+.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 56999999999999999999999999996543
No 431
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00076 Score=67.13 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.|..++|+||+|+||||++..+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999764
No 432
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.55 E-value=0.00052 Score=63.12 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=25.9
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.++..+.|.||+|+|||||++.++...
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345677889999999999999999999853
No 433
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.55 E-value=0.00098 Score=59.22 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=57.8
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEec-hhh---------------------------h----HhhhchhhHHHH
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIG-SEL---------------------------V----QKYVGEGARMVR 251 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~-~el---------------------------~----~~~~g~~~~~~~ 251 (376)
-.+|+||.|+|||++..|++-.++..-.+... ..+ . ......+++. +
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~-r 102 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKS-L 102 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHH-H
Confidence 57899999999999999997655322111110 000 0 0001111211 2
Q ss_pred HHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 252 ELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 252 ~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
-.+..+. ...|.++++||.+.- .+......+.+++..+. ..+..+|++|+.++
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~----------LD~~~~~~i~~~L~~~~----~~g~tiIiiSH~~~ 159 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAA----------LDPTNRRRVSDMIKEMA----KHTSQFIVITLKKE 159 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCC----------CCHHHHHHHHHHHHHHH----hCCCEEEEEECCHH
Confidence 2222221 256889999997764 36677777777777653 12356888888654
No 434
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.55 E-value=0.00065 Score=69.74 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=61.6
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC---ceEEEec-hhh
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVIG-SEL 238 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~---~~i~v~~-~el 238 (376)
...++++++-..++.+.++.++.. +..-++++||+|+||||+++++.+.+.. .++.+.- .|+
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 445788888888888888887753 2234789999999999999988877642 2333321 111
Q ss_pred h-----Hhhhch-hhHHHHHHHHHHHcCCCeEEEEcCCc
Q 017161 239 V-----QKYVGE-GARMVRELFQMARSKKACIVFFDEVD 271 (376)
Q Consensus 239 ~-----~~~~g~-~~~~~~~lf~~a~~~~psIl~iDEiD 271 (376)
. +..+.. ...........+....|++|++.|+-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 111111 11123455666677899999999974
No 435
>PRK03839 putative kinase; Provisional
Probab=97.54 E-value=6.5e-05 Score=66.58 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.6
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
.++|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3889999999999999999999998886654
No 436
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.54 E-value=0.00042 Score=63.36 Aligned_cols=45 Identities=13% Similarity=0.356 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 260 ~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
..|.++++||- .++-+......+.+++.++.. .+..||++|+.++
T Consensus 149 ~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~ 193 (222)
T cd03224 149 SRPKLLLLDEP----------SEGLAPKIVEEIFEAIRELRD----EGVTILLVEQNAR 193 (222)
T ss_pred cCCCEEEECCC----------cccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 56889999993 445688888999999887631 3456888888654
No 437
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.00084 Score=61.70 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=24.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.+...+.|.||+|+|||||+++++...
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34566679999999999999999999864
No 438
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.54 E-value=0.00042 Score=66.99 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=63.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEechhhh-----Hhh---hchh--------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELV-----QKY---VGEG-------------- 246 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~~el~-----~~~---~g~~-------------- 246 (376)
|+....-++|+||||||||+++-.+|... +...++++..+-+ ... .|-.
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 67777888999999999999999998652 2356667654410 000 0100
Q ss_pred --h---HHHHHHHHHHHcC--CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 247 --A---RMVRELFQMARSK--KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 247 --~---~~~~~lf~~a~~~--~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
. ..+..+....... .+.+|+||-+-.+........ +...+-++.+.+++..+..+....++.|++|..
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~-~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGR-GALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0 0122233333333 367999999888754322111 111122233444444443333455676776654
No 439
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00015 Score=69.17 Aligned_cols=50 Identities=30% Similarity=0.310 Sum_probs=35.5
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
|-...|.+|++||- .++-+...+..+.+++..+. ...+..||++|+..+.
T Consensus 154 al~~~p~lllLDEP----------t~gLD~~~~~~l~~~l~~l~---~~~~~tilivsH~~~~ 203 (279)
T PRK13635 154 VLALQPDIIILDEA----------TSMLDPRGRREVLETVRQLK---EQKGITVLSITHDLDE 203 (279)
T ss_pred HHHcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH---HcCCCEEEEEecCHHH
Confidence 33467889999994 44568888899999888764 1235667778876543
No 440
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.54 E-value=0.0015 Score=63.11 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC---CCC------------Cccc
Q 017161 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP---DTL------------DPAL 324 (376)
Q Consensus 260 ~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~---~~l------------d~al 324 (376)
..+-||||||+|++ +++....+++.+..+- ...++++|.+.+.. ..+ ....
T Consensus 171 ~~~iViiIDdLDR~-----------~~~~i~~~l~~ik~~~---~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 171 KKRIVIIIDDLDRC-----------SPEEIVELLEAIKLLL---DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred CceEEEEEcchhcC-----------CcHHHHHHHHHHHHhc---CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 45679999999999 4444555555565544 33788888888742 111 1122
Q ss_pred cCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 325 LRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 325 lr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
+.. .|+..+.+|.|+..+...++...+..
T Consensus 237 LeK-iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 237 LEK-IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHh-hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 220 46778999999999988888777544
No 441
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00055 Score=64.29 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=34.7
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
....|.+|++|| +.++-+......+.++|..+. ...+..||++|+.++.
T Consensus 143 l~~~p~lllLDE----------Pt~~LD~~~~~~l~~~L~~~~---~~~g~tviivsH~~~~ 191 (255)
T PRK11248 143 LAANPQLLLLDE----------PFGALDAFTREQMQTLLLKLW---QETGKQVLLITHDIEE 191 (255)
T ss_pred HhcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 345688999999 445568888899998888762 1224557888887653
No 442
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.00032 Score=64.74 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=26.0
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.+...+.|.||+|+|||||+++++..+
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677889999999999999999999864
No 443
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.53 E-value=0.00069 Score=67.56 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=48.0
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCccccc
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 275 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~ 275 (376)
....++++.||+|||||+++.+++... | -.++...|+..... + .+. .-..+++|+|||+..+--
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~---~----~lg--~v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST---R----QIG--LVGRWDVVAFDEVATLKF 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH---H----HHh--hhccCCEEEEEcCCCCcC
Confidence 456789999999999999999988762 3 22334444332111 1 111 124457999999987632
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH
Q 017161 276 ARFDDGVGGDNEVQRTMLEIVN 297 (376)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~ 297 (376)
. ...+....|...|.
T Consensus 275 ~-------~~~~~v~imK~yMe 289 (449)
T TIGR02688 275 A-------KPKELIGILKNYME 289 (449)
T ss_pred C-------chHHHHHHHHHHHH
Confidence 2 13445555555444
No 444
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.53 E-value=7.9e-05 Score=63.81 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=29.9
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhh
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~ 242 (376)
+++|+|+||+|||++++.+|..++.+++..+ .+....
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~ 37 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQR 37 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHH
Confidence 4789999999999999999999998876544 444433
No 445
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00013 Score=66.28 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.8
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.+...+.|.||+|+|||||++.++...
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677789999999999999999999853
No 446
>PRK10908 cell division protein FtsE; Provisional
Probab=97.53 E-value=0.00062 Score=62.35 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=25.8
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.++..+.|.||+|+|||||+++++...
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677789999999999999999999854
No 447
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.53 E-value=0.00043 Score=74.32 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=26.1
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+.|.|++|+|||||++.+++..
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345778889999999999999999999864
No 448
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00079 Score=63.67 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=25.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||+++++...
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45677789999999999999999999853
No 449
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.52 E-value=0.00015 Score=67.07 Aligned_cols=48 Identities=23% Similarity=0.185 Sum_probs=34.1
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
....|.+|++||- .++-+......+.+++.++. ...+..||++|+.++
T Consensus 129 l~~~p~lllLDEP----------t~gLD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 129 LSIRPKVLLLDEP----------FGALDALTRGNLQEELMQIW---EEHRVTVLMVTHDVD 176 (230)
T ss_pred HHcCCCEEEEcCC----------CcCCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 3356889999993 44568888888888887653 122456888888764
No 450
>PRK13695 putative NTPase; Provisional
Probab=97.52 E-value=0.0013 Score=57.94 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.3
Q ss_pred ceeeecCCCChHHHHHHHHHHhc
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l 226 (376)
.++|.|++|+|||||++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 451
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.52 E-value=0.00073 Score=61.21 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=25.1
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.+...+.|.||+|+|||||+++++...
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45677789999999999999999999753
No 452
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00013 Score=71.32 Aligned_cols=27 Identities=41% Similarity=0.496 Sum_probs=22.4
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHh
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
+.+..-+-|.||+||||||+.|+||.-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444445779999999999999999984
No 453
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.51 E-value=0.00044 Score=72.42 Aligned_cols=30 Identities=30% Similarity=0.456 Sum_probs=26.5
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+-++++..+.+.||+|+|||||++.+++.+
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356788889999999999999999999864
No 454
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00051 Score=64.68 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=25.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||++.++...
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45667789999999999999999999854
No 455
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.51 E-value=0.00071 Score=61.51 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=56.4
Q ss_pred CCCCceeeecCCCChHHHHHHHHHH-----hcCCce--------------EEEechh----hhHhhhchhhHHHHHHHHH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVAN-----RTDACF--------------IRVIGSE----LVQKYVGEGARMVRELFQM 256 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~-----~l~~~~--------------i~v~~~e----l~~~~~g~~~~~~~~lf~~ 256 (376)
.....++|.||+|+|||++++.++. +++..+ ..+...+ -.+.|.++.. .+..++..
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~-~~~~il~~ 105 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMS-ETAYILDY 105 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHH-HHHHHHHh
Confidence 3446699999999999999999974 233221 1111111 1112222222 23333332
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCH-HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDN-EVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~-~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
...|+++++||+..= .++ +.......++..+.. .+..+|++|+..+..
T Consensus 106 --~~~~~lvllDE~~~g----------t~~~~~~~l~~~il~~l~~----~~~~~i~~TH~~~l~ 154 (204)
T cd03282 106 --ADGDSLVLIDELGRG----------TSSADGFAISLAILECLIK----KESTVFFATHFRDIA 154 (204)
T ss_pred --cCCCcEEEeccccCC----------CCHHHHHHHHHHHHHHHHh----cCCEEEEECChHHHH
Confidence 356889999997542 123 223333344554431 256788899865433
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.51 E-value=0.00078 Score=69.26 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=54.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh------hc----------------------hh
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY------VG----------------------EG 246 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~------~g----------------------~~ 246 (376)
|+.+...+|+.||||+|||+|+-.++... +.+.+++...+-...+ +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 78888899999999999999999998754 5556666654432211 01 01
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcccc
Q 017161 247 ARMVRELFQMARSKKACIVFFDEVDAIG 274 (376)
Q Consensus 247 ~~~~~~lf~~a~~~~psIl~iDEiD~l~ 274 (376)
...+..+.+.+....|.+++||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 3345566667777788999999998774
No 457
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00028 Score=65.41 Aligned_cols=29 Identities=38% Similarity=0.499 Sum_probs=25.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||+++++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45677789999999999999999999853
No 458
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00079 Score=68.96 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 251 ~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
|-....|--.+++++++||- +.+-|.+....+.+.+.++. .+..||++|++...
T Consensus 464 RlaLARAll~~~~l~llDEp----------TA~LD~etE~~i~~~l~~l~-----~~ktvl~itHrl~~ 517 (559)
T COG4988 464 RLALARALLSPASLLLLDEP----------TAHLDAETEQIILQALQELA-----KQKTVLVITHRLED 517 (559)
T ss_pred HHHHHHHhcCCCCEEEecCC----------ccCCCHhHHHHHHHHHHHHH-----hCCeEEEEEcChHH
Confidence 44455555567889999994 34457788888888887763 23568888887653
No 459
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.51 E-value=0.00053 Score=71.72 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=25.6
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
-++++..+.|.|++|+|||||++.+++..
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45677889999999999999999999864
No 460
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.50 E-value=0.00028 Score=66.61 Aligned_cols=88 Identities=28% Similarity=0.540 Sum_probs=58.3
Q ss_pred hcCCCCCCceeeecCCCChHHHHHHHHHH------hcCCceEEEechhhhHh-----hhchhhHHHHHHHHHH-------
Q 017161 196 KLGIDPPKGVLCYGPPGTGKTLLARAVAN------RTDACFIRVIGSELVQK-----YVGEGARMVRELFQMA------- 257 (376)
Q Consensus 196 ~~g~~~~~~vLL~GppGtGKT~LakalA~------~l~~~~i~v~~~el~~~-----~~g~~~~~~~~lf~~a------- 257 (376)
+..+.....+||.||+|.||+.||+.+.. ++..+|+.|+|..+... .+|. +...|.-|
T Consensus 202 rva~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh----vkgaftga~~~r~gl 277 (531)
T COG4650 202 RVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH----VKGAFTGARESREGL 277 (531)
T ss_pred HHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh----hccccccchhhhhhh
Confidence 33455667899999999999999999875 56889999999877432 1111 11112111
Q ss_pred -HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 017161 258 -RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (376)
Q Consensus 258 -~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (376)
+......+|+|||..++. +-|..++..+++
T Consensus 278 lrsadggmlfldeigelga-----------deqamllkaiee 308 (531)
T COG4650 278 LRSADGGMLFLDEIGELGA-----------DEQAMLLKAIEE 308 (531)
T ss_pred hccCCCceEehHhhhhcCc-----------cHHHHHHHHHHh
Confidence 222345999999999843 235566666655
No 461
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.50 E-value=0.00015 Score=67.20 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=25.3
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
-+.+...+.|.||+|+|||||+++++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45677889999999999999999999853
No 462
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.50 E-value=0.00073 Score=70.12 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=26.3
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+-++++..+.|.||+|+|||||++.+++..
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346778889999999999999999999864
No 463
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00053 Score=65.10 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=35.8
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
|....|.||++||- .++.+...+..+.+++.++. ..+..||++|+..+.+
T Consensus 150 al~~~p~lllLDEP----------t~gLD~~~~~~l~~~l~~l~----~~g~til~~tH~~~~~ 199 (274)
T PRK13644 150 ILTMEPECLIFDEV----------TSMLDPDSGIAVLERIKKLH----EKGKTIVYITHNLEEL 199 (274)
T ss_pred HHHcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH----hCCCEEEEEecCHHHH
Confidence 33456889999993 44568888888888888764 2355688888876543
No 464
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.50 E-value=0.00048 Score=62.65 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=34.0
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
...|.++++|| +.++-+......+.+++.++. . .+..||++|+..+.
T Consensus 148 ~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~---~-~~~tvi~~sH~~~~ 194 (213)
T cd03235 148 VQDPDLLLLDE----------PFAGVDPKTQEDIYELLRELR---R-EGMTILVVTHDLGL 194 (213)
T ss_pred HcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHH
Confidence 35688999999 344568888888888888763 1 24568888886543
No 465
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.0011 Score=61.17 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=34.7
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
|-...|.++++||- .++-+......+.+++..+. . +..||++|+..+.+
T Consensus 152 al~~~p~lllLDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 200 (234)
T cd03251 152 ALLKDPPILILDEA----------TSALDTESERLVQAALERLM----K-NRTTFVIAHRLSTI 200 (234)
T ss_pred HHhcCCCEEEEeCc----------cccCCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 33457889999994 44558888888888888763 2 34677888876544
No 466
>PTZ00035 Rad51 protein; Provisional
Probab=97.49 E-value=0.00048 Score=67.42 Aligned_cols=116 Identities=14% Similarity=0.208 Sum_probs=65.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEechhh---------hHhhhch--------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSEL---------VQKYVGE-------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~~el---------~~~~~g~-------------- 245 (376)
|+....-+.|+||||||||+|+..++... +...++++.... .+.+--.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 78888889999999999999999987532 334455554331 1110000
Q ss_pred -hh---HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 017161 246 -GA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (376)
Q Consensus 246 -~~---~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT 314 (376)
.+ ..+..+........+.+|+||-|-+++....... +...+-++.+.+++..+..+....++.|++|.
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvtN 265 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVITN 265 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEec
Confidence 01 1122222223346778999999998765322111 11222344466666655544445567666553
No 467
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00083 Score=63.63 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=25.3
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||+++++...
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45677789999999999999999999864
No 468
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.49 E-value=0.00097 Score=62.38 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=34.7
Q ss_pred HHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 256 ~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
.|....|.++++||- ..+-+......+.+++.++. ...+..||++|+..+
T Consensus 128 raL~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~---~~~~~tiiivsHd~~ 177 (246)
T cd03237 128 ACLSKDADIYLLDEP----------SAYLDVEQRLMASKVIRRFA---ENNEKTAFVVEHDII 177 (246)
T ss_pred HHHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 344567889999994 34457888888888887763 122456888888754
No 469
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00076 Score=63.79 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=26.0
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+-+.++..+.|.||+|+|||||++.++..+
T Consensus 45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345677789999999999999999999864
No 470
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00055 Score=63.27 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.3
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
-+.+...+.|.||+|+|||||+++++...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45677789999999999999999999854
No 471
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.49 E-value=0.00024 Score=70.64 Aligned_cols=30 Identities=33% Similarity=0.445 Sum_probs=25.3
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.+...+.|.||+|||||||++++|...
T Consensus 35 l~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 35 LTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345666779999999999999999999853
No 472
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.49 E-value=0.0012 Score=60.42 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=25.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.++++..+.|.||+|+|||||+++++...
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45677789999999999999999999853
No 473
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.49 E-value=0.00035 Score=67.85 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=65.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc------C---CceEEEechhh---------hHhhhch--------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT------D---ACFIRVIGSEL---------VQKYVGE-------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l------~---~~~i~v~~~el---------~~~~~g~-------------- 245 (376)
|+.+..-+.++||||+|||+++..+|... + ...++++..+. .+.+--.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 67888889999999999999999887521 1 24566665441 1110000
Q ss_pred -hh---HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 246 -GA---RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 246 -~~---~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
.. ..+..+........+.+|+||-|-+++....... +.-..-+..|.+++..+..+....++.||+|..
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNq 244 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITNQ 244 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 01 1122222223345788999999998864322111 111122344556666665444456676776643
No 474
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00098 Score=61.55 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=34.9
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
|....|.+|++||- ..+-+......+.+++..+. . +..||++|+..+.+
T Consensus 151 aL~~~p~llllDEP----------~~~LD~~~~~~l~~~l~~~~----~-~~tiii~sh~~~~~ 199 (236)
T cd03253 151 AILKNPPILLLDEA----------TSALDTHTEREIQAALRDVS----K-GRTTIVIAHRLSTI 199 (236)
T ss_pred HHhcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHhc----C-CCEEEEEcCCHHHH
Confidence 44467889999994 34457888888888887764 2 45678888876544
No 475
>PRK00625 shikimate kinase; Provisional
Probab=97.48 E-value=9.4e-05 Score=65.50 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=28.1
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
.++|.|.||+|||++++.+|..++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999998886654
No 476
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.48 E-value=0.00057 Score=71.22 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=26.3
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+-++++..+.|.||+|+|||||++.+++.+
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345778889999999999999999999864
No 477
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.48 E-value=8.6e-05 Score=63.26 Aligned_cols=32 Identities=38% Similarity=0.651 Sum_probs=28.8
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v 233 (376)
..++|++|-||||||+++..+|..++..++.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 34799999999999999999999999888765
No 478
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.48 E-value=0.00065 Score=71.21 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
-++++..+.|.||+|+|||||++.+++..
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45677889999999999999999999854
No 479
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.47 E-value=0.00047 Score=66.41 Aligned_cols=47 Identities=13% Similarity=0.267 Sum_probs=35.3
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|..+.|.++++|| +.++.+......+.+++..+. . +..||++|+..+
T Consensus 147 al~~~p~lliLDE----------Pt~gLD~~~~~~l~~~l~~~~----~-~~tiii~sH~l~ 193 (301)
T TIGR03522 147 ALIHDPKVLILDE----------PTTGLDPNQLVEIRNVIKNIG----K-DKTIILSTHIMQ 193 (301)
T ss_pred HHhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHhc----C-CCEEEEEcCCHH
Confidence 4446788999999 455678888899999888763 2 356788888654
No 480
>PLN02200 adenylate kinase family protein
Probab=97.47 E-value=0.00027 Score=65.66 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=33.0
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
.+.|..++|.|||||||||+|+.+|..++.. .+++.+++..
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 3455678999999999999999999999865 4666676654
No 481
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.47 E-value=0.00086 Score=70.20 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=62.9
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC---ceEEEech-hh-
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVIGS-EL- 238 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~---~~i~v~~~-el- 238 (376)
..++++++-..++.+.+.+++.. +...+|++||+|+||||++.++.+.++. .++.+.-+ |+
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~--------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK--------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh--------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 45788898888888888887753 3345789999999999999888887643 23322111 11
Q ss_pred ----hHhhhc-hhhHHHHHHHHHHHcCCCeEEEEcCCc
Q 017161 239 ----VQKYVG-EGARMVRELFQMARSKKACIVFFDEVD 271 (376)
Q Consensus 239 ----~~~~~g-~~~~~~~~lf~~a~~~~psIl~iDEiD 271 (376)
.+..+. .........+..+....|++|++.||-
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 111111 111235566777788999999999984
No 482
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.00074 Score=62.28 Aligned_cols=107 Identities=26% Similarity=0.367 Sum_probs=66.8
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCCc--eEEEec----------h---hh--------h---------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDAC--FIRVIG----------S---EL--------V--------------- 239 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~~--~i~v~~----------~---el--------~--------------- 239 (376)
-+.....+-|.|++|+|||||.+.+|.-+.-. -+.+++ . ++ .
T Consensus 49 ~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~ 128 (249)
T COG1134 49 EIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKV 128 (249)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHH
Confidence 34566779999999999999999999854211 111110 0 00 0
Q ss_pred ---------Hhhhch------hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 017161 240 ---------QKYVGE------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (376)
Q Consensus 240 ---------~~~~g~------~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 304 (376)
.+|... +.-..|-.|..|....|.|++|||+=+. ++...++.-...++++-
T Consensus 129 ~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav----------GD~~F~~K~~~rl~e~~---- 194 (249)
T COG1134 129 DEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV----------GDAAFQEKCLERLNELV---- 194 (249)
T ss_pred HHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc----------CCHHHHHHHHHHHHHHH----
Confidence 011111 2223566788888889999999998776 36666666666666552
Q ss_pred CCCeEEEEEeCCCC
Q 017161 305 RGNIKVLMATNRPD 318 (376)
Q Consensus 305 ~~~v~VI~tTn~~~ 318 (376)
..+..+|+.|+..+
T Consensus 195 ~~~~tiv~VSHd~~ 208 (249)
T COG1134 195 EKNKTIVLVSHDLG 208 (249)
T ss_pred HcCCEEEEEECCHH
Confidence 12356777777653
No 483
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00096 Score=60.54 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=35.0
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
|....|.++++|| +..+-+...+..+.+++..+. .+ ..||++|+.++.
T Consensus 144 al~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~----~~-~tii~vsH~~~~ 191 (211)
T cd03264 144 ALVGDPSILIVDE----------PTAGLDPEERIRFRNLLSELG----ED-RIVILSTHIVED 191 (211)
T ss_pred HHhcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHh----CC-CEEEEEcCCHHH
Confidence 3345688999999 445568888899999998774 12 568888886553
No 484
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.47 E-value=0.0013 Score=67.96 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEechhhhHhhhch----------------------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQKYVGE---------------------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~~el~~~~~g~---------------------------- 245 (376)
|+++...+||+|+||+|||+|+..++... +.+.+.++..+-.......
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Q ss_pred --------hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 246 --------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 246 --------~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
....+..+...+....+..++||-+..+...-.. .......+..++..+. ..++.+|++++..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~-----~~~~r~~l~~L~~~Lk----~~g~TvLlt~~~~ 177 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSN-----EAVVRRELRRLFAWLK----QKGVTAVITGERG 177 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccC-----HHHHHHHHHHHHHHHH----hCCCEEEEEECCc
Q ss_pred CCCCc-----cccCCCCcceEEEec
Q 017161 318 DTLDP-----ALLRPGRLDRKVEFG 337 (376)
Q Consensus 318 ~~ld~-----allr~gRfd~~i~~~ 337 (376)
....+ .... .+|.++.+.
T Consensus 178 ~~~~~~~~~~~~~~--laDgVI~L~ 200 (509)
T PRK09302 178 DEYGPLTRYGVEEF--VSDCVIILR 200 (509)
T ss_pred cCcCCccccCceEE--EeeEEEEEe
No 485
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.46 E-value=0.0001 Score=65.08 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=30.4
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
.+-++|.|+||+||||+|+.++..++.+++.++...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 3568999999999999999999998877776654433
No 486
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00064 Score=64.86 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=35.0
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
....|.+|++|| +..+-+......+.+++.++. ...+..||++|+..+.+
T Consensus 158 l~~~P~llllDE----------Pt~gLD~~~~~~l~~~l~~l~---~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 158 LAVEPKIIILDE----------STSMLDPAGKEQILKLIRKLK---KKNNLTVISITHDIDEA 207 (282)
T ss_pred HHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 345688999999 444568888888988888763 12245677788776543
No 487
>PRK13948 shikimate kinase; Provisional
Probab=97.46 E-value=0.00025 Score=63.35 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=31.2
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
+++..++|.|.+|||||++++.+|..++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999997554
No 488
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.46 E-value=0.0009 Score=61.55 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=25.3
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHh
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
+-+.++..+.|.||+|+|||||+++++..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34567778999999999999999999985
No 489
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.46 E-value=0.00066 Score=71.42 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=26.0
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 345778889999999999999999999854
No 490
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00075 Score=62.62 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=25.9
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.++..+.|.||+|+|||||++.++...
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345677889999999999999999999854
No 491
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.00017 Score=62.35 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=25.7
Q ss_pred eeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 205 VLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
+-+.|||||||||+++.+|..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999864
No 492
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0013 Score=66.80 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.3
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+-|.|++||||||++..+++.+
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 35677889999999999999999999743
No 493
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.45 E-value=0.00016 Score=70.57 Aligned_cols=72 Identities=21% Similarity=0.251 Sum_probs=48.6
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEE-echhhhH-h----------h--hchhhHHHHHHHHHHHcCCCe
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRV-IGSELVQ-K----------Y--VGEGARMVRELFQMARSKKAC 263 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v-~~~el~~-~----------~--~g~~~~~~~~lf~~a~~~~ps 263 (376)
...+++++.|++|+||||++++++..... .++.+ +..|+.- . . .+...-.+.+++..+....|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 45678999999999999999999987642 22222 1112211 0 0 111222456788888899999
Q ss_pred EEEEcCCc
Q 017161 264 IVFFDEVD 271 (376)
Q Consensus 264 Il~iDEiD 271 (376)
.|++.|+-
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999974
No 494
>PRK14532 adenylate kinase; Provisional
Probab=97.44 E-value=0.0001 Score=65.77 Aligned_cols=36 Identities=17% Similarity=0.458 Sum_probs=29.2
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
.++|.|||||||||+++.+|..++..+ ++..+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 489999999999999999999998665 455555544
No 495
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.44 E-value=0.00069 Score=61.20 Aligned_cols=107 Identities=22% Similarity=0.383 Sum_probs=58.4
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc---CCc--eEEEechh-----hhHhh---hc----------hhhHHHHHHHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT---DAC--FIRVIGSE-----LVQKY---VG----------EGARMVRELFQMAR 258 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l---~~~--~i~v~~~e-----l~~~~---~g----------~~~~~~~~lf~~a~ 258 (376)
|+.++|.||+|+||||.+--+|..+ +.. ++..+... -+..| .+ +....+++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999888888754 333 33333221 11111 11 12234555666666
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe-CCCCCCC
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT-NRPDTLD 321 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT-n~~~~ld 321 (376)
.....+|+||=.... ..+.+....+.+++..+. ...+.+++++ -..+.++
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~~----~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEALN----PDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHHS----SSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhcC----CccceEEEecccChHHHH
Confidence 666679999975433 123444556666666552 3344444444 4344443
No 496
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.44 E-value=0.00038 Score=63.91 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=25.4
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||+++++...
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45677789999999999999999999864
No 497
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.44 E-value=0.00036 Score=63.76 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=33.9
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
....|.++++||- ..+-+......+.+++.++.. . ..||++|+..+
T Consensus 155 l~~~p~llllDEP----------t~~LD~~~~~~l~~~l~~~~~----~-~tii~~sH~~~ 200 (220)
T cd03245 155 LLNDPPILLLDEP----------TSAMDMNSEERLKERLRQLLG----D-KTLIIITHRPS 200 (220)
T ss_pred HhcCCCEEEEeCc----------cccCCHHHHHHHHHHHHHhcC----C-CEEEEEeCCHH
Confidence 3456889999994 445688888889998887641 2 56888888765
No 498
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.44 E-value=0.001 Score=61.66 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=35.4
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
....|.++++|| +.++.+......+.+++.++. ...+..||++|+.++.
T Consensus 168 l~~~p~llllDE----------Pt~~LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~ 216 (236)
T cd03267 168 LLHEPEILFLDE----------PTIGLDVVAQENIRNFLKEYN---RERGTTVLLTSHYMKD 216 (236)
T ss_pred HhcCCCEEEEcC----------CCCCCCHHHHHHHHHHHHHHH---hcCCCEEEEEecCHHH
Confidence 345688999999 445568888999999888763 1234568888887653
No 499
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.43 E-value=0.0011 Score=61.05 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=34.3
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
...|.++++||- .++-+......+.+++.++. ...+..||++|+..+.
T Consensus 147 ~~~p~illlDEP----------t~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 147 VTRPKLLLLDEP----------TEGIQPSIIKDIGRVIRRLR---AEGGMAILLVEQYLDF 194 (230)
T ss_pred hcCCCEEEecCC----------cccCCHHHHHHHHHHHHHHH---HcCCcEEEEEeCCHHH
Confidence 356889999993 44568888888888888763 1224568888887643
No 500
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.43 E-value=0.00019 Score=64.12 Aligned_cols=72 Identities=25% Similarity=0.344 Sum_probs=46.4
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEech-hhhHh---h----------hchhhHHHHHHHHHHHcCCCe
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGS-ELVQK---Y----------VGEGARMVRELFQMARSKKAC 263 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~-el~~~---~----------~g~~~~~~~~lf~~a~~~~ps 263 (376)
+....++|.||+|+||||++++++..+.. ..+.+... ++... + .+.....+.+++..+....|+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 45678999999999999999999987532 22222111 11100 0 011123356677777788899
Q ss_pred EEEEcCCc
Q 017161 264 IVFFDEVD 271 (376)
Q Consensus 264 Il~iDEiD 271 (376)
++++.|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999983
Done!