Query 017161
Match_columns 376
No_of_seqs 484 out of 3044
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 09:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_H 26S protease regulatory 100.0 5.3E-79 1.8E-83 606.8 28.0 366 11-376 22-417 (467)
2 4b4t_J 26S protease regulatory 100.0 1.8E-67 6.1E-72 518.1 31.2 335 33-376 22-356 (405)
3 4b4t_I 26S protease regulatory 100.0 4.3E-64 1.5E-68 495.4 29.0 295 78-376 96-390 (437)
4 4b4t_L 26S protease subunit RP 100.0 4.2E-63 1.4E-67 493.7 32.7 338 21-376 52-389 (437)
5 4b4t_M 26S protease regulatory 100.0 7.1E-63 2.4E-67 491.7 28.9 306 71-376 62-389 (434)
6 4b4t_K 26S protease regulatory 100.0 9.4E-62 3.2E-66 483.2 32.5 335 33-376 46-381 (428)
7 3cf2_A TER ATPase, transitiona 100.0 2.1E-45 7.1E-50 389.4 13.6 225 152-376 461-685 (806)
8 3cf2_A TER ATPase, transitiona 100.0 4.4E-43 1.5E-47 371.6 17.1 214 160-376 196-409 (806)
9 3cf0_A Transitional endoplasmi 100.0 2.4E-38 8.4E-43 302.7 18.0 218 159-376 6-223 (301)
10 2x8a_A Nuclear valosin-contain 100.0 3E-37 1E-41 291.6 15.6 213 161-376 3-220 (274)
11 2ce7_A Cell division protein F 100.0 1.5E-36 5.1E-41 306.3 20.4 214 162-376 10-223 (476)
12 3h4m_A Proteasome-activating n 100.0 4.8E-36 1.6E-40 283.2 20.0 222 155-376 4-225 (285)
13 1xwi_A SKD1 protein; VPS4B, AA 100.0 4.8E-36 1.6E-40 289.6 19.2 212 159-376 3-217 (322)
14 1lv7_A FTSH; alpha/beta domain 100.0 3.1E-35 1.1E-39 274.1 21.1 219 157-376 1-219 (257)
15 3eie_A Vacuolar protein sortin 100.0 2.8E-35 9.6E-40 283.9 18.8 214 157-376 7-222 (322)
16 2qp9_X Vacuolar protein sortin 100.0 1.6E-34 5.6E-39 282.5 16.2 217 154-376 37-255 (355)
17 3hu3_A Transitional endoplasmi 100.0 7.8E-34 2.7E-38 288.2 20.2 212 162-376 198-409 (489)
18 2dhr_A FTSH; AAA+ protein, hex 100.0 5.7E-34 2E-38 289.0 18.6 213 163-376 26-238 (499)
19 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.5E-33 5.3E-38 262.2 18.0 213 163-376 1-216 (262)
20 2zan_A Vacuolar protein sortin 100.0 9.2E-34 3.1E-38 285.0 15.8 216 155-376 121-339 (444)
21 1ixz_A ATP-dependent metallopr 100.0 1.1E-32 3.7E-37 256.4 21.4 217 159-376 7-223 (254)
22 1ypw_A Transitional endoplasmi 100.0 9.3E-35 3.2E-39 311.3 -0.9 219 158-376 467-685 (806)
23 1iy2_A ATP-dependent metallopr 100.0 3.1E-31 1.1E-35 250.2 22.8 217 159-376 31-247 (278)
24 3b9p_A CG5977-PA, isoform A; A 100.0 1.5E-31 5E-36 254.0 17.4 217 157-376 10-227 (297)
25 2r62_A Cell division protease 100.0 1.2E-33 4.2E-38 264.6 0.7 215 161-376 4-220 (268)
26 3d8b_A Fidgetin-like protein 1 100.0 5.7E-31 1.9E-35 257.5 17.0 213 158-376 74-289 (357)
27 3vfd_A Spastin; ATPase, microt 100.0 2.3E-30 7.9E-35 255.8 18.6 218 152-375 99-319 (389)
28 1ypw_A Transitional endoplasmi 100.0 1.6E-29 5.4E-34 270.9 21.3 213 161-376 197-409 (806)
29 3t15_A Ribulose bisphosphate c 100.0 1.4E-29 4.8E-34 241.1 9.3 174 197-376 31-218 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 1.1E-27 3.9E-32 241.4 -5.0 195 162-372 31-252 (456)
31 3syl_A Protein CBBX; photosynt 99.9 6.9E-22 2.3E-26 188.0 13.6 188 169-369 32-235 (309)
32 3pfi_A Holliday junction ATP-d 99.8 2.7E-20 9.3E-25 179.4 18.9 189 156-373 17-219 (338)
33 1g41_A Heat shock protein HSLU 99.8 3.4E-22 1.2E-26 199.3 5.2 169 168-348 15-188 (444)
34 1hqc_A RUVB; extended AAA-ATPa 99.8 1.8E-19 6.3E-24 172.2 18.7 185 159-373 3-203 (324)
35 3u61_B DNA polymerase accessor 99.8 5.1E-19 1.8E-23 169.6 16.2 181 156-373 14-208 (324)
36 1jbk_A CLPB protein; beta barr 99.8 9E-20 3.1E-24 159.4 9.8 163 160-348 14-194 (195)
37 1d2n_A N-ethylmaleimide-sensit 99.8 2.4E-19 8.3E-24 167.9 13.1 194 168-373 33-229 (272)
38 2chg_A Replication factor C sm 99.8 2.2E-18 7.6E-23 154.0 18.3 180 156-373 5-196 (226)
39 3uk6_A RUVB-like 2; hexameric 99.8 4E-19 1.4E-23 173.0 13.7 182 163-371 39-292 (368)
40 3hws_A ATP-dependent CLP prote 99.8 5E-19 1.7E-23 172.8 14.3 179 170-350 17-267 (363)
41 3pxi_A Negative regulator of g 99.8 1.4E-19 4.9E-24 192.9 9.9 162 168-354 491-677 (758)
42 3m6a_A ATP-dependent protease 99.8 4.6E-20 1.6E-24 189.6 5.7 171 164-352 77-266 (543)
43 1ofh_A ATP-dependent HSL prote 99.8 5.7E-19 2E-23 167.2 11.5 179 168-350 15-213 (310)
44 1sxj_A Activator 1 95 kDa subu 99.8 5.7E-19 1.9E-23 180.5 10.5 199 154-372 25-243 (516)
45 1l8q_A Chromosomal replication 99.8 1.3E-17 4.5E-22 160.0 17.6 182 162-370 5-198 (324)
46 3pxg_A Negative regulator of g 99.8 1.8E-18 6.1E-23 174.7 10.8 176 158-374 170-365 (468)
47 3pvs_A Replication-associated 99.7 1.1E-17 3.9E-22 167.8 14.7 174 158-372 16-206 (447)
48 2p65_A Hypothetical protein PF 99.7 3.6E-18 1.2E-22 148.9 9.7 156 160-340 14-187 (187)
49 2chq_A Replication factor C sm 99.7 6E-18 2.1E-22 160.7 12.0 184 156-373 5-196 (319)
50 1iqp_A RFCS; clamp loader, ext 99.7 3.4E-17 1.1E-21 156.0 16.6 184 156-373 13-204 (327)
51 1sxj_D Activator 1 41 kDa subu 99.7 1.6E-17 5.4E-22 160.3 14.4 180 156-373 25-227 (353)
52 1sxj_B Activator 1 37 kDa subu 99.7 2.6E-17 8.8E-22 156.6 15.6 180 156-373 9-201 (323)
53 1njg_A DNA polymerase III subu 99.7 5.7E-17 1.9E-21 146.4 17.0 180 157-373 12-220 (250)
54 1sxj_E Activator 1 40 kDa subu 99.7 2.9E-17 9.8E-22 159.0 15.6 182 156-373 2-229 (354)
55 4fcw_A Chaperone protein CLPB; 99.7 3E-17 1E-21 155.8 14.3 166 168-354 17-231 (311)
56 1r6b_X CLPA protein; AAA+, N-t 99.7 3.8E-17 1.3E-21 174.1 16.6 163 169-354 459-668 (758)
57 2z4s_A Chromosomal replication 99.7 4.4E-17 1.5E-21 163.3 16.1 184 162-373 99-298 (440)
58 1qvr_A CLPB protein; coiled co 99.7 8.2E-18 2.8E-22 181.6 11.1 189 159-373 161-371 (854)
59 2v1u_A Cell division control p 99.7 6.9E-17 2.4E-21 157.1 15.9 186 165-371 16-236 (387)
60 3pxi_A Negative regulator of g 99.7 1.2E-17 4E-22 178.1 10.8 175 158-373 170-364 (758)
61 1um8_A ATP-dependent CLP prote 99.7 7.2E-17 2.5E-21 158.1 15.4 179 169-349 22-283 (376)
62 1r6b_X CLPA protein; AAA+, N-t 99.7 4E-17 1.4E-21 174.0 12.6 189 159-373 177-388 (758)
63 3te6_A Regulatory protein SIR3 99.7 2.2E-17 7.6E-22 158.2 8.7 160 170-355 22-214 (318)
64 2qby_B CDC6 homolog 3, cell di 99.7 1.4E-16 4.9E-21 155.3 14.0 179 168-375 20-236 (384)
65 1jr3_A DNA polymerase III subu 99.7 2.6E-16 9E-21 152.9 14.9 179 158-373 6-213 (373)
66 1g8p_A Magnesium-chelatase 38 99.7 3.8E-16 1.3E-20 150.6 15.5 164 160-351 16-231 (350)
67 3bos_A Putative DNA replicatio 99.7 4.2E-16 1.4E-20 141.5 14.0 173 163-372 23-208 (242)
68 1sxj_C Activator 1 40 kDa subu 99.7 1.7E-15 5.8E-20 146.4 18.7 179 155-372 12-203 (340)
69 2r44_A Uncharacterized protein 99.7 2.6E-16 8.9E-21 151.3 12.0 164 162-354 21-200 (331)
70 1in4_A RUVB, holliday junction 99.6 6.8E-15 2.3E-19 142.0 19.3 187 158-373 15-215 (334)
71 1qvr_A CLPB protein; coiled co 99.6 1E-15 3.4E-20 165.3 11.8 166 167-353 557-771 (854)
72 2qby_A CDC6 homolog 1, cell di 99.6 6.6E-15 2.2E-19 142.9 15.8 184 165-371 17-232 (386)
73 3n70_A Transport activator; si 99.6 1.6E-15 5.3E-20 128.9 9.3 112 169-317 2-116 (145)
74 3co5_A Putative two-component 99.6 4.8E-16 1.6E-20 131.9 5.7 112 169-317 5-116 (143)
75 2bjv_A PSP operon transcriptio 99.6 7.4E-15 2.5E-19 136.7 13.4 161 165-352 3-194 (265)
76 1fnn_A CDC6P, cell division co 99.6 7.4E-15 2.5E-19 143.1 14.0 183 166-371 15-228 (389)
77 3cmw_A Protein RECA, recombina 99.6 3.4E-15 1.2E-19 168.2 8.0 156 161-317 1013-1218(1706)
78 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.7E-14 5.7E-19 146.4 10.8 156 169-352 23-196 (500)
79 1a5t_A Delta prime, HOLB; zinc 99.5 2.6E-13 9E-18 130.9 17.5 164 172-373 6-197 (334)
80 1ojl_A Transcriptional regulat 99.5 3.6E-14 1.2E-18 135.4 10.2 157 168-352 2-190 (304)
81 2gno_A DNA polymerase III, gam 99.5 4.7E-13 1.6E-17 127.7 13.7 142 172-352 1-152 (305)
82 2wg5_A General control protein 99.4 2.9E-13 9.8E-18 109.3 9.5 103 36-161 7-109 (109)
83 3ec2_A DNA replication protein 99.4 7.2E-13 2.5E-17 116.0 10.0 133 161-318 3-144 (180)
84 3f9v_A Minichromosome maintena 99.4 1E-13 3.5E-18 143.7 3.9 166 169-354 296-492 (595)
85 1w5s_A Origin recognition comp 99.3 2.1E-11 7.1E-16 119.6 14.7 189 166-371 20-250 (412)
86 4akg_A Glutathione S-transfera 99.3 1.4E-11 4.7E-16 144.5 14.2 139 201-354 1266-1433(2695)
87 3k1j_A LON protease, ATP-depen 99.2 1.3E-11 4.6E-16 128.2 9.7 53 160-227 33-85 (604)
88 2qen_A Walker-type ATPase; unk 99.2 5.8E-10 2E-14 106.5 20.1 186 160-374 4-239 (350)
89 2fna_A Conserved hypothetical 99.2 5E-10 1.7E-14 107.1 19.1 182 160-374 5-243 (357)
90 2w58_A DNAI, primosome compone 99.1 1.8E-10 6E-15 102.3 8.5 100 163-273 20-127 (202)
91 2kjq_A DNAA-related protein; s 99.1 1E-10 3.5E-15 99.8 5.9 105 201-336 35-145 (149)
92 1ny5_A Transcriptional regulat 99.0 5E-10 1.7E-14 110.2 10.4 150 167-344 136-313 (387)
93 2vhj_A Ntpase P4, P4; non- hyd 99.0 6.6E-11 2.2E-15 112.9 2.1 122 198-324 119-242 (331)
94 2qgz_A Helicase loader, putati 99.0 7.2E-10 2.5E-14 105.7 7.2 129 164-317 120-258 (308)
95 3h43_A Proteasome-activating n 98.9 4.3E-09 1.5E-13 80.7 7.0 70 75-148 8-77 (85)
96 3dzd_A Transcriptional regulat 98.9 1.1E-08 3.8E-13 99.8 11.7 158 168-352 129-316 (368)
97 1svm_A Large T antigen; AAA+ f 98.8 2.5E-09 8.6E-14 104.6 5.5 120 197-338 164-284 (377)
98 4akg_A Glutathione S-transfera 98.8 3.4E-08 1.1E-12 116.3 15.0 126 202-348 645-789 (2695)
99 2r2a_A Uncharacterized protein 98.8 5.6E-09 1.9E-13 93.3 6.2 127 203-342 6-156 (199)
100 3cmu_A Protein RECA, recombina 98.7 2.5E-08 8.7E-13 114.0 10.8 125 190-314 1412-1561(2050)
101 1tue_A Replication protein E1; 98.7 1.6E-08 5.6E-13 90.3 5.6 33 198-230 54-86 (212)
102 3f8t_A Predicted ATPase involv 98.6 5.3E-08 1.8E-12 97.1 8.9 121 204-342 241-384 (506)
103 3vkg_A Dynein heavy chain, cyt 98.6 1.8E-07 6E-12 111.0 13.7 139 201-353 1303-1470(3245)
104 1u0j_A DNA replication protein 98.5 1.7E-07 5.9E-12 87.1 8.4 121 201-351 103-250 (267)
105 1ye8_A Protein THEP1, hypothet 98.4 7.1E-07 2.4E-11 78.0 9.4 122 204-342 2-166 (178)
106 3vkg_A Dynein heavy chain, cyt 98.4 1.9E-06 6.5E-11 102.4 13.5 125 203-348 605-749 (3245)
107 2ehv_A Hypothetical protein PH 98.4 1.4E-06 4.9E-11 79.0 9.7 129 198-337 26-206 (251)
108 2w0m_A SSO2452; RECA, SSPF, un 98.3 1.8E-06 6.1E-11 77.2 9.6 109 198-317 19-168 (235)
109 3m9b_A Proteasome-associated A 98.3 2.2E-06 7.5E-11 77.6 9.9 75 73-154 87-161 (251)
110 1jr3_D DNA polymerase III, del 98.3 1.9E-06 6.6E-11 82.6 9.8 144 201-372 17-176 (343)
111 3sfz_A APAF-1, apoptotic pepti 98.3 1.1E-05 3.8E-10 89.1 17.3 169 165-373 121-320 (1249)
112 1n0w_A DNA repair protein RAD5 98.3 2.4E-06 8.2E-11 77.2 9.8 78 198-275 20-133 (243)
113 1z6t_A APAF-1, apoptotic prote 98.3 7E-06 2.4E-10 84.3 14.4 165 167-373 123-320 (591)
114 1xp8_A RECA protein, recombina 98.3 2.2E-06 7.5E-11 83.4 9.4 119 198-316 70-210 (366)
115 2zr9_A Protein RECA, recombina 98.3 6.8E-07 2.3E-11 86.5 5.6 78 198-275 57-153 (349)
116 3kw6_A 26S protease regulatory 98.2 4.6E-07 1.6E-11 68.2 2.9 40 337-376 1-40 (78)
117 2cvh_A DNA repair and recombin 98.2 1.3E-06 4.6E-11 77.6 6.3 40 198-237 16-55 (220)
118 3hr8_A Protein RECA; alpha and 98.2 1.7E-06 5.7E-11 83.9 7.2 119 198-316 57-197 (356)
119 3cmu_A Protein RECA, recombina 98.2 1.6E-06 5.4E-11 99.5 7.4 131 187-317 714-869 (2050)
120 2krk_A 26S protease regulatory 98.1 7.1E-07 2.4E-11 68.6 2.2 41 336-376 8-48 (86)
121 1u94_A RECA protein, recombina 98.1 3.8E-06 1.3E-10 81.5 7.4 78 198-275 59-155 (356)
122 2a5y_B CED-4; apoptosis; HET: 98.1 2.3E-05 8E-10 80.1 13.7 165 171-373 131-329 (549)
123 3upu_A ATP-dependent DNA helic 98.1 4.8E-06 1.6E-10 83.3 8.3 62 151-226 7-69 (459)
124 2z43_A DNA repair and recombin 98.1 3.8E-06 1.3E-10 80.2 6.6 117 198-316 103-257 (324)
125 4a74_A DNA repair and recombin 98.0 6E-06 2.1E-10 73.8 6.0 29 198-226 21-49 (231)
126 1v5w_A DMC1, meiotic recombina 98.0 6.6E-06 2.3E-10 79.3 6.2 119 198-317 118-274 (343)
127 3lda_A DNA repair protein RAD5 98.0 8.8E-06 3E-10 80.1 7.0 118 198-316 174-327 (400)
128 2dr3_A UPF0273 protein PH0284; 97.9 2.4E-05 8.1E-10 70.6 8.9 38 198-235 19-59 (247)
129 1pzn_A RAD51, DNA repair and r 97.9 1.2E-05 4E-10 77.8 6.9 41 197-237 126-175 (349)
130 3io5_A Recombination and repai 97.9 1.4E-05 4.7E-10 76.0 6.9 117 198-315 25-170 (333)
131 3jvv_A Twitching mobility prot 97.9 2.5E-05 8.4E-10 75.7 8.2 97 201-318 122-232 (356)
132 3gfo_A Cobalt import ATP-bindi 97.9 6.5E-05 2.2E-09 70.1 10.6 52 256-320 156-207 (275)
133 1qhx_A CPT, protein (chloramph 97.8 1.3E-05 4.4E-10 68.9 5.0 38 202-239 3-40 (178)
134 2orw_A Thymidine kinase; TMTK, 97.8 4.9E-06 1.7E-10 73.0 2.3 23 203-225 4-26 (184)
135 2b8t_A Thymidine kinase; deoxy 97.8 3.3E-05 1.1E-09 69.9 7.5 70 203-273 13-101 (223)
136 2ff7_A Alpha-hemolysin translo 97.8 0.00012 4E-09 67.2 11.3 48 257-319 159-206 (247)
137 2cbz_A Multidrug resistance-as 97.8 4E-05 1.4E-09 69.9 8.0 30 197-226 26-55 (237)
138 3tif_A Uncharacterized ABC tra 97.8 0.00012 3.9E-09 66.7 11.0 50 256-318 158-207 (235)
139 3vlf_B 26S protease regulatory 97.8 6.5E-06 2.2E-10 63.4 2.0 37 340-376 2-38 (88)
140 1vpl_A ABC transporter, ATP-bi 97.8 0.00014 4.7E-09 67.1 11.3 48 257-318 160-207 (256)
141 2i1q_A DNA repair and recombin 97.8 1.6E-05 5.6E-10 75.6 5.1 117 198-315 94-257 (322)
142 1nlf_A Regulatory protein REPA 97.8 3.2E-05 1.1E-09 72.0 6.6 28 198-225 26-53 (279)
143 2iut_A DNA translocase FTSK; n 97.8 0.00027 9.4E-09 72.1 13.8 74 263-349 345-420 (574)
144 3rlf_A Maltose/maltodextrin im 97.8 7.2E-05 2.5E-09 73.0 9.1 49 257-318 147-195 (381)
145 3tui_C Methionine import ATP-b 97.7 0.00012 4E-09 71.1 10.4 50 256-318 176-225 (366)
146 4g1u_C Hemin import ATP-bindin 97.7 5.9E-05 2E-09 70.0 8.0 45 261-318 165-209 (266)
147 2zts_A Putative uncharacterize 97.7 8.1E-05 2.8E-09 67.1 8.8 38 198-235 26-67 (251)
148 2pcj_A ABC transporter, lipopr 97.7 0.00014 4.7E-09 65.7 10.2 47 258-318 155-201 (224)
149 3nh6_A ATP-binding cassette SU 97.7 6.8E-05 2.3E-09 71.1 8.3 30 197-226 75-104 (306)
150 3vaa_A Shikimate kinase, SK; s 97.7 2E-05 6.8E-10 69.5 4.4 41 198-240 21-61 (199)
151 2ixe_A Antigen peptide transpo 97.7 0.00012 4E-09 68.2 9.8 51 255-318 168-218 (271)
152 2eyu_A Twitching motility prot 97.7 3.3E-05 1.1E-09 71.6 5.9 72 199-270 22-107 (261)
153 3aji_B S6C, proteasome (prosom 97.7 1.4E-05 4.8E-10 60.7 2.7 38 339-376 1-38 (83)
154 3fvq_A Fe(3+) IONS import ATP- 97.7 0.00017 5.7E-09 69.9 10.5 29 198-226 26-54 (359)
155 2yyz_A Sugar ABC transporter, 97.7 0.00016 5.6E-09 70.0 10.3 51 255-318 145-195 (359)
156 2yz2_A Putative ABC transporte 97.7 0.00037 1.2E-08 64.6 12.1 50 257-320 152-201 (266)
157 1z47_A CYSA, putative ABC-tran 97.7 0.00017 5.9E-09 69.7 10.0 49 257-318 159-207 (355)
158 4gp7_A Metallophosphoesterase; 97.6 3.1E-05 1.1E-09 66.7 4.2 23 199-221 6-28 (171)
159 3trf_A Shikimate kinase, SK; a 97.6 3E-05 1E-09 67.0 4.2 32 202-233 5-36 (185)
160 2rhm_A Putative kinase; P-loop 97.6 2.9E-05 9.8E-10 67.5 4.0 34 199-232 2-35 (193)
161 2nq2_C Hypothetical ABC transp 97.6 0.0001 3.6E-09 67.8 8.0 49 257-318 142-190 (253)
162 1g6h_A High-affinity branched- 97.6 0.00026 9E-09 65.2 10.5 49 258-320 168-216 (257)
163 2r6a_A DNAB helicase, replicat 97.6 0.00011 3.6E-09 73.5 8.3 38 198-235 199-240 (454)
164 1cr0_A DNA primase/helicase; R 97.6 4.7E-05 1.6E-09 71.3 5.4 30 197-226 30-59 (296)
165 1zp6_A Hypothetical protein AT 97.6 3E-05 1E-09 67.3 3.7 40 199-238 6-45 (191)
166 1v43_A Sugar-binding transport 97.6 0.00019 6.5E-09 69.8 9.7 49 257-318 155-203 (372)
167 2ghi_A Transport protein; mult 97.6 0.00025 8.6E-09 65.5 10.0 46 259-319 171-216 (260)
168 3cmw_A Protein RECA, recombina 97.6 8.4E-05 2.9E-09 84.5 8.0 127 191-317 1417-1568(1706)
169 2ius_A DNA translocase FTSK; n 97.6 0.00026 9E-09 71.6 10.9 76 261-349 296-374 (512)
170 2p5t_B PEZT; postsegregational 97.6 0.00015 5E-09 66.5 8.2 39 200-238 30-68 (253)
171 3d31_A Sulfate/molybdate ABC t 97.6 0.00024 8.1E-09 68.5 9.9 49 257-318 141-189 (348)
172 2it1_A 362AA long hypothetical 97.6 0.00018 6.3E-09 69.7 9.0 29 198-226 25-53 (362)
173 2onk_A Molybdate/tungstate ABC 97.6 0.00017 5.9E-09 65.8 8.3 49 257-318 140-188 (240)
174 1tf7_A KAIC; homohexamer, hexa 97.6 0.0003 1E-08 71.5 10.8 110 198-317 277-417 (525)
175 2olj_A Amino acid ABC transpor 97.6 0.0004 1.4E-08 64.3 10.7 48 257-318 173-220 (263)
176 1gvn_B Zeta; postsegregational 97.6 0.00016 5.6E-09 67.7 8.2 39 200-238 31-69 (287)
177 1tf7_A KAIC; homohexamer, hexa 97.6 0.00034 1.2E-08 71.0 11.1 114 198-320 35-188 (525)
178 2qi9_C Vitamin B12 import ATP- 97.5 0.00017 5.8E-09 66.2 7.7 29 198-226 22-50 (249)
179 2pjz_A Hypothetical protein ST 97.5 0.00049 1.7E-08 63.7 10.8 46 257-319 142-187 (263)
180 1kag_A SKI, shikimate kinase I 97.5 5.9E-05 2E-09 64.4 4.2 36 202-239 4-39 (173)
181 3iij_A Coilin-interacting nucl 97.5 7.3E-05 2.5E-09 64.4 4.8 33 200-232 9-41 (180)
182 2ewv_A Twitching motility prot 97.5 5.9E-05 2E-09 73.5 4.5 77 194-270 128-218 (372)
183 2d2e_A SUFC protein; ABC-ATPas 97.5 0.0003 1E-08 64.6 8.9 46 260-319 160-205 (250)
184 1g29_1 MALK, maltose transport 97.5 0.0002 6.8E-09 69.7 7.9 49 257-318 153-201 (372)
185 3gd7_A Fusion complex of cysti 97.5 0.00018 6.2E-09 70.4 7.6 28 198-225 43-70 (390)
186 3thx_B DNA mismatch repair pro 97.5 0.00033 1.1E-08 75.6 10.3 108 199-319 670-798 (918)
187 1y63_A LMAJ004144AAA protein; 97.5 4.7E-05 1.6E-09 66.2 3.0 37 200-238 8-45 (184)
188 1sgw_A Putative ABC transporte 97.5 0.00024 8.3E-09 63.7 7.7 29 198-226 31-59 (214)
189 4a82_A Cystic fibrosis transme 97.5 0.00035 1.2E-08 71.9 9.9 30 197-226 362-391 (578)
190 3kb2_A SPBC2 prophage-derived 97.5 6.1E-05 2.1E-09 64.0 3.6 31 204-234 3-33 (173)
191 2r8r_A Sensor protein; KDPD, P 97.5 0.00044 1.5E-08 62.5 9.3 124 204-346 8-172 (228)
192 2pt7_A CAG-ALFA; ATPase, prote 97.5 6.8E-05 2.3E-09 71.8 4.2 72 200-271 169-250 (330)
193 1via_A Shikimate kinase; struc 97.4 8.1E-05 2.8E-09 63.9 4.1 34 204-239 6-39 (175)
194 1ji0_A ABC transporter; ATP bi 97.4 0.00052 1.8E-08 62.5 9.7 48 257-318 153-200 (240)
195 3qf4_B Uncharacterized ABC tra 97.4 0.00043 1.5E-08 71.5 10.2 53 253-320 501-553 (598)
196 2ihy_A ABC transporter, ATP-bi 97.4 0.00031 1.1E-08 65.6 8.1 29 198-226 43-71 (279)
197 1b0u_A Histidine permease; ABC 97.4 0.00042 1.4E-08 64.1 8.9 46 259-318 169-214 (262)
198 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00028 9.4E-09 65.0 7.5 38 202-239 4-44 (260)
199 2q6t_A DNAB replication FORK h 97.4 0.00025 8.5E-09 70.5 7.7 38 198-235 196-237 (444)
200 1g5t_A COB(I)alamin adenosyltr 97.4 0.00088 3E-08 59.2 10.2 116 203-336 29-177 (196)
201 2iyv_A Shikimate kinase, SK; t 97.4 0.00011 3.8E-09 63.4 4.4 35 203-239 3-37 (184)
202 1oxx_K GLCV, glucose, ABC tran 97.4 0.00019 6.5E-09 69.4 6.4 29 198-226 27-55 (353)
203 3bh0_A DNAB-like replicative h 97.4 0.00042 1.4E-08 65.7 8.6 38 198-235 64-104 (315)
204 3dm5_A SRP54, signal recogniti 97.4 0.0011 3.7E-08 65.9 11.4 73 201-273 99-194 (443)
205 1zuh_A Shikimate kinase; alpha 97.4 0.00011 3.9E-09 62.4 3.9 37 203-241 8-44 (168)
206 1vt4_I APAF-1 related killer D 97.3 0.00066 2.2E-08 73.8 10.4 44 170-225 130-173 (1221)
207 3umf_A Adenylate kinase; rossm 97.3 0.00022 7.6E-09 64.1 5.8 41 199-241 26-66 (217)
208 3b5x_A Lipid A export ATP-bind 97.3 0.00063 2.2E-08 70.0 10.0 30 197-226 364-393 (582)
209 3qf4_A ABC transporter, ATP-bi 97.3 0.00031 1.1E-08 72.4 7.7 50 254-318 490-539 (587)
210 2cdn_A Adenylate kinase; phosp 97.3 0.00015 5.2E-09 63.6 4.5 31 202-232 20-50 (201)
211 1aky_A Adenylate kinase; ATP:A 97.3 0.00014 4.7E-09 64.9 4.2 32 201-232 3-34 (220)
212 3thx_A DNA mismatch repair pro 97.3 0.00064 2.2E-08 73.5 10.1 104 202-318 662-786 (934)
213 2ze6_A Isopentenyl transferase 97.3 0.00012 4E-09 67.4 3.7 32 204-235 3-34 (253)
214 2c95_A Adenylate kinase 1; tra 97.3 0.00014 4.9E-09 63.1 4.1 38 201-240 8-45 (196)
215 3e1s_A Exodeoxyribonuclease V, 97.3 0.0002 6.7E-09 73.7 5.7 72 202-273 204-291 (574)
216 3t61_A Gluconokinase; PSI-biol 97.3 0.00017 5.8E-09 63.4 4.5 31 202-232 18-48 (202)
217 3cm0_A Adenylate kinase; ATP-b 97.3 9.8E-05 3.3E-09 63.8 2.9 35 202-238 4-38 (186)
218 3b60_A Lipid A export ATP-bind 97.3 0.0011 3.6E-08 68.3 11.1 30 197-226 364-393 (582)
219 1tev_A UMP-CMP kinase; ploop, 97.3 0.00013 4.4E-09 63.1 3.6 36 202-239 3-38 (196)
220 1e6c_A Shikimate kinase; phosp 97.3 0.00017 5.8E-09 61.4 4.1 35 203-239 3-37 (173)
221 2vli_A Antibiotic resistance p 97.3 0.00012 4E-09 63.0 3.0 30 202-231 5-34 (183)
222 1zd8_A GTP:AMP phosphotransfer 97.3 0.00015 5.2E-09 65.1 3.8 33 200-232 5-37 (227)
223 3j16_B RLI1P; ribosome recycli 97.3 0.00063 2.2E-08 70.4 8.9 50 256-319 234-283 (608)
224 4eun_A Thermoresistant glucoki 97.3 0.00018 6.3E-09 63.2 4.2 37 200-238 27-63 (200)
225 3lw7_A Adenylate kinase relate 97.3 0.00016 5.6E-09 61.0 3.8 34 204-240 3-36 (179)
226 3kl4_A SRP54, signal recogniti 97.2 0.0015 5.1E-08 64.7 11.1 73 201-273 96-191 (433)
227 1vma_A Cell division protein F 97.2 0.0024 8.1E-08 60.4 12.0 72 200-271 102-196 (306)
228 1ly1_A Polynucleotide kinase; 97.2 0.00011 3.9E-09 62.7 2.6 34 203-238 3-37 (181)
229 1qf9_A UMP/CMP kinase, protein 97.2 0.00018 6.2E-09 62.1 3.9 37 202-240 6-42 (194)
230 2c9o_A RUVB-like 1; hexameric 97.2 0.00033 1.1E-08 69.9 6.2 89 262-370 296-398 (456)
231 3be4_A Adenylate kinase; malar 97.2 0.00017 5.6E-09 64.4 3.4 32 202-233 5-36 (217)
232 1knq_A Gluconate kinase; ALFA/ 97.2 0.00019 6.4E-09 61.4 3.7 35 202-238 8-42 (175)
233 1kht_A Adenylate kinase; phosp 97.2 0.00017 5.6E-09 62.3 3.3 26 202-227 3-28 (192)
234 2bwj_A Adenylate kinase 5; pho 97.2 0.0002 6.7E-09 62.4 3.8 36 202-239 12-47 (199)
235 2pze_A Cystic fibrosis transme 97.2 0.00085 2.9E-08 60.6 8.0 29 198-226 30-58 (229)
236 1ak2_A Adenylate kinase isoenz 97.2 0.00025 8.6E-09 63.9 4.4 36 202-239 16-51 (233)
237 3dl0_A Adenylate kinase; phosp 97.2 0.00023 7.9E-09 63.1 4.0 30 204-233 2-31 (216)
238 3fb4_A Adenylate kinase; psych 97.2 0.00024 8.3E-09 62.9 4.0 30 204-233 2-31 (216)
239 2pez_A Bifunctional 3'-phospho 97.2 0.00028 9.7E-09 60.7 4.3 38 201-238 4-44 (179)
240 1zak_A Adenylate kinase; ATP:A 97.2 0.0002 6.8E-09 64.0 3.4 31 201-231 4-34 (222)
241 2pt5_A Shikimate kinase, SK; a 97.2 0.00027 9.1E-09 59.9 4.0 29 204-232 2-30 (168)
242 3tlx_A Adenylate kinase 2; str 97.1 0.00023 8E-09 64.8 3.8 39 200-240 27-65 (243)
243 3uie_A Adenylyl-sulfate kinase 97.1 0.00031 1E-08 61.8 4.4 39 200-238 23-64 (200)
244 4f4c_A Multidrug resistance pr 97.1 0.0017 5.7E-08 73.1 11.2 31 197-227 439-469 (1321)
245 1ukz_A Uridylate kinase; trans 97.1 0.00026 8.9E-09 62.1 3.8 37 202-240 15-51 (203)
246 2bbw_A Adenylate kinase 4, AK4 97.1 0.00029 1E-08 64.0 4.2 31 201-231 26-56 (246)
247 2xau_A PRE-mRNA-splicing facto 97.1 0.001 3.5E-08 70.7 8.8 65 161-225 68-132 (773)
248 1q57_A DNA primase/helicase; d 97.1 0.00095 3.3E-08 67.3 8.2 38 198-235 238-279 (503)
249 1nks_A Adenylate kinase; therm 97.1 0.00032 1.1E-08 60.5 4.0 36 204-239 3-41 (194)
250 3sr0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 62.7 3.8 34 205-240 3-36 (206)
251 3ozx_A RNAse L inhibitor; ATP 97.1 0.0014 4.7E-08 66.9 9.1 55 251-318 393-447 (538)
252 2v54_A DTMP kinase, thymidylat 97.1 0.00039 1.3E-08 60.8 4.4 34 201-234 3-37 (204)
253 2fz4_A DNA repair protein RAD2 97.1 0.0013 4.5E-08 59.6 8.0 37 204-240 110-147 (237)
254 1yqt_A RNAse L inhibitor; ATP- 97.1 0.001 3.5E-08 67.9 8.0 52 253-318 168-219 (538)
255 1cke_A CK, MSSA, protein (cyti 97.1 0.00038 1.3E-08 62.0 4.3 35 203-239 6-40 (227)
256 2dzn_B 26S protease regulatory 97.0 3.3E-05 1.1E-09 58.5 -2.5 35 342-376 1-35 (82)
257 4f4c_A Multidrug resistance pr 97.0 0.001 3.4E-08 74.9 8.3 30 197-226 1100-1129(1321)
258 3ozx_A RNAse L inhibitor; ATP 97.0 0.0015 5.1E-08 66.6 8.6 50 254-318 149-198 (538)
259 3nwj_A ATSK2; P loop, shikimat 97.0 0.00029 1E-08 64.7 3.0 31 202-232 48-78 (250)
260 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00021 7E-09 69.0 2.0 29 204-232 26-54 (359)
261 1jjv_A Dephospho-COA kinase; P 97.0 0.00069 2.4E-08 59.5 5.3 33 204-239 4-36 (206)
262 2jaq_A Deoxyguanosine kinase; 97.0 0.00039 1.3E-08 60.6 3.6 29 204-232 2-30 (205)
263 2grj_A Dephospho-COA kinase; T 97.0 0.00081 2.8E-08 59.2 5.6 39 204-244 14-52 (192)
264 2pbr_A DTMP kinase, thymidylat 97.0 0.00053 1.8E-08 59.2 4.4 31 204-234 2-35 (195)
265 1e4v_A Adenylate kinase; trans 97.0 0.00042 1.4E-08 61.5 3.8 30 204-233 2-31 (214)
266 3crm_A TRNA delta(2)-isopenten 97.0 0.00034 1.2E-08 66.6 3.4 33 203-235 6-38 (323)
267 2if2_A Dephospho-COA kinase; a 97.0 0.00085 2.9E-08 58.8 5.7 35 204-241 3-37 (204)
268 3b6e_A Interferon-induced heli 97.0 0.005 1.7E-07 53.7 10.6 23 203-225 49-71 (216)
269 4aby_A DNA repair protein RECN 96.9 0.0031 1.1E-07 61.6 10.0 44 260-318 312-357 (415)
270 2wwf_A Thymidilate kinase, put 96.9 0.00023 7.8E-09 62.7 1.5 29 201-229 9-37 (212)
271 3bgw_A DNAB-like replicative h 96.9 0.0016 5.4E-08 64.9 7.7 38 198-235 193-233 (444)
272 2xb4_A Adenylate kinase; ATP-b 96.9 0.00053 1.8E-08 61.4 3.8 34 204-239 2-35 (223)
273 1nn5_A Similar to deoxythymidy 96.9 0.00028 9.5E-09 62.2 1.7 28 200-227 7-34 (215)
274 2z0h_A DTMP kinase, thymidylat 96.9 0.00073 2.5E-08 58.5 4.3 30 205-234 3-35 (197)
275 3r20_A Cytidylate kinase; stru 96.9 0.00064 2.2E-08 61.8 4.1 35 202-238 9-43 (233)
276 1wb9_A DNA mismatch repair pro 96.9 0.0033 1.1E-07 67.0 10.1 25 201-225 606-630 (800)
277 2qor_A Guanylate kinase; phosp 96.9 0.00066 2.3E-08 59.8 3.9 30 198-227 8-37 (204)
278 3bk7_A ABC transporter ATP-bin 96.8 0.0019 6.6E-08 66.7 7.9 51 254-318 239-289 (607)
279 1kgd_A CASK, peripheral plasma 96.8 0.00065 2.2E-08 58.7 3.6 27 201-227 4-30 (180)
280 2j41_A Guanylate kinase; GMP, 96.8 0.00056 1.9E-08 59.8 3.2 28 199-226 3-30 (207)
281 1w4r_A Thymidine kinase; type 96.8 0.0014 4.8E-08 57.8 5.7 69 202-273 20-103 (195)
282 2gxq_A Heat resistant RNA depe 96.8 0.0065 2.2E-07 52.8 10.0 19 202-220 38-56 (207)
283 3ake_A Cytidylate kinase; CMP 96.8 0.00072 2.5E-08 59.1 3.7 29 204-232 4-32 (208)
284 2plr_A DTMP kinase, probable t 96.8 0.00058 2E-08 59.8 3.1 28 202-229 4-31 (213)
285 3tr0_A Guanylate kinase, GMP k 96.8 0.00068 2.3E-08 59.2 3.6 27 200-226 5-31 (205)
286 2yl4_A ATP-binding cassette SU 96.8 0.0017 5.8E-08 66.9 7.0 30 197-226 365-394 (595)
287 1p9r_A General secretion pathw 96.8 0.0021 7.3E-08 63.4 7.3 92 165-270 144-245 (418)
288 1t6n_A Probable ATP-dependent 96.8 0.02 6.8E-07 50.4 13.0 60 165-225 14-74 (220)
289 2iw3_A Elongation factor 3A; a 96.7 0.0025 8.5E-08 69.1 8.1 48 254-318 559-606 (986)
290 4a1f_A DNAB helicase, replicat 96.7 0.0032 1.1E-07 60.3 8.0 37 198-234 42-81 (338)
291 1uf9_A TT1252 protein; P-loop, 96.7 0.00079 2.7E-08 58.6 3.4 37 202-241 8-44 (203)
292 4e22_A Cytidylate kinase; P-lo 96.7 0.00097 3.3E-08 61.0 4.1 36 201-238 26-61 (252)
293 3a8t_A Adenylate isopentenyltr 96.7 0.00058 2E-08 65.4 2.6 36 202-237 40-75 (339)
294 1g41_A Heat shock protein HSLU 96.7 0.0065 2.2E-07 60.3 10.2 97 247-349 238-346 (444)
295 3bk7_A ABC transporter ATP-bin 96.7 0.0051 1.7E-07 63.6 9.8 52 254-318 482-533 (607)
296 2yvu_A Probable adenylyl-sulfa 96.7 0.0014 4.8E-08 56.6 4.7 39 200-238 11-52 (186)
297 2yhs_A FTSY, cell division pro 96.7 0.0084 2.9E-07 60.2 10.8 28 199-226 290-317 (503)
298 3tau_A Guanylate kinase, GMP k 96.7 0.0011 3.9E-08 58.6 4.1 27 201-227 7-33 (208)
299 3foz_A TRNA delta(2)-isopenten 96.7 0.0008 2.7E-08 63.7 3.2 34 202-235 10-43 (316)
300 1qde_A EIF4A, translation init 96.7 0.014 4.8E-07 51.5 11.3 54 164-218 13-67 (224)
301 2oap_1 GSPE-2, type II secreti 96.7 0.00053 1.8E-08 69.5 2.0 71 201-271 259-343 (511)
302 1rz3_A Hypothetical protein rb 96.7 0.0031 1.1E-07 55.3 6.8 36 200-235 20-58 (201)
303 1vht_A Dephospho-COA kinase; s 96.6 0.0011 3.8E-08 58.8 3.8 35 202-239 4-38 (218)
304 1lvg_A Guanylate kinase, GMP k 96.6 0.00094 3.2E-08 58.7 3.2 26 201-226 3-28 (198)
305 2o8b_B DNA mismatch repair pro 96.6 0.0076 2.6E-07 65.9 11.0 100 202-317 789-912 (1022)
306 1xx6_A Thymidine kinase; NESG, 96.6 0.0039 1.3E-07 54.7 7.2 70 202-273 8-93 (191)
307 2qt1_A Nicotinamide riboside k 96.6 0.00081 2.8E-08 59.2 2.8 30 201-230 20-50 (207)
308 3g5u_A MCG1178, multidrug resi 96.6 0.0041 1.4E-07 69.7 8.9 30 197-226 411-440 (1284)
309 1z6g_A Guanylate kinase; struc 96.6 0.0011 3.8E-08 59.2 3.6 29 198-226 19-47 (218)
310 1m7g_A Adenylylsulfate kinase; 96.6 0.0011 3.7E-08 58.7 3.5 39 200-238 23-65 (211)
311 3j16_B RLI1P; ribosome recycli 96.6 0.0058 2E-07 63.1 9.3 53 253-318 477-529 (608)
312 1uj2_A Uridine-cytidine kinase 96.6 0.0015 5.2E-08 59.5 4.5 38 202-239 22-67 (252)
313 1yqt_A RNAse L inhibitor; ATP- 96.6 0.0063 2.1E-07 62.0 9.4 53 253-318 411-463 (538)
314 1htw_A HI0065; nucleotide-bind 96.6 0.0011 3.8E-08 56.4 3.3 30 197-226 28-57 (158)
315 2h92_A Cytidylate kinase; ross 96.6 0.0016 5.5E-08 57.6 4.3 35 202-238 3-37 (219)
316 1q3t_A Cytidylate kinase; nucl 96.6 0.0015 5E-08 59.0 4.1 38 200-239 14-51 (236)
317 2px0_A Flagellar biosynthesis 96.6 0.0097 3.3E-07 55.8 9.9 35 201-235 104-142 (296)
318 2bdt_A BH3686; alpha-beta prot 96.6 0.0014 4.9E-08 56.6 3.8 34 204-238 4-37 (189)
319 3g5u_A MCG1178, multidrug resi 96.5 0.0064 2.2E-07 68.2 9.7 52 254-320 1182-1233(1284)
320 3c8u_A Fructokinase; YP_612366 96.5 0.0018 6.2E-08 57.1 4.3 28 200-227 20-47 (208)
321 3exa_A TRNA delta(2)-isopenten 96.5 0.0011 3.9E-08 62.8 3.0 34 203-236 4-37 (322)
322 3a00_A Guanylate kinase, GMP k 96.5 0.0014 4.7E-08 56.8 3.4 24 203-226 2-25 (186)
323 1ex7_A Guanylate kinase; subst 96.5 0.0022 7.4E-08 56.2 4.5 24 203-226 2-25 (186)
324 3llm_A ATP-dependent RNA helic 96.5 0.01 3.4E-07 53.3 9.1 22 202-223 76-97 (235)
325 4b3f_X DNA-binding protein smu 96.5 0.013 4.3E-07 61.0 11.0 50 171-235 189-241 (646)
326 3zvl_A Bifunctional polynucleo 96.5 0.0022 7.7E-08 63.1 4.9 36 201-238 257-292 (416)
327 3ux8_A Excinuclease ABC, A sub 96.5 0.0048 1.7E-07 64.4 7.7 43 262-318 565-607 (670)
328 3asz_A Uridine kinase; cytidin 96.4 0.0012 4.3E-08 58.0 2.6 27 201-227 5-31 (211)
329 2v9p_A Replication protein E1; 96.4 0.0017 5.7E-08 61.4 3.6 32 196-227 120-151 (305)
330 1znw_A Guanylate kinase, GMP k 96.4 0.0017 5.7E-08 57.4 3.4 29 199-227 17-45 (207)
331 1vec_A ATP-dependent RNA helic 96.4 0.019 6.4E-07 49.9 10.3 19 202-220 40-58 (206)
332 3ney_A 55 kDa erythrocyte memb 96.4 0.0025 8.7E-08 56.3 4.5 29 199-227 16-44 (197)
333 1ltq_A Polynucleotide kinase; 96.4 0.0014 4.8E-08 61.1 2.9 28 203-230 3-31 (301)
334 3ux8_A Excinuclease ABC, A sub 96.4 0.0051 1.7E-07 64.3 7.3 51 254-318 213-265 (670)
335 1hv8_A Putative ATP-dependent 96.4 0.018 6.2E-07 54.2 10.5 61 165-225 6-67 (367)
336 3d3q_A TRNA delta(2)-isopenten 96.3 0.0016 5.5E-08 62.4 3.0 33 203-235 8-40 (340)
337 1zu4_A FTSY; GTPase, signal re 96.3 0.0055 1.9E-07 58.2 6.5 37 199-235 102-141 (320)
338 3e70_C DPA, signal recognition 96.3 0.0084 2.9E-07 57.2 7.8 27 200-226 127-153 (328)
339 3b9q_A Chloroplast SRP recepto 96.3 0.0022 7.5E-08 60.5 3.7 28 199-226 97-124 (302)
340 2jeo_A Uridine-cytidine kinase 96.3 0.002 6.7E-08 58.5 3.0 31 199-229 22-52 (245)
341 2f6r_A COA synthase, bifunctio 96.3 0.0022 7.5E-08 59.7 3.4 36 202-240 75-110 (281)
342 2va8_A SSO2462, SKI2-type heli 96.2 0.014 4.7E-07 61.2 9.8 58 165-222 8-66 (715)
343 3eph_A TRNA isopentenyltransfe 96.2 0.0017 6E-08 63.5 2.7 33 202-234 2-34 (409)
344 1s96_A Guanylate kinase, GMP k 96.2 0.0024 8.2E-08 57.3 3.4 30 198-227 12-41 (219)
345 2pl3_A Probable ATP-dependent 96.2 0.016 5.5E-07 51.6 8.7 54 164-220 24-80 (236)
346 3lnc_A Guanylate kinase, GMP k 96.2 0.0014 4.7E-08 58.8 1.4 29 198-226 23-52 (231)
347 2axn_A 6-phosphofructo-2-kinas 96.2 0.01 3.4E-07 60.2 7.9 40 202-241 35-77 (520)
348 3fdi_A Uncharacterized protein 96.2 0.0031 1.1E-07 55.7 3.7 28 204-231 8-35 (201)
349 3ice_A Transcription terminati 96.2 0.03 1E-06 54.5 10.8 117 199-317 171-325 (422)
350 2og2_A Putative signal recogni 96.1 0.0028 9.6E-08 61.2 3.6 28 199-226 154-181 (359)
351 2qmh_A HPR kinase/phosphorylas 96.1 0.0024 8.2E-08 56.6 2.8 30 202-232 34-63 (205)
352 2oxc_A Probable ATP-dependent 96.1 0.024 8.3E-07 50.4 9.6 56 163-219 22-78 (230)
353 1ewq_A DNA mismatch repair pro 96.1 0.013 4.4E-07 62.1 8.9 24 202-225 576-599 (765)
354 2iw3_A Elongation factor 3A; a 96.1 0.013 4.5E-07 63.5 8.8 29 198-226 695-723 (986)
355 1j8m_F SRP54, signal recogniti 96.0 0.011 3.7E-07 55.6 7.0 70 202-271 98-190 (297)
356 1ls1_A Signal recognition part 96.0 0.037 1.3E-06 51.7 10.7 70 201-270 97-189 (295)
357 2j37_W Signal recognition part 96.0 0.0086 2.9E-07 60.4 6.4 35 201-235 100-137 (504)
358 2zj8_A DNA helicase, putative 95.9 0.021 7.1E-07 60.0 9.3 22 199-220 36-57 (720)
359 1s2m_A Putative ATP-dependent 95.9 0.042 1.4E-06 52.6 10.8 60 163-223 19-79 (400)
360 1gtv_A TMK, thymidylate kinase 95.9 0.0016 5.6E-08 57.1 0.7 24 204-227 2-25 (214)
361 1odf_A YGR205W, hypothetical 3 95.9 0.0024 8.3E-08 59.8 1.7 28 200-227 29-56 (290)
362 2xxa_A Signal recognition part 95.9 0.011 3.7E-07 58.6 6.4 70 201-270 99-192 (433)
363 2ffh_A Protein (FFH); SRP54, s 95.9 0.024 8.4E-07 55.9 8.9 70 201-270 97-189 (425)
364 4eaq_A DTMP kinase, thymidylat 95.9 0.0043 1.5E-07 55.9 3.2 27 201-227 25-51 (229)
365 2v3c_C SRP54, signal recogniti 95.8 0.013 4.5E-07 57.9 7.0 35 201-235 98-135 (432)
366 2j9r_A Thymidine kinase; TK1, 95.8 0.018 6E-07 51.5 7.0 31 204-234 30-63 (214)
367 3gmt_A Adenylate kinase; ssgci 95.8 0.0056 1.9E-07 55.4 3.8 36 204-241 10-45 (230)
368 3iuy_A Probable ATP-dependent 95.8 0.019 6.6E-07 50.8 7.3 20 201-220 56-75 (228)
369 1x6v_B Bifunctional 3'-phospho 95.7 0.0056 1.9E-07 63.3 3.9 38 201-238 51-91 (630)
370 2orv_A Thymidine kinase; TP4A 95.7 0.034 1.2E-06 50.2 8.7 68 203-273 20-102 (234)
371 2i3b_A HCR-ntpase, human cance 95.7 0.0056 1.9E-07 53.6 3.4 23 204-226 3-25 (189)
372 2qm8_A GTPase/ATPase; G protei 95.7 0.016 5.6E-07 55.3 6.8 28 199-226 52-79 (337)
373 1xti_A Probable ATP-dependent 95.7 0.17 5.8E-06 48.0 14.0 58 166-224 9-67 (391)
374 3tbk_A RIG-I helicase domain; 95.7 0.13 4.3E-06 51.3 13.6 23 203-225 20-42 (555)
375 1sky_E F1-ATPase, F1-ATP synth 95.7 0.017 5.7E-07 57.7 6.9 25 202-226 151-175 (473)
376 2zu0_C Probable ATP-dependent 95.7 0.0038 1.3E-07 57.7 2.2 46 260-319 181-226 (267)
377 3pey_A ATP-dependent RNA helic 95.7 0.08 2.7E-06 50.2 11.5 59 165-223 5-65 (395)
378 1mv5_A LMRA, multidrug resista 95.6 0.0028 9.6E-08 57.7 1.1 29 198-226 24-52 (243)
379 3aez_A Pantothenate kinase; tr 95.6 0.0054 1.9E-07 58.0 3.1 28 199-226 87-114 (312)
380 3dkp_A Probable ATP-dependent 95.6 0.066 2.3E-06 47.8 10.1 18 202-219 66-83 (245)
381 3lxw_A GTPase IMAP family memb 95.6 0.024 8.3E-07 51.4 7.2 24 202-225 21-44 (247)
382 1c9k_A COBU, adenosylcobinamid 95.6 0.0074 2.5E-07 52.5 3.4 32 205-237 2-33 (180)
383 3hdt_A Putative kinase; struct 95.5 0.007 2.4E-07 54.4 3.4 30 203-232 15-44 (223)
384 3vkw_A Replicase large subunit 95.5 0.014 4.7E-07 57.9 5.5 25 201-225 160-184 (446)
385 1a7j_A Phosphoribulokinase; tr 95.5 0.0058 2E-07 57.1 2.7 36 203-238 6-44 (290)
386 1rj9_A FTSY, signal recognitio 95.5 0.0072 2.5E-07 57.0 3.3 26 201-226 101-126 (304)
387 3cr8_A Sulfate adenylyltranfer 95.5 0.016 5.4E-07 59.1 6.0 41 200-240 367-411 (552)
388 1np6_A Molybdopterin-guanine d 95.4 0.0085 2.9E-07 51.7 3.3 26 201-226 5-30 (174)
389 3kta_A Chromosome segregation 95.4 0.0083 2.8E-07 51.3 3.3 24 204-227 28-51 (182)
390 1m8p_A Sulfate adenylyltransfe 95.4 0.025 8.4E-07 58.0 7.2 38 202-239 396-437 (573)
391 3eiq_A Eukaryotic initiation f 95.4 0.058 2E-06 51.7 9.5 54 165-221 40-96 (414)
392 1fuu_A Yeast initiation factor 95.3 0.06 2.1E-06 51.2 9.5 54 164-220 20-76 (394)
393 4i1u_A Dephospho-COA kinase; s 95.3 0.016 5.5E-07 51.6 5.0 38 203-243 10-47 (210)
394 2gza_A Type IV secretion syste 95.3 0.0048 1.6E-07 59.5 1.4 74 198-271 171-262 (361)
395 1sq5_A Pantothenate kinase; P- 95.2 0.016 5.4E-07 54.5 4.9 28 200-227 78-105 (308)
396 2j0s_A ATP-dependent RNA helic 95.2 0.093 3.2E-06 50.4 10.5 58 165-223 37-95 (410)
397 3e2i_A Thymidine kinase; Zn-bi 95.2 0.01 3.5E-07 53.1 3.2 21 204-224 30-51 (219)
398 3b85_A Phosphate starvation-in 95.2 0.0072 2.5E-07 53.7 2.3 25 201-225 21-45 (208)
399 1bif_A 6-phosphofructo-2-kinas 95.2 0.042 1.4E-06 54.7 8.1 36 202-237 39-77 (469)
400 3tqc_A Pantothenate kinase; bi 95.2 0.0093 3.2E-07 56.7 3.1 26 202-227 92-117 (321)
401 3p32_A Probable GTPase RV1496/ 95.2 0.037 1.3E-06 53.1 7.4 25 202-226 79-103 (355)
402 2i4i_A ATP-dependent RNA helic 95.2 0.075 2.6E-06 51.1 9.7 52 164-218 14-68 (417)
403 3fht_A ATP-dependent RNA helic 95.2 0.077 2.6E-06 50.8 9.7 55 165-219 25-81 (412)
404 3q72_A GTP-binding protein RAD 95.2 0.016 5.3E-07 48.1 4.2 21 204-224 4-24 (166)
405 3ly5_A ATP-dependent RNA helic 95.2 0.04 1.4E-06 50.2 7.3 18 203-220 92-109 (262)
406 2p6r_A Afuhel308 helicase; pro 95.2 0.016 5.5E-07 60.7 5.1 22 200-221 38-59 (702)
407 2ged_A SR-beta, signal recogni 95.1 0.022 7.4E-07 48.7 5.1 27 200-226 46-72 (193)
408 2bbs_A Cystic fibrosis transme 95.1 0.0057 1.9E-07 57.3 1.4 29 198-226 60-88 (290)
409 1lw7_A Transcriptional regulat 95.1 0.0092 3.1E-07 57.5 2.8 28 202-229 170-197 (365)
410 2v6i_A RNA helicase; membrane, 95.1 0.077 2.6E-06 52.2 9.6 18 202-219 2-19 (431)
411 2fwr_A DNA repair protein RAD2 95.1 0.043 1.5E-06 54.2 7.7 38 203-240 109-147 (472)
412 2ocp_A DGK, deoxyguanosine kin 95.0 0.012 4.2E-07 52.9 3.3 26 202-227 2-27 (241)
413 1p5z_B DCK, deoxycytidine kina 94.9 0.0058 2E-07 55.9 0.8 27 201-227 23-49 (263)
414 1xjc_A MOBB protein homolog; s 94.9 0.014 4.8E-07 50.2 3.2 24 203-226 5-28 (169)
415 3szr_A Interferon-induced GTP- 94.9 0.031 1.1E-06 57.6 6.4 22 205-226 48-69 (608)
416 1g8f_A Sulfate adenylyltransfe 94.9 0.017 5.6E-07 58.4 4.1 27 202-228 395-421 (511)
417 3tqf_A HPR(Ser) kinase; transf 94.9 0.011 3.7E-07 51.2 2.2 24 202-225 16-39 (181)
418 3fmo_B ATP-dependent RNA helic 94.8 0.06 2.1E-06 50.2 7.6 53 164-219 91-148 (300)
419 2npi_A Protein CLP1; CLP1-PCF1 94.8 0.012 4.1E-07 58.7 2.8 30 197-226 133-162 (460)
420 2f1r_A Molybdopterin-guanine d 94.8 0.0093 3.2E-07 51.3 1.7 25 203-227 3-27 (171)
421 2gk6_A Regulator of nonsense t 94.8 0.023 7.9E-07 58.8 4.9 22 204-225 197-218 (624)
422 2f9l_A RAB11B, member RAS onco 94.8 0.014 5E-07 50.4 2.9 22 204-225 7-28 (199)
423 1oix_A RAS-related protein RAB 94.7 0.014 4.9E-07 50.3 2.7 23 204-226 31-53 (191)
424 3tmk_A Thymidylate kinase; pho 94.7 0.03 1E-06 50.0 4.9 30 201-230 4-33 (216)
425 3sop_A Neuronal-specific septi 94.7 0.013 4.5E-07 54.1 2.5 23 204-226 4-26 (270)
426 1wp9_A ATP-dependent RNA helic 94.6 0.2 6.8E-06 48.5 11.1 36 204-239 25-65 (494)
427 3iev_A GTP-binding protein ERA 94.6 0.054 1.9E-06 50.8 6.7 24 202-225 10-33 (308)
428 2wsm_A Hydrogenase expression/ 94.5 0.017 6E-07 50.7 2.9 25 202-226 30-54 (221)
429 3fmp_B ATP-dependent RNA helic 94.5 0.14 4.7E-06 50.6 9.8 52 165-219 92-148 (479)
430 2dpy_A FLII, flagellum-specifi 94.5 0.028 9.6E-07 55.7 4.7 31 199-229 154-184 (438)
431 3v9p_A DTMP kinase, thymidylat 94.5 0.017 5.9E-07 52.0 2.8 26 201-226 24-49 (227)
432 1nrj_B SR-beta, signal recogni 94.5 0.022 7.5E-07 49.8 3.4 26 201-226 11-36 (218)
433 4edh_A DTMP kinase, thymidylat 94.5 0.018 6.1E-07 51.3 2.8 26 202-227 6-31 (213)
434 2f7s_A C25KG, RAS-related prot 94.4 0.21 7.1E-06 43.4 9.6 22 204-225 27-48 (217)
435 3l9o_A ATP-dependent RNA helic 94.4 0.11 3.9E-06 57.2 9.5 23 202-224 199-221 (1108)
436 2p67_A LAO/AO transport system 94.4 0.071 2.4E-06 50.8 7.0 27 200-226 54-80 (341)
437 2dyk_A GTP-binding protein; GT 94.4 0.022 7.4E-07 46.8 2.9 22 204-225 3-24 (161)
438 3h1t_A Type I site-specific re 94.4 0.084 2.9E-06 53.8 8.0 25 202-226 198-222 (590)
439 4a2p_A RIG-I, retinoic acid in 94.3 0.37 1.3E-05 48.0 12.5 23 203-225 23-45 (556)
440 3pih_A Uvrabc system protein A 94.3 0.054 1.8E-06 58.4 6.5 54 262-336 827-880 (916)
441 2obl_A ESCN; ATPase, hydrolase 94.3 0.028 9.5E-07 53.9 3.9 32 199-230 68-99 (347)
442 1f2t_A RAD50 ABC-ATPase; DNA d 94.3 0.022 7.6E-07 47.6 2.8 24 203-226 24-47 (149)
443 1z2a_A RAS-related protein RAB 94.2 0.023 7.9E-07 46.9 2.9 23 203-225 6-28 (168)
444 3lv8_A DTMP kinase, thymidylat 94.2 0.023 7.9E-07 51.5 3.1 26 201-226 26-51 (236)
445 1w36_D RECD, exodeoxyribonucle 94.2 0.037 1.3E-06 57.1 4.9 24 203-226 165-188 (608)
446 2hf9_A Probable hydrogenase ni 94.2 0.04 1.4E-06 48.5 4.5 25 202-226 38-62 (226)
447 3dz8_A RAS-related protein RAB 94.2 0.23 8E-06 42.1 9.3 23 204-226 25-47 (191)
448 2qag_B Septin-6, protein NEDD5 94.1 0.021 7.1E-07 56.3 2.7 28 198-225 36-65 (427)
449 2zej_A Dardarin, leucine-rich 94.1 0.017 5.8E-07 49.3 1.9 21 204-224 4-24 (184)
450 2ykg_A Probable ATP-dependent 94.1 0.33 1.1E-05 50.3 12.1 22 203-224 29-50 (696)
451 2wji_A Ferrous iron transport 94.1 0.02 7E-07 47.9 2.4 22 204-225 5-26 (165)
452 1kao_A RAP2A; GTP-binding prot 94.1 0.026 8.8E-07 46.4 2.9 22 204-225 5-26 (167)
453 1pui_A ENGB, probable GTP-bind 94.1 0.0089 3E-07 52.0 0.0 29 197-225 21-49 (210)
454 2ce2_X GTPase HRAS; signaling 94.1 0.024 8.1E-07 46.5 2.7 22 204-225 5-26 (166)
455 2p5s_A RAS and EF-hand domain 94.1 0.022 7.7E-07 49.1 2.6 26 200-225 26-51 (199)
456 3o8b_A HCV NS3 protease/helica 94.1 0.41 1.4E-05 49.8 12.4 34 201-234 231-264 (666)
457 2lkc_A Translation initiation 94.1 0.03 1E-06 46.9 3.2 24 201-224 7-30 (178)
458 3lxx_A GTPase IMAP family memb 94.0 0.12 4.2E-06 46.0 7.4 23 203-225 30-52 (239)
459 2wjy_A Regulator of nonsense t 94.0 0.042 1.4E-06 58.6 4.9 22 204-225 373-394 (800)
460 1u8z_A RAS-related protein RAL 94.0 0.028 9.5E-07 46.3 2.9 23 203-225 5-27 (168)
461 1ek0_A Protein (GTP-binding pr 94.0 0.028 9.5E-07 46.5 2.9 22 204-225 5-26 (170)
462 3oiy_A Reverse gyrase helicase 94.0 0.11 3.7E-06 50.2 7.6 21 202-222 36-56 (414)
463 1z0j_A RAB-22, RAS-related pro 94.0 0.029 9.9E-07 46.4 2.9 22 204-225 8-29 (170)
464 2gks_A Bifunctional SAT/APS ki 93.9 0.094 3.2E-06 53.3 7.2 37 202-238 372-411 (546)
465 1qhl_A Protein (cell division 93.9 0.012 4.2E-07 53.0 0.6 22 205-226 30-51 (227)
466 1upt_A ARL1, ADP-ribosylation 93.9 0.03 1E-06 46.5 2.9 25 201-225 6-30 (171)
467 1wms_A RAB-9, RAB9, RAS-relate 93.9 0.03 1E-06 46.8 2.9 22 204-225 9-30 (177)
468 2vp4_A Deoxynucleoside kinase; 93.9 0.017 6E-07 51.6 1.5 26 200-225 18-43 (230)
469 1z08_A RAS-related protein RAB 93.9 0.03 1E-06 46.4 2.9 23 203-225 7-29 (170)
470 2nzj_A GTP-binding protein REM 93.9 0.029 1E-06 46.7 2.8 23 203-225 5-27 (175)
471 1wrb_A DJVLGB; RNA helicase, D 93.8 0.2 6.9E-06 44.9 8.6 18 203-220 61-78 (253)
472 2ygr_A Uvrabc system protein A 93.8 0.19 6.4E-06 54.5 9.6 43 262-318 885-927 (993)
473 2wjg_A FEOB, ferrous iron tran 93.8 0.027 9.3E-07 47.8 2.6 23 203-225 8-30 (188)
474 1ky3_A GTP-binding protein YPT 93.8 0.031 1.1E-06 46.8 2.9 23 203-225 9-31 (182)
475 2erx_A GTP-binding protein DI- 93.8 0.029 9.8E-07 46.5 2.6 22 204-225 5-26 (172)
476 1g16_A RAS-related protein SEC 93.8 0.029 1E-06 46.4 2.7 22 204-225 5-26 (170)
477 3ld9_A DTMP kinase, thymidylat 93.8 0.031 1.1E-06 50.2 2.9 27 202-228 21-47 (223)
478 1svi_A GTP-binding protein YSX 93.8 0.035 1.2E-06 47.3 3.2 25 201-225 22-46 (195)
479 3fho_A ATP-dependent RNA helic 93.8 0.33 1.1E-05 48.5 10.9 19 202-220 158-176 (508)
480 1nij_A Hypothetical protein YJ 93.7 0.044 1.5E-06 51.7 4.1 23 204-226 6-28 (318)
481 4ag6_A VIRB4 ATPase, type IV s 93.7 0.06 2.1E-06 52.1 5.2 93 261-372 262-362 (392)
482 1r2q_A RAS-related protein RAB 93.7 0.034 1.1E-06 45.9 2.9 22 204-225 8-29 (170)
483 1c1y_A RAS-related protein RAP 93.7 0.034 1.2E-06 45.9 2.9 22 204-225 5-26 (167)
484 3def_A T7I23.11 protein; chlor 93.7 0.1 3.6E-06 47.4 6.4 24 202-225 36-59 (262)
485 3i5x_A ATP-dependent RNA helic 93.7 0.43 1.5E-05 48.0 11.6 18 201-218 110-127 (563)
486 2atv_A RERG, RAS-like estrogen 93.6 0.033 1.1E-06 47.9 2.8 24 202-225 28-51 (196)
487 2hxs_A RAB-26, RAS-related pro 93.6 0.035 1.2E-06 46.4 2.9 23 203-225 7-29 (178)
488 1r8s_A ADP-ribosylation factor 93.6 0.036 1.2E-06 45.7 2.9 22 204-225 2-23 (164)
489 3bc1_A RAS-related protein RAB 93.6 0.035 1.2E-06 46.9 2.9 23 203-225 12-34 (195)
490 3q85_A GTP-binding protein REM 93.6 0.035 1.2E-06 46.0 2.7 21 204-224 4-24 (169)
491 4tmk_A Protein (thymidylate ki 93.5 0.038 1.3E-06 49.2 3.1 25 202-226 3-27 (213)
492 2gj8_A MNME, tRNA modification 93.5 0.027 9.3E-07 47.6 2.0 23 203-225 5-27 (172)
493 3euj_A Chromosome partition pr 93.5 0.032 1.1E-06 55.9 2.8 28 198-226 26-53 (483)
494 2b6h_A ADP-ribosylation factor 93.5 0.038 1.3E-06 47.5 3.0 25 200-224 27-51 (192)
495 1z0f_A RAB14, member RAS oncog 93.5 0.039 1.3E-06 46.0 2.9 23 203-225 16-38 (179)
496 4dsu_A GTPase KRAS, isoform 2B 93.5 0.039 1.3E-06 46.5 2.9 22 204-225 6-27 (189)
497 2y8e_A RAB-protein 6, GH09086P 93.5 0.036 1.2E-06 46.3 2.7 23 203-225 15-37 (179)
498 2fn4_A P23, RAS-related protei 93.4 0.038 1.3E-06 46.2 2.7 23 203-225 10-32 (181)
499 3clv_A RAB5 protein, putative; 93.4 0.04 1.4E-06 46.9 2.9 24 202-225 7-30 (208)
500 2vf7_A UVRA2, excinuclease ABC 93.4 0.09 3.1E-06 56.2 6.2 54 262-336 752-805 (842)
No 1
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-79 Score=606.84 Aligned_cols=366 Identities=74% Similarity=1.241 Sum_probs=312.3
Q ss_pred ccCCCCCCChhhHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeee
Q 017161 11 DEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVAR 90 (376)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (376)
+++++.+|+|.|+.++|.|+.++|...|+++|++|+.+.++++.++|++++|+|+|||++|++..+.+.+.++.|++|++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (467)
T 4b4t_H 22 DDDKIVPLTEGDIQVLKSYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSHLWDIMGDRQRLGEEHPLQVAR 101 (467)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----------------CCSSSEE
T ss_pred ccccCCCCCHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccccchhchHHhccccchhHhh
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCC------------------------------CCCCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccc
Q 017161 91 CTKIISPN------------------------------SEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKY 140 (376)
Q Consensus 91 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~ 140 (376)
|.+++..+ .++.+++|+++++++|+|++++.+++.+|+||++|++++.++
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~ 181 (467)
T 4b4t_H 102 CTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKY 181 (467)
T ss_dssp EEECCCC--------------------------------CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSC
T ss_pred hHhHhccccccccccccccccccccccccccCccccccCCCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcc
Confidence 99998532 136789999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHH
Q 017161 141 QIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220 (376)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~Lak 220 (376)
.++..||..+||.+..|.+++.|+++|+||||+++++++|++.|.+|+.+|++|.++|+++|+|+|||||||||||++|+
T Consensus 182 ~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 182 NIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHH
T ss_pred eeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 017161 221 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (376)
Q Consensus 221 alA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 300 (376)
|+|++++.+|+.++++++.++|+|++++.++.+|..|+..+||||||||+|++++.|.+...+.+....+++.++|++|+
T Consensus 262 AiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 262 AVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp HHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred HHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999988777778889999999999999
Q ss_pred CCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 301 GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 301 ~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
++....+++||+|||+++.|||||+||||||+.|+|++|+.++|.+||+.|++++.+..++|++.||++|+|||||
T Consensus 342 g~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGA 417 (467)
T 4b4t_H 342 GFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGA 417 (467)
T ss_dssp SSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHH
T ss_pred ccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-67 Score=518.07 Aligned_cols=335 Identities=46% Similarity=0.774 Sum_probs=312.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccc
Q 017161 33 PYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIA 112 (376)
Q Consensus 33 ~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (376)
+|..+|+++|.++++..+++++|...++. .+..++...+.....++.|+.||++.+.++++ +++|+.+.++
T Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~----~~iv~~~~~~ 92 (405)
T 4b4t_J 22 YFEQKIQETELKIRSKTENVRRLEAQRNA-----LNDKVRFIKDELRLLQEPGSYVGEVIKIVSDK----KVLVKVQPEG 92 (405)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCEEEEEEEEECTTS----CEEEEESSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCCceEEEEEEEecCC----eEEEEeCCCC
Confidence 56788999999888888888877643322 22445566666677789999999999999764 6999999999
Q ss_pred eEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchh
Q 017161 113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPE 192 (376)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~ 192 (376)
+|+|++...++...+++|++|++++.++.++..||...+|.+..+.+++.|+++|+||||+++++++|+++|.+|+.||+
T Consensus 93 ~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe 172 (405)
T 4b4t_J 93 KYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPE 172 (405)
T ss_dssp EEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHH
T ss_pred EEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcc
Q 017161 193 KFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272 (376)
Q Consensus 193 ~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~ 272 (376)
+|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+
T Consensus 173 ~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 173 LFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp HHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSC
T ss_pred HHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
+++.|.....+++.+..+++.+||++|||+....+++||+|||+|+.|||||+||||||+.|+|++||.++|.+||+.|+
T Consensus 253 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS 332 (405)
T ss_dssp CTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred hccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh
Confidence 99999887777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHHHCCCCCCC
Q 017161 353 RTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 353 ~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+++++..++|++.||+.|+|||||
T Consensus 333 ~~~~l~~dvdl~~lA~~t~G~SGA 356 (405)
T 4b4t_J 333 RKMNLTRGINLRKVAEKMNGCSGA 356 (405)
T ss_dssp TTSBCCSSCCHHHHHHHCCSCCHH
T ss_pred cCCCCCccCCHHHHHHHCCCCCHH
Confidence 999999999999999999999997
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-64 Score=495.45 Aligned_cols=295 Identities=44% Similarity=0.788 Sum_probs=285.4
Q ss_pred HHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCccccc
Q 017161 78 QMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMM 157 (376)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~ 157 (376)
....++.|+.||++.+++++ ++++|+.+.+++|+|++.+.+++..++||++|++++.++.+...||...||.+..|
T Consensus 96 ~~~~~~~p~~~g~~~~~~~~----~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~ 171 (437)
T 4b4t_I 96 LEEIRGNPLSIGTLEEIIDD----DHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVM 171 (437)
T ss_dssp HHHHHCSSEEEEEEEEECTT----SEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCC
T ss_pred HHhhcCCCceeEEEEEEecC----CEEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceee
Confidence 44446899999999999987 46999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
.+++.|+++|+||||+++++++|++.|.+|+.||+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+.++|+|++++.++.+|..|+..+||||||||+|++++.|...+.+++.+..+++.++|+++|++....+++||+|||++
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999999998877777889999999999999999999999999999999
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 318 ~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+.|||||+||||||+.|+|++||.++|.+||+.|++++++..++|++.||+.|+|||||
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGA 390 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGA 390 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHH
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999997
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-63 Score=493.71 Aligned_cols=338 Identities=42% Similarity=0.727 Sum_probs=301.9
Q ss_pred hhHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCC
Q 017161 21 DDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSE 100 (376)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (376)
....++..|... ..+.+++|.+++.++.+++.|. ++ .....+.....++.|+.||++.+.+++
T Consensus 52 ~~~~~~~~~~~~--l~~~~~~e~~~~~~~~~~~~l~--~~----------~~~~~~~~~~l~~~~~~vg~~~~~~~~--- 114 (437)
T 4b4t_L 52 AHNKALNQFKRK--LLEHRRYDDQLKQRRQNIRDLE--KL----------YDKTENDIKALQSIGQLIGEVMKELSE--- 114 (437)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHH--HH----------HHHHHHHHHHHHSCCEEEEEEEECSSS---
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HH----------HHHHHHHHHHhccCCceeeeheeeecC---
Confidence 333444444432 1234577888888888877776 22 222333445557899999999999876
Q ss_pred CCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHH
Q 017161 101 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKM 180 (376)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l 180 (376)
++++|+.+.+++|+|++...+....+++|++|+++..++.+...||...+|.+..|.+.+.|+++|+||||+++++++|
T Consensus 115 -~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l 193 (437)
T 4b4t_L 115 -EKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIREL 193 (437)
T ss_dssp -SCEEEEETTSCEEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHH
T ss_pred -CcEEEEECCCCEEEEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcC
Q 017161 181 REVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSK 260 (376)
Q Consensus 181 ~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~ 260 (376)
+++|.+|+.||++|.++|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.++|+|++++.++.+|..|+..
T Consensus 194 ~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 194 REVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEH 273 (437)
T ss_dssp HHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCC
Q 017161 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPD 340 (376)
Q Consensus 261 ~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd 340 (376)
+||||||||+|++++.|...+.+.+....+++.+||++|+|+...++++||+|||+|+.|||||+||||||+.|+|++||
T Consensus 274 ~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd 353 (437)
T 4b4t_L 274 EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353 (437)
T ss_dssp CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCC
T ss_pred CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcC
Confidence 99999999999999999877777788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 341 LESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 341 ~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
.++|.+||+.|++++.+..++|++.||+.|+|||||
T Consensus 354 ~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGA 389 (437)
T 4b4t_L 354 EAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGA 389 (437)
T ss_dssp HHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHH
T ss_pred HHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHH
Confidence 999999999999999999999999999999999996
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-63 Score=491.66 Aligned_cols=306 Identities=46% Similarity=0.741 Sum_probs=287.7
Q ss_pred chhhhhHHHhhhcCCceeeeeeeecCCCC----------------------CCCeEEEeecccceEEEecCCCCCCCCCC
Q 017161 71 WDLVSDKQMMQEEQPLQVARCTKIISPNS----------------------EDAKYVINVKQIAKFVVGLGDKVSPTDIE 128 (376)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (376)
++...+.....++.|+.||++.++++.+. ..+.++|+.+.+..|+|.....++...++
T Consensus 62 ~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~ 141 (434)
T 4b4t_M 62 IKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLK 141 (434)
T ss_dssp HHHHHHHHHHHCSSSCCEEEECCC---------------------------CCSEEEEEETTSCEEEEECCSSSCTTTSC
T ss_pred HHHHHHHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhhhhhhhhcccCceEEEEcCCCCeEEEecccccCHhHCC
Confidence 44555666677889999999999886431 13568899999999999999999999999
Q ss_pred CCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeee
Q 017161 129 EGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCY 208 (376)
Q Consensus 129 ~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~ 208 (376)
||++|+++..++.+...||...||.+..|.+++.|+++|+||+|+++++++|++.|.+|+.||++|.++|+++|+|+|||
T Consensus 142 ~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLy 221 (434)
T 4b4t_M 142 PNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMY 221 (434)
T ss_dssp SSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEE
T ss_pred CCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHH
Q 017161 209 GPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (376)
Q Consensus 209 GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~ 288 (376)
||||||||++|+|+|++++.+|+.++++++.++|+|++++.++.+|..|+..+||||||||+|++++.|.+...+++...
T Consensus 222 GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~ 301 (434)
T 4b4t_M 222 GPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREV 301 (434)
T ss_dssp SCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHH
T ss_pred CcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777778899
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHH
Q 017161 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLAR 368 (376)
Q Consensus 289 ~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~ 368 (376)
.+++.+||++++++....+|+||+|||+|+.|||||+||||||+.|+|++|+.++|.+||+.|++++.+..++|++.||+
T Consensus 302 ~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~ 381 (434)
T 4b4t_M 302 QRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR 381 (434)
T ss_dssp HHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCC
Q 017161 369 LCPNSTGN 376 (376)
Q Consensus 369 ~t~g~sGa 376 (376)
.|+|||||
T Consensus 382 ~t~G~sGA 389 (434)
T 4b4t_M 382 STDEFNGA 389 (434)
T ss_dssp HCSSCCHH
T ss_pred hCCCCCHH
Confidence 99999997
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-62 Score=483.21 Aligned_cols=335 Identities=41% Similarity=0.665 Sum_probs=303.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccc
Q 017161 33 PYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIA 112 (376)
Q Consensus 33 ~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (376)
.+..++++++.++..+..+.+.+. .+.. .....+....++.+..++.|+.||++.+.+++ ++++|+...+.
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~--~~~~---~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~----~~~iv~~~~~~ 116 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIK--DEQR---HLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQ----NTGIVSSTTGM 116 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHTCSCEEEEEEEEEEET----TEEEEEETTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHcCCCceeeEEEEEccC----CeeEEecCCCC
Confidence 445677777777766666655443 1110 00022334455555567899999999999976 46999999999
Q ss_pred eEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchh
Q 017161 113 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPE 192 (376)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~ 192 (376)
+|+|++...++...+++|++|++++.++.+...||...++.+..|.+++.|+++|+||||+++++++|++.+.+|+.+|+
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~ 196 (428)
T 4b4t_K 117 SYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQAD 196 (428)
T ss_dssp EEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHH
T ss_pred EEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcc
Q 017161 193 KFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDA 272 (376)
Q Consensus 193 ~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~ 272 (376)
.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++++++.++|+|++++.++.+|..|+..+||||||||+|+
T Consensus 197 ~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 197 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp HHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred HHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEec-CCCHHHHHHHHHHH
Q 017161 273 IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFG-LPDLESRTQIFKIH 351 (376)
Q Consensus 273 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~-~Pd~~~r~~Il~~~ 351 (376)
+++.|.+...+++.+..+++.+||++++|+....+++||+|||+++.|||||+||||||+.|+|| +|+.++|..||+.|
T Consensus 277 i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~ 356 (428)
T 4b4t_K 277 IATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI 356 (428)
T ss_dssp HHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHH
T ss_pred hhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 99999887777788899999999999999999999999999999999999999999999999996 89999999999999
Q ss_pred hccCCCCCcccHHHHHHHCCCCCCC
Q 017161 352 TRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 352 ~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
++++++..++|++.||..|+|||||
T Consensus 357 ~~~~~l~~~~dl~~lA~~t~G~sga 381 (428)
T 4b4t_K 357 ASKMSLAPEADLDSLIIRNDSLSGA 381 (428)
T ss_dssp HHSSCBCTTCCHHHHHHHTTTCCHH
T ss_pred hcCCCCCcccCHHHHHHHCCCCCHH
Confidence 9999999999999999999999997
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.1e-45 Score=389.39 Aligned_cols=225 Identities=43% Similarity=0.770 Sum_probs=179.1
Q ss_pred CcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceE
Q 017161 152 PSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (376)
Q Consensus 152 ~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i 231 (376)
|+.......+.|+++|++|+|+++++++|++.+.+|+.+|+.|.++|+.+++++|||||||||||++|+++|++++.+|+
T Consensus 461 ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~ 540 (806)
T 3cf2_A 461 PSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEE
T ss_pred CcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceE
Confidence 44444445678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 017161 232 RVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (376)
Q Consensus 232 ~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI 311 (376)
.+++++++++|+|++++.++.+|..|+..+||||||||||++++.|+....+.+....+++.+||.+|||+....+|+||
T Consensus 541 ~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi 620 (806)
T 3cf2_A 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp ECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEE
T ss_pred EeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999986554444556678899999999999999999999
Q ss_pred EEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 312 MATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 312 ~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+|||+|+.||+|++||||||+.|+|++|+.++|.+||+.+++++.+..++|++.||+.|+|||||
T Consensus 621 ~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGa 685 (806)
T 3cf2_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 685 (806)
T ss_dssp CC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------
T ss_pred EeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.4e-43 Score=371.62 Aligned_cols=214 Identities=42% Similarity=0.770 Sum_probs=202.1
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
...|.++|+||+|+++++++|++++.+|+.||++|..+|+++|+|+|||||||||||+||+++|++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 240 QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 240 ~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
++|.|+++..++.+|..|+.++||||||||||+++++|.+... ....+.+.+|+..|+++....+|+||+|||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~---~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC---TTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCC---hHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999998865432 2335677788888999888889999999999999
Q ss_pred CCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 320 LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 320 ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
||++|+||||||+.|+++.|+.++|.+||+.|++++.+..++|+..||..|+||+||
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHH
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999986
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.4e-38 Score=302.68 Aligned_cols=218 Identities=43% Similarity=0.784 Sum_probs=196.3
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
+.+.|+++|++|+|++++++.|++++..|+.+|+.|.++|+.+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 239 ~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
...++|+....++.+|..+....|+||||||+|.+...+............+.+.+++..++++....+++||+|||+++
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999999876643221111122345566777777777778899999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 319 ~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
.+|++++|+|||+..+++++|+.++|.+|++.+++..++..+++++.+|..|.||+|+
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 223 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHH
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999998888889999999999999985
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=291.59 Aligned_cols=213 Identities=41% Similarity=0.709 Sum_probs=180.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
+.|+++|+||+|+++++++|++.+.+|+.+++.|..+++..++|++|+||||||||+|++++|+.++..++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 241 ~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
.+.++..+.++.+|+.++...|+++|+||+|.++..+.... .....+.+.+++.+|+|......++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 88999999999999999889999999999999987653321 112235567888899988888889999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhcc---CCCCCcccHHHHHHHC--CCCCCC
Q 017161 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT---MNCERDIRFELLARLC--PNSTGN 376 (376)
Q Consensus 321 d~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~---~~~~~~vdl~~lA~~t--~g~sGa 376 (376)
|++++||||||+.|++++|+.++|.+||+.+++. ..+..+++++.||..| +|||||
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sga 220 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGA 220 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHH
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHH
Confidence 9999999999999999999999999999999854 3456789999999975 599996
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.5e-36 Score=306.33 Aligned_cols=214 Identities=47% Similarity=0.821 Sum_probs=194.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
.+.++|+||+|++++++++++.+.. +.++..|..+|...|+++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5678999999999999999999876 788999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 242 ~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
+.|.+...++.+|..|....||||||||+|.++..|.....+++.+..+++.+|+..++++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999988765445566777788999999999887778999999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 322 ~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
++++|||||++.+.+++|+.++|.+|++.+++..++..++++..||..|+||+||
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sga 223 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGA 223 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHH
Confidence 9999999999999999999999999999999999888889999999999999974
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.8e-36 Score=283.20 Aligned_cols=222 Identities=55% Similarity=0.994 Sum_probs=208.6
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
..+.+...|+++|++|+|++++++.|++++..++.+++.|..+|+.++.++||+||||||||++|+++|+.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 4 KAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp -CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred ccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 017161 235 GSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (376)
Q Consensus 235 ~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT 314 (376)
++++...+.|.....++.+|..+....|+||||||+|.+.+.+.+...+++.+.++.+..+++.++++....+++||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 163 (285)
T 3h4m_A 84 GSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 163 (285)
T ss_dssp GGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred hHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999998887766666788999999999999988888899999999
Q ss_pred CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 315 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 315 n~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|.++.++++++|++||+..+.++.|+.++|.+|++.+++...+..++++..++..+.||+|+
T Consensus 164 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 164 NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGA 225 (285)
T ss_dssp SCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHH
T ss_pred CCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999999999888889999999999999873
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-36 Score=289.59 Aligned_cols=212 Identities=36% Similarity=0.647 Sum_probs=192.1
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-CCceEEEechh
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSE 237 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-~~~~i~v~~~e 237 (376)
+.+.|+++|+||+|++++++.|++++.+|+.+|++|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 34678999999999999999999999999999999985 46788999999999999999999999999 89999999999
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCC
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATNR 316 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~VI~tTn~ 316 (376)
+..++.|+.+..++.+|..++..+|+||||||+|.+++.+... ......+.+.+++..++++. ...+++||+|||+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999877543 23445677788899998875 3678999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCCC
Q 017161 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGN 376 (376)
Q Consensus 317 ~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~sGa 376 (376)
++.+|++++| ||+..+++++|+.++|.+||+.+++..+.. .+.++..||+.|+||+||
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sga 217 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGA 217 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHH
Confidence 9999999999 999999999999999999999999887654 678999999999999985
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3.1e-35 Score=274.07 Aligned_cols=219 Identities=46% Similarity=0.793 Sum_probs=194.8
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEech
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~ 236 (376)
++.++.++.+|++|+|++.+++.+++.+.. +.++..|..+|...+++++|+||||||||++|+++|+.++.+++.++++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~ 79 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSC
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHH
Confidence 356778899999999999999999998876 7888999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 237 el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
++...+.|.....++.+|+.+....|+++||||+|.+...+.....++..+..+.+.+++..++++....+++||+|||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 80 DFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR 159 (257)
T ss_dssp SSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC
Confidence 99988899999999999999999999999999999998877554444455566778889999998877788999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 317 ~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
++.++++++|+|||++.+.++.|+.++|.+|++.+++.+.+..++++..+|..++||+++
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGA 219 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHH
Confidence 999999999999999999999999999999999999998888889999999999999864
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.8e-35 Score=283.95 Aligned_cols=214 Identities=37% Similarity=0.656 Sum_probs=188.2
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEech
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~ 236 (376)
.++.+.|+++|++|+|++++++.|++++.+|+.+|+.|.. +..+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 4567899999999999999999999999999999999987 567889999999999999999999999999999999999
Q ss_pred hhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC-CCCCeEEEEEeC
Q 017161 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATN 315 (376)
Q Consensus 237 el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~VI~tTn 315 (376)
++...+.|+....++.+|..++...|+||||||||.+.+.+........ .+...+++..++++. ...+++||+|||
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~---~~~~~~ll~~l~~~~~~~~~v~vi~atn 162 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEAS---RRIKTELLVQMNGVGNDSQGVLVLGATN 162 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCT---HHHHHHHHHHHGGGGTSCCCEEEEEEES
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHH---HHHHHHHHHHhccccccCCceEEEEecC
Confidence 9999999999999999999999999999999999999887754433333 344456666676663 466899999999
Q ss_pred CCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCCC
Q 017161 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGN 376 (376)
Q Consensus 316 ~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~sGa 376 (376)
+++.||++++| ||+..+++++|+.++|.+||+.+++..... .+.++..||+.|.||+||
T Consensus 163 ~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~ 222 (322)
T 3eie_A 163 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGS 222 (322)
T ss_dssp CGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHH
T ss_pred ChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHH
Confidence 99999999999 999999999999999999999999987754 667899999999999985
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.6e-34 Score=282.49 Aligned_cols=217 Identities=36% Similarity=0.634 Sum_probs=179.3
Q ss_pred ccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEE
Q 017161 154 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (376)
Q Consensus 154 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v 233 (376)
+......+.|+++|++|+|++++++.|++++.+|+.+|+.|.. +..+++++|||||||||||++|+++|++++.+|+.+
T Consensus 37 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 37 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp ----------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred HhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3344566788999999999999999999999999999999987 668889999999999999999999999999999999
Q ss_pred echhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC-CCCeEEEE
Q 017161 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLM 312 (376)
Q Consensus 234 ~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~v~VI~ 312 (376)
+++++...+.|+....++.+|..++...|+||||||+|.+.+.+.... .....+...+++..++++.. ..+++||+
T Consensus 116 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~v~vI~ 192 (355)
T 2qp9_X 116 SSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE---SEASRRIKTELLVQMNGVGNDSQGVLVLG 192 (355)
T ss_dssp EHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEE
T ss_pred eHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc---chHHHHHHHHHHHHhhcccccCCCeEEEe
Confidence 999999999999999999999999999999999999999988764432 23344555667777776643 56799999
Q ss_pred EeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCCC
Q 017161 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGN 376 (376)
Q Consensus 313 tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~sGa 376 (376)
|||+++.++++++| ||+..+++++|+.++|.+||+.+++..+.. .+.+++.||+.|+||+||
T Consensus 193 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~ 255 (355)
T 2qp9_X 193 ATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGS 255 (355)
T ss_dssp EESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHH
T ss_pred ecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHH
Confidence 99999999999999 999999999999999999999999887653 578899999999999985
No 17
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=7.8e-34 Score=288.18 Aligned_cols=212 Identities=42% Similarity=0.777 Sum_probs=194.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
.++++|++|+|++.+++.|++++..++.+|+.|..+|..++.++|||||||||||++|+++|++++.+|+.++++++...
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 242 YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 242 ~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
+.|+....++.+|..|....|++|||||||.+.+.+.... .....+.+.+|+..+++.....+++||+|||+++.|+
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~---~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC---CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc---chHHHHHHHHHHHHhhccccCCceEEEEecCCccccC
Confidence 9999999999999999999999999999999998774432 3333455556666666666778899999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 322 ~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
++++++|||+..++|++|+.++|.+||+.+++.+.+..++++..+|..+.||+|+
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~ 409 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHH
Confidence 9999999999999999999999999999999999988889999999999999874
No 18
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=5.7e-34 Score=289.05 Aligned_cols=213 Identities=46% Similarity=0.804 Sum_probs=196.7
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhh
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~ 242 (376)
++++|+||+|+++++.++++.+.. +.++..|..+++..+++++|+||||||||+||+++|+.++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999999876 7788999999999999999999999999999999999999999999999999888
Q ss_pred hchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCc
Q 017161 243 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP 322 (376)
Q Consensus 243 ~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~ 322 (376)
.|.....++.+|+.+....|+|+||||||.++..+.....+...+..+++.+++..++++.....+++|++||+|+.||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99888889999999988889999999999998877543334467778889999999999887788999999999999999
Q ss_pred cccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 323 ALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 323 allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+++|||||++.+.+++|+.++|.+||+.+++.+.+..++++..||..|+||+||
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~ga 238 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 238 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHH
Confidence 999999999999999999999999999999998888899999999999999974
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=262.15 Aligned_cols=213 Identities=40% Similarity=0.684 Sum_probs=174.1
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhh
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~ 242 (376)
|+++|++|+|++++++.|++.+.. +.+++.|..+|+..++++|||||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 567999999999999999999876 7889999999999999999999999999999999999999999999999998888
Q ss_pred hchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 243 VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV-GGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 243 ~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~-~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
.+.+...++.+|..+....|+||||||+|.+...+..... ..+.+.+..+..++..++++....+++||+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 8888889999999999999999999999999876643221 123455677888999888877778899999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCccc--HHHHHHHCCCCCCC
Q 017161 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIR--FELLARLCPNSTGN 376 (376)
Q Consensus 322 ~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vd--l~~lA~~t~g~sGa 376 (376)
++++|+|||+..+++++|+.++|.+|++.+++..++..+.+ +..++..+.||+|+
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 216 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGA 216 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHH
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHH
Confidence 99999999999999999999999999999999887765443 47899999999873
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=9.2e-34 Score=285.02 Aligned_cols=216 Identities=35% Similarity=0.629 Sum_probs=182.3
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-CCceEEE
Q 017161 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-DACFIRV 233 (376)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-~~~~i~v 233 (376)
......+.|+++|++|+|++++++.|++++.+|+.+|++|.. +..+++++|||||||||||++|+++|+++ +.+|+.+
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 334456788999999999999999999999999999999875 35678999999999999999999999999 8999999
Q ss_pred echhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC-CCCCeEEEE
Q 017161 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLM 312 (376)
Q Consensus 234 ~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~VI~ 312 (376)
+++++...+.|.....++.+|..++...|+||||||||.+++.+.... .....+.+.+++..++++. ...+++||+
T Consensus 200 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 200 SSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp CCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC---CGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred eHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc---ccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 999999999999999999999999999999999999999988775432 3334566778888888875 357899999
Q ss_pred EeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCCC
Q 017161 313 ATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGN 376 (376)
Q Consensus 313 tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~sGa 376 (376)
|||+++.+|++++| ||+..+.+++|+.++|..||+.+++..+.. .+.+++.||+.|+||+||
T Consensus 277 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sga 339 (444)
T 2zan_A 277 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGA 339 (444)
T ss_dssp EESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHH
T ss_pred cCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHH
Confidence 99999999999999 999999999999999999999999887653 568999999999999985
No 21
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.1e-32 Score=256.44 Aligned_cols=217 Identities=45% Similarity=0.796 Sum_probs=190.1
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
..+.|..+|++++|+++++.++++.+.. +.++..+..+++..++|++|+||||||||+|++++|+.++..++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4567889999999999999999998875 677888999999999999999999999999999999999999999999999
Q ss_pred hHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 239 ~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
...+.+.....++.+|+.+....|+++|+||+|.++..+.........+..+.+.+++..+++......++++++||.|+
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch
Confidence 88888888888899999998888999999999999876643222345666778889999999887777789999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 319 ~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
.+|++++|+|||++.++++.|+.++|.+||+.+++.+.+..++++..||..++||+||
T Consensus 166 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~ 223 (254)
T 1ixz_A 166 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 223 (254)
T ss_dssp GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999988888889999999999999974
No 22
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.98 E-value=9.3e-35 Score=311.32 Aligned_cols=219 Identities=43% Similarity=0.784 Sum_probs=195.0
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
...+.+.++|++++|++++++.|.+++.+|+.+++.|..+++.++.++||+||||||||+||+++|+.++.+|+.+++++
T Consensus 467 ~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 546 (806)
T 1ypw_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred hcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+..+|+|+.+..++.+|+.++...||||||||||.++..|.......+....+.+.+|+..|+++....+++||+|||++
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~ 626 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 626 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSC
T ss_pred hhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCc
Confidence 99999999999999999999999999999999999998875433333345677888999999998888899999999999
Q ss_pred CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 318 DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 318 ~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+.||++++|||||+..|+|++|+.++|.+||+.+++...+..+++++.||+.|.|||||
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sga 685 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 685 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCH
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHH
Confidence 99999999999999999999999999999999999999888899999999999999985
No 23
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.98 E-value=3.1e-31 Score=250.23 Aligned_cols=217 Identities=45% Similarity=0.796 Sum_probs=190.2
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
+...|+++|++++|+++++.++++.+.. +.++..+..+++..+++++|+||||||||+|++++|+.++..++.+++.++
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 3445889999999999999999998865 667888999999999999999999999999999999999999999999998
Q ss_pred hHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 239 ~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
...+.+.....++.+|+.+....|+++|+||+|.++..+.........+..+.+.+++.++++......++++++||.|+
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD 189 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTT
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCch
Confidence 88888888888899999998888999999999999776543222235566788889999999887777789999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 319 ~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
.+|++++|++||++.++++.|+.++|.+||+.+++...+..++++..+|..++||+|+
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~ 247 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 247 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999988888889999999999999863
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=1.5e-31 Score=254.04 Aligned_cols=217 Identities=35% Similarity=0.580 Sum_probs=179.8
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEech
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~ 236 (376)
.++.+.++.+|++|+|++++++.|++++..|+.+|++|..++ .+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 88 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA 88 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEEST
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHH
Confidence 455677899999999999999999999999999999988765 5678999999999999999999999999999999999
Q ss_pred hhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 237 el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
++...+.|.....++.+|..+....|+||||||+|.+...+...........+..++..++.........+++||++||+
T Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 89 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp TTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred HHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 99999999999999999999999999999999999998876443323334444444444333322122357999999999
Q ss_pred CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCCC
Q 017161 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGN 376 (376)
Q Consensus 317 ~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~sGa 376 (376)
++.+++++++ ||+..+++++|+.++|..|++.+++..+.. .+.++..|++.+.||+|+
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGS 227 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHH
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHH
Confidence 9999999999 999999999999999999999999876643 456789999999999973
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=1.2e-33 Score=264.56 Aligned_cols=215 Identities=42% Similarity=0.779 Sum_probs=183.4
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
+.|+.+|++|+|++++++.+++++.. +.+++.|..++...++++||+||||||||++|+++|++++.+++.++++.+..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46778999999999999999998875 88999999999999999999999999999999999999999999999999988
Q ss_pred hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCC-CCCCHHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCCCC
Q 017161 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG-VGGDNEVQRTMLEIVNQLDGFDA-RGNIKVLMATNRPD 318 (376)
Q Consensus 241 ~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~ld~~~~-~~~v~VI~tTn~~~ 318 (376)
.+.|.+...++.+|..+....|+||||||+|.+...+.... ...+....+.+.+++..++++.. ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 88888877788899999988999999999999977653211 11112223345567777776643 34589999999999
Q ss_pred CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 319 TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 319 ~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
.+|++++|+|||+..+.|+.|+.++|.+||+.+++.+.+..+++++.|++.+.||+|+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~ 220 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGA 220 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHH
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999998888888899999999999873
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=257.50 Aligned_cols=213 Identities=35% Similarity=0.624 Sum_probs=184.1
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
.....++.+|++|+|++.+++.|++++..|+.+++.|...+ .+++++||+||||||||++|+++|+.++.+|+.+++++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 45678899999999999999999999999999999887765 67889999999999999999999999999999999999
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC--CCCCeEEEEEeC
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD--ARGNIKVLMATN 315 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~--~~~~v~VI~tTn 315 (376)
+...+.|+....++.+|..+....|+||||||||.+.+.+... .+....+.+.+++..+++.. ...+++||+|||
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999998766332 23344566667777777654 346799999999
Q ss_pred CCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCCC
Q 017161 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTGN 376 (376)
Q Consensus 316 ~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~sGa 376 (376)
+++.++++++| ||+..+++++|+.++|.+|++.+++..+.. .+.++..|++.+.||+|+
T Consensus 230 ~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~ 289 (357)
T 3d8b_A 230 RPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGA 289 (357)
T ss_dssp CGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHH
T ss_pred ChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHH
Confidence 99999999999 999999999999999999999999776543 456789999999999974
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=255.81 Aligned_cols=218 Identities=34% Similarity=0.583 Sum_probs=175.8
Q ss_pred CcccccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceE
Q 017161 152 PSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (376)
Q Consensus 152 ~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i 231 (376)
..+...++...++++|++|+|++.+++.|.+++..++.+++.|..++ .+++++|||||||||||++|+++|++++.+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 99 NLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp TTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 34445577788999999999999999999999999999999998877 55789999999999999999999999999999
Q ss_pred EEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC--CCCeE
Q 017161 232 RVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA--RGNIK 309 (376)
Q Consensus 232 ~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~ 309 (376)
.++++++...+.|.....++.+|..+....|+||||||||.++..+....... ..+.+.+++..++++.. ..+++
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA---SRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CT---HHHHHHHHHHHHHHHC-----CEE
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchH---HHHHHHHHHHHhhcccccCCCCEE
Confidence 99999999999999999999999999999999999999999987764332222 33444455555555433 46799
Q ss_pred EEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCC
Q 017161 310 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNSTG 375 (376)
Q Consensus 310 VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~sG 375 (376)
||+|||+++.++++++| ||+..++++.|+.++|.+||+.++...+.. .+.++..|++.+.||+|
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSG 319 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCH
Confidence 99999999999999999 999999999999999999999999876543 44578999999999987
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.6e-29 Score=270.87 Aligned_cols=213 Identities=42% Similarity=0.774 Sum_probs=196.0
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
..++++|++|+|++++++.|++++..|+.+|++|.++++.++.++||+||||||||+||+++|+.++.+++.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 241 ~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
.+.++....++.+|+.+....|+++||||+|.++..+.... .....+.+.+++..+++.....++++|+|||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC---SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc---chHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 99999999999999999999999999999999988764322 333455566777778888778899999999999999
Q ss_pred CccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 321 DPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 321 d~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|++++++|||++.+.++.|+.++|.+|++.+++.+.+..++++..++..+.||+|+
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~ 409 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchH
Confidence 99999999999999999999999999999999999988889999999999999874
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.96 E-value=1.4e-29 Score=241.14 Aligned_cols=174 Identities=22% Similarity=0.321 Sum_probs=133.7
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHH----HcCCCeEEEEcCCcc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA----RSKKACIVFFDEVDA 272 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a----~~~~psIl~iDEiD~ 272 (376)
.+.++|+++|||||||||||++|+++|++++.+|+.++++++...++|.+...++.+|..| +...|+||||||||+
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3678899999999999999999999999999999999999999999999999999999998 577899999999999
Q ss_pred cccCCCCCC--CCCCHHHHHHHHHHHHHhc--------CCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHH
Q 017161 273 IGGARFDDG--VGGDNEVQRTMLEIVNQLD--------GFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE 342 (376)
Q Consensus 273 l~~~r~~~~--~~~~~~~~~~l~~ll~~ld--------~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~ 342 (376)
+++.+.+.. ......++..|+++++... ......+++||+|||+++.+|++++|||||+..++ .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 987553211 1123345566666665221 22245679999999999999999999999999887 57999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 343 SRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 343 ~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
+|.+|++.++... +++++.+++.+.||+|+
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~ 218 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQ 218 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSC
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcc
Confidence 9999999888643 46789999999999986
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=1.1e-27 Score=241.40 Aligned_cols=195 Identities=22% Similarity=0.239 Sum_probs=143.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC--CceEEEechhhh
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSELV 239 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~--~~~i~v~~~el~ 239 (376)
.|...|++++|++++++.+..++.. ...|..+++++|||||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 4556789999999999999888864 334667889999999999999999999999998 999999999999
Q ss_pred HhhhchhhHHHHHHHHHH---HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHH-H---------------HHHHHHHhc
Q 017161 240 QKYVGEGARMVRELFQMA---RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR-T---------------MLEIVNQLD 300 (376)
Q Consensus 240 ~~~~g~~~~~~~~lf~~a---~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~-~---------------l~~ll~~ld 300 (376)
.++.|+.+. ++.+|..| +...|+||||||+|++++.|.....++...... . ..+++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999887 89999999 788999999999999999885543222111111 1 112444443
Q ss_pred --CCCCCCCeEEEEEeCCCCCCCccccCCCCcce--EEEecCCC--HHHHHHHHHHHhccCCCCCcccHHHHHHHCCC
Q 017161 301 --GFDARGNIKVLMATNRPDTLDPALLRPGRLDR--KVEFGLPD--LESRTQIFKIHTRTMNCERDIRFELLARLCPN 372 (376)
Q Consensus 301 --~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~--~i~~~~Pd--~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g 372 (376)
++.....++|++|||+++.+|++++||||||+ .+.++.|+ .++|.+|++.++. .|++.+|..|+|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-----
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC
Confidence 33333446666899999999999999999999 66777774 4777777765542 256777777776
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=6.9e-22 Score=188.04 Aligned_cols=188 Identities=22% Similarity=0.280 Sum_probs=149.1
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCC---CceeeecCCCChHHHHHHHHHHhc-------CCceEEEechhh
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPP---KGVLCYGPPGTGKTLLARAVANRT-------DACFIRVIGSEL 238 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~---~~vLL~GppGtGKT~LakalA~~l-------~~~~i~v~~~el 238 (376)
+|+|++++++.|.+++..+. .+..+..+|+.++ .++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 69999999999999998744 4677777776554 469999999999999999999987 348999999999
Q ss_pred hHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 239 VQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 239 ~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
...+.|.....+..+|..+ .++||||||+|.++..+.+ ...+...+..|+.+++. ...+++||++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~-----~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----NRDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH-----CTTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc-----CCCCEEEEEeCChHH
Confidence 9999998888888888887 3569999999999765432 23456677777777764 246788999998653
Q ss_pred -----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHH
Q 017161 319 -----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARL 369 (376)
Q Consensus 319 -----~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~ 369 (376)
.++|+|++ ||+..+.|+.|+.+++..|++.++...+.. .+..+..++..
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~ 235 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAY 235 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHH
T ss_pred HHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 35799999 999999999999999999999999876543 22234555554
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.85 E-value=2.7e-20 Score=179.44 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=143.1
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEec
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~ 235 (376)
..+.+++.+.+|++++|.+.+++.+..++.... ..-.++.++||+||||||||++|+++|+.++.+|+.+++
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~--------~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAK--------KRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHH--------HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHH--------hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecc
Confidence 345677788899999999999999999987521 122456789999999999999999999999999999998
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCC-------------
Q 017161 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------------- 302 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~------------- 302 (376)
+.+. ....+...+.. ...+++|||||||.+ ....+..++..++.....
T Consensus 89 ~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 149 (338)
T 3pfi_A 89 PMIE------KSGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIK 149 (338)
T ss_dssp GGCC------SHHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCC
T ss_pred hhcc------chhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCcccccee
Confidence 7652 12223333322 346789999999998 567788888877653210
Q ss_pred CCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 017161 303 DARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 303 ~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~ 373 (376)
....++.+|++||....++++|++ ||+..+.+++|+.+++..+++.++...+.. .+..++.|++.++|.
T Consensus 150 ~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~ 219 (338)
T 3pfi_A 150 IDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST 219 (338)
T ss_dssp CCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC
T ss_pred cCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC
Confidence 011258899999999999999999 999999999999999999999998876643 334567788877765
No 33
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.85 E-value=3.4e-22 Score=199.30 Aligned_cols=169 Identities=19% Similarity=0.217 Sum_probs=85.5
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCC-CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH-hhhch
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGID-PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGE 245 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~-~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~-~~~g~ 245 (376)
++|+|++++++.|..++..++.++.++..++.. +++++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 369999999999999998877777666555443 5789999999999999999999999999999999999888 58985
Q ss_pred -hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEE-eCCCCCCCcc
Q 017161 246 -GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA-TNRPDTLDPA 323 (376)
Q Consensus 246 -~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~t-Tn~~~~ld~a 323 (376)
.+..++.+|..+... +++||++.+.... ......+.+.+|+..||++....++ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788899999998764 4588888774322 1223357778888999998666554 555 9999999999
Q ss_pred ccCCCCcceEEEecCCCHH-HHHHHH
Q 017161 324 LLRPGRLDRKVEFGLPDLE-SRTQIF 348 (376)
Q Consensus 324 llr~gRfd~~i~~~~Pd~~-~r~~Il 348 (376)
|+||||||+.|++++|+.. .|.+||
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999988 788876
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.83 E-value=1.8e-19 Score=172.20 Aligned_cols=185 Identities=19% Similarity=0.262 Sum_probs=141.4
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
.++..+.+|++++|.+..++.+..++... .. +-..+.++||+||||||||++|+++++.++.+++.++++.+
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~-------~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAA-------KA-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHH-------HH-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHH-------Hc-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 34567779999999999999999888642 11 11356789999999999999999999999999999988765
Q ss_pred hHhhhchhhHHHHHHHHHHHc--CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc-----CCC--------
Q 017161 239 VQKYVGEGARMVRELFQMARS--KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GFD-------- 303 (376)
Q Consensus 239 ~~~~~g~~~~~~~~lf~~a~~--~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld-----~~~-------- 303 (376)
.. . .+++..... ..+++|||||+|.+ ....+..+..+++... +..
T Consensus 75 ~~------~---~~l~~~l~~~~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 75 EK------P---GDLAAILANSLEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp CS------H---HHHHHHHTTTCCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred CC------h---HHHHHHHHHhccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhcccccccccccc
Confidence 22 1 122222222 45779999999998 5667788888877642 000
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 017161 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 304 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~ 373 (376)
...++.+|++||.+..++++|++ ||+..+.+++|+.+++..+++.++...+.. .+..++.|+..++|.
T Consensus 135 ~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~ 203 (324)
T 1hqc_A 135 ELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT 203 (324)
T ss_dssp ECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC
T ss_pred CCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC
Confidence 11357899999999999999998 998899999999999999999998766543 234577888888775
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.80 E-value=5.1e-19 Score=169.63 Aligned_cols=181 Identities=22% Similarity=0.271 Sum_probs=139.1
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEec
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~ 235 (376)
..|.+++++.+|++++|.+++++.++.++.. + ..+..+|++||||||||++|+++|+.++..++.+++
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSK-----------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4688999999999999999999999999973 1 345678889999999999999999999999999998
Q ss_pred hhhhHhhhchhhHHHHHHHHH-HHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEE
Q 017161 236 SELVQKYVGEGARMVRELFQM-ARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~-a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~V 310 (376)
+... ...++..+.. +.. ..+.||||||+|.+. ..+.+..+..+++.. ..++.+
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~----------~~~~~~~L~~~le~~-----~~~~~i 139 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG----------LAESQRHLRSFMEAY-----SSNCSI 139 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG----------GHHHHHHHHHHHHHH-----GGGCEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC----------cHHHHHHHHHHHHhC-----CCCcEE
Confidence 7642 2233433333 322 257899999999982 156778888888764 356789
Q ss_pred EEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh-------c--cCCCCCcccHHHHHHHCCCC
Q 017161 311 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT-------R--TMNCERDIRFELLARLCPNS 373 (376)
Q Consensus 311 I~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~-------~--~~~~~~~vdl~~lA~~t~g~ 373 (376)
|++||.+..+++++++ || ..+.|+.|+.++|.+|++.+. . .+.+++...++.|++.+.|-
T Consensus 140 I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd 208 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD 208 (324)
T ss_dssp EEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC
T ss_pred EEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC
Confidence 9999999999999999 88 579999999999877665443 2 22332214577888888764
No 36
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.80 E-value=9e-20 Score=159.39 Aligned_cols=163 Identities=25% Similarity=0.358 Sum_probs=123.3
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCc
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~ 229 (376)
+..++..|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T 1jbk_A 14 ERAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 80 (195)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCE
T ss_pred HHHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCc
Confidence 344566889999999999999888754 346789999999999999999999986 678
Q ss_pred eEEEechhhh--HhhhchhhHHHHHHHHHHH-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 017161 230 FIRVIGSELV--QKYVGEGARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (376)
Q Consensus 230 ~i~v~~~el~--~~~~g~~~~~~~~lf~~a~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 306 (376)
++.+++..+. ..+.+.....+..++..+. ...++||||||+|.+...+.. ......+..+..++. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~~~~~l~~~~~-------~~ 150 (195)
T 1jbk_A 81 VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPALA-------RG 150 (195)
T ss_dssp EEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------TT
T ss_pred EEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cchHHHHHHHHHhhc-------cC
Confidence 8889888776 3445556667777777653 466889999999999654321 112233445555443 35
Q ss_pred CeEEEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHH
Q 017161 307 NIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIF 348 (376)
Q Consensus 307 ~v~VI~tTn~~~-----~ld~allr~gRfd~~i~~~~Pd~~~r~~Il 348 (376)
++.+|++||.+. .+++++++ ||+ .+.++.|+.+++.+||
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 ELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 677899998875 78999999 997 6999999999998876
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=2.4e-19 Score=167.94 Aligned_cols=194 Identities=18% Similarity=0.193 Sum_probs=131.5
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh-hhchh
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK-YVGEG 246 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~-~~g~~ 246 (376)
+.++|.++.++.+....... ...+...+..++.++||+||||||||++|+++|+.++.+|+.+++++.... ..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 45788888877777642210 112233345677899999999999999999999999999999988763211 11223
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCc-cc
Q 017161 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-ARGNIKVLMATNRPDTLDP-AL 324 (376)
Q Consensus 247 ~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~VI~tTn~~~~ld~-al 324 (376)
...++.+|..+....+++|||||+|.+++.+..+ ........+.|.. .+++.. ...+++||+|||.++.+++ .+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~---~~~~~~~~~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLV---LLKKAPPQGRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHH---HTTCCCSTTCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHH---HhcCccCCCCCEEEEEecCChhhcchhhh
Confidence 3567888998888889999999999997654321 1123333444433 344433 3446889999999988887 56
Q ss_pred cCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 017161 325 LRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 373 (376)
Q Consensus 325 lr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~ 373 (376)
++ ||+..+.+|.++. |.+|.....+...+ .+.++..+++.+.||
T Consensus 186 ~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 186 LN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGK 229 (272)
T ss_dssp TT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTS
T ss_pred hc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCC
Confidence 65 9999888876654 33344443333333 345688899988886
No 38
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.80 E-value=2.2e-18 Score=153.99 Aligned_cols=180 Identities=22% Similarity=0.249 Sum_probs=135.8
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCce
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACF 230 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~ 230 (376)
.++.+++++..|++++|.++.++.+.+++.. ..+.+++|+||||||||++++++++.+ ...+
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~ 71 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNF 71 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGE
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccce
Confidence 3467778889999999999999999999864 123459999999999999999999875 4567
Q ss_pred EEEechhhhHhhhchhhHHHHHHHHHHH------cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC
Q 017161 231 IRVIGSELVQKYVGEGARMVRELFQMAR------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA 304 (376)
Q Consensus 231 i~v~~~el~~~~~g~~~~~~~~lf~~a~------~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 304 (376)
+.++++.... ...+...+.... ...+.+|||||+|.+ ....+..+..+++..
T Consensus 72 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~----- 129 (226)
T 2chg_A 72 IEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEMY----- 129 (226)
T ss_dssp EEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----
T ss_pred EEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHhc-----
Confidence 7777754322 112222222221 256789999999998 556677777777653
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 017161 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 305 ~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~ 373 (376)
..++.+|++||.+..+++++.+ ||. .+.+++|+.++..+++..++...+.. .+..+..|++.+.|.
T Consensus 130 ~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 196 (226)
T 2chg_A 130 SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD 196 (226)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 4578899999999999999999 886 89999999999999999888654433 233567777777663
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.79 E-value=4e-19 Score=172.95 Aligned_cols=182 Identities=24% Similarity=0.303 Sum_probs=126.8
Q ss_pred CCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEechhhhH
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQ 240 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~el~~ 240 (376)
|..+|++++|.+.+++.+..+... ...+..+++++||+||||||||++|+++|+.++. +|+.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~--------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM--------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHH--------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 445699999999998887665543 2225556789999999999999999999999874 788888766332
Q ss_pred hhh-------------------------------------------------chhhHHHHHHHHHHHc-----C----CC
Q 017161 241 KYV-------------------------------------------------GEGARMVRELFQMARS-----K----KA 262 (376)
Q Consensus 241 ~~~-------------------------------------------------g~~~~~~~~lf~~a~~-----~----~p 262 (376)
.+. |.....++..+..+.. . .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 221 1113344455544332 2 26
Q ss_pred eEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe-----------CCCCCCCccccCCCCcc
Q 017161 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT-----------NRPDTLDPALLRPGRLD 331 (376)
Q Consensus 263 sIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT-----------n~~~~ld~allr~gRfd 331 (376)
+||||||+|.+ +.+.++.+..+++. ....++++++. |.+..++++|++ ||.
T Consensus 191 ~vl~IDEi~~l-----------~~~~~~~L~~~le~-----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHML-----------DIESFSFLNRALES-----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGS-----------BHHHHHHHHHHTTC-----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhcccc-----------ChHHHHHHHHHhhC-----cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 79999999998 55666666655532 22344444443 247789999999 996
Q ss_pred eEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCC
Q 017161 332 RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCP 371 (376)
Q Consensus 332 ~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~ 371 (376)
. +.|++|+.+++.+|++.++...+.. .+..++.|++.+.
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~ 292 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGL 292 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 5 8999999999999999988764433 2334677777765
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=5e-19 Score=172.84 Aligned_cols=179 Identities=25% Similarity=0.304 Sum_probs=127.0
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHh-cC-CCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh-hhchh
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVK-LG-IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK-YVGEG 246 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~-~g-~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~-~~g~~ 246 (376)
|+|++.+++.+..++............ .+ ..++.++||+||||||||++|+++|+.++.+|+.++++++... |+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 799999999999988543221111000 01 1357899999999999999999999999999999999998754 77765
Q ss_pred -hHHHHHHHHHH----HcCCCeEEEEcCCcccccCCCCCCCCCCHH---HHHHHHHHHHHhc-------C---------C
Q 017161 247 -ARMVRELFQMA----RSKKACIVFFDEVDAIGGARFDDGVGGDNE---VQRTMLEIVNQLD-------G---------F 302 (376)
Q Consensus 247 -~~~~~~lf~~a----~~~~psIl~iDEiD~l~~~r~~~~~~~~~~---~~~~l~~ll~~ld-------~---------~ 302 (376)
...++.+|..+ ....++||||||+|.+...+.....+.+.. ++..|+++|+... + +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55677777665 334567999999999987765443333322 5666666665100 0 1
Q ss_pred CCCCCeEEEEEeCCC----------CC-----------------------------------CCccccCCCCcceEEEec
Q 017161 303 DARGNIKVLMATNRP----------DT-----------------------------------LDPALLRPGRLDRKVEFG 337 (376)
Q Consensus 303 ~~~~~v~VI~tTn~~----------~~-----------------------------------ld~allr~gRfd~~i~~~ 337 (376)
-...|+++|+++|.. .. +.|+|++ ||+..+.|.
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 123466677777642 11 6888888 999999999
Q ss_pred CCCHHHHHHHHHH
Q 017161 338 LPDLESRTQIFKI 350 (376)
Q Consensus 338 ~Pd~~~r~~Il~~ 350 (376)
+|+.+.+.+|+..
T Consensus 255 pl~~~~~~~I~~~ 267 (363)
T 3hws_A 255 ELSEEALIQILKE 267 (363)
T ss_dssp CCCHHHHHHHHHS
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999986
No 41
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.79 E-value=1.4e-19 Score=192.90 Aligned_cols=162 Identities=24% Similarity=0.372 Sum_probs=126.1
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCC---C-CceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDP---P-KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~---~-~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~ 240 (376)
++++|++.+++.+.+++... ..|... | .++||+||||||||++|+++|+.+ +.+|++++++++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRA--------RAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------TTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHH--------HcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 46999999999999999752 223322 2 269999999999999999999987 78999999999987
Q ss_pred hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC------CCCCeEEEEEe
Q 017161 241 KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------ARGNIKVLMAT 314 (376)
Q Consensus 241 ~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------~~~~v~VI~tT 314 (376)
.+... ...++...+...++||||||||.+ ++++++.|+++++.-.-.. ...+++||+||
T Consensus 563 ~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 563 KHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ccccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 66554 222344455567789999999998 7889999999998732111 23478999999
Q ss_pred CCCCC------------CCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 315 NRPDT------------LDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 315 n~~~~------------ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
|.+.. +.|+|++ ||+..+.|++|+.+++..|++.++..
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 97544 7888988 99999999999999999999887754
No 42
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.79 E-value=4.6e-20 Score=189.64 Aligned_cols=171 Identities=20% Similarity=0.296 Sum_probs=119.9
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH---
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ--- 240 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~--- 240 (376)
..-+++++|+++++..+.+.+.....+. .+ ++.+++|+||||||||++|+++|+.++.++..+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 3345679999999999988776522111 11 4668999999999999999999999999999998876533
Q ss_pred ------hhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCC--------C
Q 017161 241 ------KYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFD--------A 304 (376)
Q Consensus 241 ------~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~--------~ 304 (376)
.++|.....+...|..+....| |+||||||.+...+ ..+.+..|+++++... .+. .
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~-------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~ 221 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF-------RGDPSSAMLEVLDPEQNSSFSDHYIEETFD 221 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh-------ccCHHHHHHHHHhhhhcceeecccCCeeec
Confidence 4566666667777887766666 99999999996543 1123444444443211 111 1
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 305 ~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
..+++||+|||.++.++++|++ || ..|.|+.|+.+++..|++.++
T Consensus 222 ~~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 222 LSKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTH
T ss_pred ccceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHH
Confidence 1578999999999999999999 99 479999999999999999887
No 43
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.78 E-value=5.7e-19 Score=167.24 Aligned_cols=179 Identities=28% Similarity=0.378 Sum_probs=125.3
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhc-CCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH-hhhch
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKL-GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ-KYVGE 245 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~-g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~-~~~g~ 245 (376)
++|+|++++++.+..++..++.++.+...+ +-..+.++||+||||||||++|+++|+.++.+++.++++.+.. .++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 359999999999998887543222211111 1135679999999999999999999999999999999998865 45554
Q ss_pred h-hHHHHHHHHHH-----HcCCCeEEEEcCCcccccCCCCCCCCCCH---HHHHHHHHHHHHhc-----CCCCCCCeEEE
Q 017161 246 G-ARMVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLD-----GFDARGNIKVL 311 (376)
Q Consensus 246 ~-~~~~~~lf~~a-----~~~~psIl~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~ld-----~~~~~~~v~VI 311 (376)
. ...++.++..+ ....++||||||+|.+....... +.+. .+++.|+.+++... +.....++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 34456665532 11235799999999997654321 1111 12445555554310 00123578888
Q ss_pred EEe----CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHH
Q 017161 312 MAT----NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 350 (376)
Q Consensus 312 ~tT----n~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~ 350 (376)
+++ +.+..++++|++ ||+..+.|++|+.+++.+|++.
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 884 567889999998 9999999999999999999983
No 44
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=5.7e-19 Score=180.48 Aligned_cols=199 Identities=18% Similarity=0.242 Sum_probs=137.0
Q ss_pred ccccccccCCCCCcccccCcHHHHHHHHHHhhccc-CchhhhHhcCCC---CCCceeeecCCCChHHHHHHHHHHhcCCc
Q 017161 154 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPM-LHPEKFVKLGID---PPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (376)
Q Consensus 154 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l-~~~~~~~~~g~~---~~~~vLL~GppGtGKT~LakalA~~l~~~ 229 (376)
...+|++++++.+|++|+|.+.+++.|++++.... .++..|...|.. +++++||+||||||||++|+++|++++.+
T Consensus 25 ~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 25 SDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred cCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34689999999999999999999999999997522 222334444443 56799999999999999999999999999
Q ss_pred eEEEechhhhHhhhchhh-------HHHHHHHHHH-----HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 017161 230 FIRVIGSELVQKYVGEGA-------RMVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (376)
Q Consensus 230 ~i~v~~~el~~~~~g~~~-------~~~~~lf~~a-----~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (376)
++.++++++......... ..+..+|..+ ....++||||||+|.+... .......+..++.
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~--------~~~~l~~L~~~l~ 176 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--------DRGGVGQLAQFCR 176 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT--------STTHHHHHHHHHH
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh--------hHHHHHHHHHHHH
Confidence 999999876543321110 0122333333 2356789999999999542 1223355555555
Q ss_pred HhcCCCCCCCeEEEEEeCCC--CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc--CCCCCcccHHHHHHHCCC
Q 017161 298 QLDGFDARGNIKVLMATNRP--DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLARLCPN 372 (376)
Q Consensus 298 ~ld~~~~~~~v~VI~tTn~~--~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~--~~~~~~vdl~~lA~~t~g 372 (376)
. .++.||+++|.. ..+ +.++ |+...+.|+.|+.+++.+++...+.. +.++++ .+..|++.+.|
T Consensus 177 ~-------~~~~iIli~~~~~~~~l-~~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G 243 (516)
T 1sxj_A 177 K-------TSTPLILICNERNLPKM-RPFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG 243 (516)
T ss_dssp H-------CSSCEEEEESCTTSSTT-GGGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT
T ss_pred h-------cCCCEEEEEcCCCCccc-hhhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 4 223355555543 333 3444 44579999999999999999887754 444444 48889998876
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.76 E-value=1.3e-17 Score=160.02 Aligned_cols=182 Identities=23% Similarity=0.294 Sum_probs=128.3
Q ss_pred CCCCCccccc-C--cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 162 KPDVTYNDVG-G--CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 162 ~~~~~~~di~-G--~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
.|..+|++++ | .......++.++..+ -..+.+++||||||||||++|+++++.+ +.+++.+++
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 3456788886 4 445555666666542 1245789999999999999999999988 899999999
Q ss_pred hhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 236 SELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 236 ~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
.++...+.+.........|..... .+++|||||++.+.. ....+..+..+++.+. ..+..+|+++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~---------~~~~~~~l~~~l~~~~---~~~~~iii~~~~ 140 (324)
T 1l8q_A 74 DDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSG---------KERTQIEFFHIFNTLY---LLEKQIILASDR 140 (324)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTT---------CHHHHHHHHHHHHHHH---HTTCEEEEEESS
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccC---------ChHHHHHHHHHHHHHH---HCCCeEEEEecC
Confidence 988766554433222222333222 367999999999843 3356777777776542 233455666666
Q ss_pred CCC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHC
Q 017161 316 RPD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 370 (376)
Q Consensus 316 ~~~---~ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t 370 (376)
.+. .++++|++ ||. ..+.+++ +.+++..|++.++...++. ++..++.|++.+
T Consensus 141 ~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 141 HPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp CGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred ChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 554 68999998 886 6899999 9999999999998755443 233477888877
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.75 E-value=1.8e-18 Score=174.74 Aligned_cols=176 Identities=22% Similarity=0.316 Sum_probs=128.0
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------C
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------D 227 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~ 227 (376)
+.+...+-++++|+|.++.++.+.+.+.. ....++||+||||||||++|+++|..+ +
T Consensus 170 l~~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~ 236 (468)
T 3pxg_A 170 LTAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (468)
T ss_dssp HHHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred HHHHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 34556777899999999999999988864 345689999999999999999999986 7
Q ss_pred CceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 017161 228 ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (376)
Q Consensus 228 ~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 307 (376)
.+++.+++. ..+.|+....++.+|..+....++||||| + ..+.++.|...+ ..+.
T Consensus 237 ~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L-------~~g~ 291 (468)
T 3pxg_A 237 KRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARGE 291 (468)
T ss_dssp CCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSSS
T ss_pred CeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh-------cCCC
Confidence 788888877 66778878888999999998889999999 1 222333333322 3567
Q ss_pred eEEEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC----CCC-CcccHHHHHHHCCCCC
Q 017161 308 IKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLARLCPNST 374 (376)
Q Consensus 308 v~VI~tTn~~~-----~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~----~~~-~~vdl~~lA~~t~g~s 374 (376)
+.+|++||..+ .++++|+| ||. .+.|+.|+.+++..||+.++..+ ++. .+..+..++.++.+|.
T Consensus 292 v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 292 LQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred EEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 99999999987 69999999 996 59999999999999999887663 221 2334666777666554
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.74 E-value=1.1e-17 Score=167.78 Aligned_cols=174 Identities=24% Similarity=0.316 Sum_probs=128.1
Q ss_pred ccccCCCCCcccccCcHHHH---HHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 158 TVEEKPDVTYNDVGGCKEQI---EKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~---~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
+.+...+.+|++++|++..+ ..|+..+.. ....++|||||||||||++|+++|+.++.+|+.++
T Consensus 16 la~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp HHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 45667788999999999999 788888865 12368999999999999999999999999999998
Q ss_pred chhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEE
Q 017161 235 GSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (376)
Q Consensus 235 ~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~V 310 (376)
+... +...++.++..+. ...+.||||||||.+ ....+..|+..++. +.+++
T Consensus 83 a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l-----------~~~~q~~LL~~le~-------~~v~l 137 (447)
T 3pvs_A 83 AVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRF-----------NKSQQDAFLPHIED-------GTITF 137 (447)
T ss_dssp TTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSCEE
T ss_pred eccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhh-----------CHHHHHHHHHHHhc-------CceEE
Confidence 7543 2334455555543 356789999999998 33345556666553 45777
Q ss_pred EEEe--CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC-------CC-CcccHHHHHHHCCC
Q 017161 311 LMAT--NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN-------CE-RDIRFELLARLCPN 372 (376)
Q Consensus 311 I~tT--n~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~-------~~-~~vdl~~lA~~t~g 372 (376)
|++| |....++++|++ |+. .+.|++|+.+++..+++..+.... +. .+..++.|++.++|
T Consensus 138 I~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G 206 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG 206 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS
T ss_pred EecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC
Confidence 8777 444689999999 884 788999999999999999987621 11 22346777777665
No 48
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.74 E-value=3.6e-18 Score=148.92 Aligned_cols=156 Identities=19% Similarity=0.327 Sum_probs=117.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCc
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DAC 229 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~ 229 (376)
+...+..|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~ 80 (187)
T 2p65_A 14 ALARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRK 80 (187)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCE
T ss_pred HHHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCe
Confidence 345566889999999999999888753 346689999999999999999999986 778
Q ss_pred eEEEechhhhHh--hhchhhHHHHHHHHHHHcC-CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 017161 230 FIRVIGSELVQK--YVGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (376)
Q Consensus 230 ~i~v~~~el~~~--~~g~~~~~~~~lf~~a~~~-~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 306 (376)
++.+++..+... +.+.....+..++..+... .+.+|||||+|.+.+.+... ....+..+.+..+++ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~~~~~~~~~l~~~~~-------~~ 151 (187)
T 2p65_A 81 LVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVA--EGALDAGNILKPMLA-------RG 151 (187)
T ss_dssp EEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSC--TTSCCTHHHHHHHHH-------TT
T ss_pred EEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccc--ccchHHHHHHHHHHh-------cC
Confidence 888888777532 4455556677777776654 68899999999997554311 112334455555543 35
Q ss_pred CeEEEEEeCCCC-----CCCccccCCCCcceEEEecCCC
Q 017161 307 NIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPD 340 (376)
Q Consensus 307 ~v~VI~tTn~~~-----~ld~allr~gRfd~~i~~~~Pd 340 (376)
++.+|++||.+. .+++++++ ||+ .+.++.|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 678999999764 68999999 997 49999886
No 49
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.74 E-value=6e-18 Score=160.66 Aligned_cols=184 Identities=21% Similarity=0.239 Sum_probs=133.1
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCce
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACF 230 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~ 230 (376)
.+|.+++++.+|++++|.+.+++.+..++.. + ...++||+||||||||++|+++|+.+ +..+
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 71 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNF 71 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHC
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCe
Confidence 3577889999999999999999999988754 1 22349999999999999999999986 3457
Q ss_pred EEEechhhhHhhhchhhHHHHHHHHHH-H-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCe
Q 017161 231 IRVIGSELVQKYVGEGARMVRELFQMA-R-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (376)
Q Consensus 231 i~v~~~el~~~~~g~~~~~~~~lf~~a-~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 308 (376)
+.+++++... .......+....... . ...+.||+|||+|.+ ....+..+..++ +. ...++
T Consensus 72 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~l---e~--~~~~~ 133 (319)
T 2chq_A 72 IEMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTM---EM--YSKSC 133 (319)
T ss_dssp EEEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-----------CHHHHHTTGGGT---SS--SSSSE
T ss_pred EEEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-----------CHHHHHHHHHHH---Hh--cCCCC
Confidence 7888765421 111112222221111 1 245789999999998 444455544443 32 34678
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 017161 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 309 ~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~ 373 (376)
.+|++||.+..+.+++++ |+. .+.|++|+.+++..++..+++..++. .+..++.|+..++|.
T Consensus 134 ~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~ 196 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD 196 (319)
T ss_dssp EEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTC
T ss_pred eEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 899999999999999999 884 89999999999999999988766553 233567788777763
No 50
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=3.4e-17 Score=156.04 Aligned_cols=184 Identities=18% Similarity=0.257 Sum_probs=136.0
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC-----Cce
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD-----ACF 230 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~-----~~~ 230 (376)
..|.+++++.+|++++|.+.+++.+..++.. + ...++||+||||||||++|+++|+.+. ..+
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 4678889999999999999999999988864 1 223599999999999999999999863 346
Q ss_pred EEEechhhhHhhhchhhHHHHHHHHHH--HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCe
Q 017161 231 IRVIGSELVQKYVGEGARMVRELFQMA--RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNI 308 (376)
Q Consensus 231 i~v~~~el~~~~~g~~~~~~~~lf~~a--~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 308 (376)
+.+++++.... ......+....... ....+.+|+|||+|.+ +...+..+..+++.. ..++
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~ 141 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDAQQALRRTMEMF-----SSNV 141 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTE
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHHHHHHHHHHHhc-----CCCC
Confidence 77776654221 11111122211100 0145789999999998 566777888777753 4578
Q ss_pred EEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 017161 309 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 309 ~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~ 373 (376)
.+|++||.+..+.+++.+ |+. .+.|++|+.++...++..+++..++. .+..++.|+..+.|.
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 204 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGD 204 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTC
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCC
Confidence 899999999999999998 885 88999999999999999888765543 233467787777663
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=1.6e-17 Score=160.32 Aligned_cols=180 Identities=18% Similarity=0.246 Sum_probs=134.9
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC------Cc
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD------AC 229 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~------~~ 229 (376)
..|.+++++.+|++++|.+++++.+..++.. ....++||+||||||||++|+++|+.++ ..
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~ 91 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR 91 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence 4678899999999999999999999988864 1223599999999999999999999853 45
Q ss_pred eEEEechhhhHhhhchhhHHHHHHHHHH-H---------------cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHH
Q 017161 230 FIRVIGSELVQKYVGEGARMVRELFQMA-R---------------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML 293 (376)
Q Consensus 230 ~i~v~~~el~~~~~g~~~~~~~~lf~~a-~---------------~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 293 (376)
++.+++++... ...++..+... . ...+.||||||+|.+ ....+..+.
T Consensus 92 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-----------~~~~~~~Ll 154 (353)
T 1sxj_D 92 ILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-----------TADAQSALR 154 (353)
T ss_dssp EEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-----------CHHHHHHHH
T ss_pred eEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-----------CHHHHHHHH
Confidence 77777765311 11111111111 1 134569999999998 566778888
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 294 EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 294 ~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
.+++.. ..++.+|++||.+..+++++++ |+. .+.|++|+.++...++...+...++. .+..++.|++.+.|
T Consensus 155 ~~le~~-----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 155 RTMETY-----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 226 (353)
T ss_dssp HHHHHT-----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred HHHHhc-----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 887764 3467788899999999999999 885 89999999999999999888654432 33457888888876
Q ss_pred C
Q 017161 373 S 373 (376)
Q Consensus 373 ~ 373 (376)
.
T Consensus 227 ~ 227 (353)
T 1sxj_D 227 D 227 (353)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=2.6e-17 Score=156.59 Aligned_cols=180 Identities=18% Similarity=0.246 Sum_probs=137.0
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCce
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACF 230 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~ 230 (376)
..+.+++++.+|++++|.+..++.|..++.. + ..+ +++|+||||+|||++|+++++.+ +..+
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 75 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGV 75 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCE
Confidence 3567788899999999999999999999864 1 223 49999999999999999999986 3456
Q ss_pred EEEechhhhHhhhchhhHHHHHHHHHHH-------cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 017161 231 IRVIGSELVQKYVGEGARMVRELFQMAR-------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (376)
Q Consensus 231 i~v~~~el~~~~~g~~~~~~~~lf~~a~-------~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 303 (376)
+.+++++.. +...++.++.... ...+.+|+|||+|.+ ....++.+..+++..
T Consensus 76 ~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~---- 134 (323)
T 1sxj_B 76 LELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-----------TAGAQQALRRTMELY---- 134 (323)
T ss_dssp EEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-----------CHHHHHTTHHHHHHT----
T ss_pred EEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccC-----------CHHHHHHHHHHHhcc----
Confidence 777765421 1234444554443 334789999999998 455677777777652
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCC
Q 017161 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 304 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g~ 373 (376)
..++.+|++||.+..+.+++++ |+. .+.|++|+.++..+++..+++..++. .+..+..|++.+.|.
T Consensus 135 -~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~ 201 (323)
T 1sxj_B 135 -SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD 201 (323)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC
T ss_pred -CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 4678889999999999999998 774 89999999999999999887654433 233567788887764
No 53
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.74 E-value=5.7e-17 Score=146.37 Aligned_cols=180 Identities=21% Similarity=0.289 Sum_probs=132.5
Q ss_pred cccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc-------
Q 017161 157 MTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC------- 229 (376)
Q Consensus 157 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~------- 229 (376)
.+.+.+.+..|++++|.+..++.|..++.. + ..+..++|+||||||||++++++++.+...
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~ 79 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 79 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 456778888999999999999999998864 1 234579999999999999999999976432
Q ss_pred -----------------eEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHH
Q 017161 230 -----------------FIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEV 288 (376)
Q Consensus 230 -----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~ 288 (376)
++.+.... ......++.++..+. ...+.+|+|||+|.+ +...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~ 142 (250)
T 1njg_A 80 CGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHS 142 (250)
T ss_dssp CSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHH
T ss_pred CcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHH
Confidence 12222211 012233445554432 245789999999998 5566
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHH
Q 017161 289 QRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLA 367 (376)
Q Consensus 289 ~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA 367 (376)
+..+..++.. ...++.+|++||.+..+++++++ |+ ..+.+++|+.++..+++..++...+.. .+..++.|+
T Consensus 143 ~~~l~~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 143 FNALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHHHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 6666666643 24578899999999999999998 75 789999999999999999988765433 233467888
Q ss_pred HHCCCC
Q 017161 368 RLCPNS 373 (376)
Q Consensus 368 ~~t~g~ 373 (376)
+.|.|.
T Consensus 215 ~~~~G~ 220 (250)
T 1njg_A 215 RAAEGS 220 (250)
T ss_dssp HHHTTC
T ss_pred HHcCCC
Confidence 888774
No 54
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=2.9e-17 Score=158.98 Aligned_cols=182 Identities=14% Similarity=0.229 Sum_probs=132.0
Q ss_pred ccccccCCCCCcccccCcHHHHHHHHHHh-hcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC------
Q 017161 156 MMTVEEKPDVTYNDVGGCKEQIEKMREVV-ELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA------ 228 (376)
Q Consensus 156 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i-~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~------ 228 (376)
++|++++++.+|++++|++.+++.++.++ .. + ..+. ++|+||+|||||++++++|+.+..
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i 68 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRL 68 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeE
Confidence 36899999999999999999999998887 32 1 2233 999999999999999999996411
Q ss_pred -----------------------ceEEEechhhhHhhhchhhHHHHHHHHHHH--------------cCCCeEEEEcCCc
Q 017161 229 -----------------------CFIRVIGSELVQKYVGEGARMVRELFQMAR--------------SKKACIVFFDEVD 271 (376)
Q Consensus 229 -----------------------~~i~v~~~el~~~~~g~~~~~~~~lf~~a~--------------~~~psIl~iDEiD 271 (376)
.++.++.+... ......+++.+..+. ...|.||+|||++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~ 144 (354)
T 1sxj_E 69 KIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEAN 144 (354)
T ss_dssp -----------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTT
T ss_pred EecceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcc
Confidence 12222222110 000012444444332 2357799999999
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHH
Q 017161 272 AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIH 351 (376)
Q Consensus 272 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~ 351 (376)
.+ +...++.+..+++.. ..++.+|++||.++.+.+++++ |+ ..+.|++|+.++...+++..
T Consensus 145 ~L-----------~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 145 SL-----------TKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp SS-----------CHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHH
T ss_pred cc-----------CHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHH
Confidence 97 677788888888764 3468899999999999999999 88 88999999999999999998
Q ss_pred hccCCCC-C-cccHHHHHHHCCCC
Q 017161 352 TRTMNCE-R-DIRFELLARLCPNS 373 (376)
Q Consensus 352 ~~~~~~~-~-~vdl~~lA~~t~g~ 373 (376)
++..++. . +..++.|++.+.|-
T Consensus 206 ~~~~~~~~~~~~~l~~i~~~~~G~ 229 (354)
T 1sxj_E 206 VTNERIQLETKDILKRIAQASNGN 229 (354)
T ss_dssp HHHHTCEECCSHHHHHHHHHHTTC
T ss_pred HHHcCCCCCcHHHHHHHHHHcCCC
Confidence 8765543 2 44578888887763
No 55
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=3e-17 Score=155.84 Aligned_cols=166 Identities=25% Similarity=0.397 Sum_probs=122.6
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCC----CCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGI----DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ 240 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~ 240 (376)
++++|++.+++.+...+... ..++ ++..+++|+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~--------~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHH--------HHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred hhcCCHHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 35889999999999998752 1222 233479999999999999999999987 56799999887533
Q ss_pred -----hhhchhhH-----HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC------C
Q 017161 241 -----KYVGEGAR-----MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD------A 304 (376)
Q Consensus 241 -----~~~g~~~~-----~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~------~ 304 (376)
..+|.... ....+.........++|||||+|.+ +..++..|+++++...-.. .
T Consensus 89 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~ 157 (311)
T 4fcw_A 89 KHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVD 157 (311)
T ss_dssp TTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEE
T ss_pred cccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEE
Confidence 22221100 0012333334455689999999998 7788999999887643111 1
Q ss_pred CCCeEEEEEeCC--------------------------CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 305 RGNIKVLMATNR--------------------------PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 305 ~~~v~VI~tTn~--------------------------~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
-.++++|+|||. ...++++|++ ||+..+.+++|+.+++..|++.+++.
T Consensus 158 ~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 158 FRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp CTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred CCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 136889999998 4468889998 99999999999999999999987754
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.73 E-value=3.8e-17 Score=174.14 Aligned_cols=163 Identities=22% Similarity=0.320 Sum_probs=127.0
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCC----CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh---
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK--- 241 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~--- 241 (376)
+++|++++++.+..++.. ...|+. +..++||+||||||||++|+++|+.++.+|++++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 478999999998888865 334543 33479999999999999999999999999999999988653
Q ss_pred ---------hhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC------CC
Q 017161 242 ---------YVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA------RG 306 (376)
Q Consensus 242 ---------~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~------~~ 306 (376)
|+|.... ..+....+...++||||||||.+ ++++++.|+++++.-.-... -.
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 3332211 22344455567899999999998 78899999999886321111 14
Q ss_pred CeEEEEEeCCCC-------------------------CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 307 NIKVLMATNRPD-------------------------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 307 ~v~VI~tTn~~~-------------------------~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
+++||+|||... .++|+|++ ||+..+.|++|+.+++..|++.++..
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHH
Confidence 688999999753 57888998 99999999999999999999988863
No 57
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.73 E-value=4.4e-17 Score=163.28 Aligned_cols=184 Identities=22% Similarity=0.348 Sum_probs=128.7
Q ss_pred CCCCCccccc-CcH--HHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----CCceEEE
Q 017161 162 KPDVTYNDVG-GCK--EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRV 233 (376)
Q Consensus 162 ~~~~~~~di~-G~~--~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~v 233 (376)
.|..+|++++ |.. .+...+..+...+ + . +.+++||||||||||+||+++++.+ +..++.+
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 4566889877 543 3344444444331 1 2 5789999999999999999999987 8889999
Q ss_pred echhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 017161 234 IGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMA 313 (376)
Q Consensus 234 ~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~t 313 (376)
++.++...+.+.........|.......++||||||++.+.+ ....+..++.+++.+. ..+.. +|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------~~~~q~~l~~~l~~l~---~~~~~-iIit 233 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------KTGVQTELFHTFNELH---DSGKQ-IVIC 233 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------CHHHHHHHHHHHHHHH---TTTCE-EEEE
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------ChHHHHHHHHHHHHHH---HCCCe-EEEE
Confidence 998887665543332222234333333678999999999843 3356777777777653 23334 4455
Q ss_pred eCC-CCC---CCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccC--CCCCcccHHHHHHHCCCC
Q 017161 314 TNR-PDT---LDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTM--NCERDIRFELLARLCPNS 373 (376)
Q Consensus 314 Tn~-~~~---ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~~--~~~~~vdl~~lA~~t~g~ 373 (376)
|+. +.. ++++|++ ||. ..+.+++|+.++|..|++..+... .++++ .++.||..++|.
T Consensus 234 t~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~gn 298 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDDN 298 (440)
T ss_dssp ESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCSC
T ss_pred ECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCCC
Confidence 554 443 8899999 886 789999999999999999988643 34444 478899888763
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.72 E-value=8.2e-18 Score=181.55 Aligned_cols=189 Identities=22% Similarity=0.318 Sum_probs=128.9
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CC
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 228 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~ 228 (376)
.+...+.++++++|.++.++.+.+++.. ..+.+++|+||||||||++|+++|+.+ +.
T Consensus 161 ~~~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 227 (854)
T 1qvr_A 161 TRLAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGK 227 (854)
T ss_dssp HHHHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTC
T ss_pred HHHHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCC
Confidence 3455677899999999999999888754 345689999999999999999999987 78
Q ss_pred ceEEEechhhh--HhhhchhhHHHHHHHHHHHcC-CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 017161 229 CFIRVIGSELV--QKYVGEGARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR 305 (376)
Q Consensus 229 ~~i~v~~~el~--~~~~g~~~~~~~~lf~~a~~~-~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 305 (376)
+++.++++.+. ..+.|+....++.+|..+... .|+||||||+|.+.+.+.. .+..+..+.+..++. .
T Consensus 228 ~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~-------~ 297 (854)
T 1qvr_A 228 RIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALA-------R 297 (854)
T ss_dssp EEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH-------T
T ss_pred eEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHh-------C
Confidence 89999998886 467788888899999998874 7899999999999765422 123444555555553 3
Q ss_pred CCeEEEEEeCCCC----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccC----CCC-CcccHHHHHHHCCCC
Q 017161 306 GNIKVLMATNRPD----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTM----NCE-RDIRFELLARLCPNS 373 (376)
Q Consensus 306 ~~v~VI~tTn~~~----~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~----~~~-~~vdl~~lA~~t~g~ 373 (376)
+++.+|++||.++ .++++|+| ||+. +.|+.|+.+++.+||+.++..+ ++. .+..+..++.++.+|
T Consensus 298 ~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~ 371 (854)
T 1qvr_A 298 GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 (854)
T ss_dssp TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhh
Confidence 5677999998764 57999999 9985 9999999999999998776533 211 223456666665554
No 59
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.72 E-value=6.9e-17 Score=157.12 Aligned_cols=186 Identities=19% Similarity=0.197 Sum_probs=132.3
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEec
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIG 235 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~ 235 (376)
...++++|.++.++.+..++...+. ...+.+++|+||||||||++++++++.+ +..++.+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3447899999999999998864211 2456789999999999999999999987 788999997
Q ss_pred hhhhH------hh----------hch-hhHHHHHHHHHHHc-CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 017161 236 SELVQ------KY----------VGE-GARMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN 297 (376)
Q Consensus 236 ~el~~------~~----------~g~-~~~~~~~lf~~a~~-~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~ 297 (376)
..... .. .|. ....+..++..... ..|++|||||+|.+...+ ..+..+..++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~ 157 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITR 157 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhh
Confidence 65321 10 111 22234445555433 458899999999984321 14577777777
Q ss_pred HhcCCCCCCCeEEEEEeCCC---CCCCccccCCCCcce-EEEecCCCHHHHHHHHHHHhcc----CCCCCcccHHHHHHH
Q 017161 298 QLDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLARL 369 (376)
Q Consensus 298 ~ld~~~~~~~v~VI~tTn~~---~~ld~allr~gRfd~-~i~~~~Pd~~~r~~Il~~~~~~----~~~~~~vdl~~lA~~ 369 (376)
.+.......++.+|++||.+ +.+++++++ ||.. .+.|++|+.+++.+|++.++.. ..+.+ ..++.+++.
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~l~~~ 234 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP-DVVPLCAAL 234 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS-SHHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHH
Confidence 66543225678899999987 778999998 8875 8999999999999999988763 23333 346777777
Q ss_pred CC
Q 017161 370 CP 371 (376)
Q Consensus 370 t~ 371 (376)
+.
T Consensus 235 ~~ 236 (387)
T 2v1u_A 235 AA 236 (387)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.72 E-value=1.2e-17 Score=178.14 Aligned_cols=175 Identities=22% Similarity=0.304 Sum_probs=126.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------C
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------D 227 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~ 227 (376)
+.+...+-.+++++|.++.++.+.+++.. ....++||+||||||||++|+++|..+ +
T Consensus 170 l~~~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~ 236 (758)
T 3pxi_A 170 LTAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (758)
T ss_dssp HHHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred HHHHHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcC
Confidence 34556777899999999999999988864 345689999999999999999999986 7
Q ss_pred CceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC
Q 017161 228 ACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGN 307 (376)
Q Consensus 228 ~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 307 (376)
..++.+++ ..+|.|+.+..++.+|..+....++||||| + ..+.++.+... -..+.
T Consensus 237 ~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~-------l~~~~ 291 (758)
T 3pxi_A 237 KRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPS-------LARGE 291 (758)
T ss_dssp CCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCC-------TTSSS
T ss_pred CeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHH-------HhcCC
Confidence 78888777 566788888899999999999899999999 1 12233333222 23567
Q ss_pred eEEEEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-----CcccHHHHHHHCCCC
Q 017161 308 IKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-----RDIRFELLARLCPNS 373 (376)
Q Consensus 308 v~VI~tTn~~~-----~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-----~~vdl~~lA~~t~g~ 373 (376)
+.+|++||..+ .+|++++| || ..+.|+.|+.+++.+||+.+...+... .+..+..++.++.+|
T Consensus 292 v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~ 364 (758)
T 3pxi_A 292 LQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (758)
T ss_dssp CEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred EEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Confidence 99999999988 79999999 99 569999999999999999887664222 222355566555443
No 61
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=7.2e-17 Score=158.13 Aligned_cols=179 Identities=24% Similarity=0.259 Sum_probs=115.9
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhH-----------------hcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceE
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFV-----------------KLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~-----------------~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i 231 (376)
.|+|++.+++.|..++..++.+..... .-...++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999988853322221100 012245678999999999999999999999999999
Q ss_pred EEechhhh-Hhhhchh-hHHHHHHHHHHH----cCCCeEEEEcCCcccccCCCCCCCCC---CHHHHHHHHHHHHHhc-C
Q 017161 232 RVIGSELV-QKYVGEG-ARMVRELFQMAR----SKKACIVFFDEVDAIGGARFDDGVGG---DNEVQRTMLEIVNQLD-G 301 (376)
Q Consensus 232 ~v~~~el~-~~~~g~~-~~~~~~lf~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~---~~~~~~~l~~ll~~ld-~ 301 (376)
.+++..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+....... ...++..|+.+++... .
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 344555554432 23567999999999976643221111 2337777777776321 0
Q ss_pred C---------------CCCCCeEEEEEeCC-----------------------------------------CCCCCcccc
Q 017161 302 F---------------DARGNIKVLMATNR-----------------------------------------PDTLDPALL 325 (376)
Q Consensus 302 ~---------------~~~~~v~VI~tTn~-----------------------------------------~~~ld~all 325 (376)
+ -...++++|+++|. ...+.|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 11256778888872 113567777
Q ss_pred CCCCcceEEEecCCCHHHHHHHHH
Q 017161 326 RPGRLDRKVEFGLPDLESRTQIFK 349 (376)
Q Consensus 326 r~gRfd~~i~~~~Pd~~~r~~Il~ 349 (376)
+ ||+..+.|++++.++...|+.
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHh
Confidence 7 999999999999999999986
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=4e-17 Score=173.97 Aligned_cols=189 Identities=22% Similarity=0.298 Sum_probs=139.7
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CC
Q 017161 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DA 228 (376)
Q Consensus 159 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~ 228 (376)
.+...+-.|++++|.++.++.+.+.+.. ..+.++||+||||||||++|+++|..+ +.
T Consensus 177 ~~~~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~ 243 (758)
T 1r6b_X 177 NQLARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADC 243 (758)
T ss_dssp HHHHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTC
T ss_pred HHHHhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 3445566899999999999999988764 356789999999999999999999976 56
Q ss_pred ceEEEechhhh--HhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 017161 229 CFIRVIGSELV--QKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARG 306 (376)
Q Consensus 229 ~~i~v~~~el~--~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 306 (376)
.++.+++..+. ..+.|..+..++.+|..+....++||||||+|.+.+.+... .+..+..+ + +..+-..+
T Consensus 244 ~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~----~---L~~~l~~~ 314 (758)
T 1r6b_X 244 TIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAAN----L---IKPLLSSG 314 (758)
T ss_dssp EEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHH----H---HSSCSSSC
T ss_pred EEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHH----H---HHHHHhCC
Confidence 67777777766 35778888889999999988788999999999997654221 11222222 2 22333457
Q ss_pred CeEEEEEeCCC-----CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc------CCCCCcccHHHHHHHCCCC
Q 017161 307 NIKVLMATNRP-----DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT------MNCERDIRFELLARLCPNS 373 (376)
Q Consensus 307 ~v~VI~tTn~~-----~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~------~~~~~~vdl~~lA~~t~g~ 373 (376)
++.+|++||.+ -.+|++|.+ ||+ .+.|+.|+.+++.+||+.+... +.+. +..+..++..+.+|
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKY 388 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHH
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhh
Confidence 78899999864 357899999 997 7999999999999999887654 2222 22355666665554
No 63
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.2e-17 Score=158.19 Aligned_cols=160 Identities=8% Similarity=0.067 Sum_probs=120.0
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----------CCceEEEechhhh
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----------DACFIRVIGSELV 239 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----------~~~~i~v~~~el~ 239 (376)
|.|.++++..|..++... +.-..+.+++||||||||||++++++++++ ...++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~---------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS---------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHH---------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 778888888888877642 223568899999999999999999999987 3467889986643
Q ss_pred H----------hhh------chhhHHHHHHHHHH--HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcC
Q 017161 240 Q----------KYV------GEGARMVRELFQMA--RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (376)
Q Consensus 240 ~----------~~~------g~~~~~~~~lf~~a--~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~ 301 (376)
. ... +.....++..|... ....+.||||||+|.+. .++.|..+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc-
Confidence 2 222 22455677788764 35678899999999995 1456666665432
Q ss_pred CCCCCCeEEEEEeCCCCC----CCccccCCCCcc-eEEEecCCCHHHHHHHHHHHhccC
Q 017161 302 FDARGNIKVLMATNRPDT----LDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRTM 355 (376)
Q Consensus 302 ~~~~~~v~VI~tTn~~~~----ld~allr~gRfd-~~i~~~~Pd~~~r~~Il~~~~~~~ 355 (376)
....++.||+++|..+. |++++++ ||. ..|.|++++.++..+|++..++..
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 24567999999998765 3455566 886 689999999999999999988664
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=1.4e-16 Score=155.35 Aligned_cols=179 Identities=21% Similarity=0.267 Sum_probs=128.5
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc-----------CCceEEEech
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT-----------DACFIRVIGS 236 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l-----------~~~~i~v~~~ 236 (376)
++++|.++.++.+.+++..... -..+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6799999999999988864211 1456789999999999999999999987 8899999977
Q ss_pred hhh-H----------hh-------hchh-hHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHH-HHHHH
Q 017161 237 ELV-Q----------KY-------VGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRT-MLEIV 296 (376)
Q Consensus 237 el~-~----------~~-------~g~~-~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~-l~~ll 296 (376)
... . .. .+.. ...+..++..+....+ ||||||+|.+.... .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHHh
Confidence 643 1 11 0111 2334455555544444 99999999985421 1233 33443
Q ss_pred HHhcCCCCCCCeEEEEEeCCC---CCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc----CCCCCcccHHHHHHH
Q 017161 297 NQLDGFDARGNIKVLMATNRP---DTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLARL 369 (376)
Q Consensus 297 ~~ld~~~~~~~v~VI~tTn~~---~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~----~~~~~~vdl~~lA~~ 369 (376)
... .++.||++||.+ +.+++++++ ||...+.|++|+.++..+|++.++.. ..++ +..++.+++.
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHH
Confidence 322 678999999987 678999988 88789999999999999999998763 2333 3346778887
Q ss_pred CCCCCC
Q 017161 370 CPNSTG 375 (376)
Q Consensus 370 t~g~sG 375 (376)
+.+.+|
T Consensus 231 ~~~~~G 236 (384)
T 2qby_B 231 SAKEHG 236 (384)
T ss_dssp HHTTCC
T ss_pred HHhccC
Confidence 764433
No 65
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.68 E-value=2.6e-16 Score=152.87 Aligned_cols=179 Identities=21% Similarity=0.285 Sum_probs=133.7
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc--------
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC-------- 229 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~-------- 229 (376)
+.+++.+.+|++++|.+..++.|..++.. + ..+..++|+||+|||||++|+++|+.++..
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 45678888999999999999999998864 1 334578999999999999999999987542
Q ss_pred ----------------eEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHH
Q 017161 230 ----------------FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289 (376)
Q Consensus 230 ----------------~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~ 289 (376)
++.++... ......++.++..+.. ..+.||+|||+|.+ +...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~ 136 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSF 136 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CHHHH
T ss_pred cccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchh-----------cHHHH
Confidence 22222211 0112235566665542 34689999999998 55666
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 017161 290 RTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLAR 368 (376)
Q Consensus 290 ~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~ 368 (376)
+.+..+++. ...++++|++|+.+..+.+++++ |+ ..+.|++|+.++...+++.+++..++. .+..+..|++
T Consensus 137 ~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~ 208 (373)
T 1jr3_A 137 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 (373)
T ss_dssp HHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 777666653 35678899999999999999998 77 789999999999999999988765543 2234677888
Q ss_pred HCCCC
Q 017161 369 LCPNS 373 (376)
Q Consensus 369 ~t~g~ 373 (376)
.+.|.
T Consensus 209 ~~~G~ 213 (373)
T 1jr3_A 209 AAEGS 213 (373)
T ss_dssp HSSSC
T ss_pred HCCCC
Confidence 88774
No 66
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.68 E-value=3.8e-16 Score=150.57 Aligned_cols=164 Identities=18% Similarity=0.280 Sum_probs=107.8
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC-------c---
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-------C--- 229 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~-------~--- 229 (376)
...++.+|++++|.+..++.+...... ..+.++||+||||||||++|+++|+.++. +
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~ 82 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSS 82 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccc
Confidence 445778999999999977765444322 12346999999999999999999998763 2
Q ss_pred -----------------------eEEEechhhhHhhhchhhHHHHHHHHHH---------HcCCCeEEEEcCCcccccCC
Q 017161 230 -----------------------FIRVIGSELVQKYVGEGARMVRELFQMA---------RSKKACIVFFDEVDAIGGAR 277 (376)
Q Consensus 230 -----------------------~i~v~~~el~~~~~g~~~~~~~~lf~~a---------~~~~psIl~iDEiD~l~~~r 277 (376)
++.+..........|... +...+... ....+++|||||+|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l---- 156 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLL---- 156 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS----
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhC----
Confidence 221111111111122100 01111111 0113579999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh----cCCC----CCCCeEEEEEeCCCC-CCCccccCCCCcceEEEecCC-CHHHHHHH
Q 017161 278 FDDGVGGDNEVQRTMLEIVNQL----DGFD----ARGNIKVLMATNRPD-TLDPALLRPGRLDRKVEFGLP-DLESRTQI 347 (376)
Q Consensus 278 ~~~~~~~~~~~~~~l~~ll~~l----d~~~----~~~~v~VI~tTn~~~-~ld~allr~gRfd~~i~~~~P-d~~~r~~I 347 (376)
....+..|+++++.- .... ...++.+|+|||..+ .++++|++ ||+..+.++.| +.+.+.+|
T Consensus 157 -------~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 157 -------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp -------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred -------CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 677888888888762 1110 123788999999754 89999999 99999999999 67788788
Q ss_pred HHHH
Q 017161 348 FKIH 351 (376)
Q Consensus 348 l~~~ 351 (376)
++.+
T Consensus 228 l~~~ 231 (350)
T 1g8p_A 228 IRRR 231 (350)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8663
No 67
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.67 E-value=4.2e-16 Score=141.50 Aligned_cols=173 Identities=13% Similarity=0.170 Sum_probs=120.9
Q ss_pred CCCCcccccC---cHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEech
Q 017161 163 PDVTYNDVGG---CKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS 236 (376)
Q Consensus 163 ~~~~~~di~G---~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~ 236 (376)
|..+|++++| ...+++.++.++.. ..+.+++|+||||||||++|+++++.+ +..++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4468888886 34677777766653 246789999999999999999999976 4778888888
Q ss_pred hhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 237 ELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 237 el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
++...+... +.. ...+.+|||||++.+.. ....+..+..+++... ..+.+.+|++||.
T Consensus 90 ~~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~---~~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LEG--LEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVA---EQKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GTT--GGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHH---HHCSCEEEEEESS
T ss_pred HHHHHHHHH--------HHh--ccCCCEEEEeccccccC---------CHHHHHHHHHHHHHHH---HcCCCeEEEEcCC
Confidence 765433211 111 13467999999999833 3334666777766542 1233435555554
Q ss_pred -CC---CCCccccCCCCcc--eEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 317 -PD---TLDPALLRPGRLD--RKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 317 -~~---~ld~allr~gRfd--~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
+. .+++++.+ ||. ..+.+++|+.+++.+++..+++..++. .+..++.|++.++|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 33 45688888 776 899999999999999999988755433 23346778888876
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=1.7e-15 Score=146.36 Aligned_cols=179 Identities=26% Similarity=0.327 Sum_probs=132.2
Q ss_pred cccccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC-----c
Q 017161 155 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA-----C 229 (376)
Q Consensus 155 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~-----~ 229 (376)
...|++++++.+|+++.|++.+++.|..++.. | ..+ +++|+||||||||++|+++|+.+.. .
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 45788999999999999999999999988864 2 222 4999999999999999999998632 3
Q ss_pred eEEEechhhhHhhhchhhHHHHHHHHHHH------cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 017161 230 FIRVIGSELVQKYVGEGARMVRELFQMAR------SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (376)
Q Consensus 230 ~i~v~~~el~~~~~g~~~~~~~~lf~~a~------~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 303 (376)
+..++.++.. +...+++.+.... ...+.|++|||+|.+ ....++.|..+++..
T Consensus 79 ~~~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~---- 137 (340)
T 1sxj_C 79 VLELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----------TNAAQNALRRVIERY---- 137 (340)
T ss_dssp EEEECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHT----
T ss_pred EEEEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhcC----
Confidence 5555554321 1223333333222 123679999999998 556778888777763
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc--CCCCCcccHHHHHHHCCC
Q 017161 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT--MNCERDIRFELLARLCPN 372 (376)
Q Consensus 304 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~--~~~~~~vdl~~lA~~t~g 372 (376)
..++.+|++||.+..+.+++++ |+. .+.|+.++.++..+++...++. +.+.+ ..+..++..+.|
T Consensus 138 -~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~-~~~~~i~~~s~G 203 (340)
T 1sxj_C 138 -TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSP-NAEKALIELSNG 203 (340)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCH-HHHHHHHHHHTT
T ss_pred -CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC
Confidence 4567788999999999999999 884 7899999999999999888843 34432 345667776655
No 69
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.66 E-value=2.6e-16 Score=151.27 Aligned_cols=164 Identities=21% Similarity=0.219 Sum_probs=117.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh--h
Q 017161 162 KPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL--V 239 (376)
Q Consensus 162 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el--~ 239 (376)
..+..+++++|.+++++.+..++.. +.++||+||||||||++|+++|+.++.+++.+++... .
T Consensus 21 ~~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~ 85 (331)
T 2r44_A 21 VIDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLP 85 (331)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCH
T ss_pred HHHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCCh
Confidence 3344567899999999888877653 3589999999999999999999999999999887321 1
Q ss_pred HhhhchhhH-HHHHHHHHHHcC--CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc----C--CCCCCCeEE
Q 017161 240 QKYVGEGAR-MVRELFQMARSK--KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----G--FDARGNIKV 310 (376)
Q Consensus 240 ~~~~g~~~~-~~~~lf~~a~~~--~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld----~--~~~~~~v~V 310 (376)
....|.... .....|. ...+ ..+|+||||++.+ +...+..+++.+++.. + .....+++|
T Consensus 86 ~~l~g~~~~~~~~~~~~-~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 86 SDLIGTMIYNQHKGNFE-VKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp HHHHEEEEEETTTTEEE-EEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred hhcCCceeecCCCCceE-eccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 111111100 0000000 0000 1269999999997 6778888888887632 1 112346788
Q ss_pred EEEeCCCC-----CCCccccCCCCcceEEEecCCCHHHHHHHHHHHhcc
Q 017161 311 LMATNRPD-----TLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 311 I~tTn~~~-----~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
|+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++.++..
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 88888543 38999999 99989999999999999999998765
No 70
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.64 E-value=6.8e-15 Score=142.05 Aligned_cols=187 Identities=21% Similarity=0.297 Sum_probs=131.3
Q ss_pred ccccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 158 TVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 158 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
+++...+.++++++|.+.+++.+...+... ...-.++.+++|+||||||||||++++|+.++.++...+++.
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~--------~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAA--------KMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHH--------HHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHH--------HhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 445556668999999999999888777531 001135578999999999999999999999998887776654
Q ss_pred hhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc-------CCC------C
Q 017161 238 LVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-------GFD------A 304 (376)
Q Consensus 238 l~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld-------~~~------~ 304 (376)
+.. ...+..++.. ...+.|+||||++.+ ...++..+...+.... +.. .
T Consensus 87 ~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l-----------~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 87 LVK------QGDMAAILTS--LERGDVLFIDEIHRL-----------NKAVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp CCS------HHHHHHHHHH--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCCCC--------------
T ss_pred hcC------HHHHHHHHHH--ccCCCEEEEcchhhc-----------CHHHHHHHHHHHHhcccceeeccCccccccccc
Confidence 321 1122223222 234579999999998 3345555555443221 000 0
Q ss_pred CCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCC
Q 017161 305 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCER-DIRFELLARLCPNS 373 (376)
Q Consensus 305 ~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~-~vdl~~lA~~t~g~ 373 (376)
...+.++++|+.+..|++.+++ ||...+.+++|+.+++.+|++...+..++.- +..+..||+++.|.
T Consensus 148 l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~ 215 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT 215 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC
T ss_pred CCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC
Confidence 1246778899999999999999 9988999999999999999999887665542 23467888888764
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.62 E-value=1e-15 Score=165.27 Aligned_cols=166 Identities=26% Similarity=0.411 Sum_probs=123.2
Q ss_pred cccccCcHHHHHHHHHHhhcccCchhhhHhcCCC----CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhh
Q 017161 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGID----PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV 239 (376)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~----~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~ 239 (376)
+++|+|++.+++.+...+.. ...|+. |..++||+||||||||++|+++|..+ +.+|+.++|+++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~--------~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRR--------ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHH--------HGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 45799999999999999875 222322 22479999999999999999999988 7899999998765
Q ss_pred Hh-----hhchhhHH-----HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCC-----
Q 017161 240 QK-----YVGEGARM-----VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDA----- 304 (376)
Q Consensus 240 ~~-----~~g~~~~~-----~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~----- 304 (376)
.. .+|..... .+.+....+...+++|||||+|.+ +.++++.|+++++...-...
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp SSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCE
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEe
Confidence 43 12211111 123444455566789999999988 78889999888875321111
Q ss_pred -CCCeEEEEEeCC--------------------------CCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 017161 305 -RGNIKVLMATNR--------------------------PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 305 -~~~v~VI~tTn~--------------------------~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
-.+++||+|||. ...+.|+|++ ||+..+.|.+|+.++...|++.++.
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 137889999997 2356788888 9999999999999999999988875
No 72
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=6.6e-15 Score=142.87 Aligned_cols=184 Identities=20% Similarity=0.275 Sum_probs=125.7
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc------CCceEEEechhh
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------DACFIRVIGSEL 238 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l------~~~~i~v~~~el 238 (376)
...++++|.++.++.|.+++...+. -..+..++|+||+|||||+|++++++.+ +..++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3447899999999999988864211 1456789999999999999999999987 788999987643
Q ss_pred hH------hh----------hch-hhHHHHHHHHHHHcC-CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc
Q 017161 239 VQ------KY----------VGE-GARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD 300 (376)
Q Consensus 239 ~~------~~----------~g~-~~~~~~~lf~~a~~~-~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 300 (376)
.. .. .+. .......++...... .|.+|+|||++.+.... +. ..+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~---~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------ND---DILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CS---THHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cC---HHHHHHhhchh
Confidence 21 11 111 222344455555443 48999999999986432 12 23444444443
Q ss_pred CCCCCCCeEEEEEeCCC---CCCCccccCCCCcc-eEEEecCCCHHHHHHHHHHHhcc----CCCCCcccHHHHHHHCC
Q 017161 301 GFDARGNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLESRTQIFKIHTRT----MNCERDIRFELLARLCP 371 (376)
Q Consensus 301 ~~~~~~~v~VI~tTn~~---~~ld~allr~gRfd-~~i~~~~Pd~~~r~~Il~~~~~~----~~~~~~vdl~~lA~~t~ 371 (376)
.. ...++.+|++||.+ ..+++.+.+ ||. +.+.+++++.++..+++..++.. ..+. +-.+..+++.+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~ 232 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAA 232 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHH
Confidence 32 34578899999986 467888887 665 59999999999999999987653 2222 223556666655
No 73
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.61 E-value=1.6e-15 Score=128.91 Aligned_cols=112 Identities=16% Similarity=0.252 Sum_probs=85.6
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhch
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGE 245 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~ 245 (376)
+++|.+..++.+.+.+... ...+.++||+||||||||++|+++++.. +.+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5889999999999888641 2345689999999999999999999976 77899 999876543
Q ss_pred hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 246 GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 246 ~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
......|..+.. ++|||||||.+ +.+.|..++.++.. ...++.+|+|||.+
T Consensus 66 --~~~~~~~~~a~~---g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQG---GTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTT---SCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCC---cEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcC
Confidence 223445666643 59999999998 67788888887732 24467799999974
No 74
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.60 E-value=4.8e-16 Score=131.87 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=87.4
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhH
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGAR 248 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~ 248 (376)
+++|.+++++.+++.+... ...+.++||+||||||||++|+++++... +|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 4889999999999988652 13456799999999999999999999888 99999998875543
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 249 ~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
...+|..+. .++|||||+|.+ ..+.+..++++++... ..++.+|+|||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 345566554 359999999998 6778888888887653 4568899999864
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.59 E-value=7.4e-15 Score=136.67 Aligned_cols=161 Identities=22% Similarity=0.235 Sum_probs=102.2
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC---CceEEEechhhhHh
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQK 241 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~---~~~i~v~~~el~~~ 241 (376)
.+|++++|.+..++.+.+.+... ...+.++||+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 47889999999999998887652 12357899999999999999999999874 68999999876432
Q ss_pred h-----hchhhHH-------HHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc----C--CC
Q 017161 242 Y-----VGEGARM-------VRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----G--FD 303 (376)
Q Consensus 242 ~-----~g~~~~~-------~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld----~--~~ 303 (376)
. .|..... ....+..+ ..++|||||++.+ +.+.+..|+++++... + ..
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCccc
Confidence 1 1211000 01123322 3469999999998 6778888888887531 0 01
Q ss_pred CCCCeEEEEEeCCC-------CCCCccccCCCCcce-EEEecCCCH--HHHHHHHHHHh
Q 017161 304 ARGNIKVLMATNRP-------DTLDPALLRPGRLDR-KVEFGLPDL--ESRTQIFKIHT 352 (376)
Q Consensus 304 ~~~~v~VI~tTn~~-------~~ld~allr~gRfd~-~i~~~~Pd~--~~r~~Il~~~~ 352 (376)
...++.||+|||.. ..+.++|++ ||.. .+.+|+.+. ++...+++.++
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 12468899999984 357788888 8853 444444432 34444444443
No 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=7.4e-15 Score=143.12 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=125.6
Q ss_pred CcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCC--ceeeecCCCChHHHHHHHHHHhc----CCceEEEechhhh
Q 017161 166 TYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPK--GVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELV 239 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~--~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~~el~ 239 (376)
.+++++|.++.++.+..++..... + ..+. +++|+||||||||++++++++.+ +..++.+++....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 347799999999999998865211 1 2334 79999999999999999999988 5678888865532
Q ss_pred H------hh---h-------ch-hhHHHHHHHHHHH-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcC
Q 017161 240 Q------KY---V-------GE-GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDG 301 (376)
Q Consensus 240 ~------~~---~-------g~-~~~~~~~lf~~a~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~ 301 (376)
. .. . +. .......+..... ...|.||+|||+|.+ +...+..+..++..+..
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCC
Confidence 1 10 0 11 1122222322222 355889999999998 45555665555533210
Q ss_pred CCCCCCeEEEEEeCCC---CCCCccccCCCCcce-EEEecCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHHCC
Q 017161 302 FDARGNIKVLMATNRP---DTLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRTM---NCERDIRFELLARLCP 371 (376)
Q Consensus 302 ~~~~~~v~VI~tTn~~---~~ld~allr~gRfd~-~i~~~~Pd~~~r~~Il~~~~~~~---~~~~~vdl~~lA~~t~ 371 (376)
....++.||++||.+ +.+++.+.+ ||.. .+.|++++.++..+++...+... ..-.+..++.+++.+.
T Consensus 155 -~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 155 -LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp -HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred -CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 001578899999987 678888887 8765 89999999999999999887641 1123345678888883
No 77
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.55 E-value=3.4e-15 Score=168.18 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=112.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCc----------hhhhHh------cCCC----------CCCc--eeeecCCC
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLH----------PEKFVK------LGID----------PPKG--VLCYGPPG 212 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~----------~~~~~~------~g~~----------~~~~--vLL~GppG 212 (376)
..+.++|++|+|+++.++.+.+.+.+|+.+ ++.|+. .|+. +|+| +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 345589999999999999999999998854 667776 5554 4555 99999999
Q ss_pred ChHHHHHHHHHHhc---CCceEEEechhhh------------Hhhhch----hhHHHHHHHHHHHcCCCeEEEEcCCccc
Q 017161 213 TGKTLLARAVANRT---DACFIRVIGSELV------------QKYVGE----GARMVRELFQMARSKKACIVFFDEVDAI 273 (376)
Q Consensus 213 tGKT~LakalA~~l---~~~~i~v~~~el~------------~~~~g~----~~~~~~~lf~~a~~~~psIl~iDEiD~l 273 (376)
||||+||+++|.+. +.+.+.|+..+.. ++++++ +++.++.+|..|+...||+||+|+++++
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999865 5566666665533 556677 8899999999999999999999999999
Q ss_pred ccCCC---CCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 274 GGARF---DDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 274 ~~~r~---~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
++.+. +.+.....-..+.+.++|.++++.....+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 98843 221111233455689999999987777788777 77763
No 78
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.53 E-value=1.7e-14 Score=146.41 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=102.8
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC--CceEEEechh-hhHhhhch
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSE-LVQKYVGE 245 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~--~~~i~v~~~e-l~~~~~g~ 245 (376)
.|+|.+++++.+..++.. ..++||+||||||||++|+++|+.++ .+|..+.+.. .....+|.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 488999998887766643 35899999999999999999999884 3555555432 11222221
Q ss_pred --hhHH-HHHHHHHHHcC---CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc----CCC-CCCCeEEEEEe
Q 017161 246 --GARM-VRELFQMARSK---KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD----GFD-ARGNIKVLMAT 314 (376)
Q Consensus 246 --~~~~-~~~lf~~a~~~---~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld----~~~-~~~~v~VI~tT 314 (376)
.... -...|..+..+ .++|||||||+.+ ++..+..|++++++-. |.. ..+..++|+||
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~AT 156 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAAS 156 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhcc
Confidence 1000 01223222222 4679999999886 7788888888887421 211 11223568888
Q ss_pred CCCCC---CCccccCCCCcceEEEecCCCH-HHHHHHHHHHh
Q 017161 315 NRPDT---LDPALLRPGRLDRKVEFGLPDL-ESRTQIFKIHT 352 (376)
Q Consensus 315 n~~~~---ld~allr~gRfd~~i~~~~Pd~-~~r~~Il~~~~ 352 (376)
|.+.. +.+++++ ||...+.+++|+. +++..|++.+.
T Consensus 157 N~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 157 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp SSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred ccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 86422 4468999 9999999999987 78889997765
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.52 E-value=2.6e-13 Score=130.89 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=117.3
Q ss_pred CcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCc----------------------
Q 017161 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDAC---------------------- 229 (376)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~---------------------- 229 (376)
-+.+.++.+...+.. | +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 6 w~~~~~~~l~~~i~~-----------~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-----------G-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHT-----------T-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHc-----------C-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 456777777777754 1 445679999999999999999999987532
Q ss_pred --eEEEechhhhHhhhchhhHHHHHHHHHHHc----CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 017161 230 --FIRVIGSELVQKYVGEGARMVRELFQMARS----KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD 303 (376)
Q Consensus 230 --~i~v~~~el~~~~~g~~~~~~~~lf~~a~~----~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 303 (376)
++.+...+- ....+...++++++.+.. ..+.|++|||+|.+ +.+.++.|+..+++
T Consensus 74 ~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~lEe----- 134 (334)
T 1a5t_A 74 PDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTLEE----- 134 (334)
T ss_dssp TTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHHTS-----
T ss_pred CCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHhcC-----
Confidence 222322100 001123456777776643 34679999999998 55566666655542
Q ss_pred CCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 017161 304 ARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 373 (376)
Q Consensus 304 ~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~ 373 (376)
+..++++|++||.++.+.|++++ |+ ..+.|++|+.++..+++.... .+ .+..+..+++.+.|.
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~ 197 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGS 197 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTC
T ss_pred CCCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCC
Confidence 45678999999999999999999 87 579999999999999998775 22 233567788887764
No 80
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.51 E-value=3.6e-14 Score=135.39 Aligned_cols=157 Identities=20% Similarity=0.303 Sum_probs=105.6
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh--
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY-- 242 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~-- 242 (376)
++++|.+..++.+.+.+... ...+.++||+||||||||++|+++++.+ +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 35899999999999888652 2446789999999999999999999965 6789999988764321
Q ss_pred ---hchhh-------HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCC------CCCC
Q 017161 243 ---VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGF------DARG 306 (376)
Q Consensus 243 ---~g~~~-------~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~------~~~~ 306 (376)
+|... ......|..+. .++||||||+.+ ....+..|+.+++...-. ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 12100 01123455554 359999999998 667888888888753210 1124
Q ss_pred CeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHH----HHHHHHHHHh
Q 017161 307 NIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLE----SRTQIFKIHT 352 (376)
Q Consensus 307 ~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~----~r~~Il~~~~ 352 (376)
++.||+|||.. ..++++|.. ||. .+.+..|+.. +...+++.++
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l 190 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFL 190 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHH
Confidence 68899999975 245666776 774 4444455544 4444555544
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=4.7e-13 Score=127.72 Aligned_cols=142 Identities=12% Similarity=0.169 Sum_probs=108.3
Q ss_pred CcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc------CCceEEEechhhhHhhhch
Q 017161 172 GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT------DACFIRVIGSELVQKYVGE 245 (376)
Q Consensus 172 G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l------~~~~i~v~~~el~~~~~g~ 245 (376)
|++++++.|+..+.. | + ...+|||||||+|||++|+++|+.+ ...++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 677788888888865 2 2 4579999999999999999999863 346666665320 12
Q ss_pred hhHHHHHHHHHHHcC----CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 017161 246 GARMVRELFQMARSK----KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321 (376)
Q Consensus 246 ~~~~~~~lf~~a~~~----~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld 321 (376)
+...+++++..+... ...|+||||+|.+ +.+.++.|+..+++ +..++++|++|+.+..+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALEE-----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHHS-----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChHhCh
Confidence 334577777777543 2469999999999 56677777777764 467888999999999999
Q ss_pred ccccCCCCcceEEEecCCCHHHHHHHHHHHh
Q 017161 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHT 352 (376)
Q Consensus 322 ~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~ 352 (376)
|++++ | .+.|++|+.++..++++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 88999999999999998776
No 82
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.45 E-value=2.9e-13 Score=109.27 Aligned_cols=103 Identities=24% Similarity=0.381 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCCCCccchhhhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEE
Q 017161 36 TSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFV 115 (376)
Q Consensus 36 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (376)
.+.++|+.++++++.+++.++ ++....+++|+.||+|.++++++ +++|+.+++++|+
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lk-------------------eel~~L~~~P~~Vg~v~e~~d~~----~~iVk~s~g~~~~ 63 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLE-------------------NEVARLRSPPLLVGVVSDILEDG----RVVVKSSTGPKFV 63 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHH-------------------HHHHHHHSCCEEEEEEEEECTTS----CEEEEETTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHhCCCceEEEEEEEecCC----EEEEEeCCCCEEE
Confidence 455666666666666665544 22333468999999999999864 6999999999999
Q ss_pred EecCCCCCCCCCCCCceeeeccccceeccCCCCCCCCccccccccc
Q 017161 116 VGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEE 161 (376)
Q Consensus 116 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (376)
|++...++...|+||++|+++..++++...||+++||+++.|.+++
T Consensus 64 V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~vee 109 (109)
T 2wg5_A 64 VNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109 (109)
T ss_dssp ECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC--------------
T ss_pred EEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEecC
Confidence 9999999999999999999999999999999999999999998753
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.41 E-value=7.2e-13 Score=115.97 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=86.1
Q ss_pred cCCCCCcccccCc----HHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----CCceEE
Q 017161 161 EKPDVTYNDVGGC----KEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIR 232 (376)
Q Consensus 161 ~~~~~~~~di~G~----~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~ 232 (376)
++.+.+|+++.+. ..+++.+++++. ++.+..+.+++|+||||||||+|++++++.+ +..++.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 3456688888763 344444444443 3344557889999999999999999999876 667777
Q ss_pred EechhhhHhhhchhhH-HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 017161 233 VIGSELVQKYVGEGAR-MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (376)
Q Consensus 233 v~~~el~~~~~g~~~~-~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI 311 (376)
++..++...+...... ....++... ..|.+|+|||++... .++..+..+.++++... ..+..+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii 137 (180)
T 3ec2_A 73 FDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTI 137 (180)
T ss_dssp EEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEE
T ss_pred EEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEE
Confidence 8888776554321110 001122222 256799999998542 26677778888887653 2345688
Q ss_pred EEeCCCC
Q 017161 312 MATNRPD 318 (376)
Q Consensus 312 ~tTn~~~ 318 (376)
+|||.+.
T Consensus 138 ~tsn~~~ 144 (180)
T 3ec2_A 138 ITTNYSL 144 (180)
T ss_dssp EECCCCS
T ss_pred EEcCCCh
Confidence 8888753
No 84
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=1e-13 Score=143.75 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=103.8
Q ss_pred cccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEe----chhhhHhh--
Q 017161 169 DVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI----GSELVQKY-- 242 (376)
Q Consensus 169 di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~----~~el~~~~-- 242 (376)
.|.|++.+++.+.-++.. .++.......+....++||+||||||||+||+++|+.++..++... +..+....
T Consensus 296 ~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 477888776665333321 1000000112233448999999999999999999998865544321 12221111
Q ss_pred ---hchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc------CC--CCCCCeEEE
Q 017161 243 ---VGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD------GF--DARGNIKVL 311 (376)
Q Consensus 243 ---~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~VI 311 (376)
.|... .....+..|. .+|+||||||.+ +++.+..|+++|++-. |. ....++.||
T Consensus 374 ~~~~g~~~-~~~G~l~~A~---~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLAD---GGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCS-EEECHHHHHS---SSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cccccccc-ccCCeeEecC---CCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 11100 0011233332 359999999998 6678888888887532 11 123468899
Q ss_pred EEeCCCC-------------CCCccccCCCCcce-EEEecCCCHHHHHHHHHHHhcc
Q 017161 312 MATNRPD-------------TLDPALLRPGRLDR-KVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 312 ~tTn~~~-------------~ld~allr~gRfd~-~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
+|||... .++++|++ |||. .+..+.|+.+ ...|.+..++.
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9999886 89999999 9985 5566777777 88888776654
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.31 E-value=2.1e-11 Score=119.60 Aligned_cols=189 Identities=14% Similarity=0.149 Sum_probs=118.9
Q ss_pred CcccccCcHHHHHHHHHHh-hcccCchhhhHhcCC-CCCCceee--ecCCCChHHHHHHHHHHhc---------CCceEE
Q 017161 166 TYNDVGGCKEQIEKMREVV-ELPMLHPEKFVKLGI-DPPKGVLC--YGPPGTGKTLLARAVANRT---------DACFIR 232 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i-~~~l~~~~~~~~~g~-~~~~~vLL--~GppGtGKT~LakalA~~l---------~~~~i~ 232 (376)
..+.++|.++.++.|.+++ ..... +. ..+..++| +||+|+|||+|++++++.+ +..++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3467999999999999888 53111 11 23557999 9999999999999999876 456777
Q ss_pred Eechh------hhHhh---hc-------h-hhHHHHHHHHHHH-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHH
Q 017161 233 VIGSE------LVQKY---VG-------E-GARMVRELFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLE 294 (376)
Q Consensus 233 v~~~e------l~~~~---~g-------~-~~~~~~~lf~~a~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ 294 (376)
+++.. +.... .+ . .......+..... ...|.+|+|||+|.+...+. .+.+....+..
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~~ 166 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLLR 166 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHHH
Confidence 87643 11111 11 1 1122223332222 35688999999999854210 13444444555
Q ss_pred HHHHhcCCCCC--CCeEEEEEeCCCC---CCC---ccccCCCCcceEEEecCCCHHHHHHHHHHHhccCC---CCCcccH
Q 017161 295 IVNQLDGFDAR--GNIKVLMATNRPD---TLD---PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMN---CERDIRF 363 (376)
Q Consensus 295 ll~~ld~~~~~--~~v~VI~tTn~~~---~ld---~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~---~~~~vdl 363 (376)
++..+. ... .++.+|++||.++ .++ +.+.+ ++...+.+++++.++..+++...+.... ...+..+
T Consensus 167 ~~~~~~--~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 167 VHEEIP--SRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HHHHSC--CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHhcc--cCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 554432 012 5788898888664 334 55666 5655699999999999999987764211 1123346
Q ss_pred HHHHHHCC
Q 017161 364 ELLARLCP 371 (376)
Q Consensus 364 ~~lA~~t~ 371 (376)
..+++.|.
T Consensus 243 ~~i~~~~~ 250 (412)
T 1w5s_A 243 ELISDVYG 250 (412)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 67777777
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.29 E-value=1.4e-11 Score=144.47 Aligned_cols=139 Identities=21% Similarity=0.360 Sum_probs=98.4
Q ss_pred CCCceeeecCCCChHHHHHHH-HHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHH---------------cCCCeE
Q 017161 201 PPKGVLCYGPPGTGKTLLARA-VANRTDACFIRVIGSELVQKYVGEGARMVRELFQMAR---------------SKKACI 264 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~Laka-lA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~---------------~~~psI 264 (376)
..+++||+||||||||++|+. ++...+..++.++++.... ...+...+.... .+.++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 457899999999999999955 4544467777888765432 122333333321 234579
Q ss_pred EEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC--------CCeEEEEEeCCCC-----CCCccccCCCCcc
Q 017161 265 VFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDAR--------GNIKVLMATNRPD-----TLDPALLRPGRLD 331 (376)
Q Consensus 265 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~--------~~v~VI~tTn~~~-----~ld~allr~gRfd 331 (376)
|||||++.....+. +.......+.++++ ..|+... .++.+|+|+|++. .|+++++| ||
T Consensus 1340 lFiDEinmp~~d~y-----g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDKY-----GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEEETTTCSCCCSS-----SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred EEeccccccccccc-----CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 99999997644432 23445666666664 3333221 2589999999984 89999999 99
Q ss_pred eEEEecCCCHHHHHHHHHHHhcc
Q 017161 332 RKVEFGLPDLESRTQIFKIHTRT 354 (376)
Q Consensus 332 ~~i~~~~Pd~~~r~~Il~~~~~~ 354 (376)
..+.++.|+.+++..|+..+++.
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999988754
No 87
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.24 E-value=1.3e-11 Score=128.17 Aligned_cols=53 Identities=30% Similarity=0.472 Sum_probs=46.0
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
.+.++..|++++|.+.+++.+...+.. ..+++|+||||||||++|+++|+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 356778899999999999988888753 35899999999999999999999874
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.23 E-value=5.8e-10 Score=106.46 Aligned_cols=186 Identities=21% Similarity=0.238 Sum_probs=116.8
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
...|....+.++|.+..++.|.+++.. | ..++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 4 ~~~~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~ 66 (350)
T 2qen_A 4 DLRPKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELY 66 (350)
T ss_dssp CCSCCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHH
T ss_pred CCCCCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccc
Confidence 344555566799999999999988853 2 5799999999999999999999875 6666654331
Q ss_pred ------------Hhh---hch-----------------h----hHHHHHHH----HHHHcCCCeEEEEcCCcccccCCCC
Q 017161 240 ------------QKY---VGE-----------------G----ARMVRELF----QMARSKKACIVFFDEVDAIGGARFD 279 (376)
Q Consensus 240 ------------~~~---~g~-----------------~----~~~~~~lf----~~a~~~~psIl~iDEiD~l~~~r~~ 279 (376)
..+ .+. . ...+..++ ..+....|.+|+|||++.+....
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~-- 144 (350)
T 2qen_A 67 AERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG-- 144 (350)
T ss_dssp HTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT--
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC--
Confidence 100 000 0 01122222 22322238899999999984310
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC---------CCCccccCCCCcceEEEecCCCHHHHHHHHHH
Q 017161 280 DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD---------TLDPALLRPGRLDRKVEFGLPDLESRTQIFKI 350 (376)
Q Consensus 280 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~---------~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~ 350 (376)
...+......+..+++. ..++.+|+|++... .....+. ||+...+.+++.+.++..+++..
T Consensus 145 --~~~~~~~~~~L~~~~~~------~~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~ 214 (350)
T 2qen_A 145 --SRGGKELLALFAYAYDS------LPNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKR 214 (350)
T ss_dssp --TTTTHHHHHHHHHHHHH------CTTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHH
T ss_pred --ccchhhHHHHHHHHHHh------cCCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHH
Confidence 00133444444444443 24677777765421 1112222 36667899999999999999988
Q ss_pred HhccCCCC-CcccHHHHHHHCCCCC
Q 017161 351 HTRTMNCE-RDIRFELLARLCPNST 374 (376)
Q Consensus 351 ~~~~~~~~-~~vdl~~lA~~t~g~s 374 (376)
.+...+.. .+..+..+...|.|+.
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 215 GFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred HHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 77654432 2335677888888763
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.22 E-value=5e-10 Score=107.09 Aligned_cols=182 Identities=15% Similarity=0.175 Sum_probs=116.2
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh-
Q 017161 160 EEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL- 238 (376)
Q Consensus 160 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el- 238 (376)
...+....+.++|.++.++.|.+ +.. ..++|+||+|+|||+|++.+++..+..++.+++...
T Consensus 5 ~~~~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~ 67 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 67 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGT
T ss_pred CCCCCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhc
Confidence 33455566779999999999987 531 479999999999999999999988777777776542
Q ss_pred ----------hHhh---hc--------------h------------------hhHHHHHHHHHHHcC--CCeEEEEcCCc
Q 017161 239 ----------VQKY---VG--------------E------------------GARMVRELFQMARSK--KACIVFFDEVD 271 (376)
Q Consensus 239 ----------~~~~---~g--------------~------------------~~~~~~~lf~~a~~~--~psIl~iDEiD 271 (376)
.... +. . ....+..++...... .|.+|+|||++
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~ 147 (357)
T 2fna_A 68 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQ 147 (357)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGG
T ss_pred cccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHH
Confidence 0000 00 0 011234445444332 38899999999
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC---------CCccccCCCCcceEEEecCCCHH
Q 017161 272 AIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT---------LDPALLRPGRLDRKVEFGLPDLE 342 (376)
Q Consensus 272 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~---------ld~allr~gRfd~~i~~~~Pd~~ 342 (376)
.+.... +.+....+..+.+. ..++.+|+|++.... ....+ .||+...+.+++.+.+
T Consensus 148 ~~~~~~-------~~~~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~ 212 (357)
T 2fna_A 148 ELVKLR-------GVNLLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSRE 212 (357)
T ss_dssp GGGGCT-------TCCCHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHH
T ss_pred HhhccC-------chhHHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHH
Confidence 985310 11223334344333 136777877765321 11122 2366688999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHCCCCC
Q 017161 343 SRTQIFKIHTRTMNCERDIRFELLARLCPNST 374 (376)
Q Consensus 343 ~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~s 374 (376)
+..+++...+...+...+ +...+...|.|+.
T Consensus 213 e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P 243 (357)
T 2fna_A 213 EAIEFLRRGFQEADIDFK-DYEVVYEKIGGIP 243 (357)
T ss_dssp HHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCH
T ss_pred HHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCH
Confidence 999999887754333332 2378888888863
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.10 E-value=1.8e-10 Score=102.35 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=63.0
Q ss_pred CCCCcccccCcHH----HHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 163 PDVTYNDVGGCKE----QIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 163 ~~~~~~di~G~~~----~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
.+.+|+++.+.+. +++.+++++.... ....+.+++|+||||||||+||+++++.+ +.+++.+++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE---------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC---------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh---------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 3457888877553 3444444443310 00123789999999999999999999977 677888888
Q ss_pred hhhhHhhhchh-hHHHHHHHHHHHcCCCeEEEEcCCccc
Q 017161 236 SELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAI 273 (376)
Q Consensus 236 ~el~~~~~g~~-~~~~~~lf~~a~~~~psIl~iDEiD~l 273 (376)
+++........ ...+..++..... +.+|+|||++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 88765443211 0011223333332 359999999765
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.08 E-value=1e-10 Score=99.79 Aligned_cols=105 Identities=20% Similarity=0.286 Sum_probs=71.5
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGAR 277 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r 277 (376)
+...++|+||+|+|||+|++++++.+ +...+.+++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~--- 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG--- 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC---
Confidence 45679999999999999999999977 666788887766433 112346799999998862
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCCC--ccccCCCCcceEEEe
Q 017161 278 FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-PDTLD--PALLRPGRLDRKVEF 336 (376)
Q Consensus 278 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~-~~~ld--~allr~gRfd~~i~~ 336 (376)
...+..+.++++.+. ..+...+|+|||. +..+. ++|.+ |+..-..+
T Consensus 97 --------~~~~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 97 --------NEEQALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp --------SHHHHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred --------hHHHHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 223777888887653 1223335667774 44333 77777 76544333
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.05 E-value=5e-10 Score=110.15 Aligned_cols=150 Identities=22% Similarity=0.348 Sum_probs=99.8
Q ss_pred cccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh-
Q 017161 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY- 242 (376)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~- 242 (376)
+..+.|.+..++++.+.+.. . ......++|+|++|||||++|++++... +.+|+.++|..+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK----------I-SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH----------H-TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHH----------h-cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 45688888888888887764 1 1345679999999999999999999875 4789999998764321
Q ss_pred ----hchhh-------HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc-----CC-CCC
Q 017161 243 ----VGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD-----GF-DAR 305 (376)
Q Consensus 243 ----~g~~~-------~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld-----~~-~~~ 305 (376)
+|... ......|..|.. .+||||||+.+ +.+.|..|+++|+.-. +. ...
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 22110 011234555544 49999999999 8899999999998632 11 112
Q ss_pred CCeEEEEEeCCC-------CCCCccccCCCCcceEEEecCCCHHHH
Q 017161 306 GNIKVLMATNRP-------DTLDPALLRPGRLDRKVEFGLPDLESR 344 (376)
Q Consensus 306 ~~v~VI~tTn~~-------~~ld~allr~gRfd~~i~~~~Pd~~~r 344 (376)
.++.||+|||.. ..+.+.|.. |+. .+.+..|...+|
T Consensus 271 ~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~-~~~i~lPpLreR 313 (387)
T 1ny5_A 271 VNVRILAATNRNIKELVKEGKFREDLYY--RLG-VIEIEIPPLRER 313 (387)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-TEEEECCCGGGC
T ss_pred ccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-CCeecCCcchhc
Confidence 368899999973 233444443 442 334555555444
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.01 E-value=6.6e-11 Score=112.86 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=72.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCccccc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG 275 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~ 275 (376)
|+.+...++|+||||||||+||.++|...+. .|+.....+.+..+.......+..+++...... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 4556667899999999999999999986543 455553233333333444555556666665554 999999999865
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccc
Q 017161 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPAL 324 (376)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~al 324 (376)
...+.+. .....+.+.+++..+.++....++.+|+++| +...++++
T Consensus 197 ~~~~~s~--~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTT--SGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccc--cchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 4322110 0111234445555554443345677888888 55566554
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.96 E-value=7.2e-10 Score=105.69 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=73.1
Q ss_pred CCCcccccCcH----HHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEec
Q 017161 164 DVTYNDVGGCK----EQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (376)
Q Consensus 164 ~~~~~di~G~~----~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~ 235 (376)
+.+|+++.+.. .++..+.+++.. ++-..+.+++||||||||||+||.++|+.+ +.+++.+.+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~----------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ----------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH----------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh----------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 35788887643 233344444442 111135789999999999999999999865 477888888
Q ss_pred hhhhHhhhchh-hHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHH-HHHHHHHHhcCCCCCCCeEEEEE
Q 017161 236 SELVQKYVGEG-ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQR-TMLEIVNQLDGFDARGNIKVLMA 313 (376)
Q Consensus 236 ~el~~~~~g~~-~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~-~l~~ll~~ld~~~~~~~v~VI~t 313 (376)
++++....... ...+...+.... .+.+|||||++.... +...+. .+..+++... ..+..+|+|
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~~---------~~~~~~~ll~~ll~~r~----~~~~~~Iit 254 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQA---------TSWVRDEVLQVILQYRM----LEELPTFFT 254 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC---------------CTTTTHHHHHHHHH----HHTCCEEEE
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCCC---------CHHHHHHHHHHHHHHHH----HCCCcEEEE
Confidence 88776543321 111122222222 245999999976522 111222 2333554321 123458889
Q ss_pred eCCC
Q 017161 314 TNRP 317 (376)
Q Consensus 314 Tn~~ 317 (376)
||.+
T Consensus 255 SN~~ 258 (308)
T 2qgz_A 255 SNYS 258 (308)
T ss_dssp ESSC
T ss_pred CCCC
Confidence 9964
No 95
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.86 E-value=4.3e-09 Score=80.73 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=61.4
Q ss_pred hhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCC
Q 017161 75 SDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPP 148 (376)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~ 148 (376)
.++....+++|+.||++.+++++ ++++|+.+++++|+|++...++...|+||++|+++..++++...||.
T Consensus 8 keei~~L~~~P~~vG~v~e~~dd----~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 8 RRELDRMRVPPLIVGTVVDKVGE----RKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp HHHHHHHHSCCEEEEEEEEEEET----TEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred HHHHHHhcCCCceEEEEEEEcCC----CEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 34444446899999999999986 46999999999999999999999999999999999999999998874
No 96
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.86 E-value=1.1e-08 Score=99.85 Aligned_cols=158 Identities=20% Similarity=0.304 Sum_probs=101.1
Q ss_pred ccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC--ceEEEechhhhHh----
Q 017161 168 NDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA--CFIRVIGSELVQK---- 241 (376)
Q Consensus 168 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~--~~i~v~~~el~~~---- 241 (376)
..++|.+....++.+.+... ......++++|++||||+++|+++....+. .|+.++|..+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 45788888888887777541 123456999999999999999999987643 3999999865322
Q ss_pred -hhchhh-------HHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhc--CCCC----CCC
Q 017161 242 -YVGEGA-------RMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLD--GFDA----RGN 307 (376)
Q Consensus 242 -~~g~~~-------~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~----~~~ 307 (376)
.+|... ..-...|..|..+ +||||||+.+ +...|..|+++|+.-. .... .-+
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred HhcCccccccCCcccccCChHhhcCCC---eEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 122110 0012245555443 9999999999 8899999999998632 1111 125
Q ss_pred eEEEEEeCCC-------CCCCccccCCCCcce-EEEecCCCH--HHHHHHHHHHh
Q 017161 308 IKVLMATNRP-------DTLDPALLRPGRLDR-KVEFGLPDL--ESRTQIFKIHT 352 (376)
Q Consensus 308 v~VI~tTn~~-------~~ld~allr~gRfd~-~i~~~~Pd~--~~r~~Il~~~~ 352 (376)
+.+|+|||.. ..+.+.|+. |+.. .|.+|+... ++...++..++
T Consensus 264 ~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l 316 (368)
T 3dzd_A 264 IRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFL 316 (368)
T ss_dssp CEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHH
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHH
Confidence 7899999963 233344444 4432 455554433 34455555554
No 97
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.82 E-value=2.5e-09 Score=104.63 Aligned_cols=120 Identities=21% Similarity=0.226 Sum_probs=77.8
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCccccc-
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGG- 275 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~- 275 (376)
++++++..++|+||||+|||||++++++.++..++.+..+.-... ..+..+ -...++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~------~~lg~~------~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLN------FELGVA------IDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHH------HHHGGG------TTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHH------HHHHHh------cchhHHHHHHHHHHHHH
Confidence 478888999999999999999999999988776655333221000 011111 2335789999999865
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecC
Q 017161 276 ARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (376)
Q Consensus 276 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~ 338 (376)
.|.-.. +.. .. .+..+.+.++| .+.|+++||+++.+ +++++|||++..+....
T Consensus 232 ~r~l~~--~~~-~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPS--GQG-IN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCC--CSH-HH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhccc--cCc-ch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 221111 111 11 22333444543 45688999999999 89999999987665533
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.80 E-value=3.4e-08 Score=116.25 Aligned_cols=126 Identities=17% Similarity=0.256 Sum_probs=96.9
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDG 281 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~ 281 (376)
..++++.||+|||||.+++++|+.+|.+++.++|++-+. ...+..+|..+.... +.++||||+.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhc--------
Confidence 467999999999999999999999999999999987543 233455665554432 59999999998
Q ss_pred CCCCHHHHHHHHHHHHHhc-------------C--CCCCCCeEEEEEeCC----CCCCCccccCCCCcceEEEecCCCHH
Q 017161 282 VGGDNEVQRTMLEIVNQLD-------------G--FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDLE 342 (376)
Q Consensus 282 ~~~~~~~~~~l~~ll~~ld-------------~--~~~~~~v~VI~tTn~----~~~ld~allr~gRfd~~i~~~~Pd~~ 342 (376)
+.++...+.+.+..+. | +.-..++.|++|.|. ...|+.+|++ || +.+.+..||.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 7788877755554321 1 112346778899984 4678999998 89 89999999999
Q ss_pred HHHHHH
Q 017161 343 SRTQIF 348 (376)
Q Consensus 343 ~r~~Il 348 (376)
...+|+
T Consensus 784 ~i~ei~ 789 (2695)
T 4akg_A 784 TIAEMI 789 (2695)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 99
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.78 E-value=5.6e-09 Score=93.31 Aligned_cols=127 Identities=21% Similarity=0.205 Sum_probs=79.8
Q ss_pred CceeeecCCCChHHHHHHHHHHh--------cC-CceEEEechhhhHhhh-------------ch--hhHHHHHHHHHHH
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR--------TD-ACFIRVIGSELVQKYV-------------GE--GARMVRELFQMAR 258 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~--------l~-~~~i~v~~~el~~~~~-------------g~--~~~~~~~lf~~a~ 258 (376)
-..|++|+||||||++|.+++.. .| .+++..++.++..... ++ ....+.+++.. .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-P 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-G
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-c
Confidence 35789999999999999886543 23 5566666665532221 11 11223332211 2
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecC
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL 338 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~ 338 (376)
....+||+|||++.+.+.+.+.. .. . .++..+.. .....+-||++|+.+..|+.+++. |++..+.+..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~--e~---~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGS--KI---P----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTC--CC---C----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred ccCceEEEEEChhhhccCccccc--hh---H----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 34467999999999976552211 11 1 23333332 234456789999999999999998 9999999987
Q ss_pred CCHH
Q 017161 339 PDLE 342 (376)
Q Consensus 339 Pd~~ 342 (376)
|...
T Consensus 153 ~~~~ 156 (199)
T 2r2a_A 153 NKMG 156 (199)
T ss_dssp CSSC
T ss_pred cccC
Confidence 6543
No 100
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.73 E-value=2.5e-08 Score=114.04 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=83.4
Q ss_pred chhhhHhcC---CCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhh----Hhhhc------------hhh
Q 017161 190 HPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV----QKYVG------------EGA 247 (376)
Q Consensus 190 ~~~~~~~~g---~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~----~~~~g------------~~~ 247 (376)
.+++-.-+| ++++.+++|+||||||||+||.+++.+. +.....++..+.+ ....| ..+
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E 1491 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 1491 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHH
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHH
Confidence 444555556 8899999999999999999999998764 4555666655322 22222 344
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCcccccCC---CCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 017161 248 RMVRELFQMARSKKACIVFFDEVDAIGGAR---FDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMAT 314 (376)
Q Consensus 248 ~~~~~lf~~a~~~~psIl~iDEiD~l~~~r---~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tT 314 (376)
..++.++..++..+|++||||+++.+.+.+ ++.+.+......+.+.++|.++.++....++.||++-
T Consensus 1492 ~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1492 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 667778888888999999999999887642 1111111111345666777777666566676555443
No 101
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.68 E-value=1.6e-08 Score=90.26 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=27.4
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCCce
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~ 230 (376)
+++..+++|||||||||||++|.++|+.+....
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 344556799999999999999999999886543
No 102
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.65 E-value=5.3e-08 Score=97.05 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=74.7
Q ss_pred ceeeecCCCChHHHHHHHH-HHhcCCceEEEech-----hhhHhhhch-hhHHHHHHHHHHHcCCCeEEEEcCCcccccC
Q 017161 204 GVLCYGPPGTGKTLLARAV-ANRTDACFIRVIGS-----ELVQKYVGE-GARMVRELFQMARSKKACIVFFDEVDAIGGA 276 (376)
Q Consensus 204 ~vLL~GppGtGKT~Lakal-A~~l~~~~i~v~~~-----el~~~~~g~-~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~ 276 (376)
++||.|+||| ||++|+++ +..+....+ +.+. .+...+.+. +...-...+..|.. .++|+|||+.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~--- 312 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKEDRGWALRAGAAVLADG---GILAVDHLEGA--- 312 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEESSSEEEEECHHHHTTT---SEEEEECCTTC---
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEcCCCcccCCCeeEEcCC---CeeehHhhhhC---
Confidence 7999999999 99999999 665533222 2211 111000000 00000112334433 39999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHh----cCCCCCCCeEEEEEeCCCC-----------CCCccccCCCCcceEEE-ecCCC
Q 017161 277 RFDDGVGGDNEVQRTMLEIVNQL----DGFDARGNIKVLMATNRPD-----------TLDPALLRPGRLDRKVE-FGLPD 340 (376)
Q Consensus 277 r~~~~~~~~~~~~~~l~~ll~~l----d~~~~~~~v~VI~tTn~~~-----------~ld~allr~gRfd~~i~-~~~Pd 340 (376)
.+..+..|++.|++- .|..-..++.||+|+|... .|++++++ |||..+. ++.|+
T Consensus 313 --------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd 382 (506)
T 3f8t_A 313 --------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPR 382 (506)
T ss_dssp --------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC---
T ss_pred --------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCC
Confidence 788999999999862 2322235788999999875 78889999 9987554 45555
Q ss_pred HH
Q 017161 341 LE 342 (376)
Q Consensus 341 ~~ 342 (376)
.+
T Consensus 383 ~e 384 (506)
T 3f8t_A 383 PG 384 (506)
T ss_dssp --
T ss_pred hh
Confidence 43
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.62 E-value=1.8e-07 Score=111.02 Aligned_cols=139 Identities=23% Similarity=0.303 Sum_probs=93.1
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc-CCceEEEechhhhHhhhchhhHHHHHHHHHH----H------------cCCCe
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVIGSELVQKYVGEGARMVRELFQMA----R------------SKKAC 263 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l-~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a----~------------~~~ps 263 (376)
..+++||+||||||||+++......+ +..++.++++.-.. ...+...+... + .++..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 45789999999999998876655544 55677777765422 12222333221 0 13346
Q ss_pred EEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCC-------CCCCeEEEEEeCCC-----CCCCccccCCCCcc
Q 017161 264 IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFD-------ARGNIKVLMATNRP-----DTLDPALLRPGRLD 331 (376)
Q Consensus 264 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~-------~~~~v~VI~tTn~~-----~~ld~allr~gRfd 331 (376)
|+||||++.-.... .+.......|.++++.-.-+. ...++.+|+|+|.+ ..++++++| ||
T Consensus 1377 VlFiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F- 1448 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA- 1448 (3245)
T ss_dssp EEEETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-
T ss_pred EEEecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-
Confidence 99999998754322 224456666777776422111 12368899999987 468999999 99
Q ss_pred eEEEecCCCHHHHHHHHHHHhc
Q 017161 332 RKVEFGLPDLESRTQIFKIHTR 353 (376)
Q Consensus 332 ~~i~~~~Pd~~~r~~Il~~~~~ 353 (376)
..+.++.|+.++...|+..++.
T Consensus 1449 ~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHH
Confidence 5699999999999999876654
No 104
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.53 E-value=1.7e-07 Score=87.07 Aligned_cols=121 Identities=18% Similarity=0.258 Sum_probs=70.3
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDD 280 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~ 280 (376)
+.++++||||||||||++|+++|+.+.. +-.++.+. ..+ .|..+ ....|++.||....-
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~~--~~k~i~l~Ee~~~~~------ 161 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFNDC--VDKMVIWWEEGKMTA------ 161 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGGG--SSCSEEEECSCCEET------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------ccccc--cccEEEEeccccchh------
Confidence 3467999999999999999999997643 22222211 000 12221 222477778766541
Q ss_pred CCCCCHHHHHHHHHHHH----HhcCC-C---CCCCeEEEEEeCC-C----------CCCCccccCCCCcceEEEec----
Q 017161 281 GVGGDNEVQRTMLEIVN----QLDGF-D---ARGNIKVLMATNR-P----------DTLDPALLRPGRLDRKVEFG---- 337 (376)
Q Consensus 281 ~~~~~~~~~~~l~~ll~----~ld~~-~---~~~~v~VI~tTn~-~----------~~ld~allr~gRfd~~i~~~---- 337 (376)
+.+..+-.++. .++.- . .-....+|+|||. + +...++|.+ |+ ..+.|+
T Consensus 162 ------d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p 232 (267)
T 1u0j_A 162 ------KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLD 232 (267)
T ss_dssp ------TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCC
T ss_pred ------HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCC
Confidence 12233434432 01100 0 1145678999996 2 244577888 77 677776
Q ss_pred ----CCCHHHHHHHHHHH
Q 017161 338 ----LPDLESRTQIFKIH 351 (376)
Q Consensus 338 ----~Pd~~~r~~Il~~~ 351 (376)
..+.++-...|+..
T Consensus 233 ~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 233 HDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp TTSCCCCHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHH
Confidence 56778888888743
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.43 E-value=7.1e-07 Score=78.03 Aligned_cols=122 Identities=17% Similarity=0.220 Sum_probs=66.9
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhh---------------------------------hHhhhchh--hH
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL---------------------------------VQKYVGEG--AR 248 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el---------------------------------~~~~~g~~--~~ 248 (376)
.+.|.||+|+|||||++.++..++..+.-....+. ...+.... ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 47899999999999999999987543322111111 01111111 11
Q ss_pred HHHHHHHHH-----HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCC
Q 017161 249 MVRELFQMA-----RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD--TLD 321 (376)
Q Consensus 249 ~~~~lf~~a-----~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~--~ld 321 (376)
..+-.+..+ ....|.++++||++-.. +.+...++.+.+++.. .+..+|++++... .+-
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~--------~ld~~~~~~l~~~l~~-------~~~~~i~~~H~~h~~~~~ 146 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKME--------LFSKKFRDLVRQIMHD-------PNVNVVATIPIRDVHPLV 146 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--------GGCHHHHHHHHHHHTC-------TTSEEEEECCSSCCSHHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcc--------cCCHHHHHHHHHHHhc-------CCCeEEEEEccCCCchHH
Confidence 222233332 46778899999975332 1266667777766643 2444666665322 222
Q ss_pred ccccCCCCcc-eEEEecCCCHH
Q 017161 322 PALLRPGRLD-RKVEFGLPDLE 342 (376)
Q Consensus 322 ~allr~gRfd-~~i~~~~Pd~~ 342 (376)
..+.+ |-+ +.+++...+.+
T Consensus 147 ~~i~~--r~~~~i~~~~~~~r~ 166 (178)
T 1ye8_A 147 KEIRR--LPGAVLIELTPENRD 166 (178)
T ss_dssp HHHHT--CTTCEEEECCTTTTT
T ss_pred HHHHh--cCCcEEEEecCcCHH
Confidence 34444 322 46677666543
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.37 E-value=1.9e-06 Score=102.41 Aligned_cols=125 Identities=18% Similarity=0.298 Sum_probs=94.8
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhchhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCC
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGV 282 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~ 282 (376)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-+.- ..+..+|.-+... .+..+||||+.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 467899999999999999999999999999999875332 2344455554432 248899999998
Q ss_pred CCCHHHHHHHHHHHHHhc--------------C--CCCCCCeEEEEEeCC----CCCCCccccCCCCcceEEEecCCCHH
Q 017161 283 GGDNEVQRTMLEIVNQLD--------------G--FDARGNIKVLMATNR----PDTLDPALLRPGRLDRKVEFGLPDLE 342 (376)
Q Consensus 283 ~~~~~~~~~l~~ll~~ld--------------~--~~~~~~v~VI~tTn~----~~~ld~allr~gRfd~~i~~~~Pd~~ 342 (376)
+.++...+.+.+..+. | +.-..++.|++|.|. ...|+.+|+. || +.+.+..||.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 7788877776555221 1 122346788999984 4688999999 89 88999999999
Q ss_pred HHHHHH
Q 017161 343 SRTQIF 348 (376)
Q Consensus 343 ~r~~Il 348 (376)
...+|+
T Consensus 744 ~i~ei~ 749 (3245)
T 3vkg_A 744 MIAQVM 749 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 107
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.36 E-value=1.4e-06 Score=78.99 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=73.3
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHH--Hh--cCCceEEEechhhhHh------hhc-----------------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVA--NR--TDACFIRVIGSELVQK------YVG----------------------- 244 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA--~~--l~~~~i~v~~~el~~~------~~g----------------------- 244 (376)
|++++..+.|.||+|+|||||++.++ .. .+...+.+........ .+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 56778889999999999999999998 32 2344444443221100 000
Q ss_pred -------------hhhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEE
Q 017161 245 -------------EGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVL 311 (376)
Q Consensus 245 -------------~~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI 311 (376)
........+........|.+|+|||.-....... ........+..++..+. ..++.||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEE
Confidence 0111223333444557899999999887753211 12344455667776653 2356788
Q ss_pred EEeCCCCCCC-----ccccCCCCc-ceEEEec
Q 017161 312 MATNRPDTLD-----PALLRPGRL-DRKVEFG 337 (376)
Q Consensus 312 ~tTn~~~~ld-----~allr~gRf-d~~i~~~ 337 (376)
++|+..+... +.+.. .+ |+.+.+.
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp EEECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred EEECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 8888766542 22222 45 7777664
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.33 E-value=1.8e-06 Score=77.19 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=63.1
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh----hHhh--hc------------------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL----VQKY--VG------------------------ 244 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el----~~~~--~g------------------------ 244 (376)
|+.++..++|+||+|+|||+|++.++... +...+.++.... .... .+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 46777789999999999999999999653 445555443221 1100 00
Q ss_pred ------hhhHHHHHHHHHHHcCCCe--EEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 245 ------EGARMVRELFQMARSKKAC--IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 245 ------~~~~~~~~lf~~a~~~~ps--Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
........+...+....|. +|+|||+..+... +......+...+..+. ...++.||++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~--------d~~~~~~~~~~l~~~~---~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD--------KPAMARKISYYLKRVL---NKWNFTIYATSQY 167 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS--------CGGGHHHHHHHHHHHH---HHTTEEEEEEEC-
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC--------CHHHHHHHHHHHHHHH---HhCCCeEEEEecc
Confidence 1112233344444456788 9999999987431 2223344444444331 1235778888886
Q ss_pred C
Q 017161 317 P 317 (376)
Q Consensus 317 ~ 317 (376)
.
T Consensus 168 ~ 168 (235)
T 2w0m_A 168 A 168 (235)
T ss_dssp -
T ss_pred C
Confidence 5
No 109
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=98.32 E-value=2.2e-06 Score=77.60 Aligned_cols=75 Identities=7% Similarity=0.029 Sum_probs=61.9
Q ss_pred hhhhHHHhhhcCCceeeeeeeecCCCCCCCeEEEeecccceEEEecCCCCCCCCCCCCceeeeccccceeccCCCCCCCC
Q 017161 73 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152 (376)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~l~~~~~~ 152 (376)
++.+..+ .+++|+.+|+++++++++ +++|. ..+.+|+|.+...++...|+||++|+|+ .++.++..+|.....
T Consensus 87 LkeEler-L~sPPL~iGtvlev~dd~----~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~~G 159 (251)
T 3m9b_A 87 LREEVDR-LGQPPSGYGVLLATHDDD----TVDVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEAVG 159 (251)
T ss_dssp HHHHHHH-HHSCCEEEEEEEEECSSS----CEEEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCCCS
T ss_pred HHHHHHH-hcCCCceEEEEEEEcCCC----EEEEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCCcc
Confidence 3444444 479999999999998653 57777 5889999999999999999999999995 699999999887665
Q ss_pred cc
Q 017161 153 SV 154 (376)
Q Consensus 153 ~~ 154 (376)
.+
T Consensus 160 ev 161 (251)
T 3m9b_A 160 EI 161 (251)
T ss_dssp EE
T ss_pred cE
Confidence 44
No 110
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.31 E-value=1.9e-06 Score=82.63 Aligned_cols=144 Identities=11% Similarity=0.069 Sum_probs=94.0
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CC-ceEEEechhhhHhhhchhhHHHHHHHHHHH----cCCCeEEEEcCCcc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DA-CFIRVIGSELVQKYVGEGARMVRELFQMAR----SKKACIVFFDEVDA 272 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~-~~i~v~~~el~~~~~g~~~~~~~~lf~~a~----~~~psIl~iDEiD~ 272 (376)
.+..+|||||+|+||++.++.++..+ +. ++..+... + ...++++++.+. .....|++|||++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45679999999999999999998865 21 22222111 1 122344443332 35567999999988
Q ss_pred -cccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC------CCCccccCCCCcceEEEecCCCHHHHH
Q 017161 273 -IGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD------TLDPALLRPGRLDRKVEFGLPDLESRT 345 (376)
Q Consensus 273 -l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~------~ld~allr~gRfd~~i~~~~Pd~~~r~ 345 (376)
+ +.+.++.|...+.. +..++++|++|+.++ .+.+++.+ |+ ..+.|..++..+..
T Consensus 88 kl-----------~~~~~~aLl~~le~-----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GP-----------NAAINEQLLTLTGL-----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp CC-----------CTTHHHHHHHHHTT-----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CC-----------ChHHHHHHHHHHhc-----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 6 23345666665543 345666666666543 35567777 65 68899999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHHHHCCC
Q 017161 346 QIFKIHTRTMNCE-RDIRFELLARLCPN 372 (376)
Q Consensus 346 ~Il~~~~~~~~~~-~~vdl~~lA~~t~g 372 (376)
.+++..++..++. .+..+..|++.+.|
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 9999888776643 22346677777665
No 111
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.30 E-value=1.1e-05 Score=89.15 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=101.5
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---C----CceEEEechh
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---D----ACFIRVIGSE 237 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~----~~~i~v~~~e 237 (376)
.....++|.++.+++|.+.+... -...+-+.|+|+.|+|||+||+.+++.. . ...+.+..+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 34456999999999999988531 1234568899999999999999998752 1 2223444322
Q ss_pred -----hhHh------hhc----------hhhHHHHHHHHHHHcC--CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHH
Q 017161 238 -----LVQK------YVG----------EGARMVRELFQMARSK--KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLE 294 (376)
Q Consensus 238 -----l~~~------~~g----------~~~~~~~~lf~~a~~~--~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ 294 (376)
+... ..+ .....+...+...... ++.+|+||+++.. +
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-------------~------- 249 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-------------W------- 249 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-------------H-------
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-------------H-------
Confidence 1100 000 1112223333333333 3789999998753 1
Q ss_pred HHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecC-CCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 017161 295 IVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGL-PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 373 (376)
Q Consensus 295 ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~-Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~ 373 (376)
++..+ ..+..||+||+........ . .....+.++. ++.++-.++|..+.....-.......+|++.|.|.
T Consensus 250 ---~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 250 ---VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp ---HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred ---HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 12222 3456788899866433211 1 2235677775 88999999998877443322223467899999885
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.30 E-value=2.4e-06 Score=77.16 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=51.4
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh--c-------CCceEEEechhh------hHh--hhch---------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR--T-------DACFIRVIGSEL------VQK--YVGE--------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~--l-------~~~~i~v~~~el------~~~--~~g~--------------- 245 (376)
|+++...++|+||||+|||+|++.+|.. . +...+.++.... ... .++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5777788999999999999999999984 2 345666765441 100 0110
Q ss_pred -hh---HHHHHHHHHHHcCCCeEEEEcCCccccc
Q 017161 246 -GA---RMVRELFQMARSKKACIVFFDEVDAIGG 275 (376)
Q Consensus 246 -~~---~~~~~lf~~a~~~~psIl~iDEiD~l~~ 275 (376)
.. ..+..+...+....|.+|+||++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 01 1122344445557899999999998864
No 113
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.29 E-value=7e-06 Score=84.29 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=94.7
Q ss_pred cccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHh-------c--CCceEEEech-
Q 017161 167 YNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR-------T--DACFIRVIGS- 236 (376)
Q Consensus 167 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~-------l--~~~~i~v~~~- 236 (376)
...++|.+..+..|.+.+... -...+.++|+||+|+|||+||+.+++. + +..++.+...
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 345899999999999988631 123456899999999999999999753 2 2233334322
Q ss_pred --hhhHhh------hc----------hhhHHHHH-HHHHHH-cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 017161 237 --ELVQKY------VG----------EGARMVRE-LFQMAR-SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIV 296 (376)
Q Consensus 237 --el~~~~------~g----------~~~~~~~~-lf~~a~-~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll 296 (376)
.+.... .+ .....+.. +..... ...|.+|+||+++.. . .+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-------------~-------~l 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-------------W-------VL 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-------------H-------HH
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-------------H-------HH
Confidence 111111 11 01111222 222222 236789999998642 1 12
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEe---cCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 017161 297 NQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF---GLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNS 373 (376)
Q Consensus 297 ~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~---~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~ 373 (376)
.. + ..++.||+||........ .. ...+.+ ...+.++-.++|..++..-..........|++.|.|.
T Consensus 252 ~~---l--~~~~~ilvTsR~~~~~~~--~~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 252 KA---F--DSQCQILLTTRDKSVTDS--VM----GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS 320 (591)
T ss_dssp HT---T--CSSCEEEEEESCGGGGTT--CC----SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC
T ss_pred HH---h--cCCCeEEEECCCcHHHHh--cC----CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC
Confidence 22 2 345678888875432111 01 223344 4678999999998877541111123467888888885
No 114
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.27 E-value=2.2e-06 Score=83.44 Aligned_cols=119 Identities=21% Similarity=0.262 Sum_probs=68.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHh----hhc------------hhhHHHHHHHHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQK----YVG------------EGARMVRELFQMAR 258 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~----~~g------------~~~~~~~~lf~~a~ 258 (376)
|+++...++|+||||+|||+||..+|... +.+.+.++...-... ..| ..+..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56777889999999999999999998754 556677765432111 111 11222222223334
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
...+++||||.+..+.+.....+..++. ...+.+.+++..+..+....++.||++...
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 5678999999999997522111000110 122445556655544334556777776554
No 115
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.26 E-value=6.8e-07 Score=86.51 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=51.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH----hhhc------------hhhHHHHHHHHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----KYVG------------EGARMVRELFQMAR 258 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~----~~~g------------~~~~~~~~lf~~a~ 258 (376)
|+++...++|+||||+|||+|+..++... +...+.++...... ...| .....+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56777889999999999999999998653 55666666543211 1111 11222222333444
Q ss_pred cCCCeEEEEcCCccccc
Q 017161 259 SKKACIVFFDEVDAIGG 275 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~ 275 (376)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 67799999999999864
No 116
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.23 E-value=4.6e-07 Score=68.18 Aligned_cols=40 Identities=40% Similarity=0.659 Sum_probs=38.3
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 337 GLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 337 ~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|+||.++|.+||+.|++++.+..++|+..||+.|+|||||
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGA 40 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGA 40 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHH
Confidence 6899999999999999999988899999999999999997
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.23 E-value=1.3e-06 Score=77.60 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=33.0
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
|+++...++|+||||+|||+|++.+|...+...+.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5777788999999999999999999985566677776543
No 118
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.22 E-value=1.7e-06 Score=83.92 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhH----hhhc------------hhhHHHHHHHHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQ----KYVG------------EGARMVRELFQMAR 258 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~----~~~g------------~~~~~~~~lf~~a~ 258 (376)
|+++...++|+||||||||+|+..+|..+ +...+.++..+... ..+| ..+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56777789999999999999999999864 55666777654211 1011 11222222333344
Q ss_pred cCCCeEEEEcCCccccc-CCCCCCCCCC--HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 259 SKKACIVFFDEVDAIGG-ARFDDGVGGD--NEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~-~r~~~~~~~~--~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
...+.+++||.+..+.+ ...++..+.. ....+.+.+++..+..+....++.||++..-
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 57789999999988875 2211111111 1223455555555544444556666666543
No 119
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.19 E-value=1.6e-06 Score=99.51 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=83.4
Q ss_pred ccCchhhhHhc---CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh----hc--------hhhH
Q 017161 187 PMLHPEKFVKL---GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----VG--------EGAR 248 (376)
Q Consensus 187 ~l~~~~~~~~~---g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~----~g--------~~~~ 248 (376)
+...+++..-+ |+.++..++|+|+||+|||+||..+|..+ +.++++++..+..... +| ....
T Consensus 714 ~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~ 793 (2050)
T 3cmu_A 714 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 793 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCS
T ss_pred ecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCC
Confidence 34456666666 48899999999999999999999999865 4568888876544332 22 1111
Q ss_pred HHHHHHHHHHc----CCCeEEEEcCCccccc-CCCCCCCC-CC-HHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 249 MVRELFQMARS----KKACIVFFDEVDAIGG-ARFDDGVG-GD-NEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 249 ~~~~lf~~a~~----~~psIl~iDEiD~l~~-~r~~~~~~-~~-~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
.+..++..++. ..|++||||.++.+.. .+.+...+ .. .-..+.+.+++..+..+....++.||++.+-.
T Consensus 794 ~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~ 869 (2050)
T 3cmu_A 794 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred CHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccc
Confidence 23444444433 7889999999999975 22111101 11 11234456666666555556788888887643
No 120
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.14 E-value=7.1e-07 Score=68.64 Aligned_cols=41 Identities=39% Similarity=0.662 Sum_probs=38.8
Q ss_pred ecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 336 FGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 336 ~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
-.+||.++|.+||+.+++++.+..++|++.||+.|+|||||
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGA 48 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGA 48 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHH
Confidence 46899999999999999999998899999999999999997
No 121
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.12 E-value=3.8e-06 Score=81.46 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=51.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhh----Hhhhch-----------hhHHHHHHHH-HHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV----QKYVGE-----------GARMVRELFQ-MAR 258 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~----~~~~g~-----------~~~~~~~lf~-~a~ 258 (376)
|+++...++|+|+||+|||+||..+|... +...+.++..... ....|. ....+..++. .++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57778889999999999999999998754 5667777763211 111111 1122223332 334
Q ss_pred cCCCeEEEEcCCccccc
Q 017161 259 SKKACIVFFDEVDAIGG 275 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~ 275 (376)
...+.+|+||.+..+.+
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56788999999999864
No 122
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.12 E-value=2.3e-05 Score=80.09 Aligned_cols=165 Identities=12% Similarity=0.107 Sum_probs=95.6
Q ss_pred cCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHH----hcCCce---EEEechh------
Q 017161 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN----RTDACF---IRVIGSE------ 237 (376)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~----~l~~~~---i~v~~~e------ 237 (376)
+|.+..+++|.+++... +-...+.+.|+|++|+|||+||+.+++ .....| +.++.+.
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999988531 112346788999999999999999996 333222 2223222
Q ss_pred --hhHhh---hchh-------------hHHHHHHHHHHHcC-CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 017161 238 --LVQKY---VGEG-------------ARMVRELFQMARSK-KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQ 298 (376)
Q Consensus 238 --l~~~~---~g~~-------------~~~~~~lf~~a~~~-~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 298 (376)
+.... .+.. ...+...+...... +..+|+||+++.. + .+ .+. .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-------------~---~~-~~~-~ 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-------------E---TI-RWA-Q 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-------------H---HH-HHH-H
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-------------h---hh-ccc-c
Confidence 11111 1110 11122333333344 3789999998764 1 11 111 1
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEecCCCHHHHHHHHHHHhccCCCCCc--ccHHHHHHHCCCC
Q 017161 299 LDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERD--IRFELLARLCPNS 373 (376)
Q Consensus 299 ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~~~--vdl~~lA~~t~g~ 373 (376)
. .+..||+||+...... ..+.....+.++..+.++-.++|..+......... .....|++.|.|.
T Consensus 263 ~------~gs~ilvTTR~~~v~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN----AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp H------TTCEEEEEESBGGGGG----GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred c------CCCEEEEEcCCHHHHH----HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 1 4566888888543211 01123467899999999999999988543321111 1246678888775
No 123
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.11 E-value=4.8e-06 Score=83.35 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=36.0
Q ss_pred CCcccccccccCCCCCccccc-CcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 151 DPSVTMMTVEEKPDVTYNDVG-GCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~di~-G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+..+..|++++.+.+|+++- ++..++..+...+.. ....++|.|+||||||+++.+++..+
T Consensus 7 ~~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 7 HHHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp --------------CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCccCCCccccCCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345566788889999999884 555555555555542 12379999999999999999999866
No 124
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.09 E-value=3.8e-06 Score=80.23 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=68.4
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEechhh---------hHhhhch--------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSEL---------VQKYVGE-------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~~el---------~~~~~g~-------------- 245 (376)
|+++...++|+||||+|||+++..+|... +...+.++.... ... .|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~-~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA-LGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH-TTCCHHHHHHTEEEEEC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH-hCCCHHHHhccEEEEeC
Confidence 67777889999999999999999999764 456666765442 111 110
Q ss_pred --hh---HHHHHHHHHHHc-CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 246 --GA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 246 --~~---~~~~~lf~~a~~-~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
.. ..+..+...++. ..+.+|+||.+..+......+. +...+.+..+.+++..+..+....++.||++.+.
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 123334444555 7789999999999864321110 1111222344455544443333346667776544
No 125
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.01 E-value=6e-06 Score=73.81 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=25.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
|+++...+.|.||+|+|||||++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56777789999999999999999999843
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.99 E-value=6.6e-06 Score=79.28 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=66.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEechhh------hH--hhhch---------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSEL------VQ--KYVGE--------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~~el------~~--~~~g~--------------- 245 (376)
|+++...++|+||||+|||+|+..+|... +...++++.... .. ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 57777789999999999999999999862 455666665441 00 00110
Q ss_pred -hh---HHHHHHHHHHHc--CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 246 -GA---RMVRELFQMARS--KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 246 -~~---~~~~~lf~~a~~--~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
.. ..+..+...++. ..+.+|+||.+..+......+. +...+-+..+.+++..+..+....++.||++....
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 11 122233344555 6789999999999864321100 01111122344444444333334466677766543
No 127
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.98 E-value=8.8e-06 Score=80.09 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=64.6
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEechhhh--------Hhhhch---------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSELV--------QKYVGE--------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~~el~--------~~~~g~--------------- 245 (376)
|+.+...++|+||||||||+|++.+|-.. +...++++..+.. ...+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56777789999999999999999776322 2346666654310 000110
Q ss_pred ----hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 017161 246 ----GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR 316 (376)
Q Consensus 246 ----~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~ 316 (376)
....+..+...+....|.+|+||++-.+......+ .+.-.+.++.+.+++..+..+....++.||++++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 01122233344445789999999998886533221 01112223333444444333323346778888775
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.95 E-value=2.4e-05 Score=70.60 Aligned_cols=38 Identities=34% Similarity=0.334 Sum_probs=29.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
|+.++..++|+||||+|||+++..+|... +...+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67778889999999999999998887643 455555554
No 129
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.94 E-value=1.2e-05 Score=77.79 Aligned_cols=41 Identities=27% Similarity=0.325 Sum_probs=32.2
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc---------CCceEEEechh
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT---------DACFIRVIGSE 237 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l---------~~~~i~v~~~e 237 (376)
.|+++...+.|+||||+|||+|++.++... +...++++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 367777789999999999999999999876 23446666543
No 130
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.92 E-value=1.4e-05 Score=76.01 Aligned_cols=117 Identities=14% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc-----CCceEEEechhhhH----hhhch------------hhHHHHHHHHH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSELVQ----KYVGE------------GARMVRELFQM 256 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~v~~~el~~----~~~g~------------~~~~~~~lf~~ 256 (376)
|+.+. -++|+||||+|||+|+-.++... +...+.++..+-.. ..+|- .+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56666 68999999999999988776543 56677777654221 11111 11110122222
Q ss_pred ---HHcCCCeEEEEcCCcccccCC-CCCCCC----CCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 017161 257 ---ARSKKACIVFFDEVDAIGGAR-FDDGVG----GDNEVQRTMLEIVNQLDGFDARGNIKVLMATN 315 (376)
Q Consensus 257 ---a~~~~psIl~iDEiD~l~~~r-~~~~~~----~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn 315 (376)
.+...|.+|+||-|..+.+.. .++.-+ ++...++.+.+.|..+.++....++.||++-.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 356789999999999997532 111111 00012344555554443333345666666544
No 131
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.88 E-value=2.5e-05 Score=75.72 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=58.1
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc----CCceEEEec-hhhh---------HhhhchhhHHHHHHHHHHHcCCCeEEE
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG-SELV---------QKYVGEGARMVRELFQMARSKKACIVF 266 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~-~el~---------~~~~g~~~~~~~~lf~~a~~~~psIl~ 266 (376)
+...++|.||+|+||||+++++++.+ +..++.+.- .++. +...+.....+...+..+....|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 34468999999999999999999865 233332221 1110 011111122345567777789999999
Q ss_pred EcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 267 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+||+- +.+....+.++.. . +..||+|++..+
T Consensus 202 lDEp~-------------d~e~~~~~~~~~~-------~-G~~vl~t~H~~~ 232 (356)
T 3jvv_A 202 VGEMR-------------DLETIRLALTAAE-------T-GHLVFGTLHTTS 232 (356)
T ss_dssp ESCCC-------------SHHHHHHHHHHHH-------T-TCEEEEEESCSS
T ss_pred cCCCC-------------CHHHHHHHHHHHh-------c-CCEEEEEEccCh
Confidence 99973 3444444444322 2 344788887654
No 132
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.87 E-value=6.5e-05 Score=70.14 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=38.1
Q ss_pred HHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 256 ~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
.|....|.+|++|| +.++-++..+..+.+++..+.. ..+..||++|+..+.+
T Consensus 156 raL~~~P~lLlLDE----------Pts~LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 156 GVLVMEPKVLILDE----------PTAGLDPMGVSEIMKLLVEMQK---ELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHTTCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH---HHCCEEEEEESCCSSG
T ss_pred HHHHcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHH
Confidence 34457789999999 5556788899999988877630 1246688899987654
No 133
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.85 E-value=1.3e-05 Score=68.92 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=32.6
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
+..++|.|+||+||||++++++..++.+++.++...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 35689999999999999999999999888887765543
No 134
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.85 E-value=4.9e-06 Score=72.99 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=19.1
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
.-++++||+|+|||+++..++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999766654
No 135
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.83 E-value=3.3e-05 Score=69.88 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=43.0
Q ss_pred CceeeecCCCChHHHHHHHHHHhc---CCceEEEechh-------hhHhhhchh-----hHHHHHHHHHHHc----CCCe
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE-------LVQKYVGEG-----ARMVRELFQMARS----KKAC 263 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~e-------l~~~~~g~~-----~~~~~~lf~~a~~----~~ps 263 (376)
.-++++||+|+||||++..++..+ +...+.+.... +.+. .|.. .....+++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 457788999999999999888765 44555443221 1111 1110 0112345666554 4578
Q ss_pred EEEEcCCccc
Q 017161 264 IVFFDEVDAI 273 (376)
Q Consensus 264 Il~iDEiD~l 273 (376)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999876
No 136
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.82 E-value=0.00012 Score=67.22 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=35.5
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
|....|.+|++|| +.++-+......+.+++..+. . +..||++|+..+.
T Consensus 159 aL~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~~~----~-g~tviivtH~~~~ 206 (247)
T 2ff7_A 159 ALVNNPKILIFDE----------ATSALDYESEHVIMRNMHKIC----K-GRTVIIIAHRLST 206 (247)
T ss_dssp HHTTCCSEEEECC----------CCSCCCHHHHHHHHHHHHHHH----T-TSEEEEECSSGGG
T ss_pred HHhcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHc----C-CCEEEEEeCCHHH
Confidence 3446788999999 455568889999999988773 2 4567888886543
No 137
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.82 E-value=4e-05 Score=69.90 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.6
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.+...+.|.||+|+|||||+++++...
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345677789999999999999999999854
No 138
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.81 E-value=0.00012 Score=66.73 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 256 ~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
.|-...|.+|++|| +.++-++..+..+.+++..+. ...+..||++|+..+
T Consensus 158 ral~~~p~llllDE----------Pts~LD~~~~~~i~~~l~~l~---~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 158 RALANNPPIILADQ----------PTWALDSKTGEKIMQLLKKLN---EEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HHcCCEEEEEcCCHH
Confidence 34456788999999 455668889999998888763 122466888998754
No 139
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=97.80 E-value=6.5e-06 Score=63.44 Aligned_cols=37 Identities=62% Similarity=1.153 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 340 DLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 340 d~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
|.++|.+||+.|++++++..++|++.||+.|+|||||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGA 38 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGA 38 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHH
Confidence 6679999999999999999999999999999999997
No 140
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.79 E-value=0.00014 Score=67.14 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++-+...+..+.+++..+. ..+..||++|+..+
T Consensus 160 aL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~----~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 160 ALMVNPRLAILDE----------PTSGLDVLNAREVRKILKQAS----QEGLTILVSSHNML 207 (256)
T ss_dssp HHTTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEEECCHH
T ss_pred HHHcCCCEEEEeC----------CccccCHHHHHHHHHHHHHHH----hCCCEEEEEcCCHH
Confidence 4446788999999 555678999999999988763 12456788888643
No 141
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.79 E-value=1.6e-05 Score=75.55 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=66.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---------------C----CceEEEechhh--hH---hh---hch-----
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---------------D----ACFIRVIGSEL--VQ---KY---VGE----- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---------------~----~~~i~v~~~el--~~---~~---~g~----- 245 (376)
|+++...++|+||||+|||++|..+|... + ...++++...- .. .+ .|.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 56777789999999999999999998752 2 45566665432 01 00 110
Q ss_pred -----------hh---HHHHHHHHHHHc-CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEE
Q 017161 246 -----------GA---RMVRELFQMARS-KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKV 310 (376)
Q Consensus 246 -----------~~---~~~~~lf~~a~~-~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~V 310 (376)
.+ ..+..+....+. ..+.+|+||.+..+......+. +...+.+..+.+++..+..+....++.|
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~v 252 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVV 252 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 01 122234444555 6789999999998864221110 1111222344555554444333456667
Q ss_pred EEEeC
Q 017161 311 LMATN 315 (376)
Q Consensus 311 I~tTn 315 (376)
|++..
T Consensus 253 i~~nq 257 (322)
T 2i1q_A 253 LVTNQ 257 (322)
T ss_dssp EEEEC
T ss_pred EEECc
Confidence 77644
No 142
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.77 E-value=3.2e-05 Score=71.95 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
|+.+...++|+||+|+|||+|++.++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5667778999999999999999999864
No 143
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.76 E-value=0.00027 Score=72.14 Aligned_cols=74 Identities=16% Similarity=0.307 Sum_probs=56.8
Q ss_pred eEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCCccccCCCCcceEEEecCCC
Q 017161 263 CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD--TLDPALLRPGRLDRKVEFGLPD 340 (376)
Q Consensus 263 sIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~--~ld~allr~gRfd~~i~~~~Pd 340 (376)
-+|+|||+..+.... ..+....+.++.... ..-++.+|++|.+|. .++..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~G----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKA----RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHC----TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHH----hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999886421 345556666666653 356899999999987 78888877 788889999999
Q ss_pred HHHHHHHHH
Q 017161 341 LESRTQIFK 349 (376)
Q Consensus 341 ~~~r~~Il~ 349 (376)
..+...||.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 988888873
No 144
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.76 E-value=7.2e-05 Score=72.97 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++-+...+..+..++..+. ...++.+|++|++.+
T Consensus 147 AL~~~P~lLLLDE----------Pts~LD~~~~~~l~~~l~~l~---~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 147 TLVAEPSVFLLDE----------PLSNLDAALRVQMRIEISRLH---KRLGRTMIYVTHDQV 195 (381)
T ss_dssp HHHHCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HHHCCEEEEECSCHH
T ss_pred HHHcCCCEEEEEC----------CCcCCCHHHHHHHHHHHHHHH---HhCCCEEEEEECCHH
Confidence 4446788999999 455568888888888887663 122466888888653
No 145
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.75 E-value=0.00012 Score=71.09 Aligned_cols=50 Identities=20% Similarity=0.362 Sum_probs=37.2
Q ss_pred HHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 256 ~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
.|....|.+|++|| +.++-++..+..++++|..+. ...++.||++|+..+
T Consensus 176 rAL~~~P~lLLlDE----------PTs~LD~~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 176 RALASNPKVLLCDQ----------ATSALDPATTRSILELLKDIN---RRLGLTILLITHEMD 225 (366)
T ss_dssp HHTTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HHSCCEEEEEESCHH
T ss_pred HHHhcCCCEEEEEC----------CCccCCHHHHHHHHHHHHHHH---HhCCCEEEEEecCHH
Confidence 34456789999999 455668999999999988763 123567888898754
No 146
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.75 E-value=5.9e-05 Score=70.05 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=35.3
Q ss_pred CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 261 ~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
.|.+|++|| +.++-+...+..+.+++..+. ..++..||++|+..+
T Consensus 165 ~p~lLllDE----------Pts~LD~~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDE----------PTSALDLYHQQHTLRLLRQLT---RQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECC----------CCSSCCHHHHHHHHHHHHHHH---HHSSEEEEEECSCHH
T ss_pred CCCEEEEeC----------ccccCCHHHHHHHHHHHHHHH---HcCCCEEEEEEcCHH
Confidence 899999999 556678999999999888763 234567889999754
No 147
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.75 E-value=8.1e-05 Score=67.10 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh----cCCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR----TDACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~----l~~~~i~v~~ 235 (376)
|+++..-++|+|+||+|||++|..+|.. .+.+.+.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 6778888999999999999999887643 2556655553
No 148
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.74 E-value=0.00014 Score=65.70 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=34.7
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
....|.++++|| +.++-|...+..+.+++..+. .. +..||++|+..+
T Consensus 155 l~~~p~lllLDE----------Pt~~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 155 LANEPILLFADE----------PTGNLDSANTKRVMDIFLKIN---EG-GTSIVMVTHERE 201 (224)
T ss_dssp TTTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHH
T ss_pred HHcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHH
Confidence 346688999999 455668889999999888763 12 456888888643
No 149
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.73 E-value=6.8e-05 Score=71.09 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=25.9
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+++...+.|.||+|+|||||++.+++.+
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345677889999999999999999999854
No 150
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=2e-05 Score=69.50 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
.+.+...++|.|||||||||+++++|..++.+++. ..++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~--~d~~~~ 61 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFID--LDWYIE 61 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc--chHHHH
Confidence 34566789999999999999999999999988754 444433
No 151
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.73 E-value=0.00012 Score=68.17 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=36.4
Q ss_pred HHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 255 ~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
..|....|.+|++|| +.++-|...+..+.+++..+. ...+..||++|+..+
T Consensus 168 AraL~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~~~---~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 168 ARALIRKPRLLILDN----------ATSALDAGNQLRVQRLLYESP---EWASRTVLLITQQLS 218 (271)
T ss_dssp HHHHTTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHCT---TTTTSEEEEECSCHH
T ss_pred HHHHhcCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHH---hhcCCEEEEEeCCHH
Confidence 334456788999999 445568888999999888753 122556888888643
No 152
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.72 E-value=3.3e-05 Score=71.56 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=43.8
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcC---CceEEEechhh---h--------HhhhchhhHHHHHHHHHHHcCCCeE
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSEL---V--------QKYVGEGARMVRELFQMARSKKACI 264 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~---~~~i~v~~~el---~--------~~~~g~~~~~~~~lf~~a~~~~psI 264 (376)
+.+...++|.||+|+||||++++++..+. .--+.+....+ . +..+|.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 45566789999999999999999998642 11222222111 0 0011111123355566665568999
Q ss_pred EEEcCC
Q 017161 265 VFFDEV 270 (376)
Q Consensus 265 l~iDEi 270 (376)
|++||.
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999996
No 153
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.72 E-value=1.4e-05 Score=60.66 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 339 PDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 339 Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
.|.++|.+||+.|++++++..++|++.||+.|+|||||
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGA 38 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGA 38 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHH
T ss_pred CCHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHH
Confidence 37899999999999999988899999999999999997
No 154
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.69 E-value=0.00017 Score=69.86 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=24.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.+...+.|.||+|||||||++++|...
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44566678899999999999999999854
No 155
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.68 E-value=0.00016 Score=69.97 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=35.8
Q ss_pred HHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 255 QMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 255 ~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
..|....|.+|++|| +.++-|......+..++..+. ...+..+|++|+..+
T Consensus 145 ArAL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 145 ARALVKQPKVLLFDE----------PLSNLDANLRMIMRAEIKHLQ---QELGITSVYVTHDQA 195 (359)
T ss_dssp HHHHTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HHHCCEEEEEESCHH
T ss_pred HHHHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEcCCHH
Confidence 334457789999999 445568888888888887653 122456888888653
No 156
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.66 E-value=0.00037 Score=64.59 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=37.0
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
|....|.+|++|| +.++-|......+.+++..+. .. +..||++|+..+.+
T Consensus 152 aL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~---~~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 152 VIVHEPDILILDE----------PLVGLDREGKTDLLRIVEKWK---TL-GKTVILISHDIETV 201 (266)
T ss_dssp HHTTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCTTT
T ss_pred HHHcCCCEEEEcC----------ccccCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHH
Confidence 3346688999999 455668889999999988763 12 45688889887654
No 157
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.65 E-value=0.00017 Score=69.69 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=34.8
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++-|...+..+..+|..+. ...+..+|++|+..+
T Consensus 159 AL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 159 ALAPRPQVLLFDE----------PFAAIDTQIRRELRTFVRQVH---DEMGVTSVFVTHDQE 207 (355)
T ss_dssp HHTTCCSEEEEES----------TTCCSSHHHHHHHHHHHHHHH---HHHTCEEEEECSCHH
T ss_pred HHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEECCCHH
Confidence 4457789999999 445568888888888887653 112456888888653
No 158
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.65 E-value=3.1e-05 Score=66.72 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.5
Q ss_pred CCCCCceeeecCCCChHHHHHHH
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARA 221 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~Laka 221 (376)
+.++.-+.|.||+|+|||||+++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 34556789999999999999994
No 159
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.65 E-value=3e-05 Score=67.05 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=28.5
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v 233 (376)
++.++|.|||||||||+++.+|..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999888643
No 160
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.64 E-value=2.9e-05 Score=67.45 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=29.3
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
+..+..++|.|+||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4456679999999999999999999999877654
No 161
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.64 E-value=0.0001 Score=67.82 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=35.5
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++-|...+..+.+++..+. ...+..||++|+..+
T Consensus 142 aL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 142 AIASECKLILLDE----------PTSALDLANQDIVLSLLIDLA---QSQNMTVVFTTHQPN 190 (253)
T ss_dssp HHHTTCSEEEESS----------SSTTSCHHHHHHHHHHHHHHH---HTSCCEEEEEESCHH
T ss_pred HHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHH
Confidence 4446788999999 445568888999998888763 122456888888654
No 162
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.63 E-value=0.00026 Score=65.18 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=37.1
Q ss_pred HcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
-...|.+|++|| +.++-+...+..+.+++..+. .. +..||++|+..+.+
T Consensus 168 L~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 168 LMTNPKMIVMDE----------PIAGVAPGLAHDIFNHVLELK---AK-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHTCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCSTT
T ss_pred HHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHH
Confidence 346788999999 555678999999999988763 12 56688889887654
No 163
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.62 E-value=0.00011 Score=73.48 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=30.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~ 235 (376)
|+.++.-++|.|+||+|||+|+..+|... +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 68888889999999999999999998753 446666553
No 164
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.62 E-value=4.7e-05 Score=71.27 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=26.7
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.|+.+..-++|.||||+|||+|++.+|..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 477888889999999999999999999854
No 165
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.61 E-value=3e-05 Score=67.34 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=33.8
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
+.++..++|.||||+||||+++.++...+...+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4566679999999999999999999987777778876655
No 166
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.61 E-value=0.00019 Score=69.82 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=34.7
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++-|......+..+|..+. ...+..+|++|+..+
T Consensus 155 AL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 155 AIVVEPDVLLMDE----------PLSNLDAKLRVAMRAEIKKLQ---QKLKVTTIYVTHDQV 203 (372)
T ss_dssp HHTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HHHTCEEEEEESCHH
T ss_pred HHhcCCCEEEEcC----------CCccCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 4456788999999 445568888888888887653 122456888888653
No 167
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.61 E-value=0.00025 Score=65.51 Aligned_cols=46 Identities=26% Similarity=0.355 Sum_probs=34.4
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
...|.||++|| +.++-+......+.+++..+. . +..||++|++++.
T Consensus 171 ~~~p~lllLDE----------Pts~LD~~~~~~i~~~l~~l~----~-~~tviivtH~~~~ 216 (260)
T 2ghi_A 171 LKDPKIVIFDE----------ATSSLDSKTEYLFQKAVEDLR----K-NRTLIIIAHRLST 216 (260)
T ss_dssp HHCCSEEEEEC----------CCCTTCHHHHHHHHHHHHHHT----T-TSEEEEECSSGGG
T ss_pred HcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHhc----C-CCEEEEEcCCHHH
Confidence 35678999999 455568888999999988773 2 3568888887654
No 168
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.61 E-value=8.4e-05 Score=84.51 Aligned_cols=127 Identities=21% Similarity=0.207 Sum_probs=82.4
Q ss_pred hhhhHhcCC---CCCCceeeecCCCChHHHHHHHHHHh---cCCceEEEechhh-----hHh-----------hhchhhH
Q 017161 191 PEKFVKLGI---DPPKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSEL-----VQK-----------YVGEGAR 248 (376)
Q Consensus 191 ~~~~~~~g~---~~~~~vLL~GppGtGKT~LakalA~~---l~~~~i~v~~~el-----~~~-----------~~g~~~~ 248 (376)
+.+-..+|. +..+.+.+|||+|||||+||-.++.+ .+.....++...- ..+ +...++.
T Consensus 1417 ~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~ 1496 (1706)
T 3cmw_A 1417 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1496 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHH
T ss_pred HHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHH
Confidence 334444543 34455999999999999999877653 3666677765421 111 2344577
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 249 MVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 249 ~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
.+.-+...++..++++|++|-+.++.+...-.+..++. -..+.|.+.|..+.+.-...++.+|++....
T Consensus 1497 ~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~ 1568 (1706)
T 3cmw_A 1497 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 1568 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC
T ss_pred HHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccc
Confidence 77778888899999999999999998765322111111 1345566777766665556677777776543
No 169
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.60 E-value=0.00026 Score=71.55 Aligned_cols=76 Identities=14% Similarity=0.314 Sum_probs=52.3
Q ss_pred CCe-EEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC--CCCccccCCCCcceEEEec
Q 017161 261 KAC-IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD--TLDPALLRPGRLDRKVEFG 337 (376)
Q Consensus 261 ~ps-Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~--~ld~allr~gRfd~~i~~~ 337 (376)
.|. +|+|||+..+.... ..++...+..+.... ..-++.+|++|+++. .++..++. -|...|.|.
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 354 89999998774310 123333344443332 234788999999986 67777776 788889999
Q ss_pred CCCHHHHHHHHH
Q 017161 338 LPDLESRTQIFK 349 (376)
Q Consensus 338 ~Pd~~~r~~Il~ 349 (376)
..+..+...|+.
T Consensus 363 v~s~~dsr~ilg 374 (512)
T 2ius_A 363 VSSKIDSRTILD 374 (512)
T ss_dssp CSSHHHHHHHHS
T ss_pred cCCHHHHHHhcC
Confidence 999999888874
No 170
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.59 E-value=0.00015 Score=66.54 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=33.0
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
..+..++|.|+||+||||+++.++..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 456679999999999999999999999876777777665
No 171
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.59 E-value=0.00024 Score=68.54 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++-|......+..++..+. ...+..+|++|+..+
T Consensus 141 aL~~~P~lLLLDE----------P~s~LD~~~~~~l~~~l~~l~---~~~g~tii~vTHd~~ 189 (348)
T 3d31_A 141 ALVTNPKILLLDE----------PLSALDPRTQENAREMLSVLH---KKNKLTVLHITHDQT 189 (348)
T ss_dssp HTTSCCSEEEEES----------SSTTSCHHHHHHHHHHHHHHH---HHTTCEEEEEESCHH
T ss_pred HHHcCCCEEEEEC----------ccccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 4446788999999 444568888888888887763 122456888888653
No 172
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.58 E-value=0.00018 Score=69.69 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=24.6
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.+...+.|.||+|||||||++++|...
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34566678899999999999999999854
No 173
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.57 E-value=0.00017 Score=65.84 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=35.1
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|-...|.++++|| +.++-|...+..+.+++..+. ...+..||++|+..+
T Consensus 140 al~~~p~lllLDE----------Pts~LD~~~~~~~~~~l~~l~---~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 140 ALVIQPRLLLLDE----------PLSAVDLKTKGVLMEELRFVQ---REFDVPILHVTHDLI 188 (240)
T ss_dssp HHTTCCSSBEEES----------TTSSCCHHHHHHHHHHHHHHH---HHHTCCEEEEESCHH
T ss_pred HHHcCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHH
Confidence 4456788999999 455668889999998887763 111345788888654
No 174
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.56 E-value=0.0003 Score=71.48 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=68.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh----hHhh--hc----------------------hh
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL----VQKY--VG----------------------EG 246 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el----~~~~--~g----------------------~~ 246 (376)
++.+...++|.||+|+|||+|++.++... +...+.+...+- .... .| .+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 66777889999999999999999999754 444444443221 1000 00 12
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 247 ~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
....+.++..+....|.+|+||=+..+-.. ....+....+.+++..+. ..++.||++++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~------~~~~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG------VSNNAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS------SCHHHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh------CChHHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 334566677777788999999966555221 011335666667776654 2356677777654
No 175
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.56 E-value=0.0004 Score=64.30 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=35.9
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++-|...+..+.+++..+. .. +..||++|+..+
T Consensus 173 aL~~~p~lllLDE----------Pts~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~ 220 (263)
T 2olj_A 173 ALAMEPKIMLFDE----------PTSALDPEMVGEVLSVMKQLA---NE-GMTMVVVTHEMG 220 (263)
T ss_dssp HHTTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHH
T ss_pred HHHCCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHH
Confidence 3446788999999 455678999999999988763 12 566888888654
No 176
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.56 E-value=0.00016 Score=67.69 Aligned_cols=39 Identities=31% Similarity=0.481 Sum_probs=31.4
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
..+..++|.||||+||||+++.++..++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 345678999999999999999999988656677776444
No 177
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.55 E-value=0.00034 Score=71.04 Aligned_cols=114 Identities=22% Similarity=0.242 Sum_probs=70.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHH--HHhc--CCceEEEechhhhHh------hhch----------------------
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAV--ANRT--DACFIRVIGSELVQK------YVGE---------------------- 245 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~Lakal--A~~l--~~~~i~v~~~el~~~------~~g~---------------------- 245 (376)
++.+...++|.||+|||||||++.+ +... +...+.+++.+.... .+|-
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 4567788999999999999999994 4432 344555554331100 0000
Q ss_pred --------hhHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 246 --------GARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 246 --------~~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
................|.+|+||+.-++.+. .+.+...++.+..++..+. ..++.||++|++.
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~----~~g~tvl~itH~~ 185 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLK----QIGATTVMTTERI 185 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHH----HHTCEEEEEEECS
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHH----HCCCEEEEEecCC
Confidence 0112233344444567889999998776432 1235667777888887764 1356788888887
Q ss_pred CCC
Q 017161 318 DTL 320 (376)
Q Consensus 318 ~~l 320 (376)
+.+
T Consensus 186 ~~~ 188 (525)
T 1tf7_A 186 EEY 188 (525)
T ss_dssp SSS
T ss_pred CCc
Confidence 664
No 178
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.53 E-value=0.00017 Score=66.25 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=24.8
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||++.++...
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34566778999999999999999999865
No 179
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.53 E-value=0.00049 Score=63.67 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=34.7
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
|....|.++++|| +.++-+......+.+++..+.. .||++|+..+.
T Consensus 142 aL~~~p~lllLDE----------Pts~LD~~~~~~l~~~L~~~~~-------tviivtHd~~~ 187 (263)
T 2pjz_A 142 ALASQPEIVGLDE----------PFENVDAARRHVISRYIKEYGK-------EGILVTHELDM 187 (263)
T ss_dssp HHHTCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHSCS-------EEEEEESCGGG
T ss_pred HHHhCCCEEEEEC----------CccccCHHHHHHHHHHHHHhcC-------cEEEEEcCHHH
Confidence 3446788999999 4556689999999999887642 68888887543
No 180
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.52 E-value=5.9e-05 Score=64.37 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=29.0
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
+..+.|.||+||||||+++.+|..++..+ ++...+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~--id~d~~~ 39 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF--YDSDQEI 39 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEE--EEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE--EeccHHH
Confidence 35699999999999999999999998755 4544443
No 181
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.52 E-value=7.3e-05 Score=64.44 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=28.5
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
..+..++|+|+||+||||+++.++..++..++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 345679999999999999999999999877654
No 182
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.51 E-value=5.9e-05 Score=73.46 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=47.0
Q ss_pred hHhcCCCCCCceeeecCCCChHHHHHHHHHHhcC----CceEEEech-hh---------hHhhhchhhHHHHHHHHHHHc
Q 017161 194 FVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGS-EL---------VQKYVGEGARMVRELFQMARS 259 (376)
Q Consensus 194 ~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~----~~~i~v~~~-el---------~~~~~g~~~~~~~~lf~~a~~ 259 (376)
+..+.+.+...++|.||+|+||||+++++++.+. ..++.+..+ ++ .+..+|.....++..+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3444456666799999999999999999998652 223222211 10 000011111233455666666
Q ss_pred CCCeEEEEcCC
Q 017161 260 KKACIVFFDEV 270 (376)
Q Consensus 260 ~~psIl~iDEi 270 (376)
..|.+|++||+
T Consensus 208 ~~pd~illdE~ 218 (372)
T 2ewv_A 208 EDPDVIFVGEM 218 (372)
T ss_dssp SCCSEEEESCC
T ss_pred hCcCEEEECCC
Confidence 78999999997
No 183
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.50 E-value=0.0003 Score=64.58 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.9
Q ss_pred CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 260 ~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
..|.+|++||- .++-|...+..+.+++..+. ..+..||++|+..+.
T Consensus 160 ~~p~lllLDEP----------ts~LD~~~~~~l~~~l~~l~----~~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 160 LEPTYAVLDET----------DSGLDIDALKVVARGVNAMR----GPNFGALVITHYQRI 205 (250)
T ss_dssp HCCSEEEEECG----------GGTTCHHHHHHHHHHHHHHC----STTCEEEEECSSSGG
T ss_pred cCCCEEEEeCC----------CcCCCHHHHHHHHHHHHHHH----hcCCEEEEEecCHHH
Confidence 45779999994 34468888999999988874 135568888887643
No 184
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.49 E-value=0.0002 Score=69.73 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++-|...+..+..++..+. ...+..+|++|+..+
T Consensus 153 AL~~~P~lLLLDE----------P~s~LD~~~r~~l~~~l~~l~---~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 153 AIVRKPQVFLMDE----------PLSNLDAKLRVRMRAELKKLQ---RQLGVTTIYVTHDQV 201 (372)
T ss_dssp HHHTCCSEEEEEC----------TTTTSCHHHHHHHHHHHHHHH---HHHTCEEEEEESCHH
T ss_pred HHhcCCCEEEECC----------CCccCCHHHHHHHHHHHHHHH---HhcCCEEEEECCCHH
Confidence 4446788999999 445568888888888887653 112456788888653
No 185
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.48 E-value=0.00018 Score=70.44 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHh
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
.+.+...+.|.||+|||||||++++|..
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 4567778999999999999999999974
No 186
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.48 E-value=0.00033 Score=75.61 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHh-----cCCc--------------eEEEechhhhHhhhchhhHHHHHHHHHH-H
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANR-----TDAC--------------FIRVIGSELVQKYVGEGARMVRELFQMA-R 258 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~-----l~~~--------------~i~v~~~el~~~~~g~~~~~~~~lf~~a-~ 258 (376)
+.....++|.||.|+||||+.|.++.- .+.. |-.+...+...........-++++...+ .
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh
Confidence 344567899999999999999998742 1211 1111111111111111111112222222 2
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTML-EIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~-~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
...|++|+|||.-+ +.++.....+. .++..+. ...++.+|++|+..+.
T Consensus 750 a~~p~LlLLDEP~~----------GlD~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 750 ATSQSLVILDELGR----------GTSTHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPV 798 (918)
T ss_dssp CCTTCEEEEESTTT----------TSCHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGG
T ss_pred ccCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHH
Confidence 57889999999643 34665555554 6666542 1235678899987643
No 187
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.48 E-value=4.7e-05 Score=66.24 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=29.0
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHh-cCCceEEEechhh
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANR-TDACFIRVIGSEL 238 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~-l~~~~i~v~~~el 238 (376)
..+..++|+|+|||||||+++.+|.. ++.++ ++..++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~--id~d~~ 45 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQH--LEVGKL 45 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEE--EEHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEE--eeHHHH
Confidence 34557999999999999999999998 67555 444444
No 188
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.47 E-value=0.00024 Score=63.71 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=24.8
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||+++++...
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566778999999999999999999854
No 189
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.47 E-value=0.00035 Score=71.88 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=25.8
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 345677789999999999999999999864
No 190
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.47 E-value=6.1e-05 Score=63.96 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=27.2
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
.++|.|||||||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998875544
No 191
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.47 E-value=0.00044 Score=62.53 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=68.5
Q ss_pred ceeeecCCCChHHHHHHHHHHhc---CCceEEEech--------hhhHhhh----------ch--hhHHHHHHHHHHHcC
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS--------ELVQKYV----------GE--GARMVRELFQMARSK 260 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~--------el~~~~~----------g~--~~~~~~~lf~~a~~~ 260 (376)
.+++.|+|||||||++-.+|..+ |..++.++.. .+..... +. .+..+..++. .
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~----~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK----A 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----H
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----c
Confidence 58999999999999999998865 5555544442 1211100 00 1112233222 3
Q ss_pred CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC------------------CCCCc
Q 017161 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP------------------DTLDP 322 (376)
Q Consensus 261 ~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~------------------~~ld~ 322 (376)
.|.++++||+-...... .......+.+..++. .++-|++|+|.. +.++.
T Consensus 84 ~pdlvIVDElG~~~~~~-----~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPG-----SRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCTT-----CSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCccc-----chhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 58899999986542111 112222222223222 344588888821 34455
Q ss_pred cccCCCCcceEEEecCCCHHHHHH
Q 017161 323 ALLRPGRLDRKVEFGLPDLESRTQ 346 (376)
Q Consensus 323 allr~gRfd~~i~~~~Pd~~~r~~ 346 (376)
.++. +.|.+.-++.|..+-+.+
T Consensus 151 ~~~~--~a~~v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRELLER 172 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHHHHHH
T ss_pred HHHh--hCCeEEEecCCHHHHHHH
Confidence 5555 667777778776664444
No 192
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.47 E-value=6.8e-05 Score=71.82 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=48.1
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcC--CceEEEechh-hh----Hh---hhchhhHHHHHHHHHHHcCCCeEEEEcC
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSE-LV----QK---YVGEGARMVRELFQMARSKKACIVFFDE 269 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~--~~~i~v~~~e-l~----~~---~~g~~~~~~~~lf~~a~~~~psIl~iDE 269 (376)
.+...++|.||+|+|||||+++++.... .-.+.+.... +. .. ++..+....+..+..|....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 4567899999999999999999999763 2344444321 10 00 1100223446667777788899999999
Q ss_pred Cc
Q 017161 270 VD 271 (376)
Q Consensus 270 iD 271 (376)
.-
T Consensus 249 ~~ 250 (330)
T 2pt7_A 249 LR 250 (330)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 193
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.44 E-value=8.1e-05 Score=63.91 Aligned_cols=34 Identities=35% Similarity=0.518 Sum_probs=28.4
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
.++|.|+|||||||+++.+|..++.+++ +...+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~--d~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL--DSDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE--cccHHH
Confidence 5899999999999999999999998765 444443
No 194
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.44 E-value=0.00052 Score=62.53 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=35.0
Q ss_pred HHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 257 ARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 257 a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|....|.+|++|| +.++-+...+..+.+++..+.. .+..||++|+..+
T Consensus 153 aL~~~p~lllLDE----------Pts~LD~~~~~~l~~~l~~~~~----~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 153 ALMSRPKLLMMDE----------PSLGLAPILVSEVFEVIQKINQ----EGTTILLVEQNAL 200 (240)
T ss_dssp HHTTCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH----TTCCEEEEESCHH
T ss_pred HHHcCCCEEEEcC----------CcccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHH
Confidence 3346688999999 4556789999999999887641 2445777888653
No 195
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.44 E-value=0.00043 Score=71.49 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=37.7
Q ss_pred HHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 253 lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
.+..|--..|.|+++||. .++-|......+.+.+..+. .+..+|+.|++.+.+
T Consensus 501 ~iAral~~~p~illlDEp----------ts~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 501 AITRAFLANPKILILDEA----------TSNVDTKTEKSIQAAMWKLM-----EGKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHHHTCCSEEEECCC----------CTTCCHHHHHHHHHHHHHHH-----TTSEEEEESCCTTHH
T ss_pred HHHHHHhcCCCEEEEECC----------ccCCCHHHHHHHHHHHHHHc-----CCCEEEEEecCHHHH
Confidence 344445578889999994 44568888888888887763 245678889887643
No 196
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.43 E-value=0.00031 Score=65.61 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=24.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.+...+.|.||+|+|||||++.++...
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34566778999999999999999999854
No 197
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.42 E-value=0.00042 Score=64.05 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=34.3
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
...|.+|++|| +.++-|...+..+.+++..+. .. +..||++|+..+
T Consensus 169 ~~~p~lllLDE----------Pts~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~ 214 (262)
T 1b0u_A 169 AMEPDVLLFDE----------PTSALDPELVGEVLRIMQQLA---EE-GKTMVVVTHEMG 214 (262)
T ss_dssp HTCCSEEEEES----------TTTTSCHHHHHHHHHHHHHHH---HT-TCCEEEECSCHH
T ss_pred hcCCCEEEEeC----------CCccCCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHH
Confidence 35688999999 455668999999999988763 12 455788888653
No 198
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.41 E-value=0.00028 Score=64.97 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=31.0
Q ss_pred CCceeeecCCCChHHHHHHHHHHh---cCCceEEEechhhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANR---TDACFIRVIGSELV 239 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~---l~~~~i~v~~~el~ 239 (376)
+..|+|.|+||+||||+++.++.. .+..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 446899999999999999999997 67777766665554
No 199
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.41 E-value=0.00025 Score=70.53 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=30.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~ 235 (376)
|+.++.-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68888889999999999999999988743 456666654
No 200
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.40 E-value=0.00088 Score=59.15 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=67.7
Q ss_pred CceeeecCCCChHHHHHHHHHHhc---CCceEEEech---------hhhHhhh-------------c----hhhHHHHHH
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS---------ELVQKYV-------------G----EGARMVREL 253 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~---------el~~~~~-------------g----~~~~~~~~l 253 (376)
..+++|+++|.||||+|-++|-+. |..+..+... .++..+. . +........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468999999999999999998764 5555555211 2333320 0 011233444
Q ss_pred HHHHH----cCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 017161 254 FQMAR----SKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGR 329 (376)
Q Consensus 254 f~~a~----~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gR 329 (376)
+..++ ...+++|+|||+-....-..- + ...+++++.. ...+.-||+|+|.+ +++|+. .
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l-----~---~~ev~~~l~~-----Rp~~~~vIlTGr~a---p~~l~e--~ 170 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL-----P---LEEVISALNA-----RPGHQTVIITGRGC---HRDILD--L 170 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS-----C---HHHHHHHHHT-----SCTTCEEEEECSSC---CHHHHH--H
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC-----C---HHHHHHHHHh-----CcCCCEEEEECCCC---cHHHHH--h
Confidence 44444 356789999999554222111 1 1334555542 34567799999975 455554 5
Q ss_pred cceEEEe
Q 017161 330 LDRKVEF 336 (376)
Q Consensus 330 fd~~i~~ 336 (376)
-|.+-++
T Consensus 171 AD~VTem 177 (196)
T 1g5t_A 171 ADTVSEL 177 (196)
T ss_dssp CSEEEEC
T ss_pred Ccceeee
Confidence 5555554
No 201
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.39 E-value=0.00011 Score=63.43 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=29.0
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
..++|.|+|||||||+++.+|..++.+++. ...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~ 37 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAI 37 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHH
Confidence 358999999999999999999999988754 44443
No 202
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.39 E-value=0.00019 Score=69.37 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=24.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.+...+.|.||+|||||||++++|...
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45666778899999999999999999853
No 203
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.38 E-value=0.00042 Score=65.72 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=30.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
|+.+..-++|.|+||+|||+++..+|... +.+.+.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 68888889999999999999999998653 345555553
No 204
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.35 E-value=0.0011 Score=65.88 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=49.0
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhh-------Hh-------------hhchhhHHHHHHHHHH
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV-------QK-------------YVGEGARMVRELFQMA 257 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~-------~~-------------~~g~~~~~~~~lf~~a 257 (376)
+|..+++.|++|+||||++..+|..+ +.....+.+.... .. ........++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46678999999999999999999765 5555555543210 00 0112334456777778
Q ss_pred HcCCCeEEEEcCCccc
Q 017161 258 RSKKACIVFFDEVDAI 273 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l 273 (376)
....+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777889999987543
No 205
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.35 E-value=0.00011 Score=62.45 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=30.3
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
..++|.|++||||||+++.+|..++.+++. ..++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id--~D~~~~~ 44 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD--TDMIISE 44 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 469999999999999999999999988754 4444433
No 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.35 E-value=0.00066 Score=73.85 Aligned_cols=44 Identities=30% Similarity=0.300 Sum_probs=36.0
Q ss_pred ccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHh
Q 017161 170 VGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 170 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
.+|.+..+++|.+.+.. ....+-+.|+||.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLE------------LRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHH------------CCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhc------------cCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 38999999999988853 123467899999999999999999863
No 207
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.34 E-value=0.00022 Score=64.15 Aligned_cols=41 Identities=17% Similarity=0.358 Sum_probs=32.6
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
++.++-++|.||||+||+|.|+.||..++.+. ++..+++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR~ 66 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLRA 66 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHHH
Confidence 45567789999999999999999999997654 555665543
No 208
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.34 E-value=0.00063 Score=69.98 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=25.7
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345677789999999999999999999854
No 209
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.34 E-value=0.00031 Score=72.41 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=36.1
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+..|--..|.|+++||- .++-|+.....+.+.+..+. .+..+|+.|++.+
T Consensus 490 lARal~~~p~illlDEp----------ts~LD~~~~~~i~~~l~~~~-----~~~tvi~itH~l~ 539 (587)
T 3qf4_A 490 IARALVKKPKVLILDDC----------TSSVDPITEKRILDGLKRYT-----KGCTTFIITQKIP 539 (587)
T ss_dssp HHHHHHTCCSEEEEESC----------CTTSCHHHHHHHHHHHHHHS-----TTCEEEEEESCHH
T ss_pred HHHHHHcCCCEEEEECC----------cccCCHHHHHHHHHHHHHhC-----CCCEEEEEecChH
Confidence 33444567889999994 44568888888888887763 2456788888764
No 210
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.33 E-value=0.00015 Score=63.62 Aligned_cols=31 Identities=35% Similarity=0.443 Sum_probs=27.0
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
+..++|.|+|||||||+++.++..++.+++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 4568999999999999999999999877644
No 211
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.32 E-value=0.00014 Score=64.93 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=27.5
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
++..++|.|+|||||||+++.+|..++.+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 34679999999999999999999999876543
No 212
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.32 E-value=0.00064 Score=73.54 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=53.8
Q ss_pred CCceeeecCCCChHHHHHHHHHHh-----cCCce--------------EEEechhhhHhhhchhhHHHHHHHHHH-HcCC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANR-----TDACF--------------IRVIGSELVQKYVGEGARMVRELFQMA-RSKK 261 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~-----l~~~~--------------i~v~~~el~~~~~g~~~~~~~~lf~~a-~~~~ 261 (376)
+..++|.||.|+||||++|.+|.- .|..+ -++...+..............++...+ ....
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccC
Confidence 456899999999999999999532 22211 111111111111111111111211111 2477
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTM-LEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l-~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|++|+|||.-+ +.++.....+ ..++..+. ...+..+|++|+..+
T Consensus 742 ~sLlLLDEp~~----------GlD~~~~~~i~~~il~~l~---~~~g~~vl~aTH~~e 786 (934)
T 3thx_A 742 DSLIIIDELGR----------GTSTYDGFGLAWAISEYIA---TKIGAFCMFATHFHE 786 (934)
T ss_dssp TCEEEEESCSC----------SSCHHHHHHHHHHHHHHHH---HTTCCEEEEEESCGG
T ss_pred CcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH---hcCCCEEEEEcCcHH
Confidence 89999999643 3455444444 55555543 123567888998754
No 213
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.31 E-value=0.00012 Score=67.36 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=28.3
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEec
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~ 235 (376)
.++|.|||||||||+|+.+|..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988876654
No 214
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.31 E-value=0.00014 Score=63.13 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=30.3
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
.+..++|.|+|||||||+++.+|..++.+++ +..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i--~~d~~~~ 45 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHL--STGDLLR 45 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHH
Confidence 4567999999999999999999999987654 4444443
No 215
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.31 E-value=0.0002 Score=73.73 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=41.7
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhhHhh----hchhhHHHHHHHHHH---------HcCCCeEE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELVQKY----VGEGARMVRELFQMA---------RSKKACIV 265 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~~~~----~g~~~~~~~~lf~~a---------~~~~psIl 265 (376)
...++|.||||||||+++.+++..+ +..++.+..+.-.... .+.....+..++... ......+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 3578999999999999999998754 5555544332221111 111111222222110 11235799
Q ss_pred EEcCCccc
Q 017161 266 FFDEVDAI 273 (376)
Q Consensus 266 ~iDEiD~l 273 (376)
++||+..+
T Consensus 284 IIDEasml 291 (574)
T 3e1s_A 284 IVDEVSMM 291 (574)
T ss_dssp EECCGGGC
T ss_pred EEcCccCC
Confidence 99999877
No 216
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.31 E-value=0.00017 Score=63.39 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=27.3
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
+..++|.|++|+||||+++.++..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999876654
No 217
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.30 E-value=9.8e-05 Score=63.76 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=27.9
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
+..++|.|+|||||||+++.+|..++.++ ++..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~--i~~d~~ 38 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKK--LSTGDI 38 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEE--ECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHH
Confidence 34589999999999999999999988655 444443
No 218
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.30 E-value=0.0011 Score=68.30 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=25.9
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 345677789999999999999999999864
No 219
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=0.00013 Score=63.12 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=29.1
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
+..|+|.|+|||||||+++.++..++.++ ++..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~--i~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE--EeHHHHH
Confidence 45689999999999999999999998765 4444443
No 220
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.28 E-value=0.00017 Score=61.37 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=28.6
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
+.++|.|+|||||||+++.++..++.+++ +...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i--d~d~~~ 37 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFV--DTDIFM 37 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE--cccHHH
Confidence 35899999999999999999999987765 444443
No 221
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.27 E-value=0.00012 Score=63.04 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=23.3
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i 231 (376)
+..++|.|+|||||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999998876
No 222
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.27 E-value=0.00015 Score=65.05 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=27.2
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
..+..++|.|+|||||||+++.+|..++..++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 345679999999999999999999999876543
No 223
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00063 Score=70.36 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 256 ~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
.|....|.+|+||| +.++-+......+.+++..+. ..+..||++|++.+.
T Consensus 234 raL~~~p~llllDE----------Pts~LD~~~~~~l~~~l~~l~----~~g~tvi~vtHdl~~ 283 (608)
T 3j16_B 234 MSCVQEADVYMFDE----------PSSYLDVKQRLNAAQIIRSLL----APTKYVICVEHDLSV 283 (608)
T ss_dssp HHHHSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHGGG----TTTCEEEEECSCHHH
T ss_pred HHHHhCCCEEEEEC----------cccCCCHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHH
Confidence 34457788999999 455668888888888888774 224568888887543
No 224
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.26 E-value=0.00018 Score=63.21 Aligned_cols=37 Identities=32% Similarity=0.555 Sum_probs=28.9
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
.++..+.|.||+|+||||+++.++..++..+ +++..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 3456789999999999999999999986544 455443
No 225
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.25 E-value=0.00016 Score=61.02 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=27.0
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
.++|.|||||||||+++.+ ..++.+++. ..++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~--~~~~~~ 36 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV--MSDVVR 36 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE--HhHHHH
Confidence 4789999999999999999 888877654 344443
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.25 E-value=0.0015 Score=64.75 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=45.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh-------hH---hhhc----------hhhHHHHHHHHHH
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL-------VQ---KYVG----------EGARMVRELFQMA 257 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el-------~~---~~~g----------~~~~~~~~lf~~a 257 (376)
++..+++.||+|+||||++..+|..+ +.....+.+... .. ...| .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678899999999999999999765 555554443211 00 1101 1222334455566
Q ss_pred HcCCCeEEEEcCCccc
Q 017161 258 RSKKACIVFFDEVDAI 273 (376)
Q Consensus 258 ~~~~psIl~iDEiD~l 273 (376)
....+.+|++|....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6667889999987543
No 227
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.24 E-value=0.0024 Score=60.40 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=45.5
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhhh-------Hhh-------------hchhhHHHHHHHHH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSELV-------QKY-------------VGEGARMVRELFQM 256 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el~-------~~~-------------~g~~~~~~~~lf~~ 256 (376)
.++..++|.||+|+||||++..+|..+ +.....+++.... ..+ .++........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456678999999999999999999865 4444444432110 011 01222233344555
Q ss_pred HHcCCCeEEEEcCCc
Q 017161 257 ARSKKACIVFFDEVD 271 (376)
Q Consensus 257 a~~~~psIl~iDEiD 271 (376)
+....|.+++||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 666788899999864
No 228
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.24 E-value=0.00011 Score=62.75 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=25.9
Q ss_pred CceeeecCCCChHHHHHHHHHH-hcCCceEEEechhh
Q 017161 203 KGVLCYGPPGTGKTLLARAVAN-RTDACFIRVIGSEL 238 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~-~l~~~~i~v~~~el 238 (376)
..++|.|+||+||||+++.++. .++. ..++...+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~--~~i~~d~~ 37 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDY 37 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc--EEecHHHH
Confidence 4589999999999999999998 4543 44444443
No 229
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.24 E-value=0.00018 Score=62.06 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=29.1
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
+..++|.|+|||||||+++.++..++.+++ +..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~~ 42 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLLR 42 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe--eHHHHHH
Confidence 456899999999999999999999986554 4444433
No 230
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.23 E-value=0.00033 Score=69.88 Aligned_cols=89 Identities=25% Similarity=0.328 Sum_probs=62.9
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-------------CCCCCccccCCC
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNR-------------PDTLDPALLRPG 328 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~-------------~~~ld~allr~g 328 (376)
|.|+||||+|.+ +.+.++.|+..+++ +..++ +|++||. +..++|.+++
T Consensus 296 ~~VliIDEa~~l-----------~~~a~~aLlk~lEe-----~~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s-- 356 (456)
T 2c9o_A 296 PGVLFVDEVHML-----------DIECFTYLHRALES-----SIAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLD-- 356 (456)
T ss_dssp ECEEEEESGGGC-----------BHHHHHHHHHHTTS-----TTCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHT--
T ss_pred ceEEEEechhhc-----------CHHHHHHHHHHhhc-----cCCCE-EEEecCCccccccccccccccccCChhHHh--
Confidence 359999999999 56677777666543 23444 5545533 6789999999
Q ss_pred CcceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHC
Q 017161 329 RLDRKVEFGLPDLESRTQIFKIHTRTMNCE-RDIRFELLARLC 370 (376)
Q Consensus 329 Rfd~~i~~~~Pd~~~r~~Il~~~~~~~~~~-~~vdl~~lA~~t 370 (376)
||.. +.|++|+.++..++++..+...+.. .+..+..+++.+
T Consensus 357 R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a 398 (456)
T 2c9o_A 357 RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIG 398 (456)
T ss_dssp TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 9965 6999999999999999887543332 222356666655
No 231
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.21 E-value=0.00017 Score=64.44 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=27.2
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v 233 (376)
...++|.|+|||||||+++.+|..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34689999999999999999999998766543
No 232
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.21 E-value=0.00019 Score=61.44 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=27.9
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
+..++|.||+|+||||+++.++..++..+ ++...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 44688999999999999999999887554 444443
No 233
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.21 E-value=0.00017 Score=62.31 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.5
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
+..++|.|+|||||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999999886
No 234
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.20 E-value=0.0002 Score=62.37 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=29.0
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
+..++|.|+|||||||+++.++..++.++ ++..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~--i~~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTH--LSTGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE--EcHHHHH
Confidence 45799999999999999999999998655 4444443
No 235
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.19 E-value=0.00085 Score=60.63 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=25.1
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.+...+.|.||+|+|||||+++++...
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567779999999999999999999864
No 236
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.18 E-value=0.00025 Score=63.94 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=29.2
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
+..++|.|+|||||||+++.||..++..++ +..+++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i--~~d~li 51 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHL--ATGDML 51 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcee--cHHHHH
Confidence 456999999999999999999999987664 444443
No 237
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.18 E-value=0.00023 Score=63.11 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=25.8
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEE
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v 233 (376)
.++|.|||||||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998766543
No 238
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.16 E-value=0.00024 Score=62.93 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.9
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEE
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v 233 (376)
.++|.|||||||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998776543
No 239
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.16 E-value=0.00028 Score=60.68 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=31.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el 238 (376)
++..+.|.|++||||||+++.++..+ +.+++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 34568899999999999999999987 888888875443
No 240
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.16 E-value=0.0002 Score=63.97 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=26.9
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceE
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i 231 (376)
.+..++|.|||||||||+++.+|..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3467999999999999999999999986553
No 241
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.15 E-value=0.00027 Score=59.90 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=25.9
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
.++|.|+|||||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999977654
No 242
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.15 E-value=0.00023 Score=64.81 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=30.8
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
.++..++|.||||+||||+++.++..++.+++ +..++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r 65 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLR 65 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHH
Confidence 35667999999999999999999999876654 4444443
No 243
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.14 E-value=0.00031 Score=61.77 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el 238 (376)
.++..+.|.||+||||||+++++|..+ |...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456678899999999999999999987 544446665554
No 244
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.13 E-value=0.0017 Score=73.08 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=26.9
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
+.++++..+.|.||+|+|||||++++.+.+.
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4467788899999999999999999998753
No 245
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.13 E-value=0.00026 Score=62.07 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=29.1
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
+..|+|.|++||||||+++.++..++.+++ +..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i--~~d~~~~ 51 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHL--SAGDLLR 51 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEE--EHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEE--eHHHHHH
Confidence 346889999999999999999999987554 4444443
No 246
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.12 E-value=0.00029 Score=64.02 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=26.9
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceE
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFI 231 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i 231 (376)
.+..+.|.||+|+||||+++.++..++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3567999999999999999999998876654
No 247
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.10 E-value=0.001 Score=70.75 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=39.9
Q ss_pred cCCCCCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHh
Q 017161 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 161 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
..+..+|++++-.....+.+.+.-.+|......--...+.....+++.||+|+|||+++..++..
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34455788776666666666655555543221111111233457999999999999977777543
No 248
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.10 E-value=0.00095 Score=67.30 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=30.8
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc----CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~ 235 (376)
|+.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 67777889999999999999999998754 446666654
No 249
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.10 E-value=0.00032 Score=60.51 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=27.9
Q ss_pred ceeeecCCCChHHHHHHHHHHhcC---CceEEEechhhh
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELV 239 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~---~~~i~v~~~el~ 239 (376)
.|+|.|+|||||||+++.++..++ ..+..++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 478999999999999999999875 235555554443
No 250
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.09 E-value=0.0003 Score=62.74 Aligned_cols=34 Identities=24% Similarity=0.537 Sum_probs=28.4
Q ss_pred eeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
++|.||||+||+|.|+.+|..++.+. ++..+++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 78899999999999999999998765 55566554
No 251
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.0014 Score=66.87 Aligned_cols=55 Identities=9% Similarity=0.092 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 251 RELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 251 ~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|-.+..|....|.||++|| +.++-|...+..+.+++..+. ...+..||++|+..+
T Consensus 393 Rv~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~~l~~l~---~~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQ----------PSSYLDVEERYIVAKAIKRVT---RERKAVTFIIDHDLS 447 (538)
T ss_dssp HHHHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHH---HHTTCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 4445556668899999999 566678888888888887763 123456777888643
No 252
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.07 E-value=0.00039 Score=60.76 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=28.6
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc-CCceEEEe
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT-DACFIRVI 234 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l-~~~~i~v~ 234 (376)
.+..+.|.|++||||||+++.++..+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35678999999999999999999998 46676655
No 253
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.07 E-value=0.0013 Score=59.56 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=29.3
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEech-hhhH
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELVQ 240 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~-el~~ 240 (376)
.++++||+|+|||.++.+++...+...+.+... .+..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 499999999999999999998887666666544 4443
No 254
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.07 E-value=0.001 Score=67.86 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=38.1
Q ss_pred HHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 253 lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
.+..|....|.+|++|| +.++-+...+..+.++|..+.. .+..||++|++.+
T Consensus 168 ~iAraL~~~P~lLlLDE----------PTs~LD~~~~~~l~~~L~~l~~----~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 168 AIAAALLRNATFYFFDE----------PSSYLDIRQRLNAARAIRRLSE----EGKSVLVVEHDLA 219 (538)
T ss_dssp HHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHH
T ss_pred HHHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEeCCHH
Confidence 34445557899999999 5556688888889888887741 2556888888644
No 255
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.06 E-value=0.00038 Score=61.95 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=28.3
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
..+.|.||+||||||+++.++..++.++ ++..++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~--~d~g~i~ 40 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHL--LDSGAIY 40 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCccee
Confidence 4688999999999999999999988665 4444443
No 256
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.05 E-value=3.3e-05 Score=58.52 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCCC
Q 017161 342 ESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGN 376 (376)
Q Consensus 342 ~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g~sGa 376 (376)
++|.+||+.|++++++..++|++.||+.|+|||||
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGA 35 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGA 35 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHH
Confidence 47899999999999988899999999999999997
No 257
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.04 E-value=0.001 Score=74.85 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=26.3
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+-|.||+|+|||||++++.+.+
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 456788889999999999999999999854
No 258
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.00 E-value=0.0015 Score=66.62 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=37.7
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+..|....|.||++|| +.++-+...+..+.+++..+. . +..||++|++.+
T Consensus 149 iA~aL~~~p~illlDE----------Pts~LD~~~~~~l~~~l~~l~----~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 149 VAASLLREADVYIFDQ----------PSSYLDVRERMNMAKAIRELL----K-NKYVIVVDHDLI 198 (538)
T ss_dssp HHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHHC----T-TSEEEEECSCHH
T ss_pred HHHHHHcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHh----C-CCEEEEEEeChH
Confidence 4445567899999999 555668888888999998874 2 456888888754
No 259
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.00 E-value=0.00029 Score=64.73 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
...+.|.|++|+||||+++.+|..++.+|+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 5679999999999999999999999987654
No 260
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.00 E-value=0.00021 Score=68.96 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=25.8
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
+++|+||+|+|||++++++|..++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 59999999999999999999998877743
No 261
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.99 E-value=0.00069 Score=59.53 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=26.5
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
.+.|.||+||||||+++.++. +|.+++ +...+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 478999999999999999998 776664 555543
No 262
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.99 E-value=0.00039 Score=60.57 Aligned_cols=29 Identities=14% Similarity=0.417 Sum_probs=25.7
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
.+.|.|++||||||+++.++..++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999886654
No 263
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.99 E-value=0.00081 Score=59.19 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=30.4
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhhc
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVG 244 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~g 244 (376)
.+.|.|++||||||+++.++..+|.++ +++..+.....+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~v--id~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHV--VNVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEE--EECcHHHHHHHH
Confidence 478999999999999999999888766 555555544433
No 264
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.98 E-value=0.00053 Score=59.20 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=27.2
Q ss_pred ceeeecCCCChHHHHHHHHHHhc---CCceEEEe
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l---~~~~i~v~ 234 (376)
.+.|.|++||||||+++.++..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88887765
No 265
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.98 E-value=0.00042 Score=61.53 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=25.9
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEE
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRV 233 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v 233 (376)
.++|.|+|||||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998766443
No 266
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.98 E-value=0.00034 Score=66.62 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=29.5
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEec
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~ 235 (376)
+.++|.||+|||||++++.+|..++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468999999999999999999999988887754
No 267
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.97 E-value=0.00085 Score=58.76 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=27.4
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
.+.|.|++||||||+++.++. ++.++ ++...+...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~--i~~d~~~~~ 37 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYV--LDADKLIHS 37 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEE--EEHHHHHHG
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEE--EEccHHHHH
Confidence 478999999999999999999 77555 445555443
No 268
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.96 E-value=0.005 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.0
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
+.+++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999998877764
No 269
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.94 E-value=0.0031 Score=61.55 Aligned_cols=44 Identities=30% Similarity=0.265 Sum_probs=32.7
Q ss_pred CCC--eEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 260 KKA--CIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 260 ~~p--sIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
..| .||+|||.++- -+......+.++|..+. .+..||++|+.++
T Consensus 312 ~~~~~~~LlLDEpt~~----------LD~~~~~~l~~~L~~l~-----~~~~vi~itH~~~ 357 (415)
T 4aby_A 312 LGADTPSVVFDEVDAG----------IGGAAAIAVAEQLSRLA-----DTRQVLVVTHLAQ 357 (415)
T ss_dssp HCCSSSEEEESSTTTT----------CCHHHHHHHHHHHHHHT-----TTSEEEEECSCHH
T ss_pred hCCCCCEEEEECCCCC----------CCHHHHHHHHHHHHHHh-----CCCEEEEEeCcHH
Confidence 456 79999997653 57888899999988773 2456788888643
No 270
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.92 E-value=0.00023 Score=62.67 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=24.9
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~ 229 (376)
.+..|+|.|++||||||+++.++..++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999987544
No 271
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.92 E-value=0.0016 Score=64.85 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
|+.++.-++|.|+||+|||+++..+|... +.+.+.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 68888889999999999999999988754 556666653
No 272
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.91 E-value=0.00053 Score=61.44 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=27.2
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
.++|.|+|||||||+++.++..++.++ ++..+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~ 35 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIF 35 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE--EchHHHH
Confidence 378999999999999999999998654 4444443
No 273
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.88 E-value=0.00028 Score=62.19 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=24.4
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
..+..|+|.|++||||||+++.++..++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999999764
No 274
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.88 E-value=0.00073 Score=58.55 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=25.8
Q ss_pred eeeecCCCChHHHHHHHHHHhc---CCceEEEe
Q 017161 205 VLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l---~~~~i~v~ 234 (376)
+.|.|++||||||+++.++..+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 88877654
No 275
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.87 E-value=0.00064 Score=61.79 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=28.7
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
+..+.|.||+||||||+++.+|..++..+ ++...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~--~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY--LDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCCcH
Confidence 45789999999999999999999998665 444444
No 276
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.86 E-value=0.0033 Score=66.97 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCCceeeecCCCChHHHHHHHHHHh
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
++..++|.||.|+||||++|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456889999999999999999863
No 277
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.85 E-value=0.00066 Score=59.78 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=25.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
.+.++..++|.||||+||||+++.++..+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345677899999999999999999999874
No 278
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.84 E-value=0.0019 Score=66.71 Aligned_cols=51 Identities=22% Similarity=0.232 Sum_probs=37.6
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+..|....|.+|++|| +.++-+...+..+.++|..+.. .+..||++|++.+
T Consensus 239 IAraL~~~P~lLlLDE----------PTs~LD~~~~~~l~~~L~~l~~----~g~tvIivsHdl~ 289 (607)
T 3bk7_A 239 IAAALLRKAHFYFFDE----------PSSYLDIRQRLKVARVIRRLAN----EGKAVLVVEHDLA 289 (607)
T ss_dssp HHHHHHSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHH
T ss_pred HHHHHhcCCCEEEEEC----------CcccCCHHHHHHHHHHHHHHHh----cCCEEEEEecChH
Confidence 4445557889999999 4556688888888888887741 2566888888654
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.83 E-value=0.00065 Score=58.70 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
.++-+.|.||+|+|||||++.++....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998753
No 280
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.83 E-value=0.00056 Score=59.82 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=24.1
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++..+.|.||+|+||||+++.++..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456678999999999999999999876
No 281
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.81 E-value=0.0014 Score=57.76 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=40.8
Q ss_pred CCceeeecCCCChHH-HHHHHHHHhc--CCceEEEech-------hhhHhhhch-----hhHHHHHHHHHHHcCCCeEEE
Q 017161 202 PKGVLCYGPPGTGKT-LLARAVANRT--DACFIRVIGS-------ELVQKYVGE-----GARMVRELFQMARSKKACIVF 266 (376)
Q Consensus 202 ~~~vLL~GppGtGKT-~LakalA~~l--~~~~i~v~~~-------el~~~~~g~-----~~~~~~~lf~~a~~~~psIl~ 266 (376)
.+-.++|||.|+||| .|++++.+.. +...+.+... ++.+. .|. ......+++...+ ...+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~-~g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHH-HHHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhc-cCCcccceecCCHHHHHHhcc--CCCEEE
Confidence 345789999999999 8899888743 5566655532 11111 110 0011122333333 246999
Q ss_pred EcCCccc
Q 017161 267 FDEVDAI 273 (376)
Q Consensus 267 iDEiD~l 273 (376)
|||+..+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999987
No 282
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.81 E-value=0.0065 Score=52.83 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=16.0
Q ss_pred CCceeeecCCCChHHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLAR 220 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~Lak 220 (376)
.+.+++.+|+|+|||..+-
T Consensus 38 ~~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4679999999999998643
No 283
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.80 E-value=0.00072 Score=59.14 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=26.0
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
.+.|.|++||||||+++.+|..++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 58899999999999999999999977754
No 284
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.80 E-value=0.00058 Score=59.84 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=24.5
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDAC 229 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~ 229 (376)
+..++|.|+|||||||+++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468899999999999999999988763
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.80 E-value=0.00068 Score=59.22 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.6
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.++..+.|.||+|+|||||++.++...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 455678899999999999999999875
No 286
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.79 E-value=0.0017 Score=66.95 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=25.9
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 365 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 345677789999999999999999999864
No 287
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.78 E-value=0.0021 Score=63.38 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=50.7
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhcCC---ceEEEech-hhh-
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDA---CFIRVIGS-ELV- 239 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l~~---~~i~v~~~-el~- 239 (376)
.++++++-.......++.++. .+...++|.||+|+||||++++++..+.. .++.+.-+ ++.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~--------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK--------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT--------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCHHHcCCCHHHHHHHHHHHH--------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 456666544444444444421 23345889999999999999999997642 23322211 110
Q ss_pred ----Hhhhch-hhHHHHHHHHHHHcCCCeEEEEcCC
Q 017161 240 ----QKYVGE-GARMVRELFQMARSKKACIVFFDEV 270 (376)
Q Consensus 240 ----~~~~g~-~~~~~~~lf~~a~~~~psIl~iDEi 270 (376)
+..+.. ..-.....+..+....|.++++.|+
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 000111 1112233444455567889999884
No 288
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.77 E-value=0.02 Score=50.38 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=34.4
Q ss_pred CCcccccCcHHHHHHHHHHhh-cccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHh
Q 017161 165 VTYNDVGGCKEQIEKMREVVE-LPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~-~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
.+|++++-.+...+.+.+.-- .|..++...-.. +...+.+++.+|+|+|||..+-..+-.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ-AILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 468888766666677665321 121121111110 112467999999999999876655543
No 289
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.75 E-value=0.0025 Score=69.07 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=35.2
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+..|....|.||++|| +.++-+......+.++|.. . +..||++|++.+
T Consensus 559 LArAL~~~P~lLLLDE----------PTs~LD~~~~~~l~~~L~~-~------g~tvIivSHdl~ 606 (986)
T 2iw3_A 559 LARAVLRNADILLLDE----------PTNHLDTVNVAWLVNYLNT-C------GITSITISHDSV 606 (986)
T ss_dssp HHHHHHTTCSEEEEES----------TTTTCCHHHHHHHHHHHHH-S------CSEEEEECSCHH
T ss_pred HHHHHhcCCCEEEEEC----------CccCCCHHHHHHHHHHHHh-C------CCEEEEEECCHH
Confidence 3344457789999999 4556688888888888876 1 456788888654
No 290
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.74 E-value=0.0032 Score=60.33 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=30.4
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEe
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~ 234 (376)
|+.+..-++|.|+||+|||+|+..+|... +.++..++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 68888889999999999999999998753 55555554
No 291
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.73 E-value=0.00079 Score=58.62 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=28.8
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
+..+.|.|++||||||+++.++.. +.++ ++...+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~--id~d~~~~~ 44 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPV--LDLDALAAR 44 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCE--EEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEE--EcccHHHHH
Confidence 446889999999999999999998 6655 455555433
No 292
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.73 E-value=0.00097 Score=61.00 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=28.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
+...+.|.||+||||||+++.+|..++..++ +...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i 61 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAI 61 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCce
Confidence 3456889999999999999999999987654 44444
No 293
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.71 E-value=0.00058 Score=65.36 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=30.5
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
++.++|.||+|||||+|+..||..++..++..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 346899999999999999999999998887766543
No 294
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.71 E-value=0.0065 Score=60.26 Aligned_cols=97 Identities=26% Similarity=0.324 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCH---HHHHHHHHHHHHhcC-----CCCCCCeEEEEEe----
Q 017161 247 ARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDN---EVQRTMLEIVNQLDG-----FDARGNIKVLMAT---- 314 (376)
Q Consensus 247 ~~~~~~lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~ll~~ld~-----~~~~~~v~VI~tT---- 314 (376)
....++....|..+ .|+++||||+++.... +.+++. .+|+.|+++++--.. --...++++|+|.
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~ 313 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 313 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccccc
Confidence 34445556665322 3999999999976532 122332 366777777653110 0135678999987
Q ss_pred CCCCCCCccccCCCCcceEEEecCCCHHHHHHHHH
Q 017161 315 NRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFK 349 (376)
Q Consensus 315 n~~~~ld~allr~gRfd~~i~~~~Pd~~~r~~Il~ 349 (376)
+.+..+.|.|+. ||...+.|+.++.++..+|+.
T Consensus 314 ~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 314 ARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp CCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred CChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 234445688988 999999999999999999993
No 295
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.71 E-value=0.0051 Score=63.59 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=36.7
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+..|....|.+|++|| +.++-|...+..+.+++..+. ...+..||++|+..+
T Consensus 482 iAraL~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 482 IAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLM---EKNEKTALVVEHDVL 533 (607)
T ss_dssp HHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHH---HHTTCEEEEECSCHH
T ss_pred HHHHHHhCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 3344557788999999 556678888999998888762 112456778888643
No 296
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.70 E-value=0.0014 Score=56.57 Aligned_cols=39 Identities=26% Similarity=0.202 Sum_probs=29.4
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el 238 (376)
.++..++|.|++|+||||+++.++..+ +..+..++...+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 345568899999999999999999976 344555655444
No 297
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.68 E-value=0.0084 Score=60.20 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=23.8
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+..+..+.|.||+|+|||||++.||..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3455668899999999999999999865
No 298
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.68 E-value=0.0011 Score=58.57 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=23.7
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456688999999999999999998764
No 299
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.67 E-value=0.0008 Score=63.65 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=29.1
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEec
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~ 235 (376)
++-++|.||+|+|||+|+..+|..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4568899999999999999999999877766654
No 300
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.67 E-value=0.014 Score=51.48 Aligned_cols=54 Identities=19% Similarity=0.105 Sum_probs=31.2
Q ss_pred CCCcccccCcHHHHHHHHHHhh-cccCchhhhHhcCCCCCCceeeecCCCChHHHH
Q 017161 164 DVTYNDVGGCKEQIEKMREVVE-LPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLL 218 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~-~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~L 218 (376)
..+|++++-.+...+.+.+.-- .|..++...-. .+...+.+++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~-~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIM-PIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHH-HHHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHH-HHhcCCCEEEECCCCCcHHHH
Confidence 3568888766666666655421 11111111111 012346799999999999987
No 301
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.66 E-value=0.00053 Score=69.46 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=45.6
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcC--CceEEEechh-hhHh---h--------hchhhHHHHHHHHHHHcCCCeEEE
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGSE-LVQK---Y--------VGEGARMVRELFQMARSKKACIVF 266 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~--~~~i~v~~~e-l~~~---~--------~g~~~~~~~~lf~~a~~~~psIl~ 266 (376)
.+.+++|.||+|+||||++++++..+. ...+.+.... +... + ++.....+..+...+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 456799999999999999999998763 3344444322 2100 0 011112344555566667899999
Q ss_pred EcCCc
Q 017161 267 FDEVD 271 (376)
Q Consensus 267 iDEiD 271 (376)
+.|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99973
No 302
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.66 E-value=0.0031 Score=55.34 Aligned_cols=36 Identities=17% Similarity=0.011 Sum_probs=27.6
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
..+..+.|.|++|+||||+++.++..+ +..++....
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 344568899999999999999999875 555555543
No 303
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.65 E-value=0.0011 Score=58.78 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=27.2
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
+..+.|.|++||||||+++.++. ++.++ ++...+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~--id~D~~~ 38 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINV--IDADIIA 38 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEE--EEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEE--EEccHHH
Confidence 34688999999999999999998 77654 4544443
No 304
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.64 E-value=0.00094 Score=58.73 Aligned_cols=26 Identities=31% Similarity=0.591 Sum_probs=22.2
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+++.+.|.||+|+|||||++.++...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999999865
No 305
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.63 E-value=0.0076 Score=65.87 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=54.0
Q ss_pred CCceeeecCCCChHHHHHHHHHH-----hcCCce--------------EEEechhhh----HhhhchhhHHHHHHHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLARAVAN-----RTDACF--------------IRVIGSELV----QKYVGEGARMVRELFQMAR 258 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~-----~l~~~~--------------i~v~~~el~----~~~~g~~~~~~~~lf~~a~ 258 (376)
+..++|.||.|+||||++|.++- +.+..+ .++...+.. +.+.++.. +-....+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~---~~a~al~l 865 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELS---ETASILMH 865 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHH---HHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHH---HHHHHHHh
Confidence 46789999999999999999942 123111 111111111 11111111 11222334
Q ss_pred cCCCeEEEEcCCcccccCCCCCCCCCCHHH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 259 SKKACIVFFDEVDAIGGARFDDGVGGDNEV-QRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 259 ~~~psIl~iDEiD~l~~~r~~~~~~~~~~~-~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
...|++|+|||..+- .+... ...+..++..+. ...+..+|++|+..
T Consensus 866 a~~~sLlLLDEp~~G----------td~~dg~~~~~~il~~L~---~~~g~~vl~~TH~~ 912 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRG----------TATFDGTAIANAVVKELA---ETIKCRTLFSTHYH 912 (1022)
T ss_dssp CCTTCEEEEECTTTT----------SCHHHHHHHHHHHHHHHH---HTSCCEEEEECCCH
T ss_pred CCCCcEEEEECCCCC----------CChHHHHHHHHHHHHHHH---hcCCCEEEEEeCCH
Confidence 578899999997432 24333 344556666553 12356788888864
No 306
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.63 E-value=0.0039 Score=54.75 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc---CCceEEEechh--------hhHhhhchh-----hHHHHHHHHHHHcCCCeEE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE--------LVQKYVGEG-----ARMVRELFQMARSKKACIV 265 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~e--------l~~~~~g~~-----~~~~~~lf~~a~~~~psIl 265 (376)
.+-.+++||.|+|||+.+-.++..+ +...+.+...- +.+ ..|.. .....+++..+. ....+|
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~~~~i~~~~~-~~~dvV 85 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKNSREILKYFE-EDTEVI 85 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEEC-TTSCEEECEEESSSTHHHHHCC-TTCSEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCCHHHHHHHHh-ccCCEE
Confidence 3457889999999999888888765 44444443110 111 11100 000124454443 235799
Q ss_pred EEcCCccc
Q 017161 266 FFDEVDAI 273 (376)
Q Consensus 266 ~iDEiD~l 273 (376)
+|||+..+
T Consensus 86 iIDEaqfl 93 (191)
T 1xx6_A 86 AIDEVQFF 93 (191)
T ss_dssp EECSGGGS
T ss_pred EEECCCCC
Confidence 99999886
No 307
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.63 E-value=0.00081 Score=59.16 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=24.5
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc-CCce
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT-DACF 230 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l-~~~~ 230 (376)
++.-+.|.|++|+||||+++.++..+ +..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 34458899999999999999999987 4433
No 308
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.61 E-value=0.0041 Score=69.74 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=26.2
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+++...+.|.||+|+|||||++++++.+
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345777889999999999999999999865
No 309
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.61 E-value=0.0011 Score=59.25 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=23.9
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||++.++...
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35566779999999999999999999976
No 310
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.61 E-value=0.0011 Score=58.68 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcC----CceEEEechhh
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSEL 238 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~----~~~i~v~~~el 238 (376)
.++..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4556788999999999999999998764 45777765443
No 311
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0058 Score=63.14 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=37.3
Q ss_pred HHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 253 lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
.+..|....|.||++|| +.++-|...+..+.+++..+. ...+..||++|+..+
T Consensus 477 ~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~ll~~l~---~~~g~tviivtHdl~ 529 (608)
T 3j16_B 477 AIVLALGIPADIYLIDE----------PSAYLDSEQRIICSKVIRRFI---LHNKKTAFIVEHDFI 529 (608)
T ss_dssp HHHHHTTSCCSEEEECC----------TTTTCCHHHHHHHHHHHHHHH---HHHTCEEEEECSCHH
T ss_pred HHHHHHHhCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 44455567899999999 566678888888888887652 112455788888653
No 312
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.60 E-value=0.0015 Score=59.53 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=30.6
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCce--------EEEechhhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACF--------IRVIGSELV 239 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~--------i~v~~~el~ 239 (376)
+..|.|.|++||||||+++.++..++.++ ..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 44688999999999999999999988763 356666654
No 313
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.59 E-value=0.0063 Score=61.98 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=37.2
Q ss_pred HHHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 253 LFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 253 lf~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
.+..+....|.+|++|| +.++-|...+..+.+++..+. ...+..||++|+..+
T Consensus 411 ~lAraL~~~p~lLlLDE----------Pt~~LD~~~~~~i~~~l~~l~---~~~g~tvi~vsHd~~ 463 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLM---EKNEKTALVVEHDVL 463 (538)
T ss_dssp HHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHH---HHHTCEEEEECSCHH
T ss_pred HHHHHHHhCCCEEEEeC----------CcccCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHH
Confidence 34445567788999999 566678889999998887752 112345777888643
No 314
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.59 E-value=0.0011 Score=56.41 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=26.0
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+++...+.|.||.|+|||||+++++..+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 355666678999999999999999999986
No 315
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.57 E-value=0.0016 Score=57.62 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=28.5
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
+..+.|.|++|||||++++.++..++.+++ +...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~--~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYV--DTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCcee--cCChH
Confidence 346899999999999999999999987664 44444
No 316
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.57 E-value=0.0015 Score=58.96 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=30.0
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhh
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 239 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~ 239 (376)
..+..+.|.|++||||||+++.+|..++.++ ++...+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~--~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTY--LDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCce--ecCCCee
Confidence 3455688999999999999999999998765 4444443
No 317
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.56 E-value=0.0097 Score=55.83 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=27.1
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc----CCceEEEec
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIG 235 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~ 235 (376)
++..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45678899999999999999999754 445555544
No 318
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.55 E-value=0.0014 Score=56.61 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
.++|.||+|+||||+++.++...+. .+.++..++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244555444
No 319
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.52 E-value=0.0064 Score=68.19 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=36.3
Q ss_pred HHHHHcCCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 017161 254 FQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTL 320 (376)
Q Consensus 254 f~~a~~~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~l 320 (376)
+..|....|.||++||. .++-|......+.+.+.... .+..||+.|++.+.+
T Consensus 1182 iARal~~~p~iLiLDEp----------Ts~lD~~~~~~i~~~l~~~~-----~~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1182 IARALVRQPHILLLDEA----------TSALDTESEKVVQEALDKAR-----EGRTCIVIAHRLSTI 1233 (1284)
T ss_dssp HHHHHHHCCSSEEEESC----------SSSCCHHHHHHHHHHHHHHS-----SSSCEEEECSCTTGG
T ss_pred HHHHHHcCCCEEEEeCC----------cccCCHHHHHHHHHHHHHhC-----CCCEEEEEecCHHHH
Confidence 33444467889999994 44568888888888887653 234577888877654
No 320
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.51 E-value=0.0018 Score=57.14 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=24.1
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
.++..+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455688999999999999999999874
No 321
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.51 E-value=0.0011 Score=62.76 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=28.1
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEech
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS 236 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~ 236 (376)
+-++|.||+|+|||+|+..+|..++..++..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999988766655543
No 322
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.50 E-value=0.0014 Score=56.85 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.5
Q ss_pred CceeeecCCCChHHHHHHHHHHhc
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.|.||+|+|||||++.++..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999865
No 323
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.48 E-value=0.0022 Score=56.18 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.5
Q ss_pred CceeeecCCCChHHHHHHHHHHhc
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++|.||+|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998765
No 324
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.47 E-value=0.01 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.3
Q ss_pred CCceeeecCCCChHHHHHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLARAVA 223 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA 223 (376)
.+.+++.||+|||||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 5679999999999998766554
No 325
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.47 E-value=0.013 Score=60.97 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=32.0
Q ss_pred cCcHHHHHHHHHHhhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 171 GGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 171 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
.-.++|++.+..++.. ..-.||+||||||||+++-.+...+ +...+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp TCCHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 3466777777776642 1247999999999997655554432 445444443
No 326
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.46 E-value=0.0022 Score=63.11 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=28.2
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEEEechhh
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 238 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el 238 (376)
.+.-++|.|+||+||||+|+.++..++..+ ++...+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 355688999999999999999999887554 444433
No 327
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.45 E-value=0.0048 Score=64.44 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=32.8
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|.+|++|| +.++-+......+.+++..+. ..+..||++|+..+
T Consensus 565 p~llllDE----------Pt~~LD~~~~~~i~~~l~~l~----~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 565 RTLYILDE----------PTTGLHVDDIARLLDVLHRLV----DNGDTVLVIEHNLD 607 (670)
T ss_dssp CEEEEEES----------TTTTCCHHHHHHHHHHHHHHH----HTTCEEEEECCCHH
T ss_pred CcEEEEeC----------CCCCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCHH
Confidence 56999999 555678888999999988774 12566888888654
No 328
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.42 E-value=0.0012 Score=58.00 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=23.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
++..+.|.||+|+|||||++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999876
No 329
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.42 E-value=0.0017 Score=61.41 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=28.0
Q ss_pred hcCCCCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 196 KLGIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 196 ~~g~~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
++.+++...+.|.||+|+|||||++.+++.+.
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 34677888899999999999999999999873
No 330
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.42 E-value=0.0017 Score=57.36 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.0
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
+.++..+.|.||+|+|||||+++++..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45566788999999999999999999763
No 331
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.41 E-value=0.019 Score=49.85 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=16.0
Q ss_pred CCceeeecCCCChHHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLAR 220 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~Lak 220 (376)
.+.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 4689999999999997544
No 332
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.40 E-value=0.0025 Score=56.30 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=24.6
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
...++.+.|.||+|+|||||+++++....
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34556788999999999999999998764
No 333
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.38 E-value=0.0014 Score=61.05 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=23.2
Q ss_pred CceeeecCCCChHHHHHHHHHHhc-CCce
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT-DACF 230 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l-~~~~ 230 (376)
..++|.|+||+||||+++.++..+ +..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~ 31 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEE
Confidence 458999999999999999999864 4433
No 334
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.38 E-value=0.0051 Score=64.29 Aligned_cols=51 Identities=8% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHcCCCe--EEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 254 FQMARSKKAC--IVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 254 f~~a~~~~ps--Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
+..|....|. +|++|| +.++-++..+..+.+++..+. ..+..||++|+..+
T Consensus 213 iArAL~~~p~~~lLlLDE----------PtsgLD~~~~~~l~~~l~~l~----~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 213 LATQIGSRLTGVLYVLDE----------PSIGLHQRDNDRLIATLKSMR----DLGNTLIVVEHDED 265 (670)
T ss_dssp HHHHHHTCCCSCEEEEEC----------TTTTCCGGGHHHHHHHHHHHH----HTTCEEEEECCCHH
T ss_pred HHHHHhhCCCCCEEEEEC----------CccCCCHHHHHHHHHHHHHHH----HcCCEEEEEeCCHH
Confidence 3344445666 999999 555668888888888888774 12456888888653
No 335
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.36 E-value=0.018 Score=54.20 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=33.8
Q ss_pred CCcccccCcHHHHHHHHHHhhc-ccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHHh
Q 017161 165 VTYNDVGGCKEQIEKMREVVEL-PMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~-~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
.+|++++-.+...+.|++.--. |..++...-..-+...+.+++.+|+|+|||+.+-..+-.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 3577776666666666553211 111111111111122368999999999999986655443
No 336
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.34 E-value=0.0016 Score=62.41 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=27.6
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEec
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 235 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~ 235 (376)
.-++|.||+|+|||++|+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 358899999999999999999999866655443
No 337
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.31 E-value=0.0055 Score=58.23 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=28.4
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
..++..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3556679999999999999999999865 455555543
No 338
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.31 E-value=0.0084 Score=57.16 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.7
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.++..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456678899999999999999999865
No 339
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0022 Score=60.46 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++..+.|.||+|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556678899999999999999999865
No 340
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.26 E-value=0.002 Score=58.49 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=25.1
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCCc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~~ 229 (376)
+.++.-+.|.||+|+||||+++.++..++..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3444558899999999999999999987643
No 341
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.26 E-value=0.0022 Score=59.70 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=27.7
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhH
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQ 240 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~ 240 (376)
+..|.|.|++||||||+++.++ .++.++ +++..+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~~ 110 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLGH 110 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHHH
Confidence 3458899999999999999999 577654 55555543
No 342
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.014 Score=61.22 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=33.3
Q ss_pred CCcccccCcHHHHHHHHHH-hhcccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHH
Q 017161 165 VTYNDVGGCKEQIEKMREV-VELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAV 222 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~-i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~Lakal 222 (376)
.+|++++-.+...+.+.+. +..+..++...-...+.....+++.||+|+|||+.+-..
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHH
Confidence 4677776444444444432 112222222222223455789999999999999988443
No 343
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.23 E-value=0.0017 Score=63.51 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=27.6
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
++-++|.||+|+|||+|+..+|..++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 345789999999999999999999887665544
No 344
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.23 E-value=0.0024 Score=57.28 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=24.0
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
.++++.-+.|.||+|+|||||+++++....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345667788999999999999999998754
No 345
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.18 E-value=0.016 Score=51.65 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=31.8
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcC---CCCCCceeeecCCCChHHHHHH
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLAR 220 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppGtGKT~Lak 220 (376)
..+|++++-.....+.+.+.- +..+.-++... +...+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 346888876666666665432 11221111110 1234679999999999998543
No 346
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.17 E-value=0.0014 Score=58.83 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=18.5
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHH-Hhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVA-NRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA-~~l 226 (376)
.+.++.-+.|.||+|+||||+++.++ ..+
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34556678899999999999999999 764
No 347
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.16 E-value=0.01 Score=60.22 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=30.2
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcC---CceEEEechhhhHh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSELVQK 241 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~---~~~i~v~~~el~~~ 241 (376)
+.-|+|.|.||+||||+++.+|..++ .....++..++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 44688999999999999999999874 44455666555433
No 348
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.15 E-value=0.0031 Score=55.72 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=26.4
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceE
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFI 231 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i 231 (376)
.|.|.|++|||||++++.+|..+|.+|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 5889999999999999999999999986
No 349
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.15 E-value=0.03 Score=54.50 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=63.9
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhc-----CCceEEEechh-------hhHhh--------hchh-hHH--------
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRT-----DACFIRVIGSE-------LVQKY--------VGEG-ARM-------- 249 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l-----~~~~i~v~~~e-------l~~~~--------~g~~-~~~-------- 249 (376)
+.....++|.||+|||||+|++.+++.. +..++.+-+.+ +.... ..++ ...
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~al 250 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVI 250 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4556779999999999999999999854 33333332221 11110 0011 111
Q ss_pred -HHHHHHHHHcCCCeEEEEcCCcccccC-------CCC-CCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 017161 250 -VRELFQMARSKKACIVFFDEVDAIGGA-------RFD-DGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRP 317 (376)
Q Consensus 250 -~~~lf~~a~~~~psIl~iDEiD~l~~~-------r~~-~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~ 317 (376)
+.+-|. ..+...+|++|++.+++.. .+. ++.+-+..+...+..++.....+...+.+..|.|.--+
T Consensus 251 t~AEyfr--d~G~dVLil~DslTR~A~A~revs~~~Ge~ps~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv~ 325 (422)
T 3ice_A 251 EKAKRLV--EHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 325 (422)
T ss_dssp HHHHHHH--HTSCEEEEEEECHHHHHHHHHHHSCCSSCBCSSSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECCS
T ss_pred HHHHHHH--hcCCCEEEEEeCchHHHHHHHHHHHhcCCCCCCCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEec
Confidence 111222 2466779999999876431 111 22344556666666666543333345667777665543
No 350
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0028 Score=61.25 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++..+.|.||+|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4556678999999999999999999865
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.14 E-value=0.0024 Score=56.55 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=25.3
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
+++++|.||+|+|||+||..++.... .++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 46799999999999999999998865 4443
No 352
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.14 E-value=0.024 Score=50.41 Aligned_cols=56 Identities=18% Similarity=0.118 Sum_probs=30.8
Q ss_pred CCCCcccccCcHHHHHHHHHHhhc-ccCchhhhHhcCCCCCCceeeecCCCChHHHHH
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVEL-PMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLA 219 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~-~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~La 219 (376)
+..+|++++-.....+.+.+.--. |..++...-.. +...+.+++.+|+|+|||..+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPL-GRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCcHHHHH
Confidence 345688886666666666543211 11111111111 123468999999999999863
No 353
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.14 E-value=0.013 Score=62.13 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.0
Q ss_pred CCceeeecCCCChHHHHHHHHHHh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~ 225 (376)
...++|.||+|+||||++|.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456889999999999999999863
No 354
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.09 E-value=0.013 Score=63.49 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=24.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||++.++..+
T Consensus 695 ~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 695 QCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45566779999999999999999999753
No 355
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.04 E-value=0.011 Score=55.55 Aligned_cols=70 Identities=21% Similarity=0.132 Sum_probs=44.6
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh-------hHhhh-------------chhhHHHHHHHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL-------VQKYV-------------GEGARMVRELFQMAR 258 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el-------~~~~~-------------g~~~~~~~~lf~~a~ 258 (376)
+..+++.|++|+||||++..+|..+ +.....+++.-. +..+. ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5568889999999999999999765 555555554311 00000 012233455666666
Q ss_pred cCCCeEEEEcCCc
Q 017161 259 SKKACIVFFDEVD 271 (376)
Q Consensus 259 ~~~psIl~iDEiD 271 (376)
.....+++||=.-
T Consensus 178 ~~~~D~ViIDTpg 190 (297)
T 1j8m_F 178 SEKMEIIIVDTAG 190 (297)
T ss_dssp HTTCSEEEEECCC
T ss_pred hCCCCEEEEeCCC
Confidence 5667899999743
No 356
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.04 E-value=0.037 Score=51.70 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=43.5
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechh----h---hHhh--------h-----chhhHHHHHHHHHH
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSE----L---VQKY--------V-----GEGARMVRELFQMA 257 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~e----l---~~~~--------~-----g~~~~~~~~lf~~a 257 (376)
++..+.+.|++|+||||++..+|..+ +..+..+++.- . ...+ + .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45567888999999999999999864 44444444321 0 0000 0 01122335566666
Q ss_pred HcCCCeEEEEcCC
Q 017161 258 RSKKACIVFFDEV 270 (376)
Q Consensus 258 ~~~~psIl~iDEi 270 (376)
....+.+|+||+-
T Consensus 177 ~~~~~D~viiDtp 189 (295)
T 1ls1_A 177 RLEARDLILVDTA 189 (295)
T ss_dssp HHHTCCEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 5456789999995
No 357
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.97 E-value=0.0086 Score=60.41 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=26.6
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
.+..|+|.|+||+||||++..+|..+ +.....+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45678999999999999999999765 555555554
No 358
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.91 E-value=0.021 Score=59.96 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=18.4
Q ss_pred CCCCCceeeecCCCChHHHHHH
Q 017161 199 IDPPKGVLCYGPPGTGKTLLAR 220 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~Lak 220 (376)
+...+++++.||+|+|||+.+-
T Consensus 36 ~~~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 36 ILEGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GGGTCEEEEECCGGGCHHHHHH
T ss_pred hcCCCcEEEEcCCccHHHHHHH
Confidence 3446889999999999998873
No 359
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.91 E-value=0.042 Score=52.63 Aligned_cols=60 Identities=20% Similarity=0.109 Sum_probs=32.8
Q ss_pred CCCCcccccCcHHHHHHHHHHhhc-ccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHH
Q 017161 163 PDVTYNDVGGCKEQIEKMREVVEL-PMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223 (376)
Q Consensus 163 ~~~~~~di~G~~~~~~~l~~~i~~-~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA 223 (376)
+..+|++++-.....+.|.+.--. |..++...-.. +...+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPV-AITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH-HHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCEEEECCCCcHHHHHHHHHH
Confidence 345788887666666666653211 11111111010 1123679999999999998654443
No 360
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.90 E-value=0.0016 Score=57.13 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.6
Q ss_pred ceeeecCCCChHHHHHHHHHHhcC
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~ 227 (376)
-+.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 361
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.87 E-value=0.0024 Score=59.82 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=23.9
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
..+.-+.|.||+|||||||++.++..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455688999999999999999998775
No 362
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.86 E-value=0.011 Score=58.59 Aligned_cols=70 Identities=23% Similarity=0.262 Sum_probs=45.4
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc----CCceEEEechhhhH----------hhhc----------hhhHHHHHHHHH
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT----DACFIRVIGSELVQ----------KYVG----------EGARMVRELFQM 256 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~~el~~----------~~~g----------~~~~~~~~lf~~ 256 (376)
+++.+++.|++|+||||++-.+|..+ |.....+++..... ...+ .....++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 46678899999999999999998754 56666666542110 0000 112334566666
Q ss_pred HHcCCCeEEEEcCC
Q 017161 257 ARSKKACIVFFDEV 270 (376)
Q Consensus 257 a~~~~psIl~iDEi 270 (376)
+......+++||=.
T Consensus 179 ~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 179 AKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEECC
Confidence 66556679999874
No 363
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.86 E-value=0.024 Score=55.85 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=43.2
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh-------hHhh---h-------c---hhhHHHHHHHHHH
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL-------VQKY---V-------G---EGARMVRELFQMA 257 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el-------~~~~---~-------g---~~~~~~~~lf~~a 257 (376)
++..+.+.|++|+||||++..+|..+ +..+..+++.-. +..+ . + ......+..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999865 444544443211 0010 0 0 1123335566666
Q ss_pred HcCCCeEEEEcCC
Q 017161 258 RSKKACIVFFDEV 270 (376)
Q Consensus 258 ~~~~psIl~iDEi 270 (376)
+.....+++||=.
T Consensus 177 ~~~~~DvVIIDTa 189 (425)
T 2ffh_A 177 RLEARDLILVDTA 189 (425)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEcCC
Confidence 5556679999854
No 364
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.86 E-value=0.0043 Score=55.91 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
.+.-+.|.||+|+||||+++.++..++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 445688999999999999999999886
No 365
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.85 E-value=0.013 Score=57.92 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=27.3
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEec
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIG 235 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~ 235 (376)
.+..+++.|++|+||||++..+|..+ +.....+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35679999999999999999999865 344555544
No 366
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.81 E-value=0.018 Score=51.48 Aligned_cols=31 Identities=19% Similarity=-0.014 Sum_probs=22.8
Q ss_pred ceeeecCCCChHHHHHHHHHHhc---CCceEEEe
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT---DACFIRVI 234 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l---~~~~i~v~ 234 (376)
-.+++||.|+|||+.+-.++..+ +...+.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35589999999999888887754 55555443
No 367
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.80 E-value=0.0056 Score=55.36 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=28.8
Q ss_pred ceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQK 241 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~ 241 (376)
.+-|.||||+||||+++.++..++.+++ +..+++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR~ 45 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLRA 45 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHHH
Confidence 4678999999999999999999987764 44455443
No 368
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.79 E-value=0.019 Score=50.82 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=16.5
Q ss_pred CCCceeeecCCCChHHHHHH
Q 017161 201 PPKGVLCYGPPGTGKTLLAR 220 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~Lak 220 (376)
..+.+++.+|+|+|||..+-
T Consensus 56 ~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHH
Confidence 34689999999999998543
No 369
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.75 E-value=0.0056 Score=63.33 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=32.1
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc---CCceEEEechhh
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGSEL 238 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~el 238 (376)
.+..|+|.|.||+||||++++++..+ +.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34568999999999999999999998 889988875443
No 370
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.75 E-value=0.034 Score=50.20 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=35.7
Q ss_pred CceeeecCCCChHHHHHHHHHHhc---CCceEEEech-------hhhHhhhchh-----hHHHHHHHHHHHcCCCeEEEE
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT---DACFIRVIGS-------ELVQKYVGEG-----ARMVRELFQMARSKKACIVFF 267 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l---~~~~i~v~~~-------el~~~~~g~~-----~~~~~~lf~~a~~~~psIl~i 267 (376)
.-.+++||.|+|||+.+-..+... +...+.+... .+.+.. |.. -....+++..+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 446788999999997666665533 3344433311 111110 100 00012244444 34579999
Q ss_pred cCCccc
Q 017161 268 DEVDAI 273 (376)
Q Consensus 268 DEiD~l 273 (376)
||+..+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999887
No 371
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.73 E-value=0.0056 Score=53.59 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.0
Q ss_pred ceeeecCCCChHHHHHHHHHHhc
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999865
No 372
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.71 E-value=0.016 Score=55.25 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.5
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.....+.|.||||+|||||+++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3455568899999999999999999754
No 373
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.69 E-value=0.17 Score=48.03 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=31.5
Q ss_pred CcccccCcHHHHHHHHHHhhc-ccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHHH
Q 017161 166 TYNDVGGCKEQIEKMREVVEL-PMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVAN 224 (376)
Q Consensus 166 ~~~di~G~~~~~~~l~~~i~~-~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA~ 224 (376)
+|+++.-.....+.|.+.--. |..++...-.. +...+.+++.+|+|+|||..+-..+-
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ-AILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHH-HTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 566665555555665543111 11111111111 12346799999999999987644443
No 374
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.68 E-value=0.13 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=18.8
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
+.+++.+|+|+|||..+-..+-.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 57999999999999886666543
No 375
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.68 E-value=0.017 Score=57.66 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.6
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l 226 (376)
...++|+||+|+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 4568999999999999999988754
No 376
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.68 E-value=0.0038 Score=57.71 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=33.9
Q ss_pred CCCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 017161 260 KKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDT 319 (376)
Q Consensus 260 ~~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ 319 (376)
..|.+|++|| +.++-|......+.+++..+. ..+..||++|+..+.
T Consensus 181 ~~p~lLlLDE----------Pts~LD~~~~~~l~~~l~~l~----~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 181 LEPELCILDE----------SDSGLDIDALKVVADGVNSLR----DGKRSFIIVTHYQRI 226 (267)
T ss_dssp HCCSEEEEES----------TTTTCCHHHHHHHHHHHHTTC----CSSCEEEEECSSGGG
T ss_pred hCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH----hcCCEEEEEeeCHHH
Confidence 3577999999 455668888999999887763 225668888887543
No 377
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.65 E-value=0.08 Score=50.21 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=32.6
Q ss_pred CCcccccCcHHHHHHHHHHhh-cccCchh-hhHhcCCCCCCceeeecCCCChHHHHHHHHH
Q 017161 165 VTYNDVGGCKEQIEKMREVVE-LPMLHPE-KFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~-~~l~~~~-~~~~~g~~~~~~vLL~GppGtGKT~LakalA 223 (376)
.+|++++-.....+.+.+.-- .|..++. .+..+--..++.+++.+|+|+|||..+-..+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHH
Confidence 367777666666666655311 1111111 1111111234789999999999998655433
No 378
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.65 E-value=0.0028 Score=57.67 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||+++++...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45666779999999999999999999853
No 379
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.62 E-value=0.0054 Score=58.03 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=23.8
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.++..+.|.||+|+|||||++.++..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3455568899999999999999999976
No 380
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.58 E-value=0.066 Score=47.83 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=15.6
Q ss_pred CCceeeecCCCChHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLA 219 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~La 219 (376)
.+.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 467999999999999864
No 381
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.58 E-value=0.024 Score=51.37 Aligned_cols=24 Identities=17% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCceeeecCCCChHHHHHHHHHHh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~ 225 (376)
...|+|.|.||+|||+|+.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 346999999999999999999863
No 382
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.55 E-value=0.0074 Score=52.49 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=27.6
Q ss_pred eeeecCCCChHHHHHHHHHHhcCCceEEEechh
Q 017161 205 VLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 237 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l~~~~i~v~~~e 237 (376)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 77777777644
No 383
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.54 E-value=0.007 Score=54.43 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=26.6
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEE
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIR 232 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~ 232 (376)
..|.|.|++|||||++++.+|..++.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357889999999999999999999988743
No 384
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.49 E-value=0.014 Score=57.88 Aligned_cols=25 Identities=40% Similarity=0.373 Sum_probs=20.6
Q ss_pred CCCceeeecCCCChHHHHHHHHHHh
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
..+-.++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3445789999999999999888753
No 385
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.48 E-value=0.0058 Score=57.15 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=24.7
Q ss_pred CceeeecCCCChHHHHHHHHHHhcC---CceEEEechhh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSEL 238 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~---~~~i~v~~~el 238 (376)
.-|.|.||+|+||||+++.++..++ ..+..+++..+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4588999999999999999999765 33455555444
No 386
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.47 E-value=0.0072 Score=56.96 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.7
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
++..+.|.||+||||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35678899999999999999999865
No 387
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.46 E-value=0.016 Score=59.14 Aligned_cols=41 Identities=32% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcC----CceEEEechhhhH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSELVQ 240 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~----~~~i~v~~~el~~ 240 (376)
..+..+.|.|++|||||||++++|..++ ..+..+++..+..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 4456688999999999999999999874 2344577666543
No 388
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.42 E-value=0.0085 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=22.4
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
....+.|.|++|+|||||++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999999864
No 389
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.42 E-value=0.0083 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.6
Q ss_pred ceeeecCCCChHHHHHHHHHHhcC
Q 017161 204 GVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l~ 227 (376)
-.+|+||+|+|||+++++++..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999998764
No 390
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.39 E-value=0.025 Score=58.02 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=31.2
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcC----CceEEEechhhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTD----ACFIRVIGSELV 239 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~----~~~i~v~~~el~ 239 (376)
+..|+|.|++|+||||+|++++..++ .+++.++...+.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 34688999999999999999999875 677888765543
No 391
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.37 E-value=0.058 Score=51.75 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=30.5
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhHhcC---CCCCCceeeecCCCChHHHHHHH
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLARA 221 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppGtGKT~Laka 221 (376)
.+|+++.-.....+.+.+.- +..+..++... +...+.+++.+|+|+|||+.+-.
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 45666665566666665421 11111111111 12346799999999999987443
No 392
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.35 E-value=0.06 Score=51.21 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=31.0
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcC---CCCCCceeeecCCCChHHHHHH
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLLAR 220 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppGtGKT~Lak 220 (376)
..+|++++-.+...+.+...- +..+..++... +...+.+++.+|+|+|||..+-
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 456888766666666665532 11111111111 1123679999999999998743
No 393
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.34 E-value=0.016 Score=51.58 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=29.5
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEechhhhHhhh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYV 243 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~el~~~~~ 243 (376)
..|-|+|..||||||+++.++. +|.++ +++..+....+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~v--idaD~ia~~l~ 47 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASL--VDTDLIAHRIT 47 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEE--EEHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcE--EECcHHHHHHh
Confidence 3588999999999999999998 77766 55555554443
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.28 E-value=0.0048 Score=59.55 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=47.2
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhcC--CceEEEech-hhhH----h---hhc-------h-hhHHHHHHHHHHHc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTD--ACFIRVIGS-ELVQ----K---YVG-------E-GARMVRELFQMARS 259 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l~--~~~i~v~~~-el~~----~---~~g-------~-~~~~~~~lf~~a~~ 259 (376)
.+++...++|.||+|+|||||+++++.... .-.+.+... ++.. . ++. . ....++..+..+..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~ 250 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR 250 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHh
Confidence 445677899999999999999999999763 223444321 1100 0 110 0 11234566677777
Q ss_pred CCCeEEEEcCCc
Q 017161 260 KKACIVFFDEVD 271 (376)
Q Consensus 260 ~~psIl~iDEiD 271 (376)
..|..++++|+.
T Consensus 251 ~~pd~~l~~e~r 262 (361)
T 2gza_A 251 MKPTRILLAELR 262 (361)
T ss_dssp SCCSEEEESCCC
T ss_pred cCCCEEEEcCch
Confidence 788999999964
No 395
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.25 E-value=0.016 Score=54.54 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=23.7
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
..+..+.|.||+|+|||||++.++..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444688999999999999999999765
No 396
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.24 E-value=0.093 Score=50.41 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCcccccCcHHHHHHHHHHhhc-ccCchhhhHhcCCCCCCceeeecCCCChHHHHHHHHH
Q 017161 165 VTYNDVGGCKEQIEKMREVVEL-PMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVA 223 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~-~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~LakalA 223 (376)
.+|++++-.+..++.|.+.--. |..++...-.. +...+.+++.+|+|+|||..+-..+
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~-i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQ-IIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCCchHHHHHHH
Confidence 4688876666666666543211 11121111110 1234679999999999997655433
No 397
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.22 E-value=0.01 Score=53.09 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=16.0
Q ss_pred ceeeecCCCChHHH-HHHHHHH
Q 017161 204 GVLCYGPPGTGKTL-LARAVAN 224 (376)
Q Consensus 204 ~vLL~GppGtGKT~-LakalA~ 224 (376)
-.+++||-|+|||+ |++.+-+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r 51 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRR 51 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999 5555533
No 398
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.22 E-value=0.0072 Score=53.71 Aligned_cols=25 Identities=44% Similarity=0.537 Sum_probs=21.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHh
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
++..+.|.||+|+|||||+++++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999974
No 399
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.22 E-value=0.042 Score=54.72 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=27.3
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcC---CceEEEechh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSE 237 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~---~~~i~v~~~e 237 (376)
+..|+|.|.||+||||+++.++..++ .+...++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 45689999999999999999999864 3344444333
No 400
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.20 E-value=0.0093 Score=56.66 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=22.7
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
|.-+.|.||+||||||+++.++..+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34578999999999999999998875
No 401
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.19 E-value=0.037 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.9
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l 226 (376)
...+.|.|+||+||||++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4468899999999999999998765
No 402
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.19 E-value=0.075 Score=51.10 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=29.3
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhHhcC---CCCCCceeeecCCCChHHHH
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG---IDPPKGVLCYGPPGTGKTLL 218 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppGtGKT~L 218 (376)
..+|++++-.+...+.|...- +..|..++... +...+.+++.+|+|+|||+.
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTR---YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 68 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHH
Confidence 346888755555555554321 11111111111 12356899999999999974
No 403
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.19 E-value=0.077 Score=50.77 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=32.0
Q ss_pred CCcccccCcHHHHHHHHHHhh-cccCchh-hhHhcCCCCCCceeeecCCCChHHHHH
Q 017161 165 VTYNDVGGCKEQIEKMREVVE-LPMLHPE-KFVKLGIDPPKGVLCYGPPGTGKTLLA 219 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~-~~l~~~~-~~~~~g~~~~~~vLL~GppGtGKT~La 219 (376)
.+|++++-.....+.+.+.-- .|..++. .+..+--..++.+++.+|+|+|||..+
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 467777766667777665321 1111111 111111113578999999999999875
No 404
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.18 E-value=0.016 Score=48.07 Aligned_cols=21 Identities=48% Similarity=0.751 Sum_probs=19.1
Q ss_pred ceeeecCCCChHHHHHHHHHH
Q 017161 204 GVLCYGPPGTGKTLLARAVAN 224 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~ 224 (376)
.++|.|++|+|||+|++++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999965
No 405
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.17 E-value=0.04 Score=50.24 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.6
Q ss_pred CceeeecCCCChHHHHHH
Q 017161 203 KGVLCYGPPGTGKTLLAR 220 (376)
Q Consensus 203 ~~vLL~GppGtGKT~Lak 220 (376)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 679999999999998644
No 406
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.16 E-value=0.016 Score=60.67 Aligned_cols=22 Identities=41% Similarity=0.421 Sum_probs=18.4
Q ss_pred CCCCceeeecCCCChHHHHHHH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARA 221 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~Laka 221 (376)
...+++++.||+|+|||+.+-.
T Consensus 38 ~~~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 38 FSGKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp TTCSCEEEECSSHHHHHHHHHH
T ss_pred hCCCcEEEEcCCccHHHHHHHH
Confidence 3467899999999999998743
No 407
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.022 Score=48.69 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.....+++.|++|+|||+|+.+++...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344579999999999999999998753
No 408
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.13 E-value=0.0057 Score=57.29 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=25.0
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.++..+.|.||+|+|||||+++++...
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45666779999999999999999999864
No 409
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.11 E-value=0.0092 Score=57.46 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.3
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCCc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDAC 229 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~~ 229 (376)
...+.|.||+|+|||||++.+++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999987543
No 410
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.10 E-value=0.077 Score=52.15 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.7
Q ss_pred CCceeeecCCCChHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLA 219 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~La 219 (376)
.+.+++.||+|+|||..+
T Consensus 2 g~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CCEEEEECCTTSCTTTTH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 357999999999999975
No 411
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.08 E-value=0.043 Score=54.21 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=29.9
Q ss_pred CceeeecCCCChHHHHHHHHHHhcCCceEEEech-hhhH
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTDACFIRVIGS-ELVQ 240 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~~~~i~v~~~-el~~ 240 (376)
..++|.+|+|+|||..+-.++...+...+.+... .+..
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHH
Confidence 3599999999999999988888877777666655 4443
No 412
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.03 E-value=0.012 Score=52.92 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
+..+.|.|++|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999999984
No 413
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.95 E-value=0.0058 Score=55.92 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcC
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
.+.-|.|.|++|+||||+++.|+..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445688999999999999999999984
No 414
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.94 E-value=0.014 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=21.4
Q ss_pred CceeeecCCCChHHHHHHHHHHhc
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l 226 (376)
..+.|.|++|+||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 458899999999999999999865
No 415
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.93 E-value=0.031 Score=57.65 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=20.3
Q ss_pred eeeecCCCChHHHHHHHHHHhc
Q 017161 205 VLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l 226 (376)
+.|.||+|+|||||++++++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8899999999999999999853
No 416
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.91 E-value=0.017 Score=58.41 Aligned_cols=27 Identities=7% Similarity=-0.075 Sum_probs=24.2
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDA 228 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~ 228 (376)
+..++|.|.+||||||++++||..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 346889999999999999999999874
No 417
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.87 E-value=0.011 Score=51.18 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.0
Q ss_pred CCceeeecCCCChHHHHHHHHHHh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~ 225 (376)
..++||.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 568999999999999999999885
No 418
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.85 E-value=0.06 Score=50.22 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=31.5
Q ss_pred CCCcccccCcHHHHHHHHHHhhcccCchhhhH-----hcCCCCCCceeeecCCCChHHHHH
Q 017161 164 DVTYNDVGGCKEQIEKMREVVELPMLHPEKFV-----KLGIDPPKGVLCYGPPGTGKTLLA 219 (376)
Q Consensus 164 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~-----~~g~~~~~~vLL~GppGtGKT~La 219 (376)
..+|++++-....++.|...- +..|..++ .+--.+++.+++++|+|||||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 346777766666666665421 22222111 111123578999999999999764
No 419
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.012 Score=58.73 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.6
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+.+...+.|.||+|||||||+|.+++..
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 345677789999999999999999999854
No 420
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.79 E-value=0.0093 Score=51.33 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.9
Q ss_pred CceeeecCCCChHHHHHHHHHHhcC
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
+.+.|.|++|+|||||++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999998763
No 421
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.77 E-value=0.023 Score=58.77 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=18.6
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.||||||||+++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999988777654
No 422
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.76 E-value=0.014 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.3
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+.|.|++|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999985
No 423
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.71 E-value=0.014 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.7
Q ss_pred ceeeecCCCChHHHHHHHHHHhc
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 424
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.70 E-value=0.03 Score=50.02 Aligned_cols=30 Identities=23% Similarity=0.163 Sum_probs=25.7
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCce
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~ 230 (376)
.+.-+.|.|++|+||||+++.++..++...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 355688999999999999999999987643
No 425
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.67 E-value=0.013 Score=54.14 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.6
Q ss_pred ceeeecCCCChHHHHHHHHHHhc
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.|.||+|+|||||++++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 426
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.65 E-value=0.2 Score=48.46 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=26.3
Q ss_pred ceeeecCCCChHHHHHHHHHHhc----CCceEEEech-hhh
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT----DACFIRVIGS-ELV 239 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l----~~~~i~v~~~-el~ 239 (376)
++++.+|+|+|||..+-+++... +...+.+... .+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~ 65 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLV 65 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 79999999999999888876654 5555555543 443
No 427
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.60 E-value=0.054 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.8
Q ss_pred CCceeeecCCCChHHHHHHHHHHh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~ 225 (376)
+..|.|.|.||+|||||+.++...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 345889999999999999999874
No 428
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.55 E-value=0.017 Score=50.67 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.1
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l 226 (376)
...++|.|++|+|||+|+..++..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999875
No 429
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.54 E-value=0.14 Score=50.62 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=29.9
Q ss_pred CCcccccCcHHHHHHHHHHhhcccCchhhhH-----hcCCCCCCceeeecCCCChHHHHH
Q 017161 165 VTYNDVGGCKEQIEKMREVVELPMLHPEKFV-----KLGIDPPKGVLCYGPPGTGKTLLA 219 (376)
Q Consensus 165 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~-----~~g~~~~~~vLL~GppGtGKT~La 219 (376)
.+|++++-.....+.|.+.- +..|..++ .+--..++.+++.||+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 35666765666666655421 12221111 111123578999999999999874
No 430
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.54 E-value=0.028 Score=55.67 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=26.2
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCCc
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDAC 229 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~~ 229 (376)
+.....+.|.||+|||||||++.+++.....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4556678999999999999999999987543
No 431
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.51 E-value=0.017 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=19.6
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.-|.|.|++|+||||+++.++..+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568888999999999999999876
No 432
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.48 E-value=0.022 Score=49.84 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
....++|.|++|+|||+|+.+++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999854
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.47 E-value=0.018 Score=51.33 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTD 227 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~ 227 (376)
+.-+.|.|++|+||||+++.++..+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44578899999999999999998763
No 434
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.38 E-value=0.21 Score=43.38 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.|+|.|++|+|||+|++++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 435
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.11 Score=57.24 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=18.7
Q ss_pred CCceeeecCCCChHHHHHHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLARAVAN 224 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~ 224 (376)
.+.+|+.||+|+|||+.+-..+.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHH
Confidence 46799999999999987655444
No 436
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.37 E-value=0.071 Score=50.77 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.....+.|.|+||+||||++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445568899999999999999998754
No 437
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.37 E-value=0.022 Score=46.85 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|++.+++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 438
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.35 E-value=0.084 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=20.5
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.+++.+|+|+|||..+-.++..+
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHHH
Confidence 3568999999999999987777643
No 439
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.31 E-value=0.37 Score=47.97 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=18.7
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
+.+++.+|+|+|||..+-..+-.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 56999999999999887665543
No 440
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.29 E-value=0.054 Score=58.44 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=37.8
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEe
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF 336 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~ 336 (376)
|.++++|| +.++-|......+.++|..+. .. +..||+.+++.+ +.. ..|+++.+
T Consensus 827 p~LLILDE----------PTsGLD~~~~~~L~~lL~~L~---~~-G~TVIvI~HdL~-----~i~--~ADrIivL 880 (916)
T 3pih_A 827 RTLYILDE----------PTVGLHFEDVRKLVEVLHRLV---DR-GNTVIVIEHNLD-----VIK--NADHIIDL 880 (916)
T ss_dssp SEEEEEES----------TTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECCCHH-----HHT--TCSEEEEE
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHH-----HHH--hCCEEEEe
Confidence 57999999 566778988999999888763 12 345777787653 233 45666666
No 441
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.29 E-value=0.028 Score=53.95 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCCCCceeeecCCCChHHHHHHHHHHhcCCce
Q 017161 199 IDPPKGVLCYGPPGTGKTLLARAVANRTDACF 230 (376)
Q Consensus 199 ~~~~~~vLL~GppGtGKT~LakalA~~l~~~~ 230 (376)
+.....+.|.||+|+|||||++.+++......
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 34566799999999999999999999875443
No 442
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.25 E-value=0.022 Score=47.58 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.7
Q ss_pred CceeeecCCCChHHHHHHHHHHhc
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l 226 (376)
.-.+|+||.|+|||+++.|++-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998654
No 443
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.24 E-value=0.023 Score=46.94 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.6
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
-.+++.|++|+|||+|++++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 444
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.23 E-value=0.023 Score=51.48 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhc
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.-+.|.|++|+||||+++.++..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999876
No 445
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.21 E-value=0.037 Score=57.13 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.3
Q ss_pred CceeeecCCCChHHHHHHHHHHhc
Q 017161 203 KGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 569999999999999988876543
No 446
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.18 E-value=0.04 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l 226 (376)
...++|.|.+|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568888999999999999999875
No 447
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.23 Score=42.12 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.8
Q ss_pred ceeeecCCCChHHHHHHHHHHhc
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l 226 (376)
.|+|.|++|+|||+|++.+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998753
No 448
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.15 E-value=0.021 Score=56.35 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=23.0
Q ss_pred CCCCCCc--eeeecCCCChHHHHHHHHHHh
Q 017161 198 GIDPPKG--VLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 198 g~~~~~~--vLL~GppGtGKT~LakalA~~ 225 (376)
.++++.. +.|.||+|+|||||++++++.
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4455555 889999999999999999975
No 449
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.15 E-value=0.017 Score=49.29 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.5
Q ss_pred ceeeecCCCChHHHHHHHHHH
Q 017161 204 GVLCYGPPGTGKTLLARAVAN 224 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~ 224 (376)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999987
No 450
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=94.15 E-value=0.33 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=18.7
Q ss_pred CceeeecCCCChHHHHHHHHHH
Q 017161 203 KGVLCYGPPGTGKTLLARAVAN 224 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~ 224 (376)
+++++.+|+|+|||+.+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 5799999999999997776654
No 451
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.15 E-value=0.02 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.0
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+.|.|++|+|||+|++++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999873
No 452
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.14 E-value=0.026 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 453
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.12 E-value=0.0089 Score=52.01 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=23.7
Q ss_pred cCCCCCCceeeecCCCChHHHHHHHHHHh
Q 017161 197 LGIDPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 197 ~g~~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
+.+.+...+.|.|++|+|||+|++++++.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44555567999999999999999998754
No 454
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.11 E-value=0.024 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.1
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|+++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 455
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.09 E-value=0.022 Score=49.12 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=21.3
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHh
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
.....|+|.|++|+|||+|+.++...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 33457999999999999999999864
No 456
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=94.09 E-value=0.41 Score=49.78 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=22.6
Q ss_pred CCCceeeecCCCChHHHHHHHHHHhcCCceEEEe
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANRTDACFIRVI 234 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~l~~~~i~v~ 234 (376)
..+.+++.||+|+|||+.+-..+-+-+...+.+.
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~ 264 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLN 264 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEE
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEc
Confidence 4457999999999999765544444443444444
No 457
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.05 E-value=0.03 Score=46.88 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.4
Q ss_pred CCCceeeecCCCChHHHHHHHHHH
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVAN 224 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~ 224 (376)
....|++.|++|+|||+|++++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 455799999999999999999986
No 458
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.02 E-value=0.12 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.8
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
..|+|.|++|+|||+|+.++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46999999999999999999874
No 459
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.01 E-value=0.042 Score=58.58 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=18.6
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.++|.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999988777654
No 460
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.00 E-value=0.028 Score=46.27 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
..+++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 461
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.00 E-value=0.028 Score=46.46 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=20.0
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 462
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.98 E-value=0.11 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=16.9
Q ss_pred CCceeeecCCCChHHHHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLARAV 222 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~Lakal 222 (376)
.+.+++.+|+|+|||+.+-..
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 468999999999999954443
No 463
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.96 E-value=0.029 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.3
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|++++.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 464
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.94 E-value=0.094 Score=53.34 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=29.2
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcC---CceEEEechhh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTD---ACFIRVIGSEL 238 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~---~~~i~v~~~el 238 (376)
+..++|.|++|+||||+++.++..++ .++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 45688999999999999999998763 45666665544
No 465
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.94 E-value=0.012 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=20.1
Q ss_pred eeeecCCCChHHHHHHHHHHhc
Q 017161 205 VLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 205 vLL~GppGtGKT~LakalA~~l 226 (376)
+.|.||+|||||||+++++..+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5688999999999999999876
No 466
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.90 E-value=0.03 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCCceeeecCCCChHHHHHHHHHHh
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
....+++.|++|+|||+|+.++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999763
No 467
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.89 E-value=0.03 Score=46.82 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|++++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 468
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.89 E-value=0.017 Score=51.61 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCCceeeecCCCChHHHHHHHHHHh
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
.++..+.|.|+.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 33445789999999999999999987
No 469
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.87 E-value=0.03 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.6
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
-.+++.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 470
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.85 E-value=0.029 Score=46.72 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.3
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
-.++|.|++|+|||+|++++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999999863
No 471
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.84 E-value=0.2 Score=44.87 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.3
Q ss_pred CceeeecCCCChHHHHHH
Q 017161 203 KGVLCYGPPGTGKTLLAR 220 (376)
Q Consensus 203 ~~vLL~GppGtGKT~Lak 220 (376)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998543
No 472
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=93.84 E-value=0.19 Score=54.48 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=31.8
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPD 318 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~ 318 (376)
|.+++||| +.++.+......+.++|..+. .. +..||++|+..+
T Consensus 885 p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~---~~-G~TVIvisHdl~ 927 (993)
T 2ygr_A 885 RTVYILDE----------PTTGLHFDDIRKLLNVINGLV---DK-GNTVIVIEHNLD 927 (993)
T ss_dssp SEEEEEES----------TTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECCCHH
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHH
Confidence 58999999 566778888899999888764 12 345677777543
No 473
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.83 E-value=0.027 Score=47.77 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
..+.|.|++|+|||+|++++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 474
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.83 E-value=0.031 Score=46.78 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
..+++.|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 475
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.80 E-value=0.029 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 476
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.78 E-value=0.029 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.9
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 477
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.77 E-value=0.031 Score=50.18 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCceeeecCCCChHHHHHHHHHHhcCC
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRTDA 228 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l~~ 228 (376)
+.-+.|.|++|+||||+++.++..++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455778899999999999999987644
No 478
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.76 E-value=0.035 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCCceeeecCCCChHHHHHHHHHHh
Q 017161 201 PPKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~LakalA~~ 225 (376)
....+++.|++|+|||+|+.++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 479
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=93.76 E-value=0.33 Score=48.54 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.4
Q ss_pred CCceeeecCCCChHHHHHH
Q 017161 202 PKGVLCYGPPGTGKTLLAR 220 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~Lak 220 (376)
++.+++.+|+|+|||..+-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 4789999999999998743
No 480
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.74 E-value=0.044 Score=51.67 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=20.6
Q ss_pred ceeeecCCCChHHHHHHHHHHhc
Q 017161 204 GVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~l 226 (376)
-++|.|+.|+|||||++.++...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999753
No 481
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.74 E-value=0.06 Score=52.07 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=52.9
Q ss_pred CCeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCc--------cccCCCCcce
Q 017161 261 KACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDP--------ALLRPGRLDR 332 (376)
Q Consensus 261 ~psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~--------allr~gRfd~ 332 (376)
.|.++++||++.+.... .+.....+..++.+.. .-++.++++|..+..+.. +++. .++.
T Consensus 262 ~~~~i~iDEa~~~~~~~-------~~~~~~~l~~~~~~~R----k~g~~~~~~tQ~~~d~~~~~~~~~~~~il~--n~~~ 328 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQ-------TPQAIAFLRDTSKRIR----KYNGSLIVISQNVIDFLAPEVQRYGQALLD--NPTY 328 (392)
T ss_dssp TTCEEEETTGGGGCCTT-------CTHHHHHHHHHHHHGG----GGTCEEEEEESCGGGGGSTTTHHHHHHHHH--SCSE
T ss_pred ccEEEEEecHHHHhCcC-------chHHHHHHHHHHHHhh----hhCeEEEEEcCCHHHhhChhhHHHHHHHHH--hhhh
Confidence 35577788877775421 3444555666666654 345667888888776643 4555 5677
Q ss_pred EEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCC
Q 017161 333 KVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPN 372 (376)
Q Consensus 333 ~i~~~~Pd~~~r~~Il~~~~~~~~~~~~vdl~~lA~~t~g 372 (376)
.|.++.++ .++..+.+ . +++. +...+.|.....|
T Consensus 329 ~i~l~~~~-~~~~~~~~-~---~~ls-~~e~~~l~~~~~G 362 (392)
T 4ag6_A 329 KLLLAQGE-KDLEAITT-L---MNLS-EAEHDLLVNAKRG 362 (392)
T ss_dssp EEECSCCH-HHHHHHHH-H---TTCC-HHHHHHHHTCCTT
T ss_pred hheeCCCh-hhHHHHHH-H---hCCC-HHHHHhccCCCCc
Confidence 88888764 34443332 2 2343 2344555554443
No 482
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.71 E-value=0.034 Score=45.94 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=20.0
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 483
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.71 E-value=0.034 Score=45.86 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.1
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|++++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 484
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.69 E-value=0.1 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCceeeecCCCChHHHHHHHHHHh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~ 225 (376)
...|+|.|.+|+|||+|+.++...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999874
No 485
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.67 E-value=0.43 Score=48.01 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.5
Q ss_pred CCCceeeecCCCChHHHH
Q 017161 201 PPKGVLCYGPPGTGKTLL 218 (376)
Q Consensus 201 ~~~~vLL~GppGtGKT~L 218 (376)
..+.+++.+|+|+|||..
T Consensus 110 ~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 356899999999999985
No 486
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.65 E-value=0.033 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.4
Q ss_pred CCceeeecCCCChHHHHHHHHHHh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~ 225 (376)
...|+|.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999874
No 487
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.62 E-value=0.035 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
-.+++.|++|+|||+|++++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 488
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.60 E-value=0.036 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.7
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 489
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.60 E-value=0.035 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.7
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
-.|+|.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 490
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.56 E-value=0.035 Score=46.03 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.0
Q ss_pred ceeeecCCCChHHHHHHHHHH
Q 017161 204 GVLCYGPPGTGKTLLARAVAN 224 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~ 224 (376)
.+++.|++|+|||+|++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999974
No 491
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.55 E-value=0.038 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.0
Q ss_pred CCceeeecCCCChHHHHHHHHHHhc
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~l 226 (376)
+.-|.|.|++|+||||+++.++..+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999999876
No 492
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.54 E-value=0.027 Score=47.61 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.7
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
..+.|.|++|+|||+|+++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
No 493
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.54 E-value=0.032 Score=55.93 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.1
Q ss_pred CCCCCCceeeecCCCChHHHHHHHHHHhc
Q 017161 198 GIDPPKGVLCYGPPGTGKTLLARAVANRT 226 (376)
Q Consensus 198 g~~~~~~vLL~GppGtGKT~LakalA~~l 226 (376)
.+.+ ..+.|.||+|+|||||+++++...
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 4556 678899999999999999999854
No 494
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.49 E-value=0.038 Score=47.50 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.4
Q ss_pred CCCCceeeecCCCChHHHHHHHHHH
Q 017161 200 DPPKGVLCYGPPGTGKTLLARAVAN 224 (376)
Q Consensus 200 ~~~~~vLL~GppGtGKT~LakalA~ 224 (376)
.....|++.|++|+|||+|+..+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999964
No 495
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.46 E-value=0.039 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.8
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
..+++.|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 496
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.46 E-value=0.039 Score=46.55 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.2
Q ss_pred ceeeecCCCChHHHHHHHHHHh
Q 017161 204 GVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 204 ~vLL~GppGtGKT~LakalA~~ 225 (376)
.+++.|++|+|||+|+.++.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 497
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.46 E-value=0.036 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.4
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
-.+++.|++|+|||+|+.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 498
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.41 E-value=0.038 Score=46.24 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.8
Q ss_pred CceeeecCCCChHHHHHHHHHHh
Q 017161 203 KGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 203 ~~vLL~GppGtGKT~LakalA~~ 225 (376)
..+++.|++|+|||+|++++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
No 499
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.41 E-value=0.04 Score=46.86 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=21.3
Q ss_pred CCceeeecCCCChHHHHHHHHHHh
Q 017161 202 PKGVLCYGPPGTGKTLLARAVANR 225 (376)
Q Consensus 202 ~~~vLL~GppGtGKT~LakalA~~ 225 (376)
.-.|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999875
No 500
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.41 E-value=0.09 Score=56.16 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=37.5
Q ss_pred CeEEEEcCCcccccCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCccccCCCCcceEEEe
Q 017161 262 ACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEF 336 (376)
Q Consensus 262 psIl~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~VI~tTn~~~~ld~allr~gRfd~~i~~ 336 (376)
|.|++||| +.++.+......+.+++..+. .. +..||++|+..+.+ . ..|+++.+
T Consensus 752 p~lLILDE----------PTsGLD~~~~~~l~~lL~~L~---~~-G~tVIvisHdl~~i-----~--~aDrii~L 805 (842)
T 2vf7_A 752 GTVYVLDE----------PTTGLHPADVERLQRQLVKLV---DA-GNTVIAVEHKMQVV-----A--ASDWVLDI 805 (842)
T ss_dssp CEEEEEEC----------TTTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECCCHHHH-----T--TCSEEEEE
T ss_pred CCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHHH-----H--hCCEEEEE
Confidence 68999999 566778888899999888764 12 34577777754322 2 45566665
Done!