Query 017162
Match_columns 376
No_of_seqs 127 out of 1123
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 8.8E-51 1.9E-55 378.2 23.5 349 3-365 84-449 (449)
2 PTZ00206 amino acid transporte 100.0 4.2E-51 9.2E-56 397.3 19.0 356 2-366 96-465 (467)
3 KOG1303 Amino acid transporter 100.0 2.2E-48 4.9E-53 368.3 28.0 357 2-368 74-437 (437)
4 PF01490 Aa_trans: Transmembra 100.0 7.6E-49 1.7E-53 378.8 -1.6 355 2-362 39-408 (409)
5 PLN03074 auxin influx permease 100.0 5E-44 1.1E-48 346.3 21.8 353 2-376 82-462 (473)
6 KOG4303 Vesicular inhibitory a 100.0 1.1E-43 2.4E-48 312.5 4.4 356 2-373 152-522 (524)
7 KOG1305 Amino acid transporter 100.0 4.8E-39 1E-43 303.4 22.5 353 2-368 42-408 (411)
8 COG0814 SdaC Amino acid permea 99.9 4.6E-26 1E-30 218.0 23.9 350 2-361 45-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.8 8.4E-19 1.8E-23 166.9 22.8 334 2-354 39-391 (394)
10 PRK10483 tryptophan permease; 99.8 2.3E-18 4.9E-23 162.7 23.0 333 2-356 47-401 (414)
11 TIGR00837 araaP aromatic amino 99.8 1.9E-18 4.1E-23 165.4 21.1 314 2-334 33-360 (381)
12 PRK09664 tryptophan permease T 99.8 7E-18 1.5E-22 159.2 24.0 338 2-357 45-403 (415)
13 PRK15132 tyrosine transporter 99.8 5.8E-18 1.3E-22 160.5 20.2 334 2-358 39-392 (403)
14 PRK13629 threonine/serine tran 99.6 2.5E-14 5.4E-19 135.4 20.1 354 2-360 55-441 (443)
15 TIGR00814 stp serine transport 99.5 1.4E-12 3E-17 124.3 16.2 319 4-330 41-376 (397)
16 PRK11021 putative transporter; 98.8 8.4E-06 1.8E-10 78.9 26.2 193 4-215 39-231 (410)
17 PRK10655 potE putrescine trans 98.7 6.2E-06 1.3E-10 80.6 24.6 56 155-215 188-243 (438)
18 TIGR00909 2A0306 amino acid tr 98.7 2.1E-06 4.6E-11 83.5 21.2 310 5-333 44-376 (429)
19 PRK10746 putative transport pr 98.7 5.2E-06 1.1E-10 81.5 23.0 313 5-334 51-389 (461)
20 PRK10644 arginine:agmatin anti 98.7 8.7E-06 1.9E-10 79.6 23.6 57 154-215 189-245 (445)
21 COG1113 AnsP Gamma-aminobutyra 98.6 5.1E-06 1.1E-10 78.5 18.6 311 4-332 53-388 (462)
22 TIGR00905 2A0302 transporter, 98.6 1.1E-05 2.4E-10 79.6 22.1 197 6-215 50-252 (473)
23 PRK11357 frlA putative fructos 98.6 3.5E-06 7.6E-11 82.5 18.4 55 155-214 194-248 (445)
24 PRK10435 cadB lysine/cadaverin 98.6 1.6E-05 3.5E-10 77.5 21.9 60 153-217 184-243 (435)
25 TIGR00908 2A0305 ethanolamine 98.6 2E-05 4.3E-10 77.1 22.4 188 11-214 54-244 (442)
26 TIGR03810 arg_ornith_anti argi 98.5 2.4E-05 5.3E-10 77.0 22.7 314 5-334 43-381 (468)
27 PF13520 AA_permease_2: Amino 98.5 6.8E-06 1.5E-10 79.9 17.7 304 13-335 47-377 (426)
28 PRK10197 gamma-aminobutyrate t 98.4 3.3E-05 7.2E-10 75.6 20.9 310 4-332 32-367 (446)
29 TIGR00906 2A0303 cationic amin 98.4 3.1E-05 6.6E-10 77.8 20.8 316 4-333 69-411 (557)
30 PRK10238 aromatic amino acid t 98.4 6.8E-05 1.5E-09 73.6 22.9 310 4-333 52-386 (456)
31 PRK10249 phenylalanine transpo 98.4 6E-05 1.3E-09 74.0 22.4 194 4-213 61-261 (458)
32 TIGR01773 GABAperm gamma-amino 98.4 6.7E-05 1.5E-09 73.6 22.4 195 4-214 52-254 (452)
33 PRK11049 D-alanine/D-serine/gl 98.4 7.1E-05 1.5E-09 73.7 22.3 57 154-215 209-265 (469)
34 TIGR00913 2A0310 amino acid pe 98.4 0.00015 3.2E-09 71.7 24.2 195 5-214 44-250 (478)
35 KOG1287 Amino acid transporter 98.4 7.4E-05 1.6E-09 71.8 20.5 319 4-338 54-391 (479)
36 TIGR00907 2A0304 amino acid pe 98.4 0.00038 8.3E-09 68.9 26.5 199 4-209 54-265 (482)
37 PRK11387 S-methylmethionine tr 98.4 5.3E-05 1.2E-09 74.7 20.2 55 155-214 205-259 (471)
38 TIGR00911 2A0308 L-type amino 98.4 3.9E-05 8.5E-10 76.2 19.3 57 154-215 233-289 (501)
39 TIGR00930 2a30 K-Cl cotranspor 98.3 0.0001 2.2E-09 78.0 22.9 203 3-214 117-333 (953)
40 TIGR00912 2A0309 spore germina 98.3 1.5E-05 3.2E-10 75.8 14.9 298 3-331 40-352 (359)
41 PRK10580 proY putative proline 98.3 0.00018 3.9E-09 70.7 21.6 194 4-213 49-251 (457)
42 COG0531 PotE Amino acid transp 98.2 0.00015 3.3E-09 71.2 20.3 311 8-333 56-389 (466)
43 PRK10836 lysine transporter; P 98.2 0.00032 7E-09 69.5 22.5 56 154-214 203-258 (489)
44 PRK15049 L-asparagine permease 98.2 0.00044 9.5E-09 68.7 23.1 172 154-333 218-406 (499)
45 TIGR00910 2A0307_GadC glutamat 98.2 0.0002 4.2E-09 71.3 19.8 51 158-213 196-246 (507)
46 TIGR03813 put_Glu_GABA_T putat 98.2 0.0004 8.7E-09 68.6 21.5 47 164-215 202-248 (474)
47 TIGR03428 ureacarb_perm permea 98.0 0.0046 9.9E-08 61.1 26.2 53 156-213 213-265 (475)
48 COG3949 Uncharacterized membra 97.9 0.00055 1.2E-08 62.1 15.7 101 3-115 42-142 (349)
49 PRK15238 inner membrane transp 97.8 0.0055 1.2E-07 60.9 21.8 54 156-214 211-264 (496)
50 PF00324 AA_permease: Amino ac 97.8 0.00042 9.2E-09 68.5 13.5 66 154-224 198-263 (478)
51 TIGR00800 ncs1 NCS1 nucleoside 97.7 0.0025 5.4E-08 62.3 18.3 189 30-225 76-275 (442)
52 PF03845 Spore_permease: Spore 97.7 0.00092 2E-08 62.4 14.0 247 4-272 39-295 (320)
53 TIGR02358 thia_cytX probable h 97.5 0.069 1.5E-06 51.2 23.3 219 29-269 57-276 (386)
54 COG0833 LysP Amino acid transp 97.3 0.19 4E-06 49.3 24.9 312 4-332 85-427 (541)
55 COG1457 CodB Purine-cytosine p 97.3 0.022 4.7E-07 54.9 17.1 260 33-322 84-351 (442)
56 KOG1289 Amino acid transporter 97.2 0.058 1.3E-06 52.7 19.8 213 4-224 90-315 (550)
57 TIGR02119 panF sodium/pantothe 96.9 0.16 3.4E-06 50.2 20.1 85 29-121 106-190 (471)
58 PRK11375 allantoin permease; P 96.8 0.37 7.9E-06 47.7 22.0 280 29-322 88-392 (484)
59 TIGR00813 sss transporter, SSS 96.8 0.11 2.4E-06 50.2 18.0 85 29-121 65-149 (407)
60 PRK09442 panF sodium/panthothe 96.8 0.59 1.3E-05 46.3 24.2 85 29-121 107-191 (483)
61 KOG1286 Amino acid transporter 96.7 0.025 5.4E-07 56.4 12.5 170 155-332 231-422 (554)
62 PRK12488 acetate permease; Pro 96.7 0.44 9.4E-06 48.0 21.2 85 29-121 129-213 (549)
63 TIGR02711 symport_actP cation/ 96.5 0.86 1.9E-05 45.9 22.0 82 29-118 129-210 (549)
64 COG0591 PutP Na+/proline sympo 96.0 1.6 3.5E-05 43.4 20.9 80 29-116 104-183 (493)
65 COG1914 MntH Mn2+ and Fe2+ tra 95.8 2 4.3E-05 41.5 22.3 57 277-333 322-378 (416)
66 PRK11017 codB cytosine permeas 95.4 1.5 3.3E-05 42.3 17.7 174 29-222 70-244 (404)
67 PRK15419 proline:sodium sympor 94.9 4.6 0.0001 40.2 19.8 83 29-120 107-192 (502)
68 COG1953 FUI1 Cytosine/uracil/t 94.7 4.7 0.0001 39.4 21.2 292 29-334 102-416 (497)
69 TIGR03648 Na_symport_lg probab 94.7 5.6 0.00012 40.2 20.5 82 29-118 94-175 (552)
70 TIGR02121 Na_Pro_sym sodium/pr 94.5 5.5 0.00012 39.5 20.7 83 29-120 103-188 (487)
71 PRK09395 actP acetate permease 94.5 6.1 0.00013 39.9 23.3 82 29-118 131-212 (551)
72 PF01566 Nramp: Natural resist 94.1 4.2 9E-05 38.5 16.8 81 31-120 43-125 (358)
73 PRK10484 putative transporter; 93.8 3.7 8E-05 41.1 16.5 22 29-51 100-121 (523)
74 COG4147 DhlC Predicted symport 93.6 7.6 0.00016 37.8 19.5 196 7-218 82-293 (529)
75 PF02133 Transp_cyt_pur: Perme 93.1 0.042 9.1E-07 53.7 1.5 49 30-79 71-119 (440)
76 PF00474 SSF: Sodium:solute sy 92.0 4.4 9.4E-05 39.1 13.8 84 29-120 68-152 (406)
77 PRK00701 manganese transport p 91.6 14 0.00031 36.1 20.2 77 31-116 95-173 (439)
78 KOG3832 Predicted amino acid t 91.4 0.4 8.7E-06 40.8 5.0 146 31-182 131-299 (319)
79 COG4145 PanF Na+/panthothenate 88.3 23 0.0005 33.5 18.0 77 29-113 105-181 (473)
80 TIGR00796 livcs branched-chain 87.2 28 0.00062 33.2 20.9 130 186-330 208-347 (378)
81 TIGR00796 livcs branched-chain 86.9 4.4 9.6E-05 38.7 9.1 78 29-115 254-331 (378)
82 PF05525 Branch_AA_trans: Bran 85.1 11 0.00023 36.7 10.7 102 6-116 233-338 (427)
83 PF02554 CstA: Carbon starvati 83.4 6.3 0.00014 37.1 8.1 82 31-121 115-196 (376)
84 PF00209 SNF: Sodium:neurotran 82.7 30 0.00064 34.7 13.4 104 101-209 192-297 (523)
85 PF05525 Branch_AA_trans: Bran 82.5 50 0.0011 32.1 15.4 118 199-330 229-353 (427)
86 COG0733 Na+-dependent transpor 80.5 59 0.0013 31.6 19.2 44 29-77 74-117 (439)
87 COG0814 SdaC Amino acid permea 72.6 96 0.0021 30.1 13.3 142 193-334 222-377 (415)
88 PRK15433 branched-chain amino 72.5 55 0.0012 31.9 11.2 154 156-330 194-356 (439)
89 COG1114 BrnQ Branched-chain am 66.3 20 0.00043 34.4 6.6 80 30-118 263-342 (431)
90 PRK15433 branched-chain amino 63.9 50 0.0011 32.2 9.1 102 5-116 236-341 (439)
91 PF05805 L6_membrane: L6 membr 49.4 70 0.0015 27.3 6.5 65 303-367 43-117 (195)
92 PF02028 BCCT: BCCT family tra 46.3 3.1E+02 0.0068 27.3 16.7 92 31-124 163-255 (485)
93 KOG1289 Amino acid transporter 44.3 3.5E+02 0.0075 27.2 11.4 49 30-79 325-373 (550)
94 TIGR01197 nramp NRAMP (natural 40.2 3.5E+02 0.0075 26.0 20.3 77 31-116 65-143 (390)
95 CHL00020 psbN photosystem II p 40.1 35 0.00075 21.2 2.4 28 196-223 3-30 (43)
96 PRK13183 psbN photosystem II r 37.9 42 0.00091 21.2 2.6 28 196-223 6-33 (46)
97 KOG2083 Na+/K+ symporter [Inor 36.9 1.1E+02 0.0025 30.8 6.7 53 157-214 224-276 (643)
98 KOG1288 Amino acid transporter 33.9 5.8E+02 0.013 26.8 14.3 55 157-216 295-349 (945)
99 KOG2082 K+/Cl- cotransporter K 33.0 1.7E+02 0.0036 30.7 7.3 93 31-125 181-286 (1075)
100 PF02468 PsbN: Photosystem II 32.7 32 0.0007 21.4 1.5 27 198-224 5-31 (43)
101 cd08763 Cyt_b561_CYB561 Verteb 31.9 1.3E+02 0.0028 24.4 5.3 43 332-375 33-75 (143)
102 PRK15015 carbon starvation pro 30.6 1.8E+02 0.0038 30.0 7.0 41 31-72 146-186 (701)
103 PRK09928 choline transport pro 27.7 7.1E+02 0.015 26.0 10.8 44 34-79 183-226 (679)
104 PF07954 DUF1689: Protein of u 27.5 1.4E+02 0.0031 24.4 4.8 60 308-367 33-93 (152)
105 TIGR00842 bcct choline/carniti 27.5 3.7E+02 0.008 26.5 8.6 50 29-79 119-172 (453)
106 PF07086 DUF1352: Protein of u 27.4 2.4E+02 0.0053 24.0 6.4 51 321-371 82-132 (186)
107 TIGR00907 2A0304 amino acid pe 27.1 6.1E+02 0.013 24.9 12.4 49 31-79 290-338 (482)
108 cd08764 Cyt_b561_CG1275_like N 25.5 2E+02 0.0042 25.1 5.6 37 338-375 56-94 (214)
109 cd08766 Cyt_b561_ACYB-1_like P 25.1 2.2E+02 0.0048 23.0 5.6 38 337-375 38-75 (144)
110 PRK09950 putative transporter; 24.6 7.2E+02 0.016 24.9 15.9 94 28-122 165-263 (506)
111 TIGR00909 2A0306 amino acid tr 24.2 4.9E+02 0.011 24.9 9.0 47 31-78 265-311 (429)
112 PHA02680 ORF090 IMV phosphoryl 23.0 54 0.0012 23.8 1.4 60 161-227 16-76 (91)
113 PRK04949 putative sulfate tran 21.5 3.1E+02 0.0067 24.6 6.4 25 187-214 22-46 (251)
114 PF07695 7TMR-DISM_7TM: 7TM di 21.5 4.7E+02 0.01 21.6 8.2 51 302-353 118-168 (205)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-51 Score=378.21 Aligned_cols=349 Identities=20% Similarity=0.242 Sum_probs=302.8
Q ss_pred hhhHHHHHHHHHHHHHhCcccC---CCcccccHHHHHHHHh----------CCCCcCeeehhhHHHHHHhhhhhHhhhch
Q 017162 3 LVISWVTTLNTMWQMINLHECV---PGVRFDRYIDLGRHAF----------GPKLGPWIVLPQQLIVQVGCDIVYMVTGG 69 (376)
Q Consensus 3 l~~~~~~~~~t~~ll~~~~~~~---~~~~~~sy~~l~~~~~----------G~~~g~~~~~~~~~~~~~g~~~~y~i~~~ 69 (376)
.++++.++.||+|++++|.+.. .+...-+|++.++.++ || ++|.+++++++++|+|.|++|+++++
T Consensus 84 ~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva 162 (449)
T KOG1304|consen 84 TVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVA 162 (449)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHH
Confidence 4678999999999999997532 1222468888887775 54 67899999999999999999999999
Q ss_pred hhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCC
Q 017162 70 KCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHT 149 (376)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 149 (376)
++++++.+... ...++.+.++.+...+.+|++++|+++.|+.+|.++.+..++..+++......+. ++ .++.
T Consensus 163 ~nl~~i~~~~~--~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~-~~-----~~~~ 234 (449)
T KOG1304|consen 163 TNLKQIVDEHS--PGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDL-PP-----TSDL 234 (449)
T ss_pred hhHHHHHhccC--CCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcc-CC-----cccc
Confidence 99999998432 2367889999999999999999999999999999999988776666554433332 21 1112
Q ss_pred CcchhHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccch-hhhhhhHHHHHHHHHhhhcceeecccCCCCchhh
Q 017162 150 SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILM-WKGALGAYFVNAICYFPVALIGYWAFGQDVDDNV 228 (376)
Q Consensus 150 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~-~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i 228 (376)
+...++.+++..+|+.+|||+++.++.|++++| |+|+++.- .+++..++.++.++|..+|++||++||+++++.|
T Consensus 235 ~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sI 310 (449)
T KOG1304|consen 235 PAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSI 310 (449)
T ss_pred ccccchhhhHHHHHHHHHHhccceEEEehhhcc----cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceE
Confidence 334457899999999999999999999999996 99997642 3888899999999999999999999999999999
Q ss_pred hcccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhcccchhhhh
Q 017162 229 LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLG 308 (376)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~ 308 (376)
+.|+|+ +++.+.+++++++.++.|||+|++|..|++|+.+.++.+.++.++..+..|..+++++..+|..+||++++++
T Consensus 311 TLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fis 389 (449)
T KOG1304|consen 311 TLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFIS 389 (449)
T ss_pred EecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHH
Confidence 999999 8999999999999999999999999999999998777665556778899999999999999999999999999
Q ss_pred hhhcccchhhHHhhhHHHHHHHhCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017162 309 FFGGFGFTPTSYFLPSIMWLVIKKPKR---FSPKWIINWASIFIGVFIMLASTIGGFRNI 365 (376)
Q Consensus 309 l~Ga~~~~~l~~ilP~l~~l~~~~~~~---~~~~~~~~~~~i~~g~~~~v~gt~~si~~l 365 (376)
++||++++.+++++|+++|++.++++. .+|+++.|.+++++|++.++.|||+|++++
T Consensus 390 LVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 390 LVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999999999999987654 468889999999999999999999999864
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=4.2e-51 Score=397.30 Aligned_cols=356 Identities=18% Similarity=0.200 Sum_probs=286.9
Q ss_pred chhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 2 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
++++++.++.||.+++.+++++. + ..||+|++++++|| +|++++++++.+.++|+|++|+++++|.+++.++....
T Consensus 96 llil~a~ls~ys~~lL~~~~~~~-~--~~sY~~la~~~~G~-~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~ 171 (467)
T PTZ00206 96 YLIIITAMTIFSIYALGVAADKT-N--IRTYEGVARVLLGP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNA 171 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-C--CCCHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 57789999999999999988753 3 34999999999997 69999999999999999999999999999988764321
Q ss_pred CC---CC-cchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccccccc---ccccC---CCc
Q 017162 82 HC---KP-LRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVS---YAYKH---TSS 151 (376)
Q Consensus 82 ~~---~~-~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~---~~~ 151 (376)
.. .. .++..+.+++.++++|++++|++++++++|.+++.+.+...+.+++.+..++.+++.+ .+..+ ...
T Consensus 172 ~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (467)
T PTZ00206 172 PDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIIL 251 (467)
T ss_pred cchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEE
Confidence 10 01 1233344567778999999999999999999999866544444444444444333211 11100 111
Q ss_pred chhHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCchhhhcc
Q 017162 152 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMA 231 (376)
Q Consensus 152 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~ 231 (376)
+....+.+.++|+++|||.||.++||+++|| |||+.+++.+++..++.++.++|..+|++||++||++++++++.|
T Consensus 252 f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn 327 (467)
T PTZ00206 252 FNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLM 327 (467)
T ss_pred ecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHh
Confidence 1223468899999999999999999999996 888888888999999999999999999999999999999999999
Q ss_pred c-CCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhcccchhhhhhh
Q 017162 232 L-KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFF 310 (376)
Q Consensus 232 ~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~l~ 310 (376)
+ |.++....++++++.+.++.+||++.+|+|+.+++.+..+.+ +.+++++...+..++..+.++|+.+||++.+++++
T Consensus 328 ~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lv 406 (467)
T PTZ00206 328 YDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDAR-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFA 406 (467)
T ss_pred CCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcc-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhh
Confidence 9 455667788899999999999999999999999998743322 23445666667777778899999999999999999
Q ss_pred hcccchhhHHhhhHHHHHHH---hCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017162 311 GGFGFTPTSYFLPSIMWLVI---KKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIV 366 (376)
Q Consensus 311 Ga~~~~~l~~ilP~l~~l~~---~~~~~~~~~~~~~~~~i~~g~~~~v~gt~~si~~l~ 366 (376)
||++++.++|++|+++|++. .+++...++++.+++++++|++..+.|||+|+++.+
T Consensus 407 Ga~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 407 GSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 99999999999999999984 233334456788999999999999999999999876
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-48 Score=368.30 Aligned_cols=357 Identities=41% Similarity=0.751 Sum_probs=313.2
Q ss_pred chhhHHHHHHHHHHHHHhCcccC---CCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHH
Q 017162 2 VLVISWVTTLNTMWQMINLHECV---PGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 78 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~---~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 78 (376)
+|++.++++.||.++|.+|.+.+ +++|+++|.|+++++||++ +++++..++...++|+++.|++..+|+++.+.+.
T Consensus 74 ~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~afG~~-~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~ 152 (437)
T KOG1303|consen 74 ILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAAFGPK-GRLLVSVLQYLELFGICVVYIILAGDNLKALFPI 152 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHHhCCC-ceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999997544 3556789999999999986 5999999999999999999999999999999998
Q ss_pred hccCCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccc-cccccCCCcchhHHH
Q 017162 79 ACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENV-SYAYKHTSSADYMFR 157 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 157 (376)
...++...+.+.|+++++++.+|++++|+++.++++|..+.+.++.+..+.+..+..++...+. +.+.....+. ..
T Consensus 153 ~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~---~~ 229 (437)
T KOG1303|consen 153 VSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTI---PT 229 (437)
T ss_pred cCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCC---cc
Confidence 8654423446889999999999999999999999999999999998888888777777644421 1222111111 11
Q ss_pred HHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCchhhhcccCCchH
Q 017162 158 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGW 237 (376)
Q Consensus 158 ~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~ 237 (376)
.++++|+++|+|++|..+||++++| |+|++ |+|++..++.+++.+|..+++.||++|||+++|+++.|++++.|
T Consensus 230 ~f~a~g~iaFaf~gH~v~peIq~tM----k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~ 303 (437)
T KOG1303|consen 230 VFTALGIIAFAYGGHAVLPEIQHTM----KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTW 303 (437)
T ss_pred hhhhhhheeeeecCCeeeeehHhhc----CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchh
Confidence 1899999999999999999999996 89987 56999999999999999999999999999999999999976689
Q ss_pred HHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcC-CC-CCchhhhhhHHHHHHHHHHHHHhcccchhhhhhhhcccc
Q 017162 238 LIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN-FP-PGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGF 315 (376)
Q Consensus 238 ~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~l~Ga~~~ 315 (376)
....+|+++.+|++.++++...|+.+.+|+....+.+ .+ +....|...|+.+++.+.++|+.+|.|+++++++||+..
T Consensus 304 ~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~ 383 (437)
T KOG1303|consen 304 LIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLF 383 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHH
Confidence 9999999999999999999999999999999975543 11 355689999999999999999999999999999999999
Q ss_pred hhhHHhhhHHHHHHHhCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 017162 316 TPTSYFLPSIMWLVIKKPKRFSPKWIINWAS-IFIGVFIMLASTIGGFRNIVAD 368 (376)
Q Consensus 316 ~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~-i~~g~~~~v~gt~~si~~l~~~ 368 (376)
.++++++|+++|+..+|.++...+|..++.+ .++|++.++....+++++++.+
T Consensus 384 ~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 384 WPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 9999999999999999999988899999999 7999999999999999988753
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=7.6e-49 Score=378.81 Aligned_cols=355 Identities=28% Similarity=0.448 Sum_probs=299.1
Q ss_pred chhhHHHHHHHHHHHHHhCcccCC-CcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhc
Q 017162 2 VLVISWVTTLNTMWQMINLHECVP-GVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC 80 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~~-~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~ 80 (376)
++++++.++.||.+++.|+++..+ +++..+|+|++++.+||+ +++++++++.+.++|.+++|++..+|.++++.+...
T Consensus 39 ~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~ 117 (409)
T PF01490_consen 39 LLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGPK-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFF 117 (409)
T ss_pred HHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc-ccccccchheeccccccceeEEEeeeeeeccccccc
Confidence 578899999999999999987543 334669999999999985 799999999999999999999999999999987754
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHh
Q 017162 81 SHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFN 160 (376)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (376)
++ ...++..+.++..++++|++++|+++++++.|.++.++.+..+.+...........++.+.+..+..+..++.+++.
T Consensus 118 ~~-~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (409)
T PF01490_consen 118 GD-LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFS 196 (409)
T ss_pred cc-ccccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHH
Confidence 32 24677888888999999999999999999999999997654322222211112111111221111123456689999
Q ss_pred HhhHHHHhcccceeeccccccCCcCCCCCcc-cchhhhhhhHHHHHHHHHhhhcceeecccCCCCchhhhcccCCchHHH
Q 017162 161 ALGQISFAFAGHAVALEIQATIPSTPEKPSK-ILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLI 239 (376)
Q Consensus 161 ~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~-~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~ 239 (376)
++|+++|||.||+++||+++|| |||++ ++++++...++.+++++|..+|..||++||+++++|++.|++++++..
T Consensus 197 ~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~ 272 (409)
T PF01490_consen 197 AFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLI 272 (409)
T ss_pred hhhhhhhhhhcccccceeeeec----cCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCccccc
Confidence 9999999999999999999996 88888 567799999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHhhceeccchHHHHHHHHhhh--------cCCCCCchhhhhhHHHHHHHHHHHHHhcccchhhhhhhh
Q 017162 240 AAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFG 311 (376)
Q Consensus 240 ~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~l~G 311 (376)
.++++++.++++.+||++.+|.++.+|+.+.++ ++.+.++++|..+|..++..++++|..+||++++++++|
T Consensus 273 ~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~G 352 (409)
T PF01490_consen 273 IIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVG 352 (409)
T ss_pred ccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccc
Confidence 899999999999999999999999999998753 223446788999999999999999999999999999999
Q ss_pred cccchhhHHhhhHHHHHHHhCCCCCchHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 017162 312 GFGFTPTSYFLPSIMWLVIKKPKRFSPKW-----IINWASIFIGVFIMLASTIGGF 362 (376)
Q Consensus 312 a~~~~~l~~ilP~l~~l~~~~~~~~~~~~-----~~~~~~i~~g~~~~v~gt~~si 362 (376)
+++++.++|++|+++|++.+++++.++++ ..++.++++|++.++.|+|+++
T Consensus 353 a~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 353 ALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 99999999999999999998887644332 4578999999999999999876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=5e-44 Score=346.26 Aligned_cols=353 Identities=20% Similarity=0.280 Sum_probs=286.6
Q ss_pred chhhHHHHHHHHHHHHHhCccc----CCC--c--c--cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhh
Q 017162 2 VLVISWVTTLNTMWQMINLHEC----VPG--V--R--FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKC 71 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~----~~~--~--~--~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~ 71 (376)
.++++++++.||.+++.++..+ .++ . + ..+|.|+++..+||+ ++.+.......++++.|+.|.+..++.
T Consensus 82 ~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~-~~~~~~~~~~v~l~~~~v~~li~~~~~ 160 (473)
T PLN03074 82 FQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPY-WKNVGLAFNCTFLLFGSVIQLIACASN 160 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChh-HHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 4788999999999999986432 221 1 1 137899999999985 577778888999999999999988877
Q ss_pred HHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCc
Q 017162 72 LKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSS 151 (376)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 151 (376)
+..+- ...+.+.|+++++++.+|++++|++++++++|.+|+.+++...+.++.....++.+++.+. +.
T Consensus 161 ~~~l~-------~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~-----~~ 228 (473)
T PLN03074 161 IYYIN-------DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH-----SG 228 (473)
T ss_pred hhhhC-------CCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-----CC
Confidence 66541 2467788999999999999999999999999999988765543333334444433332221 12
Q ss_pred chhHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCc--hhhh
Q 017162 152 ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD--DNVL 229 (376)
Q Consensus 152 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~--~~il 229 (376)
+.++..++.++++++|+|++|..+||+++|| |||++++ ++...++......|..+|+.||+.|||+++ ++.+
T Consensus 229 ~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l 302 (473)
T PLN03074 229 PTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQKFK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAF 302 (473)
T ss_pred chhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhccc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHH
Confidence 3467788888999999999999999999996 9999877 888899999999999999999999999976 4678
Q ss_pred cccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhcccchhhhhh
Q 017162 230 MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGF 309 (376)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~l 309 (376)
.|+|++. ....+++++.++++.+||+++.|+.+..|+....+ ..+....|..+|+.++..++++|+.+|+|++++++
T Consensus 303 ~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsL 379 (473)
T PLN03074 303 SLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSA 379 (473)
T ss_pred hcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 8898654 45789999999999999999999999999987542 23456778999999999999999999999999999
Q ss_pred hhcccchhhHHhhhHHHHHHHhCCC-------------CCchH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCC
Q 017162 310 FGGFGFTPTSYFLPSIMWLVIKKPK-------------RFSPK--WIINWASIFI-GVFIMLASTIGGFRNIVADASTYS 373 (376)
Q Consensus 310 ~Ga~~~~~l~~ilP~l~~l~~~~~~-------------~~~~~--~~~~~~~i~~-g~~~~v~gt~~si~~l~~~~~~~~ 373 (376)
+||++++.+++++|+++|++.++++ ..+|. .+.|++++++ |+++.+.|+|+|++++++++++++
T Consensus 380 vGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~ 459 (473)
T PLN03074 380 VGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFG 459 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhh
Confidence 9999999999999999999876543 11232 3789999986 555578999999999999999988
Q ss_pred CCC
Q 017162 374 FYT 376 (376)
Q Consensus 374 ~~~ 376 (376)
.|+
T Consensus 460 ~f~ 462 (473)
T PLN03074 460 LFA 462 (473)
T ss_pred hhh
Confidence 764
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-43 Score=312.47 Aligned_cols=356 Identities=20% Similarity=0.271 Sum_probs=304.8
Q ss_pred chhhHHHHHHHHHHHHHhCcccC-C-C--cc-cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHH
Q 017162 2 VLVISWVTTLNTMWQMINLHECV-P-G--VR-FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFV 76 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~-~-~--~~-~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 76 (376)
.|+.++.++.||+.+|++|..+. + + .| ++||.+++..+++|+.|.+.+.+.+.+.+.++|+.|.+..+|.+...+
T Consensus 152 amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~f 231 (524)
T KOG4303|consen 152 AMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCF 231 (524)
T ss_pred HHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccC
Confidence 47789999999999999995322 2 1 12 689999999999999997778999999999999999999999998776
Q ss_pred HHhccCCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHH
Q 017162 77 EMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMF 156 (376)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (376)
+.. +.+++-|+.+..+.++|.+++|+++..+.+|..++.+.+..-++++..|..+. .||+++...-.-+..
T Consensus 232 P~~-----svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~----~dW~wskv~Fsidi~ 302 (524)
T KOG4303|consen 232 PGL-----SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFV----SDWSWSKVTFSIDIN 302 (524)
T ss_pred CCC-----CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhccceeEEEEEEcc
Confidence 542 56778999999999999999999999999999999987765555555544432 134433222234667
Q ss_pred HHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCchhhhcccCCch
Q 017162 157 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPG 236 (376)
Q Consensus 157 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~ 236 (376)
+++.++|+++|+|..|...|+++.+| +||++++ ..+-++.+..+++-..+|..||++|+++++..|.+|+|+..
T Consensus 303 ~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn--~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qs 376 (524)
T KOG4303|consen 303 TFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN--VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQS 376 (524)
T ss_pred cCceEEEEEEEeeeceeecccccccc----CChhHhe--eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCccc
Confidence 88899999999999999999999985 9999987 88889999999999999999999999999999999999854
Q ss_pred HHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCC--------CCCc-h-hhhhhHHHHHHHHHHHHHhcccchhh
Q 017162 237 WLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNF--------PPGA-A-VRVVARSAYVAFTLFVGVTFPFFGDL 306 (376)
Q Consensus 237 ~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~--------~~~~-~-~~~~~~~~~~~~~~~lA~~vp~~~~v 306 (376)
....+|+++++.-++|||+.++.+.|.+|+.+.+.... ..++ + ..+..|.+++..+.+.|+++|+|..+
T Consensus 377 -fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~L 455 (524)
T KOG4303|consen 377 -FKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVEL 455 (524)
T ss_pred -hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHH
Confidence 66789999999999999999999999999987654211 1122 2 23668999999999999999999999
Q ss_pred hhhhhcccchhhHHhhhHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 017162 307 LGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYS 373 (376)
Q Consensus 307 ~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~gt~~si~~l~~~~~~~~ 373 (376)
++++|++.++.++|++|++||+++.++.....++..+..++++|...++.|.|.|..+++++++...
T Consensus 456 MGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~ 522 (524)
T KOG4303|consen 456 MGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSAD 522 (524)
T ss_pred HHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence 9999999999999999999999999998888888999999999999999999999999999998653
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-39 Score=303.35 Aligned_cols=353 Identities=19% Similarity=0.274 Sum_probs=292.4
Q ss_pred chhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 2 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
+++.+|.++.++.+++.+|..+.+ ++ +|+++++..+|+ .|+....+.......| +++|+++++|.++........
T Consensus 42 li~~~a~~s~~sl~~l~~~a~~~~-~~--ty~~l~~~~~g~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~ 116 (411)
T KOG1305|consen 42 LIVLSAFLSLLSLYLLSKCAKKSG-ER--TYSSLGDLIFGK-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFL 116 (411)
T ss_pred HHHHHHHHHHhHHHHHHHhhhhcC-CC--CHHHHHHHHcCC-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhccc
Confidence 567899999999999999987553 33 999999999998 5776666666666666 699999999999966555432
Q ss_pred CCC-C--c-chhH-HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccc-cccccccccCCCcchhH
Q 017162 82 HCK-P--L-RQTF-WILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGR-IENVSYAYKHTSSADYM 155 (376)
Q Consensus 82 ~~~-~--~-~~~~-~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 155 (376)
++. . + +++. |.+....++.|+++.|+++++++.|.++.++.+....++.+....... .+...++ .+....+
T Consensus 117 ~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~ 193 (411)
T KOG1305|consen 117 DEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSF 193 (411)
T ss_pred ccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchh
Confidence 211 1 2 3333 577889999999999999999999999999877665555544433221 0111111 1122233
Q ss_pred HHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCchhhhcccCCc
Q 017162 156 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRP 235 (376)
Q Consensus 156 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~ 235 (376)
.+.+.++|+++|||.||+++.|+++|| |||+++++.++...+...+.++|..+|++||+.||+++.+|++.++|+.
T Consensus 194 ~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~ 269 (411)
T KOG1305|consen 194 SSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSI 269 (411)
T ss_pred hhhhhhhhhhheeeeccccceeeeeee----eCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcc
Confidence 789999999999999999999999997 9999999999999999999999999999999999999999999999864
Q ss_pred hHH------HHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcC--CCCCchhhhhhHHHHHHHHHHHHHhcccchhhh
Q 017162 236 GWL------IAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN--FPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLL 307 (376)
Q Consensus 236 ~~~------~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~ 307 (376)
+.. ...++..+.++++.++|+..+|+|..+++.+.+++. .+.++.+++.++..++....+.|+.+|++++++
T Consensus 270 ~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~ 349 (411)
T KOG1305|consen 270 LNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIF 349 (411)
T ss_pred cchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 433 468999999999999999999999999998876543 246788999999999999999999999999999
Q ss_pred hhhhcccchhhHHhhhHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017162 308 GFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVAD 368 (376)
Q Consensus 308 ~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~gt~~si~~l~~~ 368 (376)
+++||++++.++|++|+++|++..|+ +.++....++..++|+..++.|+..-+.++..+
T Consensus 350 ~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 350 GFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999887 556678899999999999999999999888765
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.95 E-value=4.6e-26 Score=217.96 Aligned_cols=350 Identities=17% Similarity=0.215 Sum_probs=259.6
Q ss_pred chhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 2 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
++++.+..+.+|.+++.|+.++.|+. +.+|.|++++.+||+ ++++.++...+.+++.+.+|....+|.+++..++...
T Consensus 45 ~l~i~~~~t~~s~~~l~~~~~~~~~~-~~~~~~~~~~~~G~~-~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~ 122 (415)
T COG0814 45 LLIIAWPLTYLSLLLLLEALLSSPNG-KASITSLVEDYLGKK-GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG 122 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC-cccHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc
Confidence 56789999999999999998776543 259999999999996 6899999999999999999999999999999988653
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhH
Q 017162 82 HCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNA 161 (376)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (376)
.. +.+|....++...++.++++.++...++..+.+........++.........+ ++.. ...+.. ...++.+...+
T Consensus 123 ~~-~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~-~~~l-~~~~~~-~~~~~~~~~~~ 198 (415)
T COG0814 123 LN-PLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWN-PANL-FALPSA-SQSFWKYLLLA 198 (415)
T ss_pred cC-CcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-HHHH-hccccc-chhhHHHHHHH
Confidence 32 26778888888889999999999999999999888866544433332221111 1100 011001 13567789999
Q ss_pred hhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCchhhhcccCCchHH---
Q 017162 162 LGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWL--- 238 (376)
Q Consensus 162 ~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~--- 238 (376)
+|++.|+|+||+++|++++|| +++++.+.+|+...+..+..++|..+++++|..+|+++.+|++++.++++..
T Consensus 199 ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~ 274 (415)
T COG0814 199 IPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSA 274 (415)
T ss_pred hhHHHhhhhCCccchHHHHHh----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHH
Confidence 999999999999999999997 6565545779999999999999999999999999999999999999764332
Q ss_pred ----------HHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCC--C--CCchhhhhhHHHHHHHHHHHHHhcccch
Q 017162 239 ----------IAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNF--P--PGAAVRVVARSAYVAFTLFVGVTFPFFG 304 (376)
Q Consensus 239 ----------~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~lA~~vp~~~ 304 (376)
....++.-.+.+..||--.....+|..++.+.++++. + .............+......+...|..+
T Consensus 275 ~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 354 (415)
T COG0814 275 LAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAG 354 (415)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHH
Confidence 2233444455555555555556667777777652211 1 1122334445556677777888888888
Q ss_pred hhhhhhhcccchhhHHhhhHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 017162 305 DLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGG 361 (376)
Q Consensus 305 ~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~gt~~s 361 (376)
.++..+|+...+.+.++.|...+.+....+..+.++...++++++|+..+..-.+..
T Consensus 355 ~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 355 GLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887776655444333222578888899988888766654
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.83 E-value=8.4e-19 Score=166.92 Aligned_cols=334 Identities=17% Similarity=0.226 Sum_probs=227.8
Q ss_pred chhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 2 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
++++++..+.+|..++.|...+.++. .+|.+++++.+||+ |+++..+...+..++.+++|....++.+++.++...+
T Consensus 39 ~l~~~w~~~~~s~l~~~E~~~~~~~~--~~~~~~a~~~lG~~-g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~ 115 (394)
T PF03222_consen 39 LLLIAWPLMYYSGLLLAEVSLNTPEG--SSLTSMAEKYLGKK-GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG 115 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC
Confidence 56788999999999999987655543 49999999999985 7899999999999999999999999999999887642
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhH
Q 017162 82 HCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNA 161 (376)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (376)
.+.+++.-..++.++.-.+.+. ..+...+++..-+...+...........-+- +.+.-....+...++...+.+
T Consensus 116 --~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~---~~~~L~~~~~~~~~~~~~~~~ 189 (394)
T PF03222_consen 116 --TDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMIISFIILVVYLIPHW---NPSNLLDAPPSPSDWSYILPA 189 (394)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CHHHhhccccccccHHHHHHH
Confidence 2344444434433333333333 2223344433332222211111111111111 111101111234677889999
Q ss_pred hhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhh--cceeec---------ccCCCCch--hh
Q 017162 162 LGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPV--ALIGYW---------AFGQDVDD--NV 228 (376)
Q Consensus 162 ~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~--g~~gy~---------~fg~~~~~--~i 228 (376)
+|+..++|+.|+.+|++.+.++ +|++| .+|++..+..+..++|+.. ...|-+ ..+++..+ ..
T Consensus 190 lPv~~~Sf~f~~ivPsl~~~~~---~d~~k--~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~ 264 (394)
T PF03222_consen 190 LPVLVFSFGFHNIVPSLVKYLG---GDPKK--IRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSA 264 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHhC---ccHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHH
Confidence 9999999999999999999974 45554 4599999998888888854 233311 22222221 23
Q ss_pred hcccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhccc-chhhh
Q 017162 229 LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLL 307 (376)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~-~~~v~ 307 (376)
+.+..++.+......++-.+.+.+||--.....+|.+++.++.++ +...|.........++.++|...|+ |-..+
T Consensus 265 ~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~----~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al 340 (394)
T PF03222_consen 265 LANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN----NSSGRLKTWLLTFLPPLIFALLFPNGFLIAL 340 (394)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----cccchHHHHHHHHHhHHHHHHHCcHHHHHHH
Confidence 334334456677789999999999999999999999999986632 2334555666778889999999997 88999
Q ss_pred hhhhcccchhhHHhhhHHHHHHHhCCCCCc-h----HHHHHHHHHHHHHHHH
Q 017162 308 GFFGGFGFTPTSYFLPSIMWLVIKKPKRFS-P----KWIINWASIFIGVFIM 354 (376)
Q Consensus 308 ~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~-~----~~~~~~~~i~~g~~~~ 354 (376)
++.| ...+.+..++|+++.+|.|++++.+ + .+.....++++|++..
T Consensus 341 ~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 341 GYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred Hhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 9999 8889999999999999998766432 2 2345555556665544
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.82 E-value=2.3e-18 Score=162.68 Aligned_cols=333 Identities=16% Similarity=0.112 Sum_probs=225.4
Q ss_pred chhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 2 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
+|++++....||..++.|...+.++ ..++.+++|+.+||+ |+.+..++.....|+.+++|+...+|.+++.+++. +
T Consensus 47 ~l~~~W~~M~~taLlllEv~l~~~~--g~~~~tma~~~LG~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~ 122 (414)
T PRK10483 47 ALIFTWFCMLHSGLMILEANLNYRI--GSSFDTITKDLLGKG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-S 122 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-C
Confidence 5788999999999999998765554 349999999999985 79999999999999999999999999999998763 1
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHH---HHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHH
Q 017162 82 HCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVS---LAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRV 158 (376)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (376)
.+.+++.-.+++.++.-...+. ..+...+++ ..+.+.+++..+.... .+...+.. .+. .+....++...
T Consensus 123 --~~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~~i~~f~~~~~~l~---~~i~~~~L-~~~-~~~~~~~~~~~ 194 (414)
T PRK10483 123 --LNVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGAKVITFFLTFGSLL---GHVQPATL-FNV-AESNASYAPYL 194 (414)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCHHHH-hcc-ccccchhHHHH
Confidence 1344454445555555555554 234444444 3333322221111111 11111100 000 01112335568
Q ss_pred HhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhh--hcceeecc---------cCCCCch-
Q 017162 159 FNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFP--VALIGYWA---------FGQDVDD- 226 (376)
Q Consensus 159 ~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~--~g~~gy~~---------fg~~~~~- 226 (376)
..++|+..++|+.|+++|++.+.++ +|++ +.+|++..+..+..++|+. ....|-.. -|++++.
T Consensus 195 ~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L 269 (414)
T PRK10483 195 LMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVL 269 (414)
T ss_pred HHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHH
Confidence 8999999999999999999999873 4555 4569999999999999986 22233221 2222211
Q ss_pred -hhhcccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhccc-ch
Q 017162 227 -NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FG 304 (376)
Q Consensus 227 -~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~-~~ 304 (376)
+.+.+..++.+......++..+.+.+||--....++|.+.+.++.+++ ...|...-....+++.++|+..|+ |-
T Consensus 270 ~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~----~~~r~~~~~ltflPPl~~al~~P~~Fl 345 (414)
T PRK10483 270 VQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS----AMGRFKTALLTFLPPVVGGLLFPNGFL 345 (414)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhHHHHHHHhHHHHH
Confidence 111121233355567788888999999999999999999999976532 334555666789999999999998 88
Q ss_pred hhhhhhhcccchhhHHhhhHHHHHHHhCC-CCCchH----HHHHHHHHHHHHHHHHH
Q 017162 305 DLLGFFGGFGFTPTSYFLPSIMWLVIKKP-KRFSPK----WIINWASIFIGVFIMLA 356 (376)
Q Consensus 305 ~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~-~~~~~~----~~~~~~~i~~g~~~~v~ 356 (376)
..+++.|.. ...+.-++|+++.++.||+ +++.++ +..-.+++++|+...+.
T Consensus 346 ~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~~ 401 (414)
T PRK10483 346 YAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNALV 401 (414)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHHH
Confidence 899999977 6788889999999999976 222221 22335555566555444
No 11
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.81 E-value=1.9e-18 Score=165.35 Aligned_cols=314 Identities=15% Similarity=0.151 Sum_probs=223.2
Q ss_pred chhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 2 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
++++.+..+.++...+.|+..+.|+. .++.+.+++.+|| ++.++..+.....++..+.+|....++.++..+++...
T Consensus 33 ~~i~~~~~~~~~~l~~~el~~~~p~~--~~~~~~~~~~~G~-~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~ 109 (381)
T TIGR00837 33 LLILLWFLMLHSGLLLLEVYLTYPGG--ASFNTIAKDLLGK-TGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFG 109 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC
Confidence 35678899999999999987777654 4999999999998 57888889999999999999999999999998876432
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhH
Q 017162 82 HCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNA 161 (376)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (376)
. ..++....++..+++.++.+ +..+...+++.+.+...+...+...+....+...+ +..+. ......+.+...+
T Consensus 110 ~--~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~~~~--~~~~~-~~~~~~~~~~~~a 183 (381)
T TIGR00837 110 F--PWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALVFSGLLPHVKGD--LLLDV-ALDTSYWPYILSA 183 (381)
T ss_pred C--CccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH--HHhcC-ccccccHHHHHHH
Confidence 1 23444444444444444444 46678888887776655543333222222221111 11110 0112245678899
Q ss_pred hhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCc----------hh---h
Q 017162 162 LGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD----------DN---V 228 (376)
Q Consensus 162 ~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~----------~~---i 228 (376)
++...++|++|.+++++.+|+ +|+ +++.+|+...+..++.++|+.+........+.+.- ++ .
T Consensus 184 ~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~ 258 (381)
T TIGR00837 184 LPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNA 258 (381)
T ss_pred HHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999999986 545 45778999999999999999775544444332211 11 1
Q ss_pred hcccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhcccch-hhh
Q 017162 229 LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFG-DLL 307 (376)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~-~v~ 307 (376)
..+.-++.+...+......+.+.+|+.-...+.++...+.++++++ +..|.....+...++.++|.+.|+.. ..+
T Consensus 259 ~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~----~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l 334 (381)
T TIGR00837 259 LQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS----KKGRFKTGLLTFLPPLVFALFYPEGFLYAI 334 (381)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----cCCCchhhhhhHHhHHHHHHHhhHHHHHHH
Confidence 2221122345667788888999999999999999998888876422 22356667777889999999999865 889
Q ss_pred hhhhcccchhhHHhhhHHHHHHHhCCC
Q 017162 308 GFFGGFGFTPTSYFLPSIMWLVIKKPK 334 (376)
Q Consensus 308 ~l~Ga~~~~~l~~ilP~l~~l~~~~~~ 334 (376)
+..| ..+..+.+++|++++++.||++
T Consensus 335 ~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 335 GYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999 8889999999999999988764
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.81 E-value=7e-18 Score=159.21 Aligned_cols=338 Identities=14% Similarity=0.115 Sum_probs=226.2
Q ss_pred chhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 2 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
+|++++....||..++.|...+.|+ ..++.+++|+.+||+ |+.+..++..+..|+.+++|+...++.+++.+++..+
T Consensus 45 ll~~~w~~M~~t~LlllEv~l~~~~--g~~l~tma~~~LG~~-g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~ 121 (415)
T PRK09664 45 ILIIAWFSMLHSGLLLLEANLNYPV--GSSFNTITKDLIGNT-WNIISGITVAFVLYILTYAYISANGAIISETISMNLG 121 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc
Confidence 5788999999999999998766654 349999999999985 7999999999999999999999999999999875321
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCC-cchhHHHHHh
Q 017162 82 HCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTS-SADYMFRVFN 160 (376)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 160 (376)
.+.+++...+++.++.-+..+.. .+...+++..-....+...+..+....-+-..+... +.+... ..........
T Consensus 122 --~~i~~~~~~llF~~~~~~~v~~g-t~~vd~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~-~~~~~~~~~~~~~~i~~ 197 (415)
T PRK09664 122 --YHANPRIVGICTAIFVASVLWIS-SLAASRITSLFLGLKIISFVIVFGSFFFQVDYSILR-DATSTTAGTSYFPYIFM 197 (415)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHh-cCccccccchHHHHHHH
Confidence 13344444455555555555542 244444443222222111111111111111111000 000000 0112346888
Q ss_pred HhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhh--hcceee---------cccCCCCchhhh
Q 017162 161 ALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFP--VALIGY---------WAFGQDVDDNVL 229 (376)
Q Consensus 161 ~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~--~g~~gy---------~~fg~~~~~~il 229 (376)
++|++.++|+.|+++|++.+.++ +|+++. +|++..+..+..++|.. .+..|- ...|++++.-+.
T Consensus 198 alPVl~~SFgfh~iIPsl~~y~~---~d~~~~--~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~ 272 (415)
T PRK09664 198 ALPVCLASFGFHGNIPSLIICYG---KRKDKL--IKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVK 272 (415)
T ss_pred HHHHHHHhhhCCCcchHHHHHhC---ccHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHH
Confidence 99999999999999999999873 565554 48888888888888852 222231 223333333111
Q ss_pred ---cccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhccc-chh
Q 017162 230 ---MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGD 305 (376)
Q Consensus 230 ---~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~-~~~ 305 (376)
.+ .++.+.....+++..+.+.+||--....++|.+.+.++.+++ ...|...-....+++.++|+..|+ |-.
T Consensus 273 s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~----~~~r~~~~~ltflPPl~~al~~P~gFl~ 347 (415)
T PRK09664 273 SFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS----HGGRFKTVLLTFLPPALLYLIFPNGFIY 347 (415)
T ss_pred HHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----cccceeeehhhHhhhHHHHHHhhHHHHH
Confidence 12 233466677888889999999999999999999999966532 234566667789999999999998 888
Q ss_pred hhhhhhcccchhhHHhhhHHHHHHHhCC-CCCch----HHHHHHHHHHHHHHHHHHH
Q 017162 306 LLGFFGGFGFTPTSYFLPSIMWLVIKKP-KRFSP----KWIINWASIFIGVFIMLAS 357 (376)
Q Consensus 306 v~~l~Ga~~~~~l~~ilP~l~~l~~~~~-~~~~~----~~~~~~~~i~~g~~~~v~g 357 (376)
.++..|.. .+.+.-++|+++-+|.||+ +.... .+..-.+.+++|++..+.-
T Consensus 348 AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~~ 403 (415)
T PRK09664 348 GIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCW 403 (415)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHHH
Confidence 99999996 5688889999999999976 22211 2355556666776665543
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.80 E-value=5.8e-18 Score=160.53 Aligned_cols=334 Identities=14% Similarity=0.115 Sum_probs=223.9
Q ss_pred chhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 2 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
+|++++.+..|+.+++.|+..+.++ ..++.+++|+.+||+ |+++..++..+..|..+.+|....+|.+++.++++.+
T Consensus 39 ~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~-g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~ 115 (403)
T PRK15132 39 LLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRY-GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTG 115 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc
Confidence 4677888899999999997654443 359999999999986 7899999999999999999999999999999877542
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccc-cCCCcchhHHHHHh
Q 017162 82 HCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAY-KHTSSADYMFRVFN 160 (376)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 160 (376)
. +.+.....+++.++.-...+. ..+...+++..-+...+...+...... . ++.+.+. ...+ . +......
T Consensus 116 ~--~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~~~~~~~l-~----p~~~~~~L~~~~-~-~~~~~~~ 185 (403)
T PRK15132 116 I--SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFLVVMLALM-M----PHIHKVNLLTLP-L-QQGLALS 185 (403)
T ss_pred C--CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HhcCHHHHhcCC-c-cccHHHH
Confidence 2 223333333333332223333 224444444332222111111111111 1 1111111 0001 1 1124889
Q ss_pred HhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCC----------chhhhc
Q 017162 161 ALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV----------DDNVLM 230 (376)
Q Consensus 161 ~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~----------~~~il~ 230 (376)
++|+..++|+.|+++|++.+.++ +|++ +.+|++..+..+..++|+..=......-+.+. -++.+.
T Consensus 186 ~iPvl~~SFgfh~iIpsl~~y~~---~~~~--~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~ 260 (403)
T PRK15132 186 AIPVIFTSFGFHGSVPSIVSYMG---GNIR--KLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQ 260 (403)
T ss_pred HHHHHHHHhhCCcccHHHHHHhC---cCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHH
Confidence 99999999999999999999863 4444 45599999999999988854433333322221 112333
Q ss_pred cc---CCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhccc-chhh
Q 017162 231 AL---KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDL 306 (376)
Q Consensus 231 ~~---~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~-~~~v 306 (376)
.+ .+..+....+.+.-.+.+.+||--....++|.+.+.++++++ ...|........++++++|...|+ |...
T Consensus 261 ~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~----~~~r~~~~~l~flppli~a~~~P~~F~~a 336 (403)
T PRK15132 261 ALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT----VGGRLQTGLITFLPPLAFALFYPRGFVMA 336 (403)
T ss_pred HHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc----ccCCchhehhhHHHHHHHHHHhHHHHHHH
Confidence 32 234566677888888999999999999999999999865422 233666778889999999999998 8889
Q ss_pred hhhhhcccchhhHHhhhHHHHHHHhCCC-CCch----HHHHHHHHHHHHHHHHHHHH
Q 017162 307 LGFFGGFGFTPTSYFLPSIMWLVIKKPK-RFSP----KWIINWASIFIGVFIMLAST 358 (376)
Q Consensus 307 ~~l~Ga~~~~~l~~ilP~l~~l~~~~~~-~~~~----~~~~~~~~i~~g~~~~v~gt 358 (376)
.++.|.. .+.+.+++|+++-+|.|+++ .++. .+...++.+++|++..+.-.
T Consensus 337 l~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 337 LGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHH
Confidence 9998864 68999999999999998755 2122 34667777888877765433
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.64 E-value=2.5e-14 Score=135.41 Aligned_cols=354 Identities=13% Similarity=0.078 Sum_probs=220.6
Q ss_pred chhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 2 VLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 2 ll~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
++++++.+++|+.+.+.|.....++ +..++.+++++.+||+ |+.+..++-.+..+..+.+|...+.+.+++.+.++.+
T Consensus 55 llll~~p~m~~s~l~L~e~~L~~~~-~~~~i~~v~~~~lG~~-g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~ 132 (443)
T PRK13629 55 MLVLAYPIAFYCHRALARLCLSGSN-PSGNITETVEEHFGKT-GGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLG 132 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5677889999999999997544321 2359999999999997 5778899999999999999998888888877666532
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccccccc-ccc---cCCCcchhHHH
Q 017162 82 HCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVS-YAY---KHTSSADYMFR 157 (376)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~ 157 (376)
. .+.++....++..+......+.. -+..-+++..-+...+...+......+-+-..+... .+. +..........
T Consensus 133 ~-~~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~ 210 (443)
T PRK13629 133 F-APLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVT 210 (443)
T ss_pred c-CCccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHH
Confidence 1 12344444444444444444432 244444443222221111111111111110000000 000 00000011245
Q ss_pred HHhHhhHHHHhcccceeeccccccCCcCCC---CCc--ccchhhhhhhHHHHHHHHHhhhcceeecccCCCC-------c
Q 017162 158 VFNALGQISFAFAGHAVALEIQATIPSTPE---KPS--KILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-------D 225 (376)
Q Consensus 158 ~~~~~~~~~faf~~~~~~~~i~~~m~~~m~---~p~--~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-------~ 225 (376)
...++|+..++|+.|+.+|++.+.+|.+.+ +++ +++.+|++..+..+..++|+..-+.....-+++. +
T Consensus 211 l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn 290 (443)
T PRK13629 211 VWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQN 290 (443)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 788999999999999999998887432222 233 4566799999999888888876665555554332 1
Q ss_pred hhhhcc----cCC---c-----hHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhh----hc-CCCCCchhhhhhHHH
Q 017162 226 DNVLMA----LKR---P-----GWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIK----RM-NFPPGAAVRVVARSA 288 (376)
Q Consensus 226 ~~il~~----~~~---~-----~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~ 288 (376)
.+++.. +++ . .+......+...+.+..||--....++|.++.+..+ .+ +..+.+..+......
T Consensus 291 ~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (443)
T PRK13629 291 IPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIF 370 (443)
T ss_pred CcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHH
Confidence 122222 222 1 235556677778899999999999999999999842 11 112234446666777
Q ss_pred HHHHHHHHHHhcccchhhhhhhhcccchhhHHhhhHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 017162 289 YVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIG 360 (376)
Q Consensus 289 ~~~~~~~lA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~gt~~ 360 (376)
+.+.++..+..-|++=+++.-.|+--...+.|++|...-.|.-.-++.| .+..|+++.+.|++....-.|.
T Consensus 371 ~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 371 IMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHHHHHHHh
Confidence 8889999999999887777755666666778888986665543212111 1236889999998887666553
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.47 E-value=1.4e-12 Score=124.29 Aligned_cols=319 Identities=9% Similarity=0.030 Sum_probs=197.5
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
++...+++++.+++.|.....+. +..++.|++++.|||+ +..+..+......+..+.+|.....+.+++...++...
T Consensus 41 l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~-~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~- 117 (397)
T TIGR00814 41 IIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKN-WGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT- 117 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 33455556777777775322222 1349999999999986 56677898899999999999999999999988775422
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhh
Q 017162 84 KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG 163 (376)
Q Consensus 84 ~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (376)
+.+.+....+..+.++-.......+.+.+++.+-+...+............+-..+. ....+ .....+.+...+++
T Consensus 118 -~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~~~~~--L~~~p-~~~~~~~~i~~alp 193 (397)
T TIGR00814 118 -APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHWNGAN--LTTFP-SFNGFLKTLWLTIP 193 (397)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--HhcCC-cccchHHHHHHHHH
Confidence 122232222222222222333456666666655443332222221211111111111 10000 01124578999999
Q ss_pred HHHHhcccceeeccccccCCcCCCCCc--ccchhhhhhhHHHHHHHHHhhhcceeecccCCCCch-------hhhc----
Q 017162 164 QISFAFAGHAVALEIQATIPSTPEKPS--KILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD-------NVLM---- 230 (376)
Q Consensus 164 ~~~faf~~~~~~~~i~~~m~~~m~~p~--~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~-------~il~---- 230 (376)
...++|.+|+.+|++..+.|.+.+||+ +++.+|+...+..+..++|+..-+......+++.-. +.+.
T Consensus 194 v~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~ 273 (397)
T TIGR00814 194 VMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLAN 273 (397)
T ss_pred HHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHh
Confidence 999999999999999732211124333 455669999999999998887766666666544311 1222
Q ss_pred ccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcC----CCCCchhhhhhHHHHHHHHHHHHHhcccchhh
Q 017162 231 ALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN----FPPGAAVRVVARSAYVAFTLFVGVTFPFFGDL 306 (376)
Q Consensus 231 ~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v 306 (376)
..++ .+...+..+.-.+.+..||--....++|.+++.+.+..+ ..+++..+......+...+...|..-|++=++
T Consensus 274 ~~~~-~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~ 352 (397)
T TIGR00814 274 HFNA-AWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSF 352 (397)
T ss_pred hcCC-cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 1222 345556677778889999999999999999998832211 11233445566677788999999999988777
Q ss_pred hhhhhcccchhhHHhhhHHHHHHH
Q 017162 307 LGFFGGFGFTPTSYFLPSIMWLVI 330 (376)
Q Consensus 307 ~~l~Ga~~~~~l~~ilP~l~~l~~ 330 (376)
+.-.|+--...+.|++|...-.|.
T Consensus 353 i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 353 IEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcc
Confidence 775555555677788898665554
No 16
>PRK11021 putative transporter; Provisional
Probab=98.75 E-value=8.4e-06 Score=78.88 Aligned_cols=193 Identities=12% Similarity=0.139 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
++.++..........|...+.|+.. ..-.-+++.+||++|. ...............+......+.+...+ +..
T Consensus 39 ~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~gf-~~gw~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 111 (410)
T PRK11021 39 PLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRLGR-VTGWLFLSVIPVGLPAALQIAAGFGQALF----GWS 111 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHc----CCC
Confidence 3445555555566666655666543 5566778899987653 33333332221111222222223333222 111
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhh
Q 017162 84 KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG 163 (376)
Q Consensus 84 ~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (376)
++... ...+....++-+...+..+..++++.......+.... ... ..+..+..+.+..+ ....++.++..++.
T Consensus 112 -~~~~~-~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~--~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (410)
T PRK11021 112 -SWQLL-LAELLTLALLWLLNLRGASSSANLQTVIALLIVALVV--AIW--WAGDIKPADIPFPA-PGSIEWSGLFAALG 184 (410)
T ss_pred -CchHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHH--HHcCCchhcCCCCC-CCCccHHHHHHHHH
Confidence 11111 1111112222233445566666655543332221111 111 11111111111111 11235678889999
Q ss_pred HHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcce
Q 017162 164 QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 215 (376)
Q Consensus 164 ~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~ 215 (376)
...|+|.+-......-+|+ |||+| +++|++..+...+.++|......
T Consensus 185 ~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 185 VMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 99976 78999999999999999987653
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=98.73 E-value=6.2e-06 Score=80.55 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=48.1
Q ss_pred HHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcce
Q 017162 155 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 215 (376)
Q Consensus 155 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~ 215 (376)
+.++..++....|+|.+-......-.|+ |||+| +.+|++..+..++.++|.+....
T Consensus 188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~~~~~~~~~Y~l~~~~ 243 (438)
T PRK10655 188 FSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAVLGGTLGAAVIYIVSTNV 243 (438)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 4677788889999999999999999886 99977 78999999999999999876543
No 18
>TIGR00909 2A0306 amino acid transporter.
Probab=98.72 E-value=2.1e-06 Score=83.54 Aligned_cols=310 Identities=13% Similarity=0.011 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCC
Q 017162 5 ISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK 84 (376)
Q Consensus 5 ~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~ 84 (376)
+.++........+.|...+.|+.. ..-+-.++.+||+.| ++......+........+....++.+..+.+....+.+
T Consensus 44 i~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 120 (429)
T TIGR00909 44 LAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMGELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLP 120 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCc
Confidence 345555555666666655566432 344566778998654 44566666666666667777777777776653210000
Q ss_pred Cc------chhH--HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHH
Q 017162 85 PL------RQTF--WILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMF 156 (376)
Q Consensus 85 ~~------~~~~--~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (376)
.+ +... +..+......-....+..+..++++.......+...++..+........+ +++. . .+....
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~--~~~~--~-~~~~~~ 195 (429)
T TIGR00909 121 AVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASN--NYTP--F-MPMGFG 195 (429)
T ss_pred hhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHH--hcCC--C-CCCcHH
Confidence 00 0011 11122222233334456777777776665544433222222222221111 1111 1 123456
Q ss_pred HHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCC--Cc--h---hhh
Q 017162 157 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD--VD--D---NVL 229 (376)
Q Consensus 157 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~--~~--~---~il 229 (376)
++..++....++|.+.........|+ |||+| +.+|++..+..+..++|...........+.+ .+ + .+.
T Consensus 196 ~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r-~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (429)
T TIGR00909 196 GVGAATALVFFAFIGFEAISTAAEEV----KNPER-DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVG 270 (429)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHH
Confidence 78888999999999999999999996 99965 6789999999999999998765433222111 11 1 111
Q ss_pred cccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhh--------cCCCCCchhhhhhHHHHHHHHHHHHHhcc
Q 017162 230 MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFVGVTFP 301 (376)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~lA~~vp 301 (376)
.... .++...+..+...+..+.+.--......+.+...-..+ .+.+.+...+-..-.. ..+.++ ....
T Consensus 271 ~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~~~-~~~~ 346 (429)
T TIGR00909 271 YDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAALL-ASLV 346 (429)
T ss_pred HHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHHHH-HHHc
Confidence 2222 23444455566666666665544444444444332111 0111111222111111 111111 2235
Q ss_pred cchhhhhhhhcccchhhHHhhhHHHHHHHhCC
Q 017162 302 FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 333 (376)
Q Consensus 302 ~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 333 (376)
+++.+.++.+- +..+.|++.++..++.+|+
T Consensus 347 ~~~~l~~~~~~--~~~~~y~~~~~a~~~lr~~ 376 (429)
T TIGR00909 347 PLEGLAELTSI--GTLIAFAAVNVAVIILRRR 376 (429)
T ss_pred CHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 67777765432 3356677766666665543
No 19
>PRK10746 putative transport protein YifK; Provisional
Probab=98.70 E-value=5.2e-06 Score=81.53 Aligned_cols=313 Identities=12% Similarity=0.056 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCC
Q 017162 5 ISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK 84 (376)
Q Consensus 5 ~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~ 84 (376)
+.+++......-+.|.....|... ++.+-+++.+||++| ..+.....+.......+.....+..++. +.+
T Consensus 51 i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~----~~p--- 120 (461)
T PRK10746 51 IAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRYMSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQF----WFP--- 120 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccC---
Confidence 455555656666677665667544 778889999999775 4445544444444444444433333332 211
Q ss_pred CcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH----HHHHHHHHHhh-hccccccc---c-cccccCCCcchhH
Q 017162 85 PLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMS----LSYSTIAWAGS-LSHGRIEN---V-SYAYKHTSSADYM 155 (376)
Q Consensus 85 ~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~----~~~~~i~~~~~-~~~~~~~~---~-~~~~~~~~~~~~~ 155 (376)
+.+...+..+...+. -....+..+..+.+........ +..+++.+... ...+...+ . ++..++...+..+
T Consensus 121 ~~~~~~~~~~~~~~~-~~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~ 199 (461)
T PRK10746 121 EMAQWIPALIAVALV-ALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGW 199 (461)
T ss_pred CCchHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccH
Confidence 122233322222211 1122233344333332211111 11111111100 11111100 0 1110000112346
Q ss_pred HHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCC----chhhh--
Q 017162 156 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV----DDNVL-- 229 (376)
Q Consensus 156 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~----~~~il-- 229 (376)
.++..++....|+|.+-..+...-.|. |||+| +++|++..+.....++|....+.-......+. +++..
T Consensus 200 ~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~ 274 (461)
T PRK10746 200 KGFLTALCIVVASYQGVELIGITAGEA----KNPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLT 274 (461)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHH
Confidence 788899999999999988888888885 99976 78999887777777777754332222222211 11211
Q ss_pred -cccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhc-------CCCCCchhhhhh-HHHHHHHHHHHHHhc
Q 017162 230 -MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-------NFPPGAAVRVVA-RSAYVAFTLFVGVTF 300 (376)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~lA~~v 300 (376)
.+... .....+.+....+..+.+.--..+...+.+...-..+. .++++...+-.. ......+...+....
T Consensus 275 ~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~ 353 (461)
T PRK10746 275 FAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYII 353 (461)
T ss_pred HHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 12211 12233445555555555543334444444443322110 011222222221 111222233344445
Q ss_pred ccchhhhhhhhccc--chhhHHhhhHHHHHHHhCCC
Q 017162 301 PFFGDLLGFFGGFG--FTPTSYFLPSIMWLVIKKPK 334 (376)
Q Consensus 301 p~~~~v~~l~Ga~~--~~~l~~ilP~l~~l~~~~~~ 334 (376)
|+-+.+++..-+.+ +..+.++.+++.|++.||++
T Consensus 354 ~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~ 389 (461)
T PRK10746 354 PNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAH 389 (461)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66555555444333 24788888998888887653
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.67 E-value=8.7e-06 Score=79.65 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=48.9
Q ss_pred hHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcce
Q 017162 154 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 215 (376)
Q Consensus 154 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~ 215 (376)
.+.++..++....|+|.+-......-.|+ |||+| +.+|++..+..++.++|.+..+.
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPrai~~s~~i~~v~Y~l~~~~ 245 (445)
T PRK10644 189 TFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIGGVLIAAVCYVLSSTA 245 (445)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHHHHHHHHHHHHHHHHHHHH
Confidence 45677778889999999988888888886 99977 68999999999999999877665
No 21
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.60 E-value=5.1e-06 Score=78.51 Aligned_cols=311 Identities=13% Similarity=0.096 Sum_probs=170.4
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
+++|.+.+.=++.|.|....+|..+ |+.|.+++.+||+ ...+....-.......+.+-...++..++..+++
T Consensus 53 ~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~~~lG~~-Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~----- 124 (462)
T COG1113 53 LIAGIFVFLIMRALGEMLVANPVSG--SFSDYARKYLGPW-AGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD----- 124 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 3577788888888888766666555 9999999999985 4455566666666666667777777666655432
Q ss_pred CCcchhHHHHHHHH--HHHHhhcCCCCcchhHHHHHHHHHHHH-HHHHHH--Hhhhccccc--ccccccc-cCCCcchhH
Q 017162 84 KPLRQTFWILIFGS--LHFFLSQLPDINSVSSVSLAAAVMSLS-YSTIAW--AGSLSHGRI--ENVSYAY-KHTSSADYM 155 (376)
Q Consensus 84 ~~~~~~~~~~i~~~--~~~pl~~~~~l~~l~~~s~~~~~~~~~-~~~i~~--~~~~~~~~~--~~~~~~~-~~~~~~~~~ 155 (376)
.+++.+.++... ...=+..+|...++.+.-.+--+..+. .+++.. +.....+.. .+.+.-. ++.--+..+
T Consensus 125 --vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~ 202 (462)
T COG1113 125 --VPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGF 202 (462)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCch
Confidence 344444443333 233356678887776654322222222 111111 111111111 1111101 111124567
Q ss_pred HHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHH-----HHHHHHhhhcceeecccCCCCch--hh
Q 017162 156 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYF-----VNAICYFPVALIGYWAFGQDVDD--NV 228 (376)
Q Consensus 156 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~-----~~~~~Y~~~g~~gy~~fg~~~~~--~i 228 (376)
.+++.++-..+|||++...+---..|- |||+| .++|+..--.. =...+.++..+.-+-.++++.++ .+
T Consensus 203 ~g~~~~~~~v~Faf~GiElvGitA~Et----~dP~k-~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~ 277 (462)
T COG1113 203 LGFLSALQIVMFAFGGIELVGITAAEA----KDPEK-AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTV 277 (462)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhh----cChhh-HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHH
Confidence 899999999999999988887777774 99987 46666543322 23334456667666666664443 22
Q ss_pred hcccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhc------C-CCCCc-hhhhhhHHHHHHHHHHHHHhc
Q 017162 229 LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM------N-FPPGA-AVRVVARSAYVAFTLFVGVTF 300 (376)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~------~-~~~~~-~~~~~~~~~~~~~~~~lA~~v 300 (376)
...+.- .+...+.|.........+.---.+...+++..+-.+.. + .+++- ..-+..+.+...+..++....
T Consensus 278 f~~iGi-~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~ 356 (462)
T COG1113 278 FSLIGI-PFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYIL 356 (462)
T ss_pred HHHcCC-cccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 222221 12223344433333333433334455555555532211 0 11121 233556667777888888888
Q ss_pred cc--chhhhhhhhcccchhhHHhhhHHHHHHHhC
Q 017162 301 PF--FGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 332 (376)
Q Consensus 301 p~--~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~ 332 (376)
|. |+.+.+..+.. ......+=.+.|+|.||
T Consensus 357 P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 357 PEKVFELVTSSSGLG--LLFVWLMILLSQLKLRK 388 (462)
T ss_pred chhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 93 44444443332 23344445677888777
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.60 E-value=1.1e-05 Score=79.55 Aligned_cols=197 Identities=14% Similarity=0.065 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHhCcccCCC-cccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCC
Q 017162 6 SWVTTLNTMWQMINLHECVPG-VRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK 84 (376)
Q Consensus 6 ~~~~~~~t~~ll~~~~~~~~~-~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~ 84 (376)
.++..........|...+.|+ .. ..-+..++.+||++| +...............++.....+.+..+.+... .
T Consensus 50 ~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-~-- 123 (473)
T TIGR00905 50 TGVGMLALAFVFAILATKKPELDG--GIYAYAREGFGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-S-- 123 (473)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhHcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-C--
Confidence 344444445555565555665 32 344566889998654 4445554444444445555555555555544221 0
Q ss_pred CcchhHHHHHHHHH--HHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhh--cccccccccccccCCC-cchhHHHHH
Q 017162 85 PLRQTFWILIFGSL--HFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSL--SHGRIENVSYAYKHTS-SADYMFRVF 159 (376)
Q Consensus 85 ~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (376)
..+....++..++ ..-....+..+...+++.......+...++..+... .+......+......+ ....+.++.
T Consensus 124 -~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 202 (473)
T TIGR00905 124 -GNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVK 202 (473)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHH
Confidence 1112212222222 222334456666666666555443322221111111 1111100011111011 112456788
Q ss_pred hHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcce
Q 017162 160 NALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 215 (376)
Q Consensus 160 ~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~ 215 (376)
.++....|+|.+-......-+|+ || +++.+|++..+..++.++|......
T Consensus 203 ~~~~~~~~af~G~e~~~~~a~E~----k~--~r~iPrai~~~~~i~~~~Yil~~~~ 252 (473)
T TIGR00905 203 NTMLVTLWVFIGIEGAVVSSGRA----KN--KSDVGKATVLGTLGALVIYILITLL 252 (473)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH----hc--cccchHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988888888886 78 4477899999999999999877654
No 23
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.59 E-value=3.5e-06 Score=82.45 Aligned_cols=55 Identities=20% Similarity=0.407 Sum_probs=47.9
Q ss_pred HHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc
Q 017162 155 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 214 (376)
Q Consensus 155 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 214 (376)
+.++..++....|+|.+-......-+|+ |||+| +++|++..+..++.++|.....
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iP~Ai~~~~~i~~~~Y~l~~~ 248 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEI----KNPGK-TMPRALIGSCLLVLVLYTLLAL 248 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-cchHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999988888888886 99976 7889999999999999987655
No 24
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.56 E-value=1.6e-05 Score=77.53 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=51.0
Q ss_pred hhHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceee
Q 017162 153 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGY 217 (376)
Q Consensus 153 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy 217 (376)
..+.++..++....|+|.+-......-+|+ |||+| +.+|++..+...+.++|....+...
T Consensus 184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iPrAi~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 184 TDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVPLATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999988888888886 99976 6889999999999999997776543
No 25
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.55 E-value=2e-05 Score=77.07 Aligned_cols=188 Identities=13% Similarity=0.107 Sum_probs=99.8
Q ss_pred HHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhH
Q 017162 11 LNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTF 90 (376)
Q Consensus 11 ~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~ 90 (376)
......+.|...+.|+.. ..-.-+++.+||.+ .++..............++....++.++...+. .....
T Consensus 54 ~~~a~~~aEl~s~~P~~G--g~y~~~~~~~G~~~-gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------~~~~~ 123 (442)
T TIGR00908 54 LTFCFSLAELSTMIPTAG--GGYGFARRAFGPWG-GFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------GPGWL 123 (442)
T ss_pred HHHHHHHHHHHHHcCCCC--CHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CchhH
Confidence 333444556555566533 45567788999865 455556655555555566666666666554422 11122
Q ss_pred HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccccc-ccccccCC--CcchhHHHHHhHhhHHHH
Q 017162 91 WILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIEN-VSYAYKHT--SSADYMFRVFNALGQISF 167 (376)
Q Consensus 91 ~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~f 167 (376)
+..+. ..++-....+..+..++++.......+....+.......+....+ .+.+..+. ..+..+.++..++....|
T Consensus 124 ~~~~~-~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (442)
T TIGR00908 124 AALVF-YIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIW 202 (442)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHH
Confidence 22111 111112233345555555443333222211111111111100000 00000000 112234577888888999
Q ss_pred hcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc
Q 017162 168 AFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 214 (376)
Q Consensus 168 af~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 214 (376)
+|.+.......-+|+ |||+| +.+|++..+..++.++|...-.
T Consensus 203 af~G~e~~~~~aeE~----k~P~r-~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 203 FFLAVEGVAMAAEET----KNPKR-DIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHHHHh----cCccc-ccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886 99977 6789999998888888876533
No 26
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.54 E-value=2.4e-05 Score=77.02 Aligned_cols=314 Identities=14% Similarity=0.109 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCC
Q 017162 5 ISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK 84 (376)
Q Consensus 5 ~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~ 84 (376)
+.++..........|...+.|+.. ...-+-+++.+||.+| ++..............++.....+.++...+... .
T Consensus 43 i~~~~~~~~al~~aeL~s~~P~~g-GG~y~y~~~~fG~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~ 117 (468)
T TIGR03810 43 ITGVGMLALAFSFQNLANKKPELD-GGVYSYAKAGFGPFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG---G 117 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCC-CChhhhHHhHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---C
Confidence 344444444555555555555421 0234448889998654 4444444443333334444443333333322211 0
Q ss_pred CcchhHHHH-HHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhh--hccccccccc-cccc--CCCcchhHHHH
Q 017162 85 PLRQTFWIL-IFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGS--LSHGRIENVS-YAYK--HTSSADYMFRV 158 (376)
Q Consensus 85 ~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~--~~~~~~~~~~-~~~~--~~~~~~~~~~~ 158 (376)
+.+...+.+ +..+..+-....+..+..+.++.......+...+...+.. ..++.....+ ++.. ..+....+.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (468)
T TIGR03810 118 GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQV 197 (468)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHH
Confidence 111111111 1111222222345666666666555443322111111111 1111110000 1100 00111234567
Q ss_pred HhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCC----Cchh----hhc
Q 017162 159 FNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD----VDDN----VLM 230 (376)
Q Consensus 159 ~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~----~~~~----il~ 230 (376)
..++....|+|.+-......-.|. ||+ ++.+|++..+.....++|....+..+...+++ .+++ ..+
T Consensus 198 ~~~~~~~~~~f~G~e~~~~~a~e~----k~~--k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~ 271 (468)
T TIGR03810 198 KNMMLVTVWVFIGIEGASMLSARA----EKR--SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLE 271 (468)
T ss_pred HHHHHHHHHHHHhHhHHhhhHhhc----cCc--ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHH
Confidence 788889999999988877777774 663 46779999999999999998776544333211 1111 222
Q ss_pred ccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHH---------hhhcCCCCCchhhhhhHHHHHHHHHHHHHhc-
Q 017162 231 ALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMM---------IKRMNFPPGAAVRVVARSAYVAFTLFVGVTF- 300 (376)
Q Consensus 231 ~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~v- 300 (376)
+.-. .+...+..+...+..+.+.--......+.....- .+. + +++...+-..-...+.....+....
T Consensus 272 ~~~g-~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~-~-~~~tP~~al~~~~~i~~~~~l~~~~~ 348 (468)
T TIGR03810 272 HMVG-TWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKE-N-ANGAPTNALWLTNGLIQIFLLTTLFS 348 (468)
T ss_pred HHcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhh-C-CCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 2222 3444555566666666655444443333333222 111 1 2222233222221111111111112
Q ss_pred -ccchhhhhhhhcccchhhHHhhhHHHHHHHhCCC
Q 017162 301 -PFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 334 (376)
Q Consensus 301 -p~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~ 334 (376)
+.++.+.++.+. ...+.|.++++.+++.++++
T Consensus 349 ~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 349 EQAYNFAISLATS--AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 235555555333 45788999999988886543
No 27
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.50 E-value=6.8e-06 Score=79.90 Aligned_cols=304 Identities=15% Similarity=0.124 Sum_probs=152.4
Q ss_pred HHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHH
Q 017162 13 TMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWI 92 (376)
Q Consensus 13 t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (376)
......|...+.|+.. ..-+-.++.+||++| .+..............++.....+.+...+.... .+ ++....
T Consensus 47 ~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~ 119 (426)
T PF13520_consen 47 IALSYAELSSAYPSAG--GIYVWVSRAFGPFWG-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDL---NP-SPWPQF 119 (426)
T ss_dssp HHHHHHHHHTTTTSST--THHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG---TC-SHHHHH
T ss_pred HHHHHHHHhccCCCcC--eeeehhhhcccccch-hcccceeEEEeeccccccccchhhhhhhcccccc---cc-ccchhe
Confidence 3444445444455433 566788889998765 4445555555555555555555555544332100 01 112222
Q ss_pred HHH--HHHHHHhhcCCCCcchhHHHHHHHHHHHH-HHHHHHHhhhccccccccc---ccccCCCcchhHHHHHhHhhHHH
Q 017162 93 LIF--GSLHFFLSQLPDINSVSSVSLAAAVMSLS-YSTIAWAGSLSHGRIENVS---YAYKHTSSADYMFRVFNALGQIS 166 (376)
Q Consensus 93 ~i~--~~~~~pl~~~~~l~~l~~~s~~~~~~~~~-~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 166 (376)
++. .+...-....+..|..++++.......+. ..++..+........+..+ .+.+ ...+..+.....+++...
T Consensus 120 ~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 198 (426)
T PF13520_consen 120 LIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLS-TFFPSGWPGFLAGFSVAF 198 (426)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHS-CSSCSSSSHHHHHHHHHG
T ss_pred eeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeeccccccccccccc-ccCCccccchhhHHHHHH
Confidence 222 22222333445677777777666655542 2222222222221111111 0010 011112234788899999
Q ss_pred HhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCc---hhh-------hcccCCch
Q 017162 167 FAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD---DNV-------LMALKRPG 236 (376)
Q Consensus 167 faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~---~~i-------l~~~~~~~ 236 (376)
|+|.+-......-+|+ || ++.+|++..+..++.++|......-....+++.. ++. .+... ..
T Consensus 199 ~~~~G~e~~~~~~~E~----k~---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 270 (426)
T PF13520_consen 199 FAFSGFEAIASLAEEN----KN---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GS 270 (426)
T ss_dssp GGGTTTTHHHHGGGGS----SS---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CC
T ss_pred hhcccccccccccccc----cc---hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-cc
Confidence 9999999999999985 55 3677999999999999999886655555443221 121 11111 12
Q ss_pred HHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhc---CC-CCCchhhhhhHH--HHHHHHHHHHH---hcc--cchh
Q 017162 237 WLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM---NF-PPGAAVRVVARS--AYVAFTLFVGV---TFP--FFGD 305 (376)
Q Consensus 237 ~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~---~~-~~~~~~~~~~~~--~~~~~~~~lA~---~vp--~~~~ 305 (376)
+...+..+...+..+.+.........+.+..+-.++. .. +.+ +.+.-.+. ....++.++.. ..| +++.
T Consensus 271 ~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~ 349 (426)
T PF13520_consen 271 WLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDI 349 (426)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHH
T ss_pred ccccccccccccccccccchhhcchhhcccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHH
Confidence 4555566666667777666666666566655543221 00 111 12222222 22222222221 224 3444
Q ss_pred hhhhhhcccchhhHHhhhHHHHHHHhCCCC
Q 017162 306 LLGFFGGFGFTPTSYFLPSIMWLVIKKPKR 335 (376)
Q Consensus 306 v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~ 335 (376)
+.+. +.......++++.+..++.+++++
T Consensus 350 l~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 377 (426)
T PF13520_consen 350 LVSL--SSVGYLISYILVILAVLFLRRKRP 377 (426)
T ss_dssp HHHH--HHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHhhhcC
Confidence 4443 233456677777777777665543
No 28
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.45 E-value=3.3e-05 Score=75.56 Aligned_cols=310 Identities=12% Similarity=0.068 Sum_probs=147.8
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
++.+++.......+.|...+.|+.. ..-+-+++.+||.+| ..+...................+..++ .+.+
T Consensus 32 ~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~----~~~~-- 102 (446)
T PRK10197 32 LFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAG-YTIGWLYWWFWVLVIPLEANIAAMILH----SWVP-- 102 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----hccc--
Confidence 3455666666666667665666543 667778899998654 444444443333222222222222222 1111
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhh--cccccc-ccccc----cc-CCCcchhH
Q 017162 84 KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSL--SHGRIE-NVSYA----YK-HTSSADYM 155 (376)
Q Consensus 84 ~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~--~~~~~~-~~~~~----~~-~~~~~~~~ 155 (376)
..+...+..+...+ +-+...+..+..+.+........+...+..++... ..+..+ ....+ .+ +...+..+
T Consensus 103 -~~~~~~~~~~~l~~-~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~ 180 (446)
T PRK10197 103 -GIPIWLFSLVITLA-LTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGF 180 (446)
T ss_pred -cCcHHHHHHHHHHH-HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccH
Confidence 12222222221111 11222334555555444443322221111111111 111110 00000 00 00012345
Q ss_pred HHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcce--eecccCCC---Cch---h
Q 017162 156 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI--GYWAFGQD---VDD---N 227 (376)
Q Consensus 156 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~--gy~~fg~~---~~~---~ 227 (376)
.++..++....|+|.+-......-.|+ |||+| +++|++..+.....++|....+. +...+++. ..+ .
T Consensus 181 ~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~ 255 (446)
T PRK10197 181 GAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRS 255 (446)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHH
Confidence 689999999999999999999999986 99976 78899888888888888864443 22222211 011 1
Q ss_pred hhcccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhc-------CCCCCchhhhhhHHH-HHHHHHHHHHh
Q 017162 228 VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-------NFPPGAAVRVVARSA-YVAFTLFVGVT 299 (376)
Q Consensus 228 il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~lA~~ 299 (376)
..+.... .+...+.+....+..+.+..-......+.+...-..+. ..+++...+-..-.. +..+..+....
T Consensus 256 ~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~ 334 (446)
T PRK10197 256 VLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYY 334 (446)
T ss_pred HHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 2233322 23444555555555555554444444444443322110 011222222222221 11222222222
Q ss_pred cc--cchhhhhhhhcccchhhHHhhhHHHHHHHhC
Q 017162 300 FP--FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 332 (376)
Q Consensus 300 vp--~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~ 332 (376)
.| .++.++++.+... .+.|.++.+.+++.||
T Consensus 335 ~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 335 APAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred ChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 23 3666777665554 4788888888888765
No 29
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.44 E-value=3.1e-05 Score=77.77 Aligned_cols=316 Identities=11% Similarity=0.035 Sum_probs=155.8
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc--
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS-- 81 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~-- 81 (376)
++.++.+........|...+.|+.. +.-.-.++.+|+.+ .+++.....+.......+.....++.+..++....+
T Consensus 69 liagv~~l~~al~yaElas~~P~sG--g~Y~y~~~~~G~~~-gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~ 145 (557)
T TIGR00906 69 LISGLAAVLSGFCYAEFGARVPKAG--SAYLYSYVTVGELW-AFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQF 145 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3455555555666666555566432 22223345688754 455566555554444444444445555554432110
Q ss_pred --C-----CCCcchh-HHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccc----cccCC
Q 017162 82 --H-----CKPLRQT-FWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSY----AYKHT 149 (376)
Q Consensus 82 --~-----~~~~~~~-~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~ 149 (376)
. .+..... ....+..+.++-....+..+..++++.+.....+...++..+.+......++... +.++.
T Consensus 146 ~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f 225 (557)
T TIGR00906 146 RRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGF 225 (557)
T ss_pred ccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCC
Confidence 0 0011111 1111222222223344677888877776665544333332222222221111110 00011
Q ss_pred CcchhHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCC---Cch
Q 017162 150 SSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD---VDD 226 (376)
Q Consensus 150 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~---~~~ 226 (376)
.+..+.+++.+.....|+|.+-..+...-.|. |||+| +++|++..+..++.++|..+.+.-...-+.+ .++
T Consensus 226 -~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~----knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~ 299 (557)
T TIGR00906 226 -MPYGFTGVLSGAATCFFAFIGFDAIATTGEEV----KNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDA 299 (557)
T ss_pred -CCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc----cCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCc
Confidence 12245688899999999999988888888885 99977 7899999999999999997664322222111 112
Q ss_pred hhhccc--CCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhh--------cCCCCCchhhhhhHHHHHHHHHHH
Q 017162 227 NVLMAL--KRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR--------MNFPPGAAVRVVARSAYVAFTLFV 296 (376)
Q Consensus 227 ~il~~~--~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l 296 (376)
+....+ ...++...+..+......+.+....+....+.+..+-..+ .+.+.+...+-. .....++.++
T Consensus 300 p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ai--l~~~iv~~il 377 (557)
T TIGR00906 300 PFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINAT--VVSGAIAALM 377 (557)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHH--HHHHHHHHHH
Confidence 221111 1223444444444454554444333444444443332111 011111122211 2222233333
Q ss_pred HHhcccchhhhhhhhcccchhhHHhhhHHHHHHHhCC
Q 017162 297 GVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 333 (376)
Q Consensus 297 A~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 333 (376)
+.. .+++.+.++. ..+..+.|.++++..+..|++
T Consensus 378 ~~~-~~~~~l~~l~--sig~ll~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 378 AFL-FDLKALVDLL--SIGTLLAYSLVAACVLILRYQ 411 (557)
T ss_pred HHH-cCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcc
Confidence 333 3566666654 234578999998888777743
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.44 E-value=6.8e-05 Score=73.62 Aligned_cols=310 Identities=14% Similarity=0.138 Sum_probs=144.3
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
++.++.......-+.|...+.|... ++-+-+++.+||. ..++......+.......+.....++.++... +
T Consensus 52 ~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~~~~g~~-~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~----p-- 122 (456)
T PRK10238 52 AIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAYKYWGSF-AGFASGWNYWVLYVLVAMAELTAVGKYIQFWY----P-- 122 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C--
Confidence 3455555555555666655566543 6666778899985 45566666666655555555555555554332 1
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHH---H-HHHhhhc-ccccc-ccc--ccccCCCcchhH
Q 017162 84 KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYST---I-AWAGSLS-HGRIE-NVS--YAYKHTSSADYM 155 (376)
Q Consensus 84 ~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~---i-~~~~~~~-~~~~~-~~~--~~~~~~~~~~~~ 155 (376)
+.+...+..+...+. -.......+....++.......+...+ + .+..... .+.+. ..+ ++..++ .+..+
T Consensus 123 -~~~~~~~~~i~~~~~-~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 199 (456)
T PRK10238 123 -EIPTWVSAAVFFVVI-NAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGF-LPHGF 199 (456)
T ss_pred -cCcHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCC-ccccH
Confidence 122222322222211 112222344444444433332221111 1 1111011 11110 000 011111 12235
Q ss_pred HHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc--eeecccCCC--Cchhh---
Q 017162 156 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL--IGYWAFGQD--VDDNV--- 228 (376)
Q Consensus 156 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~--~gy~~fg~~--~~~~i--- 228 (376)
.++..+++...|+|.+-......-.|+ |||+| +++|++..+.....+.|...-. .+...+.+- .+++.
T Consensus 200 ~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r-~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~ 274 (456)
T PRK10238 200 TGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ-SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLI 274 (456)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHH
Confidence 677788889999999988888888885 99976 6889987666666666654221 111222211 11222
Q ss_pred hcccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhc-------CCCCCchhhhhhHHHHHH-HHHHHHHhc
Q 017162 229 LMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-------NFPPGAAVRVVARSAYVA-FTLFVGVTF 300 (376)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~lA~~v 300 (376)
+.+... .+...+.+....+..+.+..-..+...+.+...-..+. ..+++...+-+.....+. +..++....
T Consensus 275 ~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~ 353 (456)
T PRK10238 275 FHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLA 353 (456)
T ss_pred HHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 222222 23333344444444444443333333333333221100 012222333222222222 222221122
Q ss_pred cc--chhhhhhhhcccchhhHHhhhHHHHHHHhCC
Q 017162 301 PF--FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 333 (376)
Q Consensus 301 p~--~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 333 (376)
|+ ++.+.++. ..+..+.|.+|.+.+++.+|+
T Consensus 354 ~~~~f~~l~~~~--~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 354 PESAFGLLMALV--VSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 32 45555553 334578999999999998764
No 31
>PRK10249 phenylalanine transporter; Provisional
Probab=98.44 E-value=6e-05 Score=74.04 Aligned_cols=194 Identities=14% Similarity=0.093 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
++.+++......-+.|...+.|... ...+.+++.+||.+| +++.....+.......+.....+..++. +.+
T Consensus 61 li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~~~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~----~~~-- 131 (458)
T PRK10249 61 GVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYKYWGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQY----WFP-- 131 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCC--
Confidence 4456666666666777666666543 677788999998654 4445544444333333333322333222 111
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHH---HHHHHHHHhhhccccc-cccccc--ccCC-CcchhHH
Q 017162 84 KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSL---SYSTIAWAGSLSHGRI-ENVSYA--YKHT-SSADYMF 156 (376)
Q Consensus 84 ~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~---~~~~i~~~~~~~~~~~-~~~~~~--~~~~-~~~~~~~ 156 (376)
+.+...+..+. ..+.-....+..+..+.+.......-+ ...++........+.+ +..+.+ .++. ..+..+.
T Consensus 132 -~~~~~~~~~~~-~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 209 (458)
T PRK10249 132 -DVPTWIWAAAF-FIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWN 209 (458)
T ss_pred -cCcHHHHHHHH-HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHH
Confidence 12222222111 112222233445544444333222111 1111110100111111 111110 0000 0123466
Q ss_pred HHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhc
Q 017162 157 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVA 213 (376)
Q Consensus 157 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g 213 (376)
++..++....|+|.+-......-+|+ |||+| +++|++..+.....++|....
T Consensus 210 ~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k-~iPrai~~~~~~~~~~y~~~~ 261 (458)
T PRK10249 210 GLILSLAVIMFSFGGLELIGITAAEA----RDPEK-SIPKAVNQVVYRILLFYIGSL 261 (458)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999888888886 99987 789999999888888887643
No 32
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.42 E-value=6.7e-05 Score=73.59 Aligned_cols=195 Identities=12% Similarity=0.073 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
++.++........+.|...+.|... ...+.+++.+||.+ .++............+.+.....++.++... +
T Consensus 52 ~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~~~g~~~-gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~----~-- 122 (452)
T TIGR01773 52 LLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADDAIGRWA-GFTIGWLYWWFWVLVIPLEAIAAAGILQYWF----P-- 122 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C--
Confidence 3455555555666666655566543 66778899999865 3445555554444444444444444444332 1
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHH---HHHHHhhhcccccc-c-cccc-ccCCC--cchhH
Q 017162 84 KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYS---TIAWAGSLSHGRIE-N-VSYA-YKHTS--SADYM 155 (376)
Q Consensus 84 ~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~---~i~~~~~~~~~~~~-~-~~~~-~~~~~--~~~~~ 155 (376)
+.+...+.++ ...+.-....+..+..+.+........+... ++..........+. + .+.. ..+.. .+..+
T Consensus 123 -~~~~~~~~~~-~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 200 (452)
T TIGR01773 123 -DIPLWLFSLI-LTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGI 200 (452)
T ss_pred -cCcHHHHHHH-HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccH
Confidence 1222222111 1112222233455555555543333222111 11111001111111 0 0000 00001 12345
Q ss_pred HHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc
Q 017162 156 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 214 (376)
Q Consensus 156 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 214 (376)
.++..++....|+|.+-......-.|+ |||+| +.+|++..+......+|.....
T Consensus 201 ~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi~~~~~~~~~~y~l~~~ 254 (452)
T TIGR01773 201 GAVLLAILVTMFSFMGTEIVTIAAAES----SNPIK-SITRATNSVIWRIIVFYLGSIF 254 (452)
T ss_pred HHHHHHHHHHHHHhccHHHHhHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999986 99976 6889988777777778876544
No 33
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.41 E-value=7.1e-05 Score=73.74 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=46.3
Q ss_pred hHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcce
Q 017162 154 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 215 (376)
Q Consensus 154 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~ 215 (376)
.+.++..++....|+|.+-......-+|+ |||+| +.+|++..+.....++|......
T Consensus 209 g~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~~~~~y~l~~~~ 265 (469)
T PRK11049 209 GLSGFFAGFQIAVFAFVGIELVGTTAAET----KDPEK-SLPRAINSIPIRIIMFYVFALIV 265 (469)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cCHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999986 99976 68899977776777777755543
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.39 E-value=0.00015 Score=71.71 Aligned_cols=195 Identities=12% Similarity=0.118 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCC
Q 017162 5 ISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK 84 (376)
Q Consensus 5 ~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~ 84 (376)
+.+++......-+.|.....|+. ...|.+.+++.+||++| +++.....+.......+.....++.++.. .+
T Consensus 44 i~~~~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~~--- 114 (478)
T TIGR00913 44 IMGSIIYCVMQSLGEMATFYPVV-SGSFATYASRFVDPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYW----TD--- 114 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CC---
Confidence 34455555555566665556632 22788889999998765 44455554444444444444444444321 11
Q ss_pred CcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHH---HHHHHHHhhhcccccccc-----ccc-ccCCCcc---
Q 017162 85 PLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLS---YSTIAWAGSLSHGRIENV-----SYA-YKHTSSA--- 152 (376)
Q Consensus 85 ~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~---~~~i~~~~~~~~~~~~~~-----~~~-~~~~~~~--- 152 (376)
+.....|..+.. .+.-+...+..+..+.++.......+. ..++..+.....+.+.+. ++. ...+++.
T Consensus 115 ~~~~~~~~~~~~-~~~~~in~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (478)
T TIGR00913 115 KVNPAVWIAIFY-VFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIG 193 (478)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCcc
Confidence 222233332222 122223344566655555443322111 111111111111111100 000 0011111
Q ss_pred hhHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc
Q 017162 153 DYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 214 (376)
Q Consensus 153 ~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 214 (376)
..+.++..++....|+|.+-......-+|. |||+| +++|++..+.....++|....+
T Consensus 194 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 194 GRFKGVCSVFVTAAFSFGGTELVALTAGEA----ANPRK-SIPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred chHHHHHHHHHHHHhhhccHHHHHHHHHhh----cChhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 136778889999999999988888888886 99976 7899999999999999997654
No 35
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.38 E-value=7.4e-05 Score=71.79 Aligned_cols=319 Identities=16% Similarity=0.164 Sum_probs=168.8
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhh-HHHHHHHhccC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKC-LKKFVEMACSH 82 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~-l~~~~~~~~~~ 82 (376)
+++++++.-....-.|.-..-|+.. .+|.=+.+ +||+.+|-....+...+..-..+..+.+..++. +++.+ +.
T Consensus 54 v~~gi~s~~galcyaELGT~ipksG-gd~ayi~~-afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~f----p~ 127 (479)
T KOG1287|consen 54 VFCGIISIIGALCYAELGTSIPKSG-GDYAYISE-AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFF----PL 127 (479)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCC-cchhhHHH-HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccC----CC
Confidence 4566666666666666544444322 25555554 688765543333333333333434455555554 44333 32
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHH---HHHHHHHHHHhhhcc---cccccccccccCCCcchhHH
Q 017162 83 CKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM---SLSYSTIAWAGSLSH---GRIENVSYAYKHTSSADYMF 156 (376)
Q Consensus 83 ~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~---~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 156 (376)
| +.++..--.+...++..+.+. |....++.+.+-.+. -+..+.++.+.+.+. +..++.+... ......+..
T Consensus 128 c-~~p~~~~~lla~~~l~~lt~~-n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~-f~g~~~~~g 204 (479)
T KOG1287|consen 128 C-DVPRVASKLLAAALLVLLTLI-NSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE-FEGSDTDVG 204 (479)
T ss_pred C-CCchHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccc-cccCcCchH
Confidence 3 344444444555555554444 455555554433333 333333333333332 2122111110 111234556
Q ss_pred HHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeeccc--CCCCchhhhcc-cC
Q 017162 157 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAF--GQDVDDNVLMA-LK 233 (376)
Q Consensus 157 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~f--g~~~~~~il~~-~~ 233 (376)
+...++=.-.|+|.+=...=.+-.|+ |||+| ++++++..++.+++++|+++=+..+.+- .+-.++|.... +.
T Consensus 205 ~i~lafysglfa~~GWd~lN~vteEi----knP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa 279 (479)
T KOG1287|consen 205 NIALAFYSGLFAFSGWDYLNYVTEEI----KNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFA 279 (479)
T ss_pred HHHHHHHHhhhcccCchhhccchHhh----cCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHH
Confidence 78888889999999988888888886 99977 7899999999999999998765444333 22212211111 11
Q ss_pred ---CchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCC-----CCchhhhh-hHHHHHHHHHHHHHhcccch
Q 017162 234 ---RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFP-----PGAAVRVV-ARSAYVAFTLFVGVTFPFFG 304 (376)
Q Consensus 234 ---~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~lA~~vp~~~ 304 (376)
-+++. -..-++..++.+.+.--.++.....+...-.+. +.+ .+.+..-- ..........++...++|++
T Consensus 280 ~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG-~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~ 357 (479)
T KOG1287|consen 280 DRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREG-HLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFD 357 (479)
T ss_pred HHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHcc-CccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHH
Confidence 11222 234455555565555444444333333332211 110 01111111 11223333444444567899
Q ss_pred hhhhhhhcccchhhHHhhhHHHHHHHhCCCCCch
Q 017162 305 DLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSP 338 (376)
Q Consensus 305 ~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~ 338 (376)
++++..+=.-...+.+.+=+++++|.++++..|+
T Consensus 358 ~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 358 QLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 9999998777778888888999999888875553
No 36
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.37 E-value=0.00038 Score=68.86 Aligned_cols=199 Identities=12% Similarity=0.057 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHH---HHhhhhhHhhhchhhHHHHHHHhc
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIV---QVGCDIVYMVTGGKCLKKFVEMAC 80 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~---~~g~~~~y~i~~~~~l~~~~~~~~ 80 (376)
++.+++......-+.|...+.|+.. ..-.-+++++|+++|+..-.+.-..+ ....+.+.....++.+........
T Consensus 54 ~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (482)
T TIGR00907 54 IIAGAGSICIALSLAELSSAYPTSG--GQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTT 131 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555656666667665666543 55666778888877766544332333 333333333344444444332211
Q ss_pred cCC-CCcchhHHHHHHHH--HHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccc--ccccccc---cCCC-c
Q 017162 81 SHC-KPLRQTFWILIFGS--LHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRI--ENVSYAY---KHTS-S 151 (376)
Q Consensus 81 ~~~-~~~~~~~~~~i~~~--~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~---~~~~-~ 151 (376)
+.. ...++.....+..+ ...-+...+..|.++.+........+...+++.+.....+.+ .+.+... .+.. .
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g 211 (482)
T TIGR00907 132 PGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGG 211 (482)
T ss_pred CCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCC
Confidence 110 00111222222221 222222333444555555443332222111111111111111 1101100 0000 0
Q ss_pred -chhHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHH
Q 017162 152 -ADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICY 209 (376)
Q Consensus 152 -~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y 209 (376)
..+..++..++....|+|.+-......-+|+ |||+| +++|++..+..+..+++
T Consensus 212 ~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~r-~iP~Ai~~s~~i~~~~~ 265 (482)
T TIGR00907 212 WKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI----ENPEV-VGPRAIIGAVAIGIVTG 265 (482)
T ss_pred cCCCchhhhhhhhhhHHHhcCcchhhHHHHhc----CChhh-hcCHHHHHHHHHHHHHH
Confidence 1111245556666789999988888888886 99976 78899998877665543
No 37
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.37 E-value=5.3e-05 Score=74.69 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc
Q 017162 155 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 214 (376)
Q Consensus 155 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 214 (376)
..++..++....|+|.+-......-.|+ |||+| +++|++..+.....++|....+
T Consensus 205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~~~~~y~~~~~ 259 (471)
T PRK11387 205 GLPILMTMVAVNFAFSGTELIGIAAGET----ENPAK-VIPVAIRTTIARLVIFFVGTVL 259 (471)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999988888886 99976 7899999999888888887655
No 38
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.36 E-value=3.9e-05 Score=76.24 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=48.9
Q ss_pred hHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcce
Q 017162 154 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 215 (376)
Q Consensus 154 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~ 215 (376)
+..++..++....|+|.+-......-.|+ |||+| +.+|++..+...+.++|.+..+.
T Consensus 233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~r-~iPrAi~~s~~~v~~~Y~l~~~a 289 (501)
T TIGR00911 233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPYR-TLPIAIIISMPIVTFIYVLTNIA 289 (501)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999988888888886 99976 68899999999999999987543
No 39
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.35 E-value=0.0001 Score=77.96 Aligned_cols=203 Identities=13% Similarity=0.132 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHHHHHhCccc-CCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 3 LVISWVTTLNTMWQMINLHEC-VPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 3 l~~~~~~~~~t~~ll~~~~~~-~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
++++++++..|..-+.+.... .++.. ..|. ..++++|+.+| ..+.+.....+...+..|.+..++.+..+++....
T Consensus 117 ~~la~~vtlltaLS~seiaTng~p~aG-G~Y~-yisralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~ 193 (953)
T TIGR00930 117 ILLCCCVTTITGLSMSAIATNGVVKGG-GAYY-LISRSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS 193 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcc-HHHH-HHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 345566666666666665443 33221 2554 44567888765 44466666767777888888888888877654210
Q ss_pred C--CCCc-chhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccc-c---ccccc---c-C-C
Q 017162 82 H--CKPL-RQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIE-N---VSYAY---K-H-T 149 (376)
Q Consensus 82 ~--~~~~-~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~---~~~~~---~-~-~ 149 (376)
. ..+. +.+.+..+..+++..+ .....+...+++.+.++..++.++.+++..+...... . ..++. . . .
T Consensus 194 ~~~~~~~~~~~iia~i~l~ll~~I-n~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~ 272 (953)
T TIGR00930 194 KIMVDPINDIRIYGTVTVVVLLGI-SFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFI 272 (953)
T ss_pred ccccCccccchHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccC
Confidence 0 0011 1122222222222222 2335555555555444433322222222111111000 0 00000 0 0 0
Q ss_pred CcchhH-HHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc
Q 017162 150 SSADYM-FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 214 (376)
Q Consensus 150 ~~~~~~-~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 214 (376)
+...+. .++...++++.+||.+-.....+-.|+ |||+| +++|+...+..++.++|+++.+
T Consensus 273 p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl----KnP~r-~IPratl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 273 PGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL----KDPQK-AIPKGTLLAILTTTVVYLGSVV 333 (953)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc----cChhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 111111 237778888888998887777777776 99987 7899999999999999998875
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.33 E-value=1.5e-05 Score=75.75 Aligned_cols=298 Identities=12% Similarity=0.130 Sum_probs=148.7
Q ss_pred hhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccC
Q 017162 3 LVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSH 82 (376)
Q Consensus 3 l~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~ 82 (376)
.++.++........+.+...+.|++ +..|..++.+||..|+. .......+............+|.++.... +
T Consensus 40 ~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~- 111 (359)
T TIGR00912 40 IILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKILGRL-LSILFILYFFLIAAYLIRIFADFIKTYLL---P- 111 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C-
Confidence 3556677777778888877677753 78899999999855544 44544444444433333333444332211 1
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHH-HHHHHHhhhcccccccccccccCCCcchhHHHHHhH
Q 017162 83 CKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSY-STIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNA 161 (376)
Q Consensus 83 ~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (376)
+.+.. ...+..+...-....+.++....++.+.....+.. ..+.......+...++ ..+ . ...+..+...+
T Consensus 112 --~tp~~-~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~--l~P--~-~~~g~~~~~~~ 183 (359)
T TIGR00912 112 --RTPII-VIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAPKLGNIKN--LLP--V-LENGLSPILKG 183 (359)
T ss_pred --CCCHH-HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH--ccC--c-cccCcHHHHhh
Confidence 11211 11222222222233456777777766555443332 1121211111111111 100 0 01123344433
Q ss_pred h-hHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCch-------hhhcccC
Q 017162 162 L-GQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD-------NVLMALK 233 (376)
Q Consensus 162 ~-~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~-------~il~~~~ 233 (376)
. +...++|.+.........++ |||++ .+|+...+..++..+|...-......+|.+..+ +..+..+
T Consensus 184 ~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~ 257 (359)
T TIGR00912 184 AYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLIN 257 (359)
T ss_pred hhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhh
Confidence 3 36778887766666666664 77765 459999999999999997777666666654322 2222222
Q ss_pred CchHHHH---HHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhcccchhhhhhh
Q 017162 234 RPGWLIA---AANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFF 310 (376)
Q Consensus 234 ~~~~~~~---~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~l~ 310 (376)
-++.... +.-..-....+.+..+..+.....+++.++.+++ +....-.+. ..+.++ ..||-.+-....
T Consensus 258 ~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 328 (359)
T TIGR00912 258 IGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY------SILILPVLM--VIFSIS-FFPDSSNQLFDY 328 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc------chhHHHHHH--HHHHHH-HccchHHHHHHH
Confidence 1122111 1222334455556556667777777777754311 112222222 222222 256522222222
Q ss_pred h---cccchhhHHhhhHHHHHHHh
Q 017162 311 G---GFGFTPTSYFLPSIMWLVIK 331 (376)
Q Consensus 311 G---a~~~~~l~~ilP~l~~l~~~ 331 (376)
. ...+....+++|.++.+...
T Consensus 329 ~~~~~~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 329 LEFLPIIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 12335667788998766654
No 41
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.28 E-value=0.00018 Score=70.71 Aligned_cols=194 Identities=12% Similarity=0.134 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
++.++.......-+.|...+.|... ..-+-+++.+||.+| ++....................+..++. +.+
T Consensus 49 ~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~----~~~-- 119 (457)
T PRK10580 49 IIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQENLGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGV----WFP-- 119 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCC--
Confidence 4555666666666777665666433 445567888998654 4445544433322222222222333222 211
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHH-------Hhhhccc-ccccccccccC-CCcchh
Q 017162 84 KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAW-------AGSLSHG-RIENVSYAYKH-TSSADY 154 (376)
Q Consensus 84 ~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~-------~~~~~~~-~~~~~~~~~~~-~~~~~~ 154 (376)
+.+...+.+... ++.-....+..+....+........+...++.. ....... .+.+.+...++ ...+..
T Consensus 120 -~~~~~~~~~~~~-~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 197 (457)
T PRK10580 120 -TVPHWIWVLSVV-LIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNG 197 (457)
T ss_pred -CCChHHHHHHHH-HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcc
Confidence 122223322222 222223334555555554333222221111110 0011111 11111110110 011233
Q ss_pred HHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhc
Q 017162 155 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVA 213 (376)
Q Consensus 155 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g 213 (376)
+.++..++....|+|.+-......-+|+ |||+| +.+|++..+.....++|....
T Consensus 198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP~k-~iPrAi~~~~~~~~~~y~~~~ 251 (457)
T PRK10580 198 WLGMVMSLQMVMFAYGGIEIIGITAGEA----KDPEK-SIPRAINSVPMRILVFYVGTL 251 (457)
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 5578888999999999999999999986 99987 678988877766677776543
No 42
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.24 E-value=0.00015 Score=71.21 Aligned_cols=311 Identities=15% Similarity=0.187 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcc
Q 017162 8 VTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLR 87 (376)
Q Consensus 8 ~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~ 87 (376)
++.........|...+.|+.. .+-+-.++.+||++| +.+.............+......+.+....+... ....+
T Consensus 56 ~~~~~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 130 (466)
T COG0531 56 IIILFLALSYAELSSAIPSAG--GAYAYAKRALGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--LLSIG 130 (466)
T ss_pred HHHHHHHHHHHHHHhcCCCCC--CeeeehhhhcCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhcCC
Confidence 333333444455444445433 566778889998765 4455555555555555555555554444433210 00011
Q ss_pred hhHHHHHHHHHHHH--hhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhhHH
Q 017162 88 QTFWILIFGSLHFF--LSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQI 165 (376)
Q Consensus 88 ~~~~~~i~~~~~~p--l~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (376)
...+..+..+...- +...+..+...++........+...++..............+......+......++..+++..
T Consensus 131 ~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (466)
T COG0531 131 PLLIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLA 210 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHH
Confidence 12222222222222 2233556666666655555444332222222222211111000000000123445788999999
Q ss_pred HHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCC-Cc-----hhhhccc--CCchH
Q 017162 166 SFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-VD-----DNVLMAL--KRPGW 237 (376)
Q Consensus 166 ~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~-~~-----~~il~~~--~~~~~ 237 (376)
.++|.|-....+.-+|+ |||+| +.+|++..+...+.++|......-....+++ .. .+..... ..+.+
T Consensus 211 ~~~f~G~e~~~~~a~E~----knp~r-~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~ 285 (466)
T COG0531 211 FFAFTGFEAIATLAEEV----KNPKR-TIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNW 285 (466)
T ss_pred HHHhhcHHHHHHHHHHh----cCccc-cccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccH
Confidence 99999999988988886 99866 4789999999999999998777665555542 11 1111111 01124
Q ss_pred HHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhc---------CCCCCchhhhhhHHHHHHHHHHHHHhcc----cch
Q 017162 238 LIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM---------NFPPGAAVRVVARSAYVAFTLFVGVTFP----FFG 304 (376)
Q Consensus 238 ~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~lA~~vp----~~~ 304 (376)
...+..+...+..+.+.........+....+-. +. +.+.+...+-......+.. .+....+ .++
T Consensus 286 ~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ar-dg~lP~~~~~~~~~~~~P~~a~~~~~ii~~--~l~~~~~~~~~~~~ 362 (466)
T COG0531 286 GAIIIAILALLSLFGSLLAWILAVSRVLYAMAR-DGLLPKFFAKVNPKGRTPVIALILTGIISL--ILLLLFPLSSIAFN 362 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCccHHHHHhCCCCCCCHHHHHHHHHHHH--HHHHHhhccccHHH
Confidence 444555555555555543333322222222211 11 1111122222222222222 1222222 234
Q ss_pred hhhhhhhcccchhhHHhhhHHHHHHHhCC
Q 017162 305 DLLGFFGGFGFTPTSYFLPSIMWLVIKKP 333 (376)
Q Consensus 305 ~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 333 (376)
.+.++ +.....+.|.++.+..++.+++
T Consensus 363 ~l~~~--~~~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 363 ALVSL--ASVAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 44444 3445678899999888888765
No 43
>PRK10836 lysine transporter; Provisional
Probab=98.23 E-value=0.00032 Score=69.52 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=45.2
Q ss_pred hHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc
Q 017162 154 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 214 (376)
Q Consensus 154 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 214 (376)
.+.++..+.....|+|.+-..+...-.|. |||+| +++|++..+.....++|.....
T Consensus 203 g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~v~~~Yvl~~~ 258 (489)
T PRK10836 203 GFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPAK-NIPRAVRQVFWRILLFYVFAIL 258 (489)
T ss_pred cHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666779999988888888885 99976 7899999999999999996654
No 44
>PRK15049 L-asparagine permease; Provisional
Probab=98.22 E-value=0.00044 Score=68.66 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=91.0
Q ss_pred hHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCC-C---chhhh
Q 017162 154 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQD-V---DDNVL 229 (376)
Q Consensus 154 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~-~---~~~il 229 (376)
.+.+++.++....|+|.+-..+...-.|. |||+| +++|++..+.....++|+..........+.+ . .++..
T Consensus 218 g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~ 292 (499)
T PRK15049 218 GLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQT-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFV 292 (499)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHH
Confidence 34556667778999999988888888885 99977 6889998888777777775544322222211 1 12222
Q ss_pred ---cccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhc-------CCCCCchhhhhh-HHHHHHHHHHHHH
Q 017162 230 ---MALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-------NFPPGAAVRVVA-RSAYVAFTLFVGV 298 (376)
Q Consensus 230 ---~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~lA~ 298 (376)
.... ..+...+.++...+..+.+.--..+...+.+..+-..+. ..+++...+-+. ..++..+..++..
T Consensus 293 ~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~ 371 (499)
T PRK15049 293 TFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNY 371 (499)
T ss_pred HHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1121 123334455555555555543333433333333321110 012222222222 1222222222222
Q ss_pred hccc--chhhhhhhhcccchhhHHhhhHHHHHHHhCC
Q 017162 299 TFPF--FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 333 (376)
Q Consensus 299 ~vp~--~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 333 (376)
..|+ ++.++++. ..+..+.|++|.+.+++.||+
T Consensus 372 ~~~~~~f~~l~~~~--~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 372 LVPSRVFEIVLNFA--SLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred cChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 3332 44455553 345688899999999888753
No 45
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.19 E-value=0.0002 Score=71.27 Aligned_cols=51 Identities=8% Similarity=-0.064 Sum_probs=40.3
Q ss_pred HHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhc
Q 017162 158 VFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVA 213 (376)
Q Consensus 158 ~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g 213 (376)
....+..+.|+|.+-......-+|+ |||+| +++|++..+..+..++|....
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~----knP~r-~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINEL----ENPGR-DYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHc----cCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence 3445555689999988888888886 99976 688999999888888887633
No 46
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.17 E-value=0.0004 Score=68.55 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=39.4
Q ss_pred HHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcce
Q 017162 164 QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALI 215 (376)
Q Consensus 164 ~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~ 215 (376)
...++|.+-......-+|+ |||+| +.+|++..+...+.++|....+.
T Consensus 202 ~~~~af~G~e~~~~~a~E~----knP~r-~iPrAi~~~~~~~~~~y~l~~~~ 248 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDV----DNPDK-NYPIAILIAALGTVLIFVLGTLA 248 (474)
T ss_pred HHHHHHhchhHhHHHHHhc----cCccc-chhHHHHHHHHHHHHHHHHHHHH
Confidence 3578999998888888886 99977 78999999999999999865543
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.05 E-value=0.0046 Score=61.11 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=41.0
Q ss_pred HHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhc
Q 017162 156 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVA 213 (376)
Q Consensus 156 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g 213 (376)
..+..+.....|+|.+-......-+|+ |||+| +.+|++..+..+..+.|...-
T Consensus 213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~----knP~r-~iPrai~~s~~i~~~~~~~~~ 265 (475)
T TIGR03428 213 GAFLVSGLMAAYVMVGFGSAGELSEET----KNPRR-VAPRTILTALSVSALGGGLMI 265 (475)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHh----cCcch-hhhHHHHHHHHHHHHHHHHHH
Confidence 455566777889999988888888885 99977 789999998887766544433
No 48
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.94 E-value=0.00055 Score=62.15 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccC
Q 017162 3 LVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSH 82 (376)
Q Consensus 3 l~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~ 82 (376)
.++++++-..++..+.+...+- +..+|+|.-++.+||+++|. .|+.+....++.++.-.-..++.+++.+
T Consensus 42 Iivs~vlf~~~g~vim~ig~~f---~a~~y~~~~~~v~~~~~~ki-~d~~iif~lf~~~vVM~AGags~~~e~~------ 111 (349)
T COG3949 42 IILSTVLFTLSGAVIMTIGKKF---NATSYREILKYVSGPKFAKI-IDIIIIFFLFSTAVVMLAGAGSLLEEMF------ 111 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---cccchHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhccchhHHHHHh------
Confidence 3556667677777777765433 23499999999999988665 5999999999999999999888888654
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCCCCcchhHHH
Q 017162 83 CKPLRQTFWILIFGSLHFFLSQLPDINSVSSVS 115 (376)
Q Consensus 83 ~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 115 (376)
+.+.+.-.++....+..+.++++.+.+..+.
T Consensus 112 --~lP~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 112 --GLPYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred --CccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 2333333345555555556677677665554
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.79 E-value=0.0055 Score=60.87 Aligned_cols=54 Identities=24% Similarity=0.235 Sum_probs=45.6
Q ss_pred HHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc
Q 017162 156 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 214 (376)
Q Consensus 156 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 214 (376)
.++..++....|+|.+-......-+|+ |||+| +.+|++..+.....++|....+
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHH
Confidence 457777888999999999988888886 99976 7899999999999999987544
No 50
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.77 E-value=0.00042 Score=68.48 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=55.6
Q ss_pred hHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCC
Q 017162 154 YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV 224 (376)
Q Consensus 154 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 224 (376)
++.++..++....++|.+-......-.|. |||+| +++|+...+.....++|.......-...+.+.
T Consensus 198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k-~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 198 GFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK-TIPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred chhHHHHhhhhhhcccccccccccccccC----CCchh-hhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 47889999999999999988888888886 99977 78999999999999999987776655555443
No 51
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.75 E-value=0.0025 Score=62.31 Aligned_cols=189 Identities=13% Similarity=0.048 Sum_probs=106.0
Q ss_pred ccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcc------hhHHHHHHHHHHHHhh
Q 017162 30 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLR------QTFWILIFGSLHFFLS 103 (376)
Q Consensus 30 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~------~~~~~~i~~~~~~pl~ 103 (376)
.++.-++|..||.+ |..+..++..+...|-...-....++.+..+++...+.....+ .....++..++.+++.
T Consensus 76 l~~~v~sR~~FG~~-Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 76 LPFPVLSRASFGIY-GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred CCcchhhhhhhhhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 47889999999984 8888888888888888888888889888888776543211111 1223344555666655
Q ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhhHHHHh-cccceeeccccccC
Q 017162 104 QLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFA-FAGHAVALEIQATI 182 (376)
Q Consensus 104 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m 182 (376)
.....+-.++....+....+....+........+...+........++......+..++...+-. -..-++.++.-|.+
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~ 234 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG 234 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc
Confidence 55555555555555544322222211111111111111000100011122334555555553322 35556889999986
Q ss_pred CcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecc----cCCCCc
Q 017162 183 PSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWA----FGQDVD 225 (376)
Q Consensus 183 ~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~----fg~~~~ 225 (376)
|+|++.. +....++.........+|..+-.. +|+...
T Consensus 235 ----~~~~~~~--~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~ 275 (442)
T TIGR00800 235 ----KSKKTAI--WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYW 275 (442)
T ss_pred ----CCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 5555433 556667777777777777777655 765543
No 52
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.71 E-value=0.00092 Score=62.43 Aligned_cols=247 Identities=12% Similarity=0.121 Sum_probs=131.1
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
++.+.....-..+..+..++.|++ |..|..++.+||..|+. .........+...........|.++...-.
T Consensus 39 ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~lg~i-i~~~~~l~~l~~~~~~lr~~~~~i~~~~lp----- 109 (320)
T PF03845_consen 39 LLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWLGKI-INLLYILYFLLISALVLREFSEFIKTYLLP----- 109 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 344555555566666666666654 99999999999866554 455555555555555555555555543211
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhh
Q 017162 84 KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG 163 (376)
Q Consensus 84 ~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (376)
+.+.. ......+...-....+.++.+...+..-....+............+. |++.-......++.+...+..
T Consensus 110 -~TP~~-~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~-----~~~~l~P~~~~g~~~i~~~~~ 182 (320)
T PF03845_consen 110 -ETPIW-VIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLLSIPNI-----DWDNLLPVLESGIKPILKGSL 182 (320)
T ss_pred -cCCHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----CHHHeeCcccCChHHHHHHHH
Confidence 11222 22222222233334567777777554443333322222222222221 211100111234566777766
Q ss_pred HHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCch----h---hhcccCCch
Q 017162 164 QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDD----N---VLMALKRPG 236 (376)
Q Consensus 164 ~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~----~---il~~~~~~~ 236 (376)
...+.|.+-....-+...+ |||++.+ |....+...+.++|...-+.....||.+..+ + ..+..+-++
T Consensus 183 ~~~~~~~~~~~~l~~~p~~----~~~~~~~--k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~ 256 (320)
T PF03845_consen 183 VISFPFGGIEILLFLFPFV----KDKKKLK--KSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGD 256 (320)
T ss_pred HHHHHHHHHHHHHHHHHHc----CCchHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHH
Confidence 6677777666666666664 6666544 8888888888888887777667777754322 1 222221111
Q ss_pred HHHH---HHHHHHHHHHHHhhceeccchHHHHHHHHhhh
Q 017162 237 WLIA---AANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR 272 (376)
Q Consensus 237 ~~~~---~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~ 272 (376)
.... +.-.......+.+..+..+-..+.+.+.++.+
T Consensus 257 fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 257 FIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111 12223344455555566777778888887543
No 53
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.46 E-value=0.069 Score=51.22 Aligned_cols=219 Identities=14% Similarity=0.121 Sum_probs=116.3
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..++.-++|..||++ |..+..+...+...|--.......++.++.+.+...+. .+...+..+..++..+.+.. ..
T Consensus 57 Gl~~~v~sR~~FG~~-Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~-G~ 131 (386)
T TIGR02358 57 GLSAMGSLKLSLGSK-GSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE---ESPMLWILIVGILVTLWLLS-GP 131 (386)
T ss_pred CcCHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHHH-HH
Confidence 348899999999985 88888888888888888888888899999887654322 11233444555555555544 45
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhhHHH-HhcccceeeccccccCCcCCC
Q 017162 109 NSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQIS-FAFAGHAVALEIQATIPSTPE 187 (376)
Q Consensus 109 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~~m~~~m~ 187 (376)
+.++++...+........+...+....+....+ ..+. +. + ..+..+++... +.-..-+..++..|.. |
T Consensus 132 ~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~---~~--~-~s~~~~~~~~~~~~~swa~~~~DysRy~----k 200 (386)
T TIGR02358 132 LAFVWLNNWSVWLLLIATLWLLVVVFSKADLSE-LWNR---AG--D-MSFAVAVELVIAMPLSWLPLIADYTRFA----R 200 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh-hcCC---CC--C-ccHHHHHHHHHHHHHHHHHHccchhhhc----C
Confidence 666666666655443332222222222211111 1111 11 1 11222222211 1012223478888874 5
Q ss_pred CCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCchhhhcccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHH
Q 017162 188 KPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEG 267 (376)
Q Consensus 188 ~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 267 (376)
+|++ ..+....+..+...+...+|.....+.++....+++... +.. ...-+...+....+-....++..-.+..
T Consensus 201 ~~~~--~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~---g~~-~~~~~~~~l~~~~~n~~N~ys~~l~l~~ 274 (386)
T TIGR02358 201 NPRH--VFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGA---GLG-IPALLIILLSTVTTTFMDIYSAAISTGN 274 (386)
T ss_pred CCcc--eehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhc---cHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5543 235666677777777777777666665543222222222 111 1233344444444444455555555555
Q ss_pred HH
Q 017162 268 MM 269 (376)
Q Consensus 268 ~~ 269 (376)
..
T Consensus 275 l~ 276 (386)
T TIGR02358 275 LL 276 (386)
T ss_pred HH
Confidence 55
No 54
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=97.33 E-value=0.19 Score=49.30 Aligned_cols=312 Identities=13% Similarity=0.116 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
++++.+.+..+.-|.|.+...|... +|.+-+.+.-+|.+|-.+ ...-..+..-++-.-+...+..++ .+.++
T Consensus 85 ~i~G~~vy~vm~sLGEma~~~P~sG--sF~~ya~rfvdpa~GFa~-gWnYw~~w~v~~~~El~aa~~vi~----yW~p~- 156 (541)
T COG0833 85 LIIGIMVYFVMQSLGELAVFYPVSG--SFSTYATRFVDPAFGFAL-GWNYWLNWAVTLPLELTAASLVIQ----YWFPD- 156 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC--chhhhhhhhcCchHHHHH-HHHHHHHHHHHhhHHHHHHHHhhh----hhcCC-
Confidence 4567777778888888776667433 788888888887665322 222222211111122222222222 22111
Q ss_pred CCcchhHHHHHHHHHHHH--hhcCCCCcchhHHHHHHH-HHHHHHHHHHHHhhhccccc--cc--ccccccCCCcchhHH
Q 017162 84 KPLRQTFWILIFGSLHFF--LSQLPDINSVSSVSLAAA-VMSLSYSTIAWAGSLSHGRI--EN--VSYAYKHTSSADYMF 156 (376)
Q Consensus 84 ~~~~~~~~~~i~~~~~~p--l~~~~~l~~l~~~s~~~~-~~~~~~~~i~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~ 156 (376)
..+...|..++.++++. +.-+|...+..+.-..-- +.++.++++..+. ...+.+ .+ .++-.++..-...+.
T Consensus 157 -~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~-~~Gg~~~~~~ig~~yw~~pg~F~~gf~ 234 (541)
T COG0833 157 -TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIII-ICGGGPTHGYIGFNYWHDPGAFAGGFK 234 (541)
T ss_pred -CCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCcceeeecCCCCCCcchH
Confidence 24557777766555544 445688877666543332 2222222221111 111111 11 111111112234578
Q ss_pred HHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc-eeec-ccCC----------CC
Q 017162 157 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL-IGYW-AFGQ----------DV 224 (376)
Q Consensus 157 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~-~gy~-~fg~----------~~ 224 (376)
++...+-+..|+|.+...+---..| -+||+| .++|++.-...=..++|+..-+ .|.+ -|.| ..
T Consensus 235 g~~~v~v~a~Fsf~GtElvgiaAgE----s~nP~K-~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~ 309 (541)
T COG0833 235 GFCSVFVIAAFSFSGTELVGLAAGE----SENPRK-SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVA 309 (541)
T ss_pred HHHHHHhhheeeeeceeeeeeeecc----cCCchh-hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCcc
Confidence 8999999999999998888777777 499987 6788887666555566653221 2222 2222 11
Q ss_pred chhhhcccCCc--hHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcC-------CCCCchhhhhhHHHHHHHHHH
Q 017162 225 DDNVLMALKRP--GWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN-------FPPGAAVRVVARSAYVAFTLF 295 (376)
Q Consensus 225 ~~~il~~~~~~--~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 295 (376)
.++....+++. ..+-.+.|.....+++.+----++...+++..+-..++- .++++...-+..+.++.+...
T Consensus 310 ~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~laf 389 (541)
T COG0833 310 ASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAF 389 (541)
T ss_pred CCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 22333333221 122334555555555544434455556666666543321 123344443333333333333
Q ss_pred HHHhccc---chhhhhhhhcccchhhHHhhhHHHHHHHhC
Q 017162 296 VGVTFPF---FGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 332 (376)
Q Consensus 296 lA~~vp~---~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~ 332 (376)
++...+. ++-++++.|... .++.+-=++.|++.||
T Consensus 390 l~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR~ 427 (541)
T COG0833 390 LNSSFKETTVFNWLLNISGLSG--FIAWGSICLSHIRFRR 427 (541)
T ss_pred HHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3333332 455566665444 3444445666776654
No 55
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.022 Score=54.86 Aligned_cols=260 Identities=15% Similarity=0.152 Sum_probs=140.9
Q ss_pred HHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcC--CCCcc
Q 017162 33 IDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL--PDINS 110 (376)
Q Consensus 33 ~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~--~~l~~ 110 (376)
-.++|..||. +|.++..+.+.+.+.|-...-.+..++...+ ..+.+...+.++.+++..-.+.+ |-++.
T Consensus 84 mi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--------~~~~~~~~~ili~g~l~~l~~ifG~r~l~~ 154 (442)
T COG1457 84 MILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIGS--------GTGLPVWAGILIIGVLMTLVTIFGYRALHK 154 (442)
T ss_pred heeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhcccccc--------CCCCcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3578889998 5899989999999999988888888876111 12445566666666666666655 44444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhhHHHHh-cccceeeccccccCCcCCCCC
Q 017162 111 VSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFA-FAGHAVALEIQATIPSTPEKP 189 (376)
Q Consensus 111 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~~m~~p 189 (376)
+.+.+..-....+.+.+..... .++..+ ..+.. .+.+..++..+++..+-. -..-+...+..|-+ ++|
T Consensus 155 l~~~a~~~~~~lf~~l~~~~~~--~~~~~~-~~~~~----~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~----~~~ 223 (442)
T COG1457 155 LERIAVPLLLLLFLYLLALLFR--SKGGLD-ALWVK----GPTSPLSFLSALSLVIGSFASWGPYAADYSRYA----PSP 223 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cccccc-eeecc----CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhc----CCC
Confidence 4444444333332222221111 111111 11111 122233333333332222 23455667777775 444
Q ss_pred cccchhhhhhhHHHHHHHHHhhhcceeecccCCCC-chhhhcccCCchHHHHHHHHHHHHHHHHhhceeccchHHHHHHH
Q 017162 190 SKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV-DDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM 268 (376)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 268 (376)
+.++.-.....+......+-...|.....+-|+.. ..++...+.+ .-..+.+...+....+--...++..-.+.+.
T Consensus 224 t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i 300 (442)
T COG1457 224 TPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANI 300 (442)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 32222244446666777777888888888888776 3344444432 3334555666666666666666666555555
Q ss_pred HhhhcCCCCCchhhhhhHHHHHHHHHHHHHh----cccchhhhhhhhcccchhhHHhh
Q 017162 269 MIKRMNFPPGAAVRVVARSAYVAFTLFVGVT----FPFFGDLLGFFGGFGFTPTSYFL 322 (376)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~----vp~~~~v~~l~Ga~~~~~l~~il 322 (376)
..+- ++.++.+...+. ...++|+. ..+++.++.++|+.........+
T Consensus 301 ~~~l-----~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~i 351 (442)
T COG1457 301 IPKL-----SKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMI 351 (442)
T ss_pred hhhh-----hhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5431 233444444332 33333333 45677778777776654444333
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.25 E-value=0.058 Score=52.65 Aligned_cols=213 Identities=11% Similarity=0.095 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhh---HHHHHHHhc
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKC---LKKFVEMAC 80 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~---l~~~~~~~~ 80 (376)
++.+..+.....-|.|.....|... ..-=-+...-+||||+.+..+.-..+..|-....-.+..+. +.....-..
T Consensus 90 lIa~~~~i~va~slaEl~Sa~PtsG--gLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~n 167 (550)
T KOG1289|consen 90 LIAGFFSICVALSLAELCSAMPTSG--GLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTN 167 (550)
T ss_pred HHHHHHHHHHHhHHHHHHhhCCCCC--cHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcC
Confidence 3455556666666677555556321 21222333347778776655544444443333332222222 222211111
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhcC--CCCcchhHHHHHHHHHHHHHHHHHHHh--hhcccc---ccccc-ccc-cCCCc
Q 017162 81 SHCKPLRQTFWILIFGSLHFFLSQL--PDINSVSSVSLAAAVMSLSYSTIAWAG--SLSHGR---IENVS-YAY-KHTSS 151 (376)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~pl~~~--~~l~~l~~~s~~~~~~~~~~~~i~~~~--~~~~~~---~~~~~-~~~-~~~~~ 151 (376)
++. ..++.....+..++.+..+++ ...+.+.+++.+++...++..++..+. ....++ +++.. ++. .+.+.
T Consensus 168 p~y-~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sg 246 (550)
T KOG1289|consen 168 PNY-EPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSG 246 (550)
T ss_pred CCC-cccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCC
Confidence 211 222333334444444333333 234667777777777655433332222 112221 11110 110 11111
Q ss_pred ch-hHHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCC
Q 017162 152 AD-YMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV 224 (376)
Q Consensus 152 ~~-~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 224 (376)
+. +...+..++-.-++.+.|--..+.+..|- ||+++ +.+|.+..+..++.++=..+-+.-..+-++|.
T Consensus 247 w~~~G~afil~f~~~~wt~sGyDa~~H~aEE~----~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 247 WKNNGWAFILGFFNPAWTMSGYDAAAHMAEET----KNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred CCcchHHHHHhhccceeEEeccCchHHHHHHh----cchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 21 34455555666666777777777888885 89987 46788777766666554444333344445433
No 57
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=96.91 E-value=0.16 Score=50.20 Aligned_cols=85 Identities=12% Similarity=0.199 Sum_probs=59.3
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..|..|.-++-||++..+.+..+...+.+++...+.+...+..++..+ +++...-+++..++..-.....-+
T Consensus 106 ~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GG~ 177 (471)
T TIGR02119 106 AITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT--------GLSYLTALFIFSSSVLIYTTFGGF 177 (471)
T ss_pred CccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhH
Confidence 459999999999976556677777777777777777777777766554 344455555666666777777788
Q ss_pred cchhHHHHHHHHH
Q 017162 109 NSVSSVSLAAAVM 121 (376)
Q Consensus 109 ~~l~~~s~~~~~~ 121 (376)
+...+...+=...
T Consensus 178 ~av~~td~iQ~~v 190 (471)
T TIGR02119 178 RAVALTDAIQGIV 190 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777655443
No 58
>PRK11375 allantoin permease; Provisional
Probab=96.85 E-value=0.37 Score=47.72 Aligned_cols=280 Identities=10% Similarity=-0.012 Sum_probs=129.1
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHH-HHHHhhhhhHhhhchhhHHHHHHHhccC---------CCCcchhHH--HHHHH
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQL-IVQVGCDIVYMVTGGKCLKKFVEMACSH---------CKPLRQTFW--ILIFG 96 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~---------~~~~~~~~~--~~i~~ 96 (376)
..++.-++|..||.+ |..+..+... +..+|=-..-....++.+..++....+. ..+.+...+ .++..
T Consensus 88 Gl~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~ 166 (484)
T PRK11375 88 GVPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFW 166 (484)
T ss_pred CCChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHH
Confidence 358999999999985 8766666653 4555555555666677777666554311 011221222 23445
Q ss_pred HHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcc-cccccccccccC-CCcchhHHHHHhHhhHHHHhcc-cce
Q 017162 97 SLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSH-GRIENVSYAYKH-TSSADYMFRVFNALGQISFAFA-GHA 173 (376)
Q Consensus 97 ~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~-~~~ 173 (376)
++..+.... ..+.++++...+.-......+...+....+ +..+..+....+ .+.......+..++...+=++. .-.
T Consensus 167 ~l~~~~~~~-g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~ 245 (484)
T PRK11375 167 LVNVGIGFG-GGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAV 245 (484)
T ss_pred HHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 555666543 556666665544443322111111111111 111111111100 0001112233333333333343 345
Q ss_pred eeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhccee----ecccCCCCch--hhhcccCCchHHHHHHHHHHH
Q 017162 174 VALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG----YWAFGQDVDD--NVLMALKRPGWLIAAANLMVV 247 (376)
Q Consensus 174 ~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~g----y~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~ 247 (376)
+.|+.-|.. |+|++.. +....+..+...+...+|... ...+|+...| +++...++ ......+-+...
T Consensus 246 ~~~D~tRy~----k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v 318 (484)
T PRK11375 246 SASDFTQNA----HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVIL 318 (484)
T ss_pred cccchhccc----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHH
Confidence 888998875 6665432 444445555554443334322 3455544333 34443332 223333444455
Q ss_pred HHHHHhh-ceeccchHHHHHHHHhhhcCCCCCchhhhhhH---HHHHHHHHHHHHhcccchhhhhhhhcccchhhHHhh
Q 017162 248 VHVIGSY-QVFAMPVFHLLEGMMIKRMNFPPGAAVRVVAR---SAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFL 322 (376)
Q Consensus 248 i~~~~s~-pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~lA~~vp~~~~v~~l~Ga~~~~~l~~il 322 (376)
+....+- ....+|.--.+.+.+.++.+ ++|...- +..++.+..+-.....|.+++++.|++.++....++
T Consensus 319 ~a~~~tN~~~N~ys~~~~l~~l~pk~i~-----~~~~~~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 319 MTTISTNATGNIIPAGYQIAALAPTKLT-----YKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred HHHHHHHHHhhcccHHHHHHHhCcCccc-----hhhHHHHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555553 34667777777777754311 1222111 111222221111112277778887777766655443
No 59
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=96.83 E-value=0.11 Score=50.20 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=59.0
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..|..|.-++-||++..|.+..+...+..+......+...+..++... +++...-.++.+++..-....--+
T Consensus 65 ~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~--------gi~~~~~~ii~~~i~~~Yt~~GG~ 136 (407)
T TIGR00813 65 AYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELIT--------GLDLYLSLLLLGAITILYTVFGGL 136 (407)
T ss_pred CCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CchHHHHHHHHHHHHHHHHHHcch
Confidence 459999999999975567766666677777777777877787777654 234444455566666667777777
Q ss_pred cchhHHHHHHHHH
Q 017162 109 NSVSSVSLAAAVM 121 (376)
Q Consensus 109 ~~l~~~s~~~~~~ 121 (376)
+...+...+=.+.
T Consensus 137 ~av~~Td~iQ~~i 149 (407)
T TIGR00813 137 KAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776655443
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.83 E-value=0.59 Score=46.29 Aligned_cols=85 Identities=14% Similarity=0.196 Sum_probs=56.3
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..|..|.-++-||++..+....+...+..++...+.+...+..++.+. +++.....++..++..-.+....+
T Consensus 107 ~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~--------gi~~~~~iii~~~iv~iYt~~GGl 178 (483)
T PRK09442 107 AVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT--------GISYETGLLIFGITVALYTAFGGF 178 (483)
T ss_pred CccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHhccH
Confidence 459999999999976545555555555555556666667777777654 344444555666666777788888
Q ss_pred cchhHHHHHHHHH
Q 017162 109 NSVSSVSLAAAVM 121 (376)
Q Consensus 109 ~~l~~~s~~~~~~ 121 (376)
+...+...+=.+.
T Consensus 179 ~av~~TD~iQ~~i 191 (483)
T PRK09442 179 RAVVLTDALQGIV 191 (483)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777654443
No 61
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.70 E-value=0.025 Score=56.44 Aligned_cols=170 Identities=14% Similarity=0.132 Sum_probs=98.7
Q ss_pred HHHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeec--ccCCC-Cchhhhc-
Q 017162 155 MFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW--AFGQD-VDDNVLM- 230 (376)
Q Consensus 155 ~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~--~fg~~-~~~~il~- 230 (376)
+.++.+++-+..|+|.+-..+-..-.|- |||+| +.++++..++.....+|....+.-=+ -|.+. .+++...
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~----kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~ 305 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEA----KNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALA 305 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhc----cCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccc
Confidence 7889999999999999988877777775 99987 68999999999999999876653222 22220 2211111
Q ss_pred -----ccCCchHHHH---HHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCC-----CCCchhhhhhHHHHHHHHHHHH
Q 017162 231 -----ALKRPGWLIA---AANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNF-----PPGAAVRVVARSAYVAFTLFVG 297 (376)
Q Consensus 231 -----~~~~~~~~~~---~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lA 297 (376)
...+ .+... +.+....+.+..+----+++.-+.+..+-..+.-. -.++.+-+....+..+...+.+
T Consensus 306 spF~iai~~-~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~ 384 (554)
T KOG1286|consen 306 SPFVIAIGN-AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAA 384 (554)
T ss_pred cHHHHHHhc-cCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHH
Confidence 1111 11222 56666666666666566677777776664322100 0111112222333333344444
Q ss_pred Hhccc-----chhhhhhhhcccchhhHHhhhHHHHHHHhC
Q 017162 298 VTFPF-----FGDLLGFFGGFGFTPTSYFLPSIMWLVIKK 332 (376)
Q Consensus 298 ~~vp~-----~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~ 332 (376)
..... ++.++++.|-- +.+++..=++.|++.|+
T Consensus 385 ~~~~~~~~~~f~~L~~~~si~--tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 385 LNFSLGAATVFNWLVNLSSIG--TLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHhccccchHHHHHHHHHhHH--HHHHHHHHHHHHeeeee
Confidence 33322 57777776543 45666666666666654
No 62
>PRK12488 acetate permease; Provisional
Probab=96.65 E-value=0.44 Score=48.03 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=56.8
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..|..|.-++=||++..|.+..+...+.........+...+..++.++ +++...-+++.+++..-.+..--+
T Consensus 129 ~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~--------gi~~~~~iii~~~i~~~Yt~~GGm 200 (549)
T PRK12488 129 KYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF--------GISYLYAVVIVGALMVLYVTFGGM 200 (549)
T ss_pred CcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhccch
Confidence 358888888888754457777776666666666667777777766653 344444455566666677777788
Q ss_pred cchhHHHHHHHHH
Q 017162 109 NSVSSVSLAAAVM 121 (376)
Q Consensus 109 ~~l~~~s~~~~~~ 121 (376)
+...+...+=.+.
T Consensus 201 ~av~~td~iQ~~i 213 (549)
T PRK12488 201 LATTWVQIIKAVL 213 (549)
T ss_pred hHHHHHHHHHHHH
Confidence 8877777654443
No 63
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.47 E-value=0.86 Score=45.94 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=51.5
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
+.|..|.-++=||+|..|.+..+...+.........+...+..++.++ +++...-.++.+++.......--+
T Consensus 129 ~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~--------gi~~~~~iii~~~i~~~Yt~~GGm 200 (549)
T TIGR02711 129 RYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF--------GLNYHVAVVLVGILMVMYVLFGGM 200 (549)
T ss_pred CccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhh
Confidence 458899888888755446665555555555555666666666666553 234344455566666666777777
Q ss_pred cchhHHHHHH
Q 017162 109 NSVSSVSLAA 118 (376)
Q Consensus 109 ~~l~~~s~~~ 118 (376)
+...+...+=
T Consensus 201 ~av~~td~iQ 210 (549)
T TIGR02711 201 LATTWVQIIK 210 (549)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 64
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=96.03 E-value=1.6 Score=43.37 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=57.3
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..|..|.-++-||+++.|.+..+...+..+..+...+...++.++...+ .+...-..+...++.....+--+
T Consensus 104 ~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v~~Yt~~gG~ 175 (493)
T COG0591 104 ATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIVALYTFLGGL 175 (493)
T ss_pred CccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHHHHHHHHcCh
Confidence 4599999999999556799999999999999999999998888865542 22233334455555566666666
Q ss_pred cchhHHHH
Q 017162 109 NSVSSVSL 116 (376)
Q Consensus 109 ~~l~~~s~ 116 (376)
++..+...
T Consensus 176 ~av~~Td~ 183 (493)
T COG0591 176 RAVVWTDF 183 (493)
T ss_pred hHHHHHHH
Confidence 66666554
No 65
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=95.80 E-value=2 Score=41.48 Aligned_cols=57 Identities=19% Similarity=0.103 Sum_probs=42.1
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhcccchhhhhhhhcccchhhHHhhhHHHHHHHhCC
Q 017162 277 PGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKP 333 (376)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~ 333 (376)
+.|.+|...|.....++..+.+...+.+.++.+.+.+.+..+-+..+.+..+..+|+
T Consensus 322 ~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 322 PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 356677778777666666666655588899999988888777777777777766665
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=95.39 E-value=1.5 Score=42.30 Aligned_cols=174 Identities=17% Similarity=0.070 Sum_probs=80.1
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..++.-++|..||.+ |..+..+...+...|-........++.++... +.+...+.++..++..+.+... .
T Consensus 70 G~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~--------~~~~~~~~~i~~~l~~~~~~~G-~ 139 (404)
T PRK11017 70 GLSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT--------GLDINLLIVLSGLLMTVTAYFG-I 139 (404)
T ss_pred CcCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHH-H
Confidence 358999999999985 87776666555555544444444444444332 1222335555556556655442 3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhhHHHHh-cccceeeccccccCCcCCC
Q 017162 109 NSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFA-FAGHAVALEIQATIPSTPE 187 (376)
Q Consensus 109 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~~~~i~~~m~~~m~ 187 (376)
+.++++...+........+...+....+....+.-.+.++.. . ..+..++...+-. -..-++.++.-|.. |
T Consensus 140 ~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~---~~~~~a~~~~~g~~~~~~~~~~DysRy~----k 211 (404)
T PRK11017 140 SALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAE-P---LDFSAALTLVVGSFISGGTLTADFVRFG----R 211 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCC-c---ccHHHHHHHHHHHHHHhHhcCCChHhhc----c
Confidence 444444433333222211111111111110000001110111 1 2333344433322 24456788888874 4
Q ss_pred CCcccchhhhhhhHHHHHHHHHhhhcceeecccCC
Q 017162 188 KPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ 222 (376)
Q Consensus 188 ~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 222 (376)
+|++. ......++.+...+...+|.......|+
T Consensus 212 ~~~~~--~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 212 SAKIA--VLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred Cccce--eehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44331 1333444445555555556554455554
No 67
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=94.87 E-value=4.6 Score=40.21 Aligned_cols=83 Identities=11% Similarity=-0.040 Sum_probs=46.6
Q ss_pred cccHHHHHHHHhCCCCcCeee---hhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIV---LPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL 105 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~---~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 105 (376)
..|..|.-++=||++ .|.+. .+.........+..-+...+..++.++ +++...-.++..++.......
T Consensus 107 ~~T~~e~l~~Ry~~~-~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------gi~~~~~iii~~~iv~iYt~~ 177 (502)
T PRK15419 107 ALTLPDYFTGRFEDK-SRILRIISALVILLFFTIYCASGIVAGARLFESTF--------GMSYETALWAGAAATILYTFI 177 (502)
T ss_pred ceeHHHHHHHHhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHh
Confidence 347888888888864 34432 222233333333333444455554442 344455556666777777787
Q ss_pred CCCcchhHHHHHHHH
Q 017162 106 PDINSVSSVSLAAAV 120 (376)
Q Consensus 106 ~~l~~l~~~s~~~~~ 120 (376)
--++...+...+=.+
T Consensus 178 GGl~aV~~TD~iQ~~ 192 (502)
T PRK15419 178 GGFLAVSWTDTVQAS 192 (502)
T ss_pred hhHHHHHHHHHHHHH
Confidence 778877777665443
No 68
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=94.68 E-value=4.7 Score=39.43 Aligned_cols=292 Identities=13% Similarity=0.072 Sum_probs=125.4
Q ss_pred cccHHHHHHHHhCCCCcCe---eehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccC----C-----CCcchhHHHHHHH
Q 017162 29 FDRYIDLGRHAFGPKLGPW---IVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSH----C-----KPLRQTFWILIFG 96 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~----~-----~~~~~~~~~~i~~ 96 (376)
..+|..+.|..||- +|.. +.+...-+.-||. ..-..+..+..++....+. . .+.+...++....
T Consensus 102 gIpFpv~~RaSFGi-~Ga~~p~l~R~i~A~~WyGv---qty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~i 177 (497)
T COG1953 102 GIPFPVLSRASFGI-YGANFPALIRAIVAIVWYGV---QTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFI 177 (497)
T ss_pred CCCchHHHHHHHhh-hhhhHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHH
Confidence 46999999999995 4532 2233333333333 1222344444444443321 1 1123333333222
Q ss_pred H-HHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhccccccccccccc-C-CCcchhHHHHHhHhhHHHHhc-ccc
Q 017162 97 S-LHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYK-H-TSSADYMFRVFNALGQISFAF-AGH 172 (376)
Q Consensus 97 ~-~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~faf-~~~ 172 (376)
. .+--++..+.+++++++-..+-..+.+...-.++....+........+.+ . .+.......+...+...+-.| ...
T Consensus 178 fW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~ 257 (497)
T COG1953 178 FWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLA 257 (497)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 2 11123344567777776655544443332222222222211100001110 1 111122223322222222112 345
Q ss_pred eeeccccccCCcCCCCCcccchhhhhhhHH----HHHHHHHhhhcceeecccCCCCch--hhhcccCCchHHHHHHHHHH
Q 017162 173 AVALEIQATIPSTPEKPSKILMWKGALGAY----FVNAICYFPVALIGYWAFGQDVDD--NVLMALKRPGWLIAAANLMV 246 (376)
Q Consensus 173 ~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~----~~~~~~Y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~ 246 (376)
.|+|+.-|.- |+|+... +--.++. .+...+=...+...+..||++.-+ +++.++++..+..-++.+.+
T Consensus 258 lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~ 331 (497)
T COG1953 258 LNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTF 331 (497)
T ss_pred cCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHH
Confidence 6888888874 5554433 2222333 333344444555678889998654 88888876443321233333
Q ss_pred HHHHH-HhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhcccchhhhhhhhcccchhhHHhhhHH
Q 017162 247 VVHVI-GSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSI 325 (376)
Q Consensus 247 ~i~~~-~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l 325 (376)
++..+ ....-...+..-.+..++.+.-+.+ +-..+.....+.+++.-+=..-.++..+++..|++-++....++-
T Consensus 332 ~iati~~Ni~aN~vsp~~D~s~l~Pk~in~k--rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmia-- 407 (497)
T COG1953 332 AVATISTNIAANIVSPGYDLSALFPKYINIK--RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIA-- 407 (497)
T ss_pred HHHHHhhhHHhccCChHHHHHHhcccccchh--hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33322 2222334455555555554432211 111111122223333332222234666666666666655553332
Q ss_pred HHHHHhCCC
Q 017162 326 MWLVIKKPK 334 (376)
Q Consensus 326 ~~l~~~~~~ 334 (376)
=|+..||+|
T Consensus 408 Dyflirk~~ 416 (497)
T COG1953 408 DYFLVRKGR 416 (497)
T ss_pred HHHhhhcCc
Confidence 244455543
No 69
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=94.67 E-value=5.6 Score=40.19 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=50.2
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..|-.|.-++=||+|..|.+..+...+.........+...+..++.+. +++...-+++.+++..-.+..--+
T Consensus 94 ~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~--------gi~~~~~iii~~~i~~iYt~~GG~ 165 (552)
T TIGR03648 94 KYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL--------EVDFETGVFIGMAIVFFYAVLGGM 165 (552)
T ss_pred CccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhhhH
Confidence 347777777777755446665556656666666666666666666553 234444455556666666677777
Q ss_pred cchhHHHHHH
Q 017162 109 NSVSSVSLAA 118 (376)
Q Consensus 109 ~~l~~~s~~~ 118 (376)
+...+...+=
T Consensus 166 ~aV~~TD~iQ 175 (552)
T TIGR03648 166 KGVTWTQVAQ 175 (552)
T ss_pred HHHHHHHHHH
Confidence 7776666544
No 70
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=94.53 E-value=5.5 Score=39.51 Aligned_cols=83 Identities=16% Similarity=0.069 Sum_probs=45.3
Q ss_pred cccHHHHHHHHhCCCCcCeee---hhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIV---LPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQL 105 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~---~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 105 (376)
..|-.|.-++=||++ .|.+. .+...+........-+...+..++.++ +++...-.++..++..-....
T Consensus 103 ~~T~~e~l~~Ryg~~-~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~--------gi~~~~~iii~~~i~~~Yt~~ 173 (487)
T TIGR02121 103 SITLPDFFENRFNDK-SRLLRIISALIILVFFTIYTSSGLVAGGKLFESTF--------GLDYKTGLLIGALIIVIYTFF 173 (487)
T ss_pred CccHHHHHHHHhCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHh
Confidence 458888888889864 34332 222222222333344444455555443 234444455566666666777
Q ss_pred CCCcchhHHHHHHHH
Q 017162 106 PDINSVSSVSLAAAV 120 (376)
Q Consensus 106 ~~l~~l~~~s~~~~~ 120 (376)
--++...+...+=.+
T Consensus 174 GGl~av~~TD~iQ~~ 188 (487)
T TIGR02121 174 GGFLAVSWTDFVQGL 188 (487)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777766654433
No 71
>PRK09395 actP acetate permease; Provisional
Probab=94.49 E-value=6.1 Score=39.89 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=52.0
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..|+.|.-++=||+|..|.+..+...+..+....+.+...+..++.+. +++...-.++..++..-.+..--+
T Consensus 131 ~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~--------gi~~~~~ili~~~i~~iYt~~GGm 202 (551)
T PRK09395 131 KYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF--------GLNYHVAVVLVGVLMMVYVLFGGM 202 (551)
T ss_pred CccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHhhcch
Confidence 469999999889854446665555555555555555566666555543 344455555666666667777777
Q ss_pred cchhHHHHHH
Q 017162 109 NSVSSVSLAA 118 (376)
Q Consensus 109 ~~l~~~s~~~ 118 (376)
+...+...+=
T Consensus 203 ~av~~TD~iQ 212 (551)
T PRK09395 203 LATTWVQIIK 212 (551)
T ss_pred HHHHHHHHHH
Confidence 7776666543
No 72
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=94.07 E-value=4.2 Score=38.55 Aligned_cols=81 Identities=10% Similarity=0.197 Sum_probs=50.0
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhc--CCCC
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQ--LPDI 108 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l 108 (376)
+..|..++-+||++ .+...+...+.......+-+...+.-++.+. +.+...+..+..+..+-+.+ .++.
T Consensus 43 ~l~~~~~~~~g~~~-~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------g~~~~~~~~~~~~~~~~ll~~~~~~y 113 (358)
T PF01566_consen 43 GLAEGIRERFGRGW-AWFLWILIFLANIATQAAEIIGIAIALNLLF--------GIPLWIWVLLVAVIAILLLWLSSGGY 113 (358)
T ss_pred ChhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 77888888888765 4444555556666565555555555554332 34556666666665555555 6778
Q ss_pred cchhHHHHHHHH
Q 017162 109 NSVSSVSLAAAV 120 (376)
Q Consensus 109 ~~l~~~s~~~~~ 120 (376)
+.+..+...-..
T Consensus 114 ~~~E~~~~~lv~ 125 (358)
T PF01566_consen 114 RRLERILKVLVA 125 (358)
T ss_pred hHHHHHHHHHHH
Confidence 888777654444
No 73
>PRK10484 putative transporter; Provisional
Probab=93.76 E-value=3.7 Score=41.13 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=15.2
Q ss_pred cccHHHHHHHHhCCCCcCeeehh
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLP 51 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~ 51 (376)
..|..|.-++-||++ .+.+...
T Consensus 100 ~~T~~e~l~~Ryg~~-~~~~~~~ 121 (523)
T PRK10484 100 ITTIPDFLEERYDKT-TRRIVSI 121 (523)
T ss_pred CccHHHHHHHhcCch-hHHHHHH
Confidence 458889989999976 3544333
No 74
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=93.60 E-value=7.6 Score=37.76 Aligned_cols=196 Identities=14% Similarity=0.045 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCc
Q 017162 7 WVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPL 86 (376)
Q Consensus 7 ~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~ 86 (376)
|..--|....++-. ++.++..+.|..|....=++.+..|++..+..++-.+-..++.+...+..++.+++ .
T Consensus 82 G~~~Gy~i~~fL~A-~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------v 152 (529)
T COG4147 82 GWTGGYPILLFLIA-EYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------V 152 (529)
T ss_pred HHHHHHHHHHHHHH-HHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------C
Confidence 34444443333332 23333335699998887777665688877777777777778888888888777653 2
Q ss_pred chhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHH-Hhhhccc-ccc---------c-c-cccccCCC--c
Q 017162 87 RQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAW-AGSLSHG-RIE---------N-V-SYAYKHTS--S 151 (376)
Q Consensus 87 ~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~-~~~~~~~-~~~---------~-~-~~~~~~~~--~ 151 (376)
+...-.++..+++.....+-.++..+|...+=-+..+...++.. ......+ .+. + . +.+....+ .
T Consensus 153 ~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~ 232 (529)
T COG4147 153 PYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLL 232 (529)
T ss_pred CceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCc
Confidence 33334455666666777788888988888754443332222211 1111111 110 0 0 00010001 1
Q ss_pred chhHHHHHhHhhHHHHhcccc-eeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeec
Q 017162 152 ADYMFRVFNALGQISFAFAGH-AVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYW 218 (376)
Q Consensus 152 ~~~~~~~~~~~~~~~faf~~~-~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 218 (376)
..+..+++.-.=..++...+- +.....+.- |+-+.-+|++.++..+...+|+..-..|+.
T Consensus 233 ~~~~i~~isl~~aLm~GTAgLPHil~RFfTv-------p~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 233 YKDPIDFISLGFALMVGTAGLPHILMRFFTV-------PDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred ccCHHHHHHHHHHHHHccCCCCeEEEEEEec-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444444343445554443 344455554 333333499999999999999977666654
No 75
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=93.14 E-value=0.042 Score=53.71 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=39.2
Q ss_pred ccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHh
Q 017162 30 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 79 (376)
Q Consensus 30 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 79 (376)
.++.-++|..||. +|..+..+...+.+.|-...-....++.+..+.+..
T Consensus 71 l~~~v~sR~~FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 71 LPTMVLSRASFGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp --HHHHTTTTS-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCchhcchhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3788999999997 599888888888888888888888899999887754
No 76
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=92.01 E-value=4.4 Score=39.06 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=44.4
Q ss_pred cccHHHHHHHHhCCCC-cCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCC
Q 017162 29 FDRYIDLGRHAFGPKL-GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPD 107 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~-g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 107 (376)
..|..|.-++-||++. .+.+..+..++.........+...+..++... +++.....++..++.......--
T Consensus 68 ~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~--------gi~~~~~~~i~~~i~~iYt~~GG 139 (406)
T PF00474_consen 68 AVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF--------GIPYNTAILIVGVIVIIYTFFGG 139 (406)
T ss_dssp --SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------T--HHHHHHHHHHHHHHTTCTT-
T ss_pred hhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhcc--------chhhhHHHHHHHHHHHHhhhhhh
Confidence 4599999999999762 14443344444555555555555565555442 34555555666667777777777
Q ss_pred CcchhHHHHHHHH
Q 017162 108 INSVSSVSLAAAV 120 (376)
Q Consensus 108 l~~l~~~s~~~~~ 120 (376)
++...+...+=.+
T Consensus 140 l~av~~td~iQ~~ 152 (406)
T PF00474_consen 140 LRAVAWTDFIQGV 152 (406)
T ss_dssp -----SHHHHHHH
T ss_pred HhhhhHHHHHHHH
Confidence 7777666654443
No 77
>PRK00701 manganese transport protein MntH; Reviewed
Probab=91.63 E-value=14 Score=36.06 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=41.0
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHH--HHHhhcCCCC
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSL--HFFLSQLPDI 108 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l 108 (376)
+..|+.|+-+||++ .++..+...+.+.+...+-....+.-++.++ +++......+.+.. .+.....++.
T Consensus 95 ~l~~~ir~~~~~~~-~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~--------gip~~~~v~i~~~~~~~~l~l~~~~y 165 (439)
T PRK00701 95 DLAQACRDRYPRPV-VWFLWIQAELAIMATDLAEVIGAAIALKLLF--------GIPLLQGALITALDTFLILMLQRRGF 165 (439)
T ss_pred CHHHHHHHHCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 78999999999754 4544455555555555555554444443321 23434443433332 2222235567
Q ss_pred cchhHHHH
Q 017162 109 NSVSSVSL 116 (376)
Q Consensus 109 ~~l~~~s~ 116 (376)
+.+..+..
T Consensus 166 ~~~E~i~~ 173 (439)
T PRK00701 166 RPLEAIIG 173 (439)
T ss_pred cHHHHHHH
Confidence 77777754
No 78
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=91.44 E-value=0.4 Score=40.80 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=85.1
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhc---------cCCC-C----cc--------h
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC---------SHCK-P----LR--------Q 88 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~---------~~~~-~----~~--------~ 88 (376)
..++++..-|.| .|-.+..+++++++||-...|........-++.-... +.|. + |+ .
T Consensus 131 emgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmday 209 (319)
T KOG3832|consen 131 EMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAY 209 (319)
T ss_pred hHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhhhhcCCccccccCCcccccccccchHHHhhhHHH
Confidence 456777777875 6888889999999999999997666554443332211 1111 1 21 1
Q ss_pred hHHHHH-HHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhhHHHH
Q 017162 89 TFWILI-FGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISF 167 (376)
Q Consensus 89 ~~~~~i-~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 167 (376)
+.+.++ ..++.+|+.+. ++++-+.+..+...+-.............+...+ +...+++...+-++-.-++...|
T Consensus 210 r~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~l~tmqaeed----aa~a~p~arc~cgfgkl~~~aly 284 (319)
T KOG3832|consen 210 RFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGISLATMQAEED----AAAAHPPARCFCGFGKLFGCALY 284 (319)
T ss_pred HHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhhhhhhhhccc----ccccCCccccccccccccchhhH
Confidence 233333 34455677766 5666666666555544322111111111222111 11233444455566667889999
Q ss_pred hcccceeeccccccC
Q 017162 168 AFAGHAVALEIQATI 182 (376)
Q Consensus 168 af~~~~~~~~i~~~m 182 (376)
+|.+|.+.|+....+
T Consensus 285 ~~~a~cmapda~gag 299 (319)
T KOG3832|consen 285 AFMAHCMAPDAIGAG 299 (319)
T ss_pred HHHhhccCCCCCCCC
Confidence 999999999999875
No 79
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=88.31 E-value=23 Score=33.47 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=53.1
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..|..|+-++=+-.+.-.+...+.++....+..++..+..++.++..+ +.+...-.++++..+..-..+...
T Consensus 105 AltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~--------gidY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 105 ALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL--------GIDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred CeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------CCCchhhHHHHHHHHHHHHhhcce
Confidence 457788877776434556777788888888999999999999888775 344455556666666666666555
Q ss_pred cchhH
Q 017162 109 NSVSS 113 (376)
Q Consensus 109 ~~l~~ 113 (376)
+....
T Consensus 177 RAvvl 181 (473)
T COG4145 177 RAVVL 181 (473)
T ss_pred eeeeh
Confidence 55433
No 80
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=87.18 E-value=28 Score=33.24 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=62.2
Q ss_pred CCCCcccchhhhhhhH---HHHHHHHHhhhcceeecccC---CC-CchhhhcccCC---chHHHHHHHHHHHHHHHHhhc
Q 017162 186 PEKPSKILMWKGALGA---YFVNAICYFPVALIGYWAFG---QD-VDDNVLMALKR---PGWLIAAANLMVVVHVIGSYQ 255 (376)
Q Consensus 186 m~~p~~~~~~~~~~~~---~~~~~~~Y~~~g~~gy~~fg---~~-~~~~il~~~~~---~~~~~~~~~~~~~i~~~~s~p 255 (376)
+|||+|. .++....+ ......+|.-.+..|...-+ +. .+++++.+..+ ++.+..+..+...+..+++--
T Consensus 208 ~~~~~~~-~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~i 286 (378)
T TIGR00796 208 VTKPKKI-TKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAV 286 (378)
T ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Confidence 4777663 34455433 34555567777777765433 11 23344444321 123333444444555544433
Q ss_pred eeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhcccchhhhhhhhcccchhhHHhhhHHHHHHH
Q 017162 256 VFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVI 330 (376)
Q Consensus 256 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~ 330 (376)
-......|.++++..| .+ .-..-....+.+..++. -+++.++++ +...+.++.|...-+..
T Consensus 287 Gli~~~a~~f~~~~~k-----~~---y~~~v~~~~l~s~~ia~--~Gl~~Ii~~----~~PvL~~~YP~~i~lil 347 (378)
T TIGR00796 287 GLTTACSEYFHKLVPK-----LS---YKTWVIVFTLFSFIVAN--LGLTQIISI----SIPVLMIIYPLAIVLIL 347 (378)
T ss_pred HHHHHHHHHHHHhcCC-----CC---HHHHHHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3333445555555421 11 11112222233333333 267777764 46778888888665543
No 81
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=86.85 E-value=4.4 Score=38.67 Aligned_cols=78 Identities=18% Similarity=0.379 Sum_probs=60.5
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 108 (376)
..-..+++++.||+ +|+.+..+...+.|++++++.....+|.+++..+ ..+.+.|.++..+...-++.. .+
T Consensus 254 ~~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------k~~y~~~v~~~~l~s~~ia~~-Gl 324 (378)
T TIGR00796 254 AQILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------KLSYKTWVIVFTLFSFIVANL-GL 324 (378)
T ss_pred HHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHh-CH
Confidence 34677999999998 6999999999999999999999998888887632 366677877777766666655 45
Q ss_pred cchhHHH
Q 017162 109 NSVSSVS 115 (376)
Q Consensus 109 ~~l~~~s 115 (376)
+++-..+
T Consensus 325 ~~Ii~~~ 331 (378)
T TIGR00796 325 TQIISIS 331 (378)
T ss_pred HHHHHHH
Confidence 5554443
No 82
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=85.07 E-value=11 Score=36.65 Aligned_cols=102 Identities=12% Similarity=0.264 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhCcccC--C--CcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 6 SWVTTLNTMWQMINLHECV--P--GVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 6 ~~~~~~~t~~ll~~~~~~~--~--~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
..+.-.|.+...+-..... + .++..-..+++++.+|+ .|..+..+...+.|+-++++-...++|.+++..+
T Consensus 233 ~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~---- 307 (427)
T PF05525_consen 233 ILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP---- 307 (427)
T ss_pred HHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3444556665555543211 1 12234677899999997 6999999999999999999999999999998764
Q ss_pred CCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHH
Q 017162 82 HCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSL 116 (376)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 116 (376)
..+.+.|.++..++.+.++.+ .++.+-.+|.
T Consensus 308 ---kisY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~ 338 (427)
T PF05525_consen 308 ---KISYKVWVIIFTIFSFIIANL-GLDQIIKISV 338 (427)
T ss_pred ---ccChHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 366788888888888888877 5666555553
No 83
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=83.43 E-value=6.3 Score=37.12 Aligned_cols=82 Identities=9% Similarity=0.026 Sum_probs=53.4
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCCcc
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINS 110 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 110 (376)
|.+|++++..||+ +|.+..+...+.+.-...++....++.+...- ......+..+...+.+-...-|+=.+
T Consensus 115 Si~~i~~~~lG~~-~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p--------~~~~~~~~~I~~Ai~~G~~~y~~~~~ 185 (376)
T PF02554_consen 115 SIGEIAGKYLGKR-AKKLFLIFIFFLLILVIAVFADVVANTFVNSP--------WAATSSLLFIPIAILFGLLVYKRGGN 185 (376)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--------hHHHHHHHHHHHHHHHhHhheecCCc
Confidence 9999999999986 78888888888888888888777776665321 11123333444444455444444455
Q ss_pred hhHHHHHHHHH
Q 017162 111 VSSVSLAAAVM 121 (376)
Q Consensus 111 l~~~s~~~~~~ 121 (376)
+...+.+++..
T Consensus 186 ~~~~t~i~vvl 196 (376)
T PF02554_consen 186 LGPATIIGVVL 196 (376)
T ss_pred hHhhHHHHHHH
Confidence 66666666553
No 84
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=82.73 E-value=30 Score=34.70 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=47.6
Q ss_pred HhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccc-cCCCcchhHHHHHhHhhHHHHhcccceeeccc
Q 017162 101 FLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLS-HGRIENVSYAY-KHTSSADYMFRVFNALGQISFAFAGHAVALEI 178 (376)
Q Consensus 101 pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i 178 (376)
-++..|.+++.+++.......-.+..++..+.+.. .+..++.++-. +++....+..-...++++..|+.+.-.-....
T Consensus 192 ~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 192 FFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred HHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEE
Confidence 34556777777776655543222222222222221 12111111100 12222333444578899999998766655666
Q ss_pred cccCCcCCCCCcccchhhhhhhHHHHHHHHH
Q 017162 179 QATIPSTPEKPSKILMWKGALGAYFVNAICY 209 (376)
Q Consensus 179 ~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y 209 (376)
+.+ .+|++.+..|............-
T Consensus 272 ~~S-----y~~~~~n~~~~a~~v~~~~~~~s 297 (523)
T PF00209_consen 272 YGS-----YNKFKNNIFRDALIVAFINTLVS 297 (523)
T ss_dssp HHT-----TS-TTS-SHHHHHHHHHHHHHHH
T ss_pred EcC-----cCCCCccccccceEEEcCchhhh
Confidence 666 33444445454443333333333
No 85
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=82.51 E-value=50 Score=32.11 Aligned_cols=118 Identities=13% Similarity=0.177 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHhhhcceeecccCC---CCc-hhhhcccCC---chHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhh
Q 017162 199 LGAYFVNAICYFPVALIGYWAFGQ---DVD-DNVLMALKR---PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIK 271 (376)
Q Consensus 199 ~~~~~~~~~~Y~~~g~~gy~~fg~---~~~-~~il~~~~~---~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~ 271 (376)
.++...-.++|...+..|...-+. +.+ ++++....+ ++.+..+..+.+.+..+++---....+.|.+++..+
T Consensus 229 ~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~- 307 (427)
T PF05525_consen 229 LIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP- 307 (427)
T ss_pred HHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 345556667788888877766553 233 355555432 123434444555555555554455666777877775
Q ss_pred hcCCCCCchhhhhhHHHHHHHHHHHHHhcccchhhhhhhhcccchhhHHhhhHHHHHHH
Q 017162 272 RMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVI 330 (376)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~ 330 (376)
+ .+-+.+. .+....++++|. =.++.++++ +.+.+.++.|...-+..
T Consensus 308 k----isY~~~v---~i~~i~S~~ian--~Gl~~Ii~~----s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 308 K----ISYKVWV---IIFTIFSFIIAN--LGLDQIIKI----SVPILMFIYPVAIVLIL 353 (427)
T ss_pred c----cChHHHH---HHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 1 1111111 122233333332 245666655 47888999999777665
No 86
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=80.46 E-value=59 Score=31.59 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=25.9
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHH
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVE 77 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 77 (376)
..+|+++.. +|+| +++ ....+...+..+.-|.++.+=.+.-...
T Consensus 74 ~~a~~~l~~---~~~~-~~~-G~~gv~~~~~i~sfYsvI~GWil~Y~~~ 117 (439)
T COG0733 74 VGAFRKLAP---KKKW-EWI-GWFGVLGGFLILSFYSVIGGWILSYLVK 117 (439)
T ss_pred hHHHHHhcc---Cccc-hhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777776 5543 443 5555666666666676666655554443
No 87
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=72.64 E-value=96 Score=30.07 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=88.1
Q ss_pred chhhhhh-hHHHHHHHHHhhhcceeecccCCCCchhhhcccCCchHHHHHHHHHHHHHH--HHhhceeccchHHHHHHHH
Q 017162 193 LMWKGAL-GAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHV--IGSYQVFAMPVFHLLEGMM 269 (376)
Q Consensus 193 ~~~~~~~-~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~--~~s~pl~~~p~~~~~~~~~ 269 (376)
+-.+... .......+-.++....++..|+.--++.--+-+++.+....+......... ..++|.+.++.+...-..+
T Consensus 222 ~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFl 301 (415)
T COG0814 222 NSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFL 301 (415)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 3333244 344444445556677777777654444444444555555555555443333 3778888888876655533
Q ss_pred hhhc----------CCCCCchhhhhhHHHHHHHHHHHHHhccc-chhhhhhhhcccchhhHHhhhHHHHHHHhCCC
Q 017162 270 IKRM----------NFPPGAAVRVVARSAYVAFTLFVGVTFPF-FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK 334 (376)
Q Consensus 270 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~lA~~vp~-~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~ 334 (376)
+..- +.++....|..........+.+.++..|. +....+..|++..+..+-++|.+++++-++..
T Consensus 302 gv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~ 377 (415)
T COG0814 302 GVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLI 377 (415)
T ss_pred CchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2111 11233444666667777777888888775 77778888989999999999999999986543
No 88
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=72.46 E-value=55 Score=31.94 Aligned_cols=154 Identities=11% Similarity=0.076 Sum_probs=73.0
Q ss_pred HHHHhHhhHHHHhcccceeeccccccCCcCCCCCcccc--hhhhhhhHHHHHHHHHhhhcceeeccc---CCC-Cchhhh
Q 017162 156 FRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKIL--MWKGALGAYFVNAICYFPVALIGYWAF---GQD-VDDNVL 229 (376)
Q Consensus 156 ~~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~--~~~~~~~~~~~~~~~Y~~~g~~gy~~f---g~~-~~~~il 229 (376)
-+...+++-.+|+-.. .+-.++. +.+|+++.. ..++-.++...-.++|...+..|...- ++. ..++++
T Consensus 194 Y~TMDalaal~Fg~ii----i~~i~~~--G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il 267 (439)
T PRK15433 194 YLTMDTLGAMVFGIVI----VNAARSR--GVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAIL 267 (439)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHH
Confidence 3455666667776433 2222221 124444322 112333455556667888887776542 222 233444
Q ss_pred cccCC---chHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhcCCCCCchhhhhhHHHHHHHHHHHHHhcccchhh
Q 017162 230 MALKR---PGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDL 306 (376)
Q Consensus 230 ~~~~~---~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v 306 (376)
...-+ +.++..+..+.+.+..+++---....+.|.+++... ..+-....+....++.+|. =.++++
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---------isY~~~v~i~~l~S~~lSn--~G~~~I 336 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---------LSYRTLVFILGGFSMVVSN--LGLSQL 336 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CcHHHHHHHHHHHHHHHHH--hHHHHH
Confidence 44321 233443444444555555544444555555555542 1111112222223333322 245566
Q ss_pred hhhhhcccchhhHHhhhHHHHHHH
Q 017162 307 LGFFGGFGFTPTSYFLPSIMWLVI 330 (376)
Q Consensus 307 ~~l~Ga~~~~~l~~ilP~l~~l~~ 330 (376)
+++ ..+.+.++.|...-+..
T Consensus 337 I~~----s~PiL~~iYP~~IvLil 356 (439)
T PRK15433 337 IQI----SVPVLTAIYPPCIALVV 356 (439)
T ss_pred HHH----HHHHHHHHhHHHHHHHH
Confidence 654 36888889998766654
No 89
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=66.29 E-value=20 Score=34.38 Aligned_cols=80 Identities=18% Similarity=0.393 Sum_probs=65.8
Q ss_pred ccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCCc
Q 017162 30 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN 109 (376)
Q Consensus 30 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 109 (376)
+=..+..++.||+ .|+.+...++.+.|+-++++-...++|.+++..+ ..+.+.|..+..++.+-.+.+ .++
T Consensus 263 ~IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p-------~~SY~~~v~if~i~sflvan~-GL~ 333 (431)
T COG1114 263 QILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP-------KLSYKTWVIIFTLISFLVANL-GLE 333 (431)
T ss_pred HHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHHHHHHHh-hHH
Confidence 3567889999997 7999999999999999999999999999998864 367788888888888877776 566
Q ss_pred chhHHHHHH
Q 017162 110 SVSSVSLAA 118 (376)
Q Consensus 110 ~l~~~s~~~ 118 (376)
++-..|.--
T Consensus 334 ~Ii~isvPv 342 (431)
T COG1114 334 QIIKISVPV 342 (431)
T ss_pred HHHHHHHHH
Confidence 666666433
No 90
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=63.95 E-value=50 Score=32.21 Aligned_cols=102 Identities=16% Similarity=0.216 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHhCccc--CCC--cccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhc
Q 017162 5 ISWVTTLNTMWQMINLHEC--VPG--VRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC 80 (376)
Q Consensus 5 ~~~~~~~~t~~ll~~~~~~--~~~--~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~ 80 (376)
...+...|.+...+-.... .++ ++..=.....++.+|+ +|+.+..+.+...|+-++++-...++|.+++..
T Consensus 236 ~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~---- 310 (439)
T PRK15433 236 GVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYV---- 310 (439)
T ss_pred HHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 3445556666555554321 111 1222445678888997 799999999999999999999999999888763
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhcCCCCcchhHHHH
Q 017162 81 SHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSL 116 (376)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 116 (376)
+.+++.|..+..++.++++.+ .++++-..+.
T Consensus 311 ----~isY~~~v~i~~l~S~~lSn~-G~~~II~~s~ 341 (439)
T PRK15433 311 ----PLSYRTLVFILGGFSMVVSNL-GLSQLIQISV 341 (439)
T ss_pred ----CCcHHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Confidence 256678888888999988877 4555544443
No 91
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=49.43 E-value=70 Score=27.35 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=47.4
Q ss_pred chhhhhhhhcccchhhHHhhhHHHHHHHhCCC----------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017162 303 FGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPK----------RFSPKWIINWASIFIGVFIMLASTIGGFRNIVA 367 (376)
Q Consensus 303 ~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~----------~~~~~~~~~~~~i~~g~~~~v~gt~~si~~l~~ 367 (376)
+++-.-+.|++.+.-+..++|+...+...++. .+|-....+.+.-.+|++..+....-|...+.+
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556677888888888899999998888762 123345677777778888777777777777655
No 92
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=46.30 E-value=3.1e+02 Score=27.26 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=49.9
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCCCcc
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINS 110 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 110 (376)
-|.-++++.-|+ .|+.+ |+..++...+....-+=.....++.-++...+-..+...+...++....+.-.+....+++
T Consensus 163 l~pl~g~~~~g~-~g~~I-D~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~~i~~~S~~~Gl~k 240 (485)
T PF02028_consen 163 LYPLLGDRINGP-LGKII-DILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVITVIFTISAVSGLDK 240 (485)
T ss_dssp CHHHHHHHHHSH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred hhhhcCCcccCc-chhhh-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 466677777675 56554 6666666555555555555666666666654321111112222233334455666666744
Q ss_pred -hhHHHHHHHHHHHH
Q 017162 111 -VSSVSLAAAVMSLS 124 (376)
Q Consensus 111 -l~~~s~~~~~~~~~ 124 (376)
.+++|...+...+.
T Consensus 241 GIk~LS~~n~~l~~~ 255 (485)
T PF02028_consen 241 GIKRLSNINVYLAFA 255 (485)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 77777666665443
No 93
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=44.30 E-value=3.5e+02 Score=27.23 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=40.2
Q ss_pred ccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHh
Q 017162 30 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 79 (376)
Q Consensus 30 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 79 (376)
....++-.+..||| |.......+++..+..+++-+...+.......++.
T Consensus 325 ~p~~~i~~~~lg~k-~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg 373 (550)
T KOG1289|consen 325 QPIVQIYYQALGKK-GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDG 373 (550)
T ss_pred ChHHHHHHHhcCCC-ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccC
Confidence 37788888899997 67888888889999999998888888887776654
No 94
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=40.15 E-value=3.5e+02 Score=26.04 Aligned_cols=77 Identities=9% Similarity=0.122 Sum_probs=41.3
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHH--HHHHHHHhhcCCCC
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILI--FGSLHFFLSQLPDI 108 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~l 108 (376)
+-.|+.|+-++| ++++...+...+...+...+-....+.-++.++ +.+...+..+ ...+.+.+.+.++.
T Consensus 65 ~l~~~~r~~~~~-~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~--------g~p~~~~v~~~~~~~~~~~~~~~~~y 135 (390)
T TIGR01197 65 DLAEVCREHYPK-VPRITLWILAELAIIATDMAEVIGTAIALNLLS--------HIPLWGGVLITIVDVFLFLFLDKPGL 135 (390)
T ss_pred CHHHHHHHHCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCcHHHHHHHHHHHHHHHHHHHhCCc
Confidence 889999999997 466655444444444444443333333333322 2333333333 33344444556777
Q ss_pred cchhHHHH
Q 017162 109 NSVSSVSL 116 (376)
Q Consensus 109 ~~l~~~s~ 116 (376)
+.+..+-.
T Consensus 136 r~~E~~~~ 143 (390)
T TIGR01197 136 RILEAFVA 143 (390)
T ss_pred eeHHHHHH
Confidence 77777743
No 95
>CHL00020 psbN photosystem II protein N
Probab=40.14 E-value=35 Score=21.25 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHHHHhhhcceeecccCCC
Q 017162 196 KGALGAYFVNAICYFPVALIGYWAFGQD 223 (376)
Q Consensus 196 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 223 (376)
.+...+..+.+++....|..-|.+||+-
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 3455667777778888888889999964
No 96
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=37.93 E-value=42 Score=21.20 Aligned_cols=28 Identities=25% Similarity=0.062 Sum_probs=22.1
Q ss_pred hhhhhHHHHHHHHHhhhcceeecccCCC
Q 017162 196 KGALGAYFVNAICYFPVALIGYWAFGQD 223 (376)
Q Consensus 196 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 223 (376)
.+...+..+.+++..+.|..-|.+||+-
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 5556677777888888888889999964
No 97
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=36.86 E-value=1.1e+02 Score=30.84 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=38.0
Q ss_pred HHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcc
Q 017162 157 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVAL 214 (376)
Q Consensus 157 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 214 (376)
.++..++++.-+..+...=..+-.++ ++|++ ..++....+...+..+|..+..
T Consensus 224 tfF~vf~vfFpaatgilaG~nisGdL----~~Pq~-~IP~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 224 TFFSVFAVFFPAATGILAGANISGDL----KDPQK-AIPLGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred ceEeeeeeecchhhhhhccccccCCC----CCchh-hcccchhhhhhhhhhhhhhhhh
Confidence 66677777777776555445566665 88987 5678888888888888865443
No 98
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=33.86 E-value=5.8e+02 Score=26.75 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHHhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhccee
Q 017162 157 RVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIG 216 (376)
Q Consensus 157 ~~~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~g 216 (376)
++-..+|++.-+-.+...=-..-.|+ |+|+| .++|-...+...+++.|.++.++-
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgEL----k~PSk-SIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGEL----KAPSK-SIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccc----cCccc-cCCccchHHHHHHHHHHHHHHHHh
Confidence 34444565555544433333444554 99998 689999999999999999877644
No 99
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=33.00 E-value=1.7e+02 Score=30.72 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=49.6
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHH-HHHHhc--------cCCC--CcchhHHHHHHHHHH
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKK-FVEMAC--------SHCK--PLRQTFWILIFGSLH 99 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~-~~~~~~--------~~~~--~~~~~~~~~i~~~~~ 99 (376)
+|--+.| .+||.+|. .+.+|.++..--...-|++..-+.+-. +++... +... ..+-+.+-.++.++.
T Consensus 181 sYfmISR-sLGPEFGg-AVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m 258 (1075)
T KOG2082|consen 181 SYFMISR-SLGPEFGG-AVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILM 258 (1075)
T ss_pred eeEEEec-ccCccccc-eeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHH
Confidence 7877766 45666765 457777777777777788777666654 222211 0000 012233322222222
Q ss_pred --HHhhcCCCCcchhHHHHHHHHHHHHH
Q 017162 100 --FFLSQLPDINSVSSVSLAAAVMSLSY 125 (376)
Q Consensus 100 --~pl~~~~~l~~l~~~s~~~~~~~~~~ 125 (376)
+.+.=+|-..+++.+++++++.+++.
T Consensus 259 ~lIVf~GVK~Vnk~A~vfL~CVILSIla 286 (1075)
T KOG2082|consen 259 ALIVFVGVKFVNKFAPVFLACVILSILA 286 (1075)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22233455666777777777666543
No 100
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=32.74 E-value=32 Score=21.43 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHhhhcceeecccCCCC
Q 017162 198 ALGAYFVNAICYFPVALIGYWAFGQDV 224 (376)
Q Consensus 198 ~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 224 (376)
...+..+.+++-.+.|..-|.+||+..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 345566666777777888899998643
No 101
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=31.93 E-value=1.3e+02 Score=24.41 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=28.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017162 332 KPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFY 375 (376)
Q Consensus 332 ~~~~~~~~~~~~~~~i~~g~~~~v~gt~~si~~l~~~~~~~~~~ 375 (376)
++..++..+..++.+-.+++++++.|.+...++ -++-+..|+|
T Consensus 33 ~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~-h~~~~~~hf~ 75 (143)
T cd08763 33 RNETKRSTKILHGLLHIMALVISLVGLVAVFDY-HQANGYPDMY 75 (143)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-ccccCCCccc
Confidence 333334456789999999999999999876543 2333455554
No 102
>PRK15015 carbon starvation protein A; Provisional
Probab=30.57 E-value=1.8e+02 Score=30.02 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=28.9
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhH
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCL 72 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l 72 (376)
|.+|++++..|++ ++.+..+.+...+.-...++..++.+.+
T Consensus 146 Sig~ia~~~iG~~-~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 146 SLGELVKEEMGPT-AGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred cHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 7776666666665555555555555444
No 103
>PRK09928 choline transport protein BetT; Provisional
Probab=27.68 E-value=7.1e+02 Score=26.01 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=20.8
Q ss_pred HHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHh
Q 017162 34 DLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 79 (376)
Q Consensus 34 ~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 79 (376)
-++++.-|+ +|+.+-.++++.+.+|...+-=.. ...++.-+...
T Consensus 183 llG~ri~G~-~G~~IDi~av~~tvfGiaTSLGlG-v~qi~~GL~~l 226 (679)
T PRK09928 183 IFGKRINGP-IGHSVDIAAVIGTIFGIATTLGIG-VVQLNYGLSVL 226 (679)
T ss_pred hcCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344444454 676665455555555555444333 33333333333
No 104
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=27.54 E-value=1.4e+02 Score=24.44 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=35.1
Q ss_pred hhhhcccchhhHHhhhHHHHHHHhCCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017162 308 GFFGGFGFTPTSYFLPSIMWLVIKKPKRF-SPKWIINWASIFIGVFIMLASTIGGFRNIVA 367 (376)
Q Consensus 308 ~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~-~~~~~~~~~~i~~g~~~~v~gt~~si~~l~~ 367 (376)
...|+-.+....|..|.+.+....+..+. ...+---.+.+++|+..+++|+..+-+...+
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788899999876541111110 0001222355678888888888777766554
No 105
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=27.45 E-value=3.7e+02 Score=26.49 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=24.9
Q ss_pred cccHHHHHHHHhCCC----CcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHh
Q 017162 29 FDRYIDLGRHAFGPK----LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 79 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 79 (376)
..+.++..+-.+|+| +|+.+-.++++...+|...+ +=.....++.-+++.
T Consensus 119 ~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~ats-LGlg~~qi~~gl~~l 172 (453)
T TIGR00842 119 PLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATS-LGLGAPQINAGLSAL 172 (453)
T ss_pred CCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHh
Confidence 346677776666643 45555434444444444443 333344444444444
No 106
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=27.41 E-value=2.4e+02 Score=23.96 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=29.9
Q ss_pred hhhHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017162 321 FLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADAST 371 (376)
Q Consensus 321 ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~gt~~si~~l~~~~~~ 371 (376)
++|.++-+...++++.+..+...+...++|+.-...|...-..++.+.+++
T Consensus 82 ~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~~g~~~~~~~~~~y~~~ 132 (186)
T PF07086_consen 82 LIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLIYGAMYYFPEVQQYYRH 132 (186)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566555555554443344445666666666666666666666665554
No 107
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=27.06 E-value=6.1e+02 Score=24.86 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=38.4
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHh
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 79 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 79 (376)
.+.++.+..+|.+++..+......+..+++..+++...+..+..+.++.
T Consensus 290 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg 338 (482)
T TIGR00907 290 PIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDG 338 (482)
T ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6778888888875666666777788888888888888888888776653
No 108
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=25.46 E-value=2e+02 Score=25.15 Aligned_cols=37 Identities=8% Similarity=0.040 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCC
Q 017162 338 PKWIINWASIFIGVFIMLASTIGGFRNIVADA--STYSFY 375 (376)
Q Consensus 338 ~~~~~~~~~i~~g~~~~v~gt~~si~~l~~~~--~~~~~~ 375 (376)
..+..++.+-..++.+.+.|.+...+ ..++- +..|+|
T Consensus 56 ~~k~~H~~L~~lAl~~~ivGl~avf~-~hn~~~~~~~hfy 94 (214)
T cd08764 56 RLKLLHAVLHLLAFILAVIGLKAVFD-SHNLAKPPIPNMY 94 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCCCccc
Confidence 34678889999999999999876443 33444 445554
No 109
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=25.08 E-value=2.2e+02 Score=23.03 Aligned_cols=38 Identities=5% Similarity=0.211 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 017162 337 SPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFY 375 (376)
Q Consensus 337 ~~~~~~~~~~i~~g~~~~v~gt~~si~~l~~~~~~~~~~ 375 (376)
+.++..++.+-..++++.+.|.+...+ --++-+..|++
T Consensus 38 ~~~k~iH~~l~~la~~~~vvGl~avf~-~~~~~~~~~~~ 75 (144)
T cd08766 38 EVQKAVHLTLHLVALVLGIVGIYAAFK-FHNEVGIPNLY 75 (144)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCccccc
Confidence 345678999999999999999975544 33444555554
No 110
>PRK09950 putative transporter; Provisional
Probab=24.62 E-value=7.2e+02 Score=24.90 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=44.4
Q ss_pred ccccHHHHHHHHhCCC----CcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhh
Q 017162 28 RFDRYIDLGRHAFGPK----LGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLS 103 (376)
Q Consensus 28 ~~~sy~~l~~~~~G~~----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 103 (376)
+..+.++..+-.+|+| +|+.+ |+..++...+....-+=.....++.-++...+...+...+...+.....++-+|
T Consensus 165 ~pl~iss~~~pllG~~~~g~~G~~I-Dil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~if~~S 243 (506)
T PRK09950 165 KGLSLSGIIAAITGVKPQGPWGRLV-DLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFVILLSGVIFCLS 243 (506)
T ss_pred CCCchHHhhHhhcCCCCCCcchHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH
Confidence 3446777777777743 45554 555444444444444444445555554444322111111222222333444455
Q ss_pred cCCCC-cchhHHHHHHHHHH
Q 017162 104 QLPDI-NSVSSVSLAAAVMS 122 (376)
Q Consensus 104 ~~~~l-~~l~~~s~~~~~~~ 122 (376)
....+ |-.+++|.+.+...
T Consensus 244 ~~~Gl~kGIk~LS~~N~~la 263 (506)
T PRK09950 244 SYIGIDNGLQRLSKMVGWGA 263 (506)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 55455 44566665555443
No 111
>TIGR00909 2A0306 amino acid transporter.
Probab=24.18 E-value=4.9e+02 Score=24.93 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=39.2
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHH
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEM 78 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 78 (376)
...++.++..|+ ++..+..+...+.++++..+.+...+..+..+.++
T Consensus 265 ~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQG-IGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567788887776 67778889999999999999999999998887655
No 112
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=22.95 E-value=54 Score=23.82 Aligned_cols=60 Identities=8% Similarity=0.183 Sum_probs=37.2
Q ss_pred HhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhh-hHHHHHHHHHhhhcceeecccCCCCchh
Q 017162 161 ALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL-GAYFVNAICYFPVALIGYWAFGQDVDDN 227 (376)
Q Consensus 161 ~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~-~~~~~~~~~Y~~~g~~gy~~fg~~~~~~ 227 (376)
..|+...+-.|...+.+..++= .+|++.. +|++. +++++. +-+..|++.|..||...++.
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~----s~~~~~~-wRalSii~FIlG--~vl~lGilifs~y~~C~~~~ 76 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNT----SNVTDYV-WRALSVTCFIVG--AVLLLGLFVFSMYRKCSGSM 76 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccC----CCCcchh-HHHHHHHHHHHH--HHHHHHHHHHHHhcccCCCc
Confidence 4566666777777778888861 3677754 45554 555444 33456788888887444433
No 113
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=21.53 E-value=3.1e+02 Score=24.55 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=16.9
Q ss_pred CCCcccchhhhhhhHHHHHHHHHhhhcc
Q 017162 187 EKPSKILMWKGALGAYFVNAICYFPVAL 214 (376)
Q Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~Y~~~g~ 214 (376)
++|+ +++.+..-.++..++|...-.
T Consensus 22 ~~P~---lr~~~liPl~inllLf~~~l~ 46 (251)
T PRK04949 22 LQPG---LRRFVILPLLVNILLFGGAFW 46 (251)
T ss_pred cCcc---hHHHHHHHHHHHHHHHHHHHH
Confidence 5665 347777888777777776633
No 114
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=21.48 E-value=4.7e+02 Score=21.61 Aligned_cols=51 Identities=20% Similarity=0.428 Sum_probs=18.9
Q ss_pred cchhhhhhhhcccchhhHHhhhHHHHHHHhCCCCCchHHHHHHHHHHHHHHH
Q 017162 302 FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFI 353 (376)
Q Consensus 302 ~~~~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~ 353 (376)
+.+....+..........+.+-...+ ..+|+++.......++.....+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~a~~~~~~~~~~~~~~~~ 168 (205)
T PF07695_consen 118 YYDSALVLFSLFALIIILLILIIIIY-AWRKGNRPARYFLIGWLLFLLSSLI 168 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCccHHHHHHHHHHHHHHHHH
Confidence 44444444433333333333333333 2244443332223344444333333
Done!