Query 017162
Match_columns 376
No_of_seqs 127 out of 1123
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:57:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.1 2E-09 6.7E-14 103.8 15.8 315 4-335 47-380 (445)
2 3gia_A Uncharacterized protein 98.9 5.8E-08 2E-12 93.4 18.5 311 3-335 45-370 (444)
3 4djk_A Probable glutamate/gamm 98.7 1.4E-06 4.6E-11 85.3 20.5 198 13-222 57-262 (511)
4 2jln_A MHP1; hydantoin, transp 97.2 0.0023 7.8E-08 62.2 12.0 87 30-122 88-175 (501)
5 3dh4_A Sodium/glucose cotransp 95.4 0.64 2.2E-05 45.2 16.8 84 29-121 82-166 (530)
6 2xq2_A Sodium/glucose cotransp 93.7 2.9 0.0001 41.1 17.4 84 29-121 111-195 (593)
7 2a65_A Leutaa, Na(+):neurotran 81.2 40 0.0014 32.4 15.6 94 101-199 180-280 (519)
8 2wsw_A BCCT family betaine/car 29.1 1.4E+02 0.0048 28.4 7.5 93 29-123 178-272 (509)
9 3l1l_A Arginine/agmatine antip 15.9 6E+02 0.021 22.8 12.5 50 29-79 259-308 (445)
10 3gia_A Uncharacterized protein 13.8 3E+02 0.01 24.9 6.3 48 31-79 259-306 (444)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.08 E-value=2e-09 Score=103.76 Aligned_cols=315 Identities=15% Similarity=0.104 Sum_probs=157.5
Q ss_pred hhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCC
Q 017162 4 VISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC 83 (376)
Q Consensus 4 ~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~ 83 (376)
++.++..........|...+.|+.. ..-+..++.+||.+| .+......+.......++....++.++...+...
T Consensus 47 li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 120 (445)
T 3l1l_A 47 LVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCFGPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK--- 120 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---
Confidence 4455666666666777666666543 667778999998654 4555655555555555555555555543322110
Q ss_pred CCcchhHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHHHhHhh
Q 017162 84 KPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALG 163 (376)
Q Consensus 84 ~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (376)
.++....+. +......-....+..+....++.......+...++..+.......++....... .....++.++..++.
T Consensus 121 ~~~~~~~~~-~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 198 (445)
T 3l1l_A 121 DPWVLTITC-VVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLN 198 (445)
T ss_dssp SHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHH
T ss_pred ccHHHHHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHH
Confidence 011111111 111122222233456666666655544433322222222222211111100110 011223567889999
Q ss_pred HHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCCc----hhhhcccC--CchH
Q 017162 164 QISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVD----DNVLMALK--RPGW 237 (376)
Q Consensus 164 ~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~~~--~~~~ 237 (376)
...|+|.+.........|+ |||+| +.+|++..+...+.++|....+......+.+.. ++..+-.+ ...+
T Consensus 199 ~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~ 273 (445)
T 3l1l_A 199 VTLWSFIGVESASVAAGVV----KNPKR-NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDT 273 (445)
T ss_dssp HHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTT
T ss_pred HHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHH
Confidence 9999999999999999996 99965 678999999999999999877665554443321 11111111 0123
Q ss_pred HHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhc-----C--CCCCchhhhhhHHHHHHHHHHHHHh--cc----cch
Q 017162 238 LIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM-----N--FPPGAAVRVVARSAYVAFTLFVGVT--FP----FFG 304 (376)
Q Consensus 238 ~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~lA~~--vp----~~~ 304 (376)
...+..+...+..+.+.--......+.+...-..+. . ++++...+-..-... ++.++.+. .| .++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~--~~~~~~~~~~~~~~~~~~~ 351 (445)
T 3l1l_A 274 AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGI--LMTIFQLSSISPNATKEFG 351 (445)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHH--HHHHHHHSTTSHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHH--HHHHHHHHHHcccHHHHHH
Confidence 334444555555554443333333343333322110 0 011111221111111 12222222 23 245
Q ss_pred hhhhhhhcccchhhHHhhhHHHHHHHhCCCC
Q 017162 305 DLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR 335 (376)
Q Consensus 305 ~v~~l~Ga~~~~~l~~ilP~l~~l~~~~~~~ 335 (376)
.+.++.+ .+..+.|.++.+.+++.+++++
T Consensus 352 ~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 352 LVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 5555543 3457889999999999987664
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.91 E-value=5.8e-08 Score=93.40 Aligned_cols=311 Identities=9% Similarity=0.011 Sum_probs=158.7
Q ss_pred hhhHHHHHHHHHHHHHhCcccCCCcccccHHHHHHHHhCCCC-cCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhcc
Q 017162 3 LVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKL-GPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACS 81 (376)
Q Consensus 3 l~~~~~~~~~t~~ll~~~~~~~~~~~~~sy~~l~~~~~G~~~-g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 81 (376)
.++.+++...+...+.|...+.|+.. ..-+..++.+||++ +.++ .....+........+....++.+...++.
T Consensus 45 ~li~~~~~~~~~~~~~el~~~~P~~G--g~y~~~~~~~G~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 118 (444)
T 3gia_A 45 FILSGIYALLVAYSYTKLGAKIVSNA--GPIAFIHKAIGDNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINA--- 118 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCTT--THHHHHHHHHCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCC--cHHHhHHHHhCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 34566677777777777766666533 56688889999853 2222 23333444444455555555555543321
Q ss_pred CCCCcchhHH-HHHHH--HHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCcchhHHHH
Q 017162 82 HCKPLRQTFW-ILIFG--SLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRV 158 (376)
Q Consensus 82 ~~~~~~~~~~-~~i~~--~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (376)
. +...+ .++.. ..+.-....+..+....++.......+...+...+.......++ +.. +...+..+.++
T Consensus 119 -~---~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~--~~~--~~~~~~g~~~~ 190 (444)
T 3gia_A 119 -P---INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPS--YVI--PDLAPSAVSGM 190 (444)
T ss_dssp -C---CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGG--GTS--CCCSHHHHHHH
T ss_pred -C---CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh--hcC--CCCCCcchHHH
Confidence 1 11122 12222 22222233345666666665544433332222222222221111 111 11223445678
Q ss_pred HhHhhHHHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCCCC----ch-hhhcccC
Q 017162 159 FNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDV----DD-NVLMALK 233 (376)
Q Consensus 159 ~~~~~~~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~----~~-~il~~~~ 233 (376)
+.+++...|+|.+.........|+ |||+| +.+|++..+...+.++|....+......+.+. ++ +......
T Consensus 191 ~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 265 (444)
T 3gia_A 191 IFASAIFFLSYMGFGVITNASEHI----ENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAK 265 (444)
T ss_dssp HHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHH
Confidence 889999999999999999999996 99975 67899999999999999977665443333221 01 1111010
Q ss_pred --CchHHHHHHHHHHHHHHHHhhceeccchHHHHHHHHhhhc---CC-CCCchhhhhhHHHHHHHHHHHHHhcccchhhh
Q 017162 234 --RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRM---NF-PPGAAVRVVARSAYVAFTLFVGVTFPFFGDLL 307 (376)
Q Consensus 234 --~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~lA~~vp~~~~v~ 307 (376)
.+.+...+..+...+..+.+.--......+.+...-..+. .. +.++............++.+++. +.+++.+.
T Consensus 266 ~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~a~~~~~~~~~~~~~-~~~~~~l~ 344 (444)
T 3gia_A 266 PFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFAL-LFNMEGVA 344 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSCCSCTHHHHHHHHHHHHHHH-HSCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCCCCCcHHHHHHHHHHHHHHH-HcCHHHHH
Confidence 0123333444444455544444444444444444332211 00 11111111111111222222222 34677777
Q ss_pred hhhhcccchhhHHhhhHHHHHHHhCCCC
Q 017162 308 GFFGGFGFTPTSYFLPSIMWLVIKKPKR 335 (376)
Q Consensus 308 ~l~Ga~~~~~l~~ilP~l~~l~~~~~~~ 335 (376)
++.+ .+..+.|.++.+.+++.+|+++
T Consensus 345 ~~~~--~~~~~~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 345 SITS--AVFMVIYLFVILSHYILIDEVG 370 (444)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHH--HHHHHHHHHHHHHHHHhhhcCC
Confidence 7643 3457888999888888876543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.69 E-value=1.4e-06 Score=85.35 Aligned_cols=198 Identities=9% Similarity=-0.024 Sum_probs=99.8
Q ss_pred HHHHHHhCcc--cCCCcccccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCC--Ccch
Q 017162 13 TMWQMINLHE--CVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCK--PLRQ 88 (376)
Q Consensus 13 t~~ll~~~~~--~~~~~~~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~--~~~~ 88 (376)
....+.|... +.| .. ..-...++.+||++| .+......+.......++....++.++.... .++.. ++..
T Consensus 57 ~al~~ael~s~~~~P-~G--G~y~~~~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~ 130 (511)
T 4djk_A 57 VGLCAAEMATVDGWE-EG--GVFAWVSNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILK--WPALNEDPITK 130 (511)
T ss_dssp HHHHHHHHHTTSCC------CHHHHHHHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT--CGGGTSCSSHH
T ss_pred HHHHHHHHcccccCC-CC--ChhhhHHhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcccccCcHHH
Confidence 4455566555 666 43 667788899998765 4445555555444444444444444432210 11101 1111
Q ss_pred hHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHH-HHHHHHHHHhhh---cccccccccccccCCCcchhHHHHHhHhhH
Q 017162 89 TFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMS-LSYSTIAWAGSL---SHGRIENVSYAYKHTSSADYMFRVFNALGQ 164 (376)
Q Consensus 89 ~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~-~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (376)
..+. +..+.+.-....+..+....+........ +...++.+.... ..+.+.+.+.+.....+.....+...++..
T Consensus 131 ~~~~-~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (511)
T 4djk_A 131 TIAA-LIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVA 209 (511)
T ss_dssp HHHH-HHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHH
T ss_pred HHHH-HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHH
Confidence 1111 12222222333456666666665543321 111111111111 112111111111111111111234456778
Q ss_pred HHHhcccceeeccccccCCcCCCCCcccchhhhhhhHHHHHHHHHhhhcceeecccCC
Q 017162 165 ISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQ 222 (376)
Q Consensus 165 ~~faf~~~~~~~~i~~~m~~~m~~p~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 222 (376)
..|+|.+.......-.|+ |||+| +.+|++..+..++.++|....+.-....++
T Consensus 210 ~~~a~~G~e~~~~~a~E~----k~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~ 262 (511)
T 4djk_A 210 FILSYMGVEASATHVNEM----SNPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPG 262 (511)
T ss_dssp HHHHHTTGGGGTGGGSSS----SCCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHhhHHHHHHHHHhc----cCccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCH
Confidence 899999999999999986 99976 688999999999999999877765555554
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.23 E-value=0.0023 Score=62.23 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=62.8
Q ss_pred ccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcc-hhHHHHHHHHHHHHhhcCCCC
Q 017162 30 DRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLR-QTFWILIFGSLHFFLSQLPDI 108 (376)
Q Consensus 30 ~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~~pl~~~~~l 108 (376)
.+|.++.|..||+ +|..+..+...+.++|-...-....++.++.+++... +++ .....++..++.++..+. .+
T Consensus 88 l~~~v~~R~~FG~-~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~----g~~~~~v~~~i~~~l~~~~~~~-G~ 161 (501)
T 2jln_A 88 INFTVAARMPFGI-RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT----GFTNLPLWIVIFGAIQVVTTFY-GI 161 (501)
T ss_dssp CCHHHHTTTTSCT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHTT-HH
T ss_pred CChhhhhHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcchHHHHHHHHHHHHHHHHHh-CH
Confidence 3799999999998 5888888888888888888888888898888775442 122 244555666677777754 56
Q ss_pred cchhHHHHHHHHHH
Q 017162 109 NSVSSVSLAAAVMS 122 (376)
Q Consensus 109 ~~l~~~s~~~~~~~ 122 (376)
+.++++........
T Consensus 162 ~~i~~~~~~~~p~~ 175 (501)
T 2jln_A 162 TFIRWMNVFASPVL 175 (501)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766655433
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=95.35 E-value=0.64 Score=45.24 Aligned_cols=84 Identities=12% Similarity=0.048 Sum_probs=40.9
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHH-HHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLI-VQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPD 107 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 107 (376)
..|..|.-++-||++ .|.+..+...+ +.+....+-+...+..++.+ . +++...-+++.+++..-.+..--
T Consensus 82 ~~T~~e~l~~Rfg~~-~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~----~----Gi~~~~~i~i~~~i~~~Yt~~GG 152 (530)
T 3dh4_A 82 IYTIPEFVEKRFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETI----L----GIPLMYSILGLALFALVYSIYGG 152 (530)
T ss_dssp CCSHHHHHHHHTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----T----TCCHHHHHHHHHHHHHHTTC---
T ss_pred CccHHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h----CCCHHHHHHHHHHHHHHHHHhcc
Confidence 459999999999975 45544433222 11111122222223333332 1 35555555666666677777777
Q ss_pred CcchhHHHHHHHHH
Q 017162 108 INSVSSVSLAAAVM 121 (376)
Q Consensus 108 l~~l~~~s~~~~~~ 121 (376)
++...+...+=...
T Consensus 153 l~aV~~TD~iQ~~i 166 (530)
T 3dh4_A 153 LSAVVWTDVIQVFF 166 (530)
T ss_dssp ---CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 77777666544443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=93.74 E-value=2.9 Score=41.14 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=43.2
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHH-HHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCC
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLI-VQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPD 107 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 107 (376)
..|..|.-++=||++ .|.+..+...+ ..+.....-+...+..++.+. +++...-.++.+++....+..--
T Consensus 111 ~~T~~e~l~~Rfg~~-~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--------Gi~~~~~i~i~~~i~~~Yt~~GG 181 (593)
T 2xq2_A 111 IYTIPEFVEKRFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFALVYSIYGG 181 (593)
T ss_dssp CCSHHHHHHHHTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHHHHHhcc
Confidence 459999999999975 35443333222 222122222222344444432 34445555566666677777777
Q ss_pred CcchhHHHHHHHHH
Q 017162 108 INSVSSVSLAAAVM 121 (376)
Q Consensus 108 l~~l~~~s~~~~~~ 121 (376)
++...+...+=...
T Consensus 182 l~av~~TD~iQ~ii 195 (593)
T 2xq2_A 182 LSAVVWTDVIQVFF 195 (593)
T ss_dssp ---CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 77776666544443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=81.15 E-value=40 Score=32.38 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=49.1
Q ss_pred HhhcCCCC-cchhHHHHHHHHHHHHHHHHHHHhhhcccc-----ccccccc-ccCCCcchhHHHHHhHhhHHHHhcccce
Q 017162 101 FLSQLPDI-NSVSSVSLAAAVMSLSYSTIAWAGSLSHGR-----IENVSYA-YKHTSSADYMFRVFNALGQISFAFAGHA 173 (376)
Q Consensus 101 pl~~~~~l-~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~ 173 (376)
-++..|.+ +...+++.+-.-...+..++..+.+..... .++.++= .+++....+..-...+.++..|+...-.
T Consensus 180 ~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~ 259 (519)
T 2a65_A 180 VSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGF 259 (519)
T ss_dssp HHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHH
Confidence 35566777 557777765554433333333333332221 1111110 1122223334457889999999997777
Q ss_pred eeccccccCCcCCCCCcccchhhhhh
Q 017162 174 VALEIQATIPSTPEKPSKILMWKGAL 199 (376)
Q Consensus 174 ~~~~i~~~m~~~m~~p~~~~~~~~~~ 199 (376)
-....+.+ .+|++.+..|...
T Consensus 260 G~~ity~S-----Y~~~~~n~~~~a~ 280 (519)
T 2a65_A 260 GAIITYAS-----YVRKDQDIVLSGL 280 (519)
T ss_dssp SHHHHHHT-----TSCTTSCCHHHHH
T ss_pred hHHhhhhc-----ccCCCcChHhhHH
Confidence 66777776 3444445545444
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=29.10 E-value=1.4e+02 Score=28.44 Aligned_cols=93 Identities=11% Similarity=0.004 Sum_probs=48.1
Q ss_pred cccHHHHH-HHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHhccCCCCcchhHHHHHHHHHHHHhhcCCC
Q 017162 29 FDRYIDLG-RHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPD 107 (376)
Q Consensus 29 ~~sy~~l~-~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 107 (376)
..-|+-++ ++.-|+ +|+.+-.++++.+.+|...+-=... ..++.-++...+...+...+..+++....+.-.|-...
T Consensus 178 s~l~PllG~~r~~G~-~G~~IDilav~at~~G~atsLGlg~-~qi~~Gl~~lfGi~~~~~~qi~ii~vit~~~~~Sa~sG 255 (509)
T 2wsw_A 178 STLVPLVGEKHVNGL-FGTVVDNFYLVALILAMGTSLGLAT-PLVTECIQYLFGIPHTLQLDAIIISCWILLNAICVAFG 255 (509)
T ss_dssp GGCHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHhhcCCcccCCc-hhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 34677888 788886 6887766666677777655543332 23333333322211111112222223334445666666
Q ss_pred C-cchhHHHHHHHHHHH
Q 017162 108 I-NSVSSVSLAAAVMSL 123 (376)
Q Consensus 108 l-~~l~~~s~~~~~~~~ 123 (376)
+ |-.+++|.+.+...+
T Consensus 256 l~kGIk~LS~~N~~la~ 272 (509)
T 2wsw_A 256 LQKGVKIASDVRTYLSF 272 (509)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6 556677765555443
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=15.94 E-value=6e+02 Score=22.81 Aligned_cols=50 Identities=18% Similarity=0.064 Sum_probs=42.5
Q ss_pred cccHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHh
Q 017162 29 FDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 79 (376)
Q Consensus 29 ~~sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 79 (376)
.....++.++.+|+ ++..++.+...+..+++..++....+..+..+.++.
T Consensus 259 ~~p~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg 308 (445)
T 3l1l_A 259 ASPFGDAARMALGD-TAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_dssp TCTHHHHHHHHHCT-THHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34788999999997 678888889999999999999999999888887653
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=13.76 E-value=3e+02 Score=24.92 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=40.1
Q ss_pred cHHHHHHHHhCCCCcCeeehhhHHHHHHhhhhhHhhhchhhHHHHHHHh
Q 017162 31 RYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA 79 (376)
Q Consensus 31 sy~~l~~~~~G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~ 79 (376)
...+..+..+|+ ++..++.+......+++..+.+...+..+..+.++.
T Consensus 259 ~~~~~~~~~~g~-~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 306 (444)
T 3gia_A 259 ALAVAAKPFLGN-LGFLLISIGALFSISSAMNATIYGGANVAYSLAKDG 306 (444)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHS
T ss_pred hHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 567788888886 677788888889999999999999899988887764
Done!