Query 017163
Match_columns 376
No_of_seqs 329 out of 3383
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:10:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 1.4E-38 2.9E-43 303.1 26.6 303 37-374 55-359 (381)
2 COG2524 Predicted transcriptio 99.8 4.4E-19 9.5E-24 154.3 13.0 121 234-375 172-292 (294)
3 COG3448 CBS-domain-containing 99.7 1.9E-16 4.2E-21 140.3 14.9 173 93-291 199-372 (382)
4 cd04641 CBS_pair_28 The CBS do 99.7 3E-16 6.5E-21 126.5 14.9 119 243-372 2-120 (120)
5 COG2524 Predicted transcriptio 99.7 9.6E-17 2.1E-21 139.8 11.9 120 144-291 172-291 (294)
6 COG3448 CBS-domain-containing 99.7 1.3E-16 2.8E-21 141.4 9.9 127 235-375 246-373 (382)
7 cd04618 CBS_pair_5 The CBS dom 99.6 1.7E-15 3.7E-20 117.8 11.3 95 243-372 2-98 (98)
8 cd04603 CBS_pair_KefB_assoc Th 99.6 3.1E-15 6.6E-20 119.0 12.9 109 243-371 2-110 (111)
9 cd04619 CBS_pair_6 The CBS dom 99.6 6.6E-15 1.4E-19 117.6 14.1 112 243-371 2-113 (114)
10 COG3620 Predicted transcriptio 99.6 3E-15 6.5E-20 121.1 11.3 119 236-375 67-185 (187)
11 cd04617 CBS_pair_4 The CBS dom 99.6 1.5E-14 3.4E-19 116.2 14.1 112 243-371 2-117 (118)
12 PRK10892 D-arabinose 5-phospha 99.6 8E-15 1.7E-19 139.2 14.4 120 234-372 202-323 (326)
13 cd04608 CBS_pair_PALP_assoc Th 99.6 5.7E-15 1.2E-19 120.0 11.0 113 243-373 3-124 (124)
14 cd04630 CBS_pair_17 The CBS do 99.6 2.8E-14 6.1E-19 113.8 14.1 112 243-372 2-114 (114)
15 cd04593 CBS_pair_EriC_assoc_ba 99.6 3E-14 6.5E-19 113.8 14.3 112 243-372 2-115 (115)
16 cd04600 CBS_pair_HPP_assoc Thi 99.6 3.2E-14 6.9E-19 115.1 13.7 117 242-372 2-124 (124)
17 COG2905 Predicted signal-trans 99.6 9.1E-15 2E-19 140.5 11.7 190 159-375 73-271 (610)
18 PRK11543 gutQ D-arabinose 5-ph 99.6 2.1E-14 4.6E-19 136.0 14.2 120 234-372 197-318 (321)
19 cd04623 CBS_pair_10 The CBS do 99.6 7.9E-14 1.7E-18 110.6 14.7 112 243-372 2-113 (113)
20 cd04642 CBS_pair_29 The CBS do 99.6 3.1E-14 6.8E-19 115.8 12.4 121 243-371 2-125 (126)
21 cd04614 CBS_pair_1 The CBS dom 99.6 4.7E-14 1E-18 109.3 11.6 95 243-372 2-96 (96)
22 cd04627 CBS_pair_14 The CBS do 99.6 7E-14 1.5E-18 113.1 13.0 119 243-370 2-121 (123)
23 cd04605 CBS_pair_MET2_assoc Th 99.6 1.8E-13 3.9E-18 108.2 14.9 108 242-371 2-109 (110)
24 cd04803 CBS_pair_15 The CBS do 99.6 1.1E-13 2.3E-18 111.6 13.7 116 243-372 2-122 (122)
25 cd04618 CBS_pair_5 The CBS dom 99.6 5.9E-14 1.3E-18 109.2 11.5 95 153-288 2-97 (98)
26 cd04607 CBS_pair_NTP_transfera 99.6 1.5E-13 3.3E-18 109.3 14.1 109 244-371 4-112 (113)
27 cd04643 CBS_pair_30 The CBS do 99.5 1.2E-13 2.6E-18 110.2 13.5 114 243-372 2-116 (116)
28 cd04624 CBS_pair_11 The CBS do 99.5 1.8E-13 4E-18 108.5 14.5 110 243-371 2-111 (112)
29 cd04801 CBS_pair_M50_like This 99.5 7.3E-14 1.6E-18 111.3 12.3 109 243-371 2-113 (114)
30 cd04629 CBS_pair_16 The CBS do 99.5 8.2E-14 1.8E-18 110.8 12.5 113 243-372 2-114 (114)
31 cd04621 CBS_pair_8 The CBS dom 99.5 1.4E-13 3E-18 113.6 14.2 115 243-372 2-135 (135)
32 cd04632 CBS_pair_19 The CBS do 99.5 1.4E-13 2.9E-18 112.2 13.8 117 243-372 2-128 (128)
33 cd04626 CBS_pair_13 The CBS do 99.5 1.7E-13 3.7E-18 108.5 13.8 109 243-371 2-110 (111)
34 cd04641 CBS_pair_28 The CBS do 99.5 1.4E-13 3E-18 110.8 13.4 118 153-288 2-119 (120)
35 PRK14869 putative manganese-de 99.5 3E-14 6.5E-19 144.4 11.6 283 48-372 68-391 (546)
36 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.6E-13 3.5E-18 107.7 13.4 104 243-371 2-105 (106)
37 cd04615 CBS_pair_2 The CBS dom 99.5 2E-13 4.4E-18 108.5 14.0 111 243-371 2-112 (113)
38 cd04631 CBS_pair_18 The CBS do 99.5 1.4E-13 3E-18 111.5 12.9 116 243-372 2-125 (125)
39 cd04639 CBS_pair_26 The CBS do 99.5 1.6E-13 3.5E-18 108.6 13.1 109 243-371 2-110 (111)
40 cd04635 CBS_pair_22 The CBS do 99.5 1.2E-13 2.7E-18 111.2 12.5 116 243-372 2-122 (122)
41 cd04613 CBS_pair_SpoIVFB_EriC_ 99.5 2.4E-13 5.1E-18 108.0 13.8 111 243-371 2-113 (114)
42 TIGR00400 mgtE Mg2+ transporte 99.5 7.5E-14 1.6E-18 137.7 13.2 172 141-372 128-304 (449)
43 cd04636 CBS_pair_23 The CBS do 99.5 2E-13 4.3E-18 112.0 13.7 115 243-372 2-132 (132)
44 cd04596 CBS_pair_DRTGG_assoc T 99.5 1.7E-13 3.6E-18 108.2 12.4 105 243-371 3-107 (108)
45 PRK07807 inosine 5-monophospha 99.5 1.4E-13 2.9E-18 135.5 14.4 115 236-374 91-205 (479)
46 cd04586 CBS_pair_BON_assoc Thi 99.5 1.6E-13 3.5E-18 113.0 12.1 115 243-372 3-135 (135)
47 cd04587 CBS_pair_CAP-ED_DUF294 99.5 3.1E-13 6.7E-18 107.3 12.9 111 243-371 2-112 (113)
48 cd04640 CBS_pair_27 The CBS do 99.5 2.3E-13 4.9E-18 110.7 12.4 112 243-371 2-125 (126)
49 cd04800 CBS_pair_CAP-ED_DUF294 99.5 5E-13 1.1E-17 105.8 14.1 109 243-371 2-110 (111)
50 cd04589 CBS_pair_CAP-ED_DUF294 99.5 5.2E-13 1.1E-17 105.8 14.1 110 243-372 2-111 (111)
51 cd04627 CBS_pair_14 The CBS do 99.5 3.3E-13 7.2E-18 109.1 13.0 121 153-288 2-122 (123)
52 cd04603 CBS_pair_KefB_assoc Th 99.5 2.8E-13 6.1E-18 107.6 12.4 109 153-288 2-110 (111)
53 cd04590 CBS_pair_CorC_HlyC_ass 99.5 5.6E-13 1.2E-17 105.5 14.0 108 243-371 2-110 (111)
54 cd04595 CBS_pair_DHH_polyA_Pol 99.5 6.3E-13 1.4E-17 105.1 14.3 107 243-371 3-109 (110)
55 COG3620 Predicted transcriptio 99.5 1.3E-13 2.8E-18 111.7 10.1 118 146-291 67-184 (187)
56 cd04588 CBS_pair_CAP-ED_DUF294 99.5 6.5E-13 1.4E-17 104.9 14.2 108 243-371 2-109 (110)
57 cd04604 CBS_pair_KpsF_GutQ_ass 99.5 4.7E-13 1E-17 106.3 13.3 111 243-371 3-113 (114)
58 PRK05567 inosine 5'-monophosph 99.5 1.1E-12 2.5E-17 130.4 19.0 220 84-372 42-265 (486)
59 cd04620 CBS_pair_7 The CBS dom 99.5 5.1E-13 1.1E-17 106.5 13.5 110 243-371 2-114 (115)
60 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 7.1E-13 1.5E-17 104.4 14.2 106 243-371 3-108 (109)
61 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 5.5E-13 1.2E-17 105.4 13.5 110 243-372 2-111 (111)
62 PRK15094 magnesium/cobalt effl 99.5 3.7E-13 8E-18 125.0 14.4 121 235-376 68-191 (292)
63 cd04619 CBS_pair_6 The CBS dom 99.5 4.6E-13 1E-17 106.8 13.0 111 154-288 3-113 (114)
64 cd04633 CBS_pair_20 The CBS do 99.5 4E-13 8.8E-18 108.1 12.4 114 243-372 2-121 (121)
65 cd04625 CBS_pair_12 The CBS do 99.5 8.2E-13 1.8E-17 104.7 14.0 111 243-372 2-112 (112)
66 KOG1764 5'-AMP-activated prote 99.5 1.5E-12 3.3E-17 124.7 18.0 195 60-291 164-359 (381)
67 PRK01862 putative voltage-gate 99.5 3.6E-13 7.8E-18 137.2 14.6 124 235-375 448-572 (574)
68 PRK14869 putative manganese-de 99.5 1.1E-12 2.3E-17 133.1 17.8 195 148-373 72-303 (546)
69 cd04585 CBS_pair_ACT_assoc2 Th 99.5 7.3E-13 1.6E-17 106.4 13.3 114 243-371 2-121 (122)
70 cd04611 CBS_pair_PAS_GGDEF_DUF 99.5 1.2E-12 2.6E-17 103.4 14.1 109 243-371 2-110 (111)
71 cd04600 CBS_pair_HPP_assoc Thi 99.5 7.8E-13 1.7E-17 106.9 12.8 122 152-288 2-123 (124)
72 cd04622 CBS_pair_9 The CBS dom 99.5 1.3E-12 2.9E-17 103.6 13.6 110 243-371 2-112 (113)
73 cd04617 CBS_pair_4 The CBS dom 99.5 7E-13 1.5E-17 106.5 12.0 111 153-288 2-117 (118)
74 cd04802 CBS_pair_3 The CBS dom 99.5 2.2E-12 4.9E-17 102.2 14.4 110 243-371 2-111 (112)
75 cd04606 CBS_pair_Mg_transporte 99.5 7E-13 1.5E-17 104.8 11.4 103 247-373 2-109 (109)
76 cd04602 CBS_pair_IMPDH_2 This 99.5 1.5E-12 3.2E-17 103.8 13.3 106 243-371 3-113 (114)
77 cd04609 CBS_pair_PALP_assoc2 T 99.5 1.4E-12 3E-17 102.8 12.9 109 243-372 2-110 (110)
78 cd04630 CBS_pair_17 The CBS do 99.5 1.8E-12 3.9E-17 103.3 13.5 111 153-288 2-113 (114)
79 cd04601 CBS_pair_IMPDH This cd 99.4 1.1E-12 2.4E-17 103.5 11.7 106 243-371 3-109 (110)
80 cd04637 CBS_pair_24 The CBS do 99.4 1.8E-12 3.9E-17 104.4 13.0 115 243-372 2-122 (122)
81 COG0517 FOG: CBS domain [Gener 99.4 3.5E-12 7.7E-17 101.7 14.2 111 240-370 5-117 (117)
82 cd04584 CBS_pair_ACT_assoc Thi 99.4 2.5E-12 5.4E-17 103.3 13.3 114 243-371 2-120 (121)
83 PRK07807 inosine 5-monophospha 99.4 8E-12 1.7E-16 123.1 19.2 206 82-359 43-251 (479)
84 cd04614 CBS_pair_1 The CBS dom 99.4 2.1E-12 4.6E-17 99.9 11.9 94 153-288 2-95 (96)
85 PRK07107 inosine 5-monophospha 99.4 1E-12 2.3E-17 130.0 12.7 107 244-372 107-218 (502)
86 cd04599 CBS_pair_GGDEF_assoc2 99.4 3E-12 6.4E-17 100.2 12.9 103 243-371 2-104 (105)
87 cd04623 CBS_pair_10 The CBS do 99.4 3.8E-12 8.1E-17 100.8 13.4 111 153-288 2-112 (113)
88 cd04610 CBS_pair_ParBc_assoc T 99.4 2.6E-12 5.6E-17 100.9 12.3 104 243-371 3-106 (107)
89 cd04607 CBS_pair_NTP_transfera 99.4 3.6E-12 7.8E-17 101.3 13.1 110 153-288 3-112 (113)
90 cd04642 CBS_pair_29 The CBS do 99.4 2.8E-12 6.1E-17 104.2 12.8 124 153-288 2-125 (126)
91 cd04639 CBS_pair_26 The CBS do 99.4 2.8E-12 6E-17 101.5 12.4 109 153-288 2-110 (111)
92 cd04594 CBS_pair_EriC_assoc_ar 99.4 3E-12 6.5E-17 100.4 12.2 100 245-371 4-103 (104)
93 cd02205 CBS_pair The CBS domai 99.4 5.3E-12 1.1E-16 99.2 13.7 111 243-371 2-112 (113)
94 TIGR03520 GldE gliding motilit 99.4 3E-12 6.6E-17 124.5 14.8 118 235-375 192-312 (408)
95 cd04605 CBS_pair_MET2_assoc Th 99.4 4.6E-12 1E-16 100.0 13.3 108 152-288 2-109 (110)
96 TIGR00393 kpsF KpsF/GutQ famil 99.4 1.9E-12 4.1E-17 119.5 12.8 113 234-365 155-268 (268)
97 cd04608 CBS_pair_PALP_assoc Th 99.4 1.2E-12 2.5E-17 106.4 9.6 113 152-289 2-123 (124)
98 PLN02274 inosine-5'-monophosph 99.4 3.6E-12 7.7E-17 126.5 14.9 112 240-374 106-222 (505)
99 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 2.5E-12 5.5E-17 126.4 13.6 113 237-374 91-203 (475)
100 cd04801 CBS_pair_M50_like This 99.4 2.4E-12 5.2E-17 102.5 11.2 109 153-288 2-113 (114)
101 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 5.3E-12 1.1E-16 99.0 13.0 104 153-288 2-105 (106)
102 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 1.8E-11 3.9E-16 120.5 19.5 111 149-291 93-203 (475)
103 cd04643 CBS_pair_30 The CBS do 99.4 3.9E-12 8.4E-17 101.4 11.9 114 153-288 2-115 (116)
104 cd04624 CBS_pair_11 The CBS do 99.4 7.2E-12 1.6E-16 99.3 13.4 110 153-288 2-111 (112)
105 cd04803 CBS_pair_15 The CBS do 99.4 4.3E-12 9.3E-17 102.2 12.2 120 153-288 2-121 (122)
106 cd04634 CBS_pair_21 The CBS do 99.4 7.7E-12 1.7E-16 104.1 14.0 126 243-371 2-142 (143)
107 TIGR01302 IMP_dehydrog inosine 99.4 3.7E-12 8.1E-17 125.5 13.8 113 238-373 84-200 (450)
108 PRK05567 inosine 5'-monophosph 99.4 3.8E-12 8.2E-17 126.7 13.9 115 236-373 89-204 (486)
109 COG4109 Predicted transcriptio 99.4 3.1E-12 6.7E-17 116.4 11.7 115 235-373 189-305 (432)
110 cd04593 CBS_pair_EriC_assoc_ba 99.4 8.8E-12 1.9E-16 99.4 13.1 111 153-288 2-114 (115)
111 cd04596 CBS_pair_DRTGG_assoc T 99.4 7.3E-12 1.6E-16 98.7 12.3 105 153-288 3-107 (108)
112 PRK11543 gutQ D-arabinose 5-ph 99.4 4.1E-12 8.9E-17 120.4 12.0 117 147-289 200-318 (321)
113 cd04615 CBS_pair_2 The CBS dom 99.4 1.2E-11 2.5E-16 98.2 12.8 111 153-288 2-112 (113)
114 TIGR00400 mgtE Mg2+ transporte 99.4 5.4E-12 1.2E-16 124.5 13.1 117 234-374 131-252 (449)
115 cd04631 CBS_pair_18 The CBS do 99.4 1.1E-11 2.4E-16 100.2 12.7 123 153-288 2-124 (125)
116 cd04598 CBS_pair_GGDEF_assoc T 99.4 1.3E-11 2.9E-16 98.8 13.0 113 243-371 2-118 (119)
117 cd04591 CBS_pair_EriC_assoc_eu 99.4 1.2E-11 2.5E-16 97.4 12.2 100 243-372 3-105 (105)
118 cd04629 CBS_pair_16 The CBS do 99.4 9.2E-12 2E-16 98.9 11.6 112 153-288 2-113 (114)
119 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 1.6E-11 3.4E-16 96.7 12.6 106 153-288 3-108 (109)
120 PRK10892 D-arabinose 5-phospha 99.4 6E-12 1.3E-16 119.5 12.1 118 146-289 204-323 (326)
121 cd04620 CBS_pair_7 The CBS dom 99.4 1.6E-11 3.6E-16 97.7 12.7 110 153-288 2-114 (115)
122 cd04638 CBS_pair_25 The CBS do 99.4 2E-11 4.4E-16 95.8 13.0 104 243-371 2-105 (106)
123 cd04590 CBS_pair_CorC_HlyC_ass 99.4 1.6E-11 3.5E-16 97.0 12.5 109 153-288 2-110 (111)
124 cd04636 CBS_pair_23 The CBS do 99.4 1.3E-11 2.7E-16 101.2 12.3 125 153-288 2-131 (132)
125 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 1.7E-11 3.7E-16 97.3 12.7 111 153-288 3-113 (114)
126 cd04626 CBS_pair_13 The CBS do 99.3 1.4E-11 3E-16 97.5 12.1 109 153-288 2-110 (111)
127 cd04588 CBS_pair_CAP-ED_DUF294 99.3 2.6E-11 5.7E-16 95.7 13.5 108 153-288 2-109 (110)
128 cd04586 CBS_pair_BON_assoc Thi 99.3 9.7E-12 2.1E-16 102.3 11.3 128 152-288 2-134 (135)
129 cd04621 CBS_pair_8 The CBS dom 99.3 1.6E-11 3.6E-16 101.2 12.6 129 153-288 2-134 (135)
130 cd04800 CBS_pair_CAP-ED_DUF294 99.3 1.9E-11 4.1E-16 96.6 12.5 109 153-288 2-110 (111)
131 cd04585 CBS_pair_ACT_assoc2 Th 99.3 2.6E-11 5.5E-16 97.3 13.0 120 153-288 2-121 (122)
132 PTZ00314 inosine-5'-monophosph 99.3 1.4E-11 3.1E-16 122.1 13.8 112 239-373 101-217 (495)
133 TIGR01137 cysta_beta cystathio 99.3 2E-11 4.3E-16 121.3 14.7 118 235-373 336-453 (454)
134 COG0517 FOG: CBS domain [Gener 99.3 3.1E-11 6.6E-16 96.3 13.1 111 150-287 5-117 (117)
135 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 3.8E-11 8.1E-16 94.8 13.4 109 153-288 2-110 (111)
136 cd04587 CBS_pair_CAP-ED_DUF294 99.3 3.2E-11 6.9E-16 95.6 13.0 111 153-288 2-112 (113)
137 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 2.7E-11 5.8E-16 96.1 12.2 111 153-288 2-113 (114)
138 cd04635 CBS_pair_22 The CBS do 99.3 2.4E-11 5.2E-16 97.8 11.9 120 153-288 2-121 (122)
139 cd04595 CBS_pair_DHH_polyA_Pol 99.3 4E-11 8.8E-16 94.6 13.0 108 152-288 2-109 (110)
140 cd04602 CBS_pair_IMPDH_2 This 99.3 3.7E-11 7.9E-16 95.7 12.5 109 153-288 3-113 (114)
141 cd04633 CBS_pair_20 The CBS do 99.3 2.8E-11 6.1E-16 97.2 11.8 119 153-288 2-120 (121)
142 cd04632 CBS_pair_19 The CBS do 99.3 4.1E-11 8.9E-16 97.5 12.5 124 153-288 2-127 (128)
143 COG2905 Predicted signal-trans 99.3 1.3E-11 2.8E-16 119.1 10.8 120 146-291 151-270 (610)
144 cd04625 CBS_pair_12 The CBS do 99.3 6.2E-11 1.3E-15 93.8 13.1 110 153-288 2-111 (112)
145 COG2239 MgtE Mg/Co/Ni transpor 99.3 2.9E-11 6.3E-16 117.3 13.2 121 141-292 129-254 (451)
146 cd04640 CBS_pair_27 The CBS do 99.3 3.2E-11 7E-16 98.0 11.5 115 153-288 2-125 (126)
147 cd04637 CBS_pair_24 The CBS do 99.3 4.5E-11 9.8E-16 96.2 12.2 120 153-288 2-121 (122)
148 cd04601 CBS_pair_IMPDH This cd 99.3 4.5E-11 9.8E-16 94.2 11.8 106 153-288 3-109 (110)
149 cd04802 CBS_pair_3 The CBS dom 99.3 9.1E-11 2E-15 92.9 13.4 110 153-288 2-111 (112)
150 PLN02274 inosine-5'-monophosph 99.3 4.9E-11 1.1E-15 118.4 14.3 115 150-291 106-222 (505)
151 cd04622 CBS_pair_9 The CBS dom 99.3 7.9E-11 1.7E-15 93.3 12.9 110 153-288 2-112 (113)
152 TIGR01302 IMP_dehydrog inosine 99.3 1.1E-10 2.3E-15 115.2 16.5 164 82-290 33-200 (450)
153 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 1E-10 2.2E-15 92.3 13.1 109 153-288 2-110 (111)
154 cd02205 CBS_pair The CBS domai 99.3 1.1E-10 2.5E-15 91.5 13.3 111 153-288 2-112 (113)
155 cd04599 CBS_pair_GGDEF_assoc2 99.3 8.9E-11 1.9E-15 91.7 12.4 102 153-287 2-103 (105)
156 cd04592 CBS_pair_EriC_assoc_eu 99.3 7.2E-11 1.6E-15 97.1 11.9 109 243-355 2-117 (133)
157 PRK07107 inosine 5-monophospha 99.3 6E-11 1.3E-15 117.6 13.3 110 154-289 107-218 (502)
158 cd04606 CBS_pair_Mg_transporte 99.3 6.6E-11 1.4E-15 93.4 11.0 102 157-289 2-108 (109)
159 PRK15094 magnesium/cobalt effl 99.3 2.1E-10 4.5E-15 106.7 16.0 164 45-260 64-227 (292)
160 cd04610 CBS_pair_ParBc_assoc T 99.3 1.5E-10 3.3E-15 90.7 12.9 105 152-288 2-106 (107)
161 TIGR03520 GldE gliding motilit 99.2 2.2E-10 4.7E-15 111.6 16.6 162 45-261 188-349 (408)
162 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.2E-10 2.6E-15 91.7 12.1 108 153-288 2-109 (110)
163 PTZ00314 inosine-5'-monophosph 99.2 1.6E-10 3.5E-15 114.7 15.7 115 149-290 101-217 (495)
164 cd04589 CBS_pair_CAP-ED_DUF294 99.2 2.2E-10 4.9E-15 90.5 13.2 109 153-288 2-110 (111)
165 cd04584 CBS_pair_ACT_assoc Thi 99.2 1.6E-10 3.5E-15 92.7 12.2 119 153-288 2-120 (121)
166 PRK01862 putative voltage-gate 99.2 9.3E-11 2E-15 119.6 12.4 120 147-291 450-571 (574)
167 cd04594 CBS_pair_EriC_assoc_ar 99.2 3E-10 6.5E-15 88.9 12.1 100 155-288 4-103 (104)
168 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.5E-10 3.3E-15 106.8 11.0 110 147-282 158-268 (268)
169 cd04591 CBS_pair_EriC_assoc_eu 99.2 5.8E-10 1.3E-14 87.6 11.7 102 153-288 3-104 (105)
170 cd04634 CBS_pair_21 The CBS do 99.2 5.4E-10 1.2E-14 93.0 12.1 126 153-288 2-142 (143)
171 COG4109 Predicted transcriptio 99.1 2.7E-10 5.9E-15 103.9 10.6 112 149-291 193-306 (432)
172 PRK11573 hypothetical protein; 99.1 1.1E-09 2.5E-14 106.6 14.7 123 235-376 188-313 (413)
173 cd04638 CBS_pair_25 The CBS do 99.1 1.7E-09 3.6E-14 84.8 12.2 104 153-288 2-105 (106)
174 cd04598 CBS_pair_GGDEF_assoc T 99.1 1.1E-09 2.3E-14 87.7 11.0 113 153-288 2-118 (119)
175 cd04592 CBS_pair_EriC_assoc_eu 99.1 2E-09 4.3E-14 88.5 11.1 113 153-274 2-118 (133)
176 TIGR01137 cysta_beta cystathio 99.0 1.6E-09 3.5E-14 107.6 12.4 116 147-290 338-453 (454)
177 PF00571 CBS: CBS domain CBS d 99.0 6.8E-10 1.5E-14 76.9 6.5 55 237-291 2-56 (57)
178 COG1253 TlyC Hemolysins and re 99.0 5.5E-09 1.2E-13 102.7 13.8 121 235-376 207-330 (429)
179 PF00571 CBS: CBS domain CBS d 99.0 1.4E-09 3.1E-14 75.3 7.0 54 321-375 4-57 (57)
180 PRK11573 hypothetical protein; 99.0 2E-08 4.2E-13 98.0 17.0 131 45-210 184-314 (413)
181 COG2239 MgtE Mg/Co/Ni transpor 98.9 6.2E-09 1.4E-13 101.2 11.2 116 234-373 132-252 (451)
182 TIGR01186 proV glycine betaine 98.8 9E-08 2E-12 91.7 14.2 110 242-375 250-359 (363)
183 PRK10070 glycine betaine trans 98.7 1.8E-07 3.8E-12 90.8 13.6 105 247-375 290-394 (400)
184 COG1253 TlyC Hemolysins and re 98.7 2.7E-07 5.9E-12 90.7 13.3 129 45-210 203-331 (429)
185 KOG2550 IMP dehydrogenase/GMP 98.5 1.9E-07 4E-12 87.2 7.4 107 243-372 117-226 (503)
186 KOG2550 IMP dehydrogenase/GMP 98.5 1.1E-06 2.4E-11 82.2 12.4 166 78-288 57-225 (503)
187 TIGR01186 proV glycine betaine 98.5 1.8E-06 3.9E-11 82.7 13.8 110 153-293 251-360 (363)
188 COG4536 CorB Putative Mg2+ and 98.5 1.1E-06 2.3E-11 81.7 10.6 121 235-375 201-325 (423)
189 COG4535 CorC Putative Mg2+ and 98.4 7.3E-07 1.6E-11 77.5 8.1 119 236-375 69-190 (293)
190 COG4536 CorB Putative Mg2+ and 98.4 4.1E-06 8.9E-11 77.8 13.1 129 46-209 198-326 (423)
191 PRK10070 glycine betaine trans 98.4 5.8E-06 1.3E-10 80.3 12.8 105 157-292 290-394 (400)
192 KOG0474 Cl- channel CLC-7 and 98.4 9.9E-07 2.1E-11 86.5 7.4 137 235-372 583-745 (762)
193 COG4535 CorC Putative Mg2+ and 98.3 4.8E-06 1E-10 72.5 10.0 117 150-293 75-191 (293)
194 cd04597 CBS_pair_DRTGG_assoc2 98.2 3.9E-06 8.4E-11 66.7 6.1 54 235-288 59-112 (113)
195 KOG0474 Cl- channel CLC-7 and 98.1 5.2E-06 1.1E-10 81.6 6.7 144 146-290 584-746 (762)
196 smart00116 CBS Domain in cysta 98.0 2.4E-05 5.1E-10 50.9 5.9 47 326-373 2-48 (49)
197 cd04597 CBS_pair_DRTGG_assoc2 97.9 2.7E-05 5.8E-10 61.8 6.6 50 321-371 63-112 (113)
198 smart00116 CBS Domain in cysta 97.9 5E-05 1.1E-09 49.3 6.2 47 244-290 2-48 (49)
199 KOG0475 Cl- channel CLC-3 and 97.7 0.0004 8.6E-09 68.8 11.8 127 244-373 558-694 (696)
200 COG4175 ProV ABC-type proline/ 97.4 0.0013 2.8E-08 60.6 9.8 169 150-375 214-384 (386)
201 KOG0475 Cl- channel CLC-3 and 97.2 0.005 1.1E-07 61.3 12.1 133 153-290 557-694 (696)
202 TIGR03415 ABC_choXWV_ATP choli 96.9 0.0048 1E-07 59.7 8.9 107 235-375 275-381 (382)
203 KOG0476 Cl- channel CLC-2 and 96.5 0.0085 1.8E-07 60.8 7.5 61 231-291 585-647 (931)
204 COG1125 OpuBA ABC-type proline 96.1 0.091 2E-06 47.4 11.2 117 151-288 186-307 (309)
205 COG4175 ProV ABC-type proline/ 95.1 0.043 9.4E-07 50.8 5.7 88 164-291 296-383 (386)
206 COG1125 OpuBA ABC-type proline 93.8 0.92 2E-05 41.1 10.8 113 242-372 187-308 (309)
207 TIGR03415 ABC_choXWV_ATP choli 92.4 0.3 6.5E-06 47.3 6.2 48 242-291 333-380 (382)
208 PRK11388 DNA-binding transcrip 75.0 10 0.00022 39.6 7.6 97 253-366 61-163 (638)
209 KOG0476 Cl- channel CLC-2 and 67.4 7.6 0.00016 40.4 4.4 53 321-373 593-646 (931)
210 KOG2118 Predicted membrane pro 64.5 11 0.00024 38.0 4.9 114 236-369 206-324 (498)
211 PRK11388 DNA-binding transcrip 60.0 43 0.00093 34.9 8.6 101 164-282 62-162 (638)
212 PF05198 IF3_N: Translation in 56.7 25 0.00055 25.5 4.4 32 265-296 12-43 (76)
213 COG1559 Aminodeoxychorismate l 48.6 2.5E+02 0.0055 26.8 11.3 147 153-349 46-194 (342)
214 PF05198 IF3_N: Translation in 43.3 49 0.0011 24.0 4.2 25 347-372 12-36 (76)
215 KOG2118 Predicted membrane pro 42.4 66 0.0014 32.5 6.4 126 42-202 198-324 (498)
216 PF14827 Cache_3: Sensory doma 32.9 45 0.00097 26.1 2.9 18 266-283 92-109 (116)
217 COG2216 KdpB High-affinity K+ 26.9 87 0.0019 31.6 4.1 37 333-371 413-449 (681)
218 PRK00028 infC translation init 24.2 82 0.0018 27.0 3.1 27 266-292 20-46 (177)
219 COG0290 InfC Translation initi 24.1 1.3E+02 0.0028 25.6 4.1 33 264-296 17-49 (176)
220 PF14044 NETI: NETI protein 23.9 1.5E+02 0.0032 20.2 3.6 28 156-183 3-35 (57)
221 TIGR00168 infC translation ini 23.0 81 0.0018 26.7 2.8 28 266-293 8-35 (165)
222 PF02743 Cache_1: Cache domain 23.0 83 0.0018 22.5 2.6 17 267-283 18-34 (81)
223 PF09308 LuxQ-periplasm: LuxQ, 21.9 74 0.0016 28.6 2.4 18 347-364 129-146 (238)
224 CHL00199 infC translation init 20.9 1.1E+02 0.0023 26.4 3.1 29 266-294 25-53 (182)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-38 Score=303.08 Aligned_cols=303 Identities=30% Similarity=0.543 Sum_probs=261.6
Q ss_pred HHHHHHHHhhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCC
Q 017163 37 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 116 (376)
Q Consensus 37 ~~~~~~~fl~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~ 116 (376)
+...+..|++.++||+.+|.+++++++|...++.+||++|..++.+++|+||..+++|+|++++.||+.++..++..+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~ 134 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS 134 (381)
T ss_pred hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999988874221
Q ss_pred C-CHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEE
Q 017163 117 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 195 (376)
Q Consensus 117 ~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~g 195 (376)
. ..+.+++..+..|++.....+ ....++++.+.|..++.++...+.+++++++||.| .+.+ .+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~ 200 (381)
T KOG1764|consen 135 LDNIEVLEDSQLSKRREVECLLK---------ETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLY 200 (381)
T ss_pred HHHHhhhhhhhccccchhhhhhc---------cccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceee
Confidence 1 123444445555554322211 12345559999999999999999999999999996 4567 8999
Q ss_pred eeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCC
Q 017163 196 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND 275 (376)
Q Consensus 196 iit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g 275 (376)
++|++.|+++++.+.+..+ ...++..++.++.+|+|. .+..+..++++.+|+++|.+++++++||||++|
T Consensus 201 ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g 270 (381)
T KOG1764|consen 201 ILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENG 270 (381)
T ss_pred ehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence 9999999999999887765 457889999999999996 689999999999999999999999999999999
Q ss_pred cEEEEEeHHHHHHHHhccccccccccccc-HHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEe
Q 017163 276 SLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 354 (376)
Q Consensus 276 ~lvGiis~~Di~~~~~~~~~~~~~~~~~~-v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd 354 (376)
+.+|+++..|+..+..++.|.... .+ +.+++..+. .-..++++|.+++||.+++++|..+++||+||||
T Consensus 271 ~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 271 KKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred ceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc
Confidence 999999999999999988887664 55 778776654 2334589999999999999999999999999999
Q ss_pred CCCCeEEEEEeHHHHHHHHh
Q 017163 355 AGSKRVEGIISLSDVFRFLL 374 (376)
Q Consensus 355 ~~~~~~~GvIs~~Dil~~l~ 374 (376)
++|+++|+||++|++.++.
T Consensus 341 -~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 341 -EDGVLVGVISLSDILSYLV 359 (381)
T ss_pred -CCCcEEEEeeHHHHHHHHH
Confidence 5899999999999999985
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.80 E-value=4.4e-19 Score=154.27 Aligned_cols=121 Identities=18% Similarity=0.379 Sum_probs=112.1
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 017163 234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ 313 (376)
Q Consensus 234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~ 313 (376)
.+++++|.++++++.+++|+.+|.++|.++++++.||+|+ ++++|++|.+|+..++.++.+ +..|++
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~------ 238 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSD------ 238 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHH------
Confidence 3578899999999999999999999999999999999985 599999999999999887754 367887
Q ss_pred CCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 314 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 314 ~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
+|.++++++..++.+.+|++.|..+++.||.|+| .+|+++|+||++|||+.+++
T Consensus 239 -------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 239 -------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred -------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHHHHhhc
Confidence 8899999999999999999999999999999999 47999999999999999875
No 3
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.71 E-value=1.9e-16 Score=140.27 Aligned_cols=173 Identities=17% Similarity=0.268 Sum_probs=131.3
Q ss_pred ceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhhhHHH-HHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHH
Q 017163 93 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL 171 (376)
Q Consensus 93 ~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~ 171 (376)
+-+|+ +..|+-..+..+.+.. .++.++++.+--+. ++...+..++.. ..++|+++++++.+++++.+|.++|.
T Consensus 199 ~rvgf-s~~Dld~aL~~~~E~l-DIdrddLe~llr~~elqa~~R~~~~Lt----cadIMSrdVvtv~~~ts~dhA~~ll~ 272 (382)
T COG3448 199 QRVGF-SSEDLDAALQRLGETL-DIDRDDLERLLRETELQALRRRMGELT----CADIMSRDVVTVSTDTSIDHARKLLQ 272 (382)
T ss_pred hccCC-CHHHHHHHHHhcCcee-cCCHHHHHHHHHHHHHHHHHHHhcccc----HHHhcCccceecCCcCChHHHHHHHH
Confidence 44564 7889999998876532 34566666543222 222222222222 34589999999999999999999999
Q ss_pred hCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccCCCceEecCCC
Q 017163 172 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA 251 (376)
Q Consensus 172 ~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~ 251 (376)
+|+++.+||+|+ .. +++|++|++|+++.. +. ...+.++.+ ..++++.+|+.++.|+.+++
T Consensus 273 ~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a----~~------~p~qrlr~~----~~~~vk~imt~~v~tv~pdt 332 (382)
T COG3448 273 EHRIKALPVLDE---HR---RLVGIVTQRDLLKHA----RP------SPFQRLRFL----RPPTVKGIMTTPVVTVRPDT 332 (382)
T ss_pred HcCccccccccc---cc---ceeeeeeHHHHhhcc----Cc------chHHHhhcc----CCCcccccccCcceeecCCC
Confidence 999999999975 44 899999999998722 11 011222222 23578899999999999999
Q ss_pred CHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 252 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 252 ~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
+..+.+-++.+.+.+++||+|++|+++||+|++|++..+.
T Consensus 333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 9999999999999999999999999999999999988553
No 4
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.71 E-value=3e-16 Score=126.54 Aligned_cols=119 Identities=39% Similarity=0.661 Sum_probs=97.0
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+.....++..... ..++.+++.... .|
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~~~~~-------~~ 71 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL---DLTVGEALERRS-------QD 71 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccc---cCCHHHHHhhcc-------cC
Confidence 57789999999999999999999999999999999999999999986644322111 133444322111 44
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|++++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhcC
Confidence 567889999999999999999999999999994 6899999999999864
No 5
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.71 E-value=9.6e-17 Score=139.77 Aligned_cols=120 Identities=19% Similarity=0.328 Sum_probs=106.9
Q ss_pred CCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccc
Q 017163 144 DGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 223 (376)
Q Consensus 144 ~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~ 223 (376)
..++.+|+++++++.+++|+.+|+.++.+++++..||+|+ + +++|++|.+||.+.+...
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g-------------- 230 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG-------------- 230 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC--------------
Confidence 3446689999999999999999999999999999999975 3 799999999999876532
Q ss_pred cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 224 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 224 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
....+|.++|+++++++..++.+.||+++|..+++.++.|+|.+|+++|+||+.|++..+.
T Consensus 231 -------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 231 -------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred -------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 2334677789999999999999999999999999999999999999999999999998553
No 6
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.68 E-value=1.3e-16 Score=141.40 Aligned_cols=127 Identities=19% Similarity=0.391 Sum_probs=108.7
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 314 (376)
Q Consensus 235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 314 (376)
...++|++++++++.++++.+|.++|.+|+++.+||+|++.+++|+++++|+.+-..-+.+.++. ..+
T Consensus 246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr-----------~~~- 313 (382)
T COG3448 246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR-----------FLR- 313 (382)
T ss_pred cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh-----------ccC-
Confidence 45788999999999999999999999999999999999999999999999998855433333221 111
Q ss_pred CCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 315 ANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 315 ~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
..+. ++|+.++.|+.++++..+.+-++.+.+.|.+||+| +.|+++||||.+|++.+++.
T Consensus 314 -~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 314 -PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred -CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHHH
Confidence 1122 39999999999999999999999999999999999 57999999999999998864
No 7
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.65 E-value=1.7e-15 Score=117.84 Aligned_cols=95 Identities=15% Similarity=0.262 Sum_probs=85.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
.++++.+++++.+|++.|.+++++++||+|++ |+++|++|..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 46789999999999999999999999999974 89999999999976221
Q ss_pred CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCC-CeEEEEEeHHHHHHH
Q 017163 322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRF 372 (376)
Q Consensus 322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~-~~~~GvIs~~Dil~~ 372 (376)
+.++.+++++.+|++.|.+++++++||+|+ + |+++|+||.+|++++
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILKF 98 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhcC
Confidence 458999999999999999999999999994 5 899999999999863
No 8
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.64 E-value=3.1e-15 Score=118.99 Aligned_cols=109 Identities=11% Similarity=0.252 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.....+ .+ .+.++.+ +|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-~~-----~~~~v~~-------------~~ 62 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-DY-----ETLKVCE-------------VY 62 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-cc-----cccChhh-------------ee
Confidence 35688999999999999999999999999999999999999999874211 11 1234555 56
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.+|+++|.+++.+++||+|+ +|+++|+||.+|+++
T Consensus 63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~ 110 (111)
T cd04603 63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR 110 (111)
T ss_pred ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence 667889999999999999999999999999994 699999999999986
No 9
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.64 E-value=6.6e-15 Score=117.57 Aligned_cols=112 Identities=16% Similarity=0.286 Sum_probs=94.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
.+.++.+++++.+|++.|.+++...+||+|++|+++|+++..|+.+........ ..+.++.+ +|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~---~~~~~v~~-------------~~ 65 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGP---GCTAPVEN-------------VM 65 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCC---cccCCHHH-------------Hh
Confidence 367889999999999999999999999999999999999999998755321111 11355666 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+|+++
T Consensus 66 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 66 TRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK 113 (114)
T ss_pred cCCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence 66788999999999999999999999999999 4689999999999975
No 10
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.63 E-value=3e-15 Score=121.09 Aligned_cols=119 Identities=18% Similarity=0.391 Sum_probs=100.4
Q ss_pred cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163 236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 315 (376)
Q Consensus 236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 315 (376)
+..+|.++++.+++++++.+|+++|.++++|.+||+++ |+++|-||..++.+...++.. .+ .+..+.+
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e-~i--~~~~vr~-------- 134 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME-SI--RSLRVRE-------- 134 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc-ch--hhhhHHH--------
Confidence 45569999999999999999999999999999999975 999999999999997755532 12 2466776
Q ss_pred CCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 316 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 316 ~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
+|+.++++++++.++..+-..+..++ .+.|++ +|+++||||..||++.+.+
T Consensus 135 -----vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e--~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 135 -----VMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE--NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred -----HhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe--CCceEEEEeHHHHHHHHhc
Confidence 89999999999999998777776664 466776 4999999999999999865
No 11
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=1.5e-14 Score=116.17 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=93.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.+|++.|..++++++||+|++|+++|+++..|+.+....+.. +.+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~----~~~~~~~~-------------~~ 64 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGAD----LQKVPVGV-------------IM 64 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCC----ccCCCHHH-------------Hh
Confidence 56789999999999999999999999999988999999999999886542211 11345665 44
Q ss_pred CC--cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCC--CeEEEEEeHHHHHH
Q 017163 323 GQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~--~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~--~~~~GvIs~~Dil~ 371 (376)
.. ++.++.+++++.+++++|.+++++++||||+++ |+++|+||.+|+++
T Consensus 65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 65 TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 42 688999999999999999999999999999532 69999999999875
No 12
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.61 E-value=8e-15 Score=139.19 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=104.4
Q ss_pred cccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163 234 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 311 (376)
Q Consensus 234 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 311 (376)
.+++++|.+ ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+.+....+. .+.+.++.+
T Consensus 202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~---- 273 (326)
T PRK10892 202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIAD---- 273 (326)
T ss_pred CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHH----
Confidence 467888987 8999999999999999999999988899999999999999999987554321 122356776
Q ss_pred CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|..++.++.+++++.+|++.|.+++++++||+|+ |+++|+||.+|++++
T Consensus 274 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 274 ---------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred ---------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 78888999999999999999999999999999984 899999999999975
No 13
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.61 E-value=5.7e-15 Score=120.03 Aligned_cols=113 Identities=14% Similarity=0.226 Sum_probs=95.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+++++++||+|++|+++|+++.+|++....++.... +.++.+ +|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~----~~~v~~-------------im 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQP----SDPVSK-------------AL 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCC----CCcHHH-------------Hh
Confidence 5778999999999999999999999999999999999999999987554332211 357777 77
Q ss_pred CCcceEecCCCCHHHHHHHH---------hcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERL---------ANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m---------~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
..++.++.+++++.++.+.| ...+.+++||+| ++|+++|+||..|+++++
T Consensus 66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence 78899999999999999954 344678889998 579999999999999875
No 14
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=2.8e-14 Score=113.80 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=94.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
++.++.+++++.+|++.|.+++.+.+||+|++ |+++|+++.+|+++.+..+.... .+.++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------~ 65 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDP---DRVNVYE-------------I 65 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCC---CccCHHH-------------H
Confidence 46789999999999999999999999999987 99999999999988543321111 1245666 5
Q ss_pred CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
|..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA 114 (114)
T ss_pred hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence 666789999999999999999999999999999 4 999999999999863
No 15
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.60 E-value=3e-14 Score=113.77 Aligned_cols=112 Identities=20% Similarity=0.346 Sum_probs=94.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.....++... ...++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~----~~~~~~~-------------~~ 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAG----EPSAVDE-------------VA 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccccc----ccccHHH-------------hc
Confidence 466889999999999999999999999999999999999999998865432211 1234555 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCC--CeEEEEEeHHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFRF 372 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~--~~~~GvIs~~Dil~~ 372 (376)
..++.+|.+++++.++++.|.+++.+++||+|+ . |+++|+||.+|++++
T Consensus 65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence 667899999999999999999999999999994 5 799999999999863
No 16
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.59 E-value=3.2e-14 Score=115.07 Aligned_cols=117 Identities=21% Similarity=0.370 Sum_probs=95.7
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc------ccccccHHHHHhcCCCC
Q 017163 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI------HLDEMNIHQALQLGQDA 315 (376)
Q Consensus 242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~------~~~~~~v~~~l~~~~~~ 315 (376)
+++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|++........... .....++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-------- 73 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD-------- 73 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence 367889999999999999999999999999988999999999999875543221100 001123333
Q ss_pred CCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 316 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 316 ~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..|++++
T Consensus 74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA 124 (124)
T ss_pred -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence 6667899999999999999999999999999999 47999999999999863
No 17
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.59 E-value=9.1e-15 Score=140.54 Aligned_cols=190 Identities=18% Similarity=0.230 Sum_probs=135.6
Q ss_pred CCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcc-ccccccc-------ccccc
Q 017163 159 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP-ILQQPVS-------SIQLG 230 (376)
Q Consensus 159 ~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~-~~~~~i~-------~l~i~ 230 (376)
....+.....++.+++.++.-+... + .++..+..+.+.....++ .....+.. .+.+.++ +-...
T Consensus 73 ~~gdlFg~~~l~~~~~~~~~~~aee---d----sl~y~lp~s~F~ql~~~n-~~f~~ff~~~~akR~~~~~~~~~eq~~~ 144 (610)
T COG2905 73 AAGDLFGFSSLFTELNKQRYMAAEE---D----SLCYLLPKSVFMQLMEEN-PEFADFFLRSLAKRLRDIADRLAEQGES 144 (610)
T ss_pred ccCccccchhhcccCCCcceeEeec---c----ceEEecCHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3344455555556666666655532 2 477777666554443322 11110000 0111111 10111
Q ss_pred -ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 017163 231 -TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL 309 (376)
Q Consensus 231 -~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l 309 (376)
....++++++..+++++++.+++.+|.+.|.+.|++++.++++++...||+|++|+...+-...... ..+|++
T Consensus 145 e~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~----~~~V~e-- 218 (610)
T COG2905 145 EFILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK----TQKVSE-- 218 (610)
T ss_pred hHHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc----ccchhh--
Confidence 1224678889999999999999999999999999999999999999999999999998554222111 356666
Q ss_pred hcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 310 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 310 ~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
+|+.|++++..++.+.+|+-+|..++++||||.++ |+++|+||.+||++.+-.
T Consensus 219 -----------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 219 -----------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred -----------hhccCceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhCC
Confidence 89999999999999999999999999999999985 999999999999998753
No 18
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.58 E-value=2.1e-14 Score=136.02 Aligned_cols=120 Identities=13% Similarity=0.182 Sum_probs=104.8
Q ss_pred cccccccCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163 234 PRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 311 (376)
Q Consensus 234 ~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 311 (376)
.+|+++|.++ +.++++++++.+|++.|.+++.+.+||+|++|+++|+++.+|+.+....+... +.++.+
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~-----~~~v~~---- 267 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGAL-----TTPVNE---- 267 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCc-----CCcHHH----
Confidence 4678889988 99999999999999999999999999999999999999999998755432211 245666
Q ss_pred CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|.+++.++.+++++.+|++.|.++++.++|||| ++|+++|+||..|++++
T Consensus 268 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 268 ---------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA 318 (321)
T ss_pred ---------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence 7778899999999999999999999999999999 46899999999999975
No 19
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=7.9e-14 Score=110.58 Aligned_cols=112 Identities=21% Similarity=0.401 Sum_probs=94.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.+++++.++.++++.|.+++.+.+||+|++++++|+++..|+.......... ..+.++.+ +|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~---~~~~~~~~-------------~~ 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGAS---ALDTPVSE-------------IM 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCC---ccccCHHH-------------hc
Confidence 467889999999999999999999999999889999999999998755432211 01245666 56
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..|++++
T Consensus 66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence 66788999999999999999999999999999 4 899999999999864
No 20
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=3.1e-14 Score=115.76 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=93.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHH---HHHhcCCCCCCCc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH---QALQLGQDANPSL 319 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~---~~l~~~~~~~~~~ 319 (376)
.+.++++++++.+|++.|.+++++++||+|++|+++|+++..|++....++.... ..+.. +...... ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~ 74 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFT---DSD 74 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcc---ccc
Confidence 4678999999999999999999999999999999999999999988654322110 00100 0000000 001
Q ss_pred ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 320 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 320 ~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..|..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+|+++
T Consensus 75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence 14567899999999999999999999999999999 4699999999999986
No 21
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=4.7e-14 Score=109.26 Aligned_cols=95 Identities=16% Similarity=0.368 Sum_probs=85.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 567899999999999999999999999999999999999999997621
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
.+.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+|++++
T Consensus 50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP 96 (96)
T ss_pred --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 155899999999999999999999999999 46899999999999863
No 22
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=7e-14 Score=113.14 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=91.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+....... +......+.. ..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~ 73 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL-DPLYPIPLRD-------LTI 73 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccch-hhhhhhhhhh-------ccc
Confidence 56789999999999999999999999999987 99999999999988553321110000 0000000000 014
Q ss_pred CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHH
Q 017163 322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 370 (376)
Q Consensus 322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil 370 (376)
|..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+|+-
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~ 121 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR 121 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence 6678899999999999999999999999999994 68999999999973
No 23
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=1.8e-13 Score=108.19 Aligned_cols=108 Identities=20% Similarity=0.430 Sum_probs=93.3
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
+++.++.++.++.++++.|.+++.+.+||+|++|+++|+++..|+++....+. .++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~-------------~ 60 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVED-------------I 60 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHH-------------h
Confidence 35778999999999999999999999999998999999999999987554221 23444 5
Q ss_pred CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
|..++.++..++++.++++.|.+++.+.+||++ ++|+++|+||..|+++
T Consensus 61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~ 109 (110)
T cd04605 61 MTRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK 109 (110)
T ss_pred cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence 556788999999999999999999999999999 4699999999999975
No 24
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.1e-13 Score=111.60 Aligned_cols=116 Identities=19% Similarity=0.322 Sum_probs=95.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-----ccccccHHHHHhcCCCCCC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----HLDEMNIHQALQLGQDANP 317 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-----~~~~~~v~~~l~~~~~~~~ 317 (376)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+............ .....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 71 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE---------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------
Confidence 46789999999999999999999999999988999999999999886543221100 001234454
Q ss_pred CcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 318 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 318 ~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|..++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..|++++
T Consensus 72 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 72 ---VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLRL 122 (122)
T ss_pred ---hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhcC
Confidence 55667889999999999999999999999999994 6899999999999864
No 25
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=5.9e-14 Score=109.16 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=84.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
.++++++++++.+|++.|.+++++.+||+|+ ++| +++|++|..|+.+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Givt~~Dl~~~~~------------------------- 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ---QFVGMLTITDFILILR------------------------- 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC---EEEEEEEHHHHhhhee-------------------------
Confidence 4788999999999999999999999999964 236 8999999999976220
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~ 288 (376)
+.++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|+..
T Consensus 52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 5689999999999999999999999999987 99999999999864
No 26
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=1.5e-13 Score=109.32 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=93.0
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC
Q 017163 244 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 323 (376)
Q Consensus 244 ~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~ 323 (376)
..++.+++++.+|++.|.+.+.+.++|+|++|+++|+++.+|+.....++... +.++.+ +|.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~-----~~~v~~-------------~~~ 65 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL-----DDPVSE-------------VMN 65 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCc-----CCCHHH-------------hhc
Confidence 56789999999999999999999999999999999999999998755432211 235666 555
Q ss_pred CcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 324 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 324 ~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
.++.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+|++.
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 112 (113)
T cd04607 66 RNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS 112 (113)
T ss_pred CCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence 6788999999999999999999999999999 4699999999999974
No 27
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.2e-13 Score=110.25 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=92.0
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-ccccccHHHHHhcCCCCCCCccc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-HLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
.+.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+.+.......... .+.+.++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~-------------~ 68 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVID-------------V 68 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH-------------H
Confidence 46789999999999999999999999999989999999999999886543221110 000234555 5
Q ss_pred CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
|..++.++.+++++.+|++.|.+.+ .+||+| ++|+++|+||..|++++
T Consensus 69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA 116 (116)
T ss_pred hcCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence 6667889999999999999998865 599999 47999999999999864
No 28
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.8e-13 Score=108.51 Aligned_cols=110 Identities=18% Similarity=0.355 Sum_probs=94.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.+..+... +.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~-----~~~v~~-------------~~ 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDL-----DTPVSE-------------IM 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCC-----ccCHHH-------------hc
Confidence 466889999999999999999999999999889999999999998865543211 245555 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++..++++.++++.|.+++...+||+| ++|++.|++|.+|+++
T Consensus 64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR 111 (112)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence 66788999999999999999999999999999 4699999999999975
No 29
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=7.3e-14 Score=111.33 Aligned_cols=109 Identities=22% Similarity=0.340 Sum_probs=90.3
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 243 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~-i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
++.++++++++.+|++.|.+++ .+.+||+|++|+++|+++..|+.....+... +.++.+ +
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~------~~~v~~-------------~ 62 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA------QTTVIQ-------------V 62 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhcc------ccchhh-------------h
Confidence 4678899999999999997775 8999999988999999999999886542211 245555 3
Q ss_pred CC--CcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 322 NG--QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 322 m~--~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
|. .++.++.+++++.+|++.|.+++.+++||+|+ +|+++|++|..||++
T Consensus 63 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 63 MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 32 23668999999999999999999999999994 689999999999875
No 30
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=8.2e-14 Score=110.83 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=94.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.+|.+.|.+.+.+.+||+|++|+++|+++..|+.+.+....+.. ..+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~--~~~~~v~~-------------~~ 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC--DGVATVRD-------------IM 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc--CCCccHHH-------------Hh
Confidence 4678899999999999999999999999999999999999999987554332211 01245565 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA 114 (114)
T ss_pred ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence 56788999999999999999999999999999 4 899999999999863
No 31
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=1.4e-13 Score=113.62 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=93.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc-------------------cccc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH-------------------LDEM 303 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~-------------------~~~~ 303 (376)
++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..|++............ ..+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 466889999999999999999999999999999999999999998865422111000 0012
Q ss_pred cHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 304 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 304 ~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
++.+ +|..++.++.+++++.++++.|.+++.+++||++ + |+++|+||.+|++++
T Consensus 82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICRE 135 (135)
T ss_pred cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhhC
Confidence 3333 6777888999999999999999999999999999 4 899999999999863
No 32
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.4e-13 Score=112.20 Aligned_cols=117 Identities=23% Similarity=0.379 Sum_probs=93.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-cccc--------cccccHHHHHhcCC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIH--------LDEMNIHQALQLGQ 313 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~~--------~~~~~v~~~l~~~~ 313 (376)
++.++.+++++.+|+++|.+.+.+.+||+|++|+++|++|..|+..++....+ .... ..+.++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------ 75 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence 46688999999999999999999999999999999999999999875432111 0000 00122333
Q ss_pred CCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeC-CCCeEEEEEeHHHHHHH
Q 017163 314 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFRF 372 (376)
Q Consensus 314 ~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~-~~~~~~GvIs~~Dil~~ 372 (376)
+|..++.++.+++++.++++.|.+++.+.+||++. ++|+++|+||.+|++++
T Consensus 76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 67778999999999999999999999999999852 46899999999999863
No 33
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.7e-13 Score=108.55 Aligned_cols=109 Identities=17% Similarity=0.332 Sum_probs=93.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+..+...... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~-------------~~ 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFN-------------IV 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHH-------------Hh
Confidence 46788999999999999999999999999989999999999999875432211 1245665 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.+|++.|.+++.+++||+| + |+++|+||..|++.
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD 110 (111)
T ss_pred cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence 56788999999999999999999999999999 4 89999999999874
No 34
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.4e-13 Score=110.84 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=92.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++++.+++++.+|++.|.+++.+++||+++ +| +++|+++..|++.++..+... ....++...-
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~~---- 65 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEAL---- 65 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHHH----
Confidence 6789999999999999999999999999975 56 899999999999865322110 0011111100
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus 66 --~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 66 --ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred --hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 011234567889999999999999999999999999998899999999999875
No 35
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.54 E-value=3e-14 Score=144.39 Aligned_cols=283 Identities=13% Similarity=0.157 Sum_probs=178.7
Q ss_pred CCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhhhH
Q 017163 48 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 127 (376)
Q Consensus 48 ~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~~i 127 (376)
.++.|++- .++++++.++++.+|++.|.++++..+||.|++ ++++|++|..|+...+...... ..+. .+ ..++
T Consensus 68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~-~~~~--~~-~~t~ 140 (546)
T PRK14869 68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP-EILS--KS-PTSL 140 (546)
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch-hhhh--hc-CCCH
Confidence 56777773 579999999999999999999999999999976 5699999999999866643210 0000 00 0011
Q ss_pred HHHHHHHHhhhcccc--c------C------------CCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCC-
Q 017163 128 SAWKVGKLQLNLKRQ--M------D------------GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP- 186 (376)
Q Consensus 128 ~~~~~~~~~~~~~~~--~------~------------~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~- 186 (376)
..+.+ .++.... . . ..+......++.+... .+....+.+.+++.++|+...+-
T Consensus 141 ~~i~~---~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~~~~~lIlt~g~~~~ 214 (546)
T PRK14869 141 ENIIR---TLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEAGVRLLIITGGAPVS 214 (546)
T ss_pred HHHHH---hcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHcCCCEEEECCCCCCC
Confidence 11111 0000000 0 0 0001122346666555 34444678889999999865321
Q ss_pred --------CCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccC-CCceEecCCCCHHHHH
Q 017163 187 --------AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSAL 257 (376)
Q Consensus 187 --------~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~ 257 (376)
.. .+.++.|..|.......-. .. ..+.++|+ +++.++++++++.++.
T Consensus 215 ~~v~~la~~~---~i~ii~t~~dt~~t~~~l~---------~~------------~~V~~iM~~~~~~~~~~~~~~~~~~ 270 (546)
T PRK14869 215 EDVLELAKEN---GVTVISTPYDTFTTARLIN---------QS------------IPVSYIMTTEDLVTFSKDDYLEDVK 270 (546)
T ss_pred HHHHHHHHhC---CCeEEEecccHHHHHHHhh---------cC------------CCHHHhccCCCcEEECCCCcHHHHH
Confidence 11 3778888888776443211 11 23556698 8899999999999999
Q ss_pred HHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH---HhcCC----CCCCCc-ccCCCcceEe
Q 017163 258 ALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA---LQLGQ----DANPSL-GFNGQRCQMC 329 (376)
Q Consensus 258 ~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~---l~~~~----~~~~~~-~im~~~~~~~ 329 (376)
+.|.+++++.+||+|++|+++|++|++|++........- ++.....+. +.... -+..+. +++...++.+
T Consensus 271 ~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iL---VD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~ 347 (546)
T PRK14869 271 EVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVIL---VDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFF 347 (546)
T ss_pred HHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEE---EcCccccccccchhhceEEEEecCCccCCCCCCCCcEE
Confidence 999999999999999999999999999999854321100 000000010 00000 000011 2455554444
Q ss_pred ---cCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 330 ---LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 330 ---~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
....+..-+.+.|.+.++...|++.. ..+.||+|-++.|++
T Consensus 348 ~~~~~gst~tiv~~~~~~~~i~~~~~ia~--~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 348 RNEPVGSTSTIVARMYRENGIEPSPEIAG--LLLAAILSDTLLFKS 391 (546)
T ss_pred EeeeeeeHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCccC
Confidence 44677778899999999988888763 568888888777653
No 36
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.54 E-value=1.6e-13 Score=107.71 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=90.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.+++++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+..... .++.+ +|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~-------------~~ 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGD-------------HA 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhh-------------hc
Confidence 4668899999999999999999999999998999999999999986321 13444 45
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
...+.++.+++++.++++.|.+++...+||+| ++|+++|+||..|+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIAD 105 (106)
T ss_pred ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence 55678899999999999999999999999999 4689999999999975
No 37
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=2e-13 Score=108.46 Aligned_cols=111 Identities=20% Similarity=0.347 Sum_probs=93.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+......+.. +.+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~~ 64 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVRE-------------VM 64 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHH-------------hc
Confidence 35678999999999999999999999999988999999999999874332211 11245555 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++..++++.++++.|.+++.+++||+| ++|+++|++|..|+++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 65 NSPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR 112 (113)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 4689999999999975
No 38
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.4e-13 Score=111.49 Aligned_cols=116 Identities=17% Similarity=0.289 Sum_probs=94.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccc-c------ccccccHHHHHhcCCC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQ-I------HLDEMNIHQALQLGQD 314 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~-~------~~~~~~v~~~l~~~~~ 314 (376)
++.++.++.++.+|+++|.+.+.+.+||+|++ |+++|+++..|+.....++.... . ...+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS------- 74 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH-------
Confidence 46788999999999999999999999999987 99999999999988664322110 0 000123343
Q ss_pred CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|..++.++.+++++.++++.|.+.+.+.++|+| ++|+++|+||..||+++
T Consensus 75 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 75 ------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA 125 (125)
T ss_pred ------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence 5556799999999999999999999999999999 46899999999999874
No 39
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.6e-13 Score=108.63 Aligned_cols=109 Identities=21% Similarity=0.376 Sum_probs=93.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+.. +.++.+ +|
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~ 62 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP------DAPVRG-------------VM 62 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC------CCcHHH-------------Hh
Confidence 45678999999999999998899999999988999999999999886543221 234555 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++..++++.++++.|.+++.+++||+| +.|+++|++|..|+..
T Consensus 63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~ 110 (111)
T cd04639 63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGE 110 (111)
T ss_pred cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 4689999999999975
No 40
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.2e-13 Score=111.25 Aligned_cols=116 Identities=16% Similarity=0.294 Sum_probs=93.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc----ccccccHHHHHhcCCCCCC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI----HLDEMNIHQALQLGQDANP 317 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~----~~~~~~v~~~l~~~~~~~~ 317 (376)
++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|++........ ... .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK---------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------
Confidence 56789999999999999999999999999989999999999999874211100 000 001233443
Q ss_pred CcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 318 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 318 ~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|..++.++..++++.++++.|.+++.+++||+|+ +|+++|++|..|++++
T Consensus 72 ---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 72 ---IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLKA 122 (122)
T ss_pred ---HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhcC
Confidence 56667899999999999999999999999999994 6999999999999863
No 41
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.53 E-value=2.4e-13 Score=107.99 Aligned_cols=111 Identities=20% Similarity=0.346 Sum_probs=95.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.....++... ...++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~----~~~~v~~-------------~~ 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLY----DLVVASD-------------IM 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccccc----ccEEHHH-------------hc
Confidence 567899999999999999999999999999889999999999998765432211 1246666 56
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCC-CCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG-SKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~-~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.++++.|...+.+++||+| + .|+++|++|..|+++
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLS 113 (114)
T ss_pred cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhc
Confidence 67789999999999999999999999999998 4 589999999999985
No 42
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.53 E-value=7.5e-14 Score=137.67 Aligned_cols=172 Identities=13% Similarity=0.161 Sum_probs=134.0
Q ss_pred cccCCCCCCCCCCceEeCCCCCHHHHHHHHHh-----CCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC
Q 017163 141 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS 215 (376)
Q Consensus 141 ~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~-----~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~ 215 (376)
|..+.+|++|..+++++++++++.+|++.|.+ ++...++|+|+ ++ +++|+++.+|++.. .
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~--- 192 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K--- 192 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C---
Confidence 77888899999999999999999999999975 45678898865 46 89999999998641 0
Q ss_pred CccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc
Q 017163 216 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 295 (376)
Q Consensus 216 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~ 295 (376)
... .++++|.+++.++++++++.+|++.|.+++...+||||++|+++|++|.+|++..+.+..
T Consensus 193 ----~~~------------~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~- 255 (449)
T TIGR00400 193 ----PEE------------ILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA- 255 (449)
T ss_pred ----CCC------------cHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-
Confidence 011 245558888999999999999999999999999999999999999999999998765321
Q ss_pred cccccccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 296 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 296 ~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
.++ +|.....++.+++++.+++.+|.+++...|+|.- +.|++| ..++..
T Consensus 256 ---------~ed-------------~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~ 304 (449)
T TIGR00400 256 ---------TED-------------FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN 304 (449)
T ss_pred ---------HHH-------------HHHhcCCCCCcchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence 133 2222344455678889999999999988877652 455555 544443
No 43
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=2e-13 Score=111.97 Aligned_cols=115 Identities=17% Similarity=0.310 Sum_probs=93.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc----------------cccccHH
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH----------------LDEMNIH 306 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~----------------~~~~~v~ 306 (376)
++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+............. +...++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 467899999999999999999999999999999999999999998865432110000 0000222
Q ss_pred HHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 307 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 307 ~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+ +|.+++..+.+++++.++++.|.+.+.+++||+| + |+++|++|.+|++++
T Consensus 82 ~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 82 E-------------IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS 132 (132)
T ss_pred H-------------hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence 2 5667789999999999999999999999999999 5 999999999999874
No 44
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=1.7e-13 Score=108.20 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=92.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..|+.... .+.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~-------------~~ 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEK-------------VM 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHH-------------Hh
Confidence 577899999999999999999999999999999999999999997521 0245666 45
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.++++.|.+++.+.+||+| ++|+++|++|..|+++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~ 107 (108)
T cd04596 60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 4799999999999986
No 45
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.53 E-value=1.4e-13 Score=135.52 Aligned_cols=115 Identities=15% Similarity=0.225 Sum_probs=101.4
Q ss_pred cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163 236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 315 (376)
Q Consensus 236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 315 (376)
+.++|.++++++.+++++.+|+++|.+++++++||+|++++++|++|.+|+.... . ..++.+
T Consensus 91 v~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~-------~---~~~V~d-------- 152 (479)
T PRK07807 91 SRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD-------R---FTQVRD-------- 152 (479)
T ss_pred cccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc-------c---CCCHHH--------
Confidence 4456888999999999999999999999999999999999999999999985320 0 235666
Q ss_pred CCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163 316 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374 (376)
Q Consensus 316 ~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~ 374 (376)
+|..++.++.+++++.+|++.|.+++++++|||| ++|+++|+||.+||+++..
T Consensus 153 -----iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 153 -----VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRATI 205 (479)
T ss_pred -----hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence 7778899999999999999999999999999999 4799999999999998754
No 46
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=1.6e-13 Score=112.96 Aligned_cols=115 Identities=23% Similarity=0.386 Sum_probs=93.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc------ccc------------ccccc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA------QIH------------LDEMN 304 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~------~~~------------~~~~~ 304 (376)
++.++.+++++.++++.|.+++..++||+|++|+++|+++..|+......+... ... ....+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK 82 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence 577899999999999999999999999999889999999999998754322100 000 00122
Q ss_pred HHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 305 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 305 v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+.+ +|..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus 83 v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~~ 135 (135)
T cd04586 83 VAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLRA 135 (135)
T ss_pred HHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhcC
Confidence 222 5667789999999999999999999999999999 3 999999999999863
No 47
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.51 E-value=3.1e-13 Score=107.28 Aligned_cols=111 Identities=17% Similarity=0.306 Sum_probs=92.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..|++.......... ...++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------i~ 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDP---ESTLVER-------------VM 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCc---CcCCHHH-------------hc
Confidence 4678899999999999999999999999987 99999999999985332221111 0145565 66
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.++++.|..++.+++||+| ++|+++|+||..|++.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence 67788999999999999999999999999999 4699999999999975
No 48
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=2.3e-13 Score=110.73 Aligned_cols=112 Identities=21% Similarity=0.387 Sum_probs=88.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH-----HhcccccccccccccHHHHHhcCCCCCC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL-----AKDKAYAQIHLDEMNIHQALQLGQDANP 317 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~-----~~~~~~~~~~~~~~~v~~~l~~~~~~~~ 317 (376)
++.++..++++.+|++.|.+++...+||+|++|+++|+++..|+... ..++ + ..+.+.++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~-~--~~~~~~~v~~---------- 68 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEG-G--ISRSELTVAD---------- 68 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHc-C--CCchheEHHH----------
Confidence 46789999999999999999999999999988999999999999852 1111 0 0111345666
Q ss_pred CcccCCCcceEe------cCCCCHHHHHHHHhcCCCcEEEEEeCCC-CeEEEEEeHHHHHH
Q 017163 318 SLGFNGQRCQMC------LRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFR 371 (376)
Q Consensus 318 ~~~im~~~~~~~------~~~~tl~~a~~~m~~~~~~~l~VVd~~~-~~~~GvIs~~Dil~ 371 (376)
+|..+...+ .+++++.++++.|.+++.+++||+|+ + |+++|+||++|+++
T Consensus 69 ---im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~ 125 (126)
T cd04640 69 ---VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR 125 (126)
T ss_pred ---hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence 554444333 36899999999999999999999994 5 79999999999986
No 49
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.51 E-value=5e-13 Score=105.81 Aligned_cols=109 Identities=20% Similarity=0.333 Sum_probs=92.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.+++++.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.......... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~ 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD----PDTPVSE-------------VM 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC----ccCCHHH-------------Hh
Confidence 5678999999999999999999999999987 9999999999998744322111 0245565 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.++++.|.+++.+++||++ + |+++|++|..|+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~ 110 (111)
T cd04800 64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR 110 (111)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 4 89999999999985
No 50
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.51 E-value=5.2e-13 Score=105.79 Aligned_cols=110 Identities=17% Similarity=0.270 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
+++++++++++.++++.|.+.+.+.++|+|+ |+++|+++..|+......+... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~ 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLP----SSTPVGE-------------IA 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCC----CCCCHHH-------------Hh
Confidence 4568899999999999999999999999998 8999999999998755432211 1345666 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
..++.++.+++++.++++.|.+++.+++||+|+ |+++|+||..|+++|
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhcC
Confidence 567889999999999999999999999999994 899999999999864
No 51
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=3.3e-13 Score=109.15 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=93.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.+|++.|.+++++++||+|+ .++ +++|+++..|+++++................++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~-------- 68 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL-------- 68 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence 5778899999999999999999999999975 226 799999999999876543221100000000000
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
...+.|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+..
T Consensus 69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 112346678899999999999999999999999999998999999999999853
No 52
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=2.8e-13 Score=107.58 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=90.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..|+.+... .. ....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~---~~------~~~~---------- 56 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGP---ND------YETL---------- 56 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhcc---cc------cccc----------
Confidence 3578899999999999999999999999975 56 8999999999976211 00 0011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 57 --~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 57 --KVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred --ChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 234457778889999999999999999999999999998899999999999875
No 53
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.51 E-value=5.6e-13 Score=105.51 Aligned_cols=108 Identities=16% Similarity=0.359 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
++.++.+++++.+|.+.|.+.+.+++||+|++ |+++|+++..|+......+.. ..++.. +
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~-------------~ 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRD-------------L 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHH-------------H
Confidence 46789999999999999999999999999988 999999999999986643221 123333 3
Q ss_pred CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
+ .++.++..++++.++++.|.+++.+++||+| ++|+++|+||.+|+++
T Consensus 63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE 110 (111)
T ss_pred h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence 3 3578999999999999999999999999999 4799999999999975
No 54
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=6.3e-13 Score=105.12 Aligned_cols=107 Identities=23% Similarity=0.451 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++..+.++.+|.+.|.+.+.+++||+|+ |+++|+++..|+......+. .+.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~------~~~~~~~-------------~~ 62 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL------GHAPVKD-------------YM 62 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc------ccCcHHH-------------Hh
Confidence 6778999999999999999999999999998 99999999999987653221 1356666 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++..++++.++++.|.+++.+++||+|+ |+++|+||..|+++
T Consensus 63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvvt~~di~~ 109 (110)
T cd04595 63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVED--GRLVGIVTRTDLLR 109 (110)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC--CEEEEEEEhHHhhc
Confidence 567889999999999999999999999999993 89999999999975
No 55
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.50 E-value=1.3e-13 Score=111.75 Aligned_cols=118 Identities=23% Similarity=0.427 Sum_probs=99.9
Q ss_pred CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163 146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 225 (376)
Q Consensus 146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~ 225 (376)
+..+|.++++++.|++++.+|+++|.++|++.+||+++ + +++|-+|..+|.+.+.... ..++
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~-----------e~i~ 128 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGM-----------ESIR 128 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccc-----------cchh
Confidence 34589999999999999999999999999999999965 4 8999999999999765432 1122
Q ss_pred cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
+ -++.++|..++.++++++++....+++..+ .++.|+ ++|+++|+||+.|+.++..
T Consensus 129 ~-------~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 129 S-------LRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred h-------hhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHh
Confidence 2 257788999999999999999888888765 468888 7999999999999999764
No 56
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.50 E-value=6.5e-13 Score=104.94 Aligned_cols=108 Identities=24% Similarity=0.373 Sum_probs=92.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+++....+.. ..++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~ 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKD-------------VM 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHH-------------Hh
Confidence 5678899999999999999999999999998 999999999999886543211 134555 45
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.++++.|.+.+.+.+||+| +.|+++|+||..|+++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR 109 (110)
T ss_pred cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence 56788999999999999999999999999999 4689999999999975
No 57
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.50 E-value=4.7e-13 Score=106.32 Aligned_cols=111 Identities=15% Similarity=0.301 Sum_probs=94.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..++..+...... ....++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~-------------~~ 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVAD-------------VM 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHH-------------hh
Confidence 46678999999999999998889999999988999999999999987653221 11235666 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.++++.|..++.+.+||+|+ +|+++|+||..||++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 66 TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 567889999999999999999999999999994 699999999999986
No 58
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.50 E-value=1.1e-12 Score=130.38 Aligned_cols=220 Identities=18% Similarity=0.241 Sum_probs=148.6
Q ss_pred eecccCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCC
Q 017163 84 VPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 160 (376)
Q Consensus 84 ~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~ 160 (376)
.|++.+. .+-+|..++...+......+ .+++.++... .++..+.. +..|..+++++.++
T Consensus 42 ~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~----~I~~vk~~----------~dim~~~~v~i~~~ 103 (486)
T PRK05567 42 IPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAE----EVRKVKRS----------ESGVVTDPVTVTPD 103 (486)
T ss_pred cCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHH----HHHHhhhh----------hhcccCCCeEeCCC
Confidence 7888653 24458888887776554322 2222222111 11111111 23677899999999
Q ss_pred CCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccccccccc
Q 017163 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEAN 240 (376)
Q Consensus 161 ~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m 240 (376)
+++.+|+++|.+++++++||+|+ ++ +++|+++.+|+.... . ... .+.++|
T Consensus 104 ~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~-----~-------~~~------------~V~dim 153 (486)
T PRK05567 104 TTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET-----D-------LSQ------------PVSEVM 153 (486)
T ss_pred CCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc-----c-------CCC------------cHHHHc
Confidence 99999999999999999999975 56 899999999985410 0 111 234457
Q ss_pred C-CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 017163 241 G-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 319 (376)
Q Consensus 241 ~-~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 319 (376)
. ++++++.+++++.++++.|.+++++.+||+|++|+++|++|.+|+++.... ... + .+ ....
T Consensus 154 ~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~---p~a-----~-~d-------~~g~- 216 (486)
T PRK05567 154 TKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEF---PNA-----C-KD-------EQGR- 216 (486)
T ss_pred CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhC---CCc-----c-cc-------cCCC-
Confidence 6 688999999999999999999999999999999999999999999985421 100 0 00 0000
Q ss_pred ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 320 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 320 ~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
++-.......+ .-.+.++.|.+.+++. .++|..+|+..|+++..+.++.
T Consensus 217 -l~V~aai~~~~--~~~e~a~~L~~agvdv-ivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 217 -LRVGAAVGVGA--DNEERAEALVEAGVDV-LVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred -EEEEeecccCc--chHHHHHHHHHhCCCE-EEEECCCCcchhHHHHHHHHHh
Confidence 00001112222 2278888999999995 4777445888888877776664
No 59
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=5.1e-13 Score=106.53 Aligned_cols=110 Identities=18% Similarity=0.314 Sum_probs=89.5
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 243 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~-i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
++.++.++.++.++++.|.+++ ...++|+| +|+++|+++..|++....++.. ..+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~ 63 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGE-------------V 63 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHH-------------h
Confidence 4567899999999999998888 66777776 6999999999999875543211 11245665 5
Q ss_pred CCCcceEecCC--CCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 322 NGQRCQMCLRS--DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 322 m~~~~~~~~~~--~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
|..++.++.++ +++.+|++.|.+++.+++||+|+ +|+++|+||..|+++
T Consensus 64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 55677888877 78999999999999999999994 699999999999986
No 60
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.50 E-value=7.1e-13 Score=104.41 Aligned_cols=106 Identities=19% Similarity=0.306 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+.+..++||+|++|+++|+++..|+...... ..++.+ +|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~-------------~~ 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLED-------------IM 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhH-------------hh
Confidence 46788999999999999999999999999988999999999999874321 124444 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
...+.++.+++++.++++.|.+++.+++||+| ++|+++|++|..|+++
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence 56788999999999999999999999999999 4689999999999975
No 61
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.50 E-value=5.5e-13 Score=105.38 Aligned_cols=110 Identities=24% Similarity=0.356 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+......+... ..++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~-------------~~ 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA-----TVLVGD-------------VM 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc-----ccCHHH-------------hc
Confidence 5678999999999999999999999999998 9999999999998755432111 123444 56
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
..++.++..++++.++++.|.+++.+.+||+|+ +|+++|+||..|++++
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~~ 111 (111)
T cd04612 63 TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLRA 111 (111)
T ss_pred cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhhC
Confidence 678899999999999999999999999999994 6999999999999863
No 62
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.50 E-value=3.7e-13 Score=125.05 Aligned_cols=121 Identities=12% Similarity=0.353 Sum_probs=101.5
Q ss_pred ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163 235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 311 (376)
Q Consensus 235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 311 (376)
+++++|.+ ++.++..++++.++++.+.+++.+++||++++ ++++|+++.+|++.....+.. ..++.+
T Consensus 68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~---- 137 (292)
T PRK15094 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDK---- 137 (292)
T ss_pred EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHH----
Confidence 45667886 69999999999999999999999999999876 799999999999864432111 123454
Q ss_pred CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhcC
Q 017163 312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 376 (376)
Q Consensus 312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~~ 376 (376)
+|. ++.++.+++++.++++.|.+++.+.++|+| +.|.++|+||+.||+..++|.
T Consensus 138 ---------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 138 ---------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred ---------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhCC
Confidence 443 456899999999999999999999999999 578999999999999999863
No 63
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=4.6e-13 Score=106.84 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=92.2
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccc
Q 017163 154 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 233 (376)
Q Consensus 154 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~ 233 (376)
+.++.+++++.+|++.|.+++...+||+|+ +| +++|+++..++++.+...... ...
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~------------ 58 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCT------------ 58 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc------------
Confidence 567899999999999999999999999975 56 899999999998755321000 011
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
..+.++|..++.++.+++++.+|++.|.+++...+||+|++|+++|+++++|+++
T Consensus 59 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 59 APVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 2344557778999999999999999999999999999998899999999999864
No 64
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=4e-13 Score=108.06 Aligned_cols=114 Identities=16% Similarity=0.346 Sum_probs=92.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc------cccccccHHHHHhcCCCCC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQALQLGQDAN 316 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~------~~~~~~~v~~~l~~~~~~~ 316 (376)
++.++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|+........... ..+...++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD--------- 71 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence 5678899999999999999999999999986 99999999999987544211100 0001223333
Q ss_pred CCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 317 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 317 ~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|..++.++.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY 121 (121)
T ss_pred ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence 5667889999999999999999999999999999 5 999999999999864
No 65
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=8.2e-13 Score=104.72 Aligned_cols=111 Identities=15% Similarity=0.292 Sum_probs=90.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
.+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++..|+.+...+... .+.+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~-------------~~ 64 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRA-------------IM 64 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHH-------------Hh
Confidence 466889999999999999888888887775 5999999999999875542211 111245666 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
..++.++.+++++.+|++.|..++.+++||+| + |+++|+||.+|++++
T Consensus 65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~-~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-G-GTLLGVISFHDVAKA 112 (112)
T ss_pred CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-C-CEEEEEEEHHHhhcC
Confidence 56788999999999999999999999999999 3 899999999999863
No 66
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.49 E-value=1.5e-12 Score=124.68 Aligned_cols=195 Identities=17% Similarity=0.186 Sum_probs=148.7
Q ss_pred EEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhhhHHHHHHHHHhhhc
Q 017163 60 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 139 (376)
Q Consensus 60 vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 139 (376)
.+.+.+..++.+|...|.++++.++||.|.+.+..++++|..-++..+........ ...+-..++..+
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~---~~~~l~~s~~dl--------- 231 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP---LPSLLSKSLSDL--------- 231 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc---cHHHhhCCHHHh---------
Confidence 38999999999999999999999999999887899999999999988876654321 222222232221
Q ss_pred ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccc
Q 017163 140 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI 219 (376)
Q Consensus 140 ~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~ 219 (376)
+......+..+..++++.+|++.|.+++++.+||++. .| ..+|.++..|+........ ...
T Consensus 232 -------~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~------~~~ 292 (381)
T KOG1764|consen 232 -------GIGTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGT------YNN 292 (381)
T ss_pred -------CcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCc------cCc
Confidence 0112447889999999999999999999999999976 55 6799999999977554321 111
Q ss_pred cccc-cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 220 LQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 220 ~~~~-i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
+... +++. . .....-...++++.++.++.+++..|..++++++.|||++|.++|++|.+|++..+.
T Consensus 293 ~~~~~l~~~-----~-~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 293 LDLSCLSEA-----L-SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLV 359 (381)
T ss_pred cchhHHHHH-----h-hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHH
Confidence 2222 2211 0 001112345899999999999999999999999999999999999999999999765
No 67
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.49 E-value=3.6e-13 Score=137.22 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=105.1
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 314 (376)
Q Consensus 235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 314 (376)
+++++|++++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.+...+.... .+.++.+
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~----~~~~v~d------- 516 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDT----TDKTAAD------- 516 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccccc----ccchHHH-------
Confidence 57788999999999999999999999999999999999999999999999998744322110 1234555
Q ss_pred CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCC-CeEEEEEeHHHHHHHHhc
Q 017163 315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~-~~~~GvIs~~Dil~~l~~ 375 (376)
+|.+++.++++++++.+|+++|.+++.+++||||+++ ++++|+||..|+++++..
T Consensus 517 ------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 517 ------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred ------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 6777889999999999999999999999999999532 589999999999998753
No 68
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.49 E-value=1.1e-12 Score=133.11 Aligned_cols=195 Identities=18% Similarity=0.177 Sum_probs=135.9
Q ss_pred CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc--
Q 017163 148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS-- 225 (376)
Q Consensus 148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~-- 225 (376)
++|.++++++.+++++.+|+++|.+++++.+||+|+ +| +++|++|..|+.+++........ ......++.
T Consensus 72 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~~~~~~~--~~~~~~t~~~i 143 (546)
T PRK14869 72 DLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMDILDPEI--LSKSPTSLENI 143 (546)
T ss_pred HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhhcchhh--hhhcCCCHHHH
Confidence 367889999999999999999999999999999975 57 89999999999987764331100 001111111
Q ss_pred --------------------cccccccc-cccccccCCC-ceEecCCCCHHHHHHHHHhCCCCEEEEECCCC--------
Q 017163 226 --------------------SIQLGTWV-PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDND-------- 275 (376)
Q Consensus 226 --------------------~l~i~~~~-~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g-------- 275 (376)
.+.+|.-. ..+.+.+.+. ++.+ .+. .++...+.+.+++++.|+....
T Consensus 144 ~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~-gdr--~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l 220 (546)
T PRK14869 144 IRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIV-GDR--EDIQLAAIEAGVRLLIITGGAPVSEDVLEL 220 (546)
T ss_pred HHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEE-cCc--HHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 11111110 1122234433 4444 332 3445567889999998886432
Q ss_pred ----cEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC-CcceEecCCCCHHHHHHHHhcCCCcEE
Q 017163 276 ----SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRL 350 (376)
Q Consensus 276 ----~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~-~~~~~~~~~~tl~~a~~~m~~~~~~~l 350 (376)
.+.++.|..|.......-.. ..++.+ +|. +++.++.+++++.++.+.|.+++.+++
T Consensus 221 a~~~~i~ii~t~~dt~~t~~~l~~------~~~V~~-------------iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 281 (546)
T PRK14869 221 AKENGVTVISTPYDTFTTARLINQ------SIPVSY-------------IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSY 281 (546)
T ss_pred HHhCCCeEEEecccHHHHHHHhhc------CCCHHH-------------hccCCCcEEECCCCcHHHHHHHHHhcCCCce
Confidence 46677777776664432111 245665 788 789999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEeHHHHHHHH
Q 017163 351 VIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 351 ~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
|||| ++|+++|+||..|+++..
T Consensus 282 PVvd-~~g~lvGiit~~dl~~~~ 303 (546)
T PRK14869 282 PVVD-EDGKVVGVISRYHLLSPV 303 (546)
T ss_pred EEEc-CCCCEEEEEEHHHhhccc
Confidence 9999 579999999999998753
No 69
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.48 E-value=7.3e-13 Score=106.38 Aligned_cols=114 Identities=23% Similarity=0.340 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc------cccccHHHHHhcCCCCC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH------LDEMNIHQALQLGQDAN 316 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~------~~~~~v~~~l~~~~~~~ 316 (376)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+............. ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD--------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence 4678899999999999999999999999987 9999999999998855422111000 00122333
Q ss_pred CCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 317 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 317 ~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
+|..++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..|+++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFR 121 (122)
T ss_pred ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhh
Confidence 6667889999999999999999999999999999 4699999999999986
No 70
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.48 E-value=1.2e-12 Score=103.40 Aligned_cols=109 Identities=22% Similarity=0.306 Sum_probs=93.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..|+.+....+.. .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~-------------~~ 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGE-------------VM 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHH-------------hc
Confidence 4668899999999999999999999999986 999999999999886643321 1355666 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+|+++
T Consensus 63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 567889999999999999999999999999994 689999999999975
No 71
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=7.8e-13 Score=106.86 Aligned_cols=122 Identities=19% Similarity=0.358 Sum_probs=96.2
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
+++.++.+++++.++++.|.+++++++||+++ +| +++|+++..++++++....... ....+. ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~--~~~~~~-------~~~ 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRRP--LRGRLR-------GRD 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccch--hhhhhh-------ccc
Confidence 46788999999999999999999999999975 46 8999999999987654321100 000000 011
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
....+.++|.+.+.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 122455668888999999999999999999999999999998999999999999875
No 72
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=1.3e-12 Score=103.61 Aligned_cols=110 Identities=23% Similarity=0.389 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH-HHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~-~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..|++. ....+.. ....++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~-------------~ 63 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGD-------------V 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHH-------------h
Confidence 5678999999999999999999999999987 99999999999873 3322211 11123555 5
Q ss_pred CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
|...+.++.+++++.++++.|...+.+++||+|+ +|+++|+||..|+++
T Consensus 64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 112 (113)
T cd04622 64 MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR 112 (113)
T ss_pred ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 6667889999999999999999999999999994 699999999999976
No 73
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=7e-13 Score=106.48 Aligned_cols=111 Identities=19% Similarity=0.309 Sum_probs=90.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.+|++.|.+++...+||+|. ++ +++|+++..++++....... ...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~~-------~~~----------- 57 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGAD-------LQK----------- 57 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCCC-------ccC-----------
Confidence 5788999999999999999999999999975 56 79999999999886532110 001
Q ss_pred ccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCC---CcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~---g~lvGiis~~Di~~ 288 (376)
..+.++|.+ ++.++.+++++.+++++|.+++++.+||+|++ |+++|++|++|+.+
T Consensus 58 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 58 -VPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred -CCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 123344653 68899999999999999999999999999877 79999999999865
No 74
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=2.2e-12 Score=102.20 Aligned_cols=110 Identities=15% Similarity=0.314 Sum_probs=91.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|++.....+.... .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~~~~-------------~~ 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKP---REVPVGE-------------VM 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCc---ccCCHHH-------------hc
Confidence 4678899999999999999999999999985 59999999999988543221111 1245565 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.++++.|.+++.+.+||+|+ ++++|+||..|+++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 567889999999999999999999999999994 49999999999975
No 75
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=7e-13 Score=104.78 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=87.5
Q ss_pred ecCCCCHHHHHHHHHhCC-----CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 247 LRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 247 v~~~~~l~~a~~~m~~~~-----i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.+|+... . . +.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~----~---~---~~~v~~-------------~ 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA----D---P---DTPVSD-------------I 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC----C---C---cchHHH-------------H
Confidence 568889999999998877 4789999988999999999998751 0 0 245565 4
Q ss_pred CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163 322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
+..++.++.+++++.++++.|..++.+.+||+| ++|+++|+||..|+++++
T Consensus 59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 59 MDTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI 109 (109)
T ss_pred hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence 556788999999999999999999999999999 469999999999999864
No 76
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.46 E-value=1.5e-12 Score=103.81 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=88.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 319 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 319 (376)
++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+++..|+..... . ..++.+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~------------ 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSE------------ 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHH------------
Confidence 4668899999999999999999999999997 799999999999875321 0 134555
Q ss_pred ccCCCcceEecC--CCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 320 GFNGQRCQMCLR--SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 320 ~im~~~~~~~~~--~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
+|..++.++.. ++++.++++.|..++.+++|||| ++|+++|+||..|+++
T Consensus 62 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~ 113 (114)
T cd04602 62 -VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK 113 (114)
T ss_pred -hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence 55555667766 99999999999999999999999 4799999999999875
No 77
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.46 E-value=1.4e-12 Score=102.83 Aligned_cols=109 Identities=19% Similarity=0.374 Sum_probs=89.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.+|++.|.+++.+.+||+|+ |+++|+++..|+.+...+.... . +.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~-~---~~~~~~-------------~~ 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK-F---SLPVRE-------------VM 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc-c---CcCHHH-------------Hh
Confidence 4678899999999999999999999999997 9999999999999865432211 0 235555 45
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
..++.++..++++.+++++|.+ . +.+|||+ ++|+++|+||.+|+++|
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~-~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVD-EGGKFVGIITRADLLKY 110 (110)
T ss_pred cCCCceeCCCCcHHHHHHHHHh-C-CceeEEe-cCCeEEEEEeHHHhhcC
Confidence 5678899999999999999988 3 3478898 47999999999999875
No 78
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.8e-12 Score=103.30 Aligned_cols=111 Identities=16% Similarity=0.273 Sum_probs=91.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCC-CCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA-GSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~-g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
++..+.+++++.+|++.|.+++.+.+||+++ + + +++|+++..|+++++...... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~--------- 60 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR---RES---DAYGIVTMRDILKKVVAEGRD------PDRV--------- 60 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC---CCC---cEEEEEehHHHHHHHHhCCCC------CCcc---------
Confidence 5788999999999999999999999999975 4 6 899999999998865432110 0011
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.+++++.+|++.|.+++...+||+|+ |+++|+++..|+++
T Consensus 61 ---~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 61 ---NVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred ---CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 234557778999999999999999999999999999987 99999999999864
No 79
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.45 E-value=1.1e-12 Score=103.46 Aligned_cols=106 Identities=20% Similarity=0.387 Sum_probs=89.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++..+.++.++.+.|.+++.+.+||+|++|+++|+++.+|+..... .+.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~-------------~~ 60 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSE-------------VM 60 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHH-------------hc
Confidence 5678899999999999999999999999998899999999999864211 0245666 44
Q ss_pred CCcceEecC-CCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLR-SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~-~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++..+.. ++++.++++.|.+.+.+++||+| ++|+++|+||.+|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK 109 (110)
T ss_pred ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence 445566666 99999999999999999999999 4799999999999985
No 80
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.8e-12 Score=104.45 Aligned_cols=115 Identities=14% Similarity=0.192 Sum_probs=92.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc-cc-----ccccccHHHHHhcCCCCC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QI-----HLDEMNIHQALQLGQDAN 316 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~-~~-----~~~~~~v~~~l~~~~~~~ 316 (376)
++.++.+++++.+|++.|.+.+++.+||+|+ |+++|+++..|+.+........ .. .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ--------- 71 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence 4678999999999999999999999999996 9999999999998754321100 00 000122333
Q ss_pred CCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 317 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 317 ~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|..++.++..++++.++++.|.+++.+++||+| ++|+++|++|+.|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY 122 (122)
T ss_pred ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence 5666788999999999999999999999999999 46899999999999874
No 81
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.44 E-value=3.5e-12 Score=101.73 Aligned_cols=111 Identities=24% Similarity=0.427 Sum_probs=95.0
Q ss_pred cCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 017163 240 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 319 (376)
Q Consensus 240 m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 319 (376)
|...++++.++.++.+|+..|.++++.++||++ .++++|++|.+|+......+.... .++.+
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~~~~-----~~v~~------------ 66 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGGKRL-----LPVKE------------ 66 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccCCcc-----ccHHH------------
Confidence 446789999999999999999999999999996 448999999999999776443321 13555
Q ss_pred ccCCCcceEecCCCCHHHHHHHHhc-CCCcEEEEEeCCCC-eEEEEEeHHHHH
Q 017163 320 GFNGQRCQMCLRSDPLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIISLSDVF 370 (376)
Q Consensus 320 ~im~~~~~~~~~~~tl~~a~~~m~~-~~~~~l~VVd~~~~-~~~GvIs~~Dil 370 (376)
+|..++.++.+++++.++++.|.. ++++++||+|+ ++ +++|++|.+|++
T Consensus 67 -v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~ 117 (117)
T COG0517 67 -VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL 117 (117)
T ss_pred -hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence 677789999999999999999999 79999999995 65 999999999974
No 82
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.44 E-value=2.5e-12 Score=103.34 Aligned_cols=114 Identities=20% Similarity=0.331 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc-c----ccccccHHHHHhcCCCCCC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-I----HLDEMNIHQALQLGQDANP 317 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~-~----~~~~~~v~~~l~~~~~~~~ 317 (376)
++.++++++++.+|++.|.+.+.+++||+|++|+++|+++..|+........... . .....++.+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 71 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE---------- 71 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----------
Confidence 4678899999999999999999999999999899999999999987543211100 0 011234554
Q ss_pred CcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 318 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 318 ~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
+|..++.++..++++.++++.|.+++.+.+||+| + |+++|++|..|+++
T Consensus 72 ---~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 72 ---IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLR 120 (121)
T ss_pred ---HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhc
Confidence 5556788999999999999999999999999999 4 89999999999986
No 83
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.44 E-value=8e-12 Score=123.08 Aligned_cols=206 Identities=12% Similarity=0.135 Sum_probs=139.6
Q ss_pred CeeecccCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeC
Q 017163 82 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG 158 (376)
Q Consensus 82 ~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 158 (376)
...|++.+ -..-+|..++...+...+.-+ .++. +..+.+...... +..+|..+++++.
T Consensus 43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~--------~~~q~~~l~~VK-------v~~iMi~~pvtv~ 103 (479)
T PRK07807 43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIP--------IDVVAEVVAWVK-------SRDLVFDTPVTLS 103 (479)
T ss_pred cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCC--------HHHHHHHHhhcc-------cccccccCCeEEC
Confidence 34788754 234567777776666554111 2332 222222222111 1236788999999
Q ss_pred CCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccccccc
Q 017163 159 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 238 (376)
Q Consensus 159 ~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~ 238 (376)
+++++.+|++.|.+++++.+||+|+ ++ +++|++|.+|+... . ... .+.+
T Consensus 104 ~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~-----~--------~~~------------~V~d 152 (479)
T PRK07807 104 PDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV-----D--------RFT------------QVRD 152 (479)
T ss_pred CCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC-----c--------cCC------------CHHH
Confidence 9999999999999999999999975 56 89999999998421 0 011 2445
Q ss_pred ccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCC
Q 017163 239 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS 318 (376)
Q Consensus 239 ~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 318 (376)
+|..+++++++++++.+|+++|.++++..+||+|++|+++|+||++||++........... ....+..
T Consensus 153 iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~-g~l~V~a----------- 220 (479)
T PRK07807 153 VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAA-GRLRVAA----------- 220 (479)
T ss_pred hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhh-hccchHh-----------
Confidence 5888999999999999999999999999999999999999999999999865432110000 0111222
Q ss_pred cccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCe
Q 017163 319 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 359 (376)
Q Consensus 319 ~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~ 359 (376)
...+ .....+.++.|.+.++.. .++|-.+|.
T Consensus 221 -------av~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 221 -------AVGI--NGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred -------hhcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 1122 233667788888888887 466743443
No 84
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=2.1e-12 Score=99.91 Aligned_cols=94 Identities=13% Similarity=0.238 Sum_probs=83.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++.+.+++++.+|++.|.+++++.+||+|. +| +++|+++.+|+.+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence 5678999999999999999999999999975 56 899999999997611
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++.+++++.+|+++|.+++.+.+||+|++|+++|++|++|+++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1568899999999999999999999999998899999999999874
No 85
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.43 E-value=1e-12 Score=129.99 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=93.3
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcc
Q 017163 244 FAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 320 (376)
Q Consensus 244 ~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~ 320 (376)
..++++++++.+|+++|.+++++.+||+|+ +|+++|++|.+|+.... . ..+.++.+
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-----~---~~~~~V~d------------- 165 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-----M---SLDTKVKD------------- 165 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-----c---CCCCCHHH-------------
Confidence 358999999999999999999999999986 68999999999996421 0 11457777
Q ss_pred cCCC--cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 321 FNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 321 im~~--~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|.. +++++.+++++.+|++.|.++++++||||| ++++++|+||..|+++.
T Consensus 166 IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 166 FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH 218 (502)
T ss_pred HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence 6664 788999999999999999999999999999 47999999999999885
No 86
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=3e-12 Score=100.18 Aligned_cols=103 Identities=16% Similarity=0.276 Sum_probs=89.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++.+++++.++++.|.+++.+.+||+| +|+++|+++..|+.+... +.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~-------------~~ 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVAD-------------AM 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHH-------------Hc
Confidence 466789999999999999999999999998 699999999999976321 234555 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++..++++.++++.|.+++..++||+| + |+++|+||..|++.
T Consensus 58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~ 104 (105)
T cd04599 58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence 56788999999999999999999999999999 4 99999999999873
No 87
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3.8e-12 Score=100.84 Aligned_cols=111 Identities=20% Similarity=0.364 Sum_probs=92.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.++++.|.+++++++||+++ ++ +++|+++..++++++....... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~------~~----------- 58 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGASA------LD----------- 58 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCCc------cc-----------
Confidence 5678899999999999999999999999975 46 8999999999998664321100 01
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
..+.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus 59 -~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 59 -TPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred -cCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 1244557778999999999999999999999999999986 99999999999864
No 88
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=2.6e-12 Score=100.88 Aligned_cols=104 Identities=16% Similarity=0.344 Sum_probs=89.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++.. .. +.++.+ +|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~----~~------~~~~~~-------------~~ 58 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK----DP------DETVEE-------------IM 58 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc----Cc------cccHHH-------------hC
Confidence 5678899999999999998888889999987 999999999999752 00 234555 55
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+|+..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIR 106 (107)
T ss_pred CCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 4699999999999986
No 89
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=3.6e-12 Score=101.31 Aligned_cols=110 Identities=19% Similarity=0.308 Sum_probs=91.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
..+++.+++++.+|++.|.+++.+.++|+++ +| +++|+++.+|+++.+..... ...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~---------- 58 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDD---------- 58 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCC----------
Confidence 3567899999999999999999999999975 56 89999999999875532110 011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus 59 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 59 --PVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred --CHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 234447778889999999999999999999999999998899999999999864
No 90
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.8e-12 Score=104.18 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=92.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
.++.+.+++++.+|++.|.++++..+||+|+ +| +++|+++..|++++......... ....+..++. ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~~~--~~ 69 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLLL----YRTITFKELS--EK 69 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhhc----ccchhhhhhh--hh
Confidence 4678999999999999999999999999975 46 89999999999886532111000 0000000000 00
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.....+.+..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 00112346678899999999999999999999999999998899999999999875
No 91
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.8e-12 Score=101.47 Aligned_cols=109 Identities=20% Similarity=0.427 Sum_probs=91.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.+|++.|.+.+...+||+++ +| +++|+++..++.+++..... ..+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~---------~~~--------- 57 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGGP---------DAP--------- 57 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcCC---------CCc---------
Confidence 5678899999999999998888999999975 56 89999999999886642210 112
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+.++|..++.++.+++++.+|++.|.+++...+||+|++|+++|++|.+|+..
T Consensus 58 ---v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 58 ---VRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred ---HHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 33446678899999999999999999999999999998899999999999864
No 92
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.42 E-value=3e-12 Score=100.35 Aligned_cols=100 Identities=15% Similarity=0.254 Sum_probs=86.4
Q ss_pred eEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCC
Q 017163 245 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ 324 (376)
Q Consensus 245 ~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~ 324 (376)
+++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.... ..++.+ +|..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~-------------~~~~ 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVD-------------YIVR 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhh-------------hhhc
Confidence 36889999999999999999999999997 9999999999997521 123333 4455
Q ss_pred cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 325 RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 325 ~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|+++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence 688999999999999999999999999998 3 89999999999975
No 93
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.42 E-value=5.3e-12 Score=99.18 Aligned_cols=111 Identities=23% Similarity=0.448 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++..++++.++++.|.+++.+.+||+|++++++|+++.+|+............ ..+.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~-------------~~ 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPL----VTVGD-------------VM 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCcc----ccHHH-------------Hh
Confidence 46678999999999999999999999999988999999999999886643222110 11333 44
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++..++++.++++.|...+.+.++|+|+ +|+++|+++..|+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 112 (113)
T cd02205 65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR 112 (113)
T ss_pred cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence 567889999999999999999999999999994 699999999999986
No 94
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.42 E-value=3e-12 Score=124.53 Aligned_cols=118 Identities=12% Similarity=0.251 Sum_probs=101.1
Q ss_pred ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163 235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 311 (376)
Q Consensus 235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 311 (376)
+++++|.+ ++++++.++++.++++.+.+++++++||.+++ ++++|+++.+|++....++ ...+.+
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~---- 259 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQS---- 259 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHH----
Confidence 56777986 79999999999999999999999999999864 6999999999998644211 123444
Q ss_pred CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
+| +++.++++++++.++++.|.+++.|..+|+| |.|.++|+||..||+..++|
T Consensus 260 ---------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 260 ---------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred ---------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence 34 3578999999999999999999999999999 57999999999999999976
No 95
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=4.6e-12 Score=100.04 Aligned_cols=108 Identities=21% Similarity=0.430 Sum_probs=91.6
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
++++++.+++++.+|++.|.+++...+||+++ +| +++|+++..++++.+.... .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~-------- 56 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KS-------- 56 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cC--------
Confidence 46788999999999999999999999999975 56 8999999999987543210 11
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+.++|..++.++.+++++.+|++.|.+++...+||++++|+++|++++.|+.+
T Consensus 57 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 57 ----VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred ----HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 23336668889999999999999999999999999998999999999999865
No 96
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.42 E-value=1.9e-12 Score=119.49 Aligned_cols=113 Identities=17% Similarity=0.292 Sum_probs=97.6
Q ss_pred cccccccCCC-ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163 234 PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 312 (376)
Q Consensus 234 ~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~ 312 (376)
.+++++|.++ +.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+......+.. .+.++.+
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~-----~~~~v~~----- 224 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS-----LKSEVRD----- 224 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc-----ccCcHHH-----
Confidence 3677889888 9999999999999999999999999999999999999999999885432211 1346666
Q ss_pred CCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEe
Q 017163 313 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 365 (376)
Q Consensus 313 ~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs 365 (376)
+|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+|+
T Consensus 225 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~ 268 (268)
T TIGR00393 225 --------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH 268 (268)
T ss_pred --------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence 6777889999999999999999999999999999 4689999985
No 97
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.41 E-value=1.2e-12 Score=106.41 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=92.1
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
++++++.+++++.+|++.|.+++++.+||+|+ ++ +++|+++..++++.+...... ..
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~---------- 58 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PS---------- 58 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CC----------
Confidence 35788999999999999999999999999975 46 799999999998755432111 11
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHH---------hCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163 232 WVPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL 289 (376)
Q Consensus 232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~---------~~~i~~lpVvd~~g~lvGiis~~Di~~~ 289 (376)
..++++|.+++.++.+++++.++.++|. +.+..++||+|++|+++|++|++|++..
T Consensus 59 --~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 59 --DPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred --CcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 2355669999999999999999999653 3367889999988999999999999864
No 98
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.41 E-value=3.6e-12 Score=126.46 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=97.7
Q ss_pred cCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 017163 240 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 316 (376)
Q Consensus 240 m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 316 (376)
|.++++++.+++++.+|+++|.+++++.+||+|+ +|+++|++|.+|+.... ..+.++.+
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~e--------- 167 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSE--------- 167 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHH---------
Confidence 5578899999999999999999999999999987 48999999999996532 11356777
Q ss_pred CCcccCCCc--ceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163 317 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374 (376)
Q Consensus 317 ~~~~im~~~--~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~ 374 (376)
+|..+ +.++.+++++.+|++.|.+++++++|||| ++++++|+||.+||++++.
T Consensus 168 ----IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 168 ----VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred ----HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence 56544 78999999999999999999999999999 4799999999999998863
No 99
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.41 E-value=2.5e-12 Score=126.44 Aligned_cols=113 Identities=12% Similarity=0.167 Sum_probs=98.0
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 017163 237 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 316 (376)
Q Consensus 237 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 316 (376)
.+.|.++++++.+++++.+++++|.+++++.+||+| +++++|++|.+|+... . . ..++.+
T Consensus 91 ~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~------~-~---~~~V~d--------- 150 (475)
T TIGR01303 91 RDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGV------D-R---FTQVRD--------- 150 (475)
T ss_pred hhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcC------C-C---CCCHHH---------
Confidence 345777889999999999999999999999999997 5799999999998431 0 1 235666
Q ss_pred CCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163 317 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374 (376)
Q Consensus 317 ~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~ 374 (376)
+|..+++++.+++++.+|++.|.+++++++|||| ++|+++|+||.+||+++..
T Consensus 151 ----IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 151 ----IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRATI 203 (475)
T ss_pred ----HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHHh
Confidence 7788899999999999999999999999999999 4799999999999998754
No 100
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=2.4e-12 Score=102.49 Aligned_cols=109 Identities=15% Similarity=0.242 Sum_probs=87.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
++.++.+++++.+|++.|.+++ .+.+||+|+ ++ +++|+++..|+++...... ...++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v------- 59 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTV------- 59 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccch-------
Confidence 5678899999999999997775 889999975 56 8999999999988543110 01222
Q ss_pred cccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 232 WVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 232 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.++|.. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 60 -----~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 60 -----IQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred -----hhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 233442 3568999999999999999999999999998899999999999864
No 101
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.41 E-value=5.3e-12 Score=98.99 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=88.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.+|++.|.+++.+.+||+++ +| +++|+++..|+++... .+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~--------------~~--------- 52 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASG--------------GC--------- 52 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhcc--------------cc---------
Confidence 4678899999999999999999999999965 56 8999999999986310 11
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
++++|.+.+.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|++.
T Consensus 53 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 53 ---CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred ---hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 22336667788999999999999999999999999998899999999999864
No 102
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.41 E-value=1.8e-11 Score=120.46 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=95.4
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163 149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 228 (376)
Q Consensus 149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ 228 (376)
.|.++++++.+++++.+|+++|.+++++.+||+|. + +++|++|.+|+... . ...
T Consensus 93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~-----~--------~~~------ 146 (475)
T TIGR01303 93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV-----D--------RFT------ 146 (475)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC-----C--------CCC------
Confidence 56788999999999999999999999999999853 5 79999999998320 0 011
Q ss_pred ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
.+.++|+.+++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++...
T Consensus 147 ------~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 147 ------QVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred ------CHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 244558889999999999999999999999999999999999999999999998654
No 103
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3.9e-12 Score=101.40 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=90.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++++.+++++.+|++.|.+++++.+||+|+ ++ +++|+++..++++++....... .. .+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-----~~-----~~----~ 61 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENLD-----LE-----RL----V 61 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCchh-----HH-----HH----h
Confidence 4678999999999999999999999999975 56 8999999999998764322110 00 00 0
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
...+.++|.+++.++.+++++.+|++.|.+.+ .+||+|++|+++|++|.+|+++
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 12344557778999999999999999998765 5999998999999999999875
No 104
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=7.2e-12 Score=99.27 Aligned_cols=110 Identities=19% Similarity=0.361 Sum_probs=92.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.+|++.|.+.+.+.+||+++ ++ +++|+++..++++++..... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~---------- 57 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDT---------- 57 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------Ccc----------
Confidence 5678899999999999999999999999975 46 89999999999886543211 111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus 58 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 58 --PVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred --CHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 233447778999999999999999999999999999998899999999999864
No 105
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.3e-12 Score=102.19 Aligned_cols=120 Identities=20% Similarity=0.411 Sum_probs=94.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.+|++.|.+.+++.+||+++ +| +++|+++..++++++......... ..... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~~------~~~~~----~~ 65 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNGE------ESLTK----ER 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhccccccccc------ccccc----cc
Confidence 5678999999999999999999999999975 46 899999999999876543221100 00000 01
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
...+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|++.
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 12345567778999999999999999999999999999998899999999999875
No 106
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=7.7e-12 Score=104.15 Aligned_cols=126 Identities=19% Similarity=0.304 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc------ccccccHHHHHhcC---
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI------HLDEMNIHQALQLG--- 312 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~------~~~~~~v~~~l~~~--- 312 (376)
+++++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+.+.+..... ..+ .....++.+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5678999999999999999999999999997 999999999999886543221 000 00001111111000
Q ss_pred ----CCCCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 313 ----QDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 313 ----~~~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
.....+. .+|..++.++..++++.+++..|.+++.+++||++ + |+++|+||..|++.
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 0000111 15667899999999999999999999999999999 4 89999999999974
No 107
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.39 E-value=3.7e-12 Score=125.46 Aligned_cols=113 Identities=17% Similarity=0.323 Sum_probs=98.4
Q ss_pred cccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163 238 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 314 (376)
Q Consensus 238 ~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~---g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 314 (376)
+.|.+++.++.+++++.+++++|.+++++++||+|++ ++++|+++.+|+..... .+.++.+
T Consensus 84 ~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~d------- 147 (450)
T TIGR01302 84 NGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSE------- 147 (450)
T ss_pred CceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHH-------
Confidence 3366688999999999999999999999999999987 79999999999975321 1346666
Q ss_pred CCCCcccCC-CcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163 315 ANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 315 ~~~~~~im~-~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
+|. .++.++.+++++.++++.|.+++.+.+|||| +.|+++|+||..||++.+
T Consensus 148 ------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 148 ------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR 200 (450)
T ss_pred ------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence 566 4789999999999999999999999999999 579999999999999875
No 108
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.39 E-value=3.8e-12 Score=126.69 Aligned_cols=115 Identities=21% Similarity=0.368 Sum_probs=100.4
Q ss_pred cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163 236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 315 (376)
Q Consensus 236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 315 (376)
+++.|.+++.++.+++++.+++++|.+++++++||+|++++++|+++.+|+..... . ..++.+
T Consensus 89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~---~~~V~d-------- 151 (486)
T PRK05567 89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------L---SQPVSE-------- 151 (486)
T ss_pred hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------C---CCcHHH--------
Confidence 34557789999999999999999999999999999999999999999999964211 1 245666
Q ss_pred CCCcccCC-CcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163 316 NPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 316 ~~~~~im~-~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
+|. +++.++.+++++.++++.|.+++++.+||+| ++|+++|+||..||++.+
T Consensus 152 -----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 152 -----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE 204 (486)
T ss_pred -----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence 555 6789999999999999999999999999999 579999999999999875
No 109
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.39 E-value=3.1e-12 Score=116.44 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=103.4
Q ss_pred ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163 235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 312 (376)
Q Consensus 235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~ 312 (376)
.|.++|. ....++.+++++.+-.++-.+.+.+++||+|+..+++|++|.+|+..... +.++..
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieK----- 253 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEK----- 253 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHH-----
Confidence 4667777 67889999999999999999999999999999999999999999977221 356666
Q ss_pred CCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163 313 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 313 ~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
+|++++.++.+.+|+..+.++|.-.++.-+||+| ++.+++|+||++|+++.|
T Consensus 254 --------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~l 305 (432)
T COG4109 254 --------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSL 305 (432)
T ss_pred --------HhccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHH
Confidence 8999999999999999999999999999999999 589999999999999986
No 110
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.39 E-value=8.8e-12 Score=99.37 Aligned_cols=111 Identities=18% Similarity=0.367 Sum_probs=91.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.++++.|.+.+++.+||+|+ +| +++|+++..|+++.+...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~---------- 58 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPS---------- 58 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccc----------
Confidence 4567899999999999999999999999975 56 899999999998865321100 001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC--CcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~--g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.+++++.+++++|.+++...+||+|++ |+++|++|.+|++.
T Consensus 59 --~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 59 --AVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred --cHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 1334477788999999999999999999999999999987 89999999999875
No 111
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=7.3e-12 Score=98.74 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=89.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.+|++.|.+++.+.+||+|. +| +++|+++..+++... ...+
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------------~~~~--------- 54 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------------PDTT--------- 54 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------------cccc---------
Confidence 5788999999999999999999999999975 56 899999999986421 0112
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 55 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 55 ---IEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred ---HHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 33446677889999999999999999999999999999999999999999874
No 112
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.37 E-value=4.1e-12 Score=120.42 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=98.9
Q ss_pred CCCCCCC--ceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccc
Q 017163 147 GRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV 224 (376)
Q Consensus 147 ~~~~~~~--~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i 224 (376)
+++|.++ ++++++++++.+|++.|.+++...+||+|+ +| +++|+++..|+.+++..... .
T Consensus 200 ~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~~--------~---- 261 (321)
T PRK11543 200 HHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGGA--------L---- 261 (321)
T ss_pred HHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCCC--------c----
Confidence 3467777 999999999999999999999999999975 57 89999999999875532100 0
Q ss_pred ccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163 225 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 289 (376)
Q Consensus 225 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~ 289 (376)
...+.++|.+++.++.+++++.+|++.|.++++..+||+|++|+++|++|++|++++
T Consensus 262 --------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 --------TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred --------CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 123456688899999999999999999999999999999988999999999999863
No 113
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1.2e-11 Score=98.19 Aligned_cols=111 Identities=14% Similarity=0.247 Sum_probs=90.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.+|++.|.+.+.+.+||+|+ ++ +++|+++..++.+.+..... +...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~~-------~~~~---------- 58 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESEE-------LKDA---------- 58 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhhh-------hcCC----------
Confidence 3567899999999999999999999999975 56 79999999999874332100 0111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 59 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 59 --KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred --cHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 233447778899999999999999999999999999998899999999999864
No 114
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.37 E-value=5.4e-12 Score=124.55 Aligned_cols=117 Identities=14% Similarity=0.234 Sum_probs=101.2
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHh-----CCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 017163 234 PRIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 308 (376)
Q Consensus 234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~ 308 (376)
.+++++|++++.+++++.++.+|++.|.+ ++...++|+|++++++|+++.+|++.. . .+.++++
T Consensus 131 ~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a-----~-----~~~~v~~- 199 (449)
T TIGR00400 131 DSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA-----K-----PEEILSS- 199 (449)
T ss_pred chHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC-----C-----CCCcHHH-
Confidence 35677799999999999999999999975 466789999999999999999998641 1 1245666
Q ss_pred HhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163 309 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374 (376)
Q Consensus 309 l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~ 374 (376)
+|.+++.++.+++++.+|++.|.+++...+|||| ++|+++|+||..|+++.+.
T Consensus 200 ------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 200 ------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred ------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence 6777788999999999999999999999999999 5799999999999998874
No 115
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.1e-11 Score=100.17 Aligned_cols=123 Identities=20% Similarity=0.326 Sum_probs=94.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.++.++.+|+++|.+++...+||++. ++| +++|+++..++++++......... ...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~----~~~~~~----~~~ 68 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKI----KTGNGL----EAI 68 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccc----cccccc----hhh
Confidence 5678899999999999999999999999975 237 899999999999876532111000 000000 001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
...+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 12344557778999999999999999999999999999998899999999999875
No 116
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1.3e-11 Score=98.80 Aligned_cols=113 Identities=17% Similarity=0.252 Sum_probs=89.5
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 243 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~-i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
++.++.+++++.++++.|.+.+ .+.+||+|+ |+++|+++..|+............ ..+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~v~~-------------~ 66 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRAL-YGKKPVSE-------------V 66 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHH-HcCCcHHH-------------h
Confidence 4567899999999999998877 899999998 999999999999875432110000 01234555 6
Q ss_pred CCCcceEecCCCCHHHHHHHHhcCCCcE---EEEEeCCCCeEEEEEeHHHHHH
Q 017163 322 NGQRCQMCLRSDPLHKVMERLANPGVRR---LVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~---l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
|..++.++.+++++.++++.|.+++.++ .+||+ ++|+++|+||..|+++
T Consensus 67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence 6678999999999999999999998643 46888 4699999999999985
No 117
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.36 E-value=1.2e-11 Score=97.38 Aligned_cols=100 Identities=22% Similarity=0.343 Sum_probs=86.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 319 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 319 (376)
....+.+++++.++.+.|.+.+...+||+|+ +|+++|+++.+|+.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 4567899999999999999999999999998 6999999999999774421
Q ss_pred ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 320 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 320 ~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|..++.++..++++.++++.|.+++.+.+||+++ |+++|+||..|++++
T Consensus 56 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 -YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLKA 105 (105)
T ss_pred -hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhcC
Confidence 12345779999999999999999999999999973 899999999999864
No 118
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=9.2e-12 Score=98.89 Aligned_cols=112 Identities=23% Similarity=0.300 Sum_probs=91.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.+|++.|.+++.+.+||+++ ++ +++|+++..++++.+....... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~----------- 59 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGV----------- 59 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCC-----------
Confidence 5678899999999999999989999999975 56 8999999999988664321000 001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
..+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus 60 -~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 60 -ATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred -ccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 1344557778889999999999999999999999999987 99999999999875
No 119
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.36 E-value=1.6e-11 Score=96.67 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=89.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.++.++.++++.|.+++...+||+++ ++ +++|+++..|+++.... ..+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~------------~~~--------- 55 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKE------------AKS--------- 55 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhc------------CCc---------
Confidence 5678899999999999999999999999975 46 89999999999874311 011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+.++|...+.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus 56 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 56 ---LEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred ---HhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 23346677889999999999999999999999999998999999999999864
No 120
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.35 E-value=6e-12 Score=119.50 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=97.1
Q ss_pred CCCCCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccc
Q 017163 146 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 223 (376)
Q Consensus 146 ~~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~ 223 (376)
++++|.+ +++++.+++++.+|++.|.+++...+||+|+ +| +++|++|..|+.+.+.... .+.
T Consensus 204 V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~-------~~~--- 267 (326)
T PRK10892 204 VSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI-------DLR--- 267 (326)
T ss_pred HHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC-------Ccc---
Confidence 3457776 8999999999999999999998888888865 57 8999999999977432110 000
Q ss_pred cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163 224 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 289 (376)
Q Consensus 224 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~ 289 (376)
...+.++|.+++.++.+++++.+|++.|.+++++.+||+| +|+++|++|++|+++.
T Consensus 268 ---------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 268 ---------QASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ---------cCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 1245666988999999999999999999999999999997 6899999999999873
No 121
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=1.6e-11 Score=97.73 Aligned_cols=110 Identities=19% Similarity=0.327 Sum_probs=86.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
++.++.+++++.+|++.|.+++ ...++|.+ .| +++|+++..|+++++..... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~-------~~~~--------- 58 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE----KG---RLLGIFTERDIVRLTAIGKD-------LSDL--------- 58 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC----CC---cEEEEEeHHHHHHHHhcCCC-------cccc---------
Confidence 4567899999999999998888 56667764 25 79999999999886532110 0011
Q ss_pred cccccccccCCCceEecCC--CCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 232 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 232 ~~~~v~~~m~~~~~~v~~~--~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.++ +++.+|++.|.+++...+||+|++|+++|++|++|+++
T Consensus 59 ---~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 59 ---PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ---CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 2334477778888887 68999999999999999999998999999999999875
No 122
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=2e-11 Score=95.78 Aligned_cols=104 Identities=19% Similarity=0.365 Sum_probs=88.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 322 (376)
++.++..+.++.++++.|.+.+.+.+||+|++|+++|+++..++..... +.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~-------------~~ 58 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLAL-------------LM 58 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHH-------------Hh
Confidence 4678889999999999999999999999998899999999999975210 123343 44
Q ss_pred CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..++.++..++++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred cCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 567889999999999999999999999999994 79999999999975
No 123
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.35 E-value=1.6e-11 Score=97.03 Aligned_cols=109 Identities=16% Similarity=0.240 Sum_probs=89.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++++.++.++.+|++.|.+++...+||+++ .+| +++|+++..+++++...... ..++.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~------- 60 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDLR------- 60 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCHH-------
Confidence 4678999999999999999999999999975 126 89999999999986532110 01111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+++ .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus 61 -----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 61 -----DLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred -----HHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 223 36788999999999999999999999999998899999999999864
No 124
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.3e-11 Score=101.19 Aligned_cols=125 Identities=18% Similarity=0.367 Sum_probs=94.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC--Ccc-cc--ccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS--SLP-IL--QQPVSSI 227 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~--~~~-~~--~~~i~~l 227 (376)
++.++.+++++.+|++.|.+++++++||+|+ ++ +++|+++..++++++......... ... .. ......+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL 75 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence 5678999999999999999999999999975 56 899999999999877543211000 000 00 0000000
Q ss_pred cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
....+.++|.+++..+.+++++.+++++|.+++.+.+||+|+ |+++|++|.+|++.
T Consensus 76 ----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 76 ----LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred ----cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 011355667788899999999999999999999999999987 99999999999874
No 125
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.35 E-value=1.7e-11 Score=97.27 Aligned_cols=111 Identities=19% Similarity=0.349 Sum_probs=92.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.++++.|.+.+.+.+||+++ ++ +++|+++..++.+++...... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~----------- 58 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LT----------- 58 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------cc-----------
Confidence 4567899999999999998888999999975 56 899999999999876532211 00
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
..+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 59 -~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 -LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred -CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 1244457778889999999999999999999999999998899999999999864
No 126
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.4e-11 Score=97.50 Aligned_cols=109 Identities=15% Similarity=0.277 Sum_probs=90.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.+|++.|.+++.+.+||+++ +| +++|+++..|++.+..... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~---------- 57 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEK---------- 57 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccC----------
Confidence 5678899999999999999999999999975 56 8999999999987542110 0011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|.+++.++.+++++.+|++.|.+++...+||+|+ |+++|+||..|++.
T Consensus 58 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 58 --KVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred --cHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 233447778899999999999999999999999999987 99999999999863
No 127
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.35 E-value=2.6e-11 Score=95.68 Aligned_cols=108 Identities=22% Similarity=0.423 Sum_probs=90.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++++.+++++.+|++.|.+++++.+||+++ + +++|+++..+++++...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~~l~~~~~~~~~---------~~---------- 55 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD----G---KLVGIVTLSDIAHAIARGLE---------LA---------- 55 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhcccc---------cc----------
Confidence 5778999999999999999999999999953 5 79999999999885432110 01
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 56 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 56 --KVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred --CHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 233446678899999999999999999999999999998899999999999864
No 128
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=9.7e-12 Score=102.27 Aligned_cols=128 Identities=19% Similarity=0.344 Sum_probs=94.7
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccc--ccccc--
Q 017163 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ--PVSSI-- 227 (376)
Q Consensus 152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~--~i~~l-- 227 (376)
+++.++.+++++.+|++.|.+++.+++||+|+ ++ +++|+++..++++++...+..... .+... .....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 73 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRRA--RWLDLLAGAEELAA 73 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchhh--hHHHHhcchHHHHH
Confidence 46788999999999999999999999999975 56 899999999998765432110000 00000 00000
Q ss_pred cc-cccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 228 QL-GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 228 ~i-~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.. ......+.++|..++.++.+++++.++++.|.+++.+.+||+| +|+++|++|++|+++
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 00 0011235566778899999999999999999999999999999 899999999999864
No 129
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=1.6e-11 Score=101.17 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=94.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCC-CCC-ccccc--ccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSS-LPILQ--QPVSSIQ 228 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~-~~~-~~~~~--~~i~~l~ 228 (376)
+++++.+++++.+|++.|.+++.+.+||+|+ ++ +++|+++..++++++....... ... ..+.. .+.....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 4677899999999999999999999999975 56 8999999999998664211100 000 00000 0000000
Q ss_pred ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.......+.++|..++..+.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 011122466778888999999999999999999999999999986 99999999999875
No 130
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.34 E-value=1.9e-11 Score=96.63 Aligned_cols=109 Identities=20% Similarity=0.371 Sum_probs=90.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.++.++.+|++.|.+++.+++||+++ + +++|+++..++.+.+.... . ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~-~------~~~~---------- 57 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEG-L------DPDT---------- 57 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccC-C------CccC----------
Confidence 5678999999999999999999999999963 5 8999999999987543210 0 0011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.+++++.++++.|.+++.+++||+++ |+++|++|.+|+++
T Consensus 58 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 58 --PVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred --CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 234447778999999999999999999999999999986 99999999999975
No 131
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.34 E-value=2.6e-11 Score=97.31 Aligned_cols=120 Identities=19% Similarity=0.288 Sum_probs=93.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.++.++.+|++.|.+.+...+||+++ | +++|+++..+++.+......... ..+...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence 5678899999999999999999999999963 5 89999999999986543211110 000000011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 12355667788999999999999999999999999999998899999999999875
No 132
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.33 E-value=1.4e-11 Score=122.13 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=96.9
Q ss_pred ccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163 239 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 315 (376)
Q Consensus 239 ~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~---g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 315 (376)
.|..+++++.+++++.+|+++|.+++++.+||+|++ ++++|+++.+|+..... .+.++.+
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~---------~~~~V~d-------- 163 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD---------KSTPVSE-------- 163 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc---------CCCCHHH--------
Confidence 355678899999999999999999999999999874 89999999999974210 1356777
Q ss_pred CCCcccCCC--cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163 316 NPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 316 ~~~~~im~~--~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
+|.. ++.++.+++++.+|++.|.+++++.+|||| ++++++|+||.+||++..
T Consensus 164 -----iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 164 -----VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR 217 (495)
T ss_pred -----hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence 6665 789999999999999999999999999999 479999999999999764
No 133
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.33 E-value=2e-11 Score=121.27 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=97.9
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 314 (376)
Q Consensus 235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 314 (376)
+++++|.+++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+......+.... +.++.+
T Consensus 336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~----~~~v~~------- 404 (454)
T TIGR01137 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANP----DDAVSK------- 404 (454)
T ss_pred CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCc----CCCHHH-------
Confidence 577889999999999999999999999999999999998899999999999988554321111 245666
Q ss_pred CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163 315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
+|..++.++.+++++.++++.|.+++ .++|++ +|+++|+||.+|++++|
T Consensus 405 ------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 405 ------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred ------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 66677889999999999999998764 355553 58999999999999986
No 134
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.33 E-value=3.1e-11 Score=96.26 Aligned_cols=111 Identities=26% Similarity=0.486 Sum_probs=94.9
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccc
Q 017163 150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 229 (376)
Q Consensus 150 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i 229 (376)
+.+.++++.++.++.+|+..|.++++..+||++. + +++|++|.+|+++.+....... .
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~--------~------- 62 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRL--------L------- 62 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCcc--------c-------
Confidence 4578899999999999999999999999999964 2 6999999999999775433221 0
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHh-CCCCEEEEECCCC-cEEEEEeHHHHH
Q 017163 230 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT 287 (376)
Q Consensus 230 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~i~~lpVvd~~g-~lvGiis~~Di~ 287 (376)
.+.++|..++.++.+++++.++.+.|.+ ++++++||+|+++ +++|++|++|++
T Consensus 63 -----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 -----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 2445577789999999999999999999 7999999999886 999999999973
No 135
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.33 E-value=3.8e-11 Score=94.79 Aligned_cols=109 Identities=24% Similarity=0.421 Sum_probs=90.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.+|++.|.+++.+.+||+++ + +++|+++..++.++...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~----------- 55 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQ----------- 55 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CC-----------
Confidence 4678899999999999999989999999963 5 89999999999886532110 01
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
..+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus 56 -~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 56 -TPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred -cCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 1234457778899999999999999999999999999998899999999999864
No 136
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.33 E-value=3.2e-11 Score=95.61 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=90.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.++++.|.+++.+.+||+++ + +++|+++..++++.+...... . ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-----~-~~~~--------- 59 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----N---KLVGIFTSKDIALRVVAQGLD-----P-ESTL--------- 59 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHHhcCCC-----c-CcCC---------
Confidence 5678899999999999999999999999953 5 899999999998644321100 0 0112
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+.++|..++.++.+++++.++++.|.+++..++||++++|+++|++|.+|++.
T Consensus 60 ---v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 60 ---VERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred ---HHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 33447778889999999999999999999999999998899999999999864
No 137
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.32 E-value=2.7e-11 Score=96.06 Aligned_cols=111 Identities=25% Similarity=0.366 Sum_probs=92.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.++++.|.++++..+||++. ++ +++|+++..++.+++..... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~--------~~----------- 56 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL--------YD----------- 56 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc--------cc-----------
Confidence 5678999999999999999999999999975 46 79999999999886532100 00
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiis~~Di~~ 288 (376)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ .|+++|+++..|++.
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 01344557788999999999999999999999999999987 799999999999864
No 138
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.4e-11 Score=97.80 Aligned_cols=120 Identities=22% Similarity=0.396 Sum_probs=93.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.+|++.|.+++.+.+||+|. +| +++|+++..++++.......... ..... ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~ 65 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence 5678999999999999999999999999975 56 89999999999874311100000 00000 001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
...+.++|..++.++..++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 22345567778899999999999999999999999999998899999999999874
No 139
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=4e-11 Score=94.65 Aligned_cols=108 Identities=19% Similarity=0.421 Sum_probs=90.0
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
+++.++.++.++.+|++.|.+++..++||+++ + +++|+++..++.+.+.... ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~dl~~~~~~~~---------~~~~-------- 57 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG----G---RVVGIISRRDVEKALRHGL---------GHAP-------- 57 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC----C---EEEEEEEHHHHHHHHhccc---------ccCc--------
Confidence 36788999999999999999889999999963 5 7999999999987542111 1122
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+.++|.+++.++.+++++.+++++|.+++.+.+||+| +|+++|++|..|++.
T Consensus 58 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 58 ----VKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ----HHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 3344777889999999999999999999999999998 899999999999864
No 140
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.31 E-value=3.7e-11 Score=95.72 Aligned_cols=109 Identities=18% Similarity=0.279 Sum_probs=86.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.+|++.|.+++...+||+|....+| +++|+++..+++... . ...+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-----~-------~~~~--------- 58 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-----D-------SETP--------- 58 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-----c-------cCCC---------
Confidence 467889999999999999989999999996421246 899999999986411 0 0111
Q ss_pred ccccccccCCCceEecC--CCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~--~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+.++|.....++.. ++++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus 59 ---v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 59 ---LSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred ---HHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 33446666667756 999999999999999999999998999999999999864
No 141
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.8e-11 Score=97.22 Aligned_cols=119 Identities=19% Similarity=0.426 Sum_probs=92.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++++.+++++.++++.|.+++.+.+||++. | +++|+++..++.+++........ ......+...
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~------ 66 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG----G---KLVGIVTEKDIADALRSFRPLVR--DRHQERRIRN------ 66 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC----C---EEEEEEchHHHHHhhhhhhhccc--chhhhhhhhc------
Confidence 5778999999999999999999999999963 5 89999999999886643221100 0000111111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
..+.++|..++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 67 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 67 -LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred -cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 1344557778999999999999999999999999999987 99999999999874
No 142
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=4.1e-11 Score=97.47 Aligned_cols=124 Identities=15% Similarity=0.281 Sum_probs=92.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.+|+++|.+.+.+.+||+++ ++ +++|++|..++..++........ ......... ...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~~-~~~ 69 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEKE-RML 69 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhhh-hhc
Confidence 4678899999999999999999999999975 46 89999999999876532110000 000000000 001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEEC--CCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd--~~g~lvGiis~~Di~~ 288 (376)
...+.++|..+++++.+++++.++++.|.+.+...+||++ ++|+++|+||.+|++.
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 1234566888899999999999999999999999999994 4699999999999864
No 143
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.30 E-value=1.3e-11 Score=119.15 Aligned_cols=120 Identities=18% Similarity=0.305 Sum_probs=104.8
Q ss_pred CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163 146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 225 (376)
Q Consensus 146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~ 225 (376)
+++.+..+.++|++..++.+|..+|.++|++.+.+++. ++ ...||+|.+|+.+.+...... ..
T Consensus 151 v~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~---- 213 (610)
T COG2905 151 VGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KT---- 213 (610)
T ss_pred HHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------cc----
Confidence 35678899999999999999999999999999999975 55 799999999999987653322 12
Q ss_pred cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
.+|+++|+.+++++..++.+.+|+-+|..+++.++||+ ++|+++|++|..||+.+..
T Consensus 214 --------~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 214 --------QKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILTLTDILRLFS 270 (610)
T ss_pred --------cchhhhhccCceeecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEeeHHHHHHhhC
Confidence 24666699999999999999999999999999999999 5899999999999999776
No 144
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=6.2e-11 Score=93.82 Aligned_cols=110 Identities=17% Similarity=0.364 Sum_probs=88.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
.+..+.+++++.+|++.|.+++.+.++|.+ +| +++|+++..++++++...... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~---------- 58 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLDT---------- 58 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhcC----------
Confidence 467889999999999999888877777663 36 899999999999866421100 0011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.+++++.+|++.|.+++...+||+| +|+++|++|.+|+++
T Consensus 59 --~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 59 --TVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred --CHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 24445777788999999999999999999999999998 699999999999875
No 145
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.30 E-value=2.9e-11 Score=117.31 Aligned_cols=121 Identities=17% Similarity=0.266 Sum_probs=105.7
Q ss_pred cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC
Q 017163 141 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS 215 (376)
Q Consensus 141 ~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~ 215 (376)
|..+.+|+.|...++++.++.|+.+|+..+++. .+..+.|+|. ++ ++.|+++.++++.
T Consensus 129 y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~----------- 191 (451)
T COG2239 129 YPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLT----------- 191 (451)
T ss_pred CChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhc-----------
Confidence 999999999999999999999999999999854 4678899976 56 8999999999875
Q ss_pred CccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163 216 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 292 (376)
Q Consensus 216 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~ 292 (376)
..-.. .++++|.+.++++.+++..+++.+++.+++.-++||||++++++|++|..|++..+.+
T Consensus 192 --a~~~~------------~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 192 --AEPDE------------LLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred --CCcHh------------HHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 00122 3445588889999999999999999999999999999999999999999999997764
No 146
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3.2e-11 Score=97.96 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=86.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhh--hccCCCCCcccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR--HFKHSSSSLPILQQPVSSIQLG 230 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~--~~~~~~~~~~~~~~~i~~l~i~ 230 (376)
+++++.+++++.+|++.|.+++.+.+||+++ +| +++|+++..|+.+.... ..... ......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~-------- 64 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSEL-------- 64 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC---CCchhe--------
Confidence 4678899999999999999999999999975 56 89999999999862210 00000 000111
Q ss_pred ccccccccccCCCceEe------cCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHH
Q 017163 231 TWVPRIGEANGRPFAML------RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA 288 (376)
Q Consensus 231 ~~~~~v~~~m~~~~~~v------~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~ 288 (376)
.+.++|.++...+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 65 ----~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 65 ----TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ----EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 2344566554333 368899999999999999999999986 89999999999864
No 147
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=4.5e-11 Score=96.24 Aligned_cols=120 Identities=23% Similarity=0.324 Sum_probs=94.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++++.+++++.+|++.|.+++++.+||+++ | +++|+++..++.+.+........ ....+ .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~--~~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED----N---ELVGVISDRDYLKAISPFLGTAG-------ETEKD--LATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC----C---eEEEEEEHHHHHHHHHHHhcccc-------chHHH--HHHH
Confidence 4678999999999999999999999999963 5 89999999999886654322110 00000 0111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
...+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|++.
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 22355667788999999999999999999999999999998899999999999875
No 148
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.29 E-value=4.5e-11 Score=94.16 Aligned_cols=106 Identities=20% Similarity=0.338 Sum_probs=86.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.++++.|.+++...+||+++ +| +++|+++..+++... . ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~~--------- 55 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDKP--------- 55 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCCC---------
Confidence 5678899999999999999999999999975 46 899999999986410 0 0112
Q ss_pred ccccccccCCCceEecC-CCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~-~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+.++|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus 56 ---v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 56 ---VSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred ---HHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 33446555666666 999999999999999999999998899999999999864
No 149
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=9.1e-11 Score=92.87 Aligned_cols=110 Identities=21% Similarity=0.387 Sum_probs=89.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++.+.+++++.++++.|.+.+.+.+||+++ + +++|+++..++++++...... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~---------- 58 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREV---------- 58 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccC----------
Confidence 5678899999999999999999999999964 3 799999999999865422100 0011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|.+++.++.+++++.++++.|.+++...+||+|++ +++|+++++|++.
T Consensus 59 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 59 --PVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred --CHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 2344477788899999999999999999999999999865 9999999999864
No 150
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.28 E-value=4.9e-11 Score=118.40 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=96.5
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccc
Q 017163 150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 229 (376)
Q Consensus 150 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i 229 (376)
|..+++++.+++++.+|+++|.+++++.+||+|+...++ +++|++|..|+.... ....+
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~------------~~~~~------ 164 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN------------DRETK------ 164 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc------------ccCCc------
Confidence 668899999999999999999999999999997421136 899999999985411 01223
Q ss_pred cccccccccccCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 230 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 230 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
+.++|+++ ++++.+++++.+|+++|.++++..+||+|++++++|+||++|+++...
T Consensus 165 ------V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 165 ------LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred ------HHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 44557765 889999999999999999999999999999999999999999998664
No 151
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=7.9e-11 Score=93.30 Aligned_cols=110 Identities=20% Similarity=0.361 Sum_probs=89.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH-HHhhhccCCCCCccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~-~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
++.++.+++++.+|++.|.+++.+.+||+++ | +++|+++..+++. .+..... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~i~~~~l~~~~~~~~~~-------~~~---------- 57 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN----D---RLVGIVTDRDIVVRAVAEGRD-------PDT---------- 57 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEhHHHHHHHhhccCC-------ccc----------
Confidence 5678999999999999999999999999953 5 8999999999873 2211100 000
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
..+.++|...+.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+++
T Consensus 58 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 --TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred --CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1244457778889999999999999999999999999998899999999999865
No 152
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.28 E-value=1.1e-10 Score=115.17 Aligned_cols=164 Identities=16% Similarity=0.235 Sum_probs=117.7
Q ss_pred CeeecccCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeC
Q 017163 82 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG 158 (376)
Q Consensus 82 ~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 158 (376)
...|++.+. ..-+|..++..++......+ .+++.++-. ..++..+.. +..+.++++++.
T Consensus 33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~----~~V~~Vk~~----------~~~~~~~~vtl~ 94 (450)
T TIGR01302 33 LNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQA----EQVKRVKRA----------ENGIISDPVTIS 94 (450)
T ss_pred cCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHH----HHHhhhccc----------cCceecCceEeC
Confidence 447877543 24568888887776654422 222211110 111111111 124667899999
Q ss_pred CCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccccccc
Q 017163 159 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 238 (376)
Q Consensus 159 ~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~ 238 (376)
+++++.+|+++|.+++++++||+|++...+ +++|+++.+|++... . ... .+.+
T Consensus 95 ~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~------------~V~d 147 (450)
T TIGR01302 95 PETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGK------------PVSE 147 (450)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCC------------CHHH
Confidence 999999999999999999999997621115 899999999996411 0 112 2344
Q ss_pred ccC-CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163 239 ANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 290 (376)
Q Consensus 239 ~m~-~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~ 290 (376)
+|. .+++++.+++++.++++.|.+++...+||+|++|+++|++|..|+++..
T Consensus 148 vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 148 VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 577 4899999999999999999999999999999999999999999999864
No 153
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.28 E-value=1e-10 Score=92.27 Aligned_cols=109 Identities=23% Similarity=0.380 Sum_probs=90.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++.+.+++++.++++.|.+.+.+++||+++ + +++|+++..|+.+....... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~-------------~~------ 55 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD----G---RLVGIVTLADIRRVPAEGRE-------------AT------ 55 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC----C---eEEEEEEHHHHHHHHhcCcc-------------cc------
Confidence 5778999999999999999989999999963 5 79999999999875432110 00
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
..+.+.|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 56 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 -VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 1233447778999999999999999999999999999998899999999999865
No 154
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.27 E-value=1.1e-10 Score=91.48 Aligned_cols=111 Identities=23% Similarity=0.457 Sum_probs=91.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.++++.|.+++.+.+||++. ++ +++|+++..++++++........ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~---------- 58 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------V---------- 58 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------c----------
Confidence 4677899999999999999999999999975 46 89999999999987754322110 0
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 59 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 59 --TVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred --cHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 023346667889999999999999999999999999999999999999999864
No 155
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=8.9e-11 Score=91.70 Aligned_cols=102 Identities=19% Similarity=0.394 Sum_probs=86.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++..+.+++++.++++.|.+++.+.+||+++ + +++|+++..++++.. ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~-------------~~~~--------- 52 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAH-------------PNRL--------- 52 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhccc-------------ccCC---------
Confidence 4677899999999999999999999999953 5 799999999997621 0111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 287 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~ 287 (376)
+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus 53 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 53 ---VADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred ---HHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 23446778899999999999999999999999999987 9999999999986
No 156
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.26 E-value=7.2e-11 Score=97.08 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=80.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccccc-------ccccHHHHHhcCCCC
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL-------DEMNIHQALQLGQDA 315 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~-------~~~~v~~~l~~~~~~ 315 (376)
.+.++.+++++.+|++.|.+++.+++||+|++|+++|++|..|+++............ ....+.++.....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI-- 79 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh--
Confidence 4678999999999999999999999999999999999999999998664322211000 0001122110000
Q ss_pred CCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeC
Q 017163 316 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 355 (376)
Q Consensus 316 ~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~ 355 (376)
-++.|..++.++.+++++.+|++.|.+++++++||+|+
T Consensus 80 --~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 80 --SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred --hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 00124567889999999999999999999999999985
No 157
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.26 E-value=6e-11 Score=117.59 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=91.7
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccc
Q 017163 154 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 233 (376)
Q Consensus 154 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~ 233 (376)
..++.+++++.+|+++|.+++.+.+||+|+..+++ +++|++|..|+... . .....
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~----------- 161 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDT----------- 161 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCC-----------
Confidence 36899999999999999999999999997422246 89999999998531 0 01122
Q ss_pred cccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163 234 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 289 (376)
Q Consensus 234 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~ 289 (376)
.+.++|++ +++++.+++++.+|+++|.+++++.+||+|++|+++|+||++|+++.
T Consensus 162 -~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 162 -KVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred -CHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 34455875 78999999999999999999999999999999999999999999884
No 158
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=6.6e-11 Score=93.39 Aligned_cols=102 Identities=16% Similarity=0.252 Sum_probs=84.2
Q ss_pred eCCCCCHHHHHHHHHhCC-----CceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163 157 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 157 v~~~~sl~~a~~~m~~~~-----v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
+.+++++.++++.|.+++ +..+||+++ ++ +++|+++.+++++. . ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------------~-~~~--------- 53 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------------D-PDT--------- 53 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------------C-Ccc---------
Confidence 568899999999998777 478999965 46 79999999988651 0 011
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163 232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 289 (376)
Q Consensus 232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~ 289 (376)
.+++++..++..+.+++++.++++.|.+++...+||+|++|+++|++|..|+++.
T Consensus 54 ---~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 54 ---PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred ---hHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 2334467778999999999999999999999999999989999999999999863
No 159
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.26 E-value=2.1e-10 Score=106.72 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=120.7
Q ss_pred hhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 017163 45 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 124 (376)
Q Consensus 45 l~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~ 124 (376)
|..+++.|+|-.-.++++++.+.++.++++.+.+++....||++.+.++++|+++..|++..+.. .....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~------- 133 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF------- 133 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence 45568999997767899999999999999999999999999999776779999999999864421 00000
Q ss_pred hhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH
Q 017163 125 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 204 (376)
Q Consensus 125 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~ 204 (376)
.+.. +|. +++++.+++++.++++.|.+++.+.+||+|+ .| .++|+||..|++.
T Consensus 134 -~l~~-------------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~G---~viGiVTleDIle 186 (292)
T PRK15094 134 -SMDK-------------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSGLVTIEDILE 186 (292)
T ss_pred -CHHH-------------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---CC---CEEEEeEHHHHHH
Confidence 1111 233 4558999999999999999999999999975 56 7999999999999
Q ss_pred HHhhhccCCCCCccccccccccccccccccccccccCCCceEecCCCCHHHHHHHH
Q 017163 205 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 260 (376)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m 260 (376)
.+......... ..-...+..+. ..-..+....++.+..+.+
T Consensus 187 ~ivGei~de~d--~~~~~~i~~~~-------------~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 187 LIVGEIEDEYD--EEDDIDFRQLS-------------RHTWTVRALASIEDFNEAF 227 (292)
T ss_pred HHhCCCccccc--cccccccEEeC-------------CCeEEEEeccCHHHHHHHh
Confidence 88754332210 00001122222 2234678888888887776
No 160
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=1.5e-10 Score=90.73 Aligned_cols=105 Identities=20% Similarity=0.431 Sum_probs=88.1
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
++++++.++.++.++++.|.+.+...+||+++ + +++|+++..+++.. . ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~---~~~g~v~~~~l~~~------~-------~~~--------- 52 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN----G---KVVGIVSARDLLGK------D-------PDE--------- 52 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhcc------C-------ccc---------
Confidence 35778999999999999998888889999953 5 89999999998751 0 011
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|...+.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 53 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 53 ---TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ---cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 233446677889999999999999999999999999999999999999999864
No 161
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.25 E-value=2.2e-10 Score=111.59 Aligned_cols=162 Identities=16% Similarity=0.186 Sum_probs=122.2
Q ss_pred hhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 017163 45 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 124 (376)
Q Consensus 45 l~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~ 124 (376)
|++.++.|+|-.-.++++++.+.++.++++.+.+++.+..||++++.++++|+++..|++..+. . ...
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~~------- 255 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KNF------- 255 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CCC-------
Confidence 3567899999887899999999999999999999999999999987778999999999985331 1 000
Q ss_pred hhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH
Q 017163 125 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 204 (376)
Q Consensus 125 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~ 204 (376)
.+.. + .+++..+++++++.++++.|.+++.|.++|+|+ .| .+.|++|.+|++.
T Consensus 256 -~l~~-------------------~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~G---~~~GiVT~eDile 308 (408)
T TIGR03520 256 -DWQS-------------------L-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---YG---GTSGLVTLEDIIE 308 (408)
T ss_pred -CHHH-------------------H-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---CC---CEEEEEEHHHHHH
Confidence 1111 2 235789999999999999999999999999975 56 7999999999999
Q ss_pred HHhhhccCCCCCccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHH
Q 017163 205 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV 261 (376)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~ 261 (376)
.+........ ......+..+. .....+....++.+..+.|.
T Consensus 309 eivgei~de~---d~~~~~i~~~~-------------~~~~~v~G~~~l~~l~~~l~ 349 (408)
T TIGR03520 309 EIVGDISDEF---DDEDLIYSKID-------------DNNYVFEGKTSLKDFYKILK 349 (408)
T ss_pred HHhCCCCCcC---CcCccceEEeC-------------CCeEEEEeccCHHHHHHHhC
Confidence 8864322211 00111122221 23456777888998888873
No 162
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.25 E-value=1.2e-10 Score=91.66 Aligned_cols=108 Identities=19% Similarity=0.383 Sum_probs=86.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++.+++++.+|++.|.+++++.+||+++ + +++|+++..++.+++...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~~---------- 57 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDALIEGKAK-------FSL---------- 57 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHHHhccccc-------cCc----------
Confidence 5678899999999999999999999999953 5 799999999999866432110 011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.++|.+++.++++++++.+++++|.+ . ..+||++++|+++|++|.+|+..
T Consensus 58 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 58 --PVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred --CHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 2334467788899999999999999987 3 34789988899999999999875
No 163
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.25 E-value=1.6e-10 Score=114.70 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=96.0
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163 149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 228 (376)
Q Consensus 149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ 228 (376)
.+..+++++.+++++.+|+++|.+++++.+||++++..++ +++|+++.+|+.. .. ....
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~-----------~~~~------ 159 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK-----------DKST------ 159 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc-----------cCCC------
Confidence 4567789999999999999999999999999997522236 8999999999863 10 0112
Q ss_pred ccccccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163 229 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 290 (376)
Q Consensus 229 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~ 290 (376)
.+.++|.+ +++++.+++++.+|+++|.++++..+||+|++++++|+||++|+++..
T Consensus 160 ------~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 160 ------PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred ------CHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 34455876 889999999999999999999999999999999999999999998753
No 164
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.24 E-value=2.2e-10 Score=90.50 Aligned_cols=109 Identities=14% Similarity=0.235 Sum_probs=88.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++.+.++.++.+|++.|.+++...++|+++ + +++|+++..++++.+..... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~-------~~~----------- 56 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG----D---PRLGIVTRTDLLDAVLLDGL-------PSS----------- 56 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC----C---eEEEEEEHHHHHHHHHcCCC-------CCC-----------
Confidence 4678899999999999999999999999953 4 79999999999875531100 001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
..+.++|..++..+.+++++.++++.|.+++...+||+|+ |+++|++|..|++.
T Consensus 57 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 57 -TPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -CCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 1234447778899999999999999999999999999974 89999999999864
No 165
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.23 E-value=1.6e-10 Score=92.72 Aligned_cols=119 Identities=16% Similarity=0.292 Sum_probs=92.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
++.++++++++.+|++.|.+.+.+.+||+|+ ++ +++|+++..++.+.......... ..+. ...+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~ 65 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL 65 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence 5678899999999999999999999999976 46 89999999999875432211100 0000 0011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
...+.++|..++.++..++++.++++.|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 12344557778899999999999999999999999999986 99999999999864
No 166
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.21 E-value=9.3e-11 Score=119.58 Aligned_cols=120 Identities=16% Similarity=0.254 Sum_probs=99.2
Q ss_pred CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163 147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 226 (376)
Q Consensus 147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~ 226 (376)
+++|.++..++++++++.++++.|.+++.+.+||+|+ ++ +++|+++.+|+.+.+...... ..
T Consensus 450 ~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~~-------~~----- 511 (574)
T PRK01862 450 RELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRDT-------TD----- 511 (574)
T ss_pred HHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhccccc-------cc-----
Confidence 3467888899999999999999999999999999975 56 899999999998754321100 00
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC--CcEEEEEeHHHHHHHHh
Q 017163 227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAK 291 (376)
Q Consensus 227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~--g~lvGiis~~Di~~~~~ 291 (376)
..+.++|.+++.++++++++.+|++.|.+++.+.+||+|++ ++++|++|++|+.+...
T Consensus 512 -------~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 512 -------KTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred -------chHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 13445588889999999999999999999999999999876 58999999999998653
No 167
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.20 E-value=3e-10 Score=88.89 Aligned_cols=100 Identities=18% Similarity=0.293 Sum_probs=84.4
Q ss_pred eEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccc
Q 017163 155 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 234 (376)
Q Consensus 155 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~ 234 (376)
+++.+++++.+|++.|.+.+...+||++. + +++|+++..++.+... .+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~--------------~~----------- 51 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY----N---KFLGAVYLKDIENATY--------------GD----------- 51 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHHhhhcc--------------cc-----------
Confidence 46789999999999999999999999963 5 8999999999876210 11
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+.++|...+.++.+++++.++++.|.+++...+||+| +|+++|++|.+|+..
T Consensus 52 -~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 52 -VVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred -hhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 2233666788999999999999999999999999997 699999999999864
No 168
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.18 E-value=1.5e-10 Score=106.84 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=91.8
Q ss_pred CCCCCCC-ceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163 147 GRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 225 (376)
Q Consensus 147 ~~~~~~~-~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~ 225 (376)
+++|.++ +..+.+++++.+|++.|.+.+++.+||+|+ +| +++|+++..|+.+++.... ....
T Consensus 158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~--- 220 (268)
T TIGR00393 158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKS--- 220 (268)
T ss_pred HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccC---
Confidence 3467777 899999999999999999999999999975 56 8999999999988542110 0112
Q ss_pred cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEe
Q 017163 226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 282 (376)
Q Consensus 226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis 282 (376)
.+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus 221 ---------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 221 ---------EVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ---------cHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 244558888999999999999999999999999999998899999984
No 169
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.15 E-value=5.8e-10 Score=87.62 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=86.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
....+.+++++.++.+.|.+++...+||+++...+| +++|+++.+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------------ 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------------ 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------------
Confidence 356789999999999999999889999996411036 89999999999874421
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+|.+++.++.+++++.++++.|.+++.+.+||+ ++|+++|++|++|+++
T Consensus 56 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv-~~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 ------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVV-DEGRLVGIITRKDLLK 104 (105)
T ss_pred ------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEE-ECCeEEEEEEhhhhhc
Confidence 255678899999999999999999999999999 5899999999999875
No 170
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=5.4e-10 Score=92.95 Aligned_cols=126 Identities=25% Similarity=0.476 Sum_probs=95.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCC----CCCcccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS----SSSLPILQQPVSSIQ 228 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~----~~~~~~~~~~i~~l~ 228 (376)
+++++.+++++.++++.|.+.+++.+||+++ + +++|+++..++++++....... +........++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG----G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC----C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 5778999999999999999999999999963 5 8999999999998775332100 00001112222221
Q ss_pred cccc-----------ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 229 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 229 i~~~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
..| ...+.++|..++.++..++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 111 12355678888999999999999999999999999999987 99999999999864
No 171
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.14 E-value=2.7e-10 Score=103.92 Aligned_cols=112 Identities=15% Similarity=0.264 Sum_probs=96.6
Q ss_pred CCC--CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163 149 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 226 (376)
Q Consensus 149 ~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~ 226 (376)
+|. .....+.+++++.+-.++-.+.|.+|+||+|. .. +++|++|.+|++.. . -+.
T Consensus 193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~-------~------~~t---- 249 (432)
T COG4109 193 IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDK-------K------PST---- 249 (432)
T ss_pred hccccccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcC-------C------CCc----
Confidence 444 56778899999999999999999999999976 44 89999999999761 0 122
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
.+..+|+++++++.+.+++..+.++|.-.++.-+||+|++.+++|++|++|+++.+.
T Consensus 250 --------~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 250 --------TIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred --------cHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 234459999999999999999999999999999999999999999999999998665
No 172
>PRK11573 hypothetical protein; Provisional
Probab=99.12 E-value=1.1e-09 Score=106.61 Aligned_cols=123 Identities=12% Similarity=0.223 Sum_probs=100.4
Q ss_pred ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163 235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 311 (376)
Q Consensus 235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 311 (376)
+++++|. .++.+++.++++.++++.+.+++.+++||.+++ +.++|++..+|++....++. . .......+
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~--~-----~~~~~l~~- 259 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK--E-----FTKENMLR- 259 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC--c-----CCHHHHHh-
Confidence 5667785 469999999999999999999999999999764 79999999999987543221 0 11221111
Q ss_pred CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhcC
Q 017163 312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 376 (376)
Q Consensus 312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~~ 376 (376)
++ +++..++.+.++.++++.|.+++.|-..|+| |-|...|+||..||+..++|.
T Consensus 260 ---------~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivGe 313 (413)
T PRK11573 260 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVGD 313 (413)
T ss_pred ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhCC
Confidence 22 4688999999999999999999999999999 689999999999999999873
No 173
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=1.7e-09 Score=84.75 Aligned_cols=104 Identities=21% Similarity=0.368 Sum_probs=85.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
+++++.++.++.+++..|.+.+...+||+++ ++ +++|+++..++++.. . ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~----~---------~~~--------- 53 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP----E---------EEQ--------- 53 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc----c---------cch---------
Confidence 4678899999999999999989999999975 46 899999999987510 0 011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
+.++|..++.++..++++.++++.|.+++.+.+||+| +|+++|+++..|+..
T Consensus 54 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 54 ---LALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred ---HHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 2233666788999999999999999999999999998 479999999999864
No 174
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.09 E-value=1.1e-09 Score=87.71 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=87.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 231 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~ 231 (376)
++.++.+++++.+|++.|...+ .+.+||+++ | +++|+++..++++++...... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~~l~~~~~~~~~~-----~~~----------- 58 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD----G---RPVGLIMREALMELLSTPYGR-----ALY----------- 58 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC----C---eeEEEEEHHHHHHHHhchhhH-----HHH-----------
Confidence 4567889999999999998877 889999963 5 799999999998755321100 000
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCC---EEEEECCCCcEEEEEeHHHHHH
Q 017163 232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~---~lpVvd~~g~lvGiis~~Di~~ 288 (376)
....++++|..++.++.+++++.++++.|.+++.. ..||++++|+++|++|..|++.
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 01134556888899999999999999999988753 4578888999999999999864
No 175
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.05 E-value=2e-09 Score=88.53 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=79.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCC-ccccc---ccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQ---QPVSSIQ 228 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~-~~~~~---~~i~~l~ 228 (376)
++.++.+++++.+|++.|.+++.+.+||+|+ +| +++|++|..|+++++.......... ..... ..+.++.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 4678999999999999999999999999975 56 8999999999999775321110000 00000 0000110
Q ss_pred ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC
Q 017163 229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 274 (376)
Q Consensus 229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~ 274 (376)
. ...+.+.|..+++++.+++++.+|+++|.+++++++||+|++
T Consensus 76 ~---~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 76 T---KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred h---hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 0 001122245678999999999999999999999999999864
No 176
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.05 E-value=1.6e-09 Score=107.58 Aligned_cols=116 Identities=12% Similarity=0.226 Sum_probs=93.0
Q ss_pred CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163 147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 226 (376)
Q Consensus 147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~ 226 (376)
+++|.+++.++.+++++.++++.|.+++++.+||+|+ ++ +++|+++..|+++.+...... ...
T Consensus 338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~---- 400 (454)
T TIGR01137 338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKAN-------PDD---- 400 (454)
T ss_pred HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCCC-------cCC----
Confidence 4578889999999999999999999999999999975 56 899999999998865421100 111
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163 227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 290 (376)
Q Consensus 227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~ 290 (376)
.+.++|.+++.++.+++++.+++++|.+++ .|+|+++|+++|+||++|++..+
T Consensus 401 --------~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 401 --------AVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --------CHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 244557788889999999999999998764 35565689999999999998753
No 177
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.03 E-value=6.8e-10 Score=76.93 Aligned_cols=55 Identities=31% Similarity=0.509 Sum_probs=51.4
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 237 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 237 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
+++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.+.
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 5678889999999999999999999999999999999999999999999998653
No 178
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.00 E-value=5.5e-09 Score=102.68 Aligned_cols=121 Identities=18% Similarity=0.318 Sum_probs=100.1
Q ss_pred ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEC-CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163 235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 311 (376)
Q Consensus 235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd-~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 311 (376)
.++++|. .++.++..+.++.++.+.+.+++.+++||++ +.+.++|++..+|++.....+.. .. ....
T Consensus 207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~-----~~~~---- 276 (429)
T COG1253 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DL-----DLRV---- 276 (429)
T ss_pred EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-cc-----chhh----
Confidence 3455575 4689999999999999999999999999999 56799999999999986654321 11 1111
Q ss_pred CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhcC
Q 017163 312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 376 (376)
Q Consensus 312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~~ 376 (376)
.. +++..++++.++.+++++|.+.+.|-..|+| |-|.+.|+||+.||+..++|.
T Consensus 277 ---------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvGe 330 (429)
T COG1253 277 ---------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVGE 330 (429)
T ss_pred ---------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhCC
Confidence 11 2688999999999999999999999999999 689999999999999999873
No 179
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.00 E-value=1.4e-09 Score=75.26 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=50.7
Q ss_pred cCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 321 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 321 im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
+|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+|++++++.
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence 6778999999999999999999999999999999 47999999999999999863
No 180
>PRK11573 hypothetical protein; Provisional
Probab=98.99 E-value=2e-08 Score=98.01 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=107.5
Q ss_pred hhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 017163 45 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 124 (376)
Q Consensus 45 l~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~ 124 (376)
|++.++.|+|-.-.++++++.+.++.++++.+.+.+.+..||++.+..+++|++...|++..+... ...
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~----~~~------- 252 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK----KEF------- 252 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc----CcC-------
Confidence 356789999998999999999999999999999999999999998878899999999998643210 111
Q ss_pred hhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH
Q 017163 125 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 204 (376)
Q Consensus 125 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~ 204 (376)
....+. . ..+++..|+++.++.++++.|.+++.|-..|+|+ .| ...|++|..|++.
T Consensus 253 -~~~~l~---~--------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~~GiVTleDilE 308 (413)
T PRK11573 253 -TKENML---R--------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILE 308 (413)
T ss_pred -CHHHHH---h--------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---CeEEEeeHHHHHH
Confidence 011111 0 1457889999999999999999999999999976 67 7999999999999
Q ss_pred HHhhhc
Q 017163 205 CICRHF 210 (376)
Q Consensus 205 ~l~~~~ 210 (376)
-+....
T Consensus 309 eivGei 314 (413)
T PRK11573 309 EIVGDF 314 (413)
T ss_pred HHhCCC
Confidence 887544
No 181
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.93 E-value=6.2e-09 Score=101.20 Aligned_cols=116 Identities=17% Similarity=0.285 Sum_probs=101.0
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 017163 234 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 308 (376)
Q Consensus 234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~ 308 (376)
..++..|+..++++.++.|+.+++..+.+. .+..+.|+|++++++|+++.++++..-. +..+.+
T Consensus 132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~- 200 (451)
T COG2239 132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKD- 200 (451)
T ss_pred hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHH-
Confidence 456777999999999999999999999843 4678999999999999999999875211 245565
Q ss_pred HhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163 309 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 309 l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
+|.+.++++.+++..+++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus 201 ------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi 252 (451)
T COG2239 201 ------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI 252 (451)
T ss_pred ------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence 7777899999999999999999999999999999 589999999999998765
No 182
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.81 E-value=9e-08 Score=91.67 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=91.5
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 321 (376)
Q Consensus 242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 321 (376)
.......++.+..++++.|...+...+.|+|+++++.|.++..++....+.. .++.+ .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------~ 307 (363)
T TIGR01186 250 TGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQD-------------V 307 (363)
T ss_pred ccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhh-------------h
Confidence 3444566778899999999999999999999999999999999987755422 22333 2
Q ss_pred CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
+...+.++.+++++.+++..|..++.. +|||| ++|+++|+||..+++++|.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 308 LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred hccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence 334577899999999999999999998 99999 57999999999999999864
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=1.8e-07 Score=90.78 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=87.6
Q ss_pred ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCCcc
Q 017163 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC 326 (376)
Q Consensus 247 v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~ 326 (376)
..++.+..++++.|...+.+++.|+|++++++|+++..++.....++ .++.+ .+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------~~~~~~ 347 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDA-------------ALIDAP 347 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhh-------------hhccCC
Confidence 34667889999999999999999999999999999999997754322 22333 222357
Q ss_pred eEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 327 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 327 ~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
.++.+++++.+++..|..+... +|||| ++|+++|+||..+++++|.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence 7999999999999999998776 99999 57999999999999999864
No 184
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.68 E-value=2.7e-07 Score=90.75 Aligned_cols=129 Identities=20% Similarity=0.339 Sum_probs=107.1
Q ss_pred hhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 017163 45 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 124 (376)
Q Consensus 45 l~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~ 124 (376)
|.+.++.++|-+-.+++.++.+.++.++++.+.+.+.+..||++...+.++|++...|++........ ..
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~------- 272 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DL------- 272 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---cc-------
Confidence 46788999999889999999999999999999999999999999777889999999999965532210 00
Q ss_pred hhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH
Q 017163 125 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 204 (376)
Q Consensus 125 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~ 204 (376)
.. . ..-+++..|++..++.++++.|.+.+.|-..|+|+ -| .+.|++|..||+.
T Consensus 273 -~~------~--------------~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~GlVTleDIiE 325 (429)
T COG1253 273 -DL------R--------------VLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVEGLVTLEDIIE 325 (429)
T ss_pred -ch------h--------------hcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeEEEeEHHHHHH
Confidence 00 0 01237889999999999999999999999999987 57 7999999999999
Q ss_pred HHhhhc
Q 017163 205 CICRHF 210 (376)
Q Consensus 205 ~l~~~~ 210 (376)
.+....
T Consensus 326 eIvGei 331 (429)
T COG1253 326 EIVGEI 331 (429)
T ss_pred HHhCCC
Confidence 886543
No 185
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.54 E-value=1.9e-07 Score=87.21 Aligned_cols=107 Identities=18% Similarity=0.265 Sum_probs=92.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 017163 243 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 319 (376)
Q Consensus 243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 319 (376)
+++.++|+.++.++++....++++.+||..+ .++|+|+||.+|+-.+-. . ...+.+
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~-~--------~~~~~~------------ 175 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLED-N--------SLLVSD------------ 175 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhc-c--------cchhhh------------
Confidence 5678899999999999999999999999963 368999999999977621 1 234444
Q ss_pred ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 320 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 320 ~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
+|..+.++...+.+|.++-+.|.+++-.+||||| +.|.++.+|+++|+.+.
T Consensus 176 -vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 176 -VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN 226 (503)
T ss_pred -hcccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence 7777788999999999999999999999999999 58999999999999875
No 186
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.54 E-value=1.1e-06 Score=82.15 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=117.5
Q ss_pred HcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCc
Q 017163 78 EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL 154 (376)
Q Consensus 78 ~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (376)
.+.....|++.+ ...-+|.++....+..+...+ .+.+.++ ....+..|+.-+.. ...++
T Consensus 57 r~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g-------------~~~~p 118 (503)
T KOG2550|consen 57 RNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENG-------------FINNP 118 (503)
T ss_pred hcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhcc-------------cccCC
Confidence 344455687754 345567777776665554221 2333222 22234455543332 23466
Q ss_pred eEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccc
Q 017163 155 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 234 (376)
Q Consensus 155 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~ 234 (376)
+.+.|+.++.++++.-..++...+||.....-.+ +++|++|-+|+ .|+.++ ..
T Consensus 119 ~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~---KLvG~vtsrdi-~f~~~~-----------~~------------ 171 (503)
T KOG2550|consen 119 IVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGS---KLVGIITSRDI-QFLEDN-----------SL------------ 171 (503)
T ss_pred cccCCcccchhhhhhcccccccccccccCCcccc---eeEEEEehhhh-hhhhcc-----------cc------------
Confidence 7889999999999999999999999996422223 89999999998 444211 11
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
-+.++|....++.....++.++-+++.+++...+||||++|+++.++++.|+.+
T Consensus 172 ~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 172 LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK 225 (503)
T ss_pred hhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhh
Confidence 234457777789999999999999999999999999999999999999999976
No 187
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.52 E-value=1.8e-06 Score=82.74 Aligned_cols=110 Identities=11% Similarity=0.209 Sum_probs=88.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
......++.+..+++..|...+...+.|++. ++ ++.|.++.+++..+.... ..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~--------- 303 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA------------QG--------- 303 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC------------Cc---------
Confidence 3345667788999999999999999999975 55 799999999987754321 01
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 293 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~ 293 (376)
+.+.+...+.++.+++++.+++..|.+++.. +||+|++|+++|+||+.++...+...
T Consensus 304 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 304 ---LQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred ---hhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 1222445677899999999999999999998 99999999999999999999876543
No 188
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.1e-06 Score=81.65 Aligned_cols=121 Identities=14% Similarity=0.289 Sum_probs=101.2
Q ss_pred ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEeHHHHHHHHhccc-ccccccccccHHHHHh
Q 017163 235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQ 310 (376)
Q Consensus 235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiis~~Di~~~~~~~~-~~~~~~~~~~v~~~l~ 310 (376)
+|.|+|. ..+..+..+++..++.+.+...-..++|+-.+ -+.++|++..+|+.++..++. +.. ..+..++
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k-----~d~~~~a- 274 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-----EDILRAA- 274 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccH-----hHHHHHh-
Confidence 5677774 46899999999999999999999999999854 357999999999999876554 322 2333322
Q ss_pred cCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 311 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 311 ~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
.+++.++.++++.+-+..|.+++-|--.||| |-|.+.|+||+.||+..++|
T Consensus 275 -------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 275 -------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred -------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence 2577999999999999999999999999999 68999999999999999876
No 189
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.45 E-value=7.3e-07 Score=77.54 Aligned_cols=119 Identities=13% Similarity=0.352 Sum_probs=98.7
Q ss_pred cccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163 236 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 312 (376)
Q Consensus 236 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~ 312 (376)
|+++|- ...+++..+.++.+++..+.+...|++||+.+ .+.+.|++-..|++........ ...+.+.|
T Consensus 69 vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL--- 139 (293)
T COG4535 69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL--- 139 (293)
T ss_pred HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc---
Confidence 444453 35789999999999999999999999999975 4689999999999997653321 13445433
Q ss_pred CCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 313 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 313 ~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
+|...++.+-.+...++.+..++.|-..||| |=|-+-|.||..||+..++|
T Consensus 140 -----------RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 140 -----------RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred -----------ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence 5788899999999999999999999999999 57999999999999999987
No 190
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.43 E-value=4.1e-06 Score=77.84 Aligned_cols=129 Identities=20% Similarity=0.293 Sum_probs=106.9
Q ss_pred hhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhh
Q 017163 46 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 125 (376)
Q Consensus 46 ~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~ 125 (376)
..-|+.|+|-.-+.+..+|.|++.++..+.+...-...+|+|..+..+.+|++-.+|+++.+.+..+ ++.+++
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~d~--- 270 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKEDI--- 270 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHhHH---
Confidence 3467899998889999999999999999999999999999999888889999999999987754321 222221
Q ss_pred hHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHH
Q 017163 126 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 205 (376)
Q Consensus 126 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~ 205 (376)
.+ .-.+++.++..+++.+-+..+.+++-|-..|+|+ -| .+.|++|.+||+.-
T Consensus 271 --------~~--------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---YG---~i~GLVTLEDIlEE 322 (423)
T COG4536 271 --------LR--------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---YG---DIQGLVTLEDILEE 322 (423)
T ss_pred --------HH--------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---cC---cEEeeeeHHHHHHH
Confidence 11 1346889999999999999999999999999976 67 89999999999996
Q ss_pred Hhhh
Q 017163 206 ICRH 209 (376)
Q Consensus 206 l~~~ 209 (376)
+.--
T Consensus 323 IVGd 326 (423)
T COG4536 323 IVGD 326 (423)
T ss_pred Hhcc
Confidence 6543
No 191
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=5.8e-06 Score=80.29 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=85.1
Q ss_pred eCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccccc
Q 017163 157 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 236 (376)
Q Consensus 157 v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v 236 (376)
..++.+..+|+..|...+...+.|+|. ++ +++|+++..++.+..... .++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~------------ 339 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QGL------------ 339 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cch------------
Confidence 446778999999999999999999976 66 899999999997643211 111
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163 237 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 292 (376)
Q Consensus 237 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~ 292 (376)
.+.+.....++.+++++.+++..|.+.... +||+|++|+++|+|++.+++..+..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 340 DAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred hhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 122344677899999999999999987766 9999999999999999999987654
No 192
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.35 E-value=9.9e-07 Score=86.55 Aligned_cols=137 Identities=20% Similarity=0.332 Sum_probs=106.1
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-----CcEEEEEeHHHHHHHHhccccccc--c---c---c
Q 017163 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-----DSLLDIYSRSDITALAKDKAYAQI--H---L---D 301 (376)
Q Consensus 235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-----g~lvGiis~~Di~~~~~~~~~~~~--~---~---~ 301 (376)
.++++|+.+++++..-+.+....+.+...+..+.||||+. +++.|+|-++.++.+++.+.+..- . + .
T Consensus 583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~ 662 (762)
T KOG0474|consen 583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR 662 (762)
T ss_pred hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence 4689999999999999999999999999999999999962 589999999999998886555311 0 0 1
Q ss_pred cccHHHHHhcCCC--------CCCC-c----ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHH
Q 017163 302 EMNIHQALQLGQD--------ANPS-L----GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSD 368 (376)
Q Consensus 302 ~~~v~~~l~~~~~--------~~~~-~----~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~D 368 (376)
..+.+++-+.... +... | .+|...++++..++++..+...+.+-+.|++.||+. .++++|++|++|
T Consensus 663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~~~gilTR~D 741 (762)
T KOG0474|consen 663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNRVVGILTRKD 741 (762)
T ss_pred cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC-CCceeEEEehhh
Confidence 1222332221110 0000 0 168888999999999999999999999999999995 677899999999
Q ss_pred HHHH
Q 017163 369 VFRF 372 (376)
Q Consensus 369 il~~ 372 (376)
+.++
T Consensus 742 ~~~~ 745 (762)
T KOG0474|consen 742 LARY 745 (762)
T ss_pred hhhH
Confidence 9864
No 193
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.32 E-value=4.8e-06 Score=72.54 Aligned_cols=117 Identities=11% Similarity=0.121 Sum_probs=96.6
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccc
Q 017163 150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 229 (376)
Q Consensus 150 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i 229 (376)
....++++..+.++.+++..+.+...+|+||+.++ .. .+.||+-.+|+++|+...... -.+++
T Consensus 75 PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed--kD---~v~GIL~AKDLL~~~~~~~~~---------F~i~~--- 137 (293)
T COG4535 75 PRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--KD---HVEGILLAKDLLPFMRSDAEP---------FDIKE--- 137 (293)
T ss_pred cHHHheeccccCCHHHHHHHHHHhccccCCcccCC--ch---hhhhhhhHHHHHHHhcCCccc---------ccHHH---
Confidence 35578999999999999999999999999999652 33 799999999999987543221 11222
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 017163 230 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 293 (376)
Q Consensus 230 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~ 293 (376)
+-+|.+.++.+..+...++-+...+.+-..|+|+-|-+-|.+|..|++..+...
T Consensus 138 ----------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGd 191 (293)
T COG4535 138 ----------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGD 191 (293)
T ss_pred ----------hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcc
Confidence 235788899999999999999999999999999999999999999999977643
No 194
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.18 E-value=3.9e-06 Score=66.74 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=49.4
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
++.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+
T Consensus 59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 466778888999999999999999999999999999999999999999999864
No 195
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.12 E-value=5.2e-06 Score=81.64 Aligned_cols=144 Identities=15% Similarity=0.226 Sum_probs=106.3
Q ss_pred CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhh-ccCC-CC--Ccccc-
Q 017163 146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FKHS-SS--SLPIL- 220 (376)
Q Consensus 146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~-~~~~-~~--~~~~~- 220 (376)
++++|.++++++..-+.+....+.+.....+..||+|+.+.+. ...+.|++-.+.++..+.+. +.+. +. ..+..
T Consensus 584 a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~ 662 (762)
T KOG0474|consen 584 AGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR 662 (762)
T ss_pred HhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence 4678999999999999999999999999999999998633221 12789999999988877443 1111 00 00000
Q ss_pred ----------ccccccccccccc----cccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHH
Q 017163 221 ----------QQPVSSIQLGTWV----PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 286 (376)
Q Consensus 221 ----------~~~i~~l~i~~~~----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di 286 (376)
..+++++.+.... .....+|++.+.++.+++++..++.++.+-+.+++.||++..+++|++|++|+
T Consensus 663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~ 742 (762)
T KOG0474|consen 663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL 742 (762)
T ss_pred cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence 0122333222111 13456788999999999999999999999999999999998999999999999
Q ss_pred HHHH
Q 017163 287 TALA 290 (376)
Q Consensus 287 ~~~~ 290 (376)
...-
T Consensus 743 ~~~~ 746 (762)
T KOG0474|consen 743 ARYR 746 (762)
T ss_pred hhHH
Confidence 8643
No 196
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.97 E-value=2.4e-05 Score=50.87 Aligned_cols=47 Identities=28% Similarity=0.489 Sum_probs=42.8
Q ss_pred ceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163 326 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 326 ~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
+.++.+++++.++++.|...+.+++||+++ +++++|+++..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence 567899999999999999999999999994 68999999999998875
No 197
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.93 E-value=2.7e-05 Score=61.84 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=45.8
Q ss_pred cCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 321 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 321 im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
+|..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence 6777888999999999999999999999999999 4699999999999864
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.88 E-value=5e-05 Score=49.28 Aligned_cols=47 Identities=30% Similarity=0.537 Sum_probs=42.4
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163 244 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 290 (376)
Q Consensus 244 ~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~ 290 (376)
+.++.+++++.++++.|.+++.+.+||++++++++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 45788999999999999999999999999889999999999997643
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.0004 Score=68.83 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=89.1
Q ss_pred ceEecCC-CCHHHHHHHHHhCCCCEEEEEC--CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC----CCC
Q 017163 244 FAMLRPT-ASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ----DAN 316 (376)
Q Consensus 244 ~~~v~~~-~~l~~a~~~m~~~~i~~lpVvd--~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~----~~~ 316 (376)
+.+++.+ .++.+...+|.+...+..||+= +..+++|.+.++|+...+.+...........+. -+.+... ..+
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGIP 636 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCCC
Confidence 5566555 8999999999999999999884 356899999999987754421110000000011 0110000 011
Q ss_pred CCc---ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163 317 PSL---GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 317 ~~~---~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l 373 (376)
.+. .+|...+.++...++...+++++.+-+.+.+.|.. +|++.|+||..|++++.
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 122 26778899999999999999999999999887765 49999999999999875
No 200
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.38 E-value=0.0013 Score=60.58 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=114.1
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccc
Q 017163 150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 229 (376)
Q Consensus 150 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i 229 (376)
+.+.++.++-+ +.||+++ -+++.+.. +| +++-+=|..+|+..-..-+ ...-+.....
T Consensus 214 l~KTIvFitHD--LdEAlri-----G~rIaimk----dG---~ivQ~Gtp~eIl~~PAndY---------V~~Fv~~v~~ 270 (386)
T COG4175 214 LKKTIVFITHD--LDEALRI-----GDRIAIMK----DG---EIVQVGTPEEILLNPANDY---------VRDFVRNVDR 270 (386)
T ss_pred hCCeEEEEecC--HHHHHhc-----cceEEEec----CC---eEEEeCCHHHHHcCccHHH---------HHHHHhcCCh
Confidence 45677888766 8888875 36788874 57 8999999999886221100 0000111100
Q ss_pred cccccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 017163 230 GTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ 307 (376)
Q Consensus 230 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~ 307 (376)
. ..-+.+++|.+ ..+.-.+...-..+++.+.....+.+.+++..++.+|+++..++....
T Consensus 271 ~-~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~----------------- 332 (386)
T COG4175 271 S-RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAA----------------- 332 (386)
T ss_pred h-heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhccc-----------------
Confidence 0 00133455653 222222233345678888888888888888778899999999876630
Q ss_pred HHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 308 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 308 ~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
+..++.++..++++.+.+..+.+.... ++||| |+++++|+|+...++.+|.+
T Consensus 333 --------------~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvd-e~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 333 --------------LIDDVLTVDADTPLSEILARIRQAPCP-VAVVD-EDGRYVGIISRGELLEALAR 384 (386)
T ss_pred --------------ccccccccCccchHHHHHHHHhcCCCc-eeEEc-CCCcEEEEecHHHHHHHHhc
Confidence 012466888999999999998888775 78999 58999999999999999976
No 201
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.005 Score=61.28 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=95.1
Q ss_pred CceEeCCC-CCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC---Ccccccccccccc
Q 017163 153 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPILQQPVSSIQ 228 (376)
Q Consensus 153 ~~v~v~~~-~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~---~~~~~~~~i~~l~ 228 (376)
++..+..+ +++.|...+|.+...+..||+-+ .++. .++|.+..+++...+......... .....+.+.....
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 46666665 89999999999999999999854 2334 899999999988766422111100 0012223333222
Q ss_pred cccc-ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163 229 LGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 290 (376)
Q Consensus 229 i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~ 290 (376)
-+.. .-..+++|...+.++...++..-+++++.+-+++.+.|. ++|++.|+||.+|++...
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 2111 124567788889999999999999999999999999776 699999999999998754
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.88 E-value=0.0048 Score=59.72 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=72.8
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 314 (376)
Q Consensus 235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 314 (376)
++..+|.+.......+.+ .|++. ++.+++.|+|+ |+++..+...+.+... +.++.+ +
T Consensus 275 ~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~----- 331 (382)
T TIGR03415 275 TARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L----- 331 (382)
T ss_pred eHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-----
Confidence 345567433323233222 44444 78899999986 8888877665443111 112222 1
Q ss_pred CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163 315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375 (376)
Q Consensus 315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~ 375 (376)
.....++++++++.+++..+.+++.. ++|+| + |+++|+|+..+++.+|.+
T Consensus 332 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 --------EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred --------cccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHhc
Confidence 12466899999999999999988765 88998 4 999999999999999875
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.0085 Score=60.85 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=52.9
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC--CCcEEEEEeHHHHHHHHh
Q 017163 231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAK 291 (376)
Q Consensus 231 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~--~g~lvGiis~~Di~~~~~ 291 (376)
.+...|.++|.+++.++..+.|..|..+.+....++.+|+||+ +.-++|.++++.+..++.
T Consensus 585 ~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 585 VHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred eeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence 4455789999999999999999999988887777999999985 457899999999988765
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.11 E-value=0.091 Score=47.36 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=69.5
Q ss_pred CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCC-CCCccccccccccccc
Q 017163 151 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSSLPILQQPVSSIQL 229 (376)
Q Consensus 151 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~-~~~~~~~~~~i~~l~i 229 (376)
.+.++.|+-| +.||+++ ..++.|.+ .| +++-.-++.+|++.-...|-.. -+........+...
T Consensus 186 ~kTivfVTHD--idEA~kL-----adri~vm~----~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~-- 249 (309)
T COG1125 186 GKTIVFVTHD--IDEALKL-----ADRIAVMD----AG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLV-- 249 (309)
T ss_pred CCEEEEEecC--HHHHHhh-----hceEEEec----CC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchh--
Confidence 4567777765 7888876 46788986 36 8999999888876332211100 00000000111111
Q ss_pred cccccccccccCCCc----eEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163 230 GTWVPRIGEANGRPF----AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288 (376)
Q Consensus 230 ~~~~~~v~~~m~~~~----~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~ 288 (376)
.+.+.+.+.. -.........+++..+...+.+.+||+|++|+++|.+|+.++..
T Consensus 250 -----~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 250 -----SVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred -----hHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 1111111110 11223334456888888899999999999999999999999875
No 205
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.13 E-value=0.043 Score=50.85 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=63.2
Q ss_pred HHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccCCC
Q 017163 164 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRP 243 (376)
Q Consensus 164 ~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~ 243 (376)
..++..+.+.+.+.+.+++. .+ +.+|+++..+.... .+..+
T Consensus 296 ~~al~~~~~~~~~~~~~~~~---~~---~~~g~v~~~~~~~~---------------------------------~~~~~ 336 (386)
T COG4175 296 RVALKLLRDEGREYGYAVDR---GN---KFVGVVSIDSLVKA---------------------------------ALIDD 336 (386)
T ss_pred chhhhhhhhccchhhHHHhc---cC---ceeeEEeccchhcc---------------------------------ccccc
Confidence 34556666655555555532 34 57777777666542 13346
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 244 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 244 ~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
+.++..++++.+.+..+.+... .+||+|++|+++|++++..++.++.
T Consensus 337 ~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 337 VLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 7788999999998888876654 6899999999999999999998664
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.84 E-value=0.92 Score=41.09 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=69.7
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcc-------cc-cc-cccccccHHHHHhcC
Q 017163 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK-------AY-AQ-IHLDEMNIHQALQLG 312 (376)
Q Consensus 242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~-------~~-~~-~~~~~~~v~~~l~~~ 312 (376)
..++.++.+ +.||+++- +.+.|.+ +|+++=+-+..+++.--++. .. .. -.+...++.++....
T Consensus 187 kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 187 KTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred CEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 456666666 78888875 4688886 89999999988876532210 00 00 011112233322111
Q ss_pred CCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 313 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 313 ~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
.. . .--.........+++..+...+...+|||| +.|+++|.||..+++..
T Consensus 259 ~~------~---~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 EP------A---DGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE 308 (309)
T ss_pred cc------c---cCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence 10 0 011122334445588888999999999999 58999999999999865
No 207
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=92.42 E-value=0.3 Score=47.34 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=41.2
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 291 (376)
Q Consensus 242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~ 291 (376)
..+.++++++++.+++..+.+.+. -+||+|+ |+++|+|++.+++..+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 333 AAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred ccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 357789999999999999888765 5889985 99999999999988653
No 208
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=75.00 E-value=10 Score=39.56 Aligned_cols=97 Identities=12% Similarity=0.143 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc-ccccccccccc-----cHHHHHhcCCCCCCCcccCCCcc
Q 017163 253 LGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD-KAYAQIHLDEM-----NIHQALQLGQDANPSLGFNGQRC 326 (376)
Q Consensus 253 l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~-~~~~~~~~~~~-----~v~~~l~~~~~~~~~~~im~~~~ 326 (376)
+.+..+.+...+ ..+.++|.+|.++++....++...+.. +......|.+. -+.-++. ...+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~------------~~~p 127 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAI------------SGQP 127 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHh------------cCCc
Confidence 444555565555 688999999999999999988775543 22222222221 1233222 2345
Q ss_pred eEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeH
Q 017163 327 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 366 (376)
Q Consensus 327 ~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~ 366 (376)
+.+....-..+... .......||.|+ +|+++|+|+.
T Consensus 128 v~v~g~EH~~~~~~---~~~c~aaPI~d~-~G~liGvl~l 163 (638)
T PRK11388 128 VKTMGDQHFKQALH---NWAFCATPVFDS-KGRLTGTIAL 163 (638)
T ss_pred eEEecHHHHHHhcc---CceEEeeEEEcC-CCCEEEEEEE
Confidence 55555555554443 345567899995 7999999974
No 209
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=67.42 E-value=7.6 Score=40.38 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=47.0
Q ss_pred cCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeC-CCCeEEEEEeHHHHHHHH
Q 017163 321 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFRFL 373 (376)
Q Consensus 321 im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~-~~~~~~GvIs~~Dil~~l 373 (376)
+|-+++..+..++|..+..+.+....++.+|+||+ ++.-++|.|+++.+...|
T Consensus 593 iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 593 IMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 79999999999999999999888888999999985 345799999999988765
No 210
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=64.51 E-value=11 Score=38.00 Aligned_cols=114 Identities=13% Similarity=0.197 Sum_probs=74.0
Q ss_pred cccccCC--CceEecCCCCHH-HHHHHHHhCCCCEEEEECCCC--cEEEEEeHHHHHHHHhcccccccccccccHHHHHh
Q 017163 236 IGEANGR--PFAMLRPTASLG-SALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ 310 (376)
Q Consensus 236 v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~g--~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~ 310 (376)
++++|.+ .+.....+..+. +.......++++++||.+.+. .+.|.+....+.....+..+ ...++..
T Consensus 206 ~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~-----~~~~v~~--- 277 (498)
T KOG2118|consen 206 VGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPL-----EPLPVSE--- 277 (498)
T ss_pred HHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccccc-----ccccchh---
Confidence 3444542 455666677665 555566789999999997542 33333333333222111111 1233333
Q ss_pred cCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHH
Q 017163 311 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDV 369 (376)
Q Consensus 311 ~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Di 369 (376)
.+..+...+..++++.+.++.+...+.|-+.|... ..-+|++++.|+
T Consensus 278 ----------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~--~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 278 ----------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG--HVDIFVLTLEDL 324 (498)
T ss_pred ----------hhccccccCCCcccHHHHHHHHhhhhceeEEEecC--CcceeeEeccch
Confidence 44567888999999999999999999998877773 667899999887
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=59.99 E-value=43 Score=34.95 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=56.8
Q ss_pred HHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccCCC
Q 017163 164 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRP 243 (376)
Q Consensus 164 ~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~ 243 (376)
.+..+.+...+ ..+.+.|. +| .++++....++++.+....-. ++ ..+....++.-.+|+-- ....
T Consensus 62 ~~l~~~l~~~~-~~~~l~D~---~G---~vL~~~g~~~~~~~~~~~~~~-~G-~~w~E~~~GTnaig~al------~~~~ 126 (638)
T PRK11388 62 EDAWEYMADRE-CALLILDE---TG---CILSRNGDPQTLQQLSALGFN-DG-TYCAEGIIGTNALSLAA------ISGQ 126 (638)
T ss_pred HHHHHHhcCCC-cEEEEEcC---Cc---eEEEEeCCHHHHHHHHHcCCc-cC-CccchhccCcCHHHHHH------hcCC
Confidence 33444454445 67888876 67 899999888887765431111 00 11112222222222211 1223
Q ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEe
Q 017163 244 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 282 (376)
Q Consensus 244 ~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis 282 (376)
++.+.... .-++.+......+.||.|.+|+++|+++
T Consensus 127 pv~v~g~E---H~~~~~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 127 PVKTMGDQ---HFKQALHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ceEEecHH---HHHHhccCceEEeeEEEcCCCCEEEEEE
Confidence 44554443 3344455567789999999999999996
No 212
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=56.66 E-value=25 Score=25.51 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=23.7
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHhccccc
Q 017163 265 VSSIPIVDDNDSLLDIYSRSDITALAKDKAYA 296 (376)
Q Consensus 265 i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~ 296 (376)
...+-++|++|+.+|+++.++.+.++......
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lD 43 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKGLD 43 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-E
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcCCc
Confidence 45677899999999999999999988765443
No 213
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=48.57 E-value=2.5e+02 Score=26.84 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163 153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 232 (376)
Q Consensus 153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~ 232 (376)
..+.+.+.+++.+....+.+++ ++....+.+++.+.... .+.++.|.+
T Consensus 46 ~~v~I~~Gs~~~~i~~~Le~~~---------------------vI~~~~~f~~~~~~~~~-----------~~~lkaG~Y 93 (342)
T COG1559 46 KTVTIPPGSSVSEIGSELEKQK---------------------VIKNARVFRLYLKYNPA-----------AGSLKAGEY 93 (342)
T ss_pred eEEEECCCCCHHHHHHHHHhcC---------------------ccccHHHHHHHHHhcCc-----------cCCcCCcee
Confidence 6889999999999999887654 45556677777654332 223445554
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 312 (376)
Q Consensus 233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~ 312 (376)
.+.+.++..+++++|.+-+.....++ +..=.+.+|+...+.+..............++...-
T Consensus 94 -------------~l~~~ms~~~il~~L~~Gk~~~~~~~-----ipEG~t~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~ 155 (342)
T COG1559 94 -------------RLRPGMSAADILKLLESGKSAQFKVT-----IPEGYTLKQIAKKLAEAPVLDGVLDGLAIAEIAARL 155 (342)
T ss_pred -------------ecCCCCCHHHHHHHHhcCccccceEe-----cCCCccHHHHHHHHhcchhhhhhhhhhhhHHHHHhc
Confidence 47888999999999987655444443 222246777777655433322211122223322111
Q ss_pred CCC-C-CCcccCCCcceEecCCCCHHHHHHHHhcCCCcE
Q 017163 313 QDA-N-PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRR 349 (376)
Q Consensus 313 ~~~-~-~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~ 349 (376)
... . ..-|..-+.-..++++++-.++++.|.+.--..
T Consensus 156 p~~~~~~~EG~l~PdTY~~~~g~~~~~Ii~~mi~~~~~~ 194 (342)
T COG1559 156 PKLDKERLEGYLFPDTYEFTRGTSAEDIIKRMIKAMDKK 194 (342)
T ss_pred CCCcCCCCceeecCceeeeCCCCCHHHHHHHHHHHHHHH
Confidence 100 0 011222245567889999999999998765443
No 214
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=43.27 E-value=49 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=18.5
Q ss_pred CcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163 347 VRRLVIVEAGSKRVEGIISLSDVFRF 372 (376)
Q Consensus 347 ~~~l~VVd~~~~~~~GvIs~~Dil~~ 372 (376)
...+-+|| ++|..+|++++++-++.
T Consensus 12 ~~~VrlI~-~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLID-EDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE--TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEEC-CCCcEeceEEHHHHHHH
Confidence 35677899 57999999999998765
No 215
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=42.41 E-value=66 Score=32.48 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=83.1
Q ss_pred HHHhhhCCccccCCCCccEEEEcCCCCHH-HHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHH
Q 017163 42 SSFLSTHTVYELLPDSGKVTALDVNLAVK-QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE 120 (376)
Q Consensus 42 ~~fl~~~~~~d~~p~~~~vi~l~~~~~v~-~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~ 120 (376)
..-|...++.|+|-+-..+..++.+..+. +......+.|....||++.+....+|.+=...++.++.... ++
T Consensus 198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~----~~--- 270 (498)
T KOG2118|consen 198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV----PL--- 270 (498)
T ss_pred hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc----cc---
Confidence 34556677888888888899999999998 55556669999999999987554444421112222221100 11
Q ss_pred HHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehh
Q 017163 121 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 200 (376)
Q Consensus 121 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~ 200 (376)
....|. ..+...+..+++++++.+.++.+.+.+.|.+.|.+. . .-+++++..
T Consensus 271 -----~~~~v~----------------~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~----~---~~~~~~~l~ 322 (498)
T KOG2118|consen 271 -----EPLPVS----------------ESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG----H---VDIFVLTLE 322 (498)
T ss_pred -----ccccch----------------hhhccccccCCCcccHHHHHHHHhhhhceeEEEecC----C---cceeeEecc
Confidence 111111 123456777889999999999998888877777752 2 367888888
Q ss_pred hH
Q 017163 201 DI 202 (376)
Q Consensus 201 di 202 (376)
++
T Consensus 323 ~~ 324 (498)
T KOG2118|consen 323 DL 324 (498)
T ss_pred ch
Confidence 87
No 216
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=32.88 E-value=45 Score=26.07 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=13.5
Q ss_pred CEEEEECCCCcEEEEEeH
Q 017163 266 SSIPIVDDNDSLLDIYSR 283 (376)
Q Consensus 266 ~~lpVvd~~g~lvGiis~ 283 (376)
-..||.|.+|+++|+++.
T Consensus 92 ~~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEeeECCCCcEEEEEEE
Confidence 368999999999999874
No 217
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=26.87 E-value=87 Score=31.61 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=32.2
Q ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163 333 DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371 (376)
Q Consensus 333 ~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~ 371 (376)
..+..+.+.....+-.-|+|+.+ +++.|+|-+.|+++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcc
Confidence 45778888899999999999985 99999999999975
No 218
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=24.17 E-value=82 Score=26.98 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=15.8
Q ss_pred CEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163 266 SSIPIVDDNDSLLDIYSRSDITALAKD 292 (376)
Q Consensus 266 ~~lpVvd~~g~lvGiis~~Di~~~~~~ 292 (376)
..+=|+|++|..+|+++..+.+.++..
T Consensus 20 ~~Vrli~~dG~~lgv~~~~eAl~~A~~ 46 (177)
T PRK00028 20 REVRLIGDDGEQLGIVSTREALELAEE 46 (177)
T ss_pred CEEEEECCCCcCCCceeHHHHHHHHHH
Confidence 345556666666666666666665543
No 219
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=24.07 E-value=1.3e+02 Score=25.56 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=27.4
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHhccccc
Q 017163 264 DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA 296 (376)
Q Consensus 264 ~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~ 296 (376)
+...+-++|++|.-+|+++..+.+.++.+....
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e~~LD 49 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEEAGLD 49 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHHcCCC
Confidence 456677899999999999999999988765543
No 220
>PF14044 NETI: NETI protein
Probab=23.92 E-value=1.5e+02 Score=20.20 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=21.7
Q ss_pred EeCCCCCHHHHHHHHHhCCCcee-----EEEec
Q 017163 156 QAGPYDSLKEVALKILQNKVATV-----PIIHS 183 (376)
Q Consensus 156 ~v~~~~sl~~a~~~m~~~~v~~l-----pVvd~ 183 (376)
.|.++.|+.+++..|.+.|+.-+ ||...
T Consensus 3 eV~enETI~~CL~RM~~eGY~PvrR~EkPiF~e 35 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGYMPVRRIEKPIFKE 35 (57)
T ss_pred eccCCCcHHHHHHHHHHcCCCceeeccccceEE
Confidence 46789999999999999886333 66644
No 221
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=23.02 E-value=81 Score=26.69 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=17.7
Q ss_pred CEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 017163 266 SSIPIVDDNDSLLDIYSRSDITALAKDK 293 (376)
Q Consensus 266 ~~lpVvd~~g~lvGiis~~Di~~~~~~~ 293 (376)
..+=++|++|..+|+++..+.+.++.+.
T Consensus 8 ~~Vrli~~dG~~lgv~~~~eAl~~A~~~ 35 (165)
T TIGR00168 8 NEVRLIDENGEQLGIVSREEALEIAEEA 35 (165)
T ss_pred CEEEEECCCCcCCCcccHHHHHHHHHHc
Confidence 3455666667777777777766665543
No 222
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=22.96 E-value=83 Score=22.47 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=14.0
Q ss_pred EEEEECCCCcEEEEEeH
Q 017163 267 SIPIVDDNDSLLDIYSR 283 (376)
Q Consensus 267 ~lpVvd~~g~lvGiis~ 283 (376)
+.||.+++|+++|++..
T Consensus 18 s~pi~~~~g~~~Gvv~~ 34 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVGI 34 (81)
T ss_dssp EEEEEETTTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEE
Confidence 57899889999998753
No 223
>PF09308 LuxQ-periplasm: LuxQ, periplasmic; InterPro: IPR015387 This entry represents the periplasmic sensor domain of the prokaryotic protein LuxQ, that assumes a structure consisting of two tandem Per/ARNT/Simple-minded (PAS) folds []. ; GO: 0004673 protein histidine kinase activity, 0016791 phosphatase activity; PDB: 2HJ9_C 2HJE_A 1ZHH_B 3C30_A 3C38_A.
Probab=21.86 E-value=74 Score=28.61 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.6
Q ss_pred CcEEEEEeCCCCeEEEEE
Q 017163 347 VRRLVIVEAGSKRVEGII 364 (376)
Q Consensus 347 ~~~l~VVd~~~~~~~GvI 364 (376)
++|.||+|..+|+++|.+
T Consensus 129 vRR~pIi~~~tGEVlG~L 146 (238)
T PF09308_consen 129 VRRTPIIDPKTGEVLGYL 146 (238)
T ss_dssp EEEEEEE-TTTSBEEEEE
T ss_pred EeecceeeCCCCeEEEEE
Confidence 479999999899999865
No 224
>CHL00199 infC translation initiation factor 3; Provisional
Probab=20.93 E-value=1.1e+02 Score=26.41 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=19.9
Q ss_pred CEEEEECCCCcEEEEEeHHHHHHHHhccc
Q 017163 266 SSIPIVDDNDSLLDIYSRSDITALAKDKA 294 (376)
Q Consensus 266 ~~lpVvd~~g~lvGiis~~Di~~~~~~~~ 294 (376)
..+=++|++|+.+|+++..+.+.++.+..
T Consensus 25 ~~VrlI~~~G~~lGv~~~~eAl~~A~~~~ 53 (182)
T CHL00199 25 PKVRVIDDSGEQLGIFTSEQAIQLAANQG 53 (182)
T ss_pred CEEEEECCCCcCCCceeHHHHHHHHHHcC
Confidence 45667777777777777777777665433
Done!