BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017164
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 116/300 (38%), Gaps = 31/300 (10%)
Query: 76 PLDVAKMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASL 135
PLD AK+ ++ G +Y+G L +VR EG L+ G A L
Sbjct: 21 PLDTAKVRLQIQGESQ------GLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGL 74
Query: 136 ALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELART 195
+ + + YD ++ F T + L+AGS +LA P ++ +
Sbjct: 75 QRQMSFASVRIGLYDS----VKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKV 130
Query: 196 RMQAFTETQSGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAI 255
R QA G + + +++ + + + R LW G +AR+ +
Sbjct: 131 RFQAQARAGGGRRYQ----------STVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180
Query: 256 CWSTLEPIRRSIL--SLVGDDARVTSILGANFTGGFVAGSIAAAATCPLDVSRTRHQIEK 313
T + I+ ++L +L+ DD L +FT F AG P+DV +TR+
Sbjct: 181 ELVTYDLIKDTLLKANLMTDD------LPCHFTSAFGAGFCTTVIASPVDVVKTRYM--- 231
Query: 314 DPTRALNMTTRQTLMEIWRDGGMKGLFTGVGPRVARAGPSVGIVVSFYEVVKYALYQRHQ 373
+ + + + R G + + G P R G ++ YE +K AL +Q
Sbjct: 232 NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 33/208 (15%)
Query: 171 VPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPP------GVWKTLVGVVNPLK 224
V + A +A + +P++ A+ R+Q E+Q V+ GV T++ +V
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMV---- 58
Query: 225 SRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRRSILSLVGDDARVTSILGAN 284
+ + R L+ G+ A L R + F+++ + +++ G + + +G+
Sbjct: 59 ------RTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQ--FYTKGSE---HAGIGSR 107
Query: 285 FTGGFVAGSIAAAATCPLDVSRTRHQIEKDPTRALNMTTRQTLME----IWRDGGMKGLF 340
G G++A A P DV + R Q + RA Q+ +E I R+ G++GL+
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQ---ARAGGGRRYQSTVEAYKTIAREEGIRGLW 164
Query: 341 TGVGPRVARAGPSVGIVVSFYEVVKYAL 368
G P VAR +V+ E+V Y L
Sbjct: 165 KGTSPNVAR-----NAIVNCAELVTYDL 187
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 101/266 (37%), Gaps = 22/266 (8%)
Query: 106 NRYKGTLDLFYKVVRQEGFARLWRGTYASLALSVPTVGIYLPCYDGFRNLMENFTTGNAP 165
+YKG +D ++ +++GF WRG A++ PT + D ++ + +
Sbjct: 48 KQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107
Query: 166 MLTPYV-PLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPLK 224
+ L +G A + + YP++ ARTR+ A V + G+ N +
Sbjct: 108 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA------DVGKGAAQREFTGLGNCIT 161
Query: 225 SRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRRSILSLVGDDARVTSILGAN 284
S L R L+ G + + + A + + + ++ D V I+
Sbjct: 162 KIFKSDGL---RGLYQGFNVSVQGIIIYRAAYFGVYDTAK----GMLPDPKNVHIIVSWM 214
Query: 285 FTGGFVAGSIAAAATCPLDVSRTRHQIEKDPTRALNMTTRQTLMEIWR----DGGMKGLF 340
A +A + P D R R ++ A M T ++ WR D G K F
Sbjct: 215 IAQTVTA--VAGLVSYPFDTVRRRMMMQSGRKGADIMYT--GTVDCWRKIAKDEGPKAFF 270
Query: 341 TGVGPRVARAGPSVGIVVSFYEVVKY 366
G V R ++V + E+ K+
Sbjct: 271 KGAWSNVLRGMGGAFVLVLYDEIKKF 296
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 149 YDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIEL 192
+D + + T N P LTPY+ + SV L CI+ IEL
Sbjct: 779 FDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIEL 822
>pdb|3Q08|A Chain A, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|B Chain B, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|C Chain C, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|D Chain D, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|E Chain E, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|F Chain F, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|G Chain G, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|H Chain H, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|I Chain I, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|J Chain J, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|K Chain K, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|L Chain L, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|M Chain M, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|N Chain N, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|O Chain O, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|P Chain P, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|Q Chain Q, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|R Chain R, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|S Chain S, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q08|T Chain T, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 6.5
pdb|3Q09|A Chain A, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|B Chain B, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|C Chain C, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|D Chain D, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|E Chain E, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|F Chain F, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|G Chain G, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|H Chain H, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|I Chain I, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|J Chain J, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|K Chain K, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|L Chain L, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|M Chain M, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|N Chain N, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|O Chain O, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|P Chain P, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|Q Chain Q, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|R Chain R, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|S Chain S, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
pdb|3Q09|T Chain T, Crystal Structure Of Chlorite Dismutase From D. Aromatica
At Ph 9.0
Length = 248
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 185 ISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPL 223
I+ Y + A+T M+ F T G K V++TLVGV PL
Sbjct: 79 INAYDLAKAQTFMREFRSTTVG-KNADVFETLVGVTKPL 116
>pdb|2VXH|A Chain A, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|B Chain B, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|C Chain C, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|D Chain D, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|E Chain E, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
pdb|2VXH|F Chain F, The Crystal Structure Of Chlorite Dismutase: A Detox
Enzyme Producing Molecular Oxygen
Length = 251
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 185 ISCYPIELARTRMQAFTETQSGVKPPGVWKTLVGVVNPL 223
I+ Y + A+T M+ F T G K V++TLVGV PL
Sbjct: 82 INAYDLAKAQTFMREFRSTTIG-KNADVFETLVGVTKPL 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,898,113
Number of Sequences: 62578
Number of extensions: 371400
Number of successful extensions: 702
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 9
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)