Query 017164
Match_columns 376
No_of_seqs 190 out of 2223
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1E-55 3.5E-60 410.6 16.6 286 59-371 4-289 (303)
2 1okc_A ADP, ATP carrier protei 100.0 3E-55 1E-59 406.4 18.7 289 54-368 5-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 4.7E-35 1.6E-39 270.8 13.0 193 169-371 7-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 7.5E-35 2.6E-39 270.1 14.0 189 53-270 101-289 (303)
5 4b19_A PEPA1; toxin, toxin apo 29.1 20 0.00067 19.8 0.9 22 283-304 5-26 (30)
6 1y9i_A Low temperature require 17.8 1.2E+02 0.0041 24.5 3.9 46 251-296 111-157 (178)
7 3tgu_G UQCRQ, mitochondrial ub 13.7 2.5E+02 0.0086 19.4 4.2 40 234-273 33-72 (81)
8 2acm_A Mucin-1; auto-catalytic 13.7 41 0.0014 21.8 0.1 20 109-128 40-59 (66)
9 2bnk_A Early protein GP16.7; D 12.0 1.6E+02 0.0054 18.9 2.4 45 298-343 21-65 (67)
10 3cx5_H Cytochrome B-C1 complex 10.6 74 0.0025 22.8 0.6 38 334-371 42-79 (93)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1e-55 Score=410.56 Aligned_cols=286 Identities=23% Similarity=0.318 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhcCCCCCCcCCCCCCCCCccccccccHHHHHHHHHHhhccccccccchhhhhhh
Q 017164 59 RAFSAAGAAIVSAVIVNPLDVAKMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYASLALS 138 (376)
Q Consensus 59 ~~~ag~~ag~~~~~~~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~ 138 (376)
.+++|++||+++.++++|+|+||+|+|++....... .......|+++++++++|+++||++|||||+.+++++.
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~ 77 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLV------RTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQ 77 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH------HHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhcccccc------ccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHH
Confidence 589999999999999999999999999864311000 00112468999999999999999999999999999999
Q ss_pred hhchhhhHhHHHHHHHHhhhhcCCCCCCCCchhhhhhhhHHHHHHHHhhchHHHHHHHHHhcccccCCCCCCchhhhHhh
Q 017164 139 VPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGVWKTLVG 218 (376)
Q Consensus 139 ~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~Pld~ik~rlq~~~~~~~~~~~~~~~~~~~~ 218 (376)
++..+++|++||.+|+.+.+... ..+....+++|++||+++.++++|+|++|+|+|++.......+|++.++++++
T Consensus 78 ~~~~~i~f~~ye~~k~~~~~~~~----~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~ 153 (303)
T 2lck_A 78 MSFASVRIGLYDSVKQFYTKGSE----HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKT 153 (303)
T ss_dssp HHHHHHTTTHHHHHHHHHSCCCS----SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc----CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHH
Confidence 99999999999999998865421 23467789999999999999999999999999998654334478999999999
Q ss_pred hhcccccccccccccchhhhccchhhhhhhhhhhhhhHHHhHHHHHHHHHhhhCCCcccccchhhhhhhhhHHHHhHhhh
Q 017164 219 VVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRRSILSLVGDDARVTSILGANFTGGFVAGSIAAAA 298 (376)
Q Consensus 219 i~~~~~~~~~~~~~~G~~glyrG~~~~llr~~~~~~i~f~~~e~lk~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~ 298 (376)
+++++ |++|||||+.|.+++.+|+.+++|.+||.+|+.+.+.... .......+++|+++|++++++
T Consensus 154 i~~~e----------G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~----~~~~~~~~~~g~~ag~~~~~~ 219 (303)
T 2lck_A 154 IAREE----------GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM----TDDLPCHFTSAFGAGFCTTVI 219 (303)
T ss_dssp HHHHH----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSC----CSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc----------ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----CCchHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999987653221 122334899999999999999
Q ss_pred cchhhHHHHhhhcccCCCccCCCCHHHHHHHHHHhcCccccccChhHHhhhhcccceeeHhhHHHHHHHHhhh
Q 017164 299 TCPLDVSRTRHQIEKDPTRALNMTTRQTLMEIWRDGGMKGLFTGVGPRVARAGPSVGIVVSFYEVVKYALYQR 371 (376)
Q Consensus 299 t~Pldvvk~r~q~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~i~~~~~e~~~~~~~~~ 371 (376)
++|+|+||+|||.+.. ..|.++++|+++++++||+++||||+.++++|.+|.+++.|.+||.+++.+.+.
T Consensus 220 ~~P~dvvktrlq~~~~---~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 220 ASPVDVVKTRYMNSAL---GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp HHHHHHHHHHHTTCCS---SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred cCHHHHHHHHHHhccc---cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999864 248899999999999999999999999999999999999999999999887544
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3e-55 Score=406.37 Aligned_cols=289 Identities=19% Similarity=0.304 Sum_probs=240.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhcchHHHHHHHhhcCCCCCCcCCCCCCCCCccccccccHHHHHHHHHHhhccccccccchh
Q 017164 54 LGFAERAFSAAGAAIVSAVIVNPLDVAKMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTYA 133 (376)
Q Consensus 54 ~~~~~~~~ag~~ag~~~~~~~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~ 133 (376)
++....+++|++||+++.++++|+|+||+|+|++.... +......|+++++++++|+++||++|||||+.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~---------~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~ 75 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASK---------QISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLA 75 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCS---------SCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccc---------ccccccccccHHHHHHHHHhccchhheecccHH
Confidence 34678899999999999999999999999999873211 012234789999999999999999999999999
Q ss_pred hhhhhhhchhhhHhHHHHHHHHhhhhcCCCCC-CCCchhhhhhhhHHHHHHHHhhchHHHHHHHHHhccccc-CCCCCCc
Q 017164 134 SLALSVPTVGIYLPCYDGFRNLMENFTTGNAP-MLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQ-SGVKPPG 211 (376)
Q Consensus 134 ~~~~~~~~~~~~f~~y~~~k~~~~~~~~~~~~-~~~~~~~~~ag~~ag~~~~~v~~Pld~ik~rlq~~~~~~-~~~~~~~ 211 (376)
++++.++..+++|++||.+|+.+......... .......+++|++||++++++++|+|++|+|+|++.... ...+|++
T Consensus 76 ~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~ 155 (297)
T 1okc_A 76 NVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTG 155 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCC
Confidence 99999999999999999999954332211110 012356789999999999999999999999999985422 1346899
Q ss_pred hhhhHhhhhcccccccccccccchhhhccchhhhhhhhhhhhhhHHHhHHHHHHHHHhhhCCCcccccchhhhhhhhhHH
Q 017164 212 VWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRRSILSLVGDDARVTSILGANFTGGFVA 291 (376)
Q Consensus 212 ~~~~~~~i~~~~~~~~~~~~~~G~~glyrG~~~~llr~~~~~~i~f~~~e~lk~~~~~~~~~~~~~~~~~~~~~~~g~~a 291 (376)
.+++++++++++ |++|||||+.|.+++.+|+.+++|.+||.+|+.+.+.. .......+++|.++
T Consensus 156 ~~~~~~~i~~~e----------G~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~------~~~~~~~~~~g~~a 219 (297)
T 1okc_A 156 LGNCITKIFKSD----------GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK------NVHIIVSWMIAQTV 219 (297)
T ss_dssp HHHHHHHHHHHH----------CHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----------cHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC------CccHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999654321 12233478999999
Q ss_pred HHhHhhhcchhhHHHHhhhcccCC--CccCCCCHHHHHHHHHHhcCccccccChhHHhhhhcccceeeHhhHHHHHHHH
Q 017164 292 GSIAAAATCPLDVSRTRHQIEKDP--TRALNMTTRQTLMEIWRDGGMKGLFTGVGPRVARAGPSVGIVVSFYEVVKYAL 368 (376)
Q Consensus 292 g~~~~~~t~Pldvvk~r~q~~~~~--~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~i~~~~~e~~~~~~ 368 (376)
|++++++++|+||||+|||++... ..+.|.++++|+++|+++||+++||||+.++++|. +..++.|.+||.+++++
T Consensus 220 g~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 220 TAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 999999999999999999998542 23568999999999999999999999999999996 56889999999998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.7e-35 Score=270.79 Aligned_cols=193 Identities=19% Similarity=0.280 Sum_probs=166.1
Q ss_pred chhhhhhhhHHHHHHHHhhchHHHHHHHHHhccccc---CCCCCCchhhhHhhhhcccccccccccccchhhhccchhhh
Q 017164 169 PYVPLVAGSVARSLACISCYPIELARTRMQAFTETQ---SGVKPPGVWKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQ 245 (376)
Q Consensus 169 ~~~~~~ag~~ag~~~~~v~~Pld~ik~rlq~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~glyrG~~~~ 245 (376)
....+++|++||+++.++++|+|++|+|+|++.... ...+|++.+++++++++++ |++|||||+.+.
T Consensus 7 ~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~e----------G~~glyrG~~~~ 76 (297)
T 1okc_A 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ----------GFLSFWRGNLAN 76 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHH----------CGGGGGTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhcc----------chhheecccHHH
Confidence 456799999999999999999999999999986421 1236899999999999999 999999999999
Q ss_pred hhhhhhhhhhHHHhHHHHHHHHHhhhCCCcccccchhhhhhhhhHHHHhHhhhcchhhHHHHhhhcccCC--CccCCCCH
Q 017164 246 LARDVPFSAICWSTLEPIRRSILSLVGDDARVTSILGANFTGGFVAGSIAAAATCPLDVSRTRHQIEKDP--TRALNMTT 323 (376)
Q Consensus 246 llr~~~~~~i~f~~~e~lk~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pldvvk~r~q~~~~~--~~~~y~~~ 323 (376)
+++.+|..+++|.+||.+|+.+.+..+.+......+...+++|.++|++++++++|+|+||+|||++... ....|.++
T Consensus 77 l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~ 156 (297)
T 1okc_A 77 VIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGL 156 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCH
Confidence 9999999999999999999965443222222222334588999999999999999999999999998542 23568999
Q ss_pred HHHHHHHHHhcCccccccChhHHhhhhcccceeeHhhHHHHHHHHhhh
Q 017164 324 RQTLMEIWRDGGMKGLFTGVGPRVARAGPSVGIVVSFYEVVKYALYQR 371 (376)
Q Consensus 324 ~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~i~~~~~e~~~~~~~~~ 371 (376)
++|+++++++||+++||||+.++++|.+|..++.|.+||.+++.+.+.
T Consensus 157 ~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 157 GNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999987543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=7.5e-35 Score=270.11 Aligned_cols=189 Identities=16% Similarity=0.249 Sum_probs=168.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHhhcCCCCCCcCCCCCCCCCccccccccHHHHHHHHHHhhccccccccch
Q 017164 53 SLGFAERAFSAAGAAIVSAVIVNPLDVAKMLSDMRNSPSCTCAVPGTEPAPECNRYKGTLDLFYKVVRQEGFARLWRGTY 132 (376)
Q Consensus 53 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vk~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~ 132 (376)
..+....+++|++||+++.++++|+|+||+|+|++... .....|+++++++++|+++||++|||||+.
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~------------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~ 168 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA------------GGGRRYQSTVEAYKTIAREEGIRGLWKGTS 168 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC------------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc------------CCCCCCCCHHHHHHHHHHhcChhhhhCCcc
Confidence 46778899999999999999999999999999986321 123468999999999999999999999999
Q ss_pred hhhhhhhhchhhhHhHHHHHHHHhhhhcCCCCCCCCchhhhhhhhHHHHHHHHhhchHHHHHHHHHhcccccCCCCCCch
Q 017164 133 ASLALSVPTVGIYLPCYDGFRNLMENFTTGNAPMLTPYVPLVAGSVARSLACISCYPIELARTRMQAFTETQSGVKPPGV 212 (376)
Q Consensus 133 ~~~~~~~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~Pld~ik~rlq~~~~~~~~~~~~~~ 212 (376)
+.+++.+|..+++|.+||.+|+.+.+.... ..+....+++|++||++++++++|+|+||+|||++.. ..|++.
T Consensus 169 ~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~---~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----~~y~~~ 241 (303)
T 2lck_A 169 PNVARNAIVNCAELVTYDLIKDTLLKANLM---TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----GQYHSA 241 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTTSC---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----SSCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----cccCCH
Confidence 999999999999999999999988754322 2345678999999999999999999999999999753 268999
Q ss_pred hhhHhhhhcccccccccccccchhhhccchhhhhhhhhhhhhhHHHhHHHHHHHHHhh
Q 017164 213 WKTLVGVVNPLKSRNSSQKLQNYRILWTGVGAQLARDVPFSAICWSTLEPIRRSILSL 270 (376)
Q Consensus 213 ~~~~~~i~~~~~~~~~~~~~~G~~glyrG~~~~llr~~~~~~i~f~~~e~lk~~~~~~ 270 (376)
+++++++++++ |++|||||+.|+++|.+|..+++|.+||.+|+.+.+.
T Consensus 242 ~~~~~~i~~~e----------G~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 242 GHCALTMLRKE----------GPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp HHHHHHHHHSS----------CTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHc----------ChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999999999999999999999999999876543
No 5
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=29.11 E-value=20 Score=19.77 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=18.8
Q ss_pred hhhhhhhHHHHhHhhhcchhhH
Q 017164 283 ANFTGGFVAGSIAAAATCPLDV 304 (376)
Q Consensus 283 ~~~~~g~~ag~~~~~~t~Pldv 304 (376)
.++++..++|++.++++|-|+.
T Consensus 5 v~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 5 VHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp TSSTTTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 3778889999999999998874
No 6
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=17.84 E-value=1.2e+02 Score=24.51 Aligned_cols=46 Identities=11% Similarity=0.265 Sum_probs=29.2
Q ss_pred hhhhhHHHhHHHHHHHHHhhhCC-CcccccchhhhhhhhhHHHHhHh
Q 017164 251 PFSAICWSTLEPIRRSILSLVGD-DARVTSILGANFTGGFVAGSIAA 296 (376)
Q Consensus 251 ~~~~i~f~~~e~lk~~~~~~~~~-~~~~~~~~~~~~~~g~~ag~~~~ 296 (376)
....+.|..||..|.......++ .......+...+++|+.|+++..
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 34566677888888766555432 23344566667888887776553
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=13.74 E-value=2.5e+02 Score=19.40 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=33.3
Q ss_pred chhhhccchhhhhhhhhhhhhhHHHhHHHHHHHHHhhhCC
Q 017164 234 NYRILWTGVGAQLARDVPFSAICWSTLEPIRRSILSLVGD 273 (376)
Q Consensus 234 G~~glyrG~~~~llr~~~~~~i~f~~~e~lk~~~~~~~~~ 273 (376)
|+.-.+|-+..+++..+|...+.+.+|+..++.......+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7777788888899999999999999999999887665443
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=13.68 E-value=41 Score=21.77 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHhhcccccc
Q 017164 109 KGTLDLFYKVVRQEGFARLW 128 (376)
Q Consensus 109 ~~~~~~~~~i~~~~G~~gly 128 (376)
+++.+.+..||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56788899999999999886
No 9
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=12.00 E-value=1.6e+02 Score=18.87 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=29.0
Q ss_pred hcchhhHHHHhhhcccCCCccCCCCHHHHHHHHHHhcCccccccCh
Q 017164 298 ATCPLDVSRTRHQIEKDPTRALNMTTRQTLMEIWRDGGMKGLFTGV 343 (376)
Q Consensus 298 ~t~Pldvvk~r~q~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~ 343 (376)
+--|+|.|---. .+....+..-..+.+.-+.-|+-|.-+-+|||.
T Consensus 21 IrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 21 IRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp CCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred CcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 345888876544 222222222245667778889999999999995
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=10.56 E-value=74 Score=22.77 Aligned_cols=38 Identities=8% Similarity=-0.096 Sum_probs=32.4
Q ss_pred cCccccccChhHHhhhhcccceeeHhhHHHHHHHHhhh
Q 017164 334 GGMKGLFTGVGPRVARAGPSVGIVVSFYEVVKYALYQR 371 (376)
Q Consensus 334 eG~~~lyrG~~~~~~~~~~~~~i~~~~~e~~~~~~~~~ 371 (376)
+|+...+|-+.-.++..+|...+.+.+|++.++..+..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 47888888888888899999999999999998877543
Done!