Your job contains 1 sequence.
>017166
MPMGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHAR
VWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSS
AFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLN
DFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCFDIDFCRSKLSSFN
YQSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGID
REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYKSAASA
AGAYLADSQYGVVPSF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017166
(376 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172545 - symbol:COL5 "CONSTANS-like 5" specie... 850 6.2e-85 1
TAIR|locus:2074587 - symbol:COL2 "CONSTANS-like 2" specie... 355 3.8e-58 2
TAIR|locus:2047246 - symbol:COL3 "CONSTANS-like 3" specie... 388 4.2e-57 2
TAIR|locus:2143221 - symbol:COL1 "CONSTANS-like 1" specie... 587 4.6e-57 1
UNIPROTKB|Q9FE92 - symbol:Hd1 "Heading day 1" species:453... 321 5.4e-53 2
TAIR|locus:2143206 - symbol:CO "CONSTANS" species:3702 "A... 534 1.9e-51 1
UNIPROTKB|Q9FDX8 - symbol:HD1 "Zinc finger protein HD1" s... 284 4.2e-49 2
UNIPROTKB|Q9FRZ7 - symbol:Hd1 "Hd1 protein" species:39946... 341 5.4e-31 1
UNIPROTKB|Q9FRZ6 - symbol:Q9FRZ6 "Hd1" species:4530 "Oryz... 321 7.1e-29 1
TAIR|locus:2010504 - symbol:BBX13 "B-box domain protein 1... 188 1.0e-23 2
TAIR|locus:2043288 - symbol:AT2G47890 species:3702 "Arabi... 181 5.2e-23 2
TAIR|locus:2051104 - symbol:BBX12 "B-box domain protein 1... 188 6.0e-23 2
TAIR|locus:2164718 - symbol:BBX8 "B-box domain protein 8"... 175 7.0e-21 2
TAIR|locus:2091082 - symbol:COL9 "CONSTANS-like 9" specie... 162 9.6e-21 2
TAIR|locus:2129860 - symbol:BBX9 "B-box domain protein 9"... 159 2.2e-18 3
TAIR|locus:2088748 - symbol:BBX10 "B-box domain protein 1... 154 2.3e-18 2
TAIR|locus:2031180 - symbol:BBX15 "B-box domain protein 1... 151 4.0e-17 2
TAIR|locus:2201277 - symbol:BBX14 "B-box domain protein 1... 148 1.3e-16 2
TAIR|locus:2031581 - symbol:BBX16 "B-box domain protein 1... 155 2.3e-16 2
TAIR|locus:2028421 - symbol:BBX17 "B-box domain protein 1... 158 4.4e-16 2
TAIR|locus:2050130 - symbol:BBX18 "B-box domain protein 1... 187 2.8e-14 1
TAIR|locus:2198841 - symbol:STO "SALT TOLERANCE" species:... 165 2.0e-10 1
TAIR|locus:2207155 - symbol:AT1G05290 species:3702 "Arabi... 136 3.5e-10 2
TAIR|locus:2005624 - symbol:BBX21 "B-box domain protein 2... 165 8.8e-10 1
TAIR|locus:2061330 - symbol:STH "salt tolerance homologue... 155 2.9e-09 1
TAIR|locus:2062749 - symbol:AT2G46670 "AT2G46670" species... 137 1.0e-08 1
TAIR|locus:2007482 - symbol:AT1G07050 "AT1G07050" species... 140 2.4e-08 1
TAIR|locus:2145698 - symbol:AT5G14370 species:3702 "Arabi... 150 5.1e-08 1
TAIR|locus:2199262 - symbol:BBX27 "B-box domain protein 2... 150 5.7e-08 1
TAIR|locus:2122759 - symbol:bbx23 "B-box domain protein 2... 130 6.0e-08 1
TAIR|locus:2195518 - symbol:AT1G63820 species:3702 "Arabi... 134 1.0e-07 2
TAIR|locus:2120207 - symbol:BZS1 "BZS1" species:3702 "Ara... 142 1.4e-07 1
TAIR|locus:1009023318 - symbol:BBX30 "B-box domain protei... 122 4.5e-07 1
TAIR|locus:2175564 - symbol:CIA2 "chloroplast import appa... 138 2.0e-06 1
TAIR|locus:2195643 - symbol:BBX26 "B-box domain protein 2... 133 2.0e-06 1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 140 2.6e-06 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 137 2.9e-06 1
TAIR|locus:2018344 - symbol:AT1G04500 "AT1G04500" species... 134 4.4e-06 1
TAIR|locus:2168083 - symbol:AT5G59990 "AT5G59990" species... 126 1.2e-05 1
TAIR|locus:2177911 - symbol:AT5G41380 "AT5G41380" species... 128 1.3e-05 1
TAIR|locus:2051099 - symbol:AT2G33350 "AT2G33350" species... 128 2.3e-05 1
TAIR|locus:2132902 - symbol:AT4G27900 "AT4G27900" species... 123 3.3e-05 1
TAIR|locus:2095562 - symbol:BBX31 "B-box domain protein 3... 104 4.2e-05 1
TAIR|locus:2178441 - symbol:AT5G53420 "AT5G53420" species... 119 9.7e-05 1
TAIR|locus:2090374 - symbol:ASML2 "activator of spomin::L... 118 0.00011 1
TAIR|locus:2120850 - symbol:CIL "AT4G25990" species:3702 ... 120 0.00018 1
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 120 0.00034 1
>TAIR|locus:2172545 [details] [associations]
symbol:COL5 "CONSTANS-like 5" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB018118 HOGENOM:HOG000238833 EMBL:AY057632
EMBL:AY080747 EMBL:AY114006 EMBL:AY088432 IPI:IPI00531436
RefSeq:NP_568863.1 UniGene:At.20797 IntAct:Q9FHH8 STRING:Q9FHH8
PRIDE:Q9FHH8 EnsemblPlants:AT5G57660.1 GeneID:835872
KEGG:ath:AT5G57660 TAIR:At5g57660 eggNOG:NOG321782
InParanoid:Q9FHH8 OMA:YSSYTAT PhylomeDB:Q9FHH8
ProtClustDB:CLSN2917767 Genevestigator:Q9FHH8 GermOnline:AT5G57660
Uniprot:Q9FHH8
Length = 355
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 194/363 (53%), Positives = 230/363 (63%)
Query: 3 MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVW 62
MG L S+K ISGGW AA+ CD CK+ AAVFCRVDSAFLC+ CD RIH+ +H RVW
Sbjct: 1 MGFGLESIKSISGGWGAAARSCDACKSVTAAVFCRVDSAFLCIACDTRIHS-FTRHERVW 59
Query: 63 MCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK---- 118
+CEVCEQAPAAVTCKADAAALCV+CD DIHSANPLA RHER+P+E FFDSA++ V
Sbjct: 60 VCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISA 119
Query: 119 SSAFNFLVPSDQNGGSEFTGASEH-DGVDSASWLIPN--SKPG-IENAGE-MKSGDMFFI 173
SS F L S + T D + WL+PN ++P IE E MK F
Sbjct: 120 SSTFGILGSSTT---VDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMF 176
Query: 174 DPFIDLNDFDYPNSFQNHH--SAGMDSVVPVQT-TKPEXXXXXXXXXXXLINNENCFDID 230
F L DF++PNSF NHH +AG DS+VPVQT T+P L NN++CFDID
Sbjct: 177 SDFDRLIDFEFPNSF-NHHQNNAGGDSLVPVQTKTEP----------LPLTNNDHCFDID 225
Query: 231 FCRSKLXXXX----XXXXXXXXXXLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVS 286
FCRSKL ++ GVVPDGN+ + + N ST +T S
Sbjct: 226 FCRSKLSAFTYPSQSVSHSVSTSSIEYGVVPDGNTNNSV------NRST-------ITSS 272
Query: 287 APGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA 346
G + Q +DREARVLRYREKRKNRKFEKTIRY SRKAYAE+RPRIKGRFAKR E
Sbjct: 273 TTGGDH--QASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTET 330
Query: 347 DSE 349
+++
Sbjct: 331 END 333
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 76/158 (48%), Positives = 91/158 (57%)
Query: 220 LINNENCFDIDFCRSKLXXXXXXXXXXXXXXLDVGVVPDGNSMSDISYTFGRNMSTGSGA 279
L NN++CFDIDFCRSKL V S S I Y + +T +
Sbjct: 215 LTNNDHCFDIDFCRSKLSAFTYPSQS----------VSHSVSTSSIEYGVVPDGNTNNSV 264
Query: 280 DPS-VTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKG 338
+ S +T S G + Q +DREARVLRYREKRKNRKFEKTIRY SRKAYAE+RPRIKG
Sbjct: 265 NRSTITSSTTGGDH--QASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKG 322
Query: 339 RFAKRAEADSEVDRLYKXXXXXXXXXXXXXQYGVVPSF 376
RFAKR E ++ D ++ QYGVVP+F
Sbjct: 323 RFAKRTETEN--DDIF---LSHVYASAAHAQYGVVPTF 355
>TAIR|locus:2074587 [details] [associations]
symbol:COL2 "CONSTANS-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009658
"chloroplast organization" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:AC021640
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677
EMBL:AC068900 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009658 GO:GO:0009909 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:L81120 EMBL:L81119 EMBL:AF370149
EMBL:AY059092 EMBL:AY088779 IPI:IPI00518847 RefSeq:NP_186887.1
UniGene:At.10373 IntAct:Q96502 STRING:Q96502
EnsemblPlants:AT3G02380.1 GeneID:821298 KEGG:ath:AT3G02380
TAIR:At3g02380 eggNOG:NOG281690 InParanoid:Q96502 OMA:RVCEACE
PhylomeDB:Q96502 Genevestigator:Q96502 GermOnline:AT3G02380
Uniprot:Q96502
Length = 347
Score = 355 (130.0 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 94/262 (35%), Positives = 134/262 (51%)
Query: 14 SGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQA 70
SG W A+ CDTC++AA V+C DSA+LC CD R+H ++H RV +C+ CE A
Sbjct: 9 SGTW---ARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESA 65
Query: 71 PAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQ 130
PAA CKADAA+LC CD +IHSANPLARRH+R+PI P SA+S SS + PS+
Sbjct: 66 PAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPL--SANSC--SS----MAPSET 117
Query: 131 NGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLN---DFDYPNS 187
+ ++ D + ASWL+PN I N + ++D +D + D + ++
Sbjct: 118 DADND------EDDREVASWLLPNPGKNIGNQNNGFLFGVEYLD-LVDYSSSMDNQFEDN 170
Query: 188 FQNHH--SAGMDSVVPVQTTKPEXXXXXXXXXXXL-INNENCFDIDFCRSKLXXXXXXXX 244
H+ S G D VVP+Q + L IN + + L
Sbjct: 171 QYTHYQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHSAS 230
Query: 245 XXXXXXLDVGVVPDGNSMSDIS 266
+D+ VVP+ + SDI+
Sbjct: 231 VSS---MDISVVPESTA-SDIT 248
Score = 260 (96.6 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 60/126 (47%), Positives = 77/126 (61%)
Query: 251 LDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYRE 310
+D+ VVP+ + SDI+ R +T D +S P QL ++REARVLRYRE
Sbjct: 234 MDISVVPESTA-SDITVQHPR--TTKETIDQ---LSGPPTQVVQQLTPMEREARVLRYRE 287
Query: 311 KRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYKXXXXXXXXXXXXXQY 370
K+K RKF+KTIRY SRKAYAE RPRIKGRFAKR E ++E + ++ Y
Sbjct: 288 KKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFSTSLMSETG------Y 341
Query: 371 GVVPSF 376
G+VPSF
Sbjct: 342 GIVPSF 347
>TAIR|locus:2047246 [details] [associations]
symbol:COL3 "CONSTANS-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010099 "regulation of
photomorphogenesis" evidence=IMP] [GO:0010161 "red light signaling
pathway" evidence=IMP] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC006585 EMBL:AC007266 GO:GO:0010161
GO:GO:0010099 HOGENOM:HOG000238833 EMBL:AY058130 EMBL:AY140103
EMBL:BT002107 EMBL:AY085729 IPI:IPI00519735 PIR:E84640
RefSeq:NP_180052.1 UniGene:At.24362 ProteinModelPortal:Q9SK53
IntAct:Q9SK53 STRING:Q9SK53 EnsemblPlants:AT2G24790.1 GeneID:817016
KEGG:ath:AT2G24790 TAIR:At2g24790 eggNOG:NOG277018
InParanoid:Q9SK53 OMA:TDSREND PhylomeDB:Q9SK53
ProtClustDB:CLSN2912944 Genevestigator:Q9SK53 Uniprot:Q9SK53
Length = 294
Score = 388 (141.6 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 79/145 (54%), Positives = 102/145 (70%)
Query: 20 AAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTC 76
+++ CD+CK+ AA +FCR D+AFLC +CD +IH ++H RVW+CEVCEQAPA VTC
Sbjct: 4 SSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTC 63
Query: 77 KADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK-SSAFNFLVPSDQNGGSE 135
KADAAALCVTCD DIHSANPL+RRHER+PI PF+D+ SS+ NF+ D++GG
Sbjct: 64 KADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV---DEDGGDV 120
Query: 136 FTGASEHDGVDSASWLIPNSKPGIE 160
+ASWL+ +K GIE
Sbjct: 121 -----------TASWLL--AKEGIE 132
Score = 217 (81.4 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 44/54 (81%), Positives = 47/54 (87%)
Query: 293 ASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA 346
A QL +REARVLRYREKRKNRKFEKTIRY SRKAYAE RPRIKGRFAKR ++
Sbjct: 221 AVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDS 274
Score = 145 (56.1 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 60/219 (27%), Positives = 92/219 (42%)
Query: 63 MCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIV--KSS 120
+C+ C+ A + C+ADAA LC CD IH+AN LA RHER+ + + A + V K+
Sbjct: 7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66
Query: 121 AFNFLVPSDQNGGSEFTGASEHDGVDSASW---LIP-NSKPGIENAGEMKSGDM----FF 172
A V D++ S + H+ V + + P S N + GD+
Sbjct: 67 AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFVDEDGGDVTASWLL 126
Query: 173 IDPFIDL----NDFDYPNS--FQNHHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENC 226
I++ +D DYP +S+G D VVPVQ L NE+
Sbjct: 127 AKEGIEITNLFSDLDYPKIEVTSEENSSGNDGVVPVQNK--------------LFLNEDY 172
Query: 227 FDIDFCRSKLXXXXXXXX--XXXXXXLDVGVVPDGNSMS 263
F+ D SK+ +DV +VP+ ++
Sbjct: 173 FNFDLSASKISQQGFNFINQTVSTRTIDVPLVPESGGVT 211
>TAIR|locus:2143221 [details] [associations]
symbol:COL1 "CONSTANS-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0009909
EMBL:AL391144 EMBL:Y10555 EMBL:Y10556 EMBL:AY074369 EMBL:BT002363
IPI:IPI00520338 PIR:T51414 RefSeq:NP_197089.1 UniGene:At.24486
UniGene:At.48027 IntAct:O50055 STRING:O50055
EnsemblPlants:AT5G15850.1 GeneID:831442 KEGG:ath:AT5G15850
TAIR:At5g15850 eggNOG:NOG314154 HOGENOM:HOG000238833
InParanoid:O50055 OMA:QSCERAP PhylomeDB:O50055
ProtClustDB:CLSN2685199 Genevestigator:O50055 GermOnline:AT5G15850
Uniprot:O50055
Length = 355
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 149/376 (39%), Positives = 195/376 (51%)
Query: 13 ISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCM-NKHARVWMCEVCEQ 69
+ W A+ CDTC++AA V+CR DSA+LC +CD ++H N + ++H RV +C+ CE+
Sbjct: 4 VESNW---AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCER 60
Query: 70 APAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD-SADSIVKSSAFNFLVPS 128
APAA CKADAA+LC TCD++IHSANPLARRH+R+PI P + S S + + V
Sbjct: 61 APAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTD 120
Query: 129 DQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFF--IDPFIDLNDF-DYP 185
+N + D ++ASWL+PNS N GD F +D F D
Sbjct: 121 PENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIGDEFLNLVDYSSSDKQFTDQS 180
Query: 186 NSFQ---N--HHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFCRSKLXXXX 240
N +Q N S G D VVP+Q + IN C RS
Sbjct: 181 NQYQLDCNVPQRSYGEDGVVPLQIEVSKGMYQEQQNFQLSIN---CGSWGALRSS---NG 234
Query: 241 XXXXXXXXXXLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGID 300
+D+GVVP+ + SD + + R+ P P A L D
Sbjct: 235 SLSHMVNVSSMDLGVVPESTT-SDATVSNPRS--------PKAVTDQPPYPPAQMLSPRD 285
Query: 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYKXXXXX 360
REARVLRYREK+K RKFEKTIRY SRKAYAE RPRIKGRFAK+ + D E ++ +
Sbjct: 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMITF 345
Query: 361 XXXXXXXXQYGVVPSF 376
YG+VPSF
Sbjct: 346 DTG------YGIVPSF 355
>UNIPROTKB|Q9FE92 [details] [associations]
symbol:Hd1 "Heading day 1" species:4530 "Oryza sativa"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0009909 GO:GO:0010229 GO:GO:0048571 GO:GO:0048572
EMBL:JN402207 EMBL:AB041840 EMBL:AB041842 Gramene:Q9FE92
Genevestigator:Q9FE92 Uniprot:Q9FE92
Length = 407
Score = 321 (118.1 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 69/184 (37%), Positives = 106/184 (57%)
Query: 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCK 77
A+PCD C+AA + V+CR D+A+LC +CD R+H ++H RV +CE CE+APAA+ C+
Sbjct: 32 ARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACR 91
Query: 78 ADAAALCVTCDNDIHSANPLARRHERLPIEPF---FDSADSIVKSSAF---NFLVPSDQN 131
ADAAALCV CD ++SANPLARRH+R+P+ P A S++ + L D+
Sbjct: 92 ADAAALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATVLGDKDEE 151
Query: 132 GGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFF--IDPFIDLNDFD--YPNS 187
S + + D ++ + N N+ +G M+F +D + DL ++ Y N
Sbjct: 152 VDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNG-MYFGEVDEYFDLVGYNSYYDNR 210
Query: 188 FQNH 191
+N+
Sbjct: 211 IENN 214
Score = 245 (91.3 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 57/126 (45%), Positives = 76/126 (60%)
Query: 251 LDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYRE 310
++ G+VPD +++ D+ + + T +GA S P + +DREARVLRYRE
Sbjct: 294 MEAGIVPD-STVIDMPNS---RILTPAGAIN--LFSGPSLQMSLHFSSMDREARVLRYRE 347
Query: 311 KRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYKXXXXXXXXXXXXXQY 370
K+K RKFEKTIRY +RKAYAE RPRIKGRFAKR++ EVD+++ Y
Sbjct: 348 KKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQIEVDQMFSTAALSDGS------Y 401
Query: 371 GVVPSF 376
G VP F
Sbjct: 402 GTVPWF 407
>TAIR|locus:2143206 [details] [associations]
symbol:CO "CONSTANS" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IGI] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010018 "far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009908 GO:GO:0009909 EMBL:AL391144 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:X94937 EMBL:BT001926 EMBL:AY086574
IPI:IPI00535908 IPI:IPI00657421 PIR:A56133 RefSeq:NP_001031887.1
RefSeq:NP_197088.1 UniGene:At.18 IntAct:Q39057 MINT:MINT-6608985
STRING:Q39057 EnsemblPlants:AT5G15840.1 GeneID:831441
KEGG:ath:AT5G15840 TAIR:At5g15840 eggNOG:NOG306777
InParanoid:Q39057 KO:K12135 OMA:CHADSAY PhylomeDB:Q39057
Genevestigator:Q39057 GO:GO:0010018 Uniprot:Q39057
Length = 373
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 146/393 (37%), Positives = 198/393 (50%)
Query: 13 ISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQ 69
I G + A+PCDTC++ A V+C DSA+LC++CD ++H+ ++H RV +CE CE+
Sbjct: 9 IGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCER 68
Query: 70 APAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF----FDSADSIVKSSAFNFL 125
APAA C+AD A+LC CD+++HSANPLARRH+R+PI P F S + S
Sbjct: 69 APAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMT 128
Query: 126 VPS-----DQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLN 180
P DQ G E + D + ASWL PNS +N +G + F D +++L
Sbjct: 129 DPEKRLVVDQEEGEE----GDKDAKEVASWLFPNSD---KNNNNQNNG-LLFSDEYLNLV 180
Query: 181 DF----DYP--NSFQNHH--------SAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENC 226
D+ DY + H S G D VVP++ + N +N
Sbjct: 181 DYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLKLEESRGHQCH--------NQQNF 232
Query: 227 -FDIDFCRS--KLXXXXXXXXXXXXXXLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSV 283
F+I + S ++ GVVP+ S T + T G
Sbjct: 233 QFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPE----STACVTTASHPRTPKGTVEQQ 288
Query: 284 TVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKR 343
A +QL +DREARVLRYREKRK RKFEKTIRY SRKAYAE RPR+ GRFAKR
Sbjct: 289 PDPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348
Query: 344 AEADSEVDRLYKXXXXXXXXXXXXXQYGVVPSF 376
E ++E ++ + YG+VPSF
Sbjct: 349 -EIEAE-EQGFNTMLMYNTG------YGIVPSF 373
>UNIPROTKB|Q9FDX8 [details] [associations]
symbol:HD1 "Zinc finger protein HD1" species:39947 "Oryza
sativa Japonica Group" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0045892 GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 EMBL:AP008212 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0009908 GO:GO:0009909 GO:GO:0010229
eggNOG:NOG281690 OMA:RVCEACE GO:GO:0048579 GO:GO:0048576
EMBL:AB041837 EMBL:AB041838 EMBL:AB375859 EMBL:AP003044
EMBL:AP005813 RefSeq:NP_001057378.1 UniGene:Os.1189 STRING:Q9FDX8
EnsemblPlants:LOC_Os06g16370.1 GeneID:4340746 KEGG:osa:4340746
Gramene:Q9FDX8 ProtClustDB:CLSN2696123 GO:GO:0048571 GO:GO:0048572
Uniprot:Q9FDX8
Length = 395
Score = 284 (105.0 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 64/178 (35%), Positives = 100/178 (56%)
Query: 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCK 77
A+PCD C+AA + V+CR D+A+LC +CD R+H ++H RV +CE CE+APAA+ C+
Sbjct: 32 ARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACR 91
Query: 78 ADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFT 137
ADAAALCV CD +HSANPL +P A+++V ++ L D+ S
Sbjct: 92 ADAAALCVACDVQVHSANPLPAI--TIPATSVL--AEAVVATATV--LGDKDEEVDSWLL 145
Query: 138 GASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFF--IDPFIDLNDFD--YPNSFQNH 191
+ + D ++ + N N+ +G M+F +D + DL ++ Y N +N+
Sbjct: 146 LSKDSDNNNNNNNNNDNDNNDNNNSNSSNNG-MYFGEVDEYFDLVGYNSYYDNRIENN 202
Score = 245 (91.3 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 57/126 (45%), Positives = 76/126 (60%)
Query: 251 LDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYRE 310
++ G+VPD +++ D+ + + T +GA S P + +DREARVLRYRE
Sbjct: 282 MEAGIVPD-STVIDMPNS---RILTPAGAIN--LFSGPSLQMSLHFSSMDREARVLRYRE 335
Query: 311 KRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYKXXXXXXXXXXXXXQY 370
K+K RKFEKTIRY +RKAYAE RPRIKGRFAKR++ EVD+++ Y
Sbjct: 336 KKKARKFEKTIRYETRKAYAEARPRIKGRFAKRSDVQIEVDQMFSTAALSDGS------Y 389
Query: 371 GVVPSF 376
G VP F
Sbjct: 390 GTVPWF 395
>UNIPROTKB|Q9FRZ7 [details] [associations]
symbol:Hd1 "Hd1 protein" species:39946 "Oryza sativa Indica
Group" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 Pfam:PF00643
PROSITE:PS50119 SMART:SM00336 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0010229 GO:GO:0048571
GO:GO:0048572 EMBL:AB041839 EMBL:AB564434 Gramene:Q9FRZ7
Uniprot:Q9FRZ7
Length = 342
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 75/182 (41%), Positives = 109/182 (59%)
Query: 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCK 77
A+PCD C+AA + V+CR D+A+LC +CD R+H ++H RV +CE CEQAPAA+ C+
Sbjct: 32 ARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACEQAPAALACR 91
Query: 78 ADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFT 137
ADAAALCV CD +HSANPLARRH+R+P+ P A +I +S V + +
Sbjct: 92 ADAAALCVACDVQVHSANPLARRHQRVPVAPL--PAITIPATSVLAEAVVAT----ATVL 145
Query: 138 GASEHDGVDSASWLI----PNSKPGIENAGEMKSGDMFF--IDPFIDLNDFD--YPNSFQ 189
G + + VDS W+I N+ N+ +G M+F +D + DL ++ Y N +
Sbjct: 146 GGKDEE-VDS--WIILSKDSNNNNNNNNSNSSNNG-MYFGEVDEYFDLVGYNSYYDNRIE 201
Query: 190 NH 191
N+
Sbjct: 202 NN 203
>UNIPROTKB|Q9FRZ6 [details] [associations]
symbol:Q9FRZ6 "Hd1" species:4530 "Oryza sativa" [GO:0003677
"DNA binding" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=ISS] [GO:0010229 "inflorescence development" evidence=IGI]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] InterPro:IPR000315
PROSITE:PS50119 SMART:SM00336 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0010229 GO:GO:0048571
GO:GO:0048572 EMBL:AB041841 Gramene:Q9FRZ6 Genevestigator:Q9FRZ6
Uniprot:Q9FRZ6
Length = 259
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 69/184 (37%), Positives = 106/184 (57%)
Query: 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCK 77
A+PCD C+AA + V+CR D+A+LC +CD R+H ++H RV +CE CE+APAA+ C+
Sbjct: 32 ARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACR 91
Query: 78 ADAAALCVTCDNDIHSANPLARRHERLPIEPF---FDSADSIVKSSAF---NFLVPSDQN 131
ADAAALCV CD ++SANPLARRH+R+P+ P A S++ + L D+
Sbjct: 92 ADAAALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATVLGDKDEE 151
Query: 132 GGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFF--IDPFIDLNDFD--YPNS 187
S + + D ++ + N N+ +G M+F +D + DL ++ Y N
Sbjct: 152 VDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNG-MYFGEVDEYFDLVGYNSYYDNR 210
Query: 188 FQNH 191
+N+
Sbjct: 211 IENN 214
>TAIR|locus:2010504 [details] [associations]
symbol:BBX13 "B-box domain protein 13" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017
SMART:SM00336 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AC069471
HOGENOM:HOG000243233 ProtClustDB:CLSN2713949 EMBL:AY037206
EMBL:BT002681 IPI:IPI00538865 PIR:B86406 RefSeq:NP_174126.1
UniGene:At.19754 ProteinModelPortal:Q9C7E8 SMR:Q9C7E8 IntAct:Q9C7E8
STRING:Q9C7E8 PRIDE:Q9C7E8 EnsemblPlants:AT1G28050.1 GeneID:839698
KEGG:ath:AT1G28050 TAIR:At1g28050 eggNOG:NOG245106
InParanoid:Q9C7E8 OMA:SCGRYKQ PhylomeDB:Q9C7E8
Genevestigator:Q9C7E8 GermOnline:AT1G28050 Uniprot:Q9C7E8
Length = 433
Score = 188 (71.2 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 36/90 (40%), Positives = 50/90 (55%)
Query: 23 PCDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMN-KHARVWMCEVCEQAPAAVTCKAD 79
PCD C A +FCR D+A LCL CD ++H N ++ KH R +C+ C P +V C D
Sbjct: 8 PCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTD 67
Query: 80 AAALCVTCDNDIHSANPLARRHERLPIEPF 109
LC CD D+H + ++ H R +E F
Sbjct: 68 NLILCQECDWDVHGSCSVSDAHVRSAVEGF 97
Score = 149 (57.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 38/102 (37%), Positives = 59/102 (57%)
Query: 255 VVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGAN-QASQLCG----IDREAR----- 304
V P + ++ TFG + S +D T G + + ++L ++R A+
Sbjct: 329 VQPTKSESNNRPITFGSEKGSNSSSDLHFTEHIAGTSCKTTRLVATKADLERLAQNRGDA 388
Query: 305 VLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA 346
+ RY+EKRK R+++KTIRY SRKA A+TR R++GRF K +EA
Sbjct: 389 MQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKASEA 430
Score = 117 (46.2 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 55 MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPI 106
M+ RV C+ C + A + C+AD A LC+ CD +H+AN L+R+H R I
Sbjct: 1 MSSSERV-PCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQI 51
Score = 80 (33.2 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 1 MPMGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH-NCMNKHA 59
+P ++H+ ++S V ++ CD C +V C D+ LC CD +H +C A
Sbjct: 30 LPCDQQVHTANLLSRK-HVRSQICDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDA 88
Query: 60 RV 61
V
Sbjct: 89 HV 90
>TAIR|locus:2043288 [details] [associations]
symbol:AT2G47890 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009611 "response to wounding"
evidence=RCA] [GO:0009805 "coumarin biosynthetic process"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AC005309 EMBL:AC006072 EMBL:BT023413 IPI:IPI00543399
PIR:G84920 RefSeq:NP_182310.1 UniGene:At.12948 STRING:O82256
EnsemblPlants:AT2G47890.1 GeneID:819401 KEGG:ath:AT2G47890
TAIR:At2g47890 eggNOG:NOG271369 HOGENOM:HOG000240051
InParanoid:O82256 OMA:CSRHARA PhylomeDB:O82256
ProtClustDB:CLSN2683730 Genevestigator:O82256 Uniprot:O82256
Length = 332
Score = 181 (68.8 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADA 80
CD C ++ A V+C+ DSA LCL CD ++H KH R +C+ C ++P+++ C+ +
Sbjct: 13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETER 72
Query: 81 AALCVTCDNDIHSANPLARRHERLPIEPF 109
+ LC CD H+A+ + H R P E F
Sbjct: 73 SVLCQNCDWQHHTAS--SSLHSRRPFEGF 99
Score = 144 (55.7 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 283 VTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAK 342
V V + ++ ++R + + RY+EK+K+R++EK IRY SRK AE+R RI+GRFAK
Sbjct: 269 VPVITSTRSMTHEINSLERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAK 328
Query: 343 RAE 345
A+
Sbjct: 329 AAD 331
Score = 121 (47.7 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 58 HARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHER 103
H R +C+ C+ + A V CKAD+A LC+ CD +H AN L +H R
Sbjct: 7 HQRDRLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFR 52
>TAIR|locus:2051104 [details] [associations]
symbol:BBX12 "B-box domain protein 12" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC002332 EMBL:BT002067 EMBL:AY128321
EMBL:BT006572 IPI:IPI00527026 IPI:IPI00539934 PIR:C84746
RefSeq:NP_850211.1 RefSeq:NP_973589.1 UniGene:At.43493
IntAct:O22800 STRING:O22800 EnsemblPlants:AT2G33500.1 GeneID:817915
KEGG:ath:AT2G33500 TAIR:At2g33500 eggNOG:NOG269245
HOGENOM:HOG000243233 InParanoid:O22800 OMA:ATHERSA PhylomeDB:O22800
ProtClustDB:CLSN2713949 Genevestigator:O22800 Uniprot:O22800
Length = 402
Score = 188 (71.2 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 40/107 (37%), Positives = 58/107 (54%)
Query: 18 SVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMN-KHARVWMCEVCEQAPAAV 74
SV A C+ C A +FCR D+A LCL CD +H N ++ KH R +C+ C + P +V
Sbjct: 8 SVVA--CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSV 65
Query: 75 TCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSA 121
C D LC CD D+H + + HER +E F S+++ +A
Sbjct: 66 RCFTDNLVLCQECDWDVHGSCSSSATHERSAVEGF-SGCPSVLELAA 111
Score = 140 (54.3 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 275 TGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRP 334
T + A V V+ Q +Q +R+ + RY+EK+K R+++KTIRY +RKA AETR
Sbjct: 335 TSNRATRLVAVTNADLEQMAQ----NRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRL 390
Query: 335 RIKGRFAKRAE 345
R+KGRF K +
Sbjct: 391 RVKGRFVKATD 401
Score = 38 (18.4 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 276 GSGADPSVTVSAPGANQASQLCG 298
GS + PS T S + LCG
Sbjct: 200 GSISQPSPTTSFTSLLMSQSLCG 222
>TAIR|locus:2164718 [details] [associations]
symbol:BBX8 "B-box domain protein 8" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005886 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB023039 EMBL:AY039957 EMBL:AY142607
IPI:IPI00527282 RefSeq:NP_199636.1 UniGene:At.7080
ProteinModelPortal:Q9LUA9 IntAct:Q9LUA9 STRING:Q9LUA9
EnsemblPlants:AT5G48250.1 GeneID:834878 KEGG:ath:AT5G48250
TAIR:At5g48250 eggNOG:NOG248444 HOGENOM:HOG000116529
InParanoid:Q9LUA9 OMA:ESACEQG PhylomeDB:Q9LUA9
ProtClustDB:CLSN2684850 Genevestigator:Q9LUA9 GermOnline:AT5G48250
Uniprot:Q9LUA9
Length = 373
Score = 175 (66.7 bits), Expect = 7.0e-21, Sum P(2) = 7.0e-21
Identities = 42/123 (34%), Positives = 60/123 (48%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMNK-HARVWMCEVCEQAPAAVTCKADA 80
CD C + V+CR D+A LCL+CD +H N ++K H+R +CE C PA+V C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDER 64
Query: 81 AALCVTCDNDIHSA--NPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTG 138
+LC CD H + H+R I + S SS ++F + D N S
Sbjct: 65 VSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCM--DLNISSAEES 122
Query: 139 ASE 141
A E
Sbjct: 123 ACE 125
Score = 134 (52.2 bits), Expect = 7.0e-21, Sum P(2) = 7.0e-21
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA 346
R V+RY+EK+K RKF+K +RY SRK A+ R R+KGRF K EA
Sbjct: 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEA 361
Score = 131 (51.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 62 WMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHER 103
+MC+ C + + V C++DAA LC++CD ++HSAN L++RH R
Sbjct: 3 YMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSR 44
>TAIR|locus:2091082 [details] [associations]
symbol:COL9 "CONSTANS-like 9" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017
SMART:SM00336 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0007623 GO:GO:0008270 GO:GO:0003700
EMBL:AC009176 eggNOG:NOG248444 HOGENOM:HOG000116529
ProtClustDB:CLSN2684850 EMBL:AY049290 IPI:IPI00522412
RefSeq:NP_001030659.1 RefSeq:NP_001118599.1 RefSeq:NP_187422.1
RefSeq:NP_974250.1 UniGene:At.18337 STRING:Q9SSE5 PRIDE:Q9SSE5
EnsemblPlants:AT3G07650.1 EnsemblPlants:AT3G07650.2
EnsemblPlants:AT3G07650.3 EnsemblPlants:AT3G07650.4 GeneID:819956
KEGG:ath:AT3G07650 TAIR:At3g07650 InParanoid:Q9SSE5 OMA:TSHIQTE
PhylomeDB:Q9SSE5 Genevestigator:Q9SSE5 GermOnline:AT3G07650
GO:GO:0048579 Uniprot:Q9SSE5
Length = 372
Score = 162 (62.1 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 37/113 (32%), Positives = 58/113 (51%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMNK-HARVWMCEVCEQAPAAVTCKADA 80
CD C + V+CR D+A LCL+CD +H N ++K H+R +CE C PA V C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEER 64
Query: 81 AALCVTCD---------NDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNF 124
+LC CD N+ S++ ++H+R I + S +S ++F
Sbjct: 65 VSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSF 117
Score = 148 (57.2 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 278 GADPSVTVSA-----PGANQASQLCG--IDREARVLRYREKRKNRKFEKTIRYHSRKAYA 330
GA S+ +S P Q + C + R V+RY+EK+K RKF+K +RY SRKA A
Sbjct: 285 GASSSIQLSGEPPWYPPTLQDNNACSHSVTRNNAVMRYKEKKKARKFDKRVRYASRKARA 344
Query: 331 ETRPRIKGRFAKRAEA 346
+ R R+KGRF K EA
Sbjct: 345 DVRRRVKGRFVKAGEA 360
Score = 130 (50.8 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 62 WMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHER 103
+MC+ C + + V C++DAA LC++CD +HSAN L++RH R
Sbjct: 3 YMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSR 44
>TAIR|locus:2129860 [details] [associations]
symbol:BBX9 "B-box domain protein 9" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006863 "purine
nucleobase transport" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:Z97338 EMBL:AL161541 GO:GO:0046872
GO:GO:0008270 GO:GO:0003700 HOGENOM:HOG000116529 IPI:IPI00529586
PIR:F71416 RefSeq:NP_193260.2 UniGene:At.54335
EnsemblPlants:AT4G15250.1 GeneID:827191 KEGG:ath:AT4G15250
TAIR:At4g15250 eggNOG:NOG321931 InParanoid:O23379 OMA:YQDCGIS
PhylomeDB:O23379 ProtClustDB:CLSN2915042 Genevestigator:O23379
GermOnline:AT4G15250 Uniprot:O23379
Length = 330
Score = 159 (61.0 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 32/91 (35%), Positives = 45/91 (49%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADA 80
CD C A ++C+ DSA LCLNCD+ +H+ +H R +CE C P AV C +
Sbjct: 5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNEN 64
Query: 81 AALCVTCDNDIHSANPLARRHERLPIEPFFD 111
+LC C + L R + L P+ D
Sbjct: 65 VSLCQGCQWTASNCTGLGHRLQSL--NPYSD 93
Score = 120 (47.3 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE 345
R+ RY++K+ R F K IRY SRKA A+TR R+KGRF K E
Sbjct: 276 RDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKSGE 320
Score = 39 (18.8 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 182 FDYPNSFQNHHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFC 232
++Y +SF+ ++ G+ S++ + T L N D C
Sbjct: 201 YEYEDSFKEENNIGLPSLL-LPTLSGNVVPNMSLSMSNLTGESNATDYQDC 250
>TAIR|locus:2088748 [details] [associations]
symbol:BBX10 "B-box domain protein 10" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AP000739 HOGENOM:HOG000116529 EMBL:AB493626 IPI:IPI00533145
RefSeq:NP_188826.1 UniGene:At.53422 EnsemblPlants:AT3G21880.1
GeneID:821743 KEGG:ath:AT3G21880 TAIR:At3g21880 eggNOG:NOG290178
InParanoid:Q9LJ44 OMA:KKTRTFG PhylomeDB:Q9LJ44
ProtClustDB:CLSN2685267 Genevestigator:Q9LJ44 Uniprot:Q9LJ44
Length = 364
Score = 154 (59.3 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 30/89 (33%), Positives = 45/89 (50%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADA 80
CD C + A ++C+ D A LCLNCD+ +H+ ++H R +CE C PAA+ C +
Sbjct: 5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEK 64
Query: 81 AALCVTCDNDIHSANPLARRHERLPIEPF 109
+ C C H +N H + PF
Sbjct: 65 VSYCQGCH--WHESNCSELGHRVQSLNPF 91
Score = 134 (52.2 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 31/70 (44%), Positives = 38/70 (54%)
Query: 278 GADPSVTVS-APGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRI 336
G P +S AP C R LRY+EK+ R F K IRY SRKA A+TR R+
Sbjct: 283 GMSPGFIMSEAPWETNFEVSCPQARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRV 342
Query: 337 KGRFAKRAEA 346
KGRF K ++
Sbjct: 343 KGRFVKAGDS 352
Score = 120 (47.3 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 64 CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHER-LPIEPFFDSADSI 116
C+ C + A + CK+D A LC+ CD +HSANPL+ RH R L E F +I
Sbjct: 5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAI 58
>TAIR|locus:2031180 [details] [associations]
symbol:BBX15 "B-box domain protein 15" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016020 "membrane" evidence=IDA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281 GO:GO:0016020
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AY093174
IPI:IPI00533844 PIR:E86384 RefSeq:NP_173915.2 UniGene:At.27494
EnsemblPlants:AT1G25440.1 GeneID:839130 KEGG:ath:AT1G25440
TAIR:At1g25440 eggNOG:NOG293508 HOGENOM:HOG000240360
InParanoid:Q8RWD0 OMA:SDEISHE PhylomeDB:Q8RWD0
ProtClustDB:CLSN2689085 Genevestigator:Q8RWD0 Uniprot:Q8RWD0
Length = 417
Score = 151 (58.2 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 31/44 (70%), Positives = 33/44 (75%)
Query: 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRA 344
REARV RYREKR+ R F K IRY RK AE RPR+KGRF KRA
Sbjct: 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 404
Score = 128 (50.1 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 57 KHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSI 116
K AR C+ C + A C AD A LC +CD+ +HSANPLARRHER+ ++ ++ ++
Sbjct: 12 KTARA--CDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERVRLKT---ASPAV 66
Query: 117 VKSS 120
VK S
Sbjct: 67 VKHS 70
Score = 91 (37.1 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARV 61
A+ CD+C A +C D AFLC +CD +H+ +H RV
Sbjct: 14 ARACDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERV 57
>TAIR|locus:2201277 [details] [associations]
symbol:BBX14 "B-box domain protein 14" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA;TAS] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0030154
"cell differentiation" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 HOGENOM:HOG000240360 ProtClustDB:CLSN2689085
EMBL:AC011915 EMBL:AY054625 EMBL:AY081541 EMBL:AY084427
IPI:IPI00518479 PIR:D96709 RefSeq:NP_564932.1 UniGene:At.23999
UniGene:At.69467 UniGene:At.74856 IntAct:Q8LG76 STRING:Q8LG76
PRIDE:Q8LG76 EnsemblPlants:AT1G68520.1 GeneID:843181
KEGG:ath:AT1G68520 TAIR:At1g68520 eggNOG:NOG257442
InParanoid:Q8LG76 OMA:AFLCHAC PhylomeDB:Q8LG76
Genevestigator:Q8LG76 GermOnline:AT1G68520 Uniprot:Q8LG76
Length = 406
Score = 148 (57.2 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 30/44 (68%), Positives = 33/44 (75%)
Query: 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRA 344
REARV RYREKR+ R F K IRY RK AE RPR+KGRF KR+
Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 400
Score = 126 (49.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 57 KHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIE 107
K AR C+ C + A C AD A LC CD +HSANPLARRHER+ ++
Sbjct: 12 KTARA--CDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHERVRLK 60
Score = 86 (35.3 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARV 61
A+ CD+C A +C D AFLC CD +H+ +H RV
Sbjct: 14 ARACDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHERV 57
>TAIR|locus:2031581 [details] [associations]
symbol:BBX16 "B-box domain protein 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0009641 "shade avoidance" evidence=IMP] [GO:0010223 "secondary
shoot formation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC016662 HOGENOM:HOG000240360 EMBL:BT015740
EMBL:BT020183 IPI:IPI00516267 PIR:C96766 RefSeq:NP_177528.1
UniGene:At.34943 IntAct:Q9C9A9 STRING:Q9C9A9
EnsemblPlants:AT1G73870.1 GeneID:843723 KEGG:ath:AT1G73870
TAIR:At1g73870 eggNOG:NOG320376 InParanoid:Q9C9A9 OMA:EAKCENG
PhylomeDB:Q9C9A9 ProtClustDB:CLSN2914358 Genevestigator:Q9C9A9
GermOnline:AT1G73870 Uniprot:Q9C9A9
Length = 392
Score = 155 (59.6 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 31/44 (70%), Positives = 34/44 (77%)
Query: 300 DREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKR 343
+REARVLRY+EKR+ R F K IRY RK AE RPRIKGRF KR
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKR 387
Score = 115 (45.5 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 64 CEVC-EQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIE 107
C+ C +++ A+ C AD A LC +CD IHSAN LA+RHER+ ++
Sbjct: 22 CDACMKRSRASWYCPADDAFLCQSCDASIHSANHLAKRHERVRLQ 66
Score = 103 (41.3 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 3 MGIELHSVKVISGGWSVAAKPCDTC-KAAAAAVFCRVDSAFLCLNCDLRIHNCMN---KH 58
M +++ S G +AA+ CD C K + A+ +C D AFLC +CD IH+ + +H
Sbjct: 1 MVVDVESRTASVTGEKMAARGCDACMKRSRASWYCPADDAFLCQSCDASIHSANHLAKRH 60
Query: 59 ARV 61
RV
Sbjct: 61 ERV 63
>TAIR|locus:2028421 [details] [associations]
symbol:BBX17 "B-box domain protein 17" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 IPI:IPI00544498
RefSeq:NP_175339.2 UniGene:At.38297 EnsemblPlants:AT1G49130.1
GeneID:841336 KEGG:ath:AT1G49130 OMA:VATKHER Uniprot:F4I1N0
Length = 326
Score = 158 (60.7 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 33/50 (66%), Positives = 39/50 (78%)
Query: 300 DREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA-DS 348
+REARV RYR+KRKNR FEK IRY RK A+ RPR+KGRF +R+ A DS
Sbjct: 277 EREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRSLAIDS 326
Score = 105 (42.0 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 64 CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERL 104
CE+C A C +D A LC CD +HSAN +A +HER+
Sbjct: 28 CELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERV 68
Score = 76 (31.8 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 22 KPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMN---KHARV 61
+ C+ C A +C D AFLC CD +H+ + KH RV
Sbjct: 26 RACELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERV 68
>TAIR|locus:2050130 [details] [associations]
symbol:BBX18 "B-box domain protein 18" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010264 "myo-inositol hexakisphosphate biosynthetic process"
evidence=RCA] InterPro:IPR000315 Pfam:PF00643 PROSITE:PS50119
SMART:SM00336 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008270
EMBL:AC006841 GO:GO:0003700 GO:GO:0005622 HOGENOM:HOG000239240
EMBL:AY060570 EMBL:AY125573 IPI:IPI00525924 PIR:H84599
RefSeq:NP_565507.1 UniGene:At.27367 ProteinModelPortal:Q9SJU5
SMR:Q9SJU5 STRING:Q9SJU5 EnsemblPlants:AT2G21320.1 GeneID:816671
KEGG:ath:AT2G21320 TAIR:At2g21320 eggNOG:NOG329451
InParanoid:Q9SJU5 OMA:KCNKLAS PhylomeDB:Q9SJU5
ProtClustDB:CLSN2914972 ArrayExpress:Q9SJU5 Genevestigator:Q9SJU5
Uniprot:Q9SJU5
Length = 172
Score = 187 (70.9 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 42/132 (31%), Positives = 61/132 (46%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWM--------CEVCEQAPA 72
CD C++AAA VFC D A LC +CD ++H C ++H RV + C++CE APA
Sbjct: 5 CDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICENAPA 64
Query: 73 AVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNG 132
C+ D ++LC+ CD +H R L + D + +G
Sbjct: 65 FFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPGDKPNHADQLGLRCQKASSG 124
Query: 133 -GSEFTGASEHD 143
G E G +HD
Sbjct: 125 RGQESNGNGDHD 136
Score = 127 (49.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 27/62 (43%), Positives = 35/62 (56%)
Query: 63 MCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPI-EPF-FDSADSIVKSS 120
+C+ CE A A V C AD AALC +CD +H N LA RH R+ + +P S D +
Sbjct: 4 LCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICENAP 63
Query: 121 AF 122
AF
Sbjct: 64 AF 65
>TAIR|locus:2198841 [details] [associations]
symbol:STO "SALT TOLERANCE" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009416 "response to light stimulus"
evidence=IEP] [GO:0009640 "photomorphogenesis" evidence=IGI]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=IGI;RCA] [GO:0009737 "response
to abscisic acid stimulus" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding" evidence=ISS]
InterPro:IPR000315 Pfam:PF00643 PROSITE:PS50119 SMART:SM00336
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0009651 GO:GO:0008270 GO:GO:0003700
GO:GO:0080167 GO:GO:0009640 EMBL:AC024174 HOGENOM:HOG000239240
ProtClustDB:CLSN2682276 EMBL:X95572 EMBL:AY079377 EMBL:AY045794
IPI:IPI00518701 PIR:E86195 RefSeq:NP_172094.1 UniGene:At.23289
UniGene:At.38035 UniGene:At.70752 ProteinModelPortal:Q96288
SMR:Q96288 IntAct:Q96288 MINT:MINT-189223 STRING:Q96288
EnsemblPlants:AT1G06040.1 GeneID:837113 KEGG:ath:AT1G06040
TAIR:At1g06040 eggNOG:NOG313367 InParanoid:Q96288 OMA:PRCDICQ
PhylomeDB:Q96288 Genevestigator:Q96288 Uniprot:Q96288
Length = 248
Score = 165 (63.1 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 35/92 (38%), Positives = 48/92 (52%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCM-NKHARVWM---------CEVCEQAP 71
CD C+ A A V C D A LC CD+ IH N + +KH R+ + C++C++
Sbjct: 5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKA 64
Query: 72 AAVTCKADAAALCVTCDNDIHSANPLARRHER 103
A + C D A LC CD IH AN + H+R
Sbjct: 65 AFIFCVEDRALLCRDCDESIHVANSRSANHQR 96
Score = 154 (59.3 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 64 CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF---FDSADSIVKSS 120
C+VCE+APA V C AD AALC CD +IH+AN LA +H+RL + F D + +
Sbjct: 5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKA 64
Query: 121 AFNFLV 126
AF F V
Sbjct: 65 AFIFCV 70
>TAIR|locus:2207155 [details] [associations]
symbol:AT1G05290 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002684 GO:GO:0003700 EMBL:DQ446230 IPI:IPI00535628
RefSeq:NP_172021.2 UniGene:At.51486 EnsemblPlants:AT1G05290.1
GeneID:837025 KEGG:ath:AT1G05290 TAIR:At1g05290 OMA:FEILQIF
PhylomeDB:Q1PFY3 ProtClustDB:CLSN2920218 ArrayExpress:Q1PFY3
Genevestigator:Q1PFY3 Uniprot:Q1PFY3
Length = 369
Score = 136 (52.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 30/52 (57%), Positives = 36/52 (69%)
Query: 300 DREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVD 351
DRE RY EK+K RKF K IRY SRK+ A+T+ R+KGRF K A AD + D
Sbjct: 306 DREEAKKRYFEKKKKRKFGKQIRYESRKSTADTKKRMKGRFTK-AGADYDYD 356
Score = 76 (31.8 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 41 AFLCLNCDLRIHN--CMNKH--ARVWMCEVCEQAPAAVTCKADAAALCVTC 87
A LCL CDL++H+ +N + +R+ +C C A V LC +C
Sbjct: 10 ARLCLQCDLKLHSKSSVNNYNYSRIPLCNNCVSQTALVESLEQGLCLCQSC 60
Score = 48 (22.0 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 81 AALCVTCDNDIHSANPLAR-RHERLPI 106
A LC+ CD +HS + + + R+P+
Sbjct: 10 ARLCLQCDLKLHSKSSVNNYNYSRIPL 36
Score = 41 (19.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 5 IELHSVKVISGGWSVAAKP-CDTCKAAAAAVFCRVDSAFLCLNC 47
++LHS ++ ++ + P C+ C + A V LC +C
Sbjct: 18 LKLHSKSSVNN-YNYSRIPLCNNCVSQTALVESLEQGLCLCQSC 60
>TAIR|locus:2005624 [details] [associations]
symbol:BBX21 "B-box domain protein 21" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009641 "shade avoidance"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR000315 Pfam:PF00643
PROSITE:PS50119 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 GO:GO:0009641 HOGENOM:HOG000239240 EMBL:AC006434
EMBL:AB493536 IPI:IPI00536705 PIR:G96785 RefSeq:NP_177686.1
UniGene:At.34761 UniGene:At.69592 ProteinModelPortal:Q9LQZ7
SMR:Q9LQZ7 IntAct:Q9LQZ7 STRING:Q9LQZ7 EnsemblPlants:AT1G75540.1
GeneID:843890 KEGG:ath:AT1G75540 TAIR:At1g75540 eggNOG:NOG315170
InParanoid:Q9LQZ7 OMA:CDICQDK PhylomeDB:Q9LQZ7
ProtClustDB:CLSN2682536 Genevestigator:Q9LQZ7 GermOnline:AT1G75540
Uniprot:Q9LQZ7
Length = 331
Score = 165 (63.1 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 41/132 (31%), Positives = 59/132 (44%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWM------------CEVCE 68
CD C A+VFC D A LC CD ++H+ +KH R + C++C+
Sbjct: 5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQ 64
Query: 69 QAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPS 128
A + C+ D A LC CD+ IH+AN ++H+R + SA S V S
Sbjct: 65 DKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKSSSSS 124
Query: 129 DQNGGSEFTGAS 140
N G+S
Sbjct: 125 SSNQDFSVPGSS 136
>TAIR|locus:2061330 [details] [associations]
symbol:STH "salt tolerance homologue" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0019904 "protein domain specific binding"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0010224 "response to UV-B"
evidence=RCA] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] InterPro:IPR000315 Pfam:PF00643
PROSITE:PS50119 SMART:SM00336 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AC007169 HOGENOM:HOG000239240 UniGene:At.24192
UniGene:At.69838 EMBL:AF323666 EMBL:AF325077 EMBL:AF370311
EMBL:AY063097 IPI:IPI00545007 PIR:A84720 RefSeq:NP_565722.1
ProteinModelPortal:Q9SID1 SMR:Q9SID1 IntAct:Q9SID1 STRING:Q9SID1
EnsemblPlants:AT2G31380.1 GeneID:817696 KEGG:ath:AT2G31380
TAIR:At2g31380 eggNOG:NOG279894 InParanoid:Q9SID1 OMA:CAKCDVE
PhylomeDB:Q9SID1 ProtClustDB:CLSN2682276 Genevestigator:Q9SID1
GermOnline:AT2G31380 Uniprot:Q9SID1
Length = 238
Score = 155 (59.6 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 64 CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF---FDSADSIVKSS 120
C+VCE+APA + C AD AALC CD ++H+AN LA +H+RL ++ F D ++ +
Sbjct: 5 CDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKA 64
Query: 121 AFNFLV 126
AF F V
Sbjct: 65 AFIFCV 70
Score = 151 (58.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/92 (32%), Positives = 45/92 (48%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWM---------CEVCEQAP 71
CD C+ A A + C D A LC CD+ +H +KH R+++ C++C +
Sbjct: 5 CDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKA 64
Query: 72 AAVTCKADAAALCVTCDNDIHSANPLARRHER 103
A + C D A LC CD H+ N + H+R
Sbjct: 65 AFIFCVEDRALLCRDCDEATHAPNTRSANHQR 96
>TAIR|locus:2062749 [details] [associations]
symbol:AT2G46670 "AT2G46670" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 GenomeReviews:CT485783_GR UniGene:At.65052
EMBL:AB493594 IPI:IPI00540845 RefSeq:NP_182190.2
EnsemblPlants:AT2G46670.1 GeneID:819279 KEGG:ath:AT2G46670
TAIR:At2g46670 PhylomeDB:C0SV91 Genevestigator:Q3EBF0
Uniprot:C0SV91
Length = 183
Score = 137 (53.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 272 NMSTGSG-ADPSVTVSAPGANQASQL--CGIDREARVLRYREKRKNRKFEKTIRYHSRKA 328
+ ST G A S + P ++++ REA ++++R KRK+R F+K +RY SRK
Sbjct: 100 SQSTNEGIAGQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 159
Query: 329 YAETRPRIKGRFAKRAEADS 348
AE RPR+KG+F + +D+
Sbjct: 160 LAEQRPRVKGQFVRTVNSDA 179
>TAIR|locus:2007482 [details] [associations]
symbol:AT1G07050 "AT1G07050" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AY085907 EMBL:AK176556 EMBL:AB493438
IPI:IPI00532995 RefSeq:NP_563778.1 UniGene:At.42316 STRING:Q8LDM8
EnsemblPlants:AT1G07050.1 GeneID:837216 KEGG:ath:AT1G07050
TAIR:At1g07050 eggNOG:NOG283732 HOGENOM:HOG000090331
InParanoid:Q8LDM8 OMA:NMRREAS PhylomeDB:Q8LDM8
ProtClustDB:CLSN2687713 ArrayExpress:Q8LDM8 Genevestigator:Q8LDM8
Uniprot:Q8LDM8
Length = 195
Score = 140 (54.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 28/43 (65%), Positives = 32/43 (74%)
Query: 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKR 343
REA VLRY+EKR++R F K IRY RK A+ RPR KGRF KR
Sbjct: 151 REASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
>TAIR|locus:2145698 [details] [associations]
symbol:AT5G14370 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002688 EMBL:AY050892 EMBL:AY091296
IPI:IPI00522642 RefSeq:NP_568300.1 UniGene:At.5173
EnsemblPlants:AT5G14370.1 GeneID:831288 KEGG:ath:AT5G14370
TAIR:At5g14370 HOGENOM:HOG000151170 InParanoid:Q949T9 OMA:WVSYSEV
PhylomeDB:Q949T9 ProtClustDB:CLSN2689669 ArrayExpress:Q949T9
Genevestigator:Q949T9 Uniprot:Q949T9
Length = 339
Score = 150 (57.9 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 29/46 (63%), Positives = 35/46 (76%)
Query: 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA 346
REA +LRY+EKR+NR F K IRY RK AE RPR+KGRF KR ++
Sbjct: 294 REASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKREDS 339
>TAIR|locus:2199262 [details] [associations]
symbol:BBX27 "B-box domain protein 27" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 PROSITE:PS50119 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC016447 EMBL:AK117800 IPI:IPI00522806
PIR:C96705 RefSeq:NP_176986.1 UniGene:At.35557
ProteinModelPortal:Q9C9F4 EnsemblPlants:AT1G68190.1 GeneID:843148
KEGG:ath:AT1G68190 TAIR:At1g68190 eggNOG:NOG293044
HOGENOM:HOG000111890 InParanoid:Q9C9F4 OMA:CIADTAN PhylomeDB:Q9C9F4
ProtClustDB:CLSN2717503 Genevestigator:Q9C9F4 GermOnline:AT1G68190
Uniprot:Q9C9F4
Length = 356
Score = 150 (57.9 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 29/84 (34%), Positives = 42/84 (50%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMN-KHARVWMCEVCEQAPAAVTCKADA 80
C+ CKA A V+C D+A LCL CD ++H N ++ +H R +C+ C+ P V C
Sbjct: 14 CEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRCFDHK 73
Query: 81 AALCVTCDNDIHSANPLARRHERL 104
LC C++ H R L
Sbjct: 74 MFLCHGCNDKFHGGGSSEHRRRDL 97
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 63 MCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAF 122
+CE C+ A V C AD A LC+TCD +HSAN L+ RH R + + +V+
Sbjct: 13 VCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRCFDH 72
Query: 123 NFLVPSDQNGGSEFTGASEH 142
+ N G+SEH
Sbjct: 73 KMFLCHGCNDKFHGGGSSEH 92
>TAIR|locus:2122759 [details] [associations]
symbol:bbx23 "B-box domain protein 23" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 Pfam:PF00643 PROSITE:PS50119 SMART:SM00336
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008270 GO:GO:0003700
GO:GO:0005622 EMBL:AF096373 EMBL:AL161516 HOGENOM:HOG000239240
EMBL:AL049488 EMBL:AY122916 IPI:IPI00525768 PIR:T01973
RefSeq:NP_192762.1 UniGene:At.33641 ProteinModelPortal:O82617
SMR:O82617 EnsemblPlants:AT4G10240.1 GeneID:826615
KEGG:ath:AT4G10240 TAIR:At4g10240 eggNOG:NOG273282
InParanoid:O82617 OMA:TENSECS PhylomeDB:O82617
ProtClustDB:CLSN2915973 Genevestigator:O82617 Uniprot:O82617
Length = 162
Score = 130 (50.8 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 64 CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSA 121
CEVCE+A A V C +D A LC CD +H AN L +RH R+ ++ D+A + S A
Sbjct: 5 CEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQK--DAASATTASGA 60
>TAIR|locus:2195518 [details] [associations]
symbol:AT1G63820 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002684 GenomeReviews:CT485782_GR
HOGENOM:HOG000090374 ProtClustDB:CLSN2681537 EMBL:AK176159
IPI:IPI00542615 RefSeq:NP_176567.2 UniGene:At.50956
EnsemblPlants:AT1G63820.1 GeneID:842685 KEGG:ath:AT1G63820
TAIR:At1g63820 eggNOG:NOG240378 InParanoid:Q67ZF8 OMA:TQRNFTK
PhylomeDB:Q67ZF8 ArrayExpress:Q67ZF8 Genevestigator:Q67ZF8
Uniprot:Q67ZF8
Length = 293
Score = 134 (52.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 267 YTFGRNMSTGSGADPSVTVSAPGANQASQL---CGIDREARVLRYREKRKNRKFEKTIRY 323
+T R+ S+ A+ S T G Q+ ++ +R+ ++ +YR KR R F KTI+Y
Sbjct: 155 FTGQRSYSSPLAAESSPTTVFSGDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKY 214
Query: 324 HSRKAYAETRPRIKGRFAKRAE 345
RK A+ RPR++GRFA+ E
Sbjct: 215 ACRKTLADNRPRVRGRFARNDE 236
Score = 50 (22.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 78 ADAAALCVTCDNDIHSANPLARRHERLPIEPFFD-SADSIVKSSAFNFLVPSDQNGGSEF 136
+ ++++C + D D+ S++ + P+ + S D S F P+ + S
Sbjct: 12 SSSSSICHSTDPDMFSSDTTTTT-DLYCNNPYLNPSMDDHQSLSFFESFTPTTHHILSSS 70
Query: 137 TGASEHDGVDSASWLIPNSKP---GIENAGEMKSGDMFFIDPFIDLNDFDYPNSFQNHH 192
S+ + + + NS P G EN +K+ + F PF D + ++FQN +
Sbjct: 71 PPISQ---LQTLTLTHTNSFPNFSGFENFDTVKTEQLLFNSPF-DAPFMEDSSNFQNQN 125
Score = 38 (18.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 143 DGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYPN-SF 188
DG S+S + ++ P + ++ + D++ +P+++ + D+ + SF
Sbjct: 9 DGSSSSSSICHSTDPDMFSSDTTTTTDLYCNNPYLNPSMDDHQSLSF 55
>TAIR|locus:2120207 [details] [associations]
symbol:BZS1 "BZS1" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010200 "response to chitin"
evidence=IEP] [GO:0080167 "response to karrikin" evidence=IEP]
[GO:0009741 "response to brassinosteroid stimulus" evidence=IEP]
InterPro:IPR000315 Pfam:PF00643 PROSITE:PS50119 SMART:SM00336
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0080167
GO:GO:0010200 EMBL:AL035679 EMBL:AL161594 EMBL:AK118879
EMBL:BT028893 IPI:IPI00535007 PIR:T06067 RefSeq:NP_195618.2
UniGene:At.31120 ProteinModelPortal:Q0IGM7 SMR:Q0IGM7 PRIDE:Q0IGM7
EnsemblPlants:AT4G39070.1 GeneID:830062 KEGG:ath:AT4G39070
TAIR:At4g39070 eggNOG:NOG257043 HOGENOM:HOG000239240
InParanoid:Q0IGM7 OMA:DICGERR PhylomeDB:Q0IGM7
ProtClustDB:CLSN2915067 Genevestigator:Q0IGM7 GO:GO:0009741
Uniprot:Q0IGM7
Length = 242
Score = 142 (55.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 32/93 (34%), Positives = 42/93 (45%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWM----------CEVCEQA 70
C C A+VFC D A LC CD +H KH R + C++C +
Sbjct: 5 CAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGER 64
Query: 71 PAAVTCKADAAALCVTCDNDIHSANPLARRHER 103
A + C+ D A LC CD IH AN ++H R
Sbjct: 65 RALLFCQEDRAILCRECDIPIHQANEHTKKHNR 97
Score = 123 (48.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 60 RVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPI-EPFFDSA 113
++W C VC++ A+V C AD AALC CD +H AN LA +H R + P F A
Sbjct: 2 KIW-CAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDA 55
>TAIR|locus:1009023318 [details] [associations]
symbol:BBX30 "B-box domain protein 30" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000315 Pfam:PF00643 PROSITE:PS50119
SMART:SM00336 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008270
GO:GO:0005622 EMBL:DQ487602 IPI:IPI00657516 RefSeq:NP_001031645.1
UniGene:At.63271 EnsemblPlants:AT4G15248.1 GeneID:3769879
KEGG:ath:AT4G15248 TAIR:At4g15248 OMA:ELCGENA PhylomeDB:Q1G3I2
Genevestigator:Q2V3I2 Uniprot:Q1G3I2
Length = 117
Score = 122 (48.0 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 26/50 (52%), Positives = 30/50 (60%)
Query: 54 CMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHER 103
C H CE+C + A V C+ADAA LC CD +HSAN LARRH R
Sbjct: 22 CTESHKAPVSCELCGEN-ATVYCEADAAFLCRKCDRWVHSANFLARRHLR 70
>TAIR|locus:2175564 [details] [associations]
symbol:CIA2 "chloroplast import apparatus 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEP] [GO:0045036 "protein targeting to chloroplast"
evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR010402
Pfam:PF06203 PROSITE:PS51017 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009507 EMBL:AB023042 EMBL:AF359387
EMBL:AF372929 EMBL:AY078036 EMBL:AK316813 EMBL:AK221521
IPI:IPI00517190 IPI:IPI00544089 IPI:IPI00656805
RefSeq:NP_001032087.1 RefSeq:NP_568852.2 RefSeq:NP_851201.1
UniGene:At.9681 IntAct:Q9LU68 STRING:Q9LU68 PaxDb:Q9LU68
PRIDE:Q9LU68 EnsemblPlants:AT5G57180.2 GeneID:835824
KEGG:ath:AT5G57180 GeneFarm:2245 TAIR:At5g57180 eggNOG:NOG245310
HOGENOM:HOG000238782 InParanoid:Q9LU68 OMA:YLRSLMV PhylomeDB:Q9LU68
ProtClustDB:CLSN2680548 Genevestigator:Q9LU68 GO:GO:0045036
Uniprot:Q9LU68
Length = 435
Score = 138 (53.6 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKR 343
REA VLRY+EKR+ R F K IRY RK A+ RPR+KGRF +R
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRR 425
>TAIR|locus:2195643 [details] [associations]
symbol:BBX26 "B-box domain protein 26" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 PROSITE:PS50119 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0005622
EMBL:AC004473 IPI:IPI00523867 PIR:T02277 RefSeq:NP_176231.1
UniGene:At.52283 ProteinModelPortal:O80748
EnsemblPlants:AT1G60250.1 GeneID:842320 KEGG:ath:AT1G60250
TAIR:At1g60250 eggNOG:NOG305480 HOGENOM:HOG000115139 OMA:FERSCHG
PhylomeDB:O80748 ProtClustDB:CLSN2913661 Genevestigator:O80748
Uniprot:O80748
Length = 251
Score = 133 (51.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCD-LRIHNCMN-KHARVWMCEVCEQAPAAVTCKA 78
A+ C TC+ A + C ++ CL CD LR HN ++ +H R +C+ C P+ + C
Sbjct: 2 AQVCHTCRHVTAVIHCVTEALNFCLTCDNLRHHNNIHAEHVRYQLCDNCSMYPSILFCYE 61
Query: 79 DAAALCVTCDNDIHSANPLARRHE 102
D LC +C + H N H+
Sbjct: 62 DGMVLCQSCYS--HHYNCATNGHQ 83
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 140 (54.3 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 270 GRNMSTGSGA------DPSVTVSAPGA-NQASQLCGIDREARVLRYREKRKNRKFEKTIR 322
G NM + +GA D S + S G+ N A + REA + ++R+KRK R F K +R
Sbjct: 631 GMNMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVR 690
Query: 323 YHSRKAYAETRPRIKGRFAKRAEADSE 349
Y SRK AE RPR++G+F ++ A ++
Sbjct: 691 YQSRKKLAEQRPRVRGQFVRKTAAATD 717
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 137 (53.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 272 NMSTGSG-ADPSVTVSAPGANQASQL--CGIDREARVLRYREKRKNRKFEKTIRYHSRKA 328
+ ST G A S + P ++++ REA ++++R KRK+R F+K +RY SRK
Sbjct: 385 SQSTNEGIAGQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 444
Query: 329 YAETRPRIKGRFAKRAEADS 348
AE RPR+KG+F + +D+
Sbjct: 445 LAEQRPRVKGQFVRTVNSDA 464
>TAIR|locus:2018344 [details] [associations]
symbol:AT1G04500 "AT1G04500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009827 "plant-type cell wall modification"
evidence=RCA] [GO:0009860 "pollen tube growth" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:DQ446226 EMBL:AB493431
IPI:IPI00533670 RefSeq:NP_171944.2 UniGene:At.42446
EnsemblPlants:AT1G04500.1 GeneID:839510 KEGG:ath:AT1G04500
TAIR:At1g04500 HOGENOM:HOG000239716 InParanoid:Q1PFY7 OMA:SPSCSFL
PhylomeDB:Q1PFY7 ProtClustDB:CLSN2680683 Genevestigator:Q1PFY7
Uniprot:Q1PFY7
Length = 386
Score = 134 (52.2 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 288 PGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE 345
P N+ +L R+ ++ RY +KR R F K I+Y RK A++RPR++GRFAK E
Sbjct: 275 PSFNKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDE 332
>TAIR|locus:2168083 [details] [associations]
symbol:AT5G59990 "AT5G59990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB015475 EMBL:AY924872
IPI:IPI00537727 RefSeq:NP_200807.1 UniGene:At.55631
EnsemblPlants:AT5G59990.1 GeneID:836121 KEGG:ath:AT5G59990
TAIR:At5g59990 HOGENOM:HOG000064609 InParanoid:Q9FJD8 OMA:RESSTVW
PhylomeDB:Q9FJD8 ProtClustDB:CLSN2686501 ArrayExpress:Q9FJD8
Genevestigator:Q9FJD8 Uniprot:Q9FJD8
Length = 241
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 252 DVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREK 311
D G V S D+ + R ST ++ + + G ++A + +++ ++ +YR K
Sbjct: 117 DDGPVRRALSAGDLPRSSRRESST-VWSESNAIIE--GMSKAYKYSPEEKKEKIEKYRSK 173
Query: 312 RKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSE 349
R R F K I+Y RK A++RPRI+GRFA+ E +
Sbjct: 174 RNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEISQQ 211
>TAIR|locus:2177911 [details] [associations]
symbol:AT5G41380 "AT5G41380" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AY800647 EMBL:AY924846
IPI:IPI00519705 RefSeq:NP_198954.2 UniGene:At.51252
EnsemblPlants:AT5G41380.1 GeneID:834140 KEGG:ath:AT5G41380
TAIR:At5g41380 HOGENOM:HOG000090374 InParanoid:Q5Q0A4 OMA:VVEIPNI
PhylomeDB:Q5Q0A4 ProtClustDB:CLSN2681537 Genevestigator:Q5Q0A4
Uniprot:Q5Q0A4
Length = 307
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 300 DREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE 345
+R+ ++ +YR KR R F KTI+Y RK A++RPRI+GRFA+ E
Sbjct: 214 ERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFARNDE 259
>TAIR|locus:2051099 [details] [associations]
symbol:AT2G33350 "AT2G33350" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 ProtClustDB:CLSN2680683 EMBL:AY600556 IPI:IPI00520380
RefSeq:NP_180893.2 UniGene:At.50819 EnsemblPlants:AT2G33350.1
GeneID:817898 KEGG:ath:AT2G33350 TAIR:At2g33350 InParanoid:Q6E267
OMA:GSEINKP PhylomeDB:Q6E267 Genevestigator:Q6E267 Uniprot:Q6E267
Length = 410
Score = 128 (50.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 291 NQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE 345
N+ +L R+ ++ RY +KR R F K I+Y RK A++RPR++GRFAK E
Sbjct: 301 NKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDE 355
>TAIR|locus:2132902 [details] [associations]
symbol:AT4G27900 "AT4G27900" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002687 EMBL:AL161572 EMBL:AL035524 EMBL:AY062469
EMBL:AY093297 IPI:IPI00527124 PIR:T02891 RefSeq:NP_194519.1
RefSeq:NP_849461.1 UniGene:At.26998 IntAct:Q9SUE8 PRIDE:Q9SUE8
EnsemblPlants:AT4G27900.1 EnsemblPlants:AT4G27900.2 GeneID:828903
KEGG:ath:AT4G27900 TAIR:At4g27900 HOGENOM:HOG000241629
InParanoid:Q9SUE8 OMA:ISCTSED PhylomeDB:Q9SUE8
ProtClustDB:CLSN2685530 Genevestigator:Q9SUE8 Uniprot:Q9SUE8
Length = 261
Score = 123 (48.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 300 DREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE 345
DR ++ RYR K+ R F + I+Y RKA A+++PRI+GRFAK E
Sbjct: 213 DRREKLSRYRNKKSKRNFGRKIKYACRKALADSQPRIRGRFAKTEE 258
>TAIR|locus:2095562 [details] [associations]
symbol:BBX31 "B-box domain protein 31" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010224 "response to UV-B" evidence=IEP;RCA] [GO:0009744
"response to sucrose stimulus" evidence=RCA] InterPro:IPR000315
Pfam:PF00643 SMART:SM00336 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 GO:GO:0010224
EMBL:AB028622 EMBL:AY086564 EMBL:AB493627 IPI:IPI00531471
RefSeq:NP_188827.1 UniGene:At.37979 ProteinModelPortal:Q9LRM4
EnsemblPlants:AT3G21890.1 GeneID:821744 KEGG:ath:AT3G21890
TAIR:At3g21890 eggNOG:NOG259331 HOGENOM:HOG000090727
InParanoid:Q9LRM4 OMA:CEADSAF PhylomeDB:Q9LRM4
ProtClustDB:CLSN2685268 Genevestigator:Q9LRM4 Uniprot:Q9LRM4
Length = 121
Score = 104 (41.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 64 CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHER 103
CE+C+ A+V C+AD+A LC CD +H AN LA RH R
Sbjct: 31 CELCD-GDASVFCEADSAFLCRKCDRWVHGANFLAWRHVR 69
Score = 97 (39.2 bits), Expect = 0.00024, P = 0.00024
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 24 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMN-KHARVWMCEVCEQAPAAVTCKADA 80
C+ C A+ VFC DSAFLC CD +H N + +H R +C C++ +T +
Sbjct: 31 CELCDGDAS-VFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQK----LTRR--- 82
Query: 81 AALCVTCDNDIHSANP 96
C+ D+D H P
Sbjct: 83 ---CLVGDHDFHVVLP 95
>TAIR|locus:2178441 [details] [associations]
symbol:AT5G53420 "AT5G53420" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 EMBL:AY099753 EMBL:BT000280 IPI:IPI00547333
RefSeq:NP_568793.1 UniGene:At.8948 PRIDE:Q8L602
EnsemblPlants:AT5G53420.1 GeneID:835423 KEGG:ath:AT5G53420
TAIR:At5g53420 InParanoid:Q8L602 OMA:TINENQD PhylomeDB:Q8L602
ProtClustDB:CLSN2690008 ArrayExpress:Q8L602 Genevestigator:Q8L602
Uniprot:Q8L602
Length = 264
Score = 119 (46.9 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 300 DREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE 345
DR ++ RY+ K+ R F + I+Y RKA A+++PR++GRFAK E
Sbjct: 217 DRREKLSRYKNKKSRRNFGRKIKYACRKALADSQPRVRGRFAKTEE 262
>TAIR|locus:2090374 [details] [associations]
symbol:ASML2 "activator of spomin::LUC2" species:3702
"Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
[GO:0010182 "sugar mediated signaling pathway" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0045893 GO:GO:0010182
EMBL:AC023838 EMBL:AP000385 EMBL:AY085594 EMBL:AY885244
IPI:IPI00524505 RefSeq:NP_566437.1 UniGene:At.39532 STRING:Q9LDL9
EnsemblPlants:AT3G12890.1 GeneID:820472 KEGG:ath:AT3G12890
TAIR:At3g12890 eggNOG:NOG274941 HOGENOM:HOG000152986
InParanoid:Q9LDL9 OMA:FARNNDT PhylomeDB:Q9LDL9
ProtClustDB:CLSN2914977 Genevestigator:Q9LDL9 Uniprot:Q9LDL9
Length = 251
Score = 118 (46.6 bits), Expect = 0.00011, P = 0.00011
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 300 DREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYK 355
+R+ R++RY +K+ R F KTI+Y RK A+ R R++GRFA+ + E + K
Sbjct: 138 ERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRRVRVRGRFARNNDTCEEQPHMSK 193
>TAIR|locus:2120850 [details] [associations]
symbol:CIL "AT4G25990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002687 HOGENOM:HOG000238782
ProtClustDB:CLSN2680548 EMBL:AB493701 IPI:IPI00538830
RefSeq:NP_849445.1 UniGene:At.2953 EnsemblPlants:AT4G25990.2
GeneID:828705 KEGG:ath:AT4G25990 TAIR:At4g25990 eggNOG:NOG266168
OMA:ISTRRPR PhylomeDB:C0SVJ8 ArrayExpress:C0SVJ8
Genevestigator:C0SVJ8 Uniprot:C0SVJ8
Length = 409
Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
Identities = 24/37 (64%), Positives = 28/37 (75%)
Query: 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIK 337
REA VLRY+EKR+NR F K IRY RK A+ RPR+K
Sbjct: 341 REASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPRMK 377
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 25/57 (43%), Positives = 39/57 (68%)
Query: 288 PGANQASQLCGIDR-EARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKR 343
P +N+ ++ +DR E +L++R KR R F+K IRY +RK AE RPR+KG+F ++
Sbjct: 520 PPSNEV-RVNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRK 575
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 376 338 0.00094 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 47
No. of states in DFA: 620 (66 KB)
Total size of DFA: 252 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.52u 0.10s 27.62t Elapsed: 00:00:02
Total cpu time: 27.53u 0.10s 27.63t Elapsed: 00:00:02
Start: Tue May 21 04:29:29 2013 End: Tue May 21 04:29:31 2013