Query 017166
Match_columns 376
No_of_seqs 301 out of 885
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 10:00:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 98.0 3.2E-06 1.1E-10 68.2 3.5 80 22-107 4-100 (101)
2 2jun_A Midline-1; B-BOX, TRIM, 94.8 0.008 2.7E-07 48.1 1.3 43 62-104 4-49 (101)
3 3ogl_Q JAZ1 incomplete degron 94.5 0.019 6.6E-07 34.7 2.0 19 298-316 3-21 (21)
4 2d8u_A Ubiquitin ligase TRIM63 93.1 0.046 1.6E-06 40.2 2.5 50 56-111 3-53 (64)
5 3ogk_Q JAZ1 incomplete degron 92.1 0.045 1.5E-06 33.5 0.9 19 301-319 1-19 (22)
6 2yvr_A Transcription intermedi 91.9 0.061 2.1E-06 37.8 1.7 46 58-109 3-48 (50)
7 2did_A Tripartite motif protei 90.9 0.15 5.1E-06 36.3 2.8 43 61-110 8-51 (53)
8 2ffw_A Midline-1; B-BOX, ring 89.6 0.09 3.1E-06 41.0 0.8 43 62-104 31-76 (78)
9 3ddt_A E3 ubiquitin-protein li 88.6 0.16 5.4E-06 35.5 1.4 41 61-107 6-47 (48)
10 2dja_A Midline-2; tripartite m 86.7 0.3 1E-05 37.7 2.1 48 58-111 15-63 (84)
11 1fre_A Nuclear factor XNF7; zi 85.9 0.42 1.4E-05 32.2 2.3 29 63-92 5-34 (42)
12 2yrg_A Tripartite motif-contai 85.4 0.42 1.4E-05 35.0 2.3 44 60-110 13-57 (59)
13 2ffw_A Midline-1; B-BOX, ring 74.8 2.6 9E-05 32.5 3.7 41 19-59 28-74 (78)
14 2csv_A Tripartite motif protei 72.8 1.2 4.2E-05 33.4 1.3 42 61-109 18-59 (72)
15 2d8v_A Zinc finger FYVE domain 69.7 1.9 6.4E-05 33.1 1.7 48 59-108 6-54 (67)
16 2egm_A Tripartite motif-contai 66.6 0.89 3E-05 33.0 -0.7 30 62-92 19-49 (57)
17 4g92_A HAPB protein; transcrip 64.1 9.1 0.00031 29.1 4.4 28 317-344 35-63 (64)
18 2lri_C Autoimmune regulator; Z 63.9 3.1 0.00011 31.4 1.9 42 21-70 12-59 (66)
19 1f62_A Transcription factor WS 58.6 4.6 0.00016 28.3 1.9 42 23-69 2-49 (51)
20 2did_A Tripartite motif protei 56.8 8.5 0.00029 26.9 3.1 44 19-66 6-50 (53)
21 4hc9_A Trans-acting T-cell-spe 55.1 3.5 0.00012 34.5 0.8 70 21-90 5-89 (115)
22 2yrg_A Tripartite motif-contai 52.4 9.1 0.00031 27.7 2.7 43 19-65 12-55 (59)
23 2fc7_A ZZZ3 protein; structure 49.9 23 0.0008 27.6 4.9 45 63-107 23-74 (82)
24 1mm2_A MI2-beta; PHD, zinc fin 49.3 9.5 0.00032 27.9 2.4 42 21-70 9-56 (61)
25 2egm_A Tripartite motif-contai 49.0 10 0.00034 27.3 2.4 33 20-53 17-50 (57)
26 2jne_A Hypothetical protein YF 49.0 15 0.0005 30.3 3.6 59 20-91 31-91 (101)
27 1fre_A Nuclear factor XNF7; zi 44.3 7.7 0.00026 25.7 1.1 31 22-53 4-35 (42)
28 2dja_A Midline-2; tripartite m 44.2 19 0.00065 27.2 3.5 47 19-68 16-63 (84)
29 2yql_A PHD finger protein 21A; 41.8 12 0.00042 26.7 1.9 40 21-68 9-54 (56)
30 2k0a_A PRE-mRNA-splicing facto 41.1 4.9 0.00017 33.4 -0.4 42 43-88 31-79 (109)
31 4gne_A Histone-lysine N-methyl 35.9 27 0.00094 28.7 3.4 60 21-89 15-85 (107)
32 2yt5_A Metal-response element- 35.8 7.5 0.00026 28.5 -0.1 48 21-71 6-62 (66)
33 2yvr_A Transcription intermedi 35.7 24 0.00082 24.1 2.6 40 21-63 6-45 (50)
34 2e6r_A Jumonji/ARID domain-con 35.4 12 0.00041 29.7 1.1 34 16-54 10-44 (92)
35 2e5r_A Dystrobrevin alpha; ZZ 34.8 23 0.0008 26.2 2.5 43 57-101 9-55 (63)
36 2jrp_A Putative cytoplasmic pr 33.5 37 0.0013 26.8 3.6 58 21-91 2-61 (81)
37 2d8u_A Ubiquitin ligase TRIM63 32.9 21 0.0007 25.6 1.9 46 21-69 8-54 (64)
38 3shb_A E3 ubiquitin-protein li 32.6 21 0.00073 27.5 2.1 16 39-54 39-54 (77)
39 2l5u_A Chromodomain-helicase-D 32.4 17 0.0006 26.5 1.5 41 21-69 11-57 (61)
40 1fp0_A KAP-1 corepressor; PHD 31.6 21 0.00073 28.5 2.0 42 21-70 25-72 (88)
41 3o36_A Transcription intermedi 31.4 21 0.00071 31.2 2.1 42 22-71 5-52 (184)
42 1xwh_A Autoimmune regulator; P 31.4 16 0.00054 27.1 1.1 41 21-69 8-54 (66)
43 1z60_A TFIIH basal transcripti 30.1 13 0.00043 27.7 0.3 31 64-94 18-51 (59)
44 2puy_A PHD finger protein 21A; 28.6 24 0.00084 25.4 1.7 41 21-69 5-51 (60)
45 2ro1_A Transcription intermedi 27.8 23 0.00079 31.5 1.7 41 22-70 3-49 (189)
46 1v6g_A Actin binding LIM prote 26.9 8.3 0.00029 28.9 -1.2 59 33-91 3-73 (81)
47 2csv_A Tripartite motif protei 25.8 57 0.0019 24.0 3.4 45 19-67 16-60 (72)
48 2ysm_A Myeloid/lymphoid or mix 24.2 34 0.0012 27.4 2.0 63 21-93 7-81 (111)
49 3ask_A E3 ubiquitin-protein li 23.9 42 0.0014 31.2 2.7 16 39-54 187-202 (226)
50 1wj0_A Squamosa promoter-bindi 23.3 22 0.00076 26.6 0.6 43 46-89 10-52 (60)
51 3ddt_A E3 ubiquitin-protein li 23.2 48 0.0016 22.4 2.3 30 30-62 15-45 (48)
52 2yqq_A Zinc finger HIT domain- 22.6 34 0.0012 25.2 1.5 23 62-85 13-35 (56)
53 3u5n_A E3 ubiquitin-protein li 21.5 29 0.00098 31.0 1.1 41 22-70 8-54 (207)
54 2k16_A Transcription initiatio 21.2 32 0.0011 25.7 1.2 29 21-54 18-46 (75)
55 2e6s_A E3 ubiquitin-protein li 21.2 64 0.0022 24.7 2.9 16 39-54 39-54 (77)
56 2kwj_A Zinc finger protein DPF 20.6 31 0.0011 28.1 1.0 35 15-54 51-86 (114)
57 3qc1_A Immunoglobulin-binding 20.3 48 0.0017 30.8 2.4 20 298-317 173-192 (243)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.99 E-value=3.2e-06 Score=68.23 Aligned_cols=80 Identities=21% Similarity=0.427 Sum_probs=65.2
Q ss_pred CCCCccCC---CceeEEeecCCcccccccchhhhcc---ccCCcee----------eeeccccCcCceEEecCCcccccc
Q 017166 22 KPCDTCKA---AAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARV----------WMCEVCEQAPAAVTCKADAAALCV 85 (376)
Q Consensus 22 ~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~a---asRH~Rv----------~LCd~C~~apA~v~C~~D~a~LC~ 85 (376)
..|+.|.. .+|+.+|-.+.+.||..|...+|.. ..+|..+ .+|+.++..+..+||..|...+|.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC~ 83 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICA 83 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEECH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccch
Confidence 46999984 6899999999999999999998974 4577654 358888777899999999999999
Q ss_pred ccCc-CccCCCCCCCCcceeecc
Q 017166 86 TCDN-DIHSANPLARRHERLPIE 107 (376)
Q Consensus 86 ~CD~-~iH~aN~la~rH~Rvpv~ 107 (376)
.|.. ..|. .|..+||.
T Consensus 84 ~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 84 LCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp HHHHHTTTS------SSCBCCCC
T ss_pred hcCCCCCcC------CCCeecCC
Confidence 9986 5664 36666654
No 2
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.82 E-value=0.008 Score=48.08 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=37.8
Q ss_pred eeeccccC---cCceEEecCCccccccccCcCccCCCCCCCCccee
Q 017166 62 WMCEVCEQ---APAAVTCKADAAALCVTCDNDIHSANPLARRHERL 104 (376)
Q Consensus 62 ~LCd~C~~---apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rv 104 (376)
..|++|.. .+|..+|..|...||..|...+|..++.+.+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 46999984 57999999999999999999989888777889876
No 3
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=94.50 E-value=0.019 Score=34.74 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHhhccc.....
Q 017166 298 GIDREARVLRYREKRKNRK..... 316 (376)
Q Consensus 298 ~~~R~~~v~ry~eKr~~R~..... 316 (376)
+..|.+.|+||.||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 4579999999999999873
No 4
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=93.13 E-value=0.046 Score=40.23 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=39.6
Q ss_pred cCCceeeeeccccCcCceEEecCCccccccccCcC-ccCCCCCCCCcceeeccCCCC
Q 017166 56 NKHARVWMCEVCEQAPAAVTCKADAAALCVTCDND-IHSANPLARRHERLPIEPFFD 111 (376)
Q Consensus 56 sRH~Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~~-iH~aN~la~rH~Rvpv~~~~~ 111 (376)
.+..+..+|..+...+-.+||..|...+|..|... -|. .|..+||...+.
T Consensus 3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~ 53 (64)
T 2d8u_A 3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQ 53 (64)
T ss_dssp CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCS
T ss_pred CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHH
Confidence 35566678999977889999999999999999764 553 588888876654
No 5
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=92.07 E-value=0.045 Score=33.53 Aligned_cols=19 Identities=47% Similarity=0.630 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhcccCCC
Q 017166 301 REARVLRYREKRKNRKFEK 319 (376)
Q Consensus 301 R~~~v~ry~eKr~~R~f~k 319 (376)
|.+.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5678999999999987654
No 6
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=91.94 E-value=0.061 Score=37.82 Aligned_cols=46 Identities=22% Similarity=0.450 Sum_probs=36.8
Q ss_pred CceeeeeccccCcCceEEecCCccccccccCcCccCCCCCCCCcceeeccCC
Q 017166 58 HARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF 109 (376)
Q Consensus 58 H~Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rvpv~~~ 109 (376)
..|..+|..+...+-.+||..|...+|..|...-|. .|..+||...
T Consensus 3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ea 48 (50)
T 2yvr_A 3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLEDA 48 (50)
T ss_dssp CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC-
T ss_pred CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHHH
Confidence 356678999977789999999999999999876553 5888888754
No 7
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=90.88 E-value=0.15 Score=36.30 Aligned_cols=43 Identities=23% Similarity=0.491 Sum_probs=34.7
Q ss_pred eeeeccccCcCceEEecCCccccccccCc-CccCCCCCCCCcceeeccCCC
Q 017166 61 VWMCEVCEQAPAAVTCKADAAALCVTCDN-DIHSANPLARRHERLPIEPFF 110 (376)
Q Consensus 61 v~LCd~C~~apA~v~C~~D~a~LC~~CD~-~iH~aN~la~rH~Rvpv~~~~ 110 (376)
..+|..+. .+-.+||..|...+|..|.. .-| +.|..+||...+
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~ 51 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGPS 51 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCTT
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHHh
Confidence 45798887 77899999999999999987 445 358888887654
No 8
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=89.61 E-value=0.09 Score=40.96 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=35.9
Q ss_pred eeeccccC---cCceEEecCCccccccccCcCccCCCCCCCCccee
Q 017166 62 WMCEVCEQ---APAAVTCKADAAALCVTCDNDIHSANPLARRHERL 104 (376)
Q Consensus 62 ~LCd~C~~---apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rv 104 (376)
.+|+.|.. .+|...|..|.+.+|..|-...|...+...+|+.+
T Consensus 31 v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 31 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred ccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 56999975 56899999999999999988778777777888654
No 9
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=88.59 E-value=0.16 Score=35.46 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=31.8
Q ss_pred eeeeccccCcCceEEecCCccccccccC-cCccCCCCCCCCcceeecc
Q 017166 61 VWMCEVCEQAPAAVTCKADAAALCVTCD-NDIHSANPLARRHERLPIE 107 (376)
Q Consensus 61 v~LCd~C~~apA~v~C~~D~a~LC~~CD-~~iH~aN~la~rH~Rvpv~ 107 (376)
..+|..+...+..+||..|...+|..|. ..-|. .|..+||.
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence 3568888767789999999999999997 44564 47667764
No 10
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=86.70 E-value=0.3 Score=37.73 Aligned_cols=48 Identities=25% Similarity=0.487 Sum_probs=37.3
Q ss_pred CceeeeeccccCcCceEEecCCccccccccCc-CccCCCCCCCCcceeeccCCCC
Q 017166 58 HARVWMCEVCEQAPAAVTCKADAAALCVTCDN-DIHSANPLARRHERLPIEPFFD 111 (376)
Q Consensus 58 H~Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~-~iH~aN~la~rH~Rvpv~~~~~ 111 (376)
..+..+|+.++..+-.+||..|...+|..|.. .-| ..|.-+||.....
T Consensus 15 ~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~~ 63 (84)
T 2dja_A 15 HLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFE 63 (84)
T ss_dssp CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCC
T ss_pred CCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHHHH
Confidence 34455788887778999999999999999987 445 3577777776654
No 11
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=85.89 E-value=0.42 Score=32.19 Aligned_cols=29 Identities=28% Similarity=0.595 Sum_probs=24.5
Q ss_pred eeccccCcCceEEecCCccccccccCc-Ccc
Q 017166 63 MCEVCEQAPAAVTCKADAAALCVTCDN-DIH 92 (376)
Q Consensus 63 LCd~C~~apA~v~C~~D~a~LC~~CD~-~iH 92 (376)
+|..++ .+-.+||..|...+|..|.. .-|
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 688886 67899999999999999987 445
No 12
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.45 E-value=0.42 Score=34.96 Aligned_cols=44 Identities=23% Similarity=0.467 Sum_probs=34.2
Q ss_pred eeeeeccccCcCceEEecCCccccccccCc-CccCCCCCCCCcceeeccCCC
Q 017166 60 RVWMCEVCEQAPAAVTCKADAAALCVTCDN-DIHSANPLARRHERLPIEPFF 110 (376)
Q Consensus 60 Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~-~iH~aN~la~rH~Rvpv~~~~ 110 (376)
+..+|..+. .+-.+||..|...+|..|.. .-| +.|..+||....
T Consensus 13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea~ 57 (59)
T 2yrg_A 13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGPS 57 (59)
T ss_dssp CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSSC
T ss_pred cCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHHh
Confidence 345788887 57899999999999999987 444 358888887654
No 13
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=74.78 E-value=2.6 Score=32.48 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=32.4
Q ss_pred cCCCCCCccCC---CceeEEeecCCcccccccchhhhcc---ccCCc
Q 017166 19 VAAKPCDTCKA---AAAAVFCRVDSAFLCLNCDLRIHNC---MNKHA 59 (376)
Q Consensus 19 ~~~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~a---asRH~ 59 (376)
-....||+|.. .+|+-.|-...+.||..|=...|.. ..+|.
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~ 74 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHR 74 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCC
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCc
Confidence 34678999975 6899999999999999996656865 44664
No 14
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=72.80 E-value=1.2 Score=33.39 Aligned_cols=42 Identities=21% Similarity=0.484 Sum_probs=33.4
Q ss_pred eeeeccccCcCceEEecCCccccccccCcCccCCCCCCCCcceeeccCC
Q 017166 61 VWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF 109 (376)
Q Consensus 61 v~LCd~C~~apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rvpv~~~ 109 (376)
..+|..+. .+-.+||..|...+|..|...-|. .|..+||...
T Consensus 18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ea 59 (72)
T 2csv_A 18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEA 59 (72)
T ss_dssp CCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHH
T ss_pred cCcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHHHH
Confidence 35799885 789999999999999999875553 5777777654
No 15
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=69.70 E-value=1.9 Score=33.15 Aligned_cols=48 Identities=23% Similarity=0.521 Sum_probs=39.2
Q ss_pred ceeeeeccccCcCceEEecCC-ccccccccCcCccCCCCCCCCcceeeccC
Q 017166 59 ARVWMCEVCEQAPAAVTCKAD-AAALCVTCDNDIHSANPLARRHERLPIEP 108 (376)
Q Consensus 59 ~Rv~LCd~C~~apA~v~C~~D-~a~LC~~CD~~iH~aN~la~rH~Rvpv~~ 108 (376)
+-.+.|-+|... |.++|..| .-..|..|-...|. ..--+.|+.++...
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~ 54 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHP 54 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCC
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccC
Confidence 445779999976 99999998 67999999999995 45567898888744
No 16
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.61 E-value=0.89 Score=33.02 Aligned_cols=30 Identities=27% Similarity=0.668 Sum_probs=24.0
Q ss_pred eeeccccCcCceEEecCCccccccccCc-Ccc
Q 017166 62 WMCEVCEQAPAAVTCKADAAALCVTCDN-DIH 92 (376)
Q Consensus 62 ~LCd~C~~apA~v~C~~D~a~LC~~CD~-~iH 92 (376)
.+|..+. .+-.+||..|...+|..|.. .-|
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence 3688885 67889999999999999976 344
No 17
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=64.07 E-value=9.1 Score=29.12 Aligned_cols=28 Identities=36% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCCcccccchhhhhhhCCC-CCceeecCC
Q 017166 317 FEKTIRYHSRKAYAETRPR-IKGRFAKRA 344 (376)
Q Consensus 317 f~k~irY~~Rk~~A~~RpR-vkGrF~k~~ 344 (376)
-.|+.-++||-..|-.|+| -.|||.+..
T Consensus 35 ~rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 35 GRKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp SCCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred cccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 3466789999999999999 789998865
No 18
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=63.93 E-value=3.1 Score=31.39 Aligned_cols=42 Identities=17% Similarity=0.460 Sum_probs=30.0
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhcc------ccCCceeeeeccccCc
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC------MNKHARVWMCEVCEQA 70 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a------asRH~Rv~LCd~C~~a 70 (376)
...|..|+. .+...+|..|+...|.. ...-...|.|..|...
T Consensus 12 ~~~C~vC~~--------~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGD--------GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSC--------CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCC--------CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 455999985 35578888999999987 2333456788888643
No 19
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=58.60 E-value=4.6 Score=28.27 Aligned_cols=42 Identities=24% Similarity=0.680 Sum_probs=28.1
Q ss_pred CCCccCCCceeEEeecCCcccccccchhhhcc------ccCCceeeeeccccC
Q 017166 23 PCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC------MNKHARVWMCEVCEQ 69 (376)
Q Consensus 23 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a------asRH~Rv~LCd~C~~ 69 (376)
.|..|+... ..+.--+|..|+...|.. .......|.|..|..
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888542 234677899999999987 222334577777764
No 20
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=56.83 E-value=8.5 Score=26.87 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=32.4
Q ss_pred cCCCCCCccCCCceeEEeecCCcccccccch-hhhccccCCceeeeecc
Q 017166 19 VAAKPCDTCKAAAAAVFCRVDSAFLCLNCDL-RIHNCMNKHARVWMCEV 66 (376)
Q Consensus 19 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aasRH~Rv~LCd~ 66 (376)
+..+.|..=. .+-.+||..|...+|..|-. .-|. .|..++|-++
T Consensus 6 ~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~---~H~~~~l~ea 50 (53)
T 2did_A 6 SGESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR---AHTVVPLSGP 50 (53)
T ss_dssp CSCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT---TSCEEECCCT
T ss_pred cCCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC---CCcEeeHHHH
Confidence 3456788877 68899999999999999975 4554 3666665443
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=55.07 E-value=3.5 Score=34.52 Aligned_cols=70 Identities=19% Similarity=0.537 Sum_probs=47.6
Q ss_pred CCCCCccCCCceeEEeecCC-cccccccch--hhhcc----ccCCce-------eeeeccccCcCceEEecC-Ccccccc
Q 017166 21 AKPCDTCKAAAAAVFCRVDS-AFLCLNCDL--RIHNC----MNKHAR-------VWMCEVCEQAPAAVTCKA-DAAALCV 85 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~-A~LC~~CD~--~vH~a----asRH~R-------v~LCd~C~~apA~v~C~~-D~a~LC~ 85 (376)
.+.|..|+....-+|=+.+. -+||..|.. ++|.. .....| ...|..|......+|-.. +...||.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lCN 84 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCN 84 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEECH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcch
Confidence 67899999888888888765 489999994 45554 111111 235999987776555543 4468999
Q ss_pred ccCcC
Q 017166 86 TCDND 90 (376)
Q Consensus 86 ~CD~~ 90 (376)
.|-.-
T Consensus 85 aCgl~ 89 (115)
T 4hc9_A 85 ACGLY 89 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99653
No 22
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.37 E-value=9.1 Score=27.67 Aligned_cols=43 Identities=19% Similarity=0.416 Sum_probs=31.3
Q ss_pred cCCCCCCccCCCceeEEeecCCcccccccch-hhhccccCCceeeeec
Q 017166 19 VAAKPCDTCKAAAAAVFCRVDSAFLCLNCDL-RIHNCMNKHARVWMCE 65 (376)
Q Consensus 19 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aasRH~Rv~LCd 65 (376)
+..+.|..-. .+-.+||..|...+|..|-. .-|. .|..++|-+
T Consensus 12 ~~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~---~H~~~~l~e 55 (59)
T 2yrg_A 12 QKVDHCARHG-EKLLLFCQEDGKVICWLCERSQEHR---GHHTFPTSG 55 (59)
T ss_dssp CCSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT---TCCEEECCS
T ss_pred hcCccChhhC-ceeeeecCCCCcEEecccCCCCcCC---CCcEeeHHH
Confidence 3456788776 57889999999999999975 4454 365555543
No 23
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=49.92 E-value=23 Score=27.65 Aligned_cols=45 Identities=22% Similarity=0.557 Sum_probs=30.9
Q ss_pred eeccccCcC---ceEEecCCcc----ccccccCcCccCCCCCCCCcceeecc
Q 017166 63 MCEVCEQAP---AAVTCKADAA----ALCVTCDNDIHSANPLARRHERLPIE 107 (376)
Q Consensus 63 LCd~C~~ap---A~v~C~~D~a----~LC~~CD~~iH~aN~la~rH~Rvpv~ 107 (376)
.|+.|...| ..+.|..|.- -||..|....+..+.--..|.-++|.
T Consensus 23 ~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~ 74 (82)
T 2fc7_A 23 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIY 74 (82)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEEC
T ss_pred CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEee
Confidence 699998766 4588998865 69999988765433333456555544
No 24
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=49.31 E-value=9.5 Score=27.94 Aligned_cols=42 Identities=24% Similarity=0.570 Sum_probs=28.4
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhcc-cc-----CCceeeeeccccCc
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC-MN-----KHARVWMCEVCEQA 70 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a-as-----RH~Rv~LCd~C~~a 70 (376)
...|..|+. .+.-.+|..|+...|.. .. .-.-.|.|..|...
T Consensus 9 ~~~C~vC~~--------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKD--------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCC--------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCC--------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456999985 35678899999999987 11 22234667777654
No 25
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.98 E-value=10 Score=27.30 Aligned_cols=33 Identities=30% Similarity=0.671 Sum_probs=26.7
Q ss_pred CCCCCCccCCCceeEEeecCCcccccccch-hhhc
Q 017166 20 AAKPCDTCKAAAAAVFCRVDSAFLCLNCDL-RIHN 53 (376)
Q Consensus 20 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~ 53 (376)
..+.|..-. ..-.+||..|...+|..|-. .-|.
T Consensus 17 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 17 DQGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp TTSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred ccCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 355688875 68899999999999999975 4554
No 26
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=48.96 E-value=15 Score=30.28 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCCCCccCCCceeEEeecCCcccccccchhhhccccCCceeeeeccccCcCceEEecCCc--cccccccCcCc
Q 017166 20 AAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADA--AALCVTCDNDI 91 (376)
Q Consensus 20 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aasRH~Rv~LCd~C~~apA~v~C~~D~--a~LC~~CD~~i 91 (376)
|...|..|+.. ..| .+..+.|..|+..+ .+..+|+-|+..--.+ ++|. -.+|..|..-|
T Consensus 31 M~~~CP~Cq~e--L~~--~g~~~hC~~C~~~f-------~~~a~CPdC~q~LevL--kACGAvdYFC~~chgLi 91 (101)
T 2jne_A 31 MELHCPQCQHV--LDQ--DNGHARCRSCGEFI-------EMKALCPDCHQPLQVL--KACGAVDYFCQHGHGLI 91 (101)
T ss_dssp CCCBCSSSCSB--EEE--ETTEEEETTTCCEE-------EEEEECTTTCSBCEEE--EETTEEEEEETTTTEEE
T ss_pred ccccCccCCCc--cee--cCCEEECccccchh-------hccccCcchhhHHHHH--HHhcCcchhhccCCcee
Confidence 67899999954 333 34556699999865 6778899998643322 3443 36777774433
No 27
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=44.30 E-value=7.7 Score=25.70 Aligned_cols=31 Identities=19% Similarity=0.564 Sum_probs=24.0
Q ss_pred CCCCccCCCceeEEeecCCcccccccch-hhhc
Q 017166 22 KPCDTCKAAAAAVFCRVDSAFLCLNCDL-RIHN 53 (376)
Q Consensus 22 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~ 53 (376)
+.|..=+ .+-.+||..|...+|..|-. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 4576665 57889999999999999975 3443
No 28
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=44.24 E-value=19 Score=27.24 Aligned_cols=47 Identities=19% Similarity=0.448 Sum_probs=34.1
Q ss_pred cCCCCCCccCCCceeEEeecCCcccccccch-hhhccccCCceeeeecccc
Q 017166 19 VAAKPCDTCKAAAAAVFCRVDSAFLCLNCDL-RIHNCMNKHARVWMCEVCE 68 (376)
Q Consensus 19 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aasRH~Rv~LCd~C~ 68 (376)
+....|..=...+-.+||..|...+|..|-. .-|. .|.-++|-++..
T Consensus 16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~---~H~~~~l~ea~~ 63 (84)
T 2dja_A 16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR---DHQVASLNDRFE 63 (84)
T ss_dssp SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT---TCCBCCCCSSCC
T ss_pred CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC---CCCccCHHHHHH
Confidence 3455788875577899999999999999975 4554 366666655544
No 29
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.79 E-value=12 Score=26.71 Aligned_cols=40 Identities=20% Similarity=0.680 Sum_probs=27.4
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhcc-c-----cCCceeeeecccc
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC-M-----NKHARVWMCEVCE 68 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a-a-----sRH~Rv~LCd~C~ 68 (376)
...|..|+.. +.-.+|..|+...|.. . ......|.|..|.
T Consensus 9 ~~~C~vC~~~--------g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 9 EDFCSVCRKS--------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCSCSSSCCS--------SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCccCCCC--------CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 5669999964 4677888999999987 1 1223356676664
No 30
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=41.08 E-value=4.9 Score=33.43 Aligned_cols=42 Identities=29% Similarity=0.562 Sum_probs=24.6
Q ss_pred cccccchhhhccccCCceeeeeccccCcCceEEecCCc-------cccccccC
Q 017166 43 LCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADA-------AALCVTCD 88 (376)
Q Consensus 43 LC~~CD~~vH~aasRH~Rv~LCd~C~~apA~v~C~~D~-------a~LC~~CD 88 (376)
-|.-||..|+- ...|.+|+.|....-.-.|-.|. |..|..|-
T Consensus 31 kC~iCDs~Vrp----~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 31 KCPICDSYVRP----KRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp CCTTTCCCCCC----CEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred cccccCCccCC----cceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhh
Confidence 47777776654 35667888887544433443333 55566664
No 31
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=35.87 E-value=27 Score=28.66 Aligned_cols=60 Identities=18% Similarity=0.485 Sum_probs=39.9
Q ss_pred CCCCCccCCCceeEEeecCCccccc--ccchhhhcc-c---cCCceeeeec-----cccCcCceEEecCCccccccccCc
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCL--NCDLRIHNC-M---NKHARVWMCE-----VCEQAPAAVTCKADAAALCVTCDN 89 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~--~CD~~vH~a-a---sRH~Rv~LCd-----~C~~apA~v~C~~D~a~LC~~CD~ 89 (376)
...|..|+.. ....+|. .|+.-.|.. . ....-.|.|. .|+. ++.++|..|..++|..|-.
T Consensus 15 ~~~C~~C~~~--------G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k-~~~~~C~~Cp~sfC~~c~~ 85 (107)
T 4gne_A 15 EDYCFQCGDG--------GELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSS-AAVSFCEFCPHSFCKDHEK 85 (107)
T ss_dssp CSSCTTTCCC--------SEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCS-BCCEECSSSSCEECTTTCT
T ss_pred CCCCCcCCCC--------CcEeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCC-CCCcCcCCCCcchhhhccC
Confidence 5569999853 3355666 788888877 2 1222346554 5554 4668899998888888854
No 32
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=35.79 E-value=7.5 Score=28.48 Aligned_cols=48 Identities=19% Similarity=0.552 Sum_probs=30.5
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhcc-cc----C----CceeeeeccccCcC
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC-MN----K----HARVWMCEVCEQAP 71 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a-as----R----H~Rv~LCd~C~~ap 71 (376)
...|..|+..... ..+...+|..||...|.. .. . ..-.|+|..|....
T Consensus 6 ~~~C~vC~~~~~~---~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 6 SGVCTICQEEYSE---APNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCBSSSCCCCCB---TTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCC---CCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4569999864211 124567788999999988 11 1 23457888886543
No 33
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=35.70 E-value=24 Score=24.10 Aligned_cols=40 Identities=23% Similarity=0.598 Sum_probs=29.3
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhccccCCceeee
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWM 63 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aasRH~Rv~L 63 (376)
...|..=...+-.+||..|...+|..|-..-|. .|.-++|
T Consensus 6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~---~H~~~~l 45 (50)
T 2yvr_A 6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK---DHQYQFL 45 (50)
T ss_dssp SCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT---TCCEEET
T ss_pred CCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC---CCceecH
Confidence 445777755678999999999999999664443 3555544
No 34
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.37 E-value=12 Score=29.71 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=23.7
Q ss_pred Cccc-CCCCCCccCCCceeEEeecCCcccccccchhhhcc
Q 017166 16 GWSV-AAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC 54 (376)
Q Consensus 16 ~w~~-~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a 54 (376)
.|.- ....|..|+... ..+.-.+|..|+...|..
T Consensus 10 ~~~~~~~~~C~vC~~~~-----~~~~ll~CD~C~~~~H~~ 44 (92)
T 2e6r_A 10 SAQFIDSYICQVCSRGD-----EDDKLLFCDGCDDNYHIF 44 (92)
T ss_dssp CCCCCCCCCCSSSCCSG-----GGGGCEECTTTCCEECSS
T ss_pred hhhccCCCCCccCCCcC-----CCCCEEEcCCCCchhccc
Confidence 3543 355799998643 134577888999999887
No 35
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.81 E-value=23 Score=26.24 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=29.4
Q ss_pred CCceeeeeccccCcC---ceEEecCCc-cccccccCcCccCCCCCCCCc
Q 017166 57 KHARVWMCEVCEQAP---AAVTCKADA-AALCVTCDNDIHSANPLARRH 101 (376)
Q Consensus 57 RH~Rv~LCd~C~~ap---A~v~C~~D~-a~LC~~CD~~iH~aN~la~rH 101 (376)
.|. ..|+.|...| ..+.|..|. --||..|-......+.--..|
T Consensus 9 ~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H 55 (63)
T 2e5r_A 9 FHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQH 55 (63)
T ss_dssp CSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTC
T ss_pred eeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCC
Confidence 455 5799999776 468898874 569999988764333323345
No 36
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.55 E-value=37 Score=26.83 Aligned_cols=58 Identities=22% Similarity=0.382 Sum_probs=36.1
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhccccCCceeeeeccccCcCceEEecCCc--cccccccCcCc
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADA--AALCVTCDNDI 91 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aasRH~Rv~LCd~C~~apA~v~C~~D~--a~LC~~CD~~i 91 (376)
...|-.|...... ...-+.|..|+..+ .+..+|+-|+.. ..+ |.+|. ..+|..|..-|
T Consensus 2 ~~~CP~C~~~l~~----~~~~~~C~~C~~~~-------~~~afCPeCgq~-Le~-lkACGA~~yFC~~C~~Li 61 (81)
T 2jrp_A 2 EITCPVCHHALER----NGDTAHCETCAKDF-------SLQALCPDCRQP-LQV-LKACGAVDYFCQNGHGLI 61 (81)
T ss_dssp CCCCSSSCSCCEE----CSSEEECTTTCCEE-------EEEEECSSSCSC-CCE-EEETTEEEECCTTTTCCC
T ss_pred CCCCCCCCCcccc----CCCceECccccccC-------CCcccCcchhhH-HHH-HHhcCCcCeeeccCCCEe
Confidence 3568888855432 23355588888765 455578888853 333 55653 57888885544
No 37
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=32.86 E-value=21 Score=25.60 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=33.3
Q ss_pred CCCCCccCCCceeEEeecCCcccccccch-hhhccccCCceeeeeccccC
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDL-RIHNCMNKHARVWMCEVCEQ 69 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aasRH~Rv~LCd~C~~ 69 (376)
...|..=...+-.+||..|...+|..|-. .-|. .|.-++|-++...
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~---~H~~~~l~~a~~~ 54 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK---ACEVAPLQSVFQG 54 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT---SSCEECTTTCCSS
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcCC---CCCeeCHHHHHHH
Confidence 44577775567899999999999999964 3554 3666666555543
No 38
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=32.58 E-value=21 Score=27.54 Aligned_cols=16 Identities=31% Similarity=0.831 Sum_probs=10.6
Q ss_pred CCcccccccchhhhcc
Q 017166 39 DSAFLCLNCDLRIHNC 54 (376)
Q Consensus 39 D~A~LC~~CD~~vH~a 54 (376)
+...+|..||...|..
T Consensus 39 ~~ll~CD~C~~~yH~~ 54 (77)
T 3shb_A 39 DKQLMCDECDMAFHIY 54 (77)
T ss_dssp GGEEECTTTCCEEETT
T ss_pred cceeEeCCCCCccCcc
Confidence 4456677777777765
No 39
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=32.38 E-value=17 Score=26.47 Aligned_cols=41 Identities=24% Similarity=0.661 Sum_probs=28.2
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhcc------ccCCceeeeeccccC
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC------MNKHARVWMCEVCEQ 69 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a------asRH~Rv~LCd~C~~ 69 (376)
...|..|+.. +.-.+|..|+...|.. ...-...|.|..|..
T Consensus 11 ~~~C~vC~~~--------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQG--------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCC--------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCccCCCC--------CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 5679999863 4567788999999987 122334567777754
No 40
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.62 E-value=21 Score=28.45 Aligned_cols=42 Identities=21% Similarity=0.658 Sum_probs=27.5
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhcc-c-----cCCceeeeeccccCc
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC-M-----NKHARVWMCEVCEQA 70 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a-a-----sRH~Rv~LCd~C~~a 70 (376)
...|..|+.. +.-.+|..|+...|.. . ..-.-.|.|..|...
T Consensus 25 ~~~C~vC~~~--------g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQKP--------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCSS--------SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCcCcCcCCC--------CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 5579999964 3466788999999987 1 223334566666543
No 41
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=31.41 E-value=21 Score=31.24 Aligned_cols=42 Identities=19% Similarity=0.580 Sum_probs=27.8
Q ss_pred CCCCccCCCceeEEeecCCcccccccchhhhcc-c----c-CCceeeeeccccCcC
Q 017166 22 KPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC-M----N-KHARVWMCEVCEQAP 71 (376)
Q Consensus 22 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a-a----s-RH~Rv~LCd~C~~ap 71 (376)
..|..|+.. +...+|..|+...|.. . . ...-.|.|..|....
T Consensus 5 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQNG--------GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCCC--------SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CccccCCCC--------CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 349999853 4467788899988876 1 1 223357788887543
No 42
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=31.41 E-value=16 Score=27.07 Aligned_cols=41 Identities=22% Similarity=0.649 Sum_probs=26.8
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhcc-c-----cCCceeeeeccccC
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC-M-----NKHARVWMCEVCEQ 69 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a-a-----sRH~Rv~LCd~C~~ 69 (376)
...|..|+.. ..-.+|..|+...|.. . ....-.|.|..|..
T Consensus 8 ~~~C~vC~~~--------g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 8 EDECAVCRDG--------GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCSBSSSSCC--------SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCccCCCC--------CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4569999964 4567788999999987 1 12223456666643
No 43
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=30.09 E-value=13 Score=27.73 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=22.5
Q ss_pred eccccCcC---ceEEecCCccccccccCcCccCC
Q 017166 64 CEVCEQAP---AAVTCKADAAALCVTCDNDIHSA 94 (376)
Q Consensus 64 Cd~C~~ap---A~v~C~~D~a~LC~~CD~~iH~a 94 (376)
|-.|...- ..+.|..|.-.+|.+||.=||..
T Consensus 18 C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 18 CYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp ETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred ccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 55554322 24679999999999999999863
No 44
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=28.59 E-value=24 Score=25.39 Aligned_cols=41 Identities=20% Similarity=0.671 Sum_probs=27.7
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhcc-c-----cCCceeeeeccccC
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC-M-----NKHARVWMCEVCEQ 69 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a-a-----sRH~Rv~LCd~C~~ 69 (376)
...|..|+.. +.--+|..|+...|.. . ......|.|..|..
T Consensus 5 ~~~C~vC~~~--------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 5 EDFCSVCRKS--------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CSSCTTTCCC--------SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCcCCCCC--------CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4569999964 4567788999988987 1 12233567777753
No 45
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=27.79 E-value=23 Score=31.46 Aligned_cols=41 Identities=20% Similarity=0.655 Sum_probs=27.1
Q ss_pred CCCCccCCCceeEEeecCCcccccccchhhhcc-c-----cCCceeeeeccccCc
Q 017166 22 KPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC-M-----NKHARVWMCEVCEQA 70 (376)
Q Consensus 22 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a-a-----sRH~Rv~LCd~C~~a 70 (376)
..|..|+.. +.-.+|..|+...|.. . ....-.|.|..|...
T Consensus 3 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP--------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC--------SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC--------CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 348899843 4577799999999987 2 122234667777654
No 46
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.89 E-value=8.3 Score=28.86 Aligned_cols=59 Identities=19% Similarity=0.402 Sum_probs=32.0
Q ss_pred eEEeecCC----cccccccchhhhcc------ccCCceeeeeccccCcC--ceEEecCCccccccccCcCc
Q 017166 33 AVFCRVDS----AFLCLNCDLRIHNC------MNKHARVWMCEVCEQAP--AAVTCKADAAALCVTCDNDI 91 (376)
Q Consensus 33 ~vyC~aD~----A~LC~~CD~~vH~a------asRH~Rv~LCd~C~~ap--A~v~C~~D~a~LC~~CD~~i 91 (376)
.+||..|= +..|..|+..|-.. ..-|..-..|..|...- ...+-..+...+|..|...+
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCcchHHHHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 35777762 45788888877632 12344444577776542 22333333345677775443
No 47
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=25.80 E-value=57 Score=23.97 Aligned_cols=45 Identities=24% Similarity=0.545 Sum_probs=32.9
Q ss_pred cCCCCCCccCCCceeEEeecCCcccccccchhhhccccCCceeeeeccc
Q 017166 19 VAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVC 67 (376)
Q Consensus 19 ~~~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aasRH~Rv~LCd~C 67 (376)
+..+.|..=. .+-.+||..|...+|..|-..-|. .|.-++|-+..
T Consensus 16 ~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~---~H~~~~l~ea~ 60 (72)
T 2csv_A 16 FEARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK---NHSTVTVEEAK 60 (72)
T ss_dssp SSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS---SSCEEEHHHHH
T ss_pred cccCcCcccC-CceEEEeCCCCeEEccccCCCCCC---CCCEecHHHHH
Confidence 4456788875 788999999999999999654443 46666654443
No 48
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=24.22 E-value=34 Score=27.39 Aligned_cols=63 Identities=24% Similarity=0.623 Sum_probs=37.5
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhcc----ccCC--ceeeeecccc------CcCceEEecCCccccccccC
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC----MNKH--ARVWMCEVCE------QAPAAVTCKADAAALCVTCD 88 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a----asRH--~Rv~LCd~C~------~apA~v~C~~D~a~LC~~CD 88 (376)
...|..|+..--. +.-.+|..|....|.. .... .-.|.|..|. .... ...+.+|..|+
T Consensus 7 ~~~C~~C~~~g~~-----~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~-----~~~ll~Cd~C~ 76 (111)
T 2ysm_A 7 GANCAVCDSPGDL-----LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGE-----DSKMLVCDTCD 76 (111)
T ss_dssp CSCBTTTCCCCCT-----TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSC-----CTTEEECSSSC
T ss_pred CCCCcCCCCCCCC-----cCCeECCCCCCCcChHHhCCccccccccCccCCcCCcccccCccCC-----CCCeeECCCCC
Confidence 5569999864210 2236788999999987 1111 1246655553 2110 23478888888
Q ss_pred cCccC
Q 017166 89 NDIHS 93 (376)
Q Consensus 89 ~~iH~ 93 (376)
..-|-
T Consensus 77 ~~yH~ 81 (111)
T 2ysm_A 77 KGYHT 81 (111)
T ss_dssp CEEEG
T ss_pred cHHhH
Confidence 87774
No 49
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=23.93 E-value=42 Score=31.18 Aligned_cols=16 Identities=31% Similarity=0.831 Sum_probs=8.7
Q ss_pred CCcccccccchhhhcc
Q 017166 39 DSAFLCLNCDLRIHNC 54 (376)
Q Consensus 39 D~A~LC~~CD~~vH~a 54 (376)
+.--+|..||...|..
T Consensus 187 ~~lL~CD~C~~~yH~~ 202 (226)
T 3ask_A 187 DKQLMCDECDMAFHIY 202 (226)
T ss_dssp -CCEECSSSCCEECSC
T ss_pred CCeEEcCCCCcceeCc
Confidence 3445566666666654
No 50
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=23.31 E-value=22 Score=26.56 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=33.4
Q ss_pred ccchhhhccccCCceeeeeccccCcCceEEecCCccccccccCc
Q 017166 46 NCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDN 89 (376)
Q Consensus 46 ~CD~~vH~aasRH~Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~ 89 (376)
+|++.+-.+-.-|.|-.+|+.|-.+|..+. .+-..-+|+.|-.
T Consensus 10 gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~-~G~~~RFCQQCsr 52 (60)
T 1wj0_A 10 NCGADLSKVKDYHRRHKVCEIHSKATTALV-GGIMQRFCQQCSR 52 (60)
T ss_dssp TCCCEETSCCSSTTTTTCCHHHHTCSCEEE-TTEEECCCSSSCS
T ss_pred CCCcChhHhHHHhhccccChhHcCCCEEEE-CCEEEehhhhccC
Confidence 587777666556777789999999888776 6667889999944
No 51
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=23.15 E-value=48 Score=22.41 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=22.2
Q ss_pred CceeEEeecCCcccccccc-hhhhccccCCceee
Q 017166 30 AAAAVFCRVDSAFLCLNCD-LRIHNCMNKHARVW 62 (376)
Q Consensus 30 ~~A~vyC~aD~A~LC~~CD-~~vH~aasRH~Rv~ 62 (376)
.+-.+||..|...+|..|- ..-|.. |.-++
T Consensus 15 e~l~lfC~~d~~~iC~~C~~~~~H~~---H~~~~ 45 (48)
T 3ddt_A 15 EKINIYCLTCEVPTCSMCKVFGIHKA---CEVAP 45 (48)
T ss_dssp SBCCEEETTTTEEECHHHHHHSTTTT---SCEEE
T ss_pred ccccEEcCCCCeeEcccccCCCcCCC---CcEEe
Confidence 5578999999999999995 335553 54443
No 52
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.57 E-value=34 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.587 Sum_probs=20.5
Q ss_pred eeeccccCcCceEEecCCcccccc
Q 017166 62 WMCEVCEQAPAAVTCKADAAALCV 85 (376)
Q Consensus 62 ~LCd~C~~apA~v~C~~D~a~LC~ 85 (376)
.+|.+|+. ++.+.|..|.+..|.
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESS
T ss_pred CccCcCcC-CCeeeCCCCCCCeeC
Confidence 36999999 999999999998886
No 53
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=21.53 E-value=29 Score=31.01 Aligned_cols=41 Identities=20% Similarity=0.590 Sum_probs=26.0
Q ss_pred CCCCccCCCceeEEeecCCcccccccchhhhcc-c-----cCCceeeeeccccCc
Q 017166 22 KPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC-M-----NKHARVWMCEVCEQA 70 (376)
Q Consensus 22 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a-a-----sRH~Rv~LCd~C~~a 70 (376)
..|..|+..- ..-+|..|+...|.. . ....-.|.|..|...
T Consensus 8 ~~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQNGG--------DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCCCE--------EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCC--------ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 3499998542 355688899888876 1 122234777777654
No 54
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=21.22 E-value=32 Score=25.66 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCCCCccCCCceeEEeecCCcccccccchhhhcc
Q 017166 21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC 54 (376)
Q Consensus 21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a 54 (376)
...|..|+... ..+..-+|..|+.-.|..
T Consensus 18 ~~~C~~C~~~~-----~~~~mi~CD~C~~wfH~~ 46 (75)
T 2k16_A 18 IWICPGCNKPD-----DGSPMIGCDDCDDWYHWP 46 (75)
T ss_dssp EECBTTTTBCC-----SSCCEEECSSSSSEEEHH
T ss_pred CcCCCCCCCCC-----CCCCEEEcCCCCcccccc
Confidence 45688888642 133467888999988987
No 55
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.19 E-value=64 Score=24.73 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=9.1
Q ss_pred CCcccccccchhhhcc
Q 017166 39 DSAFLCLNCDLRIHNC 54 (376)
Q Consensus 39 D~A~LC~~CD~~vH~a 54 (376)
+.-.+|..|+...|..
T Consensus 39 ~~ll~CD~C~~~yH~~ 54 (77)
T 2e6s_A 39 NMQLLCDECNVAYHIY 54 (77)
T ss_dssp TTEEECSSSCCEEETT
T ss_pred CCEEEcCCCCcccccc
Confidence 3445566666666655
No 56
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=20.56 E-value=31 Score=28.11 Aligned_cols=35 Identities=26% Similarity=0.582 Sum_probs=21.9
Q ss_pred CCcccCC-CCCCccCCCceeEEeecCCcccccccchhhhcc
Q 017166 15 GGWSVAA-KPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC 54 (376)
Q Consensus 15 ~~w~~~~-~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a 54 (376)
+.|.=.. ..|..|+... ..+...+|..||...|..
T Consensus 51 ~~W~C~~C~~C~~C~~~~-----~~~~ll~Cd~C~~~yH~~ 86 (114)
T 2kwj_A 51 YKWQCIECKSCILCGTSE-----NDDQLLFCDDCDRGYHMY 86 (114)
T ss_dssp TTCCCGGGCCCTTTTCCT-----TTTTEEECSSSCCEEETT
T ss_pred CccCccccCccCcccccC-----CCCceEEcCCCCcccccc
Confidence 4574221 2467776532 134577888999988887
No 57
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=20.25 E-value=48 Score=30.84 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHhhcccC
Q 017166 298 GIDREARVLRYREKRKNRKF 317 (376)
Q Consensus 298 ~~~R~~~v~ry~eKr~~R~f 317 (376)
...|+++|.|||++|.-+.-
T Consensus 173 a~rR~~KI~rfK~eKeLe~k 192 (243)
T 3qc1_A 173 ASQRQAKIERYKQKKEVEHR 192 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999866543
Done!