Query 017167
Match_columns 376
No_of_seqs 150 out of 1853
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 10:01:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 8E-09 2.7E-13 85.0 3.8 71 274-344 34-105 (137)
2 3b5d_A Multidrug transporter E 98.5 1.4E-07 4.7E-12 74.8 5.1 72 274-345 34-106 (110)
3 3b5d_A Multidrug transporter E 98.3 2.8E-06 9.7E-11 67.1 8.7 68 90-163 34-102 (110)
4 2i68_A Protein EMRE; transmemb 98.2 5.5E-07 1.9E-11 73.9 3.6 69 90-164 34-103 (137)
5 3b9w_A Ammonium transporter fa 10.5 9.9E+02 0.034 22.4 15.0 52 84-135 175-226 (407)
6 2hac_A T-cell surface glycopro 5.0 3.8E+02 0.013 15.5 1.7 17 124-140 14-30 (33)
7 2l2t_A Receptor tyrosine-prote 4.7 1.9E+02 0.0065 18.0 0.3 14 332-345 25-38 (44)
8 2ks1_B Epidermal growth factor 4.4 2.1E+02 0.007 17.9 0.3 10 335-344 29-38 (44)
9 1pw4_A Glycerol-3-phosphate tr 3.9 1.9E+03 0.063 19.2 15.2 37 26-63 95-132 (451)
10 3m73_A Tellurite resistance pr 3.3 2.1E+03 0.072 18.8 8.4 141 134-314 3-153 (314)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.69 E-value=8e-09 Score=84.96 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeeec-chhHHHHHHHHHHHHhCCccccccccchhhhhhhhhhccccc
Q 017167 274 YAGVVASGIAFAVQIWCIDRGGPVFVAVY-QPVQTLVVAIMASFALGEEFYLGGYVPATSPARSILLPNRWM 344 (376)
Q Consensus 274 ~~g~~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~l~l~e~~~~~~~iG~~lI~~gi~l~~~~~ 344 (376)
..+++++++++++|.+++++.+++++..+ ..+.|+++.+++++++||++++.+++|.++|++|+++.++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35666799999999999999999999998 899999999999999999999999999999999999987643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.47 E-value=1.4e-07 Score=74.77 Aligned_cols=72 Identities=8% Similarity=0.045 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeeec-chhHHHHHHHHHHHHhCCccccccccchhhhhhhhhhcccccc
Q 017167 274 YAGVVASGIAFAVQIWCIDRGGPVFVAVY-QPVQTLVVAIMASFALGEEFYLGGYVPATSPARSILLPNRWMS 345 (376)
Q Consensus 274 ~~g~~~~~~~~~l~~~al~~~~a~~~s~~-~~l~pv~a~l~~~l~l~e~~~~~~~iG~~lI~~gi~l~~~~~~ 345 (376)
..++++.++++.++.+++|+.+.+.+..+ ..+.|+.+.+.+++++||++++.+++|..+|+.|+++.++..+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~ 106 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 35556689999999999999999999888 8999999999999999999999999999999999999876543
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.28 E-value=2.8e-06 Score=67.12 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHhcccCCccceeec-ccchhHHHHHHHHHHhhccccccccCccceeehHhHHHHhHhhhh
Q 017167 90 LLALVGITANQGFYLLGLENTSPTFASAI-QNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVIT 163 (376)
Q Consensus 90 ~~g~~~~~~~~~~~~~al~~~~~~~a~ii-~~~~Pl~~~lla~l~l~e~~~~~~~~~~~~~igi~l~~~Gv~li~ 163 (376)
..+++...+++.++..++++.|.+.+..+ ..+.|+++++++++++||++++ .+++|+.+.+.|++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~------~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL------PAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHHh
Confidence 45666667899999999999999999988 7999999999999999999999 59999999999999986
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.23 E-value=5.5e-07 Score=73.91 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHhcccCCccceeec-ccchhHHHHHHHHHHhhccccccccCccceeehHhHHHHhHhhhhh
Q 017167 90 LLALVGITANQGFYLLGLENTSPTFASAI-QNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITL 164 (376)
Q Consensus 90 ~~g~~~~~~~~~~~~~al~~~~~~~a~ii-~~~~Pl~~~lla~l~l~e~~~~~~~~~~~~~igi~l~~~Gv~li~~ 164 (376)
+.+++...+++.++..++++.|++.+..+ ..+.|++++++++++++|++++ .+++|+.+.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~------~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL------PAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHHhc
Confidence 56666678899999999999999999998 8999999999999999999999 599999999999999974
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=10.54 E-value=9.9e+02 Score=22.38 Aligned_cols=52 Identities=8% Similarity=-0.027 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccceeecccchhHHHHHHHHHHhh
Q 017167 84 FALQFILLALVGITANQGFYLLGLENTSPTFASAIQNSVPAITFLMAAIFRI 135 (376)
Q Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~ii~~~~Pl~~~lla~l~l~ 135 (376)
+-..+..+|.+-.-+++..|+-++...+...-+.++......+..+++++..
T Consensus 175 hn~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~ 226 (407)
T 3b9w_A 175 TSDRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLS 226 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 3345556665555678888888843222222223344444444555555443
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.96 E-value=3.8e+02 Score=15.55 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhccccc
Q 017167 124 AITFLMAAIFRIEKVRL 140 (376)
Q Consensus 124 l~~~lla~l~l~e~~~~ 140 (376)
+..+++..++.+||+..
T Consensus 14 iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 14 IYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 44567777888888765
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=4.69 E-value=1.9e+02 Score=18.04 Aligned_cols=14 Identities=14% Similarity=-0.083 Sum_probs=6.5
Q ss_pred hhhhhhhhcccccc
Q 017167 332 SPARSILLPNRWMS 345 (376)
Q Consensus 332 lI~~gi~l~~~~~~ 345 (376)
++.+++++..||++
T Consensus 25 ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhh
Confidence 44444445544443
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=4.39 E-value=2.1e+02 Score=17.86 Aligned_cols=10 Identities=30% Similarity=-0.090 Sum_probs=4.0
Q ss_pred hhhhhccccc
Q 017167 335 RSILLPNRWM 344 (376)
Q Consensus 335 ~gi~l~~~~~ 344 (376)
+++++..||+
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3334444443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=3.94 E-value=1.9e+03 Score=19.24 Aligned_cols=37 Identities=14% Similarity=-0.101 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHH
Q 017167 26 MVALQFGYAGFHVVSRAALN-MGISKLVFPVYRNIIAFL 63 (376)
Q Consensus 26 ~lla~~~~g~~~~~~k~~~~-~~~~~~~~~~~r~~~a~l 63 (376)
++.+.++++...+..-.... . -+...+...|.+.+..
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 95 LPAGLILAAAVMLFMGFVPWAT-SSIAVMFVLLFLCGWF 132 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHH-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcc-ccHHHHHHHHHHHHHH
Confidence 44555555555555433100 1 2345666777776653
No 10
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=3.27 E-value=2.1e+03 Score=18.76 Aligned_cols=141 Identities=9% Similarity=-0.051 Sum_probs=0.0
Q ss_pred hhccc--cccccCccceeehHhHHHHhHhhhhhccCCcccCCCCCCCCCCCCCcchhhhccccCCCCCchhhHHHHHHHH
Q 017167 134 RIEKV--RLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQIQPDSLTSTIFLSLGDAKGKNWTLGCVYLIGH 211 (376)
Q Consensus 134 l~e~~--~~~~~~~~~~~igi~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a 211 (376)
+.+|+ ++ .+-++.++..|+....-..+.. .+.....|..+..++
T Consensus 3 ~~~~~~~p~-------~~F~~~MGtg~la~~~~~~~~~---------------------------~~~~~~i~~~l~~l~ 48 (314)
T 3m73_A 3 ITKPFPLPT-------GYFGIPLGLAALSLAWFHLENL---------------------------FPAARMVSDVLGIVA 48 (314)
T ss_dssp SCCCCSSCG-------GGGHHHHHHHHHHHHHHTTTTT---------------------------CTTHHHHHHHHHHHH
T ss_pred CCCCcCCCH-------HHHHHHHHHHHHHHHHHHHHHh---------------------------CCchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH--------HHhhhhCCCcchhHHHHHHHHHHHHHHHHHHhhcCcccccccCCchhHHHHHHHHHHHHHH
Q 017167 212 CLSWSGWLVMQ--------APVLKKYPARLSVTAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGIA 283 (376)
Q Consensus 212 ~~~~a~~~v~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 283 (376)
.+.+..-.... +...++..||....++-...-+...+.... .++...-....+++-...-+.....
T Consensus 49 ~~l~~~l~~~~~~r~~~~p~~~~~~l~hPv~~~f~~t~~ma~~~l~~~~------~~~~~~~a~~lW~~~~~l~l~~~~~ 122 (314)
T 3m73_A 49 SAVWILFILMYAYKLRYYFEEVRAEYHSPVRFSFIALIPITTMLVGDIL------YRWNPLIAEVLIWIGTIGQLLFSTL 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTGGGGGGHHHHHHHHHHHHH------TTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCcchhhHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhcCCceeeeecchhHHHHHHHHH
Q 017167 284 FAVQIWCIDRGGPVFVAVYQPVQTLVVAIMA 314 (376)
Q Consensus 284 ~~l~~~al~~~~a~~~s~~~~l~pv~a~l~~ 314 (376)
+.....--++.+...++..-.+-+|-+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~psW~lp~V~~~~V~ 153 (314)
T 3m73_A 123 RVSELWQGGVFEQKSTHPSFYLPAVAANFTS 153 (314)
T ss_dssp HTGGGGGCSSSCGGGCCGGGHHHHTHHHHHH
T ss_pred HHHHHHhcccCcccccCchhHhhccHHHHHH
Done!