BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017168
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 153/344 (44%), Gaps = 29/344 (8%)
Query: 23 CLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEIL 82
LA +L+ E+ SFW PYI+ L + ++PL + E E+ YL + ++
Sbjct: 155 ALAFHLLCERA-SPNSFWQPYIQTLPSE-------YDTPLYFEEDEVRYLQSTQAIHDVF 206
Query: 83 ERAEGIKREYNELDTVWFMAGSLFQQYPY--DIP-TEAFTFEIFKQAFVAVQSCVVHLQK 139
+ + R+Y +F + Q +P+ +P ++FT+E ++ A +V + +
Sbjct: 207 SQYKNTARQY-----AYFY--KVIQTHPHANKLPLKDSFTYEDYRWAVSSVXTRQNQIPT 259
Query: 140 VSLAR-RFALVPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVWCGPQPNSK 198
+R AL+PL + + ++AGE I ++ G + N++
Sbjct: 260 EDGSRVTLALIPLWDXCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAE 319
Query: 199 LLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAIS 258
+I+ GF ++N +DR+ ++ ++ D Y K V R G + VF +H E +
Sbjct: 320 FVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAXKAEVLARAGIPTSSVFALHF-TEPPISA 378
Query: 259 DMLPYLRL---------GYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLA 309
+L +LR+ ++ S + + + PVS E + L D L
Sbjct: 379 QLLAFLRVFCXTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLK 438
Query: 310 GYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTA 353
Y T+ ED+++L +++L + + A +L EK++L ++ A
Sbjct: 439 TYKTTIEEDKSVLKNHDLSVRAKXAIKLRLGEKEILEKAVKSAA 482
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 130/325 (40%), Gaps = 24/325 (7%)
Query: 40 WLPYIRELDRQRGR---------GQL--AVESPLLWSETELAYLTGSPTKAEILERAEGI 88
WL I L R+R R G L +S + WSE EL L GS + E +
Sbjct: 81 WLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYV 140
Query: 89 KREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFK-QAFVAVQS-CVVHLQKVSLARRF 146
K E +L+ + P + + F I + +AF +++ +V + L
Sbjct: 141 KNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHS 200
Query: 147 ALVPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVV-WCGPQPNSKLLINYGF 205
A V AY K KAGE + + + + N++L ++YGF
Sbjct: 201 AGVTTEDH--AYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGF 258
Query: 206 VDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLR 265
++ + + ++ DP + DK VA+ NG F + R +LPYLR
Sbjct: 259 IEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPP--GLLPYLR 316
Query: 266 LGYVSDTSE--MQSVISS--LGPI-CPVSPCMERAVLDQLADYFKARLAGYPATLSEDEA 320
L + T ++S+ G + VS E + + + K+ LAGY T+ +D
Sbjct: 317 LVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRE 376
Query: 321 MLTDYNLHPKKRVATQLVRMEKKML 345
L + NL + +A + EK +L
Sbjct: 377 -LKEGNLDSRLAIAVGIREGEKMVL 400
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 130/325 (40%), Gaps = 24/325 (7%)
Query: 40 WLPYIRELDRQRGR---------GQL--AVESPLLWSETELAYLTGSPTKAEILERAEGI 88
WL I L R+R R G L +S + WSE EL L GS + E +
Sbjct: 77 WLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYV 136
Query: 89 KREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFK-QAFVAVQS-CVVHLQKVSLARRF 146
K E +L+ + P + + F I + +AF +++ +V + L
Sbjct: 137 KNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHS 196
Query: 147 ALVPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVV-WCGPQPNSKLLINYGF 205
A V AY K KAGE + + + + N++L ++YGF
Sbjct: 197 AGVTTEDH--AYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGF 254
Query: 206 VDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLR 265
++ + + ++ DP + DK VA+ NG F + R +LPYLR
Sbjct: 255 IEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNR--TLPPGLLPYLR 312
Query: 266 LGYVSDTSE--MQSVISS--LGPI-CPVSPCMERAVLDQLADYFKARLAGYPATLSEDEA 320
L + T ++S+ G + VS E + + + K+ LAGY T+ +D
Sbjct: 313 LVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRE 372
Query: 321 MLTDYNLHPKKRVATQLVRMEKKML 345
L + NL + +A + EK +L
Sbjct: 373 -LKEGNLDSRLAIAVGIREGEKMVL 396
>pdb|1MZH|A Chain A, Qr15, An Aldolase
pdb|1MZH|B Chain B, Qr15, An Aldolase
Length = 225
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 75 SPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCV 134
+ T ++ E E ++ ELD VW + S F+ YD E EIF++ AV +
Sbjct: 67 NKTSVKVKEAVEAVRDGAQELDIVWNL--SAFKSEKYDFVVEELK-EIFRETPSAVHKVI 123
Query: 135 V 135
V
Sbjct: 124 V 124
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 243 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 287
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 132 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 170
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 243 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 287
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 133 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 171
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 243 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 287
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 132 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 170
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 243 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 287
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 133 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 171
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 243 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 287
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 133 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 171
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 243 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 287
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 133 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,158,205
Number of Sequences: 62578
Number of extensions: 384379
Number of successful extensions: 917
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 12
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)